Query 011002
Match_columns 496
No_of_seqs 489 out of 2695
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 4.1E-87 8.9E-92 681.1 26.9 374 3-384 67-442 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 5.5E-67 1.2E-71 542.4 35.5 302 70-383 50-354 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 6.4E-65 1.4E-69 541.6 31.8 300 72-385 2-309 (470)
4 PRK14903 16S rRNA methyltransf 100.0 4.1E-60 9E-65 502.8 35.9 302 66-384 126-431 (431)
5 PRK14901 16S rRNA methyltransf 100.0 6.8E-60 1.5E-64 502.1 32.6 291 66-384 141-434 (434)
6 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1E-61 2.2E-66 489.0 17.6 281 94-381 1-283 (283)
7 TIGR00563 rsmB ribosomal RNA s 100.0 1.4E-57 3.1E-62 483.2 36.3 297 65-383 128-426 (426)
8 PRK14902 16S rRNA methyltransf 100.0 4.6E-56 1E-60 474.0 36.1 304 65-384 140-444 (444)
9 PRK10901 16S rRNA methyltransf 100.0 6.7E-56 1.5E-60 470.6 36.6 293 65-383 134-427 (427)
10 PRK14904 16S rRNA methyltransf 100.0 1.5E-54 3.3E-59 462.5 35.7 301 65-384 142-444 (445)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 2.3E-54 4.9E-59 431.7 27.8 263 106-382 1-264 (264)
12 KOG2198 tRNA cytosine-5-methyl 100.0 8.9E-40 1.9E-44 331.5 17.3 254 82-339 32-325 (375)
13 KOG2360 Proliferation-associat 100.0 1.9E-34 4E-39 292.6 18.0 284 87-382 115-412 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 5.5E-17 1.2E-21 171.0 16.0 164 152-337 197-368 (396)
15 COG1092 Predicted SAM-dependen 99.6 6.5E-16 1.4E-20 161.7 10.8 157 152-330 194-356 (393)
16 COG2242 CobL Precorrin-6B meth 99.6 3.4E-14 7.3E-19 133.9 15.6 138 167-340 23-161 (187)
17 COG4123 Predicted O-methyltran 99.6 2.5E-14 5.4E-19 141.0 13.2 153 167-333 33-187 (248)
18 PRK11783 rlmL 23S rRNA m(2)G24 99.6 3.5E-14 7.5E-19 160.0 15.9 162 152-338 515-678 (702)
19 PF13659 Methyltransf_26: Meth 99.6 8.1E-15 1.7E-19 127.3 8.1 116 179-314 1-117 (117)
20 TIGR03704 PrmC_rel_meth putati 99.5 1.1E-13 2.4E-18 137.7 16.1 142 178-332 86-232 (251)
21 TIGR00537 hemK_rel_arch HemK-r 99.5 1.9E-13 4.2E-18 128.5 15.8 155 166-337 7-162 (179)
22 PRK09328 N5-glutamine S-adenos 99.5 3.7E-13 7.9E-18 134.4 18.3 234 76-334 9-256 (275)
23 TIGR03533 L3_gln_methyl protei 99.5 4E-13 8.7E-18 136.0 18.4 141 176-331 119-265 (284)
24 PF05175 MTS: Methyltransferas 99.5 5.5E-14 1.2E-18 131.6 10.5 125 164-313 17-141 (170)
25 PRK14967 putative methyltransf 99.5 3.8E-13 8.3E-18 131.1 16.7 159 158-334 14-178 (223)
26 TIGR01177 conserved hypothetic 99.5 2.4E-13 5.1E-18 140.3 15.3 121 173-315 177-297 (329)
27 PRK00377 cbiT cobalt-precorrin 99.5 1.1E-12 2.3E-17 125.7 17.8 139 167-338 29-170 (198)
28 PF12847 Methyltransf_18: Meth 99.5 2.3E-13 5E-18 117.1 11.4 110 178-313 1-112 (112)
29 TIGR00080 pimt protein-L-isoas 99.5 3.8E-13 8.3E-18 130.4 13.9 89 169-259 68-156 (215)
30 PRK03522 rumB 23S rRNA methylu 99.5 4.3E-13 9.4E-18 137.6 14.9 87 173-263 168-254 (315)
31 PF10672 Methyltrans_SAM: S-ad 99.5 2.8E-14 6.2E-19 144.0 5.6 144 152-320 100-246 (286)
32 COG2226 UbiE Methylase involve 99.5 3.6E-13 7.9E-18 132.5 12.3 117 169-314 42-158 (238)
33 PRK13168 rumA 23S rRNA m(5)U19 99.5 1.4E-12 3E-17 139.9 16.6 88 172-262 291-380 (443)
34 PRK04266 fibrillarin; Provisio 99.5 3.7E-12 8E-17 125.0 18.2 106 174-311 68-175 (226)
35 PTZ00146 fibrillarin; Provisio 99.4 3.7E-12 8E-17 128.6 18.3 141 166-337 114-268 (293)
36 PF01209 Ubie_methyltran: ubiE 99.4 1.9E-13 4.1E-18 134.7 8.1 138 169-337 38-175 (233)
37 TIGR03534 RF_mod_PrmC protein- 99.4 1.7E-12 3.8E-17 127.4 14.8 144 178-337 87-238 (251)
38 TIGR00479 rumA 23S rRNA (uraci 99.4 1.8E-12 3.8E-17 138.4 14.5 88 172-262 286-375 (431)
39 PRK08287 cobalt-precorrin-6Y C 99.4 4.7E-12 1E-16 119.9 13.9 135 164-335 17-151 (187)
40 PRK11805 N5-glutamine S-adenos 99.4 4.7E-12 1E-16 129.7 14.8 121 179-311 134-262 (307)
41 TIGR00536 hemK_fam HemK family 99.4 1.2E-11 2.6E-16 125.2 17.2 128 179-314 115-246 (284)
42 PRK13942 protein-L-isoaspartat 99.4 4.3E-12 9.4E-17 123.1 13.4 98 158-257 56-153 (212)
43 PRK14968 putative methyltransf 99.4 1.2E-11 2.5E-16 116.0 15.8 157 167-337 12-170 (188)
44 TIGR02469 CbiT precorrin-6Y C5 99.4 1.2E-11 2.6E-16 107.6 14.8 111 171-312 12-122 (124)
45 PF13847 Methyltransf_31: Meth 99.4 4.7E-12 1E-16 115.8 12.2 111 177-314 2-112 (152)
46 PF05958 tRNA_U5-meth_tr: tRNA 99.4 4.2E-12 9.2E-17 132.3 12.9 90 170-263 189-292 (352)
47 PRK07402 precorrin-6B methylas 99.4 4.4E-12 9.6E-17 121.1 11.7 147 158-339 20-169 (196)
48 PRK13944 protein-L-isoaspartat 99.4 9.2E-12 2E-16 120.1 13.8 87 170-258 64-151 (205)
49 PRK14966 unknown domain/N5-glu 99.4 1.2E-11 2.6E-16 130.4 15.6 146 176-336 249-401 (423)
50 PRK00121 trmB tRNA (guanine-N( 99.3 5.5E-12 1.2E-16 121.4 11.4 127 178-329 40-167 (202)
51 TIGR00138 gidB 16S rRNA methyl 99.3 2.2E-11 4.8E-16 115.5 14.9 123 178-338 42-167 (181)
52 COG2263 Predicted RNA methylas 99.3 3.6E-11 7.7E-16 113.4 15.6 123 174-335 41-163 (198)
53 TIGR02752 MenG_heptapren 2-hep 99.3 2.7E-11 5.8E-16 118.0 14.6 116 170-313 37-152 (231)
54 PF01135 PCMT: Protein-L-isoas 99.3 6.6E-12 1.4E-16 121.8 10.2 89 169-259 63-151 (209)
55 COG2890 HemK Methylase of poly 99.3 3.6E-11 7.8E-16 121.6 15.8 158 158-332 88-254 (280)
56 COG2265 TrmA SAM-dependent met 99.3 1E-11 2.2E-16 132.3 12.2 113 170-315 285-398 (432)
57 KOG1540 Ubiquinone biosynthesi 99.3 1.5E-11 3.3E-16 120.3 11.8 139 169-338 91-237 (296)
58 PLN02233 ubiquinone biosynthes 99.3 2E-11 4.3E-16 122.2 12.5 118 170-315 65-185 (261)
59 PRK00107 gidB 16S rRNA methylt 99.3 2.5E-11 5.4E-16 115.8 12.6 120 178-335 45-164 (187)
60 COG2519 GCD14 tRNA(1-methylade 99.3 5.8E-11 1.2E-15 116.7 15.0 126 155-314 71-198 (256)
61 COG2813 RsmC 16S RNA G1207 met 99.3 1.8E-10 3.8E-15 116.2 18.8 128 164-317 144-271 (300)
62 COG2518 Pcm Protein-L-isoaspar 99.3 3.6E-11 7.8E-16 115.7 13.2 97 157-258 51-147 (209)
63 PRK00312 pcm protein-L-isoaspa 99.3 4.9E-11 1.1E-15 115.2 13.8 97 158-259 58-154 (212)
64 PRK09489 rsmC 16S ribosomal RN 99.3 3.4E-11 7.4E-16 125.0 13.5 129 164-319 182-310 (342)
65 PRK15001 SAM-dependent 23S rib 99.3 4.6E-11 1E-15 125.3 14.5 124 164-312 214-340 (378)
66 PRK11873 arsM arsenite S-adeno 99.3 5.7E-11 1.2E-15 119.0 13.7 115 173-315 72-186 (272)
67 TIGR00438 rrmJ cell division p 99.3 6.9E-11 1.5E-15 112.1 13.4 112 175-312 29-146 (188)
68 TIGR02085 meth_trns_rumB 23S r 99.2 4E-11 8.8E-16 125.9 12.3 84 175-262 230-313 (374)
69 PRK01544 bifunctional N5-gluta 99.2 1.1E-10 2.4E-15 127.1 16.1 141 178-334 138-287 (506)
70 PF08704 GCD14: tRNA methyltra 99.2 8.7E-11 1.9E-15 116.5 12.7 92 166-258 28-122 (247)
71 PLN02781 Probable caffeoyl-CoA 99.2 7.4E-11 1.6E-15 116.3 12.1 118 169-315 59-181 (234)
72 COG1041 Predicted DNA modifica 99.2 9.7E-11 2.1E-15 120.1 12.7 122 170-313 189-311 (347)
73 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.1E-10 2.3E-15 122.5 13.0 122 173-315 117-238 (390)
74 COG2264 PrmA Ribosomal protein 99.2 1.7E-10 3.6E-15 116.8 13.9 137 165-338 147-286 (300)
75 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.1E-10 2.5E-15 112.4 12.1 80 177-259 52-131 (199)
76 PRK13943 protein-L-isoaspartat 99.2 1.5E-10 3.2E-15 119.3 13.2 85 171-257 73-157 (322)
77 PLN02244 tocopherol O-methyltr 99.2 1.4E-10 3.1E-15 120.3 13.1 108 177-314 117-225 (340)
78 PRK11188 rrmJ 23S rRNA methylt 99.2 1.7E-10 3.7E-15 111.8 12.8 110 176-312 49-165 (209)
79 TIGR00091 tRNA (guanine-N(7)-) 99.2 6.7E-11 1.5E-15 113.1 9.4 116 178-312 16-132 (194)
80 PF02475 Met_10: Met-10+ like- 99.2 6.6E-11 1.4E-15 114.0 8.8 101 176-310 99-200 (200)
81 PLN02476 O-methyltransferase 99.2 1.3E-10 2.8E-15 117.1 11.0 123 166-317 106-233 (278)
82 PF01170 UPF0020: Putative RNA 99.2 4.2E-10 9E-15 106.6 13.7 124 169-314 19-151 (179)
83 PRK05031 tRNA (uracil-5-)-meth 99.2 1E-10 2.3E-15 122.3 10.5 81 179-262 207-301 (362)
84 PRK04338 N(2),N(2)-dimethylgua 99.2 1.8E-10 3.8E-15 121.3 12.2 112 169-314 47-159 (382)
85 TIGR00406 prmA ribosomal prote 99.2 5E-10 1.1E-14 113.6 14.6 133 166-337 145-280 (288)
86 PRK11036 putative S-adenosyl-L 99.1 5.3E-10 1.2E-14 111.1 14.0 108 177-314 43-151 (255)
87 PRK00517 prmA ribosomal protei 99.1 8E-10 1.7E-14 109.8 15.2 119 176-338 117-236 (250)
88 TIGR02143 trmA_only tRNA (urac 99.1 2.6E-10 5.6E-15 119.0 11.5 82 179-263 198-293 (353)
89 PRK11207 tellurite resistance 99.1 9.4E-10 2E-14 105.5 13.8 114 169-312 21-134 (197)
90 PRK08317 hypothetical protein; 99.1 1.3E-09 2.8E-14 105.2 14.9 115 171-314 12-126 (241)
91 PRK15451 tRNA cmo(5)U34 methyl 99.1 1.1E-09 2.3E-14 108.7 14.1 110 176-314 54-166 (247)
92 TIGR00477 tehB tellurite resis 99.1 1.1E-09 2.3E-14 104.9 13.0 126 155-312 8-133 (195)
93 PLN02396 hexaprenyldihydroxybe 99.1 1.7E-09 3.6E-14 111.5 15.0 108 175-313 128-236 (322)
94 COG2520 Predicted methyltransf 99.1 6.5E-10 1.4E-14 114.6 11.7 122 176-331 186-311 (341)
95 COG4122 Predicted O-methyltran 99.1 8.7E-10 1.9E-14 107.3 11.3 122 166-316 47-170 (219)
96 PF06325 PrmA: Ribosomal prote 99.1 4.5E-10 9.7E-15 114.2 9.7 131 167-338 148-281 (295)
97 KOG2904 Predicted methyltransf 99.1 2.9E-09 6.3E-14 105.4 14.8 146 178-330 148-301 (328)
98 PHA03412 putative methyltransf 99.1 7.2E-10 1.6E-14 108.9 10.6 137 178-336 49-198 (241)
99 COG2230 Cfa Cyclopropane fatty 99.1 2.6E-09 5.7E-14 107.4 14.6 117 169-317 63-181 (283)
100 PF03602 Cons_hypoth95: Conser 99.1 3.9E-10 8.4E-15 107.3 8.0 82 177-260 41-125 (183)
101 PF08241 Methyltransf_11: Meth 99.1 3.2E-10 6.9E-15 93.5 6.4 95 183-310 1-95 (95)
102 PLN02672 methionine S-methyltr 99.0 1.2E-09 2.6E-14 126.7 13.0 149 179-336 119-299 (1082)
103 PRK14103 trans-aconitate 2-met 99.0 1E-09 2.2E-14 109.0 10.8 104 171-311 22-125 (255)
104 PTZ00098 phosphoethanolamine N 99.0 2.1E-09 4.6E-14 107.7 13.2 115 169-314 43-158 (263)
105 PRK01683 trans-aconitate 2-met 99.0 2.7E-09 5.8E-14 105.9 13.5 109 169-312 22-130 (258)
106 PHA03411 putative methyltransf 99.0 3.3E-09 7.1E-14 106.4 14.1 148 175-337 61-211 (279)
107 PF02353 CMAS: Mycolic acid cy 99.0 1.3E-09 2.9E-14 109.8 11.0 117 169-316 53-170 (273)
108 PRK00216 ubiE ubiquinone/menaq 99.0 5E-09 1.1E-13 101.6 14.7 118 170-315 43-161 (239)
109 TIGR00308 TRM1 tRNA(guanine-26 99.0 8.7E-10 1.9E-14 115.7 9.6 103 180-314 46-148 (374)
110 cd02440 AdoMet_MTases S-adenos 99.0 3.8E-09 8.2E-14 86.4 11.2 103 181-311 1-103 (107)
111 PRK10258 biotin biosynthesis p 99.0 1.3E-09 2.7E-14 107.9 9.9 117 162-314 26-142 (251)
112 TIGR00095 RNA methyltransferas 99.0 1.7E-09 3.6E-14 103.4 10.1 81 178-260 49-132 (189)
113 PLN02336 phosphoethanolamine N 99.0 3.4E-09 7.3E-14 114.5 13.5 116 170-316 258-373 (475)
114 PLN03075 nicotianamine synthas 99.0 4.1E-09 8.9E-14 107.0 13.1 109 178-313 123-234 (296)
115 COG0742 N6-adenine-specific me 99.0 2.9E-09 6.4E-14 101.0 11.2 82 177-260 42-125 (187)
116 COG2227 UbiG 2-polyprenyl-3-me 99.0 8E-10 1.7E-14 108.0 7.5 106 177-314 58-163 (243)
117 smart00828 PKS_MT Methyltransf 99.0 1.4E-08 2.9E-13 98.5 15.8 129 180-338 1-142 (224)
118 COG0293 FtsJ 23S rRNA methylas 99.0 3.2E-09 7E-14 102.0 10.6 126 176-330 43-174 (205)
119 PRK06922 hypothetical protein; 99.0 6.3E-09 1.4E-13 114.8 14.2 127 173-315 413-540 (677)
120 PF01596 Methyltransf_3: O-met 99.0 4.6E-10 9.9E-15 108.6 4.8 109 178-315 45-158 (205)
121 smart00650 rADc Ribosomal RNA 99.0 6.5E-09 1.4E-13 97.0 12.2 83 171-260 6-88 (169)
122 PRK15068 tRNA mo(5)U34 methylt 98.9 1.4E-08 3E-13 104.8 14.6 114 171-315 115-229 (322)
123 PF13649 Methyltransf_25: Meth 98.9 3.4E-09 7.4E-14 90.2 8.2 99 182-306 1-101 (101)
124 TIGR00740 methyltransferase, p 98.9 1.5E-08 3.3E-13 99.6 14.0 109 177-313 52-162 (239)
125 TIGR00452 methyltransferase, p 98.9 2.1E-08 4.5E-13 103.1 14.9 117 173-320 116-233 (314)
126 PF09445 Methyltransf_15: RNA 98.9 4.6E-09 1E-13 97.9 9.0 84 180-266 1-86 (163)
127 PF02384 N6_Mtase: N-6 DNA Met 98.9 2.3E-09 5.1E-14 109.4 7.3 170 158-334 26-208 (311)
128 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.9E-08 4.2E-13 96.4 13.3 114 172-315 33-146 (223)
129 TIGR02716 C20_methyl_CrtF C-20 98.9 5.6E-08 1.2E-12 99.2 17.4 123 169-321 140-263 (306)
130 PRK12335 tellurite resistance 98.9 1.9E-08 4.2E-13 101.9 13.8 104 177-311 119-222 (287)
131 PF03848 TehB: Tellurite resis 98.9 7.3E-09 1.6E-13 99.1 9.7 88 160-255 13-100 (192)
132 KOG2915 tRNA(1-methyladenosine 98.9 2.7E-08 5.8E-13 98.5 13.2 94 165-258 92-186 (314)
133 PRK11705 cyclopropane fatty ac 98.9 1.7E-08 3.8E-13 106.5 12.6 112 170-315 159-270 (383)
134 PRK04457 spermidine synthase; 98.9 1.3E-08 2.8E-13 102.0 10.9 114 177-314 65-179 (262)
135 PF01269 Fibrillarin: Fibrilla 98.9 4.3E-08 9.4E-13 95.1 14.0 141 166-337 55-209 (229)
136 PRK05134 bifunctional 3-demeth 98.8 6.2E-08 1.3E-12 94.6 14.8 114 170-314 40-153 (233)
137 PLN02589 caffeoyl-CoA O-methyl 98.8 1.5E-08 3.3E-13 100.7 10.4 120 168-316 69-194 (247)
138 PLN02490 MPBQ/MSBQ methyltrans 98.8 4.5E-08 9.7E-13 101.6 13.5 104 177-312 112-215 (340)
139 TIGR01983 UbiG ubiquinone bios 98.8 7.7E-08 1.7E-12 93.1 14.4 108 177-314 44-151 (224)
140 PRK11727 23S rRNA mA1618 methy 98.8 6E-08 1.3E-12 99.8 13.7 85 178-263 114-203 (321)
141 TIGR02072 BioC biotin biosynth 98.8 2E-08 4.2E-13 97.2 9.4 104 177-313 33-136 (240)
142 PRK00050 16S rRNA m(4)C1402 me 98.8 1.6E-08 3.5E-13 102.9 8.2 90 171-262 12-103 (296)
143 KOG2187 tRNA uracil-5-methyltr 98.8 1.9E-08 4.2E-13 107.1 9.0 114 172-317 377-494 (534)
144 PLN02336 phosphoethanolamine N 98.8 6.5E-08 1.4E-12 104.6 13.3 120 168-316 27-146 (475)
145 TIGR02021 BchM-ChlM magnesium 98.8 9.8E-08 2.1E-12 92.5 12.8 72 176-255 53-125 (219)
146 KOG1270 Methyltransferases [Co 98.7 4.1E-08 8.9E-13 97.0 9.8 104 176-313 87-196 (282)
147 PF02390 Methyltransf_4: Putat 98.7 3.3E-08 7.1E-13 95.0 8.8 133 179-336 18-156 (195)
148 PTZ00338 dimethyladenosine tra 98.7 3E-08 6.5E-13 101.1 9.0 97 160-263 18-115 (294)
149 PF08242 Methyltransf_12: Meth 98.7 1.7E-09 3.7E-14 91.4 -0.4 99 183-308 1-99 (99)
150 smart00138 MeTrc Methyltransfe 98.7 9.9E-08 2.2E-12 95.8 12.2 111 177-314 98-244 (264)
151 PF05401 NodS: Nodulation prot 98.7 6.4E-08 1.4E-12 92.4 10.1 113 169-313 34-147 (201)
152 PRK14896 ksgA 16S ribosomal RN 98.7 4.5E-08 9.8E-13 97.8 9.0 94 159-261 10-103 (258)
153 PF01728 FtsJ: FtsJ-like methy 98.7 3.3E-08 7.2E-13 93.1 7.2 123 176-328 21-153 (181)
154 PRK00811 spermidine synthase; 98.7 1.8E-07 3.9E-12 94.8 12.9 126 178-329 76-206 (283)
155 PRK01581 speE spermidine synth 98.7 2.1E-07 4.6E-12 96.9 13.3 127 173-325 146-279 (374)
156 PRK11088 rrmA 23S rRNA methylt 98.7 7.3E-08 1.6E-12 96.9 9.5 72 177-255 84-157 (272)
157 COG2521 Predicted archaeal met 98.6 2.8E-08 6E-13 96.5 4.8 142 171-337 127-274 (287)
158 TIGR00417 speE spermidine synt 98.6 4.8E-07 1E-11 91.0 13.9 125 178-328 72-200 (270)
159 COG0220 Predicted S-adenosylme 98.6 1.1E-07 2.5E-12 93.3 9.0 122 180-326 50-172 (227)
160 COG4106 Tam Trans-aconitate me 98.6 1E-07 2.2E-12 91.7 8.3 102 175-311 27-128 (257)
161 TIGR03438 probable methyltrans 98.6 4.6E-07 9.9E-12 92.6 13.5 122 177-327 62-189 (301)
162 COG0116 Predicted N6-adenine-s 98.6 5.6E-07 1.2E-11 93.9 14.1 144 150-313 157-345 (381)
163 PRK10742 putative methyltransf 98.6 3.8E-07 8.3E-12 90.3 12.1 91 167-261 75-176 (250)
164 PRK00274 ksgA 16S ribosomal RN 98.6 8.5E-08 1.8E-12 96.6 7.7 86 169-262 33-118 (272)
165 KOG1663 O-methyltransferase [S 98.6 4.5E-07 9.7E-12 88.2 11.4 121 166-315 61-186 (237)
166 TIGR03840 TMPT_Se_Te thiopurin 98.6 7.2E-07 1.6E-11 86.9 12.4 108 177-315 33-155 (213)
167 KOG1271 Methyltransferases [Ge 98.5 3.7E-07 8.1E-12 85.8 9.4 119 180-319 69-188 (227)
168 TIGR03587 Pse_Me-ase pseudamin 98.5 7.8E-07 1.7E-11 86.0 11.9 71 176-255 41-111 (204)
169 PRK03612 spermidine synthase; 98.5 5.7E-07 1.2E-11 98.6 11.9 117 177-316 296-419 (521)
170 PLN02366 spermidine synthase 98.5 1.2E-06 2.6E-11 89.9 13.3 111 178-311 91-205 (308)
171 PLN02585 magnesium protoporphy 98.5 9.6E-07 2.1E-11 90.9 12.5 70 178-255 144-218 (315)
172 PRK06202 hypothetical protein; 98.5 5E-07 1.1E-11 88.5 9.6 79 173-256 55-136 (232)
173 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.7E-06 3.8E-11 98.0 14.9 112 149-260 154-314 (702)
174 PRK13255 thiopurine S-methyltr 98.5 1.9E-06 4E-11 84.3 12.8 109 175-315 34-158 (218)
175 KOG1099 SAM-dependent methyltr 98.5 3.9E-07 8.6E-12 88.3 7.7 117 180-325 43-173 (294)
176 PF13489 Methyltransf_23: Meth 98.5 1.7E-07 3.6E-12 85.0 5.0 105 170-315 13-118 (161)
177 PRK05785 hypothetical protein; 98.5 6.3E-07 1.4E-11 87.9 9.3 66 178-255 51-116 (226)
178 PRK07580 Mg-protoporphyrin IX 98.5 2.2E-06 4.7E-11 83.2 12.8 71 177-255 62-133 (230)
179 PRK01544 bifunctional N5-gluta 98.5 1.7E-06 3.8E-11 94.5 13.4 117 177-312 346-462 (506)
180 COG1889 NOP1 Fibrillarin-like 98.4 4E-06 8.8E-11 80.1 13.6 141 166-338 58-212 (231)
181 KOG4589 Cell division protein 98.4 3.5E-06 7.6E-11 79.6 12.7 133 177-337 68-208 (232)
182 TIGR00755 ksgA dimethyladenosi 98.4 5.8E-07 1.3E-11 89.5 8.0 84 168-260 19-105 (253)
183 KOG3420 Predicted RNA methylas 98.4 3.8E-07 8.2E-12 82.8 5.7 77 177-258 47-123 (185)
184 KOG3191 Predicted N6-DNA-methy 98.4 5.4E-06 1.2E-10 78.1 12.8 140 179-333 44-186 (209)
185 KOG1596 Fibrillarin and relate 98.4 1.4E-06 3E-11 85.1 9.1 132 167-329 139-281 (317)
186 TIGR02987 met_A_Alw26 type II 98.4 2.9E-06 6.4E-11 93.1 12.6 87 178-264 31-127 (524)
187 KOG2899 Predicted methyltransf 98.3 2.5E-06 5.3E-11 83.6 9.8 113 178-315 58-212 (288)
188 PF07021 MetW: Methionine bios 98.3 3.9E-06 8.6E-11 80.0 10.8 71 176-255 11-81 (193)
189 KOG1661 Protein-L-isoaspartate 98.3 3.2E-06 6.9E-11 81.2 10.1 86 171-258 73-171 (237)
190 PF08003 Methyltransf_9: Prote 98.3 8E-06 1.7E-10 82.9 13.2 117 173-320 110-227 (315)
191 COG4076 Predicted RNA methylas 98.2 2.1E-06 4.5E-11 81.1 6.3 100 179-309 33-132 (252)
192 COG0286 HsdM Type I restrictio 98.2 6.5E-06 1.4E-10 89.7 10.6 169 158-330 166-346 (489)
193 COG0030 KsgA Dimethyladenosine 98.1 9.7E-06 2.1E-10 81.0 9.6 90 168-263 20-109 (259)
194 PF02527 GidB: rRNA small subu 98.1 6E-06 1.3E-10 78.7 7.2 84 167-255 38-121 (184)
195 TIGR00006 S-adenosyl-methyltra 98.1 1E-05 2.2E-10 82.8 8.6 90 171-262 13-105 (305)
196 PF01861 DUF43: Protein of unk 98.1 2E-05 4.4E-10 77.6 10.2 131 177-338 43-176 (243)
197 PF02005 TRM: N2,N2-dimethylgu 98.1 7.9E-06 1.7E-10 86.1 7.6 105 178-314 49-155 (377)
198 PLN02823 spermine synthase 98.1 4E-05 8.7E-10 79.7 12.7 78 179-258 104-185 (336)
199 KOG1499 Protein arginine N-met 98.0 2.2E-05 4.8E-10 80.8 10.1 112 178-317 60-172 (346)
200 TIGR02081 metW methionine bios 98.0 3E-05 6.5E-10 73.9 10.4 71 177-257 12-83 (194)
201 PF12147 Methyltransf_20: Puta 98.0 9.3E-05 2E-09 74.7 14.0 129 178-331 135-266 (311)
202 KOG1541 Predicted protein carb 98.0 3.1E-05 6.6E-10 75.1 10.0 140 160-330 30-174 (270)
203 PF03291 Pox_MCEL: mRNA cappin 98.0 1.8E-05 3.8E-10 82.2 8.9 113 178-314 62-188 (331)
204 KOG2671 Putative RNA methylase 98.0 9.3E-06 2E-10 83.0 6.3 136 167-310 197-352 (421)
205 PRK13256 thiopurine S-methyltr 98.0 5.9E-05 1.3E-09 74.2 11.3 114 175-315 40-166 (226)
206 PF10294 Methyltransf_16: Puta 98.0 2.2E-05 4.7E-10 74.0 7.7 77 177-255 44-125 (173)
207 KOG1098 Putative SAM-dependent 98.0 5.7E-06 1.2E-10 89.7 3.9 110 176-311 42-157 (780)
208 KOG2730 Methylase [General fun 97.9 4.2E-06 9.2E-11 80.9 2.6 86 178-266 94-182 (263)
209 TIGR00478 tly hemolysin TlyA f 97.9 2.1E-05 4.5E-10 77.5 7.2 44 177-222 74-118 (228)
210 COG0357 GidB Predicted S-adeno 97.9 4.3E-05 9.3E-10 74.5 8.9 74 179-255 68-141 (215)
211 KOG4300 Predicted methyltransf 97.9 3.9E-05 8.4E-10 73.8 8.3 124 174-330 72-197 (252)
212 COG4976 Predicted methyltransf 97.9 2.3E-05 5E-10 76.4 6.1 130 175-338 122-263 (287)
213 PF00891 Methyltransf_2: O-met 97.9 0.00019 4E-09 70.7 12.6 116 171-323 93-210 (241)
214 PRK11760 putative 23S rRNA C24 97.8 0.00038 8.1E-09 72.2 14.8 169 79-259 73-280 (357)
215 PF05185 PRMT5: PRMT5 arginine 97.8 6.4E-05 1.4E-09 81.0 9.5 121 179-326 187-313 (448)
216 PF01564 Spermine_synth: Sperm 97.8 7.8E-05 1.7E-09 74.3 8.7 133 171-329 70-206 (246)
217 KOG2361 Predicted methyltransf 97.8 9.3E-06 2E-10 79.6 1.7 133 155-315 51-186 (264)
218 PF05219 DREV: DREV methyltran 97.7 0.00015 3.3E-09 72.2 9.5 94 178-311 94-187 (265)
219 PF04816 DUF633: Family of unk 97.7 0.00029 6.3E-09 68.4 11.3 121 182-338 1-122 (205)
220 COG3963 Phospholipid N-methylt 97.7 0.00033 7.1E-09 65.4 11.0 112 174-314 44-158 (194)
221 PF13578 Methyltransf_24: Meth 97.7 1.2E-05 2.5E-10 69.0 1.2 75 183-258 1-78 (106)
222 KOG1253 tRNA methyltransferase 97.7 4.5E-05 9.8E-10 81.4 5.0 107 177-314 108-217 (525)
223 COG0421 SpeE Spermidine syntha 97.7 0.00038 8.2E-09 70.7 11.4 119 171-315 70-193 (282)
224 cd00315 Cyt_C5_DNA_methylase C 97.6 7.5E-05 1.6E-09 75.5 6.2 79 181-267 2-80 (275)
225 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00011 2.4E-09 73.7 6.7 88 167-259 19-107 (262)
226 TIGR01444 fkbM_fam methyltrans 97.5 0.00027 5.9E-09 63.4 7.5 58 181-239 1-58 (143)
227 KOG0820 Ribosomal RNA adenine 97.5 0.00037 8.1E-09 69.6 8.8 138 158-316 37-180 (315)
228 PF06080 DUF938: Protein of un 97.5 0.00063 1.4E-08 65.8 10.2 128 179-331 26-164 (204)
229 TIGR00497 hsdM type I restrict 97.5 0.00043 9.3E-09 75.8 10.2 147 158-308 195-351 (501)
230 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00032 7E-09 72.8 8.3 119 163-314 34-155 (380)
231 PF01795 Methyltransf_5: MraW 97.5 5.6E-05 1.2E-09 77.4 2.7 90 170-261 12-105 (310)
232 PF05724 TPMT: Thiopurine S-me 97.5 0.00035 7.5E-09 68.4 7.8 114 174-315 33-158 (218)
233 KOG3010 Methyltransferase [Gen 97.4 0.00047 1E-08 67.9 8.3 77 174-255 28-106 (261)
234 PLN02232 ubiquinone biosynthes 97.4 0.00043 9.2E-09 64.2 7.2 81 207-315 1-84 (160)
235 PF10354 DUF2431: Domain of un 97.3 0.0071 1.5E-07 56.8 14.5 140 185-338 3-150 (166)
236 COG0275 Predicted S-adenosylme 97.3 0.00058 1.3E-08 69.3 7.4 91 170-261 15-108 (314)
237 TIGR03439 methyl_EasF probable 97.2 0.0032 7E-08 65.1 12.3 128 176-329 74-211 (319)
238 PF08123 DOT1: Histone methyla 97.2 0.0021 4.5E-08 62.4 10.1 85 172-259 36-132 (205)
239 COG3897 Predicted methyltransf 97.2 0.00075 1.6E-08 64.6 6.7 70 178-255 79-148 (218)
240 PF04445 SAM_MT: Putative SAM- 97.2 0.0014 3.1E-08 64.7 8.8 88 167-258 62-160 (234)
241 PRK04148 hypothetical protein; 97.2 0.004 8.6E-08 56.5 10.4 71 174-255 12-83 (134)
242 PF06962 rRNA_methylase: Putat 97.2 0.001 2.2E-08 60.7 6.6 107 205-330 1-112 (140)
243 KOG3115 Methyltransferase-like 97.1 0.001 2.2E-08 63.9 6.7 117 178-313 60-184 (249)
244 KOG1975 mRNA cap methyltransfe 97.1 0.001 2.2E-08 68.1 7.0 132 167-330 108-249 (389)
245 PF00145 DNA_methylase: C-5 cy 97.1 0.0016 3.5E-08 66.0 8.5 77 181-267 2-79 (335)
246 KOG1500 Protein arginine N-met 97.1 0.0031 6.7E-08 64.8 10.2 75 178-258 177-252 (517)
247 PF05148 Methyltransf_8: Hypot 97.1 0.0057 1.2E-07 59.4 11.4 109 178-336 72-181 (219)
248 PF05971 Methyltransf_10: Prot 97.1 0.0017 3.7E-08 66.4 8.2 147 179-333 103-275 (299)
249 PF03059 NAS: Nicotianamine sy 97.0 0.0028 6.1E-08 64.2 8.7 105 180-311 122-229 (276)
250 PRK10611 chemotaxis methyltran 97.0 0.003 6.5E-08 64.4 8.9 108 180-312 117-262 (287)
251 PF01739 CheR: CheR methyltran 97.0 0.0008 1.7E-08 64.9 4.5 112 178-315 31-178 (196)
252 KOG0024 Sorbitol dehydrogenase 96.8 0.0074 1.6E-07 62.0 9.5 104 174-314 165-275 (354)
253 COG2384 Predicted SAM-dependen 96.8 0.036 7.9E-07 54.1 13.8 125 177-337 15-140 (226)
254 PRK00536 speE spermidine synth 96.8 0.021 4.6E-07 57.5 12.7 117 171-329 66-186 (262)
255 COG0500 SmtA SAM-dependent met 96.8 0.039 8.4E-07 46.3 12.7 109 182-320 52-163 (257)
256 COG1352 CheR Methylase of chem 96.7 0.0067 1.4E-07 61.3 9.0 108 179-312 97-241 (268)
257 COG1189 Predicted rRNA methyla 96.7 0.0038 8.3E-08 61.5 6.6 76 177-258 78-153 (245)
258 PF05891 Methyltransf_PK: AdoM 96.6 0.0045 9.7E-08 60.4 6.6 133 178-338 55-199 (218)
259 PF13679 Methyltransf_32: Meth 96.6 0.0062 1.3E-07 55.3 7.2 62 177-238 24-91 (141)
260 PF04989 CmcI: Cephalosporin h 96.6 0.0032 6.9E-08 61.1 5.0 100 157-258 10-120 (206)
261 PF11599 AviRa: RRNA methyltra 96.4 0.03 6.5E-07 54.6 10.7 84 178-261 51-180 (246)
262 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.3 0.026 5.7E-07 56.6 10.3 138 177-338 55-237 (256)
263 COG1568 Predicted methyltransf 96.3 0.013 2.8E-07 59.0 7.8 82 177-261 151-233 (354)
264 TIGR00675 dcm DNA-methyltransf 96.2 0.0064 1.4E-07 62.7 5.2 78 182-268 1-78 (315)
265 COG0270 Dcm Site-specific DNA 96.2 0.0088 1.9E-07 62.0 6.3 83 179-268 3-86 (328)
266 PF09243 Rsm22: Mitochondrial 96.2 0.021 4.6E-07 57.8 8.7 48 179-226 34-81 (274)
267 KOG1709 Guanidinoacetate methy 96.1 0.047 1E-06 53.3 10.1 114 177-321 100-213 (271)
268 COG4798 Predicted methyltransf 96.0 0.039 8.3E-07 53.1 9.0 144 172-337 42-202 (238)
269 KOG2078 tRNA modification enzy 96.0 0.003 6.6E-08 66.6 1.6 64 176-242 247-312 (495)
270 KOG1227 Putative methyltransfe 95.9 0.0066 1.4E-07 61.6 3.5 74 178-256 194-269 (351)
271 PRK10458 DNA cytosine methylas 95.8 0.029 6.2E-07 61.0 8.3 84 179-266 88-186 (467)
272 COG1064 AdhP Zn-dependent alco 95.6 0.068 1.5E-06 55.7 9.7 95 175-311 163-258 (339)
273 KOG3045 Predicted RNA methylas 95.5 0.1 2.2E-06 52.4 10.1 85 179-314 181-266 (325)
274 COG4262 Predicted spermidine s 95.5 0.13 2.8E-06 53.8 11.1 80 177-258 288-374 (508)
275 PHA01634 hypothetical protein 95.4 0.065 1.4E-06 48.2 7.5 75 178-261 28-102 (156)
276 PF03141 Methyltransf_29: Puta 95.3 0.016 3.4E-07 62.7 3.9 102 180-316 119-223 (506)
277 KOG3178 Hydroxyindole-O-methyl 94.9 0.2 4.2E-06 52.2 10.4 101 180-316 179-279 (342)
278 PRK11524 putative methyltransf 94.8 0.051 1.1E-06 55.2 5.9 75 229-315 7-82 (284)
279 PRK01747 mnmC bifunctional tRN 94.7 0.18 4E-06 57.1 10.6 139 167-338 45-225 (662)
280 PRK09880 L-idonate 5-dehydroge 94.4 0.33 7.2E-06 50.0 11.0 99 175-314 166-268 (343)
281 PF10237 N6-adenineMlase: Prob 94.3 0.26 5.7E-06 46.2 8.9 120 166-328 12-135 (162)
282 KOG2782 Putative SAM dependent 94.1 0.022 4.8E-07 55.5 1.4 93 170-263 35-132 (303)
283 KOG1501 Arginine N-methyltrans 94.1 0.11 2.3E-06 55.5 6.3 60 180-241 68-128 (636)
284 COG1063 Tdh Threonine dehydrog 93.8 0.1 2.3E-06 54.5 5.9 102 177-314 167-271 (350)
285 PRK11524 putative methyltransf 93.5 0.15 3.3E-06 51.7 6.2 46 177-225 207-252 (284)
286 COG3129 Predicted SAM-dependen 93.4 0.11 2.4E-06 51.2 4.8 85 177-262 77-166 (292)
287 PRK13699 putative methylase; P 93.4 0.26 5.7E-06 48.5 7.5 92 232-338 3-94 (227)
288 TIGR02822 adh_fam_2 zinc-bindi 93.1 0.68 1.5E-05 47.6 10.5 93 174-312 161-254 (329)
289 cd08283 FDH_like_1 Glutathione 92.8 0.39 8.5E-06 50.5 8.4 49 173-222 179-228 (386)
290 KOG1269 SAM-dependent methyltr 92.8 0.15 3.3E-06 53.7 5.2 108 172-310 104-213 (364)
291 cd08237 ribitol-5-phosphate_DH 92.6 0.83 1.8E-05 47.2 10.3 95 175-313 160-257 (341)
292 PF01555 N6_N4_Mtase: DNA meth 92.3 0.27 5.8E-06 46.8 5.8 43 176-221 189-231 (231)
293 PRK12939 short chain dehydroge 92.1 2 4.3E-05 41.4 11.7 78 178-257 6-92 (250)
294 PRK07523 gluconate 5-dehydroge 92.0 2.9 6.3E-05 40.7 12.9 80 178-259 9-97 (255)
295 PF07279 DUF1442: Protein of u 91.8 1.3 2.9E-05 43.3 9.9 77 179-257 42-123 (218)
296 PF00107 ADH_zinc_N: Zinc-bind 91.8 0.4 8.6E-06 41.8 5.9 88 188-315 1-92 (130)
297 PF07091 FmrO: Ribosomal RNA m 91.8 0.73 1.6E-05 46.1 8.2 73 178-255 105-177 (251)
298 PRK07533 enoyl-(acyl carrier p 91.7 3 6.5E-05 41.0 12.7 79 178-258 9-97 (258)
299 COG2933 Predicted SAM-dependen 91.7 0.37 8.1E-06 48.4 6.0 70 176-257 209-278 (358)
300 PRK08213 gluconate 5-dehydroge 91.6 3.8 8.2E-05 40.0 13.2 81 178-260 11-100 (259)
301 PRK07326 short chain dehydroge 91.6 1.9 4.1E-05 41.3 10.9 77 178-257 5-90 (237)
302 PRK13699 putative methylase; P 91.6 0.44 9.5E-06 47.0 6.4 49 176-227 161-209 (227)
303 PRK08945 putative oxoacyl-(acy 91.4 2.5 5.5E-05 40.9 11.6 82 176-258 9-101 (247)
304 cd08230 glucose_DH Glucose deh 91.4 1.1 2.3E-05 46.3 9.5 96 176-312 170-269 (355)
305 PRK07576 short chain dehydroge 91.3 3.1 6.7E-05 41.0 12.3 78 178-257 8-94 (264)
306 KOG1562 Spermidine synthase [A 91.2 0.39 8.5E-06 49.0 5.7 123 178-329 121-247 (337)
307 PRK09424 pntA NAD(P) transhydr 91.0 2.4 5.1E-05 46.9 12.0 179 96-314 81-287 (509)
308 PRK08085 gluconate 5-dehydroge 91.0 4.4 9.5E-05 39.4 12.9 81 178-260 8-97 (254)
309 PRK12429 3-hydroxybutyrate deh 91.0 3.2 7E-05 40.1 11.9 78 179-258 4-90 (258)
310 KOG3987 Uncharacterized conser 91.0 0.11 2.5E-06 50.4 1.6 40 178-220 112-151 (288)
311 PRK07666 fabG 3-ketoacyl-(acyl 90.9 4.7 0.0001 38.7 12.9 79 179-259 7-94 (239)
312 cd08281 liver_ADH_like1 Zinc-d 90.9 0.67 1.4E-05 48.3 7.4 99 174-312 187-290 (371)
313 PRK06949 short chain dehydroge 90.8 4.1 8.8E-05 39.5 12.5 79 178-258 8-95 (258)
314 PLN03209 translocon at the inn 90.7 3.8 8.1E-05 45.9 13.3 82 175-257 76-167 (576)
315 TIGR03451 mycoS_dep_FDH mycoth 90.6 1.3 2.8E-05 45.9 9.2 99 174-312 172-276 (358)
316 PRK05786 fabG 3-ketoacyl-(acyl 90.6 4.2 9.1E-05 38.9 12.3 78 178-258 4-90 (238)
317 COG2961 ComJ Protein involved 90.6 3.1 6.8E-05 41.7 11.2 116 183-331 93-210 (279)
318 PRK08251 short chain dehydroge 90.5 7.6 0.00017 37.4 14.1 81 179-260 2-92 (248)
319 cd08254 hydroxyacyl_CoA_DH 6-h 90.4 1.1 2.4E-05 45.2 8.4 97 175-311 162-262 (338)
320 PRK09186 flagellin modificatio 90.4 3.7 8.1E-05 39.7 11.8 80 178-258 3-92 (256)
321 PRK07831 short chain dehydroge 90.3 5.5 0.00012 38.9 12.9 81 178-258 16-106 (262)
322 PRK08594 enoyl-(acyl carrier p 90.2 5.1 0.00011 39.5 12.7 81 178-258 6-96 (257)
323 COG0677 WecC UDP-N-acetyl-D-ma 90.1 2.4 5.2E-05 45.2 10.4 115 188-331 16-146 (436)
324 PF04672 Methyltransf_19: S-ad 90.0 1.2 2.6E-05 45.1 8.0 114 179-315 69-193 (267)
325 PRK07102 short chain dehydroge 90.0 4.5 9.8E-05 39.0 12.0 77 181-258 3-85 (243)
326 KOG4174 Uncharacterized conser 89.9 23 0.00051 35.7 16.6 189 178-386 56-259 (282)
327 TIGR03366 HpnZ_proposed putati 89.9 1.5 3.2E-05 43.9 8.7 101 174-312 116-218 (280)
328 TIGR01963 PHB_DH 3-hydroxybuty 89.9 5.9 0.00013 38.1 12.7 78 181-260 3-89 (255)
329 PRK12937 short chain dehydroge 89.9 4.5 9.7E-05 38.8 11.8 126 178-316 4-143 (245)
330 TIGR02825 B4_12hDH leukotriene 89.9 1.4 3E-05 44.7 8.6 51 174-230 134-186 (325)
331 PRK08339 short chain dehydroge 89.8 8.3 0.00018 38.1 13.9 79 178-257 7-93 (263)
332 PRK07904 short chain dehydroge 89.7 4.4 9.6E-05 39.8 11.8 80 177-257 6-95 (253)
333 PLN02740 Alcohol dehydrogenase 89.7 1.6 3.4E-05 45.8 9.1 51 174-230 194-246 (381)
334 PF03492 Methyltransf_7: SAM d 89.7 2.1 4.5E-05 44.7 9.8 131 179-317 17-188 (334)
335 PRK10309 galactitol-1-phosphat 89.6 2 4.4E-05 44.0 9.6 98 175-312 157-260 (347)
336 PRK12829 short chain dehydroge 89.5 6.6 0.00014 38.1 12.7 80 175-258 7-95 (264)
337 TIGR03201 dearomat_had 6-hydro 89.4 1.9 4.1E-05 44.5 9.3 51 174-230 162-213 (349)
338 PRK08415 enoyl-(acyl carrier p 89.4 8.4 0.00018 38.5 13.6 79 178-258 4-92 (274)
339 PF03721 UDPG_MGDP_dh_N: UDP-g 89.3 0.67 1.4E-05 44.2 5.3 118 188-331 7-138 (185)
340 PRK05599 hypothetical protein; 89.2 7.5 0.00016 37.9 12.9 76 181-257 2-85 (246)
341 cd08239 THR_DH_like L-threonin 89.2 1.5 3.3E-05 44.7 8.3 98 174-311 159-261 (339)
342 PRK06194 hypothetical protein; 89.0 6.3 0.00014 39.0 12.4 83 179-263 6-97 (287)
343 PLN02668 indole-3-acetate carb 88.9 5.7 0.00012 42.4 12.4 19 179-197 64-82 (386)
344 PRK08267 short chain dehydroge 88.8 5.5 0.00012 38.9 11.7 76 181-260 3-88 (260)
345 PRK07774 short chain dehydroge 88.8 7 0.00015 37.7 12.3 80 178-259 5-93 (250)
346 PRK06181 short chain dehydroge 88.5 7.3 0.00016 38.0 12.3 76 180-257 2-86 (263)
347 TIGR01202 bchC 2-desacetyl-2-h 88.4 2.7 5.8E-05 42.7 9.4 88 177-312 143-231 (308)
348 PRK07062 short chain dehydroge 88.4 13 0.00027 36.4 13.9 80 178-258 7-96 (265)
349 PLN02827 Alcohol dehydrogenase 88.3 1.7 3.6E-05 45.7 8.1 101 174-312 189-295 (378)
350 PRK06505 enoyl-(acyl carrier p 88.2 9.7 0.00021 37.9 13.1 78 178-257 6-93 (271)
351 cd08238 sorbose_phosphate_red 88.2 2.5 5.4E-05 44.9 9.4 48 175-222 172-222 (410)
352 KOG3201 Uncharacterized conser 88.1 0.75 1.6E-05 43.2 4.6 78 178-255 29-109 (201)
353 PRK13394 3-hydroxybutyrate deh 88.0 7.3 0.00016 37.8 11.9 81 178-260 6-95 (262)
354 PRK08063 enoyl-(acyl carrier p 88.0 10 0.00023 36.4 12.9 80 178-259 3-92 (250)
355 PRK06940 short chain dehydroge 87.9 9.9 0.00021 37.8 13.0 76 180-258 3-85 (275)
356 PRK07677 short chain dehydroge 87.8 11 0.00023 36.7 12.9 79 179-259 1-88 (252)
357 PRK07109 short chain dehydroge 87.7 12 0.00026 38.6 13.8 80 178-259 7-95 (334)
358 PRK06196 oxidoreductase; Provi 87.6 7.2 0.00016 39.6 12.1 76 178-259 25-109 (315)
359 PRK05867 short chain dehydroge 87.6 6.5 0.00014 38.2 11.2 79 178-258 8-95 (253)
360 PRK09135 pteridine reductase; 87.5 8.3 0.00018 36.9 11.9 80 178-258 5-94 (249)
361 PRK07454 short chain dehydroge 87.5 10 0.00022 36.4 12.5 77 179-257 6-91 (241)
362 PRK07832 short chain dehydroge 87.3 6 0.00013 39.0 11.0 76 182-258 3-87 (272)
363 PRK12384 sorbitol-6-phosphate 87.3 7.8 0.00017 37.7 11.6 79 179-258 2-90 (259)
364 PF07942 N2227: N2227-like pro 87.2 7.9 0.00017 39.3 11.7 44 177-223 55-98 (270)
365 PRK05855 short chain dehydroge 87.0 8.7 0.00019 41.9 13.0 81 179-261 315-404 (582)
366 PRK06914 short chain dehydroge 86.8 15 0.00033 36.2 13.5 83 179-262 3-94 (280)
367 PLN03154 putative allyl alcoho 86.7 3.1 6.7E-05 43.1 8.8 52 174-230 154-207 (348)
368 PRK07984 enoyl-(acyl carrier p 86.4 13 0.00028 36.9 12.9 79 178-258 5-93 (262)
369 PRK08340 glucose-1-dehydrogena 86.4 14 0.00031 36.0 13.0 75 181-258 2-85 (259)
370 PRK07814 short chain dehydroge 86.3 12 0.00027 36.6 12.5 78 178-257 9-95 (263)
371 PRK08324 short chain dehydroge 86.2 13 0.00028 42.4 14.3 80 178-260 421-509 (681)
372 PRK09242 tropinone reductase; 86.0 19 0.00041 35.0 13.6 128 178-315 8-149 (257)
373 TIGR02415 23BDH acetoin reduct 86.0 8.3 0.00018 37.2 11.0 80 182-263 3-91 (254)
374 PRK07024 short chain dehydroge 85.9 10 0.00022 37.0 11.7 76 180-258 3-87 (257)
375 KOG1331 Predicted methyltransf 85.8 1.4 2.9E-05 44.9 5.3 96 178-311 45-143 (293)
376 PRK06079 enoyl-(acyl carrier p 85.6 9.3 0.0002 37.4 11.2 77 178-258 6-92 (252)
377 PRK07889 enoyl-(acyl carrier p 85.4 7 0.00015 38.4 10.3 77 178-258 6-94 (256)
378 PRK07097 gluconate 5-dehydroge 85.3 21 0.00045 35.0 13.6 80 178-259 9-97 (265)
379 PRK08703 short chain dehydroge 85.2 9.4 0.0002 36.7 10.9 80 178-258 5-96 (239)
380 PF00106 adh_short: short chai 85.0 6.3 0.00014 35.4 9.0 80 182-263 3-94 (167)
381 PRK06603 enoyl-(acyl carrier p 85.0 14 0.0003 36.4 12.2 79 178-258 7-95 (260)
382 cd08300 alcohol_DH_class_III c 84.8 4.8 0.0001 41.9 9.2 51 174-230 182-234 (368)
383 KOG1197 Predicted quinone oxid 84.6 3.1 6.7E-05 42.0 7.1 77 173-254 141-220 (336)
384 PRK08589 short chain dehydroge 84.5 21 0.00046 35.2 13.3 79 178-259 5-92 (272)
385 PRK06172 short chain dehydroge 84.5 19 0.0004 34.9 12.7 78 178-257 6-92 (253)
386 PRK06139 short chain dehydroge 84.3 21 0.00046 36.8 13.6 81 178-260 6-95 (330)
387 TIGR02818 adh_III_F_hyde S-(hy 84.2 3.7 7.9E-05 42.8 8.0 50 174-230 181-233 (368)
388 PRK06113 7-alpha-hydroxysteroi 84.0 21 0.00045 34.7 12.9 80 178-259 10-98 (255)
389 cd08277 liver_alcohol_DH_like 84.0 4.5 9.8E-05 42.0 8.5 50 175-231 181-233 (365)
390 PF04378 RsmJ: Ribosomal RNA s 84.0 2.5 5.4E-05 42.3 6.2 115 185-330 62-178 (245)
391 PRK08643 acetoin reductase; Va 83.7 28 0.00061 33.7 13.6 77 179-257 2-87 (256)
392 COG1062 AdhC Zn-dependent alco 83.6 6.2 0.00014 41.3 9.1 109 170-314 177-287 (366)
393 TIGR01832 kduD 2-deoxy-D-gluco 83.6 14 0.0003 35.6 11.3 78 178-259 4-90 (248)
394 PRK08159 enoyl-(acyl carrier p 83.5 17 0.00036 36.2 12.1 79 178-258 9-97 (272)
395 COG5459 Predicted rRNA methyla 83.5 1.6 3.5E-05 45.8 4.7 45 180-225 115-159 (484)
396 PRK12742 oxidoreductase; Provi 83.5 15 0.00033 34.9 11.5 74 178-258 5-84 (237)
397 PRK06997 enoyl-(acyl carrier p 83.5 19 0.0004 35.5 12.3 79 178-258 5-93 (260)
398 PRK07890 short chain dehydroge 83.4 25 0.00053 34.0 13.1 79 178-258 4-91 (258)
399 PRK06197 short chain dehydroge 83.4 21 0.00045 36.0 12.9 80 178-258 15-104 (306)
400 PRK06701 short chain dehydroge 83.3 17 0.00036 36.6 12.2 123 178-313 45-182 (290)
401 PRK05653 fabG 3-ketoacyl-(acyl 83.3 26 0.00057 33.2 13.0 78 179-258 5-91 (246)
402 PRK06077 fabG 3-ketoacyl-(acyl 83.0 27 0.00058 33.5 13.1 124 179-315 6-143 (252)
403 TIGR03589 PseB UDP-N-acetylglu 83.0 16 0.00034 37.5 12.0 76 179-258 4-83 (324)
404 PRK12826 3-ketoacyl-(acyl-carr 82.9 30 0.00065 33.0 13.4 80 179-260 6-94 (251)
405 PRK06124 gluconate 5-dehydroge 82.9 30 0.00066 33.4 13.5 79 178-258 10-97 (256)
406 PRK12859 3-ketoacyl-(acyl-carr 82.7 22 0.00047 34.7 12.4 82 178-260 5-107 (256)
407 PLN02896 cinnamyl-alcohol dehy 82.6 20 0.00042 37.0 12.6 82 178-262 9-92 (353)
408 PRK05993 short chain dehydroge 82.6 17 0.00037 36.0 11.8 72 179-258 4-85 (277)
409 PRK12743 oxidoreductase; Provi 82.5 18 0.00039 35.2 11.7 77 179-257 2-88 (256)
410 PRK05875 short chain dehydroge 82.1 23 0.0005 34.7 12.5 81 178-259 6-96 (276)
411 PRK05876 short chain dehydroge 82.0 31 0.00067 34.3 13.4 80 178-259 5-93 (275)
412 cd05285 sorbitol_DH Sorbitol d 82.0 7.7 0.00017 39.6 9.3 102 173-311 157-264 (343)
413 PRK07063 short chain dehydroge 81.9 34 0.00073 33.2 13.4 80 178-258 6-95 (260)
414 cd08278 benzyl_alcohol_DH Benz 81.8 8.9 0.00019 39.8 9.8 97 175-311 183-284 (365)
415 PRK12744 short chain dehydroge 81.8 19 0.00041 35.0 11.6 125 178-315 7-148 (257)
416 PLN02780 ketoreductase/ oxidor 81.6 27 0.00059 35.9 13.1 61 178-239 52-114 (320)
417 PRK06179 short chain dehydroge 81.6 12 0.00025 36.8 10.0 71 179-259 4-83 (270)
418 cd08301 alcohol_DH_plants Plan 81.5 6.3 0.00014 40.9 8.5 51 174-230 183-235 (369)
419 PRK06125 short chain dehydroge 81.4 44 0.00096 32.4 14.0 79 178-257 6-89 (259)
420 cd08242 MDR_like Medium chain 81.2 12 0.00026 37.6 10.2 92 174-310 151-243 (319)
421 PRK06182 short chain dehydroge 81.1 18 0.00039 35.5 11.3 73 179-259 3-84 (273)
422 PRK07060 short chain dehydroge 81.0 18 0.00039 34.6 11.0 77 178-261 8-89 (245)
423 KOG2940 Predicted methyltransf 81.0 1.8 4E-05 42.9 3.9 72 178-255 72-143 (325)
424 PRK05872 short chain dehydroge 80.8 36 0.00078 34.2 13.5 79 178-259 8-95 (296)
425 cd00401 AdoHcyase S-adenosyl-L 80.7 9 0.00019 41.3 9.4 88 177-312 200-289 (413)
426 TIGR03206 benzo_BadH 2-hydroxy 80.7 38 0.00082 32.4 13.2 80 179-260 3-91 (250)
427 PRK07067 sorbitol dehydrogenas 80.6 26 0.00056 34.0 12.1 75 179-258 6-89 (257)
428 cd08231 MDR_TM0436_like Hypoth 80.6 9.3 0.0002 39.3 9.4 97 177-311 176-279 (361)
429 KOG0822 Protein kinase inhibit 80.6 3.2 7E-05 45.6 5.9 72 181-255 370-445 (649)
430 PRK06482 short chain dehydroge 80.4 21 0.00046 35.1 11.5 75 181-260 4-87 (276)
431 PRK05565 fabG 3-ketoacyl-(acyl 80.4 25 0.00054 33.5 11.8 80 179-260 5-94 (247)
432 PF11968 DUF3321: Putative met 79.9 2.9 6.4E-05 41.0 4.9 131 165-337 30-178 (219)
433 PLN02989 cinnamyl-alcohol dehy 79.7 20 0.00044 36.2 11.4 77 178-257 4-85 (325)
434 PRK06114 short chain dehydroge 79.7 23 0.00051 34.3 11.4 79 178-258 7-95 (254)
435 cd08293 PTGR2 Prostaglandin re 79.6 7.4 0.00016 39.6 8.2 74 176-255 150-230 (345)
436 PLN02586 probable cinnamyl alc 79.6 10 0.00022 39.5 9.2 94 176-311 181-277 (360)
437 PRK08278 short chain dehydroge 79.6 25 0.00054 34.8 11.7 81 178-260 5-101 (273)
438 PRK06935 2-deoxy-D-gluconate 3 79.5 31 0.00067 33.5 12.2 79 178-259 14-101 (258)
439 PRK09291 short chain dehydroge 79.4 37 0.0008 32.7 12.7 77 180-258 3-82 (257)
440 PRK06057 short chain dehydroge 79.3 19 0.00042 34.9 10.7 74 178-258 6-88 (255)
441 cd08232 idonate-5-DH L-idonate 79.3 11 0.00023 38.3 9.2 52 174-230 161-213 (339)
442 PRK08303 short chain dehydroge 79.1 49 0.0011 33.7 13.9 78 178-257 7-103 (305)
443 PRK07231 fabG 3-ketoacyl-(acyl 79.0 41 0.00089 32.1 12.8 78 179-259 5-91 (251)
444 PRK07478 short chain dehydroge 78.9 44 0.00096 32.3 13.1 79 179-259 6-93 (254)
445 KOG1201 Hydroxysteroid 17-beta 78.7 29 0.00063 35.7 11.8 121 178-315 37-174 (300)
446 cd08294 leukotriene_B4_DH_like 78.7 8 0.00017 38.9 8.0 97 174-311 139-240 (329)
447 PRK09072 short chain dehydroge 78.6 28 0.00061 33.9 11.7 79 178-259 4-90 (263)
448 TIGR02632 RhaD_aldol-ADH rhamn 78.6 40 0.00087 38.6 14.4 82 178-260 413-504 (676)
449 PRK08263 short chain dehydroge 78.6 35 0.00075 33.6 12.4 75 179-258 3-86 (275)
450 PRK07370 enoyl-(acyl carrier p 78.4 14 0.00031 36.2 9.5 80 178-258 5-96 (258)
451 PRK08217 fabG 3-ketoacyl-(acyl 78.2 64 0.0014 30.7 14.3 79 178-258 4-91 (253)
452 cd08295 double_bond_reductase_ 78.0 10 0.00022 38.7 8.6 53 174-231 147-201 (338)
453 PF05430 Methyltransf_30: S-ad 78.0 2 4.3E-05 38.5 2.9 77 231-338 33-109 (124)
454 cd05188 MDR Medium chain reduc 77.9 14 0.0003 35.5 9.1 42 177-220 133-175 (271)
455 PRK07775 short chain dehydroge 77.8 47 0.001 32.7 13.1 77 180-258 11-96 (274)
456 PRK05866 short chain dehydroge 77.4 52 0.0011 33.1 13.4 77 179-257 40-125 (293)
457 PF05711 TylF: Macrocin-O-meth 77.4 4.2 9.1E-05 40.8 5.3 123 180-333 76-231 (248)
458 PRK05717 oxidoreductase; Valid 77.2 35 0.00076 33.1 11.8 78 178-260 9-95 (255)
459 cd08236 sugar_DH NAD(P)-depend 77.2 12 0.00026 38.0 8.9 102 173-311 154-257 (343)
460 PF13561 adh_short_C2: Enoyl-( 76.9 7.3 0.00016 37.7 6.8 118 186-313 1-134 (241)
461 KOG1205 Predicted dehydrogenas 76.8 33 0.00072 35.1 11.7 84 178-262 11-104 (282)
462 PRK06138 short chain dehydroge 76.8 65 0.0014 30.8 13.5 79 179-260 5-92 (252)
463 PF01555 N6_N4_Mtase: DNA meth 76.8 2.3 5E-05 40.3 3.2 80 250-338 1-81 (231)
464 PRK12746 short chain dehydroge 76.8 43 0.00093 32.3 12.2 77 179-257 6-98 (254)
465 PF05050 Methyltransf_21: Meth 76.7 6 0.00013 35.5 5.8 43 184-226 1-48 (167)
466 PRK08690 enoyl-(acyl carrier p 76.7 28 0.00061 34.2 11.1 79 178-258 5-93 (261)
467 cd05278 FDH_like Formaldehyde 76.6 13 0.00029 37.6 9.0 45 175-220 164-209 (347)
468 PRK07453 protochlorophyllide o 76.4 50 0.0011 33.5 13.1 79 178-258 5-92 (322)
469 cd08255 2-desacetyl-2-hydroxye 76.3 18 0.00039 35.4 9.6 47 173-220 92-139 (277)
470 KOG2352 Predicted spermine/spe 76.3 16 0.00035 39.9 9.7 117 177-314 46-163 (482)
471 TIGR02819 fdhA_non_GSH formald 76.3 17 0.00036 38.6 9.8 111 174-312 181-299 (393)
472 COG0604 Qor NADPH:quinone redu 76.1 9.2 0.0002 39.6 7.7 102 175-315 139-244 (326)
473 PLN02702 L-idonate 5-dehydroge 76.0 20 0.00044 36.9 10.3 99 174-311 177-284 (364)
474 PRK07806 short chain dehydroge 75.7 59 0.0013 31.2 12.9 78 179-258 6-93 (248)
475 TIGR03026 NDP-sugDHase nucleot 75.6 24 0.00051 37.7 10.8 117 188-330 7-137 (411)
476 COG4221 Short-chain alcohol de 75.5 49 0.0011 33.2 12.1 75 179-257 6-89 (246)
477 PLN00198 anthocyanidin reducta 75.3 34 0.00074 34.9 11.6 80 174-257 4-88 (338)
478 PRK05650 short chain dehydroge 75.3 57 0.0012 31.9 12.8 76 181-258 2-86 (270)
479 KOG3673 FtsJ-like RNA methyltr 75.2 9.1 0.0002 42.2 7.4 45 248-309 351-397 (845)
480 PLN02253 xanthoxin dehydrogena 74.9 40 0.00086 33.2 11.7 78 178-258 17-103 (280)
481 PLN02514 cinnamyl-alcohol dehy 74.7 16 0.00035 37.8 9.1 93 177-311 179-274 (357)
482 PRK12748 3-ketoacyl-(acyl-carr 74.7 44 0.00095 32.4 11.8 78 179-258 5-104 (256)
483 PLN02178 cinnamyl-alcohol dehy 74.6 11 0.00024 39.6 7.9 92 177-311 177-272 (375)
484 PRK08862 short chain dehydroge 74.4 74 0.0016 30.7 13.2 78 178-257 4-91 (227)
485 PRK15182 Vi polysaccharide bio 74.3 13 0.00028 40.2 8.4 113 188-330 13-137 (425)
486 PRK07791 short chain dehydroge 74.3 75 0.0016 31.7 13.6 79 178-258 5-101 (286)
487 cd08234 threonine_DH_like L-th 74.2 23 0.0005 35.6 10.0 98 173-310 154-255 (334)
488 PRK06101 short chain dehydroge 74.2 39 0.00084 32.5 11.2 72 181-258 3-80 (240)
489 PF06460 NSP13: Coronavirus NS 74.1 6 0.00013 39.9 5.3 67 175-258 58-130 (299)
490 PRK06500 short chain dehydroge 74.1 57 0.0012 31.1 12.3 76 179-259 6-90 (249)
491 TIGR02622 CDP_4_6_dhtase CDP-g 74.0 22 0.00048 36.5 9.9 77 179-258 4-84 (349)
492 TIGR01289 LPOR light-dependent 73.5 45 0.00097 33.9 11.9 78 179-258 3-90 (314)
493 cd08296 CAD_like Cinnamyl alco 73.5 12 0.00027 38.0 7.8 98 174-311 159-258 (333)
494 PRK08265 short chain dehydroge 73.5 60 0.0013 31.7 12.4 76 178-258 5-89 (261)
495 PRK08277 D-mannonate oxidoredu 73.2 97 0.0021 30.4 14.4 79 178-258 9-96 (278)
496 PRK10538 malonic semialdehyde 73.1 32 0.00069 33.3 10.3 71 182-257 3-82 (248)
497 TIGR03325 BphB_TodD cis-2,3-di 73.1 29 0.00063 33.9 10.1 76 178-258 4-88 (262)
498 cd08261 Zn_ADH7 Alcohol dehydr 73.1 31 0.00067 34.9 10.6 44 174-219 155-199 (337)
499 KOG2352 Predicted spermine/spe 73.0 5.5 0.00012 43.4 5.2 130 179-327 296-431 (482)
500 PLN02662 cinnamyl-alcohol dehy 72.7 50 0.0011 33.1 12.0 79 179-260 4-87 (322)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=4.1e-87 Score=681.14 Aligned_cols=374 Identities=68% Similarity=1.049 Sum_probs=359.8
Q ss_pred cccccccccccCCChHHHHHhhcCCCChhHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHhHhHHHHhcChHHHHHHH
Q 011002 3 LNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFLIGAL 82 (496)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~p~wl~~~l 82 (496)
+|+.++.+.|.||+.++.++. ..++|++.++.||.+++.+|.+|+.++.+++++..|+..+..+++.||+|..++++.+
T Consensus 67 ~~~~~~~~~l~lp~~~~~~~~-~~~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~ 145 (460)
T KOG1122|consen 67 TNTFEEGDPLLLPTLEEEEEK-DSVPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKL 145 (460)
T ss_pred hccccccccccCccccccccc-ccCCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHh
Confidence 456677899999999965554 4455999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccceEEE
Q 011002 83 VEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYML 162 (496)
Q Consensus 83 ~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~~~~i~~~~~~~~G~~~i 162 (496)
.+.|+..++.+|+++++.++|+++|.||+|+.+++++..|.++|+.++|.++|+++|++++++.++++++|+|++|+|++
T Consensus 146 ~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~L 225 (460)
T KOG1122|consen 146 MELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYML 225 (460)
T ss_pred cccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc
Q 011002 163 QSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~ 242 (496)
|+++|+|++++|+||||++||||||||||||+|||++|+++|.|+|+|.+..|++.+..|++++|+.|.+++++|++.+|
T Consensus 226 Q~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 226 QNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -cccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 011002 243 -KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 243 -~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE 321 (496)
..+. ++||+||+||||||+|++.|+++++|.++..++..+.++|++||.+|+++| ++||+|||||||++++|||
T Consensus 306 ~~~~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv----~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 306 EKEFP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLV----KAGGVLVYSTCSITVEENE 380 (460)
T ss_pred ccccC-cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhc----cCCcEEEEEeeecchhhhH
Confidence 4454 489999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEecC
Q 011002 322 AVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMS 384 (496)
Q Consensus 322 ~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~ 384 (496)
+||+|+|.++ .++++|+++.+|.+| .|++++|||++..+.|+|||.|++||||+|+|+|.+
T Consensus 381 ~vV~yaL~K~p~~kL~p~~~~iG~~G--~~~~~~~~psl~~~~r~yPh~hnmdgffvaKl~k~s 442 (460)
T KOG1122|consen 381 AVVDYALKKRPEVKLVPTGLDIGGEG--RFRGGRFHPSLKLTRRFYPHVHNMDGFFVAKLKKAS 442 (460)
T ss_pred HHHHHHHHhCCceEeccccccCCCCC--cccCcccCcchhheeeecCcccCCchHHHHHHHhhc
Confidence 9999999998 899999999999999 789999999999999999999999999999999998
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-67 Score=542.37 Aligned_cols=302 Identities=42% Similarity=0.661 Sum_probs=271.8
Q ss_pred HHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCC
Q 011002 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPI 149 (496)
Q Consensus 70 ~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~~~~i 149 (496)
..|+||.|+++.|.+.||.+++++++++++.++|+++|||+++.+++++...|...|+...+. .+...++.+ ....++
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~-~~~~~~~~i-~~~~~~ 127 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKP-WVLDEVLRI-EASGPI 127 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccC-CccccEEEe-cCCCCc
Confidence 679999999999999999999999999999999999999999999999999999999887776 455555555 455688
Q ss_pred CCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC
Q 011002 150 GATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV 228 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~ 228 (496)
..+++|..|+|++||.+||+++.+|+|+||++||||||||||||+|||++|.+.| .|+|+|+++.|++.+++|++|+|+
T Consensus 128 ~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 128 GRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999855 459999999999999999999999
Q ss_pred ceEEEEecCCCCCccccCCC-CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 229 TNTIVCNYDGNELPKVLGLN-TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~l~~~~~~~-~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
.|+.+++.|++.++.....+ .||+||+||||||+|++++||+++|.++..++..++.+|++||.+|+++| ||||+
T Consensus 208 ~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~l----k~GG~ 283 (355)
T COG0144 208 RNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLL----KPGGV 283 (355)
T ss_pred CceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CCCCE
Confidence 99999999998876554333 59999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEec
Q 011002 308 IVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 308 LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|||||||++++|||+||.+||+++ ++++++....++. ++... . +....++|+|||.|.+||||+|+|+|.
T Consensus 284 LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 284 LVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGP-LFEGL----G-SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred EEEEccCCchhcCHHHHHHHHHhCCCceeecccccccc-ccccc----c-cccCCeEEECCCCCCCCCeEEEEEEeC
Confidence 999999999999999999999987 8889887655432 22111 1 345678999999998899999999986
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=6.4e-65 Score=541.64 Aligned_cols=300 Identities=37% Similarity=0.595 Sum_probs=269.1
Q ss_pred hcChHHHHHHHHHhCCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC---CC
Q 011002 72 YGYNEFLIGALVEMFPP-VELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS---QV 147 (496)
Q Consensus 72 y~~p~wl~~~l~~~~~~-~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~---~~ 147 (496)
..+|.|++++|..+||. +++.+|+++++.++|.+||||++|++++++.+.|.+.|+.++|+ +|++.|+++... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~-p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPI-PWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeEC-CCCCceEEEecCccccC
Confidence 35899999999999997 68999999999999999999999999999999999999999998 899999987543 23
Q ss_pred CCCCCcccccceEEEecCcchhHHHhc--CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 148 PIGATPEYMAGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 148 ~i~~~~~~~~G~~~iQd~sS~l~v~~L--~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
.++.+++|..|+|++||+|||+++.+| ++++|++||||||||||||++||++|++.|.|+|+|+++.|++.+++|+++
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011002 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpG 305 (496)
+|+.||.+++.|+..+...+ ...||+||+||||||+|+++++|+++|.|+++++..++.+|++||.+|+++| |||
T Consensus 161 ~G~~nv~v~~~D~~~~~~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L----kpG 235 (470)
T PRK11933 161 CGVSNVALTHFDGRVFGAAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL----KPG 235 (470)
T ss_pred cCCCeEEEEeCchhhhhhhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc----CCC
Confidence 99999999999998875444 2679999999999999999999999999999999999999999999999998 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-C-cEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEec
Q 011002 306 GYIVYSTCSIMVTENEAVIDYALKKR-D-VKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 306 G~LVYSTCSl~~eENE~vV~~~L~~~-~-~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
|+|||||||++++|||+||++||+++ + ++++++...+ +|+.. ......++|++||.+++||||+|+|+|.
T Consensus 236 G~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~r~~P~~~~~dGfFiA~lrk~ 307 (470)
T PRK11933 236 GTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLF--PGAEK------ALTEEGFLHVFPQIYDSEGFFVARLRKT 307 (470)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccc--ccccc------ccCCCCeEEECCCCCCCcceeeEEEEec
Confidence 99999999999999999999999987 4 4555543211 12110 0123457899999999999999999997
Q ss_pred CC
Q 011002 384 SN 385 (496)
Q Consensus 384 ~~ 385 (496)
..
T Consensus 308 ~~ 309 (470)
T PRK11933 308 AS 309 (470)
T ss_pred CC
Confidence 54
No 4
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.1e-60 Score=502.81 Aligned_cols=302 Identities=26% Similarity=0.434 Sum_probs=271.1
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 011002 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~ 145 (496)
.+++..||||.||+++|.+.||.+++.++++++++++|+++|||++|++++++.+.|...|+.+++. +|++.++.+...
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPG-KHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEEC-CCCCceEEEcCC
Confidence 4688899999999999999999999999999999999999999999999999999999999998887 799999887553
Q ss_pred CCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
..++..+++|..|+|++||.+|++++.++++++|.+|||+|||||+||++++.++++.|.|+|+|+++.|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011002 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG 305 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpG 305 (496)
+|+.++.++++|+..++... .+.||+||+||||||+|+++++|+++|.++..++..+..+|+++|.+++++| +||
T Consensus 285 ~g~~~v~~~~~Da~~l~~~~-~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L----kpG 359 (431)
T PRK14903 285 LKLSSIEIKIADAERLTEYV-QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLL----EKG 359 (431)
T ss_pred cCCCeEEEEECchhhhhhhh-hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 99999999999998775322 3679999999999999999999999999999999999999999999999998 999
Q ss_pred cEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCc---CCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEE
Q 011002 306 GYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLD---FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 306 G~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~---~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
|+|||||||++++|||+||.+||+++ +++++++... ++.+|+ + ....+|++||. ++||||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~P~~-~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI--W--------DGYGFLMLPDE-TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc--c--------CCCcEEECcCC-CCCcEEEEEEE
Confidence 99999999999999999999999876 7887765321 111221 0 01126999995 78999999999
Q ss_pred ecC
Q 011002 382 KMS 384 (496)
Q Consensus 382 K~~ 384 (496)
|.+
T Consensus 429 k~~ 431 (431)
T PRK14903 429 KMG 431 (431)
T ss_pred eCC
Confidence 863
No 5
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.8e-60 Score=502.09 Aligned_cols=291 Identities=34% Similarity=0.526 Sum_probs=267.5
Q ss_pred HhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecC
Q 011002 66 LDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 145 (496)
Q Consensus 66 ~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~ 145 (496)
.+++..||||.||+++|.+.||.+++.+++++++.++|+++||||+|++++++.+.|...|+.++++ +|++.++.+...
T Consensus 141 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~ 219 (434)
T PRK14901 141 ERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPI-PGLPQGLRLTGN 219 (434)
T ss_pred HHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEEC-CCCCCeEEecCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999988 799999988643
Q ss_pred CCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 146 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 146 ~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
...+..+++|..|+|++||.+|++++.+|++++|++|||+|||||++|++|+.++++.|.|+|+|+++.|++.+++|+++
T Consensus 220 ~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 220 PGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred CCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 33578899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCceEEEEecCCCCCcccc--CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011002 226 MGVTNTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~l~~~~--~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lk 303 (496)
+|+.+|.++++|+..++... ..+.||+||+||||||+|+++++|+++|.+++.++..++.+|.++|.+|+++| |
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l----k 375 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLL----K 375 (434)
T ss_pred cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 99999999999998775321 13689999999999999999999999999999999999999999999999998 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEe
Q 011002 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++++++. + .+++||.|++||||+|+|+|
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~-------~----------------~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPP-------K----------------QKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCC-------C----------------CccCCCCCCCCcEEEEEEEe
Confidence 9999999999999999999999999987 5665431 0 12799999999999999998
Q ss_pred cC
Q 011002 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
.+
T Consensus 433 ~~ 434 (434)
T PRK14901 433 KS 434 (434)
T ss_pred CC
Confidence 64
No 6
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1e-61 Score=489.03 Aligned_cols=281 Identities=43% Similarity=0.665 Sum_probs=248.1
Q ss_pred HHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCccc-EEEecCCCCCCCCcccccceEEEecCcchhHHH
Q 011002 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVG-LVVYDSQVPIGATPEYMAGFYMLQSASSFLPVM 172 (496)
Q Consensus 94 ~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~g-l~~~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~ 172 (496)
+|++++.++|+++|||++|++++++.+.|...|+.++++ +|.+.+ +.+.....++..++.|..|+|++||.+|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPI-PRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEE-TSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEc-ccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 689999999999999999999999999999999999888 676666 344556678899999999999999999999999
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
+|.+++|+.||||||||||||++|+++|.+.|.|+|+|++..|+..+..|++++|+.++.++..|++.+........||+
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999899887633222246999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR- 331 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~- 331 (496)
||+||||||+|+++++|+++|.+++.++..++.+|++||.+|++++...++|||+|||||||++++|||+||++||+++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999985444499999999999999999999999999988
Q ss_pred CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEE
Q 011002 332 DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLK 381 (496)
Q Consensus 332 ~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~ 381 (496)
+++++++......+|+..+ +....++|+|||.|++||||+|+|+
T Consensus 240 ~~~l~~~~~~~~~~~~~~~------~~~~~~~r~~P~~~~~dGFFiA~lr 283 (283)
T PF01189_consen 240 DFELVPIPLPEPPPGFKSY------PIGEGCLRILPHRHGTDGFFIAKLR 283 (283)
T ss_dssp SEEEECCESSTCEEESSGG------CTGGGSEEESTTTSSSSSEEEEEEE
T ss_pred CcEEEeccccccccccccc------cCCCCEEEeCCCCCCCCCEEEEEeC
Confidence 8999988766555555332 3456789999999999999999996
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.4e-57 Score=483.22 Aligned_cols=297 Identities=31% Similarity=0.451 Sum_probs=261.0
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 011002 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~ 144 (496)
..+++.+||+|.||++.|...|+ +++.+++++++.++|+++|||++|++++++.+.|...|+.+.+. +|.+.++.+.
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~- 204 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPH-DLAPDAVRLE- 204 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeC-CCCCCeEEEC-
Confidence 34689999999999999999995 56789999999999999999999999999999999999998887 7888888764
Q ss_pred CCCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 011002 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~ 224 (496)
.+..+..+++|..|+|++||.+|++++.+|++++|++|||||||||++|++++.+++ .|.|+|+|+++.+++.+++|++
T Consensus 205 ~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 205 TPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 444578899999999999999999999999999999999999999999999999987 6899999999999999999999
Q ss_pred HcCCce-EEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011002 225 RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 225 r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lk 303 (496)
++|+.. +.+..+|+..++.....+.||+||+||||||+|+++++|+++|.+++.++..++.+|+++|.+|+++| |
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~L----k 359 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLL----K 359 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 999972 33466776554332233689999999999999999999999999999999999999999999999997 9
Q ss_pred CCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEe
Q 011002 304 SGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 304 pGG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
|||+|||||||++++|||+||.+||+++ ++.++..+.. +. ....++|++||.+++||||+|+|+|
T Consensus 360 pgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~---~~-----------~~~~~~~~~P~~~~~dGff~a~l~k 425 (426)
T TIGR00563 360 TGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTP---EQ-----------VRDGGLQILPHAEEGDGFFYAKLIK 425 (426)
T ss_pred CCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCc---cc-----------cCCCcEEECCCCCCCCCeEEEEEEe
Confidence 9999999999999999999999999987 5655432110 00 0124689999999999999999997
Q ss_pred c
Q 011002 383 M 383 (496)
Q Consensus 383 ~ 383 (496)
.
T Consensus 426 ~ 426 (426)
T TIGR00563 426 K 426 (426)
T ss_pred C
Confidence 4
No 8
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.6e-56 Score=474.01 Aligned_cols=304 Identities=32% Similarity=0.495 Sum_probs=274.7
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 011002 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~ 144 (496)
..+++.+||||.||+++|...||.+++.+|+++++.++|+++|||++|++++++...|...|+.+++. +|.+.++.+..
T Consensus 140 ~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~ 218 (444)
T PRK14902 140 VKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEES-LLSPEALVIEK 218 (444)
T ss_pred HHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEc-CCCCCeEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999888 89999988754
Q ss_pred CCCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 011002 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~ 224 (496)
..+..+++|..|.|++||.+|++++.++.+++|++|||+|||||++|++++.++++.+.|+|+|+++.+++.+++|++
T Consensus 219 --~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~ 296 (444)
T PRK14902 219 --GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK 296 (444)
T ss_pred --CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999998777899999999999999999999
Q ss_pred HcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011002 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkp 304 (496)
++|+.+|.++++|+..+...+. +.||+|++||||||+|+++++|+++|.+++.++..+..+|.++|..|+++| +|
T Consensus 297 ~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~L----kp 371 (444)
T PRK14902 297 RLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYL----KK 371 (444)
T ss_pred HcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHc----CC
Confidence 9999999999999987653332 689999999999999999999999999999999999999999999999998 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEec
Q 011002 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||.||.++++++ +++++++..+. ++.. ..+....++|++||.|++||||+|+|+|.
T Consensus 372 GG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~r~~P~~~~~dGfF~a~l~k~ 443 (444)
T PRK14902 372 GGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEK--PDEL------VYEVKDGYLQILPNDYGTDGFFIAKLRKK 443 (444)
T ss_pred CCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecccccc--cccc------cccccCCeEEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999987 58888764332 1110 00123467999999999999999999986
Q ss_pred C
Q 011002 384 S 384 (496)
Q Consensus 384 ~ 384 (496)
+
T Consensus 444 ~ 444 (444)
T PRK14902 444 G 444 (444)
T ss_pred C
Confidence 4
No 9
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=6.7e-56 Score=470.59 Aligned_cols=293 Identities=32% Similarity=0.490 Sum_probs=265.2
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 011002 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~ 144 (496)
..+++..||||.||+++|.+.|| +++.+|++++++++|+++|||++|++++++.+.|...|+.+++. +|.+.++.+.
T Consensus 134 ~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~- 210 (427)
T PRK10901 134 QADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPH-AVGPDAIRLE- 210 (427)
T ss_pred hhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCeEEEC-
Confidence 45789999999999999999996 67999999999999999999999999999999999999999988 7999998774
Q ss_pred CCCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 011002 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~ 224 (496)
...++..+++|..|++++||.+|++++.+|++++|++|||+|||||++|++++.++++ +.|+|+|+++.+++.+++|+.
T Consensus 211 ~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 211 TPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999999999999999865 899999999999999999999
Q ss_pred HcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011002 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkp 304 (496)
++|+. +.++++|+..++.....+.||.|++||||||+|+++++|+++|.++..++..+..+|.++|..|.++| +|
T Consensus 290 ~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L----kp 364 (427)
T PRK10901 290 RLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL----KP 364 (427)
T ss_pred HcCCC-eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99986 67889999876543334679999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEec
Q 011002 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383 (496)
Q Consensus 305 GG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~ 383 (496)
||+|||||||++++|||++|.++|+++ ++++++... . ...++|++||.|++||||+|+|+|.
T Consensus 365 GG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~----~-------------~~~~~~~~P~~~~~dGff~a~l~k~ 427 (427)
T PRK10901 365 GGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGT----P-------------QQPGRQLLPGEEDGDGFFYALLIKR 427 (427)
T ss_pred CCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCC----C-------------CCCceEECCCCCCCCCeEEEEEEEC
Confidence 999999999999999999999999886 687766321 0 0124789999999999999999874
No 10
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.5e-54 Score=462.45 Aligned_cols=301 Identities=26% Similarity=0.385 Sum_probs=262.6
Q ss_pred hHhHHHHhcChHHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEec
Q 011002 65 KLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYD 144 (496)
Q Consensus 65 ~~~l~~~y~~p~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~ 144 (496)
..+++.+||||.||+++|...||.+++.+++++++.++|+++|||+++++++++.+.|...|+.+.+. +|. ++.+..
T Consensus 142 ~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~ 218 (445)
T PRK14904 142 AERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKS-GLP--NFFLSK 218 (445)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEc-Ccc--eEEEec
Confidence 34588999999999999999999999999999999999999999999999999999999999987766 343 554432
Q ss_pred CCCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 011002 145 SQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224 (496)
Q Consensus 145 ~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~ 224 (496)
. .....+.|..|.|++||++|++++.+|.+++|++|||+|||||++|++++.++++.+.|+|+|+++.+++.+++|++
T Consensus 219 -~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 219 -D-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred -c-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 1 22333899999999999999999999999999999999999999999999998877899999999999999999999
Q ss_pred HcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011002 225 RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304 (496)
Q Consensus 225 r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkp 304 (496)
++|+.+|.++++|+..++. ...||+|++||||||+|+++++|+++|.+++.++..+..+|.++|.++.++| +|
T Consensus 297 ~~g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kp 369 (445)
T PRK14904 297 ALGITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLL----KP 369 (445)
T ss_pred HhCCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 9999999999999987652 2679999999999999999999999999999999999999999999999998 99
Q ss_pred CcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCCCCcccccccccCCCcCCeeEecCCCC-CCCceeEEEEEe
Q 011002 305 GGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH-NMDGFFVAKLKK 382 (496)
Q Consensus 305 GG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~-~~dGFFvA~l~K 382 (496)
||+|||||||++++|||+||++||+++ ++.+++..... ++ .|.. .+....++|++||.+ ++||||+|+|+|
T Consensus 370 gG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l--~~--~~~~---~~~~~~~~~~~P~~~~~~dGfF~a~l~k 442 (445)
T PRK14904 370 GGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSL--PE--PFHE---VAHPKGAILTLPGEHEGFDGGFAQRLRK 442 (445)
T ss_pred CcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecccccc--cc--cccc---ccCCCCcEEECCCCCCCCCcEEEEEEEe
Confidence 999999999999999999999999987 67766543211 11 1110 012234689999987 889999999998
Q ss_pred cC
Q 011002 383 MS 384 (496)
Q Consensus 383 ~~ 384 (496)
..
T Consensus 443 ~~ 444 (445)
T PRK14904 443 NA 444 (445)
T ss_pred cC
Confidence 74
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=2.3e-54 Score=431.75 Aligned_cols=263 Identities=51% Similarity=0.733 Sum_probs=227.0
Q ss_pred EEEcCCCCCHHHHHHHHHHcCCccCCCCcCCcccEEEecCCCCCCCCcccccceEEEecCcchhHHHhcCCCCCCeEeec
Q 011002 106 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDM 185 (496)
Q Consensus 106 iRvNtlk~~~~~l~~~L~~~G~~~~p~~~~~~~gl~~~~~~~~i~~~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDl 185 (496)
||||++|++++++.+.|.+.|+.+++.. .+.++.+......++.+++|..|+|++||.+|++++.+|++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC--EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC--CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999999999999999999876531 33344454344468999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcc
Q 011002 186 AAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVI 265 (496)
Q Consensus 186 cAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi 265 (496)
|||||++|++|++++++.|.|+|+|+++.+++.+++|++++|+.+|.+++.|+..++... +.||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~--~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV--PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc--cCCCEEEEcCCCCCCccc
Confidence 999999999999999888999999999999999999999999999999999998765433 569999999999999999
Q ss_pred cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC-CcEEeecCCcCCC
Q 011002 266 SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGR 344 (496)
Q Consensus 266 ~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~-~~~lv~~~~~~~~ 344 (496)
+++|+++|.++..++..++.+|+++|.+|+++| +|||+|||||||++++|||+||++||+++ ++.+++. .+.
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l----kpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~---~~~ 229 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFDAL----KPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP---KGD 229 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc---CCc
Confidence 999999999999999999999999999999998 99999999999999999999999999987 5655421 111
Q ss_pred CCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEe
Q 011002 345 QGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 345 ~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
+++..+.. ......|+|++||.|++||||+|+|+|
T Consensus 230 ~~~~~~~~---~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 230 EFFGANKG---KEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred cccccccc---ccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 11111110 012356899999999999999999986
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-40 Score=331.48 Aligned_cols=254 Identities=31% Similarity=0.469 Sum_probs=205.0
Q ss_pred HHHhCC-HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHH-----------HcC--CccCCCCcCCcccEEEe----
Q 011002 82 LVEMFP-PVELMELIESFEKPRPICLRTNTLKTRRRDLADVLI-----------NRG--VNLDPLSKWSKVGLVVY---- 143 (496)
Q Consensus 82 l~~~~~-~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~-----------~~G--~~~~p~~~~~~~gl~~~---- 143 (496)
.++.|. .+++..|++.+..++|.++|+.........+...++ .+| +......+|++.++...
T Consensus 32 ~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~~~ 111 (375)
T KOG2198|consen 32 ALDHFDKEDEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKDVK 111 (375)
T ss_pred HHhcCcchHHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhcCc
Confidence 455666 899999999999999999998766544444333222 234 32222237887765432
Q ss_pred ----cCCCCCCCCc-----ccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCC---CcEEEEEeC
Q 011002 144 ----DSQVPIGATP-----EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEM 211 (496)
Q Consensus 144 ----~~~~~i~~~~-----~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~---~g~V~AvDi 211 (496)
....++...+ ++..|.|+.|+++||+|+.+|+++||++|||||||||+||+.|.+.+.. .|.|+|||+
T Consensus 112 ~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 112 LDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred ccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 1112233333 3457999999999999999999999999999999999999988876643 369999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-------CCCCCCEEEECCCCCCCCcccCCchhhcc-CCHHHHHHH
Q 011002 212 KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNTVDRVLLDAPCSGTGVISKDESVKTS-KSLEDIQKC 283 (496)
Q Consensus 212 s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-------~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~-~s~~~i~~l 283 (496)
+..|+..+++.+.++...++.+.+.|+..++... ....||+||||+||||+|+++++|+++.. |....-..|
T Consensus 192 d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L 271 (375)
T KOG2198|consen 192 DPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGL 271 (375)
T ss_pred CHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCC
Confidence 9999999999999998888999999988776542 23579999999999999999999999776 777776789
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC--CcEEeecC
Q 011002 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR--DVKLVPCG 339 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~--~~~lv~~~ 339 (496)
..+|.+||.+++++| |+||+|||||||++|.|||+||+.+|+.. .+++++.+
T Consensus 272 ~~LQ~~iL~rgl~lL----k~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 272 HALQLRILRRGLRLL----KVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVS 325 (375)
T ss_pred hHHHHHHHHHHHHHh----cCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeec
Confidence 999999999999998 99999999999999999999999999886 47777764
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-34 Score=292.64 Aligned_cols=284 Identities=30% Similarity=0.416 Sum_probs=222.7
Q ss_pred CHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc----CCC----CcCCcccEEEecCCCCCCCCcccccc
Q 011002 87 PPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL----DPL----SKWSKVGLVVYDSQVPIGATPEYMAG 158 (496)
Q Consensus 87 ~~~e~~~~lea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~----~p~----~~~~~~gl~~~~~~~~i~~~~~~~~G 158 (496)
+...+.++.-....+.|.++|+||++..-.+....|...++.. -|. .+..+ .+.++..+..+...+.|..|
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~-~ll~~~~~n~i~~~~ly~~g 193 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVE-NLIIFPPSNFIVEHELYKNG 193 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccch-hhcccCCCcceeeccccccC
Confidence 4445555555444689999999999998888888887776651 111 00111 12233333456778999999
Q ss_pred eEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC
Q 011002 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
++++||.+|+++++.|+|.+|.+|+|+||+||.||+|+|..|.|.|.|+|+|.++.|.+.++..+...|+.++....+|+
T Consensus 194 ~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df 273 (413)
T KOG2360|consen 194 KFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDF 273 (413)
T ss_pred ceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCCccccCCCCCCEEEECCCCCCCCcccCCchhh--ccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--TSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 239 ~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~--~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
...+.......+..||+||+|||+|+..+.-.+. -......+..+...|-.++.+|+.+ ..--.|||||||++
T Consensus 274 ~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-----p~~k~vvystcs~~ 348 (413)
T KOG2360|consen 274 LNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-----PNLKRLVYSTCSLH 348 (413)
T ss_pred cCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-----Cchhheeeecchhh
Confidence 7743333336788999999999999987654444 2345678899999999999999984 34468999999999
Q ss_pred CcCCHHHHHHHHHhC--CcEEee--cCCcCCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEe
Q 011002 317 VTENEAVIDYALKKR--DVKLVP--CGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKK 382 (496)
Q Consensus 317 ~eENE~vV~~~L~~~--~~~lv~--~~~~~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K 382 (496)
.+|||+||...|... .+.+.+ +...|...|...| +-.+.|+|..|....++|||||.|.+
T Consensus 349 reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~------~~~e~~lr~~p~~~~~~gffva~fer 412 (413)
T KOG2360|consen 349 REENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTF------SGAEHCLRASPKSTLTIGFFVALFER 412 (413)
T ss_pred hhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccc------cccccceecccCCCCcceEEEEEeec
Confidence 999999999998764 234444 3333333444333 23467899999999999999999876
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.73 E-value=5.5e-17 Score=171.04 Aligned_cols=164 Identities=17% Similarity=0.208 Sum_probs=120.7
Q ss_pred CcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc--
Q 011002 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-- 229 (496)
...+++|+|..|.....++..+ .+|.+|||+|||+|+++++++. .+...|+++|+|+.+++.+++|+..+|+.
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 4577899999997766554443 3588999999999999876553 44569999999999999999999999985
Q ss_pred eEEEEecCCCCCcccc--CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 230 NTIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 230 nv~v~~~D~~~l~~~~--~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
++.++++|+.++...+ ..+.||+|++|||+.... ...+.........++..|+++| +|||.
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~-------------k~~l~~~~~~y~~l~~~a~~lL----k~gG~ 334 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN-------------KSQLMGACRGYKDINMLAIQLL----NPGGI 334 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCC-------------hHHHHHHHHHHHHHHHHHHHHc----CCCeE
Confidence 6899999997753222 135799999999975432 1233333344667888899987 99999
Q ss_pred EEEEeCCCCCcC--CHHHHHHHHHhC--CcEEee
Q 011002 308 IVYSTCSIMVTE--NEAVIDYALKKR--DVKLVP 337 (496)
Q Consensus 308 LVYSTCSl~~eE--NE~vV~~~L~~~--~~~lv~ 337 (496)
|+++|||-+..+ =.++|..+.... .++++.
T Consensus 335 lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 335 LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999955543 335555544443 455554
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.64 E-value=6.5e-16 Score=161.65 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=122.7
Q ss_pred CcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-
Q 011002 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n- 230 (496)
....++|+|..|..+...+...+. |.+|||+||-+|++|+++|. ++...|++||+|+..++.+++|+..+|+..
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 335689999999987766655543 99999999999999998775 344599999999999999999999999853
Q ss_pred -EEEEecCCCCCcccc--CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 231 -TIVCNYDGNELPKVL--GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 231 -v~v~~~D~~~l~~~~--~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
+.++++|+..+.... ....||+|++|||- +..+.............|+..++++| +|||+
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs-------------F~r~k~~~~~~~rdy~~l~~~~~~iL----~pgG~ 331 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPS-------------FARSKKQEFSAQRDYKDLNDLALRLL----APGGT 331 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcc-------------cccCcccchhHHHHHHHHHHHHHHHc----CCCCE
Confidence 789999998764332 23589999999993 33344444556667788999999997 99999
Q ss_pred EEEEeCCCCCcCCH--HHHHHHHHh
Q 011002 308 IVYSTCSIMVTENE--AVIDYALKK 330 (496)
Q Consensus 308 LVYSTCSl~~eENE--~vV~~~L~~ 330 (496)
|+.||||-+..... ..|...+..
T Consensus 332 l~~~s~~~~~~~~~f~~~i~~a~~~ 356 (393)
T COG1092 332 LVTSSCSRHFSSDLFLEIIARAAAA 356 (393)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHh
Confidence 99999998776654 344444433
No 16
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.59 E-value=3.4e-14 Score=133.87 Aligned_cols=138 Identities=27% Similarity=0.330 Sum_probs=114.6
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccC
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~ 246 (496)
..+....|.|.||++++|+|||+|+.|+.++ ++.+.++|||+|.++++++.+++|+.++|++|+.++.+|+-+.....
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~- 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL- 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-
Confidence 4566778899999999999999999999999 66778999999999999999999999999999999999997664333
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~ 326 (496)
..||+||+. |.|- ...+|..++..| +|||+||.-.-++ ||+...-.
T Consensus 101 -~~~daiFIG----Gg~~----------------------i~~ile~~~~~l----~~ggrlV~naitl---E~~~~a~~ 146 (187)
T COG2242 101 -PSPDAIFIG----GGGN----------------------IEEILEAAWERL----KPGGRLVANAITL---ETLAKALE 146 (187)
T ss_pred -CCCCEEEEC----CCCC----------------------HHHHHHHHHHHc----CcCCeEEEEeecH---HHHHHHHH
Confidence 379999982 2221 245688888887 9999999876554 89988888
Q ss_pred HHHhCCc-EEeecCC
Q 011002 327 ALKKRDV-KLVPCGL 340 (496)
Q Consensus 327 ~L~~~~~-~lv~~~~ 340 (496)
.+++.++ +++.+.+
T Consensus 147 ~~~~~g~~ei~~v~i 161 (187)
T COG2242 147 ALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHcCCceEEEEEe
Confidence 8988887 7766543
No 17
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=140.98 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=119.2
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcccc
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~ 245 (496)
++|++.+..+....+|||+|||.|..++.+|+...+ ..|++||+++.+.+.+++|++.+++. +|.+++.|...+.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 567777777777999999999999999999998765 89999999999999999999999986 4999999999987666
Q ss_pred CCCCCCEEEECCCCCCCCcc-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi-~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV 324 (496)
...+||.|+||||+.-.|.. ..+|.-...+.. ....-.+++..|..+| |+||++.+ +++.|.-.-+
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e-----~~~~le~~i~~a~~~l----k~~G~l~~----V~r~erl~ei 178 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHE-----ITLDLEDLIRAAAKLL----KPGGRLAF----VHRPERLAEI 178 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhh-----hcCCHHHHHHHHHHHc----cCCCEEEE----EecHHHHHHH
Confidence 55679999999999988876 233322211111 1112345788888887 99999988 5777776666
Q ss_pred HHHHHhCCc
Q 011002 325 DYALKKRDV 333 (496)
Q Consensus 325 ~~~L~~~~~ 333 (496)
-..+++.++
T Consensus 179 ~~~l~~~~~ 187 (248)
T COG4123 179 IELLKSYNL 187 (248)
T ss_pred HHHHHhcCC
Confidence 666776543
No 18
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.56 E-value=3.5e-14 Score=160.02 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=120.1
Q ss_pred CcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc--
Q 011002 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-- 229 (496)
+...++|.|..|.....++..+. .|.+|||+|||+|+++++++.. +...|+++|+|+.+++.+++|+..+|+.
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 44567899999977665554443 4789999999999999998874 3357999999999999999999999986
Q ss_pred eEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 011002 230 NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 230 nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LV 309 (496)
++.++++|+.++.... ...||+|++|||+.+.+-. ..++......+..++..++++| +|||.|+
T Consensus 590 ~v~~i~~D~~~~l~~~-~~~fDlIilDPP~f~~~~~-----------~~~~~~~~~~y~~l~~~a~~lL----~~gG~l~ 653 (702)
T PRK11783 590 QHRLIQADCLAWLKEA-REQFDLIFIDPPTFSNSKR-----------MEDSFDVQRDHVALIKDAKRLL----RPGGTLY 653 (702)
T ss_pred ceEEEEccHHHHHHHc-CCCcCEEEECCCCCCCCCc-----------cchhhhHHHHHHHHHHHHHHHc----CCCCEEE
Confidence 6999999987653222 3689999999998765310 0112223345677888888887 9999999
Q ss_pred EEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 011002 310 YSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 310 YSTCSl~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
+++|+-..... ..++...++.+..+
T Consensus 654 ~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 654 FSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred EEeCCccCChh----HHHHHhCCCeEEEE
Confidence 99999765543 34444545544433
No 19
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=8.1e-15 Score=127.32 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=91.3
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
|.+|||+|||+|..+++++... ...++++|+++..++.++.++..+++ .++.++++|...+...+..+.||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999999886 47999999999999999999999998 46999999998876445568999999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|+......... .......++..+.++| +|||.+++.+|.
T Consensus 79 P~~~~~~~~~~--------------~~~~~~~~~~~~~~~L----~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAA--------------LRRLYSRFLEAAARLL----KPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT------------------GGCHHHHHHHHHHHHE----EEEEEEEEEEEG
T ss_pred CCccccccchh--------------hHHHHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 99754211110 1114456788999987 999999999874
No 20
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.55 E-value=1.1e-13 Score=137.65 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=103.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc-cccCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-KVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~-~~~~~~~FD~VLlD 256 (496)
++.+|||+|||+|..++.++..++. ..|+|+|+|+.+++.+++|+..+|+ .++++|..... ... .+.||+|++|
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~N 160 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAAN 160 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEEC
Confidence 3468999999999999999987653 5899999999999999999998874 57788876532 111 2579999999
Q ss_pred CCCCCCCcccC-CchhhccCCHHHHH---HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCC
Q 011002 257 APCSGTGVISK-DESVKTSKSLEDIQ---KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 257 pPCSg~Gvi~r-~p~i~~~~s~~~i~---~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~ 332 (496)
|||..++.+.. .|++++......+. .....++.++..|.++| +|||.+++.+.. . +..-|..++.+++
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L----~~gG~l~l~~~~---~-~~~~v~~~l~~~g 232 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL----APGGHLLVETSE---R-QAPLAVEAFARAG 232 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc---c-hHHHHHHHHHHCC
Confidence 99998876543 45554433333221 23456788999999887 999999998653 2 2333444555544
No 21
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.53 E-value=1.9e-13 Score=128.55 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=111.1
Q ss_pred cchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc
Q 011002 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~ 245 (496)
.+.++...+...++.+|||+|||+|..+..++... ..|+++|+++.+++.+++|+..+++ ++.++.+|.....
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc---
Confidence 34566666766778899999999999999988753 2799999999999999999999887 5888889976543
Q ss_pred CCCCCCEEEECCCCCCCC-cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTG-VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~G-vi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV 324 (496)
.+.||.|++|||+.... ....++...+.+.. .......+..+|..+.++| +|||.+++++++.. +...+
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~L----k~gG~~~~~~~~~~---~~~~~ 149 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDG--GKDGRKVIDRFLDELPEIL----KEGGRVQLIQSSLN---GEPDT 149 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhc--CCchHHHHHHHHHhHHHhh----CCCCEEEEEEeccC---ChHHH
Confidence 25899999999985332 22222211111110 0011234567888888887 99999999987764 46666
Q ss_pred HHHHHhCCcEEee
Q 011002 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..+|++.++.+..
T Consensus 150 ~~~l~~~gf~~~~ 162 (179)
T TIGR00537 150 FDKLDERGFRYEI 162 (179)
T ss_pred HHHHHhCCCeEEE
Confidence 7777777766544
No 22
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=3.7e-13 Score=134.39 Aligned_cols=234 Identities=15% Similarity=0.115 Sum_probs=139.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHcCCCCCeEEEEcCCCC-CHHH---HHHHHHH--cCCccCCCCcCCc-ccEEEecCCCC
Q 011002 76 EFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKT-RRRD---LADVLIN--RGVNLDPLSKWSK-VGLVVYDSQVP 148 (496)
Q Consensus 76 ~wl~~~l~~~~~~~e~~~~lea~~~~~p~~iRvNtlk~-~~~~---l~~~L~~--~G~~~~p~~~~~~-~gl~~~~~~~~ 148 (496)
.|+...|.. +..++..++.......+.++++|..+. +.++ +.+.+.. .|.++..+..+.. .+..+..+
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~--- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS--- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC---
Confidence 344455544 666778888887777777888776554 3332 2222222 3433221100000 11111111
Q ss_pred CCCCcccccceEEEecCcchhHHH---hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 149 IGATPEYMAGFYMLQSASSFLPVM---ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~l~v~---~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
.|.++.....-.++-. .+...++.+|||+|||+|..+..++..++ ...|+++|+++.+++.+++|+..
T Consensus 84 --------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~ 154 (275)
T PRK09328 84 --------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKH 154 (275)
T ss_pred --------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence 1112111111112211 23455788999999999999999999875 47999999999999999999984
Q ss_pred cCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCccc-CCchhhccCCHHHH---HHHHHHHHHHHHHHHHhhhhc
Q 011002 226 MGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTSKSLEDI---QKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 226 ~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~-r~p~i~~~~s~~~i---~~l~~lQ~~LL~~A~~~L~~~ 301 (496)
....++.++.+|..... ..+.||+|++||||...+.+. ..++++.......+ ......+..++..+.++|
T Consensus 155 ~~~~~i~~~~~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L--- 228 (275)
T PRK09328 155 GLGARVEFLQGDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL--- 228 (275)
T ss_pred CCCCcEEEEEccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc---
Confidence 44457999999985432 136899999999998876543 23333311111111 112345677888888887
Q ss_pred CCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 011002 302 SKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 302 lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~ 334 (496)
+|||++++.+ .. ...+.+..++.+.++.
T Consensus 229 -k~gG~l~~e~-g~---~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 229 -KPGGWLLLEI-GY---DQGEAVRALLAAAGFA 256 (275)
T ss_pred -ccCCEEEEEE-Cc---hHHHHHHHHHHhCCCc
Confidence 9999998854 22 1223455566655543
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.53 E-value=4e-13 Score=136.03 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=101.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
+.++.+|||+|||+|..++.++...++ ..|+|+|+|+.+++.+++|+..+|+. ++.++++|+.... ....||+|+
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---PGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---CCCCccEEE
Confidence 345679999999999999999987653 69999999999999999999999985 5999999985432 225799999
Q ss_pred ECCCCCCCCcccCCc-hhhccCCHHHH----HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 255 LDAPCSGTGVISKDE-SVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p-~i~~~~s~~~i----~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
+||||...+.+..-+ ++. ..+... ......++.++..+.++| +|||+|++-+.. ..+.|...+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~--~ep~~al~gg~dGl~~~~~il~~a~~~L----~~gG~l~~e~g~-----~~~~v~~~~~ 263 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYH--HEPELALASGEDGLDLVRRILAEAADHL----NENGVLVVEVGN-----SMEALEEAYP 263 (284)
T ss_pred ECCCCCCccchhhCCHhhh--cCHHHHhcCCCcHHHHHHHHHHHHHHhc----CCCCEEEEEECc-----CHHHHHHHHH
Confidence 999998776543222 221 111111 012245677899998887 999999875542 2234555554
Q ss_pred hC
Q 011002 330 KR 331 (496)
Q Consensus 330 ~~ 331 (496)
..
T Consensus 264 ~~ 265 (284)
T TIGR03533 264 DV 265 (284)
T ss_pred hC
Confidence 43
No 24
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=5.5e-14 Score=131.63 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=97.0
Q ss_pred cCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc
Q 011002 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~ 243 (496)
|.++.+.+..+...++.+|||+|||+|..+++++...+. ..|+++|+++.+++.++.|+..+++.++.+...|......
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 456767777776667889999999999999999987653 5799999999999999999999999889999999866432
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
...||+|++|||....+ . .......+++..|.++| +|||.|++..-
T Consensus 96 ---~~~fD~Iv~NPP~~~~~--------------~---~~~~~~~~~i~~a~~~L----k~~G~l~lv~~ 141 (170)
T PF05175_consen 96 ---DGKFDLIVSNPPFHAGG--------------D---DGLDLLRDFIEQARRYL----KPGGRLFLVIN 141 (170)
T ss_dssp ---TTCEEEEEE---SBTTS--------------H---CHHHHHHHHHHHHHHHE----EEEEEEEEEEE
T ss_pred ---ccceeEEEEccchhccc--------------c---cchhhHHHHHHHHHHhc----cCCCEEEEEee
Confidence 37899999999943222 0 12234577899999987 99999866443
No 25
>PRK14967 putative methyltransferase; Provisional
Probab=99.52 E-value=3.8e-13 Score=131.11 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=109.0
Q ss_pred ceEEEecCcchhHHHhc---CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 011002 158 GFYMLQSASSFLPVMAL---APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L---~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|.|..|..+ .+.+..+ .+.++.+|||+|||+|..+..++.. +.+.|+++|+++.+++.++.|+..+|+ ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 455555543 3333333 4678899999999999999988875 235899999999999999999999887 57888
Q ss_pred ecCCCCCccccCCCCCCEEEECCCCCC---CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 235 NYDGNELPKVLGLNTVDRVLLDAPCSG---TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 235 ~~D~~~l~~~~~~~~FD~VLlDpPCSg---~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
++|..... ..+.||+|++|||+.. .+...+.|...|...... ...+..++..+.++| ++||+|++.
T Consensus 90 ~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~L----k~gG~l~~~ 158 (223)
T PRK14967 90 RGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALL----APGGSLLLV 158 (223)
T ss_pred ECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhc----CCCcEEEEE
Confidence 88876532 2368999999998643 333444454444332222 133466788888887 999999986
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcE
Q 011002 312 TCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 312 TCSl~~eENE~vV~~~L~~~~~~ 334 (496)
+.++. +-..+-..++..++.
T Consensus 159 ~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 159 QSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred Eeccc---CHHHHHHHHHHCCCC
Confidence 55543 222333445555543
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=2.4e-13 Score=140.29 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=97.6
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
++.+++|.+|||.|||+|+.++.++. + ...|+|+|+++.++..++.|+..+|+.++.+..+|+..++.. .+.||.
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~-~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--~~~~D~ 251 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGL-M--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--SESVDA 251 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHH-h--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--cCCCCE
Confidence 34678899999999999999877554 3 368999999999999999999999998888999999987643 378999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
|++||||........ .....++.++|..+.+.| +|||+++|.+++-
T Consensus 252 Iv~dPPyg~~~~~~~-------------~~~~~l~~~~l~~~~r~L----k~gG~lv~~~~~~ 297 (329)
T TIGR01177 252 IATDPPYGRSTTAAG-------------DGLESLYERSLEEFHEVL----KSEGWIVYAVPTR 297 (329)
T ss_pred EEECCCCcCcccccC-------------CchHHHHHHHHHHHHHHc----cCCcEEEEEEcCC
Confidence 999999864322111 013345677899988887 9999999998875
No 27
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.50 E-value=1.1e-12 Score=125.72 Aligned_cols=139 Identities=20% Similarity=0.318 Sum_probs=105.7
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCcccc
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~ 245 (496)
..++...+.+.++.+|||+|||+|..++.++..++..+.|+|+|+++.+++.+++|+..+|+ .++.++.+|+.++....
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 34445567888999999999999999999998887668999999999999999999999995 67999999987643222
Q ss_pred CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~ 325 (496)
.+.||+|+++.. .. ....++..+.++| +|||+||+.+|++ ++...+.
T Consensus 109 -~~~~D~V~~~~~---~~----------------------~~~~~l~~~~~~L----kpgG~lv~~~~~~---~~~~~~~ 155 (198)
T PRK00377 109 -NEKFDRIFIGGG---SE----------------------KLKEIISASWEII----KKGGRIVIDAILL---ETVNNAL 155 (198)
T ss_pred -CCCCCEEEECCC---cc----------------------cHHHHHHHHHHHc----CCCcEEEEEeecH---HHHHHHH
Confidence 257999998531 00 1134677778876 9999999988865 4555666
Q ss_pred HHHHhCCc--EEeec
Q 011002 326 YALKKRDV--KLVPC 338 (496)
Q Consensus 326 ~~L~~~~~--~lv~~ 338 (496)
..|++.++ +++.+
T Consensus 156 ~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 156 SALENIGFNLEITEV 170 (198)
T ss_pred HHHHHcCCCeEEEEE
Confidence 66766653 44444
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.49 E-value=2.3e-13 Score=117.09 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=84.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCC-CCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDG-NELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~-~~l~~~~~~~~FD~VLl 255 (496)
||.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.+++++...+. .++.+++.|+ .... . ...||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~-~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--F-LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--T-SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--c-CCCCCEEEE
Confidence 688999999999999999999654 47899999999999999999977666 5799999999 2222 1 267999998
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+. .+...++ .. ..+.++|..+.+.| +|||+|++++|
T Consensus 77 ~~-~~~~~~~----------------~~-~~~~~~l~~~~~~L----~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL----------------PL-DERRRVLERIRRLL----KPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC----------------HH-HHHHHHHHHHHHHE----EEEEEEEEEE-
T ss_pred CC-Ccccccc----------------ch-hHHHHHHHHHHHhc----CCCcEEEEEEC
Confidence 54 1111010 11 34566788888887 99999999998
No 29
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=3.8e-13 Score=130.43 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=78.1
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
....++.+++|++|||+|||+|..+..|+.+.+..|.|+++|+++.+++.+++|++++|+.|+.++.+|+...... ..
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~ 145 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LA 145 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cC
Confidence 4456678899999999999999999999999876789999999999999999999999999999999999765332 26
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.||+|++++++
T Consensus 146 ~fD~Ii~~~~~ 156 (215)
T TIGR00080 146 PYDRIYVTAAG 156 (215)
T ss_pred CCCEEEEcCCc
Confidence 89999999874
No 30
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.48 E-value=4.3e-13 Score=137.59 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=73.4
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
++...++.+|||+|||+|..++.+|.. ...|+|+|+++.+++.+++|+..+|+.|+.++++|+..+.... .+.||+
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~~~~D~ 243 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-GEVPDL 243 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-CCCCeE
Confidence 344446789999999999999999984 2689999999999999999999999988999999997764321 247999
Q ss_pred EEECCCCCCCC
Q 011002 253 VLLDAPCSGTG 263 (496)
Q Consensus 253 VLlDpPCSg~G 263 (496)
|++|||+.|.+
T Consensus 244 Vv~dPPr~G~~ 254 (315)
T PRK03522 244 VLVNPPRRGIG 254 (315)
T ss_pred EEECCCCCCcc
Confidence 99999988764
No 31
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.48 E-value=2.8e-14 Score=144.00 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=103.0
Q ss_pred CcccccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc--
Q 011002 152 TPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-- 229 (496)
Q Consensus 152 ~~~~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-- 229 (496)
+...++|+|..|.....++.... .|.+|||++|-+||+|++++. ++...|++||.|...++.+++|+..+|++
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 44567899999999887766543 488999999999999997654 34458999999999999999999999975
Q ss_pred eEEEEecCCCCCccc-cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 011002 230 NTIVCNYDGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 230 nv~v~~~D~~~l~~~-~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~L 308 (496)
.+.++..|+..+... ...++||+|++|||...-|. + ++ .....+|+..++++| +|||.|
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~----------~---~~---~~~y~~L~~~a~~ll----~~gG~l 234 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK----------F---DL---ERDYKKLLRRAMKLL----KPGGLL 234 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST----------C---EH---HHHHHHHHHHHHHTE----EEEEEE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH----------H---HH---HHHHHHHHHHHHHhc----CCCCEE
Confidence 589999998764221 12368999999999653221 1 11 234567899999997 999999
Q ss_pred EEEeCCCCCcCC
Q 011002 309 VYSTCSIMVTEN 320 (496)
Q Consensus 309 VYSTCSl~~eEN 320 (496)
+.||||-+...+
T Consensus 235 ~~~scs~~i~~~ 246 (286)
T PF10672_consen 235 LTCSCSHHISPD 246 (286)
T ss_dssp EEEE--TTS-HH
T ss_pred EEEcCCcccCHH
Confidence 999999877654
No 32
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=3.6e-13 Score=132.51 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=95.6
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
..+..+.+.+|.+|||+|||+|-.++.++...+ .|.|+++|+|+.||+.+++.+...|..++.++.+|+..+| ++++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCC
Confidence 344555666999999999999999999999988 7999999999999999999999999988999999999998 5679
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+||+|.+ +.|+ ..+.+ ..+.|.++.+.| ||||+++...-|
T Consensus 119 sFD~vt~-----~fgl----------------rnv~d-~~~aL~E~~RVl----KpgG~~~vle~~ 158 (238)
T COG2226 119 SFDAVTI-----SFGL----------------RNVTD-IDKALKEMYRVL----KPGGRLLVLEFS 158 (238)
T ss_pred ccCEEEe-----eehh----------------hcCCC-HHHHHHHHHHhh----cCCeEEEEEEcC
Confidence 9999987 2222 11111 234688888887 999988765544
No 33
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.45 E-value=1.4e-12 Score=139.89 Aligned_cols=88 Identities=26% Similarity=0.282 Sum_probs=74.2
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc--cCCCC
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--LGLNT 249 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~--~~~~~ 249 (496)
.++.+.+|.+|||+|||+|..++.+|... ..|+|+|+|+.+++.+++|+..+|+.|+.++++|+...... +....
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence 34566789999999999999999998864 58999999999999999999999999999999998654211 22357
Q ss_pred CCEEEECCCCCCC
Q 011002 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 FD~VLlDpPCSg~ 262 (496)
||+|++|||++|.
T Consensus 368 fD~Vi~dPPr~g~ 380 (443)
T PRK13168 368 FDKVLLDPPRAGA 380 (443)
T ss_pred CCEEEECcCCcCh
Confidence 9999999998764
No 34
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=3.7e-12 Score=124.98 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=82.8
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc--cccCCCCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~--~~~~~~~FD 251 (496)
+.+.+|.+|||+|||+|+++.+++..++ .|.|+|+|+++.+++.+.+++... .||.++.+|+.... ..+ .+.||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhc-cccCC
Confidence 6778999999999999999999999986 689999999999999988887654 67888899987521 111 25699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
+|++|.+ +|+ ....+|..+.++| ||||+|+.+
T Consensus 144 ~i~~d~~---------~p~---------------~~~~~L~~~~r~L----KpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---------QPN---------------QAEIAIDNAEFFL----KDGGYLLLA 175 (226)
T ss_pred EEEECCC---------Chh---------------HHHHHHHHHHHhc----CCCcEEEEE
Confidence 9998754 111 0123467777776 999999984
No 35
>PTZ00146 fibrillarin; Provisional
Probab=99.45 E-value=3.7e-12 Score=128.60 Aligned_cols=141 Identities=23% Similarity=0.281 Sum_probs=95.5
Q ss_pred cchhHHHh------cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 166 SSFLPVMA------LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 166 sS~l~v~~------L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
-|-|++.+ +.+++|++|||+|||||.+|+++|.++...|.|+|+|+++.+++.+...+... .||.++..|++
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~ 191 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR 191 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence 35666555 34789999999999999999999999988899999999988776666655432 67888899987
Q ss_pred CCc-cccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCcEEEEE---eCC
Q 011002 240 ELP-KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS---TCS 314 (496)
Q Consensus 240 ~l~-~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~-LL~~A~~~L~~~lkpGG~LVYS---TCS 314 (496)
... ..+....||+||+|.. .|+ |.+ ++.+|.++| ||||+|+.+ .|.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~L----KpGG~~vI~ika~~i 242 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFL----KNGGHFIISIKANCI 242 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhc----cCCCEEEEEEecccc
Confidence 421 0111257999999974 111 222 345666676 999999884 333
Q ss_pred CCCcCCHHHHH---HHHHhCCcEEee
Q 011002 315 IMVTENEAVID---YALKKRDVKLVP 337 (496)
Q Consensus 315 l~~eENE~vV~---~~L~~~~~~lv~ 337 (496)
-....-++++. ..|+..+|+.+.
T Consensus 243 d~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 243 DSTAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCceEE
Confidence 33233344422 345555555443
No 36
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.44 E-value=1.9e-13 Score=134.67 Aligned_cols=138 Identities=21% Similarity=0.261 Sum_probs=88.4
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
.++..+.+.+|.+|||+|||+|..|..++..+++.+.|+++|+|+.+|+.+++++...+..+|.++++|+..+|. +++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~--~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF--PDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC--CCC
Confidence 445667788999999999999999999998888779999999999999999999999999899999999999884 458
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L 328 (496)
+||.|++ +.|+- + +. .+.+.|.++.++| ||||+++....+. .+|. .+..+.
T Consensus 116 sfD~v~~-----~fglr-------------n---~~-d~~~~l~E~~RVL----kPGG~l~ile~~~--p~~~-~~~~~~ 166 (233)
T PF01209_consen 116 SFDAVTC-----SFGLR-------------N---FP-DRERALREMYRVL----KPGGRLVILEFSK--PRNP-LLRALY 166 (233)
T ss_dssp -EEEEEE-----ES-GG-------------G----S-SHHHHHHHHHHHE----EEEEEEEEEEEEB---SSH-HHHHHH
T ss_pred ceeEEEH-----HhhHH-------------h---hC-CHHHHHHHHHHHc----CCCeEEEEeeccC--CCCc-hhhcee
Confidence 9999986 33321 1 11 1234688888887 9999999877554 3454 444444
Q ss_pred HhCCcEEee
Q 011002 329 KKRDVKLVP 337 (496)
Q Consensus 329 ~~~~~~lv~ 337 (496)
.-+-..++|
T Consensus 167 ~~y~~~ilP 175 (233)
T PF01209_consen 167 KFYFKYILP 175 (233)
T ss_dssp HH-------
T ss_pred eeeeccccc
Confidence 333223444
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=1.7e-12 Score=127.42 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=103.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
.+.+|||+|||+|..+..++...+. ..|+++|+++.+++.++.++..+|+.++.++++|+... +..+.||+|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---CcCCceeEEEECC
Confidence 4568999999999999999988654 68999999999999999999999998899999998653 2237899999999
Q ss_pred CCCCCCcccC--------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 258 PCSGTGVISK--------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 258 PCSg~Gvi~r--------~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
||...+.+.. .|...+...... ......++..+.++| +|||.+++.. +. ...+.+..++.
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~i~~~~~~L----~~gG~~~~~~-~~---~~~~~~~~~l~ 230 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDG----LDFYRRIIAQAPRLL----KPGGWLLLEI-GY---DQGEAVRALFE 230 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcH----HHHHHHHHHHHHHhc----ccCCEEEEEE-Cc---cHHHHHHHHHH
Confidence 9987764422 111111111111 122356788888876 9999998863 32 22344555566
Q ss_pred hCCcEEee
Q 011002 330 KRDVKLVP 337 (496)
Q Consensus 330 ~~~~~lv~ 337 (496)
+.+++.+.
T Consensus 231 ~~gf~~v~ 238 (251)
T TIGR03534 231 AAGFADVE 238 (251)
T ss_pred hCCCCceE
Confidence 66655443
No 38
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.42 E-value=1.8e-12 Score=138.43 Aligned_cols=88 Identities=24% Similarity=0.205 Sum_probs=73.8
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC-ccc-cCCCC
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKV-LGLNT 249 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l-~~~-~~~~~ 249 (496)
.++.+.++++|||+|||+|..++.+|... ..|+|+|+++.+++.+++|+..+|+.|+.++.+|+..+ +.. .....
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 34566788999999999999999999863 57999999999999999999999999999999998653 211 12357
Q ss_pred CCEEEECCCCCCC
Q 011002 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 FD~VLlDpPCSg~ 262 (496)
||+|++|||+.|.
T Consensus 363 ~D~vi~dPPr~G~ 375 (431)
T TIGR00479 363 PDVLLLDPPRKGC 375 (431)
T ss_pred CCEEEECcCCCCC
Confidence 9999999998764
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.39 E-value=4.7e-12 Score=119.94 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=101.7
Q ss_pred cCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc
Q 011002 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~ 243 (496)
+....++...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.+++|+.++++.++.++++|+...
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-- 93 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-- 93 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh--
Confidence 33334455667778899999999999999999998764 479999999999999999999999988899998887421
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHH
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~v 323 (496)
+ .+.||+|+++.. .+ .+ ..++..+.+.| +|||+|+++... .++...
T Consensus 94 -~-~~~~D~v~~~~~---~~---------------~~-------~~~l~~~~~~L----k~gG~lv~~~~~---~~~~~~ 139 (187)
T PRK08287 94 -L-PGKADAIFIGGS---GG---------------NL-------TAIIDWSLAHL----HPGGRLVLTFIL---LENLHS 139 (187)
T ss_pred -c-CcCCCEEEECCC---cc---------------CH-------HHHHHHHHHhc----CCCeEEEEEEec---HhhHHH
Confidence 2 257999998532 00 01 23567777776 999999986543 466666
Q ss_pred HHHHHHhCCcEE
Q 011002 324 IDYALKKRDVKL 335 (496)
Q Consensus 324 V~~~L~~~~~~l 335 (496)
+..++++.+++.
T Consensus 140 ~~~~l~~~g~~~ 151 (187)
T PRK08287 140 ALAHLEKCGVSE 151 (187)
T ss_pred HHHHHHHCCCCc
Confidence 677787776543
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=4.7e-12 Score=129.66 Aligned_cols=121 Identities=14% Similarity=0.182 Sum_probs=93.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
+.+|||+|||+|..++.++...+ ...|+|+|+|+.+++.+++|+..+|+. ++.++++|+.... +...||+|++||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---PGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---CCCCccEEEECC
Confidence 36899999999999999998764 378999999999999999999999985 4999999975432 225799999999
Q ss_pred CCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 258 PCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~Gvi~r-------~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
||.+.+.+.. .|...+.-... .....+.++..+.++| +|||+|++-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~d----Gl~~~~~i~~~a~~~L----~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDD----GLDLVRRILAEAPDYL----TEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCc----hHHHHHHHHHHHHHhc----CCCCEEEEE
Confidence 9988765432 22222211111 1245677889998887 999999874
No 41
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=1.2e-11 Score=125.18 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
+.+|||+|||+|..++.++...++ ..|+|+|+|+.+++.+++|+.++++.+ +.++.+|.... +....||+|++||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNP 190 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNP 190 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECC
Confidence 369999999999999999988653 689999999999999999999999975 99999997653 2224799999999
Q ss_pred CCCCCCcccCCchhhccCCHHHHH---HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQ---KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~---~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|+.....+...+++........+. ......+.++..+.++| +|||+|++-++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L----~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL----KPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc----cCCCEEEEEECc
Confidence 997765332222222111111110 11235677888888887 999999987654
No 42
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=4.3e-12 Score=123.11 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=80.5
Q ss_pred ceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 011002 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|..+.+.........++++++|++|||+|||+|..|..++.+++..+.|+++|+++.+++.++++++.+|+.|+.++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 33444433334455667889999999999999999999999987778999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCEEEECC
Q 011002 238 GNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDp 257 (496)
+..... ....||+|+++.
T Consensus 136 ~~~~~~--~~~~fD~I~~~~ 153 (212)
T PRK13942 136 GTLGYE--ENAPYDRIYVTA 153 (212)
T ss_pred cccCCC--cCCCcCEEEECC
Confidence 876432 236899999864
No 43
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=1.2e-11 Score=115.98 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=107.0
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCCccc
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKV 244 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n--v~v~~~D~~~l~~~ 244 (496)
+.+.+..+...++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++..+++.+ +.++..|.....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 455555666678899999999999999999886 3689999999999999999999998876 888888876532
Q ss_pred cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHH
Q 011002 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 245 ~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV 324 (496)
....||+|++|||+...+-.....+ .+......-.........++..+.++| +|||.+++..+++.. + +-+
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~L----k~gG~~~~~~~~~~~--~-~~l 157 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYL----KPGGRILLLQSSLTG--E-DEV 157 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhc----CCCeEEEEEEcccCC--H-HHH
Confidence 2247999999999865432111000 000000000001223456788888887 999999988877642 2 334
Q ss_pred HHHHHhCCcEEee
Q 011002 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..++.+.+++++.
T Consensus 158 ~~~~~~~g~~~~~ 170 (188)
T PRK14968 158 LEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHCCCeeee
Confidence 4566666666543
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.38 E-value=1.2e-11 Score=107.60 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=88.9
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
...+.+.++.+|||+|||+|..+..++..+++ +.|+++|+++.+++.++.++..+++.++.++.+|+....... ...|
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 89 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-LPEP 89 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-cCCC
Confidence 34456677899999999999999999998765 799999999999999999999999988999888876532211 2589
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
|.|+++.+ . ....+++..+.+.| +|||+|+.+.
T Consensus 90 D~v~~~~~----------------~---------~~~~~~l~~~~~~L----k~gG~li~~~ 122 (124)
T TIGR02469 90 DRVFIGGS----------------G---------GLLQEILEAIWRRL----RPGGRIVLNA 122 (124)
T ss_pred CEEEECCc----------------c---------hhHHHHHHHHHHHc----CCCCEEEEEe
Confidence 99998542 0 01236788888887 9999998764
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.37 E-value=4.7e-12 Score=115.82 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
+.+.+|||+|||+|..+..++....+.+.|+++|+|+.+++.++.+++++++.|+.+.++|..+++..+. +.||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 4688999999999999999996655568999999999999999999999999999999999998653322 689999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.++... .....+|..+.++| ++||.++.+.+.
T Consensus 81 ~~l~~~----------------------~~~~~~l~~~~~~l----k~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF----------------------PDPEKVLKNIIRLL----KPGGILIISDPN 112 (152)
T ss_dssp STGGGT----------------------SHHHHHHHHHHHHE----EEEEEEEEEEEE
T ss_pred Cchhhc----------------------cCHHHHHHHHHHHc----CCCcEEEEEECC
Confidence 764111 12235678888887 999999998888
No 46
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.37 E-value=4.2e-12 Score=132.31 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-----
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~----- 244 (496)
+..++++.++ .|||++||.|.+|+.||... ..|+|+|+++.+++.++.|+..+|++|+.++.+++.++...
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 3455666665 89999999999999998764 58999999999999999999999999999998876543211
Q ss_pred ---------cCCCCCCEEEECCCCCCCC
Q 011002 245 ---------LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 ---------~~~~~FD~VLlDpPCSg~G 263 (496)
.....+|.|++|||-+|.+
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1113689999999999876
No 47
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=4.4e-12 Score=121.08 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=107.8
Q ss_pred ceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 011002 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.-+.|.....+....+.+.++.+|||+|||+|..+..++...+ .+.|+|+|+++.+++.+++|++++|+.++.++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 44456777777778888888999999999999999999987654 47999999999999999999999999889999999
Q ss_pred CCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
+....... ...+|.|++|.. . . ...++..+.+.| +|||+|++.++++
T Consensus 99 ~~~~~~~~-~~~~d~v~~~~~----~---------------~-------~~~~l~~~~~~L----kpgG~li~~~~~~-- 145 (196)
T PRK07402 99 APECLAQL-APAPDRVCIEGG----R---------------P-------IKEILQAVWQYL----KPGGRLVATASSL-- 145 (196)
T ss_pred hHHHHhhC-CCCCCEEEEECC----c---------------C-------HHHHHHHHHHhc----CCCeEEEEEeecH--
Confidence 85421111 135788887531 0 0 134577777776 9999999998864
Q ss_pred cCCHHHHHHHHHh---CCcEEeecC
Q 011002 318 TENEAVIDYALKK---RDVKLVPCG 339 (496)
Q Consensus 318 eENE~vV~~~L~~---~~~~lv~~~ 339 (496)
+.-..+...++. ++++++.+.
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 146 -EGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred -HHHHHHHHHHHhcCCCCceEEEEE
Confidence 222333344543 356665553
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=9.2e-12 Score=120.09 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=74.9
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~ 248 (496)
...++.+.++++|||+|||+|..+..++.+++..+.|+++|+++.+++.+++|+.++|+.+ +.++++|+...... ..
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~ 141 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HA 141 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CC
Confidence 3456778899999999999999999999998766899999999999999999999999864 89999999764322 26
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.||+|+++.+
T Consensus 142 ~fD~Ii~~~~ 151 (205)
T PRK13944 142 PFDAIIVTAA 151 (205)
T ss_pred CccEEEEccC
Confidence 8999999765
No 49
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.36 E-value=1.2e-11 Score=130.44 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=100.9
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+.++.+|||+|||+|..++.++...+ ...|+|+|+|+.+++.+++|+.+++. ++.++++|....... ..+.||+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~-~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMP-SEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccc-cCCCccEEEE
Confidence 34677999999999999999887654 47899999999999999999999986 789999998653211 1257999999
Q ss_pred CCCCCCCCcccC-------CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 011002 256 DAPCSGTGVISK-------DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 256 DpPCSg~Gvi~r-------~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L 328 (496)
|||+...+-... .|...+.-.. .-....+.++..+.+.| +|||.+++.. . ....+-|..++
T Consensus 326 NPPYI~~~e~~l~~~~v~~EP~~AL~gG~----dGL~~yr~Ii~~a~~~L----kpgG~lilEi---G-~~Q~e~V~~ll 393 (423)
T PRK14966 326 NPPYIENGDKHLLQGDLRFEPQIALTDFS----DGLSCIRTLAQGAPDRL----AEGGFLLLEH---G-FDQGAAVRGVL 393 (423)
T ss_pred CCCCCCcchhhhcchhhhcCHHHHhhCCC----chHHHHHHHHHHHHHhc----CCCcEEEEEE---C-ccHHHHHHHHH
Confidence 999977653322 2222221111 11233567777777776 9999987632 2 23445555666
Q ss_pred HhCCcEEe
Q 011002 329 KKRDVKLV 336 (496)
Q Consensus 329 ~~~~~~lv 336 (496)
.+.++..+
T Consensus 394 ~~~Gf~~v 401 (423)
T PRK14966 394 AENGFSGV 401 (423)
T ss_pred HHCCCcEE
Confidence 66555433
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.34 E-value=5.5e-12 Score=121.41 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=94.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCCccccCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~-~~l~~~~~~~~FD~VLlD 256 (496)
++.+|||+|||+|..+..++..+++ +.|+|+|+|+.+++.+++++...++.++.++++|+ ..++..+..+.||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6789999999999999999988754 68999999999999999999999998899999998 555433344789999997
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
.|.. |.....+.. ...+..+|..+.++| +|||+|+++|+ ++..+.++++
T Consensus 119 ~~~p------------~~~~~~~~~--~~~~~~~l~~i~~~L----kpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 119 FPDP------------WPKKRHHKR--RLVQPEFLALYARKL----KPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred CCCC------------CCCcccccc--ccCCHHHHHHHHHHc----CCCCEEEEEcC------CHHHHHHHHH
Confidence 5421 000000000 012455788888886 99999999874 5555555544
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=2.2e-11 Score=115.51 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
+|.+|||+|||+|..+..++... +.+.|+|+|+++.+++.++++++++|+.++.++++|+.++.. .+.||+|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---EEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---cCCccEEEehh
Confidence 48899999999999999988654 347899999999999999999999999889999999987632 36899999853
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh---CCcE
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK---RDVK 334 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~---~~~~ 334 (496)
.+ + ...++..+.++| +|||+++.. .....+..+..+.++ .+++
T Consensus 118 ----~~---------------~-------~~~~~~~~~~~L----kpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 118 ----LA---------------S-------LNVLLELTLNLL----KVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ----hh---------------C-------HHHHHHHHHHhc----CCCCEEEEE----cCCCcHHHHHHHHHhhhhcCce
Confidence 00 0 123455556665 999999875 455667777777666 3677
Q ss_pred Eeec
Q 011002 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
.++.
T Consensus 164 ~~~~ 167 (181)
T TIGR00138 164 PLEV 167 (181)
T ss_pred Eeec
Confidence 6665
No 52
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.6e-11 Score=113.39 Aligned_cols=123 Identities=18% Similarity=0.243 Sum_probs=100.4
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEE
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
.+.-.|..|+|+|||+|..++..+.+ +...|+|+|++++.++.+++|+.+ +..+|.++..|...+. ..||.|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----~~~dtv 112 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----GKFDTV 112 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----CccceE
Confidence 35667889999999999999866654 346999999999999999999999 4457999999999875 679999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~ 333 (496)
+.||| .|+..+++|. .+|..|++. +.+||| ++..-+.+.+..+...++.
T Consensus 113 imNPP---FG~~~rhaDr-----------------~Fl~~Ale~--------s~vVYs---iH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 113 IMNPP---FGSQRRHADR-----------------PFLLKALEI--------SDVVYS---IHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred EECCC---CccccccCCH-----------------HHHHHHHHh--------hheEEE---eeccccHHHHHHHHHhcCC
Confidence 99999 6776776653 457888886 478895 7888899998888887764
Q ss_pred EE
Q 011002 334 KL 335 (496)
Q Consensus 334 ~l 335 (496)
.+
T Consensus 162 ~v 163 (198)
T COG2263 162 TV 163 (198)
T ss_pred eE
Confidence 43
No 53
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.32 E-value=2.7e-11 Score=118.00 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=92.2
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
....+.+.+|.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++...++.++.++.+|+..++. ..+.
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 114 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--DDNS 114 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--CCCC
Confidence 44566778899999999999999999999877668999999999999999999999999889999999987652 3478
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
||.|+++-.. ...+ ...++|..+.++| +|||+|+..+-
T Consensus 115 fD~V~~~~~l------~~~~----------------~~~~~l~~~~~~L----k~gG~l~~~~~ 152 (231)
T TIGR02752 115 FDYVTIGFGL------RNVP----------------DYMQVLREMYRVV----KPGGKVVCLET 152 (231)
T ss_pred ccEEEEeccc------ccCC----------------CHHHHHHHHHHHc----CcCeEEEEEEC
Confidence 9999975321 1001 0124677788876 99999987653
No 54
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=6.6e-12 Score=121.75 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=74.4
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
....+|.++||++|||+|||+|..|..||.+.+..|.|+++|+++..++.+++|+..+|+.||.++.+|+....... .
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~--a 140 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE--A 140 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG---
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC--C
Confidence 34567889999999999999999999999999888999999999999999999999999999999999987643322 6
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.||+|++.+.|
T Consensus 141 pfD~I~v~~a~ 151 (209)
T PF01135_consen 141 PFDRIIVTAAV 151 (209)
T ss_dssp SEEEEEESSBB
T ss_pred CcCEEEEeecc
Confidence 89999997654
No 55
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.6e-11 Score=121.59 Aligned_cols=158 Identities=15% Similarity=0.208 Sum_probs=102.4
Q ss_pred ceEEEecCcchhHHHhc-CCCCCC-eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEe
Q 011002 158 GFYMLQSASSFLPVMAL-APQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L-~~~~g~-~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~ 235 (496)
+.|+-...+..|+-.++ ...... +|||+|||+|..++.++...++ ..|+|+|+|+.+++.++.|+.++|+.++.++.
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 44544444444443322 222222 7999999999999999988754 79999999999999999999999987766666
Q ss_pred cCCCCCccccCCCCCCEEEECCCCCCCCcc-------cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 011002 236 YDGNELPKVLGLNTVDRVLLDAPCSGTGVI-------SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 236 ~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi-------~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~L 308 (496)
.|.... .. ++||+|++||||-..-.. ..+|.....-..+ .....++++..+...+ +|||.+
T Consensus 167 ~dlf~~--~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d----Gl~~~~~i~~~a~~~l----~~~g~l 234 (280)
T COG2890 167 SDLFEP--LR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD----GLEVYRRILGEAPDIL----KPGGVL 234 (280)
T ss_pred eecccc--cC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc----HHHHHHHHHHhhHHHc----CCCcEE
Confidence 665432 22 589999999999554311 2233222211111 2245677888888887 998877
Q ss_pred EEEeCCCCCcCCHHHHHHHHHhCC
Q 011002 309 VYSTCSIMVTENEAVIDYALKKRD 332 (496)
Q Consensus 309 VYSTCSl~~eENE~vV~~~L~~~~ 332 (496)
++ -+++. . .+.|..++.+.+
T Consensus 235 ~l-e~g~~--q-~~~v~~~~~~~~ 254 (280)
T COG2890 235 IL-EIGLT--Q-GEAVKALFEDTG 254 (280)
T ss_pred EE-EECCC--c-HHHHHHHHHhcC
Confidence 65 34442 3 444444444444
No 56
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1e-11 Score=132.29 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=92.5
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-CCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLN 248 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-~~~ 248 (496)
+..+++..++++|||+.||.|++|++||.. ...|+|+|+++..++.+++|++.+|+.|+.+..+|+..+.... ...
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 445567788999999999999999999954 4689999999999999999999999999999999998875433 235
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.||.||+|||-+|.+ ..++....++ +| -.|||++|--
T Consensus 362 ~~d~VvvDPPR~G~~------------------------~~~lk~l~~~-----~p-~~IvYVSCNP 398 (432)
T COG2265 362 KPDVVVVDPPRAGAD------------------------REVLKQLAKL-----KP-KRIVYVSCNP 398 (432)
T ss_pred CCCEEEECCCCCCCC------------------------HHHHHHHHhc-----CC-CcEEEEeCCH
Confidence 899999999998876 2345555554 55 4699999964
No 57
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=1.5e-11 Score=120.28 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=112.7
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-----GLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~-----g~V~AvDis~~rl~~l~~nl~r~g~~---nv~v~~~D~~~ 240 (496)
+.+..|+|..|.+|||||+|+|-.|..|.....+. +.|+.+|+|+++|+..+++..+.++. .+.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34567889999999999999999999999988764 79999999999999999999888773 38899999999
Q ss_pred CccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 011002 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 241 l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eEN 320 (496)
+| +++..||+..+ +.|+ ..+.+.|+ .|..|++.| ||||++. |-.++.+|
T Consensus 171 Lp--Fdd~s~D~yTi-----afGI----------------RN~th~~k-~l~EAYRVL----KpGGrf~---cLeFskv~ 219 (296)
T KOG1540|consen 171 LP--FDDDSFDAYTI-----AFGI----------------RNVTHIQK-ALREAYRVL----KPGGRFS---CLEFSKVE 219 (296)
T ss_pred CC--CCCCcceeEEE-----ecce----------------ecCCCHHH-HHHHHHHhc----CCCcEEE---EEEccccc
Confidence 98 56689999865 3443 22333343 579999987 9999886 77788888
Q ss_pred HHHHHHHHHhCCcEEeec
Q 011002 321 EAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 321 E~vV~~~L~~~~~~lv~~ 338 (496)
.+.+.+|...+-+.++|.
T Consensus 220 ~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 220 NEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred cHHHHHHHHhhhhhhhch
Confidence 888888888776666654
No 58
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=2e-11 Score=122.20 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH---cCCceEEEEecCCCCCccccC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR---MGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r---~g~~nv~v~~~D~~~l~~~~~ 246 (496)
....+.+.++.+|||+|||+|..+..++..++..+.|+|+|+|+.+++.++++... .+..++.++++|+..+|. +
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--~ 142 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--D 142 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--C
Confidence 34456778899999999999999999998876668999999999999999877642 234679999999988873 4
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.++||.|++. .+ +.. +. ....+|.++.+.| ||||+|+.++.+-
T Consensus 143 ~~sfD~V~~~-----~~-l~~---------------~~-d~~~~l~ei~rvL----kpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMG-----YG-LRN---------------VV-DRLKAMQEMYRVL----KPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEe-----cc-ccc---------------CC-CHHHHHHHHHHHc----CcCcEEEEEECCC
Confidence 4789999862 11 100 00 1234688888887 9999999987663
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.30 E-value=2.5e-11 Score=115.83 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=93.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
++.+|||+|||+|..++.++...+ .+.|+++|+++.+++.++++++.++++++.+.++|+..++. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEEEcc
Confidence 489999999999999999998654 47999999999999999999999999889999999988654 36899999852
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~l 335 (496)
.+ . -..++..+.++| +|||+|++..+.. ....+..+....++.+
T Consensus 121 ----~~------------~----------~~~~l~~~~~~L----kpGG~lv~~~~~~----~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 121 ----VA------------S----------LSDLVELCLPLL----KPGGRFLALKGRD----PEEEIAELPKALGGKV 164 (187)
T ss_pred ----cc------------C----------HHHHHHHHHHhc----CCCeEEEEEeCCC----hHHHHHHHHHhcCceE
Confidence 00 0 123577777776 9999999886553 3344444444445544
No 60
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.8e-11 Score=116.75 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=105.1
Q ss_pred cccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEE
Q 011002 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIV 233 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v 233 (496)
|..+--++--..+.+.++.+++.||.+|||.|+|+|..|.+||...++.|.|+.+|+..+.++.+++|+...|+.| |.+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 4455555556667788899999999999999999999999999999989999999999999999999999999987 888
Q ss_pred EecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEe
Q 011002 234 CNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YST 312 (496)
Q Consensus 234 ~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LV-YST 312 (496)
..+|..+.... ..||+|++|-| +| -+.|.++.++| +|||.++ |+.
T Consensus 151 ~~~Dv~~~~~~---~~vDav~LDmp---------~P------------------W~~le~~~~~L----kpgg~~~~y~P 196 (256)
T COG2519 151 KLGDVREGIDE---EDVDAVFLDLP---------DP------------------WNVLEHVSDAL----KPGGVVVVYSP 196 (256)
T ss_pred Eeccccccccc---cccCEEEEcCC---------Ch------------------HHHHHHHHHHh----CCCcEEEEEcC
Confidence 89998876432 48999999988 11 23588888887 9999765 555
Q ss_pred CC
Q 011002 313 CS 314 (496)
Q Consensus 313 CS 314 (496)
|.
T Consensus 197 ~v 198 (256)
T COG2519 197 TV 198 (256)
T ss_pred CH
Confidence 44
No 61
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.8e-10 Score=116.20 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=100.6
Q ss_pred cCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc
Q 011002 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~ 243 (496)
|..|.+...-|....+.+|||+|||-|..++.++...+ ...|+.+|+|...++.++.|++.+++++..++..|...-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 56788888888877777999999999999999999876 5799999999999999999999999998655666654322
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
. ++||.|++|||-. .|. ......-.+|+..|.+.| ++||.|....-...+
T Consensus 222 -~--~kfd~IisNPPfh-~G~----------------~v~~~~~~~~i~~A~~~L----~~gGeL~iVan~~l~ 271 (300)
T COG2813 222 -E--GKFDLIISNPPFH-AGK----------------AVVHSLAQEIIAAAARHL----KPGGELWIVANRHLP 271 (300)
T ss_pred -c--ccccEEEeCCCcc-CCc----------------chhHHHHHHHHHHHHHhh----ccCCEEEEEEcCCCC
Confidence 2 4899999999943 221 111223356899999997 999999877654433
No 62
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.6e-11 Score=115.65 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=82.2
Q ss_pred cceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 011002 157 AGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.|.++.|----.....+|.+++|++||++|||+|..|..||++. +.|+++|+.+...+.+++|++.+|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 57777765333455678899999999999999999999999996 489999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCEEEECCC
Q 011002 237 DGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 237 D~~~l~~~~~~~~FD~VLlDpP 258 (496)
|+..--.. ...||+|++.+-
T Consensus 128 DG~~G~~~--~aPyD~I~Vtaa 147 (209)
T COG2518 128 DGSKGWPE--EAPYDRIIVTAA 147 (209)
T ss_pred CcccCCCC--CCCcCEEEEeec
Confidence 99764222 278999999653
No 63
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.28 E-value=4.9e-11 Score=115.16 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=76.8
Q ss_pred ceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 011002 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
|.++.+.........++.++++.+|||+|||+|..+..++.+. +.|+++|+++.+++.++++++++|+.++.+..+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3344443322344556788899999999999999999888774 4799999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCEEEECCCC
Q 011002 238 GNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDpPC 259 (496)
+..... ..+.||+|+++++|
T Consensus 135 ~~~~~~--~~~~fD~I~~~~~~ 154 (212)
T PRK00312 135 GWKGWP--AYAPFDRILVTAAA 154 (212)
T ss_pred cccCCC--cCCCcCEEEEccCc
Confidence 865322 12689999998764
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=3.4e-11 Score=125.03 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=97.0
Q ss_pred cCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc
Q 011002 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK 243 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~ 243 (496)
|.+|.+....+......+|||+|||+|..+..++...+ ...|+++|+|+.+++.++.|+..+++. ..++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~- 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI- 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-
Confidence 34455555656555566899999999999999998764 368999999999999999999999885 456667765422
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eE 319 (496)
.+.||.|++|||.- .|.. .+ ...-.+++..+.+.| +|||.|++...+..+.+
T Consensus 259 ---~~~fDlIvsNPPFH-~g~~---------~~-------~~~~~~~i~~a~~~L----kpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 259 ---KGRFDMIISNPPFH-DGIQ---------TS-------LDAAQTLIRGAVRHL----NSGGELRIVANAFLPYP 310 (342)
T ss_pred ---CCCccEEEECCCcc-CCcc---------cc-------HHHHHHHHHHHHHhc----CcCCEEEEEEeCCCChH
Confidence 26899999999942 1110 00 112255788888887 99999999999987755
No 65
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=125.28 Aligned_cols=124 Identities=9% Similarity=0.002 Sum_probs=94.2
Q ss_pred cCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc---eEEEEecCCCC
Q 011002 164 SASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT---NTIVCNYDGNE 240 (496)
Q Consensus 164 d~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~---nv~v~~~D~~~ 240 (496)
|.++.+....+....+.+|||+|||+|..++.++...+ ...|+++|+|+.+++.+++|++.++.. ++.+...|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 45566666666655567999999999999999998864 479999999999999999999988753 67888888754
Q ss_pred CccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 241 l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.. ...+||.|++|||+.....+ +. ..-.+++..+.+.| +|||.|++..
T Consensus 293 ~~---~~~~fDlIlsNPPfh~~~~~----------~~-------~ia~~l~~~a~~~L----kpGG~L~iV~ 340 (378)
T PRK15001 293 GV---EPFRFNAVLCNPPFHQQHAL----------TD-------NVAWEMFHHARRCL----KINGELYIVA 340 (378)
T ss_pred cC---CCCCEEEEEECcCcccCccC----------CH-------HHHHHHHHHHHHhc----ccCCEEEEEE
Confidence 22 22579999999997432111 11 11235788888887 9999998875
No 66
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.26 E-value=5.7e-11 Score=118.96 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=91.7
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
...+.+|++|||+|||+|..+..++..++..+.|+++|+++.+++.+++++..+|+.++.+..+|+..++. ..+.||+
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--ADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--CCCceeE
Confidence 34567899999999999998888888887778999999999999999999999999899999999887663 3468999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
|+++.- +...|+ ...++..++++| +|||+|++++-..
T Consensus 150 Vi~~~v------~~~~~d----------------~~~~l~~~~r~L----kpGG~l~i~~~~~ 186 (272)
T PRK11873 150 IISNCV------INLSPD----------------KERVFKEAFRVL----KPGGRFAISDVVL 186 (272)
T ss_pred EEEcCc------ccCCCC----------------HHHHHHHHHHHc----CCCcEEEEEEeec
Confidence 998631 111111 134688888887 9999999976543
No 67
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.26 E-value=6.9e-11 Score=112.15 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=80.6
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc------ccCCC
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~------~~~~~ 248 (496)
.+++|++|||+|||||+.+.+++..+...+.|+|+|+++.+ +..++.++++|..+... ....+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 45789999999999999999999988666799999999864 23467788888765421 12346
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
+||+|++|+++...|.. +...... ...+..+|..+.++| +|||+++...
T Consensus 98 ~~D~V~~~~~~~~~g~~----------~~~~~~~-~~~~~~~l~~~~~~L----kpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYW----------DIDHLRS-IDLVELALDIAKEVL----KPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCc----------cccHHHH-HHHHHHHHHHHHHHc----cCCCEEEEEE
Confidence 79999999754434431 1111111 134567888888887 9999998863
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=4e-11 Score=125.95 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
...++.+|||+|||+|..++.+|.. ...|+|+|+++.+++.+++|++.+|++|+.++++|+..+.... ...||+|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 3346789999999999999998853 3589999999999999999999999999999999987653211 14699999
Q ss_pred ECCCCCCC
Q 011002 255 LDAPCSGT 262 (496)
Q Consensus 255 lDpPCSg~ 262 (496)
+|||..|.
T Consensus 306 ~DPPr~G~ 313 (374)
T TIGR02085 306 VNPPRRGI 313 (374)
T ss_pred ECCCCCCC
Confidence 99997654
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.25 E-value=1.1e-10 Score=127.08 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=100.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
++.+|||+|||+|..++.++..+++ ..|+|+|+|+.+++.++.|+..+|+. ++.++++|.... ...+.||+|++|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEEC
Confidence 4578999999999999999887654 79999999999999999999999985 588999997542 123579999999
Q ss_pred CCCCCCCcc--------cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 011002 257 APCSGTGVI--------SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 257 pPCSg~Gvi--------~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L 328 (496)
||+...... ...|...+.-..+. ....+.|+..+.++| +|||.|++. +.. . ..+.|..++
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dG----l~~~~~il~~a~~~L----~~gG~l~lE-ig~--~-q~~~v~~~~ 281 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDG----LQAYFIIAENAKQFL----KPNGKIILE-IGF--K-QEEAVTQIF 281 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccH----HHHHHHHHHHHHHhc----cCCCEEEEE-ECC--c-hHHHHHHHH
Confidence 999876432 11233222222222 234567788888876 999999874 332 2 334455555
Q ss_pred HhCCcE
Q 011002 329 KKRDVK 334 (496)
Q Consensus 329 ~~~~~~ 334 (496)
.+.++.
T Consensus 282 ~~~g~~ 287 (506)
T PRK01544 282 LDHGYN 287 (506)
T ss_pred HhcCCC
Confidence 555544
No 70
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=8.7e-11 Score=116.53 Aligned_cols=92 Identities=27% Similarity=0.381 Sum_probs=74.1
Q ss_pred cchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCC--Cc
Q 011002 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNE--LP 242 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~--l~ 242 (496)
...++++.|++.||.+||+.|+|+|+.|.+|+..+++.|.|+..|+++++++.+++|++.+|+. ||.+.+.|... ++
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 3446678899999999999999999999999999999999999999999999999999999996 69999999853 22
Q ss_pred cccCCCCCCEEEECCC
Q 011002 243 KVLGLNTVDRVLLDAP 258 (496)
Q Consensus 243 ~~~~~~~FD~VLlDpP 258 (496)
... ...||.|++|-|
T Consensus 108 ~~~-~~~~DavfLDlp 122 (247)
T PF08704_consen 108 EEL-ESDFDAVFLDLP 122 (247)
T ss_dssp TT--TTSEEEEEEESS
T ss_pred ccc-cCcccEEEEeCC
Confidence 111 267999999998
No 71
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=7.4e-11 Score=116.32 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=93.1
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcccc--
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL-- 245 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~-- 245 (496)
+...++...++.+|||+|||+|.-++.|+..++..|.|+++|+++.+++.+++|++++|+.+ |.++.+|+.+....+
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~ 138 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN 138 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence 44445555668899999999999999999988878999999999999999999999999964 999999997652211
Q ss_pred --CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 246 --GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 --~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
..+.||.|++|++= .....++..++++| +|||.|+...+-+
T Consensus 139 ~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll----~~GG~ii~dn~l~ 181 (234)
T PLN02781 139 NDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLV----KVGGIIAFDNTLW 181 (234)
T ss_pred CCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhc----CCCeEEEEEcCCc
Confidence 12589999999850 11234577777776 9999999766544
No 72
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.22 E-value=9.7e-11 Score=120.10 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=97.0
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCCccccCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELPKVLGLN 248 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~-D~~~l~~~~~~~ 248 (496)
.+.+..+++|+.|||=.||+||+.+.+. +|+ ..++|+|++..|+.-++.|+..+|+....+... |++.+| ++..
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G--~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l~~~ 263 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAG-LMG--ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--LRDN 263 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhh-hcC--ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--CCCC
Confidence 3455568999999999999999977544 553 689999999999999999999999988766666 999988 4445
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
.||.|++|||+--+-.+.. ..+..+..++|..+.+.| ++||++||.+-
T Consensus 264 ~vdaIatDPPYGrst~~~~-------------~~l~~Ly~~~le~~~evL----k~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKG-------------EGLDELYEEALESASEVL----KPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCccccccc-------------ccHHHHHHHHHHHHHHHh----hcCcEEEEecC
Confidence 7999999999743321111 115567788888888887 99999999765
No 73
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=122.49 Aligned_cols=122 Identities=18% Similarity=0.343 Sum_probs=98.3
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
.+.+..+..|||+|||+|..++++|...+ ...++|+|+++.++..+.+++...|+.|+.++++|+..+...++.+.||.
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeE
Confidence 34455678999999999999999999975 47999999999999999999999999999999999987644455689999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
|++.-|+- |..... .++ .+..+|..+.++| +|||.+.+.|.+.
T Consensus 196 I~lnFPdP------------W~KkrH--RRl--v~~~fL~e~~RvL----kpGG~l~l~TD~~ 238 (390)
T PRK14121 196 IFVHFPVP------------WDKKPH--RRV--ISEDFLNEALRVL----KPGGTLELRTDSE 238 (390)
T ss_pred EEEeCCCC------------ccccch--hhc--cHHHHHHHHHHHc----CCCcEEEEEEECH
Confidence 99987642 211111 112 2567788888887 9999999999875
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.7e-10 Score=116.84 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=104.0
Q ss_pred CcchhHHHhcC--CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCC
Q 011002 165 ASSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL 241 (496)
Q Consensus 165 ~sS~l~v~~L~--~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l 241 (496)
+...+...+|. .++|.+|||+|||+|-.++.++.+ +...|+|+|+++..++.++.|+.++|+.. +.....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 45566667765 568999999999999999877665 34689999999999999999999999975 33333333333
Q ss_pred ccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 011002 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE 321 (496)
+ ..+.||+|++|- ++..-..|...+..+| +|||+++.|- |.. +-+
T Consensus 225 ~---~~~~~DvIVANI-------------------------LA~vl~~La~~~~~~l----kpgg~lIlSG--Il~-~q~ 269 (300)
T COG2264 225 P---ENGPFDVIVANI-------------------------LAEVLVELAPDIKRLL----KPGGRLILSG--ILE-DQA 269 (300)
T ss_pred c---ccCcccEEEehh-------------------------hHHHHHHHHHHHHHHc----CCCceEEEEe--ehH-hHH
Confidence 2 236899999842 4555556677777776 9999999987 554 447
Q ss_pred HHHHHHHHhCCcEEeec
Q 011002 322 AVIDYALKKRDVKLVPC 338 (496)
Q Consensus 322 ~vV~~~L~~~~~~lv~~ 338 (496)
+.|..++...+++++++
T Consensus 270 ~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 270 ESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHHHHHHHhCCCeEeEE
Confidence 77888887888888876
No 75
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=112.36 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.++.+|||+|||+|..++.++... ...|+++|+++..++.+++|++.+|+.++.++++|+..+.... ...||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-GTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-CCCceEEEEC
Confidence 568899999999999998654432 3689999999999999999999999989999999986542211 2469999999
Q ss_pred CCC
Q 011002 257 APC 259 (496)
Q Consensus 257 pPC 259 (496)
||+
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 995
No 76
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=1.5e-10 Score=119.29 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=73.7
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
...++++++++|||+|||+|..+..++..++..|.|+++|+++.+++.+++++..+|+.++.++.+|+....... ..|
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--~~f 150 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--APY 150 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc--CCc
Confidence 345668899999999999999999999988766789999999999999999999999999999999987654322 579
Q ss_pred CEEEECC
Q 011002 251 DRVLLDA 257 (496)
Q Consensus 251 D~VLlDp 257 (496)
|+|+++.
T Consensus 151 D~Ii~~~ 157 (322)
T PRK13943 151 DVIFVTV 157 (322)
T ss_pred cEEEECC
Confidence 9999964
No 77
>PLN02244 tocopherol O-methyltransferase
Probab=99.20 E-value=1.4e-10 Score=120.27 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.++.+|||+|||+|+.+.+++... .+.|+|+|+++.+++.+++++...|+. ++.+..+|+..++. ..+.||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--EDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--CCCCccEEEE
Confidence 678999999999999999999876 368999999999999999999998885 59999999988763 3478999987
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.- .+..-+ ....++..+.++| +|||+|+.+++.
T Consensus 193 ~~------~~~h~~----------------d~~~~l~e~~rvL----kpGG~lvi~~~~ 225 (340)
T PLN02244 193 ME------SGEHMP----------------DKRKFVQELARVA----APGGRIIIVTWC 225 (340)
T ss_pred CC------chhccC----------------CHHHHHHHHHHHc----CCCcEEEEEEec
Confidence 21 110000 1234677778876 999999998864
No 78
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.20 E-value=1.7e-10 Score=111.81 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=78.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc------cccCCCC
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~------~~~~~~~ 249 (496)
..+|.+|||+|||||+.+..+++.++..+.|+|+|+++. .++.++.++++|+.... ..+..+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 367899999999999999999999877789999999981 23457889999998753 1133478
Q ss_pred CCEEEECC-CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 250 VDRVLLDA-PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 250 FD~VLlDp-PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
||+|++|+ |.. +|. |. .+......+...+|..+.++| +|||+|+..+
T Consensus 118 ~D~V~S~~~~~~-~g~----~~-------~d~~~~~~~~~~~L~~~~~~L----kpGG~~vi~~ 165 (209)
T PRK11188 118 VQVVMSDMAPNM-SGT----PA-------VDIPRAMYLVELALDMCRDVL----APGGSFVVKV 165 (209)
T ss_pred CCEEecCCCCcc-CCC----hH-------HHHHHHHHHHHHHHHHHHHHc----CCCCEEEEEE
Confidence 99999986 321 221 11 111111222346778888876 9999998864
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=6.7e-11 Score=113.07 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=88.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-cCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-LGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-~~~~~FD~VLlD 256 (496)
.+.+|||+|||+|..+..+|...+ .+.|+|+|+++.+++.+..++.+.|+.|+.++++|+..++.. ++.+.||.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 467999999999999999998865 478999999999999999999999999999999999765422 233589999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.|. |..+....... -.+..++..+.++| +|||.|+++|
T Consensus 95 ~pd---------pw~k~~h~~~r-----~~~~~~l~~~~r~L----kpgG~l~~~t 132 (194)
T TIGR00091 95 FPD---------PWPKKRHNKRR-----ITQPHFLKEYANVL----KKGGVIHFKT 132 (194)
T ss_pred CCC---------cCCCCCccccc-----cCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 762 11110000000 11345678888886 9999998876
No 80
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.18 E-value=6.6e-11 Score=113.98 Aligned_cols=101 Identities=30% Similarity=0.374 Sum_probs=75.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
.++|+.||||+||-|.+++.+|... ....|+|+|++|..++.+++|++.+++.+ |.++++|++.+.. ...||+|+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---~~~~drvi 174 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---EGKFDRVI 174 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------TT-EEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---ccccCEEE
Confidence 5789999999999999999999854 34689999999999999999999999987 8899999998865 37899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
++.|-+.. .+|..|+.++ ++||.+-|
T Consensus 175 m~lp~~~~--------------------------~fl~~~~~~~----~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPESSL--------------------------EFLDAALSLL----KEGGIIHY 200 (200)
T ss_dssp E--TSSGG--------------------------GGHHHHHHHE----EEEEEEEE
T ss_pred ECChHHHH--------------------------HHHHHHHHHh----cCCcEEEC
Confidence 99884322 2477788887 99999877
No 81
>PLN02476 O-methyltransferase
Probab=99.17 E-value=1.3e-10 Score=117.12 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=98.0
Q ss_pred cchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccc
Q 011002 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKV 244 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~ 244 (496)
...+...++......+|||+|++.|..|+++|..++..|.|+++|.++.+++.+++|+++.|+. +|.++.+|+.+....
T Consensus 106 ~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 3445556666667889999999999999999999988899999999999999999999999997 599999998764221
Q ss_pred c----CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 245 L----GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 245 ~----~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
+ ..+.||.||+|++= ......+..++++| +|||.||.-..-++.
T Consensus 186 l~~~~~~~~FD~VFIDa~K-------------------------~~Y~~y~e~~l~lL----~~GGvIV~DNvL~~G 233 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK-------------------------RMYQDYFELLLQLV----RVGGVIVMDNVLWHG 233 (278)
T ss_pred HHhcccCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhc----CCCcEEEEecCccCC
Confidence 1 12589999999970 12345677777876 999999987665443
No 82
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.17 E-value=4.2e-10 Score=106.61 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=85.6
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN 239 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--------~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~ 239 (496)
..+.+..+++|+.|||-+||+|+..+..+.+..+.. .++|+|+++.+++.++.|+...|+.. |.+.+.|+.
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~ 98 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR 98 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh
Confidence 334556788999999999999999988777665533 38999999999999999999999975 889999999
Q ss_pred CCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 240 ~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.++ +..+.||.|++|||+ |. ....-..+..+...++..+.+.+ ++ ++|+.|++
T Consensus 99 ~l~--~~~~~~d~IvtnPPy---G~-----------r~~~~~~~~~ly~~~~~~~~~~l----~~--~~v~l~~~ 151 (179)
T PF01170_consen 99 ELP--LPDGSVDAIVTNPPY---GR-----------RLGSKKDLEKLYRQFLRELKRVL----KP--RAVFLTTS 151 (179)
T ss_dssp GGG--GTTSBSCEEEEE--S---TT-----------SHCHHHHHHHHHHHHHHHHHCHS----TT--CEEEEEES
T ss_pred hcc--cccCCCCEEEECcch---hh-----------hccCHHHHHHHHHHHHHHHHHHC----CC--CEEEEEEC
Confidence 988 233789999999995 21 11222334566777888888776 76 45554444
No 83
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.17 E-value=1e-10 Score=122.33 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.6
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccC------------
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG------------ 246 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~------------ 246 (496)
+.+|||+|||+|.+|+.++... ..|+|+|+++.+++.+++|+..+|++|+.++++|+..+...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888764 4899999999999999999999999999999999876422110
Q ss_pred --CCCCCEEEECCCCCCC
Q 011002 247 --LNTVDRVLLDAPCSGT 262 (496)
Q Consensus 247 --~~~FD~VLlDpPCSg~ 262 (496)
...||+|++|||.+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 1259999999998654
No 84
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.17 E-value=1.8e-10 Score=121.34 Aligned_cols=112 Identities=26% Similarity=0.332 Sum_probs=86.5
Q ss_pred hHHHhcCCC-CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC
Q 011002 169 LPVMALAPQ-EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~-~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~ 247 (496)
+++.++... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|+.++.+.+.|+..+... .
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~ 123 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E 123 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c
Confidence 334444333 457999999999999999988764 358999999999999999999999999888999998765321 2
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
..||+|++||| |++ ..+|..|+..+ ++||.|.+| |+
T Consensus 124 ~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~----~~~gilyvS-At 159 (382)
T PRK04338 124 RKFDVVDIDPF--GSP------------------------APFLDSAIRSV----KRGGLLCVT-AT 159 (382)
T ss_pred CCCCEEEECCC--CCc------------------------HHHHHHHHHHh----cCCCEEEEE-ec
Confidence 57999999998 443 13577777876 887766554 54
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.16 E-value=5e-10 Score=113.63 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=92.4
Q ss_pred cchhHHHhcC--CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCc
Q 011002 166 SSFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELP 242 (496)
Q Consensus 166 sS~l~v~~L~--~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~ 242 (496)
.+.+...+|. ..+|.+|||+|||+|..+..++.+ + .+.|+|+|+++.+++.+++|+..+++.+ +.+...|.....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~ 222 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPI 222 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccccc
Confidence 3344444443 457899999999999999877754 3 3689999999999999999999999865 566665532221
Q ss_pred cccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHH
Q 011002 243 KVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEA 322 (496)
Q Consensus 243 ~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~ 322 (496)
.+.||+|++|..+ .....++..+.++| +|||+|+.|... . +...
T Consensus 223 ----~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~L----kpgG~li~sgi~--~-~~~~ 266 (288)
T TIGR00406 223 ----EGKADVIVANILA-------------------------EVIKELYPQFSRLV----KPGGWLILSGIL--E-TQAQ 266 (288)
T ss_pred ----CCCceEEEEecCH-------------------------HHHHHHHHHHHHHc----CCCcEEEEEeCc--H-hHHH
Confidence 2689999987421 11134677777776 999999998753 2 3344
Q ss_pred HHHHHHHhCCcEEee
Q 011002 323 VIDYALKKRDVKLVP 337 (496)
Q Consensus 323 vV~~~L~~~~~~lv~ 337 (496)
.|..++++. ++++.
T Consensus 267 ~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 267 SVCDAYEQG-FTVVE 280 (288)
T ss_pred HHHHHHHcc-Cceee
Confidence 445555554 66554
No 86
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=5.3e-10 Score=111.13 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=82.9
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.++.+|||+|||+|..+..++.. ...|+++|+|+.+++.+++++...|+. ++.++++|+..++... .+.||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-ETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-CCCCCEEEe
Confidence 45689999999999999999875 368999999999999999999999974 6899999987764322 378999997
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.... ..+ .....+|..+.++| +|||+|+....+
T Consensus 119 ~~vl---------------------~~~-~~~~~~l~~~~~~L----kpgG~l~i~~~n 151 (255)
T PRK11036 119 HAVL---------------------EWV-ADPKSVLQTLWSVL----RPGGALSLMFYN 151 (255)
T ss_pred hhHH---------------------Hhh-CCHHHHHHHHHHHc----CCCeEEEEEEEC
Confidence 4320 001 11234677778876 999999876444
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.15 E-value=8e-10 Score=109.82 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=86.0
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
+.++.+|||+|||+|..++.++.. + ...|+|+|+|+.+++.+++|+..+++. .+.+..+| ..||+|+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vv 184 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIV 184 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEE
Confidence 467999999999999888766553 3 347999999999999999999999883 34443322 2699999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcE
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVK 334 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~ 334 (496)
+|.. ......++..+.++| +|||+|++|.... +..+-+...+.+.+++
T Consensus 185 ani~-------------------------~~~~~~l~~~~~~~L----kpgG~lilsgi~~---~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 185 ANIL-------------------------ANPLLELAPDLARLL----KPGGRLILSGILE---EQADEVLEAYEEAGFT 232 (250)
T ss_pred EcCc-------------------------HHHHHHHHHHHHHhc----CCCcEEEEEECcH---hhHHHHHHHHHHCCCE
Confidence 8632 111234677777776 9999999986542 3445555666777777
Q ss_pred Eeec
Q 011002 335 LVPC 338 (496)
Q Consensus 335 lv~~ 338 (496)
++..
T Consensus 233 ~~~~ 236 (250)
T PRK00517 233 LDEV 236 (250)
T ss_pred EEEE
Confidence 6643
No 88
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.13 E-value=2.6e-10 Score=119.02 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=67.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc---------C---
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---------G--- 246 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~---------~--- 246 (496)
+.+|||+|||+|.+++.++... ..|+|+|+++.+++.+++|+..+|+.|+.++.+|+..+.... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3579999999999999998874 489999999999999999999999999999999987643210 0
Q ss_pred --CCCCCEEEECCCCCCCC
Q 011002 247 --LNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 247 --~~~FD~VLlDpPCSg~G 263 (496)
...||.|++|||-+|.+
T Consensus 275 ~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccCCCCEEEECCCCCCCc
Confidence 02389999999976543
No 89
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=9.4e-10 Score=105.47 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=85.6
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
.+...+.+.++.+|||+|||+|..+.++++. ...|+|+|+|+.+++.+++++...++.++.+...|...++. .+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DG 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CC
Confidence 4455566677889999999999999999875 25899999999999999999999999888888899876642 25
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.||+|++... + ...... ....++..+.++| +|||++++.+
T Consensus 95 ~fD~I~~~~~------~-------~~~~~~-------~~~~~l~~i~~~L----kpgG~~~~~~ 134 (197)
T PRK11207 95 EYDFILSTVV------L-------MFLEAK-------TIPGLIANMQRCT----KPGGYNLIVA 134 (197)
T ss_pred CcCEEEEecc------h-------hhCCHH-------HHHHHHHHHHHHc----CCCcEEEEEE
Confidence 7999997321 0 001111 2245677777776 9999976543
No 90
>PRK08317 hypothetical protein; Provisional
Probab=99.12 E-value=1.3e-09 Score=105.21 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=87.1
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
...+.+.++.+|||+|||+|..+..++..+++.+.|+++|+++.++..++++... ...++.+...|...++. ..+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~--~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPF--PDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCC--CCCCc
Confidence 3456778899999999999999999999885557999999999999999988433 23568888889876652 34789
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|.|+++-. + . .......++..+.++| +|||+|+++++.
T Consensus 89 D~v~~~~~------~---------------~-~~~~~~~~l~~~~~~L----~~gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRV------L---------------Q-HLEDPARALAEIARVL----RPGGRVVVLDTD 126 (241)
T ss_pred eEEEEech------h---------------h-ccCCHHHHHHHHHHHh----cCCcEEEEEecC
Confidence 99997421 0 0 0011234677778877 999999998875
No 91
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.11 E-value=1.1e-09 Score=108.71 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
+.++.+|||+|||+|..+..++..+ .+.+.|+|+|+|+.+++.+++++..++.. ++.++++|+..++. ..||.|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEE
Confidence 3578899999999999999888764 34579999999999999999999998875 58999999887652 458998
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~-~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
++.-. +..+. .....++..+.+.| +|||.|+.++..
T Consensus 130 v~~~~---------------------l~~l~~~~~~~~l~~i~~~L----kpGG~l~l~e~~ 166 (247)
T PRK15451 130 VLNFT---------------------LQFLEPSERQALLDKIYQGL----NPGGALVLSEKF 166 (247)
T ss_pred ehhhH---------------------HHhCCHHHHHHHHHHHHHhc----CCCCEEEEEEec
Confidence 86211 11111 12345788888887 999999998743
No 92
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.10 E-value=1.1e-09 Score=104.94 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred cccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Q 011002 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~ 234 (496)
|..+.|-..-. +..+...+.+.++.+|||+|||+|..+.+++.. ...|+|+|+|+.+++.+++++...|+. +.+.
T Consensus 8 ~~~~~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~ 82 (195)
T TIGR00477 8 YFHKKYGMTTT-HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTD 82 (195)
T ss_pred HHHHhhCCCCc-hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeE
Confidence 44454544423 333445666666789999999999999999974 368999999999999999999888885 6777
Q ss_pred ecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 235 NYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 235 ~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
..|...++. .+.||.|++..++.. .+.. ....++..+.++| +|||+++..+
T Consensus 83 ~~d~~~~~~---~~~fD~I~~~~~~~~-------------~~~~-------~~~~~l~~~~~~L----kpgG~lli~~ 133 (195)
T TIGR00477 83 AYDINAAAL---NEDYDFIFSTVVFMF-------------LQAG-------RVPEIIANMQAHT----RPGGYNLIVA 133 (195)
T ss_pred eccchhccc---cCCCCEEEEeccccc-------------CCHH-------HHHHHHHHHHHHh----CCCcEEEEEE
Confidence 777754432 257999997543211 0111 1234677777776 9999966554
No 93
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.09 E-value=1.7e-09 Score=111.50 Aligned_cols=108 Identities=17% Similarity=0.118 Sum_probs=81.7
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEE
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
.+.+|.+|||+|||+|..+..++.. .+.|+|+|+++.+++.++.++...+. .++.++++|+..++. ..+.||+|
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999999988863 36899999999999999988776554 468999999887763 23789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
++- ++ +.++. ....+|....++| ||||.|+.+|-
T Consensus 203 i~~------~v---------------LeHv~-d~~~~L~~l~r~L----kPGG~liist~ 236 (322)
T PLN02396 203 LSL------EV---------------IEHVA-NPAEFCKSLSALT----IPNGATVLSTI 236 (322)
T ss_pred EEh------hH---------------HHhcC-CHHHHHHHHHHHc----CCCcEEEEEEC
Confidence 871 11 11111 1234677777776 99999999874
No 94
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=6.5e-10 Score=114.62 Aligned_cols=122 Identities=25% Similarity=0.297 Sum_probs=95.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
..+|++||||.||-|.+|+.+|..-.. .|+|+|+||..++.|++|+..+++.+ |.++++|++.+.... +.||+|+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIi 261 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRII 261 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEE
Confidence 456999999999999999999987543 49999999999999999999999988 889999999987544 7899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC---CHHHHHHHHHhC
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE---NEAVIDYALKKR 331 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eE---NE~vV~~~L~~~ 331 (496)
++-|-+ ..+.+..|+.++ ++||.|.|-+-.-..+. ....+..+..+.
T Consensus 262 m~~p~~--------------------------a~~fl~~A~~~~----k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 262 MGLPKS--------------------------AHEFLPLALELL----KDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred eCCCCc--------------------------chhhHHHHHHHh----hcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 987732 234588888987 89999988764432221 334444444444
No 95
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=8.7e-10 Score=107.32 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=98.7
Q ss_pred cchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEe-cCCCCCcc
Q 011002 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN-YDGNELPK 243 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~-~D~~~l~~ 243 (496)
.-.+...++......+||++|++.|.-|++||..++..|+|+++|+++++.+.+++|+++.|+.+ |+++. +|+.+...
T Consensus 47 ~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 47 TGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 34455666666778899999999999999999999867999999999999999999999999987 77777 47766533
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
....+.||+||+|+- ...+...+..++++| +|||.||.-.-.+.
T Consensus 127 ~~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lL----r~GGliv~DNvl~~ 170 (219)
T COG4122 127 RLLDGSFDLVFIDAD-------------------------KADYPEYLERALPLL----RPGGLIVADNVLFG 170 (219)
T ss_pred hccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHh----CCCcEEEEeecccC
Confidence 223489999999973 123455688888887 99999998776655
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.07 E-value=4.5e-10 Score=114.24 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=88.7
Q ss_pred chhHHHhcC--CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcc
Q 011002 167 SFLPVMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPK 243 (496)
Q Consensus 167 S~l~v~~L~--~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~ 243 (496)
..+...+|. ..+|.+|||+|||+|-.++..+.+ +...|+|+|+++..++.+++|+..+|+.. +.+ . .....+
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~- 222 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLV- 222 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTC-
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eecccc-
Confidence 445555553 568999999999999999876665 34689999999999999999999999976 333 2 222222
Q ss_pred ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHH
Q 011002 244 VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 244 ~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~v 323 (496)
...||+|+.|= ++.....++.....+ ++|||+|+.|- +..++.+.|
T Consensus 223 ---~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~----l~~~G~lIlSG--Il~~~~~~v 268 (295)
T PF06325_consen 223 ---EGKFDLVVANI-------------------------LADVLLELAPDIASL----LKPGGYLILSG--ILEEQEDEV 268 (295)
T ss_dssp ---CS-EEEEEEES--------------------------HHHHHHHHHHCHHH----EEEEEEEEEEE--EEGGGHHHH
T ss_pred ---cccCCEEEECC-------------------------CHHHHHHHHHHHHHh----hCCCCEEEEcc--ccHHHHHHH
Confidence 27899999852 122223344444444 59999999975 555666666
Q ss_pred HHHHHHhCCcEEeec
Q 011002 324 IDYALKKRDVKLVPC 338 (496)
Q Consensus 324 V~~~L~~~~~~lv~~ 338 (496)
++.+ ++ +++++..
T Consensus 269 ~~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 269 IEAY-KQ-GFELVEE 281 (295)
T ss_dssp HHHH-HT-TEEEEEE
T ss_pred HHHH-HC-CCEEEEE
Confidence 6554 55 8887654
No 97
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=2.9e-09 Score=105.37 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=102.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCC---CccccCCCCCCEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNE---LPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~---l~~~~~~~~FD~V 253 (496)
.+..+||+|||+|..++.|+.-++ .++|+|+|.|+.++..+.+|++++++.+ +.+++.+... .+.....+..|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 356899999999999999999887 5999999999999999999999999977 6676554321 1211234789999
Q ss_pred EECCCCCCCCcc-cCCchhhccCCHHHHH---HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 254 LLDAPCSGTGVI-SKDESVKTSKSLEDIQ---KCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDpPCSg~Gvi-~r~p~i~~~~s~~~i~---~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
++||||--.--+ .-+|+++..-..-.+. ........++.-|.++| +|||.+++.+--. .+....|.+++.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L----q~gg~~~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML----QPGGFEQLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc----ccCCeEEEEeccc--ccCcHHHHHHHH
Confidence 999998543222 2355554432222111 11223344566677776 9999999986433 566778887775
Q ss_pred h
Q 011002 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
.
T Consensus 301 s 301 (328)
T KOG2904|consen 301 S 301 (328)
T ss_pred h
Confidence 4
No 98
>PHA03412 putative methyltransferase; Provisional
Probab=99.07 E-value=7.2e-10 Score=108.88 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=94.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~--~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.+.+|||+|||+|..++.++..+. ....|+|+|+++.+++.+++|+. ++.+.+.|+...+. .++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~---~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF---DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc---cCCccEEEE
Confidence 477999999999999999998763 24689999999999999998753 46788899876542 268999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE--------EEeCCCCC-cCCH--HHH
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV--------YSTCSIMV-TENE--AVI 324 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LV--------YSTCSl~~-eENE--~vV 324 (496)
|||+.-... .+.. .. ..-......++..|.+++ ++|+.|+ ||-|-... +|+. .-+
T Consensus 121 NPPY~~~~~--~d~~--ar------~~g~~~~~~li~~A~~Ll----~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 121 NPPFGKIKT--SDFK--GK------YTGAEFEYKVIERASQIA----RQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred CCCCCCccc--cccC--Cc------ccccHHHHHHHHHHHHHc----CCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 999876442 1110 00 001234456888999865 8877655 66666542 2332 234
Q ss_pred HHHHHhCCcEEe
Q 011002 325 DYALKKRDVKLV 336 (496)
Q Consensus 325 ~~~L~~~~~~lv 336 (496)
..|++..++.+.
T Consensus 187 ~~~~~~~~~~~~ 198 (241)
T PHA03412 187 KKFLDETGLEMN 198 (241)
T ss_pred HHHHHhcCeeec
Confidence 456666565543
No 99
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=2.6e-09 Score=107.38 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=93.5
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~ 247 (496)
+....|.++||++|||+|||-|+.++++|+.. +..|+|+++|++.++.+++.+...|+. +|.+...|-+++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----
Confidence 44566789999999999999999999999987 378999999999999999999999998 7999999988775
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSY-LQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~-lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
+.||+|+. .|+ +..+.. .....+..+...| +|||.++.-|-+...
T Consensus 136 e~fDrIvS------vgm---------------fEhvg~~~~~~ff~~~~~~L----~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 EPFDRIVS------VGM---------------FEHVGKENYDDFFKKVYALL----KPGGRMLLHSITGPD 181 (283)
T ss_pred cccceeee------hhh---------------HHHhCcccHHHHHHHHHhhc----CCCceEEEEEecCCC
Confidence 45999975 222 222222 2345677777776 999999987766443
No 100
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.05 E-value=3.9e-10 Score=107.28 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcccc--CCCCCCEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~--~~~~FD~V 253 (496)
-+|.+|||+|||+|..++..+.+ +...|+.+|.++..++.+++|++.+++.+ +.++..|+..+.... ....||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 36999999999999999876554 45699999999999999999999999987 888889975442211 34789999
Q ss_pred EECCCCC
Q 011002 254 LLDAPCS 260 (496)
Q Consensus 254 LlDpPCS 260 (496)
++|||+-
T Consensus 119 flDPPY~ 125 (183)
T PF03602_consen 119 FLDPPYA 125 (183)
T ss_dssp EE--STT
T ss_pred EECCCcc
Confidence 9999964
No 101
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.05 E-value=3.2e-10 Score=93.50 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=71.4
Q ss_pred eecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCC
Q 011002 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 183 LDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~ 262 (496)
||+|||+|..+..+++. ....|+++|+++.+++.++++....++ .+...|+..++ ++.++||+|++.-
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~--~~~~sfD~v~~~~----- 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGV---SFRQGDAEDLP--FPDNSFDVVFSNS----- 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTE---EEEESBTTSSS--S-TT-EEEEEEES-----
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCc---hheeehHHhCc--ccccccccccccc-----
Confidence 89999999999999988 347999999999999999998766544 48899999886 3458999999721
Q ss_pred CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 263 Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
+ +. .+ ..+..++.++.+.| ||||++++
T Consensus 69 -~--------~~-------~~-~~~~~~l~e~~rvL----k~gG~l~~ 95 (95)
T PF08241_consen 69 -V--------LH-------HL-EDPEAALREIYRVL----KPGGRLVI 95 (95)
T ss_dssp -H--------GG-------GS-SHHHHHHHHHHHHE----EEEEEEEE
T ss_pred -c--------ee-------ec-cCHHHHHHHHHHHc----CcCeEEeC
Confidence 1 00 11 34456788888887 99999974
No 102
>PLN02672 methionine S-methyltransferase
Probab=99.04 E-value=1.2e-09 Score=126.74 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=104.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------ceEEEEecCCCCCc
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----------------TNTIVCNYDGNELP 242 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~----------------~nv~v~~~D~~~l~ 242 (496)
+.+|||+|||+|..++.++...++ +.|+|+|+|+.+++.++.|+.++++ .+|.++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 468999999999999999998754 6999999999999999999998754 35899999987643
Q ss_pred cccCCCCCCEEEECCCCCCCCccc-CCchhhcc------------CCHHHH---HHHHHHHHHHHHHHHHhhhhcCCCCc
Q 011002 243 KVLGLNTVDRVLLDAPCSGTGVIS-KDESVKTS------------KSLEDI---QKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 243 ~~~~~~~FD~VLlDpPCSg~Gvi~-r~p~i~~~------------~s~~~i---~~l~~lQ~~LL~~A~~~L~~~lkpGG 306 (496)
... ...||+|++|||+-..+-+. -.|++.-. ...... ..-....++|+..|...| +|||
T Consensus 198 ~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L----~pgG 272 (1082)
T PLN02672 198 RDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI----KPMG 272 (1082)
T ss_pred ccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhc----cCCC
Confidence 211 13699999999997766432 12223200 000000 123355678888888887 9999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 011002 307 YIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 307 ~LVYSTCSl~~eENE~vV~~~L~~~~~~lv 336 (496)
.|++- +.....++|.+.++.+.+++.+
T Consensus 273 ~l~lE---iG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 273 IMIFN---MGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEE---ECccHHHHHHHHHHHHCCCCee
Confidence 88753 4555666666556666665443
No 103
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.04 E-value=1e-09 Score=109.02 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=79.5
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+|+.+++.++++ ++.++.+|+..++. .+.|
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---~~~f 90 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP---KPDT 90 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---CCCc
Confidence 4456667889999999999999999998864 47899999999999988652 46788899877642 3689
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|+|+++... ..+ ..+..++..+.+.| +|||+|+.+
T Consensus 91 D~v~~~~~l---------------------~~~-~d~~~~l~~~~~~L----kpgG~l~~~ 125 (255)
T PRK14103 91 DVVVSNAAL---------------------QWV-PEHADLLVRWVDEL----APGSWIAVQ 125 (255)
T ss_pred eEEEEehhh---------------------hhC-CCHHHHHHHHHHhC----CCCcEEEEE
Confidence 999985531 001 11245677888876 999999876
No 104
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.04 E-value=2.1e-09 Score=107.66 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=86.2
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
.++..+.+.++.+|||+|||+|+.+..++... .+.|+++|+++.+++.+++++.. ..++.+...|+...+ ++.+
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~--~~~~ 116 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKD--FPEN 116 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCC--CCCC
Confidence 34455778899999999999999999988754 36899999999999999988654 346888999987654 3347
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~-~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.||+|++-.- +.++. .....+|..+.++| +|||+|+.+...
T Consensus 117 ~FD~V~s~~~---------------------l~h~~~~d~~~~l~~i~r~L----kPGG~lvi~d~~ 158 (263)
T PTZ00098 117 TFDMIYSRDA---------------------ILHLSYADKKKLFEKCYKWL----KPNGILLITDYC 158 (263)
T ss_pred CeEEEEEhhh---------------------HHhCCHHHHHHHHHHHHHHc----CCCcEEEEEEec
Confidence 8999987210 11111 12345788888887 999999987643
No 105
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.04 E-value=2.7e-09 Score=105.86 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=82.4
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
.....+.+.++.+|||+|||+|..+..++...+ .+.|+|+|+++.+++.+++++ .++.+..+|+..+.. ..
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~---~~ 92 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP---PQ 92 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC---CC
Confidence 334455667899999999999999999998864 479999999999999988764 467788899876542 26
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.||+|+++.... |. ..+..+|..+.+.| +|||+++.++
T Consensus 93 ~fD~v~~~~~l~------------~~----------~d~~~~l~~~~~~L----kpgG~~~~~~ 130 (258)
T PRK01683 93 ALDLIFANASLQ------------WL----------PDHLELFPRLVSLL----APGGVLAVQM 130 (258)
T ss_pred CccEEEEccChh------------hC----------CCHHHHHHHHHHhc----CCCcEEEEEC
Confidence 899999865311 10 01245677778876 9999998864
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=3.3e-09 Score=106.41 Aligned_cols=148 Identities=13% Similarity=0.023 Sum_probs=97.0
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
.+..+.+|||+|||+|..++.++...+. ..|+++|+++.+++.+++++ .++.++++|+..+.. ...||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc---cCCCcEEE
Confidence 4455679999999999999988876533 58999999999999988763 367889999987652 26899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE--EEEeCCC-CCcCCHHHHHHHHHhC
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI--VYSTCSI-MVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~L--VYSTCSl-~~eENE~vV~~~L~~~ 331 (496)
+|||+.............++-.......+ .-.+++.....+| +|+|.+ +||+--+ +..=..+-...+|+.+
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L----~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFI----VPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHhee----cCCceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 99998765433222222221100000000 0123455555554 999965 4554322 3334556667788888
Q ss_pred CcEEee
Q 011002 332 DVKLVP 337 (496)
Q Consensus 332 ~~~lv~ 337 (496)
++.+.+
T Consensus 206 g~~~~~ 211 (279)
T PHA03411 206 GLVTYA 211 (279)
T ss_pred CcEecC
Confidence 887754
No 107
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.03 E-value=1.3e-09 Score=109.82 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=82.0
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~ 247 (496)
+....++++||++|||+|||-|+.+.++|+..+ ..|+++.+|+...+.+++.+.+.|+.+ +.+...|.++++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-----
Confidence 445667899999999999999999999999873 689999999999999999999999975 889999987765
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
..||+|++ .|++-.- ... ....++..+.++| +|||.++.-+++..
T Consensus 126 ~~fD~IvS------i~~~Ehv-------g~~-------~~~~~f~~~~~~L----kpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 GKFDRIVS------IEMFEHV-------GRK-------NYPAFFRKISRLL----KPGGRLVLQTITHR 170 (273)
T ss_dssp -S-SEEEE------ESEGGGT-------CGG-------GHHHHHHHHHHHS----ETTEEEEEEEEEE-
T ss_pred CCCCEEEE------Eechhhc-------Chh-------HHHHHHHHHHHhc----CCCcEEEEEecccc
Confidence 48999986 2322110 111 1234577777776 99999988766653
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.03 E-value=5e-09 Score=101.57 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~ 248 (496)
.+..+.+.++.+|||+|||+|..+..++...+....|+++|+++.+++.+++++...+.. ++.+...|+..++. ..+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~ 120 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--PDN 120 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--CCC
Confidence 344555667899999999999999999988753579999999999999999999876654 58888899877652 236
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.||+|++.- + +..-+ ....+|..+..+| +|||+|++++.+.
T Consensus 121 ~~D~I~~~~-----~-l~~~~----------------~~~~~l~~~~~~L----~~gG~li~~~~~~ 161 (239)
T PRK00216 121 SFDAVTIAF-----G-LRNVP----------------DIDKALREMYRVL----KPGGRLVILEFSK 161 (239)
T ss_pred CccEEEEec-----c-cccCC----------------CHHHHHHHHHHhc----cCCcEEEEEEecC
Confidence 899998621 1 10000 0134577777776 9999999876554
No 109
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.02 E-value=8.7e-10 Score=115.70 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=83.1
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPC 259 (496)
-+|||++||+|..++.++...++...|++||+|+..++.+++|++.+++.++.+++.|+..+.... ...||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDPf- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-NRKFHVIDIDPF- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCCC-
Confidence 489999999999999998875444689999999999999999999999999999999998764322 257999999996
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 260 Sg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|+. ..+|..|++.+ ++||.|. .|||
T Consensus 124 -Gs~------------------------~~fld~al~~~----~~~glL~-vTaT 148 (374)
T TIGR00308 124 -GTP------------------------APFVDSAIQAS----AERGLLL-VTAT 148 (374)
T ss_pred -CCc------------------------HHHHHHHHHhc----ccCCEEE-EEec
Confidence 321 13588888887 8887664 4544
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=3.8e-09 Score=86.43 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=80.8
Q ss_pred eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCS 260 (496)
+|||+|||+|..+..++. .....++++|+++..+..+++.....+..++.+...|...... .....||+|++++||.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999988877 3457999999999999998876555566678888999887653 1237899999999976
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 261 g~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.. ......++..+.+.+ ++||.++++
T Consensus 78 ~~---------------------~~~~~~~l~~~~~~l----~~~g~~~~~ 103 (107)
T cd02440 78 HL---------------------VEDLARFLEEARRLL----KPGGVLVLT 103 (107)
T ss_pred eh---------------------hhHHHHHHHHHHHHc----CCCCEEEEE
Confidence 43 223455677777776 999999876
No 111
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.01 E-value=1.3e-09 Score=107.88 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=85.3
Q ss_pred EecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC
Q 011002 162 LQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL 241 (496)
Q Consensus 162 iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l 241 (496)
+|...+..+...+...++.+|||+|||+|..+..++.. ...|+++|+|+.+++.++++.. .+.++++|+..+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~ 97 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC
Confidence 56665555566666667889999999999999888763 3689999999999999887643 235678888776
Q ss_pred ccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 242 ~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+. ..+.||+|+++.+ +.|.. ....+|..+.++| +|||.|+++|..
T Consensus 98 ~~--~~~~fD~V~s~~~------------l~~~~----------d~~~~l~~~~~~L----k~gG~l~~~~~~ 142 (251)
T PRK10258 98 PL--ATATFDLAWSNLA------------VQWCG----------NLSTALRELYRVV----RPGGVVAFTTLV 142 (251)
T ss_pred cC--CCCcEEEEEECch------------hhhcC----------CHHHHHHHHHHHc----CCCeEEEEEeCC
Confidence 53 3468999997543 11111 1234677888876 999999998744
No 112
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=1.7e-09 Score=103.38 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcccc-C-CCCCCEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-G-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~-~-~~~FD~VL 254 (496)
+|.+|||+|||+|..++.++... ...|+++|.++..++.+++|++.+++. ++.+++.|+..+.... . ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 58899999999999999888763 358999999999999999999999986 5899999985542211 1 12489999
Q ss_pred ECCCCC
Q 011002 255 LDAPCS 260 (496)
Q Consensus 255 lDpPCS 260 (496)
+|||+.
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999974
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=3.4e-09 Score=114.47 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=86.0
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
.+..+.+.++.+|||+|||+|..+..++... ...|+|+|+|+.+++.+++++...+ .++.+..+|....+ ++.+.
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~--~~~~~ 332 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKT--YPDNS 332 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCC--CCCCC
Confidence 3444556788999999999999999998876 3689999999999999998876433 35889999987765 23368
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
||+|++. +++-.-+ ....+|..+.+.| +|||+|+.++....
T Consensus 333 fD~I~s~------~~l~h~~----------------d~~~~l~~~~r~L----kpgG~l~i~~~~~~ 373 (475)
T PLN02336 333 FDVIYSR------DTILHIQ----------------DKPALFRSFFKWL----KPGGKVLISDYCRS 373 (475)
T ss_pred EEEEEEC------CcccccC----------------CHHHHHHHHHHHc----CCCeEEEEEEeccC
Confidence 9999973 1111110 1234678888887 99999998875543
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=99.00 E-value=4.1e-09 Score=106.97 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=83.8
Q ss_pred CCCeEeecccCCcHHHHHH-HHHcCCCcEEEEEeCCHHHHHHHHHHHHH-cCCce-EEEEecCCCCCccccCCCCCCEEE
Q 011002 178 EKERVIDMAAAPGGKTTYI-AALMKNTGLIYANEMKASRLKSLTANLHR-MGVTN-TIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~l-A~l~~~~g~V~AvDis~~rl~~l~~nl~r-~g~~n-v~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
++.+|+|+|||||+.|..+ ++.+.+.+.++++|+++.+++.+++++.+ .|+.+ +.+..+|+.+..... +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 6789999999999886654 33444568999999999999999999965 88865 999999998764332 6899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+++ +-+ ++ ...+.++|.+..+.| +|||+|++-+.
T Consensus 201 ~~A-Li~-------------~d-------k~~k~~vL~~l~~~L----kPGG~Lvlr~~ 234 (296)
T PLN03075 201 LAA-LVG-------------MD-------KEEKVKVIEHLGKHM----APGALLMLRSA 234 (296)
T ss_pred Eec-ccc-------------cc-------cccHHHHHHHHHHhc----CCCcEEEEecc
Confidence 973 111 10 123456788888887 99999999873
No 115
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.9e-09 Score=100.95 Aligned_cols=82 Identities=27% Similarity=0.317 Sum_probs=67.0
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCC-CCCCEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL-NTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~-~~FD~VL 254 (496)
-.|.+|||++||+|+.++..+.+ +...++.+|.|...+..+++|++.+++. ++.++..|+..+...... +.||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 47999999999999999877665 4569999999999999999999999964 488888888754222221 2499999
Q ss_pred ECCCCC
Q 011002 255 LDAPCS 260 (496)
Q Consensus 255 lDpPCS 260 (496)
+|||+-
T Consensus 120 lDPPy~ 125 (187)
T COG0742 120 LDPPYA 125 (187)
T ss_pred eCCCCc
Confidence 999974
No 116
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.99 E-value=8e-10 Score=107.99 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=80.4
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
-+|.+|||+|||-|..+..||++- ..|+|+|+++..++.++..+...|+. +........++.. ..++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~--~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS--AGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh--cCCCccEEEEh
Confidence 479999999999999999999862 68999999999999999999998885 4344444433332 12799999981
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+-+.+. ..-..++.++.++| ||||.++.||-.
T Consensus 132 ---------------------EVlEHv-~dp~~~~~~c~~lv----kP~G~lf~STin 163 (243)
T COG2227 132 ---------------------EVLEHV-PDPESFLRACAKLV----KPGGILFLSTIN 163 (243)
T ss_pred ---------------------hHHHcc-CCHHHHHHHHHHHc----CCCcEEEEeccc
Confidence 222222 22344788899987 999999999865
No 117
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.98 E-value=1.4e-08 Score=98.53 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=91.0
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
.+|||+|||+|+.+..+++..+ ...|+++|+|+..+..++.++...|+. ++.+...|....+. .+.||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~-- 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGF-- 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehH--
Confidence 3799999999999999998874 368999999999999999999998885 48888888865432 2579999851
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC---CCcC---------CHHHHHH
Q 011002 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI---MVTE---------NEAVIDY 326 (496)
Q Consensus 259 CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl---~~eE---------NE~vV~~ 326 (496)
+ .+... .....++..+.++| +|||+++.++... .+.. ...-...
T Consensus 75 ----~---------------~l~~~-~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 75 ----E---------------VIHHI-KDKMDLFSNISRHL----KDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred ----H---------------HHHhC-CCHHHHHHHHHHHc----CCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 1 11111 11345677777876 9999999876421 1111 1233445
Q ss_pred HHHhCCcEEeec
Q 011002 327 ALKKRDVKLVPC 338 (496)
Q Consensus 327 ~L~~~~~~lv~~ 338 (496)
++.+.+++++..
T Consensus 131 ~l~~~Gf~~~~~ 142 (224)
T smart00828 131 LLARNNLRVVEG 142 (224)
T ss_pred HHHHCCCeEEEe
Confidence 566677776553
No 118
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.2e-09 Score=102.03 Aligned_cols=126 Identities=25% Similarity=0.244 Sum_probs=88.3
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc------ccCCCC
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK------VLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~------~~~~~~ 249 (496)
+.+|.+|+|+||+|||++..++..++..+.|+|+|+.+-.. +.+|.++.+|.+.-.. .+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 46799999999999999999999999888999999988432 3568999999876421 223345
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
+|+|++|+---.+|+. +.++. .+..|...|+++...+|+|||.+|.. ++.-++++.+-+.++
T Consensus 112 ~DvV~sD~ap~~~g~~----------~~Dh~-----r~~~L~~~a~~~a~~vL~~~G~fv~K---~fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAPNTSGNR----------SVDHA-----RSMYLCELALEFALEVLKPGGSFVAK---VFQGEDFEDLLKALR 173 (205)
T ss_pred cceEEecCCCCcCCCc----------cccHH-----HHHHHHHHHHHHHHHeeCCCCeEEEE---EEeCCCHHHHHHHHH
Confidence 7999999765555543 22222 23334455555555556999999865 445566666555555
Q ss_pred h
Q 011002 330 K 330 (496)
Q Consensus 330 ~ 330 (496)
+
T Consensus 174 ~ 174 (205)
T COG0293 174 R 174 (205)
T ss_pred H
Confidence 4
No 119
>PRK06922 hypothetical protein; Provisional
Probab=98.97 E-value=6.3e-09 Score=114.77 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=89.7
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
.++..+|.+|||+|||+|..+..++...+ .+.|+|+|+|+.+++.+++++...+. ++.++.+|+..++..++.+.||+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEE
Confidence 44555789999999999999998988765 47999999999999999998876664 57788899888765455678999
Q ss_pred EEECCCCCCC-CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 253 VLLDAPCSGT-GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDpPCSg~-Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
|++.++.-.. ..+.. ... .+.. .....+|..+.+.| ||||+++.+.-++
T Consensus 491 VVsn~vLH~L~syIp~-~g~--~f~~-------edl~kiLreI~RVL----KPGGrLII~D~v~ 540 (677)
T PRK06922 491 IVYSSILHELFSYIEY-EGK--KFNH-------EVIKKGLQSAYEVL----KPGGRIIIRDGIM 540 (677)
T ss_pred EEEchHHHhhhhhccc-ccc--cccH-------HHHHHHHHHHHHHc----CCCcEEEEEeCcc
Confidence 9986541000 00000 000 0111 22345688888886 9999999976443
No 120
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.97 E-value=4.6e-10 Score=108.65 Aligned_cols=109 Identities=20% Similarity=0.275 Sum_probs=86.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcccc----CCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL----GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~----~~~~FD~ 252 (496)
...+||++|++.|.-|++||..+++.|+|+++|+++.+.+.+++++++.|+. .|.++.+|+.+....+ ..+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4569999999999999999999988899999999999999999999999996 4999999997642211 1257999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
||+|+.= ..+...+..++.+| +|||.||.-.+-+
T Consensus 125 VFiDa~K-------------------------~~y~~y~~~~~~ll----~~ggvii~DN~l~ 158 (205)
T PF01596_consen 125 VFIDADK-------------------------RNYLEYFEKALPLL----RPGGVIIADNVLW 158 (205)
T ss_dssp EEEESTG-------------------------GGHHHHHHHHHHHE----EEEEEEEEETTTG
T ss_pred EEEcccc-------------------------cchhhHHHHHhhhc----cCCeEEEEccccc
Confidence 9999850 11234566677776 9999999876654
No 121
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=6.5e-09 Score=97.02 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=69.9
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
+..+++.++.+|||+|||+|..|..++.. .+.|+|+|+++.+++.+++++.. ..++.++++|+..++.. ...|
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~--~~~~ 78 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP--KLQP 78 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc--ccCC
Confidence 45567788999999999999999999886 26899999999999999999864 45789999999887532 2469
Q ss_pred CEEEECCCCC
Q 011002 251 DRVLLDAPCS 260 (496)
Q Consensus 251 D~VLlDpPCS 260 (496)
|.|+.|+|+.
T Consensus 79 d~vi~n~Py~ 88 (169)
T smart00650 79 YKVVGNLPYN 88 (169)
T ss_pred CEEEECCCcc
Confidence 9999999963
No 122
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.94 E-value=1.4e-08 Score=104.82 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=82.0
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~ 249 (496)
...+.+.+|.+|||+|||+|..+..++... ...|+|+|+|+.++.......+..+. .++.++..|+..++. .+.
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~~~ 189 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---LKA 189 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---cCC
Confidence 335566678999999999999999888863 24799999999988765544444432 468899999888764 378
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
||+|++ .|++.+. .+ ...+|..+.+.| +|||.||++|..+
T Consensus 190 FD~V~s------~~vl~H~------~d----------p~~~L~~l~~~L----kpGG~lvl~~~~i 229 (322)
T PRK15068 190 FDTVFS------MGVLYHR------RS----------PLDHLKQLKDQL----VPGGELVLETLVI 229 (322)
T ss_pred cCEEEE------CChhhcc------CC----------HHHHHHHHHHhc----CCCcEEEEEEEEe
Confidence 999996 2333211 11 133577777876 9999999886443
No 123
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.93 E-value=3.4e-09 Score=90.21 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=73.5
Q ss_pred EeecccCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCC
Q 011002 182 VIDMAAAPGGKTTYIAALMK--NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~--~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPC 259 (496)
|||+|||+|..+..++..+. ....++++|+|+.+++.++++....++ ++.+++.|+.+++... +.||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~--~~~D~v~~---- 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD--GKFDLVVC---- 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS--SSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC--CCeeEEEE----
Confidence 79999999999999999872 226899999999999999999998777 7889999999887533 79999997
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 011002 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 260 Sg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG 306 (496)
++..+ . ..+..+ +..++.+..+++ +|||
T Consensus 74 ~~~~~-------~-~~~~~~-------~~~ll~~~~~~l----~pgG 101 (101)
T PF13649_consen 74 SGLSL-------H-HLSPEE-------LEALLRRIARLL----RPGG 101 (101)
T ss_dssp -TTGG-------G-GSSHHH-------HHHHHHHHHHTE----EEEE
T ss_pred cCCcc-------C-CCCHHH-------HHHHHHHHHHHh----CCCC
Confidence 21111 0 122222 356788888887 9998
No 124
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.93 E-value=1.5e-08 Score=99.58 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=82.8
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
.++.+|||+|||+|..+..++..+. +.+.|+++|+|+.+++.+++++...+. .++.++.+|+..++. ..+|.|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCEEe
Confidence 5788999999999999999988753 357999999999999999999988765 368899999987752 4589887
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+.-. .. ..... ....+|..+.+.| +|||.|+.+.-
T Consensus 128 ~~~~---l~----------~~~~~-------~~~~~l~~i~~~L----kpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFT---LQ----------FLPPE-------DRIALLTKIYEGL----NPNGVLVLSEK 162 (239)
T ss_pred eecc---hh----------hCCHH-------HHHHHHHHHHHhc----CCCeEEEEeec
Confidence 5211 00 01111 1235688888876 99999998864
No 125
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.91 E-value=2.1e-08 Score=103.10 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=81.1
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCC
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
.+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..+...-+..+. .++.+...|...++.. ..||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CCcC
Confidence 446778999999999999998888765 235799999999998765443333332 3577777887777642 5799
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eEN 320 (496)
.|++ .|++-.. .++ ...|..+.+.| +|||.||.+|..+...++
T Consensus 191 ~V~s------~gvL~H~------~dp----------~~~L~el~r~L----kpGG~Lvletl~i~g~~~ 233 (314)
T TIGR00452 191 TVFS------MGVLYHR------KSP----------LEHLKQLKHQL----VIKGELVLETLVIDGDLN 233 (314)
T ss_pred EEEE------cchhhcc------CCH----------HHHHHHHHHhc----CCCCEEEEEEEEecCccc
Confidence 9997 3333211 111 23577777776 999999999876654443
No 126
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.91 E-value=4.6e-09 Score=97.91 Aligned_cols=84 Identities=29% Similarity=0.296 Sum_probs=61.0
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCC-CCEEEECC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNT-VDRVLLDA 257 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~-FD~VLlDp 257 (496)
..|||+|||.||-|+++|... ..|+|+|+++.+++.++.|++-+|+. +|.++++|..++........ ||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 369999999999999999874 47999999999999999999999985 69999999987644332222 89999999
Q ss_pred CCCCCCccc
Q 011002 258 PCSGTGVIS 266 (496)
Q Consensus 258 PCSg~Gvi~ 266 (496)
|=-|-....
T Consensus 78 PWGGp~Y~~ 86 (163)
T PF09445_consen 78 PWGGPSYSK 86 (163)
T ss_dssp -BSSGGGGG
T ss_pred CCCCccccc
Confidence 976655443
No 127
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.90 E-value=2.3e-09 Score=109.36 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=101.8
Q ss_pred ceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHcCCce-
Q 011002 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALM------KNTGLIYANEMKASRLKSLTANLHRMGVTN- 230 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~------~~~g~V~AvDis~~rl~~l~~nl~r~g~~n- 230 (496)
|.|+--..-+.+.+.++.+.++.+|||.|||+|++.+.+...+ .....++|+|+++..+..++-|+.-.|+..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 4333333445577788889999999999999999998887754 234689999999999999999987777643
Q ss_pred -EEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccC--CchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 231 -TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 231 -v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r--~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
..+...|....+.......||.||+|||....+.... ..+.+|... ...-......++.++++.| ++||+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Fi~~~l~~L----k~~G~ 178 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEYAFIEHALSLL----KPGGR 178 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHHHHHHHHHHTE----EEEEE
T ss_pred cccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchhhhhHHHHHhhc----ccccc
Confidence 4678888765543322368999999999887643111 011122211 0000111223678888987 99998
Q ss_pred EEEEeCC-CCCcCC--HHHHHHHHHhCCcE
Q 011002 308 IVYSTCS-IMVTEN--EAVIDYALKKRDVK 334 (496)
Q Consensus 308 LVYSTCS-l~~eEN--E~vV~~~L~~~~~~ 334 (496)
+++..-+ +....+ ..+-++++++..++
T Consensus 179 ~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 179 AAIILPNGFLFSSSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp EEEEEEHHHHHGSTHHHHHHHHHHHHEEEE
T ss_pred eeEEecchhhhccchHHHHHHHHHhhchhh
Confidence 7766543 222232 34556777775433
No 128
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.90 E-value=1.9e-08 Score=96.44 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=84.5
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCC
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
..+...++.+|||+|||+|..+..++...+..+.++++|+++..+..++++.. ...++.+..+|+.+++. ..+.||
T Consensus 33 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~--~~~~~D 108 (223)
T TIGR01934 33 KLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF--EDNSFD 108 (223)
T ss_pred HHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC--CCCcEE
Confidence 33445578999999999999999999887644789999999999999998876 33468888899887652 336899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
+|++.- + +.. ..+ -..+|..+..+| +|||+|+..+.+.
T Consensus 109 ~i~~~~-----~-~~~---------~~~-------~~~~l~~~~~~L----~~gG~l~~~~~~~ 146 (223)
T TIGR01934 109 AVTIAF-----G-LRN---------VTD-------IQKALREMYRVL----KPGGRLVILEFSK 146 (223)
T ss_pred EEEEee-----e-eCC---------ccc-------HHHHHHHHHHHc----CCCcEEEEEEecC
Confidence 998621 1 100 001 124577777776 9999999887664
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.90 E-value=5.6e-08 Score=99.18 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=91.9
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~ 247 (496)
.++..+...++.+|||+|||+|..+..+++..++ ..++++|. +..++.+++++...|+. ++.++.+|+...+ +
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~-- 213 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y-- 213 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C--
Confidence 3445566778899999999999999999998754 78999997 78999999999999986 4899999987543 2
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE 321 (496)
..+|.|++- +++ ..++... -..+|.++.+.| +|||+|+.....+...++.
T Consensus 214 ~~~D~v~~~------~~l-------h~~~~~~-------~~~il~~~~~~L----~pgG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 214 PEADAVLFC------RIL-------YSANEQL-------STIMCKKAFDAM----RSGGRLLILDMVIDDPENP 263 (306)
T ss_pred CCCCEEEeE------hhh-------hcCChHH-------HHHHHHHHHHhc----CCCCEEEEEEeccCCCCCc
Confidence 347998761 111 1122221 245788888887 9999999888766554443
No 130
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.90 E-value=1.9e-08 Score=101.91 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.++.+|||+|||+|..+.+++.. ...|+|+|+|+.+++.+++++...++ ++.+...|+..... .+.||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~---~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI---QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc---cCCccEEEEc
Confidence 34559999999999999999874 36899999999999999999999998 78888888766432 3789999974
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
..+. .... .....++..+.++| +|||++++.
T Consensus 192 ~vl~-------------~l~~-------~~~~~~l~~~~~~L----kpgG~~l~v 222 (287)
T PRK12335 192 VVLM-------------FLNR-------ERIPAIIKNMQEHT----NPGGYNLIV 222 (287)
T ss_pred chhh-------------hCCH-------HHHHHHHHHHHHhc----CCCcEEEEE
Confidence 3210 0011 12235677777776 999996653
No 131
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.89 E-value=7.3e-09 Score=99.14 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=63.9
Q ss_pred EEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|-+...-|.+ ..++..-++.++||+|||.|.-+++||.+ +-.|+|+|+|+..++.+.+.+...+++ |.+...|..
T Consensus 13 y~~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~ 87 (192)
T PF03848_consen 13 YGLTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLN 87 (192)
T ss_dssp HTB----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGC
T ss_pred hCCCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecch
Confidence 3344444443 45566556789999999999999999986 248999999999999999999999987 888889987
Q ss_pred CCccccCCCCCCEEEE
Q 011002 240 ELPKVLGLNTVDRVLL 255 (496)
Q Consensus 240 ~l~~~~~~~~FD~VLl 255 (496)
.+.. .+.||.|++
T Consensus 88 ~~~~---~~~yD~I~s 100 (192)
T PF03848_consen 88 DFDF---PEEYDFIVS 100 (192)
T ss_dssp CBS----TTTEEEEEE
T ss_pred hccc---cCCcCEEEE
Confidence 6542 267999985
No 132
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.7e-08 Score=98.51 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=81.4
Q ss_pred CcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcc
Q 011002 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPK 243 (496)
Q Consensus 165 ~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~ 243 (496)
+...++.+.|++.||.+||+.|+|+|+.+.+|+..++++|.|+.+|++..|.+.+.+..+..|+. |+.++.-|......
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 34556778899999999999999999999999999999999999999999999999999999994 68888888765432
Q ss_pred ccCCCCCCEEEECCC
Q 011002 244 VLGLNTVDRVLLDAP 258 (496)
Q Consensus 244 ~~~~~~FD~VLlDpP 258 (496)
......+|.|++|-|
T Consensus 172 ~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP 186 (314)
T ss_pred cccccccceEEEcCC
Confidence 233478999999988
No 133
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.87 E-value=1.7e-08 Score=106.46 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
+...+.+++|.+|||+|||+|+.+.+++...+ ..|+|+|+|+.+++.+++++. ++ ++.+...|...++ +.
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~-----~~ 228 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLN-----GQ 228 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcC-----CC
Confidence 34556788999999999999999999998753 589999999999999999885 33 3677778876542 68
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
||.|++-. ++.. ... .....++..+.++| +|||+++.++.+.
T Consensus 229 fD~Ivs~~------~~eh-------vg~-------~~~~~~l~~i~r~L----kpGG~lvl~~i~~ 270 (383)
T PRK11705 229 FDRIVSVG------MFEH-------VGP-------KNYRTYFEVVRRCL----KPDGLFLLHTIGS 270 (383)
T ss_pred CCEEEEeC------chhh-------CCh-------HHHHHHHHHHHHHc----CCCcEEEEEEccC
Confidence 99998632 1100 000 11234677777776 9999999876543
No 134
>PRK04457 spermidine synthase; Provisional
Probab=98.86 E-value=1.3e-08 Score=102.05 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=85.2
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.++.+|||+|||.|..+..++...+ ...|+++|+++..++.+++++...+. .++.++.+|+..+.... ...||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEE
Confidence 3567899999999999999998875 47899999999999999998865554 57899999997763322 268999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|+- .+.+. |.. ....+++..+.+.| +|||.|+...++
T Consensus 143 D~~-~~~~~----~~~-------------l~t~efl~~~~~~L----~pgGvlvin~~~ 179 (262)
T PRK04457 143 DGF-DGEGI----IDA-------------LCTQPFFDDCRNAL----SSDGIFVVNLWS 179 (262)
T ss_pred eCC-CCCCC----ccc-------------cCcHHHHHHHHHhc----CCCcEEEEEcCC
Confidence 962 22221 100 01245677777876 999999986544
No 135
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.86 E-value=4.3e-08 Score=95.09 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=96.8
Q ss_pred cchhHHHhc------CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 166 SSFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 166 sS~l~v~~L------~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
-|-|++..+ .+.+|.+||-+||++|..-.|+++..+.+|.|+|+|.++...+.|...+++- +||..+..|++
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr 132 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDAR 132 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TT
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCC
Confidence 466766654 3678999999999999999999999998999999999999998888777664 68999999998
Q ss_pred CCcccc-CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHH-HHHHHHhhhhcCCCCcEEEEEe--CCC
Q 011002 240 ELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL-ILAAIDMVDANSKSGGYIVYST--CSI 315 (496)
Q Consensus 240 ~l~~~~-~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~L-L~~A~~~L~~~lkpGG~LVYST--CSl 315 (496)
...... --+.+|+|++|..- ..|.++ +.+|-.+| |+||+++.+- -|+
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVaQ-------------------------p~Qa~I~~~Na~~fL----k~gG~~~i~iKa~si 183 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVAQ-------------------------PDQARIAALNARHFL----KPGGHLIISIKARSI 183 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-SS-------------------------TTHHHHHHHHHHHHE----EEEEEEEEEEEHHHH
T ss_pred ChHHhhcccccccEEEecCCC-------------------------hHHHHHHHHHHHhhc----cCCcEEEEEEecCcc
Confidence 653221 12589999999751 124443 44555565 9999988774 334
Q ss_pred -CCcCCHHHHHHHHHh---CCcEEee
Q 011002 316 -MVTENEAVIDYALKK---RDVKLVP 337 (496)
Q Consensus 316 -~~eENE~vV~~~L~~---~~~~lv~ 337 (496)
.....++|...-.++ .++++++
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 334666666654443 4566544
No 136
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.84 E-value=6.2e-08 Score=94.58 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=83.2
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
....+.+.++.+|||+|||+|..+..++.. ...|+++|+++..++.++.++...+. ++.+...|...++.. ..+.
T Consensus 40 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 114 (233)
T PRK05134 40 IREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-HPGQ 114 (233)
T ss_pred HHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-cCCC
Confidence 334444567899999999999999888775 25799999999999999999988776 567777777665422 2368
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
||+|++.-.+...+ ....+|..+.++| +|||+|+.+++.
T Consensus 115 fD~Ii~~~~l~~~~----------------------~~~~~l~~~~~~L----~~gG~l~v~~~~ 153 (233)
T PRK05134 115 FDVVTCMEMLEHVP----------------------DPASFVRACAKLV----KPGGLVFFSTLN 153 (233)
T ss_pred ccEEEEhhHhhccC----------------------CHHHHHHHHHHHc----CCCcEEEEEecC
Confidence 99999732211110 1124577777776 999999998875
No 137
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=1.5e-08 Score=100.71 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=91.9
Q ss_pred hhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcccc-
Q 011002 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL- 245 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~- 245 (496)
.+...++......+||++|++.|.-|++||..++..|+|+++|.++.+.+.+++++++.|+. +|.++.+|+.+....+
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 34444444445679999999999999999998888899999999999999999999999985 4999999987642221
Q ss_pred C----CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 246 G----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 246 ~----~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
. .+.||.||+|+- .......+..++++| +|||.||.-.+-++
T Consensus 149 ~~~~~~~~fD~iFiDad-------------------------K~~Y~~y~~~~l~ll----~~GGviv~DNvl~~ 194 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------------------------KDNYINYHKRLIDLV----KVGGVIGYDNTLWN 194 (247)
T ss_pred hccccCCcccEEEecCC-------------------------HHHhHHHHHHHHHhc----CCCeEEEEcCCCCC
Confidence 1 258999999974 011234466667776 99999987655443
No 138
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.82 E-value=4.5e-08 Score=101.57 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=78.3
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.++.+|||+|||+|..+..++...+. +.|+++|+++.+++.++++.. ..++.++.+|+..++. ..+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~--~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF--PTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC--CCCceeEEEEc
Confidence 46889999999999999998887643 689999999999999998764 3467788999887653 34789999973
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.. +..-+ ....+|.++.++| +|||+|+...
T Consensus 186 ~~------L~~~~----------------d~~~~L~e~~rvL----kPGG~LvIi~ 215 (340)
T PLN02490 186 GS------IEYWP----------------DPQRGIKEAYRVL----KIGGKACLIG 215 (340)
T ss_pred Ch------hhhCC----------------CHHHHHHHHHHhc----CCCcEEEEEE
Confidence 21 11000 1123688888887 9999998753
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=7.7e-08 Score=93.07 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=81.7
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
..+.+|||+|||+|..+..++... ..++++|+++.+++.++.++...++.++.+...|+..++... .+.||+|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG-AKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-CCCccEEEeh
Confidence 357899999999999998887642 469999999999999999999888767888888887664322 3689999873
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
-. +. .......+|..+.++| +|||.++.++|.
T Consensus 120 ~~---------------------l~-~~~~~~~~l~~~~~~L----~~gG~l~i~~~~ 151 (224)
T TIGR01983 120 EV---------------------LE-HVPDPQAFIRACAQLL----KPGGILFFSTIN 151 (224)
T ss_pred hH---------------------HH-hCCCHHHHHHHHHHhc----CCCcEEEEEecC
Confidence 21 00 1111234677777776 999999988874
No 140
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.80 E-value=6e-08 Score=99.84 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=66.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCce-EEEE-ecCCCCCccc--cCCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNELPKV--LGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~l~~~--~~~~~FD~ 252 (496)
++.+|||+|||+|+....|+....+ ..++|+|+++..++.++.|++.+ ++.+ |.+. +.|...+... ...+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 5789999999999999998887653 68999999999999999999999 7864 6664 3444333221 12368999
Q ss_pred EEECCCCCCCC
Q 011002 253 VLLDAPCSGTG 263 (496)
Q Consensus 253 VLlDpPCSg~G 263 (496)
|+||||+-.++
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99999987654
No 141
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.80 E-value=2e-08 Score=97.22 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=77.7
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
..+.+|||+|||+|..+.+++.... ...|+++|+++.++..++.++. .++.++.+|...++. ..+.||+|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--EDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--CCCceeEEEEh
Confidence 3457899999999999999998865 3679999999999988887654 367788899887653 34789999985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
-.+... . ....+|..+.++| +|||.|++++-
T Consensus 106 ~~l~~~---------------------~-~~~~~l~~~~~~L----~~~G~l~~~~~ 136 (240)
T TIGR02072 106 LALQWC---------------------D-DLSQALSELARVL----KPGGLLAFSTF 136 (240)
T ss_pred hhhhhc---------------------c-CHHHHHHHHHHHc----CCCcEEEEEeC
Confidence 331100 0 1124577777776 99999998753
No 142
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.77 E-value=1.6e-08 Score=102.90 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=77.3
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC--C
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL--N 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~--~ 248 (496)
+.+|.+++|..+||++||.||.|..|+..+++.|.|+|+|.++.+++.+++++.. ..++.++++|..++...... .
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCC
Confidence 4567788999999999999999999999987679999999999999999998876 46799999999887554422 2
Q ss_pred CCCEEEECCCCCCC
Q 011002 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~FD~VLlDpPCSg~ 262 (496)
.||.|++|--||..
T Consensus 90 ~vDgIl~DLGvSs~ 103 (296)
T PRK00050 90 KVDGILLDLGVSSP 103 (296)
T ss_pred ccCEEEECCCcccc
Confidence 79999999988865
No 143
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.9e-08 Score=107.05 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=86.2
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC-ccccCC--C
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGL--N 248 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l-~~~~~~--~ 248 (496)
..++...+..+||+|||+|.+++.+|+.. +.|++++++++.+..++.|++.+|++|..++++-+.++ +..+.. .
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCC
Confidence 44567788999999999999999888754 68999999999999999999999999999999955544 322211 2
Q ss_pred CCC-EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 249 TVD-RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 249 ~FD-~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
+-+ ++++|||-.|.-. .+..+++.. +.--+|||.+|..+.
T Consensus 454 ~~~~v~iiDPpR~Glh~-------------------------~~ik~l~~~----~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLHM-------------------------KVIKALRAY----KNPRRLVYVSCNPHT 494 (534)
T ss_pred CCceEEEECCCcccccH-------------------------HHHHHHHhc----cCccceEEEEcCHHH
Confidence 445 8899999766531 123333332 434689999999865
No 144
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.77 E-value=6.5e-08 Score=104.55 Aligned_cols=120 Identities=19% Similarity=0.137 Sum_probs=83.6
Q ss_pred hhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC
Q 011002 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~ 247 (496)
..+...+.+.++.+|||+|||+|..+..++... +.|+|+|+++.+++.++... ....++.++++|+......++.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCC
Confidence 344555666678899999999999999999863 58999999999998754421 1246788999998643222334
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
+.||+|++..++.-. +..+ ...+|..+.+.| +|||+|++...++.
T Consensus 102 ~~fD~I~~~~~l~~l-------------~~~~-------~~~~l~~~~r~L----k~gG~l~~~d~~~~ 146 (475)
T PLN02336 102 GSVDLIFSNWLLMYL-------------SDKE-------VENLAERMVKWL----KVGGYIFFRESCFH 146 (475)
T ss_pred CCEEEEehhhhHHhC-------------CHHH-------HHHHHHHHHHhc----CCCeEEEEEeccCC
Confidence 789999986542111 1111 245677777776 99999988765544
No 145
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.75 E-value=9.8e-08 Score=92.55 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
+.++.+|||+|||+|..+..++.. ...|+|+|+++.++..+++++...+. .++.+...|+..++ +.||+|+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii 124 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVV 124 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEE
Confidence 457899999999999999999874 25899999999999999999988876 46899999987654 5799998
Q ss_pred E
Q 011002 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 125 ~ 125 (219)
T TIGR02021 125 C 125 (219)
T ss_pred E
Confidence 6
No 146
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.74 E-value=4.1e-08 Score=96.96 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=75.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce------EEEEecCCCCCccccCCCC
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN------TIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n------v~v~~~D~~~l~~~~~~~~ 249 (496)
+-.|.+|||+|||.|-.|.+||.+- ..|+|+|+++.+++.+++.....-+.+ +.+.+.|+..+. +.
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~ 158 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GK 158 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cc
Confidence 3447889999999999999999873 689999999999999999833322221 334445554432 56
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
||.|+| .++.+....-.+++...+.+| +|||.|+.+|-
T Consensus 159 fDaVvc----------------------sevleHV~dp~~~l~~l~~~l----kP~G~lfitti 196 (282)
T KOG1270|consen 159 FDAVVC----------------------SEVLEHVKDPQEFLNCLSALL----KPNGRLFITTI 196 (282)
T ss_pred cceeee----------------------HHHHHHHhCHHHHHHHHHHHh----CCCCceEeeeh
Confidence 999997 233333333455778878876 99999999874
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=3.3e-08 Score=95.02 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=93.2
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC-ccccCCCCCCEEEECC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l-~~~~~~~~FD~VLlDp 257 (496)
...+||+|||.|...+.+|...++ ..++|+|+...++..+...+.+.+++|+.++++|+..+ ...++++++|.|.+.=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 448999999999999999998764 78999999999999999999999999999999999884 4444458999999876
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH---h--CC
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK---K--RD 332 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~---~--~~ 332 (496)
| ||..+....... -.+..+|....+.| +|||.|.+.| .++....++++ . ..
T Consensus 97 P---------DPWpK~rH~krR-----l~~~~fl~~~~~~L----~~gG~l~~~T------D~~~y~~~~~~~~~~~~~~ 152 (195)
T PF02390_consen 97 P---------DPWPKKRHHKRR-----LVNPEFLELLARVL----KPGGELYFAT------DVEEYAEWMLEQFEESHPG 152 (195)
T ss_dssp --------------SGGGGGGS-----TTSHHHHHHHHHHE----EEEEEEEEEE------S-HHHHHHHHHHHHHHSTT
T ss_pred C---------CCCcccchhhhh-----cCCchHHHHHHHHc----CCCCEEEEEe------CCHHHHHHHHHHHHhcCcC
Confidence 6 343322111111 12455677777776 9999998776 45555555443 2 35
Q ss_pred cEEe
Q 011002 333 VKLV 336 (496)
Q Consensus 333 ~~lv 336 (496)
++.+
T Consensus 153 f~~~ 156 (195)
T PF02390_consen 153 FENI 156 (195)
T ss_dssp EEEE
T ss_pred eEEc
Confidence 6655
No 148
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.74 E-value=3e-08 Score=101.09 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=78.9
Q ss_pred EEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCC
Q 011002 160 YMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDG 238 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g-~~nv~v~~~D~ 238 (496)
|+++.......+..+.+.++++|||+|||+|..|..++... +.|+|+|+|+.+++.+++++...+ ..++.++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 43333333445666778899999999999999999998763 579999999999999999998877 46799999999
Q ss_pred CCCccccCCCCCCEEEECCCCCCCC
Q 011002 239 NELPKVLGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 239 ~~l~~~~~~~~FD~VLlDpPCSg~G 263 (496)
..++ + ..||.|+.|+|+..+.
T Consensus 95 l~~~--~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTE--F--PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhc--c--cccCEEEecCCcccCc
Confidence 7754 2 4699999999987653
No 149
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.73 E-value=1.7e-09 Score=91.40 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=60.4
Q ss_pred eecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCCC
Q 011002 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 183 LDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~ 262 (496)
||+|||+|..+..++...+ ...++++|+|+.+++.+++++...+..+...+..+..+.......+.||.|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~------ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS------ 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE------
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh------
Confidence 7999999999999999874 489999999999999999999998876655555554444322222589999971
Q ss_pred CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEE
Q 011002 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYI 308 (496)
Q Consensus 263 Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~L 308 (496)
+++. .+ .....+|.++.++| +|||.|
T Consensus 74 ~vl~---------------~l-~~~~~~l~~~~~~L----~pgG~l 99 (99)
T PF08242_consen 74 NVLH---------------HL-EDIEAVLRNIYRLL----KPGGIL 99 (99)
T ss_dssp -TTS------------------S-HHHHHHHHTTT-----TSS-EE
T ss_pred hhHh---------------hh-hhHHHHHHHHHHHc----CCCCCC
Confidence 2211 01 11235677777776 999986
No 150
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.73 E-value=9.9e-08 Score=95.80 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCeEeecccCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH----cC-----------------
Q 011002 177 QEKERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTANLHR----MG----------------- 227 (496)
Q Consensus 177 ~~g~~VLDlcAGpGg----ktl~lA~l~~~----~g~V~AvDis~~rl~~l~~nl~r----~g----------------- 227 (496)
.++.+|||+|||+|. .++.+++.++. ...|+|+|+|+.+++.+++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 55566665542 46899999999999999875310 01
Q ss_pred -----C-ceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHH-HHHHHHHHHHHHHhhhh
Q 011002 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC-SYLQKQLILAAIDMVDA 300 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l-~~lQ~~LL~~A~~~L~~ 300 (496)
+ .+|.+..+|....+. ..+.||+|+| .. + +..+ ...+.+++....+.|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~c----rn--v---------------l~yf~~~~~~~~l~~l~~~L-- 232 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP--PLGDFDLIFC----RN--V---------------LIYFDEPTQRKLLNRFAEAL-- 232 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC--ccCCCCEEEe----ch--h---------------HHhCCHHHHHHHHHHHHHHh--
Confidence 1 257888899887653 2378999997 11 1 1111 134567888888887
Q ss_pred cCCCCcEEEEEeCC
Q 011002 301 NSKSGGYIVYSTCS 314 (496)
Q Consensus 301 ~lkpGG~LVYSTCS 314 (496)
+|||+|+....-
T Consensus 233 --~pGG~L~lg~~E 244 (264)
T smart00138 233 --KPGGYLFLGHSE 244 (264)
T ss_pred --CCCeEEEEECcc
Confidence 999999986543
No 151
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.72 E-value=6.4e-08 Score=92.39 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=77.7
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
+...+|.-..-.++||+|||.|..|..||... ..|+|+|+++..++.+++++.. ..+|.+...|...+ .+.+
T Consensus 34 ~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~---~P~~ 105 (201)
T PF05401_consen 34 TLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF---WPEG 105 (201)
T ss_dssp HHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT------SS
T ss_pred HHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC---CCCC
Confidence 33344655666899999999999999999875 5799999999999999999875 47899999998665 3458
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCH-HHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSL-EDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~-~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
.||+|++ |.. .+-++. .++ ..++......| .|||.||..+-
T Consensus 106 ~FDLIV~----SEV---------lYYL~~~~~L-------~~~l~~l~~~L----~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVL----SEV---------LYYLDDAEDL-------RAALDRLVAAL----APGGHLVFGHA 147 (201)
T ss_dssp -EEEEEE----ES----------GGGSSSHHHH-------HHHHHHHHHTE----EEEEEEEEEEE
T ss_pred CeeEEEE----ehH---------hHcCCCHHHH-------HHHHHHHHHHh----CCCCEEEEEEe
Confidence 9999997 333 333332 232 23455555665 99999999654
No 152
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.71 E-value=4.5e-08 Score=97.81 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=75.9
Q ss_pred eEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC
Q 011002 159 FYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG 238 (496)
Q Consensus 159 ~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~ 238 (496)
+|.+........+..+++.++++|||+|||+|..|..++... ..|+|+|+++.+++.+++++.. ..++.++++|+
T Consensus 10 nfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~ 84 (258)
T PRK14896 10 HFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDA 84 (258)
T ss_pred cccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEecc
Confidence 344433334455666778889999999999999999999872 5899999999999999988865 46799999999
Q ss_pred CCCccccCCCCCCEEEECCCCCC
Q 011002 239 NELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 239 ~~l~~~~~~~~FD~VLlDpPCSg 261 (496)
..++ + ..||.|+.++|+..
T Consensus 85 ~~~~--~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 85 LKVD--L--PEFNKVVSNLPYQI 103 (258)
T ss_pred ccCC--c--hhceEEEEcCCccc
Confidence 8765 2 45899999999854
No 153
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.69 E-value=3.3e-08 Score=93.06 Aligned_cols=123 Identities=24% Similarity=0.213 Sum_probs=73.2
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC------ccccC--C
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLG--L 247 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l------~~~~~--~ 247 (496)
+..+.+|||+||||||+|..+.+..+..+.|+|+|+.+. ....++..+.+|.... ...+. .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccc
Confidence 335699999999999999999998755689999999876 2224556666665432 11111 2
Q ss_pred CCCCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 011002 248 NTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 248 ~~FD~VLlDp--PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~ 325 (496)
..||+|++|. +|+|... .... ....+....|.-|+..| +|||.+|.-+... .+.+.++.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~----------~d~~---~~~~l~~~~l~~a~~~L----~~gG~~v~K~~~~--~~~~~~~~ 150 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRN----------IDEF---ISIRLILSQLLLALELL----KPGGTFVIKVFKG--PEIEELIY 150 (181)
T ss_dssp CSESEEEE-------SSHH----------SSHH---HHHHHHHHHHHHHHHHH----CTTEEEEEEESSS--TTSHHHHH
T ss_pred cCcceeccccccCCCCchh----------hHHH---HHHHHHHHHHHHHHhhh----cCCCEEEEEeccC--ccHHHHHH
Confidence 5899999997 4554321 1111 11233334455666666 9999988776553 23345554
Q ss_pred HHH
Q 011002 326 YAL 328 (496)
Q Consensus 326 ~~L 328 (496)
.+-
T Consensus 151 ~l~ 153 (181)
T PF01728_consen 151 LLK 153 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 154
>PRK00811 spermidine synthase; Provisional
Probab=98.69 E-value=1.8e-07 Score=94.84 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=87.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCCccccCCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
...+|||+|||.|+.+..++... +...|+++|+++..++.+++.+..++ -.++.++.+|+..+... ..+.||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 45799999999999999887652 34689999999999999999987653 24589999999876432 2368999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
|++|.+-- .| | ...+ ...+++..+.+.| +|||.++..+-+ +......+..+++
T Consensus 154 Ii~D~~dp-~~-----~-------~~~l-----~t~ef~~~~~~~L----~~gGvlv~~~~~--~~~~~~~~~~i~~ 206 (283)
T PRK00811 154 IIVDSTDP-VG-----P-------AEGL-----FTKEFYENCKRAL----KEDGIFVAQSGS--PFYQADEIKDMHR 206 (283)
T ss_pred EEECCCCC-CC-----c-------hhhh-----hHHHHHHHHHHhc----CCCcEEEEeCCC--cccCHHHHHHHHH
Confidence 99996410 11 0 0011 1245666667776 999998875433 2334445555444
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=2.1e-07 Score=96.86 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=82.3
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--H---HHcC--CceEEEEecCCCCCcccc
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--L---HRMG--VTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~n--l---~r~g--~~nv~v~~~D~~~l~~~~ 245 (496)
...+. ..+||++|+|.|+.+..+... .+...|+++|+++.+++.++.. + .+.+ -+++.++.+|+..+....
T Consensus 146 ~~h~~-PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 146 SKVID-PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred HhCCC-CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc
Confidence 33344 459999999999976666553 3346899999999999999962 2 2222 346999999998864322
Q ss_pred CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~ 325 (496)
.+.||+|++|+|= |... .... ....+++..+.+.| +|||++|.-..|. .....++.
T Consensus 224 -~~~YDVIIvDl~D---------P~~~---~~~~-----LyT~EFy~~~~~~L----kPgGV~V~Qs~sp--~~~~~~~~ 279 (374)
T PRK01581 224 -SSLYDVIIIDFPD---------PATE---LLST-----LYTSELFARIATFL----TEDGAFVCQSNSP--ADAPLVYW 279 (374)
T ss_pred -CCCccEEEEcCCC---------cccc---chhh-----hhHHHHHHHHHHhc----CCCcEEEEecCCh--hhhHHHHH
Confidence 3689999999762 1100 0000 11245667777776 9999987764433 34444433
No 156
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.68 E-value=7.3e-08 Score=96.87 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=58.5
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~--g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
..+.+|||+|||+|..+..++..++.. ..|+|+|+|+.+++.+.++. .++.+..+|+..+| +..+.||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp--~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLP--FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCC--CcCCceeEEE
Confidence 456789999999999999999876542 37999999999999887652 46778889988876 3347899998
Q ss_pred E
Q 011002 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.63 E-value=2.8e-08 Score=96.55 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=96.8
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEEecCCCCCccccCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--TNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~--~nv~v~~~D~~~l~~~~~~~ 248 (496)
+....++.|++|||.|.|-|..++..+.. +...|+.+|.++..|+.+.-|--.-++ .+|.++.+|+.++-+.++++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcc
Confidence 44456788999999999999998866654 334899999999999887766433333 25789999998887777788
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC----CcCCHHHH
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM----VTENEAVI 324 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~----~eENE~vV 324 (496)
+||.|+-|||-.+. .- .+. -.++..+.+++| +|||.|+--|-.-. --.-..-|
T Consensus 205 sfDaIiHDPPRfS~-------------Ag-eLY-----seefY~El~RiL----krgGrlFHYvG~Pg~ryrG~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPRFSL-------------AG-ELY-----SEEFYRELYRIL----KRGGRLFHYVGNPGKRYRGLDLPKGV 261 (287)
T ss_pred ccceEeeCCCccch-------------hh-hHh-----HHHHHHHHHHHc----CcCCcEEEEeCCCCcccccCChhHHH
Confidence 99999999994221 11 111 134566667776 99999875543322 11223344
Q ss_pred HHHHHhCCcEEee
Q 011002 325 DYALKKRDVKLVP 337 (496)
Q Consensus 325 ~~~L~~~~~~lv~ 337 (496)
..-|++-+|..|.
T Consensus 262 a~RLr~vGF~~v~ 274 (287)
T COG2521 262 AERLRRVGFEVVK 274 (287)
T ss_pred HHHHHhcCceeee
Confidence 4555555666554
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.63 E-value=4.8e-07 Score=91.03 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=86.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCCccccCCCCCCEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g----~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
.+.+||++|||.|+.+..++... ....|+++|+++..++.+++++..++ ..++.++..|+..+.... .+.||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEE
Confidence 34599999999999888777653 23689999999999999999886653 245788889987653222 3689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHH
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYAL 328 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L 328 (496)
++|++.. .+. . ..+ ...+.+..+.+.| +|||.++..++|.. -+...+..++
T Consensus 150 i~D~~~~-~~~-----~-------~~l-----~~~ef~~~~~~~L----~pgG~lv~~~~~~~--~~~~~~~~~~ 200 (270)
T TIGR00417 150 IVDSTDP-VGP-----A-------ETL-----FTKEFYELLKKAL----NEDGIFVAQSESPW--IQLELITDLK 200 (270)
T ss_pred EEeCCCC-CCc-----c-------cch-----hHHHHHHHHHHHh----CCCcEEEEcCCCcc--cCHHHHHHHH
Confidence 9998632 111 0 000 1134566677776 99999998877643 3345544433
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=93.32 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=97.6
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC-CCCEEEECCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN-TVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~-~FD~VLlDpP 258 (496)
..+||+|||.|...+++|..-++ ..++|+|+....+..+...+.+.|++|+.+++.|+..+...+... +.|.|.++=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999999765 589999999999999999999999999999999998875544444 9999998766
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 011002 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 259 CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~ 326 (496)
||.-+.+.....+ +|..+|....+.| +|||.|.+.| .++....+
T Consensus 129 ---------DPWpKkRH~KRRl-----~~~~fl~~~a~~L----k~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 129 ---------DPWPKKRHHKRRL-----TQPEFLKLYARKL----KPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred ---------CCCCCcccccccc-----CCHHHHHHHHHHc----cCCCEEEEEe------cCHHHHHH
Confidence 4544433222222 4566777777876 9999998877 56666666
No 160
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.62 E-value=1e-07 Score=91.75 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=79.4
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
.+.+-.+|.|+|||||..|-+|++..+. ..|+|+|.|++|++.+++.+ .++.+..+|.+.+.. ...+|+|+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p---~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP---EQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC---CCccchhh
Confidence 4556789999999999999999999875 89999999999999986553 578899999988743 26799999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.|+- +.|-++. -++|.+.+..| .|||.|..-
T Consensus 98 aNAv--------------lqWlpdH--------~~ll~rL~~~L----~Pgg~LAVQ 128 (257)
T COG4106 98 ANAV--------------LQWLPDH--------PELLPRLVSQL----APGGVLAVQ 128 (257)
T ss_pred hhhh--------------hhhcccc--------HHHHHHHHHhh----CCCceEEEE
Confidence 8763 2232222 34566666666 999999764
No 161
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.62 E-value=4.6e-07 Score=92.63 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCC---CE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTV---DR 252 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~F---D~ 252 (496)
.++.+|||+|||+|.+|..|++.+.....++++|+|+.+|+.+.+++..... -+|.++++|+....... ..+ +.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~--~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP--PEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh--cccccCCe
Confidence 4678999999999999999998875346899999999999999999876431 24677889987642211 222 33
Q ss_pred EEE--CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 011002 253 VLL--DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 253 VLl--DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~ 327 (496)
+++ +- ..|. ..+.+ ...+|..+.+.| +|||.++...=+ ..+.+++..+
T Consensus 140 ~~~~~gs---~~~~----------~~~~e-------~~~~L~~i~~~L----~pgG~~lig~d~---~~~~~~~~~a 189 (301)
T TIGR03438 140 LGFFPGS---TIGN----------FTPEE-------AVAFLRRIRQLL----GPGGGLLIGVDL---VKDPAVLEAA 189 (301)
T ss_pred EEEEecc---cccC----------CCHHH-------HHHHHHHHHHhc----CCCCEEEEeccC---CCCHHHHHHh
Confidence 332 21 1222 12222 245678877776 999999986433 3455555444
No 162
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=5.6e-07 Score=93.88 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=104.8
Q ss_pred CCCcccccceEEEecCcch---hH---HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCC--------------------
Q 011002 150 GATPEYMAGFYMLQSASSF---LP---VMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-------------------- 203 (496)
Q Consensus 150 ~~~~~~~~G~~~iQd~sS~---l~---v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~-------------------- 203 (496)
...+.++.||-.-+..+.. |+ +.+.+.+++..++|--||+|.+.+..|.+..+-
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 4447788898777776642 22 233356778899999999999998887765421
Q ss_pred -----------c-------EEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECCCCCCCCc
Q 011002 204 -----------G-------LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 204 -----------g-------~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gv 264 (496)
+ .++|+|+++.+++.++.|+.+.|+.. |.+.++|+..+...+ ..+|+|++|||+- .-+
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYG-eRl 313 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYG-ERL 313 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcc-hhc
Confidence 1 47899999999999999999999976 899999999987655 6899999999963 211
Q ss_pred ccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 265 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 265 i~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
- +. .....++..+...+-+.+ +--++.|++|-
T Consensus 314 g----------~~---~~v~~LY~~fg~~lk~~~----~~ws~~v~tt~ 345 (381)
T COG0116 314 G----------SE---ALVAKLYREFGRTLKRLL----AGWSRYVFTTS 345 (381)
T ss_pred C----------Ch---hhHHHHHHHHHHHHHHHh----cCCceEEEEcc
Confidence 0 11 223345666666666665 66667777653
No 163
>PRK10742 putative methyltransferase; Provisional
Probab=98.61 E-value=3.8e-07 Score=90.26 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=76.6
Q ss_pred chhHHHhcCCCCCC--eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc------CC---ceEEEEe
Q 011002 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM------GV---TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g~--~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~------g~---~nv~v~~ 235 (496)
...++.++++++|. +|||++||.|.-++.++.+ ++.|+++|.++.....++.++++. +. .++.+++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35678889989988 9999999999999999987 357999999999999999999996 42 5689999
Q ss_pred cCCCCCccccCCCCCCEEEECCCCCC
Q 011002 236 YDGNELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 236 ~D~~~l~~~~~~~~FD~VLlDpPCSg 261 (496)
+|+..+..... ..||+|++|||+-.
T Consensus 152 ~da~~~L~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCC-CCCcEEEECCCCCC
Confidence 99877644332 47999999999753
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.61 E-value=8.5e-08 Score=96.61 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=69.7
Q ss_pred hHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 169 LPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 169 l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
..+..+++.++++|||+|||+|..|..++... ..|+|+|+++.+++.+++++.. .++.++++|+..++... -
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~--~ 104 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE--L 104 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH--c
Confidence 34556677889999999999999999999874 3799999999999999987743 57999999998875211 1
Q ss_pred CCCEEEECCCCCCC
Q 011002 249 TVDRVLLDAPCSGT 262 (496)
Q Consensus 249 ~FD~VLlDpPCSg~ 262 (496)
.+|.|+.|+|+.-+
T Consensus 105 ~~~~vv~NlPY~is 118 (272)
T PRK00274 105 QPLKVVANLPYNIT 118 (272)
T ss_pred CcceEEEeCCccch
Confidence 15999999998543
No 165
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.58 E-value=4.5e-07 Score=88.21 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=96.5
Q ss_pred cchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCC-cc
Q 011002 166 SSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PK 243 (496)
Q Consensus 166 sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l-~~ 243 (496)
-.++..+++..-...++||+|.-+|.-++..|..++.+|+|+++|+++...+...+-.+..|+.. |.++.+++.+- ++
T Consensus 61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 34566666666667899999999999999999999999999999999999999999999999975 88999888653 11
Q ss_pred ---ccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 244 ---VLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 244 ---~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
....+.||.+|+|+= - ......+.+++++| |+||.|++-.-++
T Consensus 141 l~~~~~~~tfDfaFvDad-----------------K--------~nY~~y~e~~l~Ll----r~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDAD-----------------K--------DNYSNYYERLLRLL----RVGGVIVVDNVLW 186 (237)
T ss_pred HHhcCCCCceeEEEEccc-----------------h--------HHHHHHHHHHHhhc----ccccEEEEecccc
Confidence 123478999999972 1 11124578888987 9999999976544
No 166
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.56 E-value=7.2e-07 Score=86.92 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=74.3
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGNEL 241 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~---------------~nv~v~~~D~~~l 241 (496)
.++.+|||+|||.|.-+.+||+. +-.|+|+|+|+..++.+.. ..|+ .+|.+.++|...+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57789999999999999999975 2489999999999997643 2222 2578889999887
Q ss_pred ccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
+... .+.||.|+--.- +- ...+ ......+....++| +|||++++.|-+.
T Consensus 107 ~~~~-~~~fD~i~D~~~------~~-------~l~~-------~~R~~~~~~l~~lL----kpgG~~ll~~~~~ 155 (213)
T TIGR03840 107 TAAD-LGPVDAVYDRAA------LI-------ALPE-------EMRQRYAAHLLALL----PPGARQLLITLDY 155 (213)
T ss_pred Cccc-CCCcCEEEechh------hc-------cCCH-------HHHHHHHHHHHHHc----CCCCeEEEEEEEc
Confidence 5321 257999864111 00 0111 11233566666766 9999988877665
No 167
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.54 E-value=3.7e-07 Score=85.81 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=80.9
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
.+|||+|||.|..-..|+.-- =.+.++++|.++.+++.++..+++.|++| |.+.+.|..... +..+.||+|+=---
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--FLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc--ccccceeEEeecCc
Confidence 399999999998887777653 23579999999999999999999999998 999999988752 22478888862110
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC
Q 011002 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319 (496)
Q Consensus 259 CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eE 319 (496)
. -.|+-+|+-.-.+- .-.+...-++ |+|||++|..+|-++..|
T Consensus 146 ~---DAisLs~d~~~~r~-----------~~Y~d~v~~l----l~~~gifvItSCN~T~dE 188 (227)
T KOG1271|consen 146 L---DAISLSPDGPVGRL-----------VVYLDSVEKL----LSPGGIFVITSCNFTKDE 188 (227)
T ss_pred e---eeeecCCCCcccce-----------eeehhhHhhc----cCCCcEEEEEecCccHHH
Confidence 0 01111221111110 0012223333 499999999999998654
No 168
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.54 E-value=7.8e-07 Score=86.03 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
..++.+|||+|||+|..+..++..+++ +.|+|+|+|+.+++.+++++ .++.+.++|+.. + +..++||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~--~~~~sfD~V~~ 111 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-P--FKDNFFDLVLT 111 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-C--CCCCCEEEEEE
Confidence 456789999999999999999887643 78999999999999998764 345677788766 3 33478999997
No 169
>PRK03612 spermidine synthase; Provisional
Probab=98.52 E-value=5.7e-07 Score=98.64 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=82.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHc-----CCceEEEEecCCCCCccccCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTAN--LHRM-----GVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~n--l~r~-----g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
.++.+|||+|+|.|+.+..+++. +....|+++|+|+..++.++++ +... .-+++.++.+|++.+.... .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 34679999999999999888764 3236999999999999999984 3322 1246899999998764322 368
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
||+|++|+|... + |.. .. -...+++..+.+.| +|||.++..++|..
T Consensus 374 fDvIi~D~~~~~-~-----~~~------~~-----L~t~ef~~~~~~~L----~pgG~lv~~~~~~~ 419 (521)
T PRK03612 374 FDVIIVDLPDPS-N-----PAL------GK-----LYSVEFYRLLKRRL----APDGLLVVQSTSPY 419 (521)
T ss_pred CCEEEEeCCCCC-C-----cch------hc-----cchHHHHHHHHHhc----CCCeEEEEecCCcc
Confidence 999999987321 0 110 00 01144566677776 99999998877643
No 170
>PLN02366 spermidine synthase
Probab=98.51 E-value=1.2e-06 Score=89.92 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--ceEEEEecCCCCCccccCCCCCCEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g--~--~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
...+||++|+|.|+.+..++.. ++...|+.+|+++..++.+++.+...+ + +++.++.+|+..+......+.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4679999999999999888765 344689999999999999999886643 3 3599999999776432223689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
++|.+-. .| | ... -...+++..+.+.| +|||.|+.-
T Consensus 170 i~D~~dp-~~-----~-------~~~-----L~t~ef~~~~~~~L----~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDP-VG-----P-------AQE-----LFEKPFFESVARAL----RPGGVVCTQ 205 (308)
T ss_pred EEcCCCC-CC-----c-------hhh-----hhHHHHHHHHHHhc----CCCcEEEEC
Confidence 9997521 11 0 000 11245677777776 999998753
No 171
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.51 E-value=9.6e-07 Score=90.93 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=57.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-----CceEEEEecCCCCCccccCCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-----VTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g-----~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
+|.+|||+|||+|..+..++.. ...|+|+|+|+.+++.+++++...+ ..++.+...|...+ .+.||+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999999875 2589999999999999999988763 23577778887543 268999
Q ss_pred EEE
Q 011002 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
|++
T Consensus 216 Vv~ 218 (315)
T PLN02585 216 VTC 218 (315)
T ss_pred EEE
Confidence 986
No 172
>PRK06202 hypothetical protein; Provisional
Probab=98.50 E-value=5e-07 Score=88.47 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=58.1
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCC
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~---~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~ 249 (496)
.+...++.+|||+|||+|..+..|+..+.. ...|+|+|+++.+++.++.+....++ .+...|+..++. ..+.
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV---TFRQAVSDELVA--EGER 129 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC---eEEEEecccccc--cCCC
Confidence 334456789999999999999998876532 24899999999999999887655443 344445444443 2378
Q ss_pred CCEEEEC
Q 011002 250 VDRVLLD 256 (496)
Q Consensus 250 FD~VLlD 256 (496)
||+|++.
T Consensus 130 fD~V~~~ 136 (232)
T PRK06202 130 FDVVTSN 136 (232)
T ss_pred ccEEEEC
Confidence 9999983
No 173
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.49 E-value=1.7e-06 Score=98.04 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCCCcccccceEEEecCcch---hHHHhc---CC-CCCCeEeecccCCcHHHHHHHHHcC--------------------
Q 011002 149 IGATPEYMAGFYMLQSASSF---LPVMAL---AP-QEKERVIDMAAAPGGKTTYIAALMK-------------------- 201 (496)
Q Consensus 149 i~~~~~~~~G~~~iQd~sS~---l~v~~L---~~-~~g~~VLDlcAGpGgktl~lA~l~~-------------------- 201 (496)
....+.++.||-..+.++.+ +++.+| .. .++..++|-+||+|.+.+..|.+..
T Consensus 154 ~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~ 233 (702)
T PRK11783 154 LSGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHD 233 (702)
T ss_pred CCCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCC
Confidence 34456777887666665542 222222 23 5689999999999999887765421
Q ss_pred ---------------------CCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECCCC
Q 011002 202 ---------------------NTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 202 ---------------------~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpPC 259 (496)
....|+|+|+++.+++.++.|+..+|+.+ |.+.++|+..++.....+.||+|++|||+
T Consensus 234 ~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 234 EALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 11369999999999999999999999976 88999999887644333579999999997
Q ss_pred C
Q 011002 260 S 260 (496)
Q Consensus 260 S 260 (496)
-
T Consensus 314 g 314 (702)
T PRK11783 314 G 314 (702)
T ss_pred c
Confidence 4
No 174
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.47 E-value=1.9e-06 Score=84.31 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=73.3
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC---------------ceEEEEecCCC
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------TNTIVCNYDGN 239 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~---------------~nv~v~~~D~~ 239 (496)
.+.++.+|||+|||.|.-+.+||+. +-.|+|+|+|+..++.+.. +.|+ .+|.+.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999974 3589999999999998642 2222 35788899998
Q ss_pred CCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS-YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 240 ~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~-~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.++... ...||.|+-= ++ +..+. ....+.+....++| +|||++++.|-..
T Consensus 108 ~l~~~~-~~~fd~v~D~------~~---------------~~~l~~~~R~~~~~~l~~lL----~pgG~~~l~~~~~ 158 (218)
T PRK13255 108 ALTAAD-LADVDAVYDR------AA---------------LIALPEEMRERYVQQLAALL----PAGCRGLLVTLDY 158 (218)
T ss_pred CCCccc-CCCeeEEEeh------Hh---------------HhhCCHHHHHHHHHHHHHHc----CCCCeEEEEEEEe
Confidence 874321 2578988730 00 11111 12234566666665 9999766554444
No 175
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.47 E-value=3.9e-07 Score=88.28 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=85.3
Q ss_pred CeEeecccCCcHHHHHHHHHcCC----Cc----EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc------ccc
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKN----TG----LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP------KVL 245 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~----~g----~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~------~~~ 245 (496)
.+|+|+||+||.++..+++.+-. .+ .|+|+|+.+- ..+..|..+++|.+... ..+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 68999999999999999986633 22 3999999762 24567888899988642 335
Q ss_pred CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~ 325 (496)
..+..|+|+||-.---+|+ +++.+ ..|.+||.+|+.+...+|+|||.+|- -++..++-..+-
T Consensus 112 ggekAdlVvcDGAPDvTGl-------------Hd~DE--y~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-------------HDLDE--YVQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred CCCCccEEEeCCCCCcccc-------------ccHHH--HHHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 5678999999955444443 23333 35788899999988888999999974 355555555444
No 176
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.47 E-value=1.7e-07 Score=85.04 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=70.3
Q ss_pred HHHhcC-CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 170 PVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 170 ~v~~L~-~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
+..++. ..++.+|||+|||.|..+..++... ..|+++|+++.+++. .++.....+....+. ..+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~--~~~ 77 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF--PDG 77 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH----------TTSEEEEEECHTHHC--HSS
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc--ccc
Confidence 333443 4678999999999999999886652 389999999999987 233333333332221 237
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.||+|++. .++..-+ ....+|....++| +|||+|+.++-..
T Consensus 78 ~fD~i~~~------~~l~~~~----------------d~~~~l~~l~~~L----kpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICN------DVLEHLP----------------DPEEFLKELSRLL----KPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEE------SSGGGSS----------------HHHHHHHHHHHCE----EEEEEEEEEEEBT
T ss_pred chhhHhhH------HHHhhcc----------------cHHHHHHHHHHhc----CCCCEEEEEEcCC
Confidence 89999982 2221111 1234677777776 9999999988654
No 177
>PRK05785 hypothetical protein; Provisional
Probab=98.46 E-value=6.3e-07 Score=87.94 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=54.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
++.+|||+|||+|..+.+++... .+.|+|+|+|+.+++.++... ..+++|+..+| ++.++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp--~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALP--FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCC--CCCCCEEEEEe
Confidence 47899999999999999998875 368999999999999887531 24578888776 34589999997
No 178
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.46 E-value=2.2e-06 Score=83.18 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.++.+|||+|||+|..+..++... ..|+++|+++.+++.+++++...+. .++.+..+|... . .+.||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---L--LGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---c--cCCcCEEEE
Confidence 567899999999999999888752 4699999999999999999998887 468888888432 1 267999987
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.45 E-value=1.7e-06 Score=94.50 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
..+..+||+|||.|..++.+|...++ ..++|+|++...+..+...+.+.|+.|+.+++.|+..+...++.+++|.|.+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 45788999999999999999998765 68999999999999999999999999999998888666555666789999987
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
=| ||.-+.......+ .|..+|....+.| +|||.|.+.|
T Consensus 425 FP---------DPWpKkrh~krRl-----~~~~fl~~~~~~L----k~gG~i~~~T 462 (506)
T PRK01544 425 FP---------DPWIKNKQKKKRI-----FNKERLKILQDKL----KDNGNLVFAS 462 (506)
T ss_pred CC---------CCCCCCCCccccc-----cCHHHHHHHHHhc----CCCCEEEEEc
Confidence 66 4443322222221 3445566666766 9999998876
No 180
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4e-06 Score=80.13 Aligned_cols=141 Identities=24% Similarity=0.302 Sum_probs=101.0
Q ss_pred cchhHHHhcC------CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 166 SSFLPVMALA------PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 166 sS~l~v~~L~------~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
-|-|++..|. +.+|.+||=|||++|....|++...+ .|.|+|++.++.....|...+.+- .|+..+.+|++
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~ 134 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDAR 134 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCceeeecccC
Confidence 4666666653 57899999999999999999999998 699999999999998888887763 68999999998
Q ss_pred CCcccc-CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHH-HHHHHhhhhcCCCCcEEEEE--eCCC
Q 011002 240 ELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLI-LAAIDMVDANSKSGGYIVYS--TCSI 315 (496)
Q Consensus 240 ~l~~~~-~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL-~~A~~~L~~~lkpGG~LVYS--TCSl 315 (496)
...... --+.+|+|+.|.. ...|.+|+ .+|-.+| ++||+++.+ .-|+
T Consensus 135 ~P~~Y~~~Ve~VDviy~DVA-------------------------Qp~Qa~I~~~Na~~FL----k~~G~~~i~iKArSI 185 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDVA-------------------------QPNQAEILADNAEFFL----KKGGYVVIAIKARSI 185 (231)
T ss_pred CcHHhhhhcccccEEEEecC-------------------------CchHHHHHHHHHHHhc----ccCCeEEEEEEeecc
Confidence 643211 0157999999874 13355544 4555554 999965544 6666
Q ss_pred CCc-CCHHHHHHHHH---hCCcEEeec
Q 011002 316 MVT-ENEAVIDYALK---KRDVKLVPC 338 (496)
Q Consensus 316 ~~e-ENE~vV~~~L~---~~~~~lv~~ 338 (496)
... +.++|...-++ ..+|++.+.
T Consensus 186 dvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 186 DVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred cccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 655 44555554443 346666553
No 181
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=3.5e-06 Score=79.61 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEec-CCCCCc------cccCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY-DGNELP------KVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~-D~~~l~------~~~~~~~ 249 (496)
.|+++|||+|||||.++...-++.++.|.|+++|+-. -..+..+.++.+ |.++.. ..+++..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998889999999853 122334445544 665521 2234578
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
+|+||.|.---.+|+- ..|-..+..+-...|.-|+.++ .|+|.+|.=+ |...|.......+..
T Consensus 137 VdvVlSDMapnaTGvr-----------~~Dh~~~i~LC~s~l~~al~~~----~p~g~fvcK~--w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVR-----------IRDHYRSIELCDSALLFALTLL----IPNGSFVCKL--WDGSEEALLQRRLQA 199 (232)
T ss_pred ccEEEeccCCCCcCcc-----------hhhHHHHHHHHHHHHHHhhhhc----CCCcEEEEEE--ecCCchHHHHHHHHH
Confidence 9999999766777752 2233334455556677777776 8999998543 333333334344443
Q ss_pred hC-CcEEee
Q 011002 330 KR-DVKLVP 337 (496)
Q Consensus 330 ~~-~~~lv~ 337 (496)
.+ .++.+.
T Consensus 200 ~f~~Vk~vK 208 (232)
T KOG4589|consen 200 VFTNVKKVK 208 (232)
T ss_pred HhhhcEeeC
Confidence 33 455443
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.42 E-value=5.8e-07 Score=89.46 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=68.7
Q ss_pred hhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC
Q 011002 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~ 247 (496)
...+..+++.++++|||+|||+|..|..|+.... .|+++|+++.+++.++.++.. ..++.++++|+..++.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~---- 89 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL---- 89 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh----
Confidence 3445566778899999999999999999998753 599999999999999987743 4678999999988763
Q ss_pred CCCC---EEEECCCCC
Q 011002 248 NTVD---RVLLDAPCS 260 (496)
Q Consensus 248 ~~FD---~VLlDpPCS 260 (496)
..|| .|+.++|+.
T Consensus 90 ~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 PDFPKQLKVVSNLPYN 105 (253)
T ss_pred hHcCCcceEEEcCChh
Confidence 2466 999999953
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.8e-07 Score=82.84 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
-+|..++|+|||.|..++ +..|.....|+++||++..|+...+|+..+.+. +.+++.|..++... .+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~~--~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLELK--GGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhcc--CCeEeeEEec
Confidence 478999999999999884 333444478999999999999999999999874 57888888776432 3899999999
Q ss_pred CC
Q 011002 257 AP 258 (496)
Q Consensus 257 pP 258 (496)
||
T Consensus 122 pp 123 (185)
T KOG3420|consen 122 PP 123 (185)
T ss_pred CC
Confidence 99
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5.4e-06 Score=78.05 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=93.5
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
...+|++|||+|..++.+++...+....+|.|+|+.+++...+.+..+++. +.++..|...- +..++.|+++.|||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~---l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSG---LRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhh---hccCCccEEEECCC
Confidence 578999999999999999999887778999999999999999999998875 66677776443 23389999999999
Q ss_pred CCCCCc--c-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 011002 259 CSGTGV--I-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 259 CSg~Gv--i-~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~ 333 (496)
+--+-- + ...-...|.-. ..-+++....+..|+..|.|.|.++..+|.-+ -.++++. +++..++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG--------~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~p~ei~k-~l~~~g~ 186 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGG--------KDGREVTDRLLPQVPDILSPRGVFYLVALRAN--KPKEILK-ILEKKGY 186 (209)
T ss_pred cCcCCcccchhHHHHHHHhcC--------cchHHHHHHHHhhhhhhcCcCceEEeeehhhc--CHHHHHH-HHhhccc
Confidence 854421 0 00001112111 11222333333333333599999988877643 2334444 6776543
No 185
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.38 E-value=1.4e-06 Score=85.14 Aligned_cols=132 Identities=25% Similarity=0.262 Sum_probs=100.0
Q ss_pred chhHHHhc------CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC
Q 011002 167 SFLPVMAL------APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L------~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~ 240 (496)
|-|++-.+ .++||.+||=|||++|....|+++.+++.|.|||+|.+...=..|...+++- +||+.+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 45555544 3789999999999999999999999999999999999987666666555443 689999999987
Q ss_pred Cccc-cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHH-HHHHHHHhhhhcCCCCcEEEEE---eCCC
Q 011002 241 LPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQ-LILAAIDMVDANSKSGGYIVYS---TCSI 315 (496)
Q Consensus 241 l~~~-~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~-LL~~A~~~L~~~lkpGG~LVYS---TCSl 315 (496)
..+. +--.-+|+||.|.|- ..|.+ +..+|..+| |+||.+|.| .|+=
T Consensus 217 P~KYRmlVgmVDvIFaDvaq-------------------------pdq~RivaLNA~~FL----k~gGhfvisikancid 267 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVAQ-------------------------PDQARIVALNAQYFL----KNGGHFVISIKANCID 267 (317)
T ss_pred chheeeeeeeEEEEeccCCC-------------------------chhhhhhhhhhhhhh----ccCCeEEEEEeccccc
Confidence 5432 112468999999872 12222 345666666 999999876 7888
Q ss_pred CCcCCHHHHHHHHH
Q 011002 316 MVTENEAVIDYALK 329 (496)
Q Consensus 316 ~~eENE~vV~~~L~ 329 (496)
+...+|.|.+.-.+
T Consensus 268 stv~ae~vFa~Ev~ 281 (317)
T KOG1596|consen 268 STVFAEAVFAAEVK 281 (317)
T ss_pred ccccHHHHHHHHHH
Confidence 88899998875443
No 186
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.37 E-value=2.9e-06 Score=93.07 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---ccCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-------TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-------~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---~~~~ 247 (496)
.+.+|||.|||+|++.+.++..+.. .-.|+|+|+++..+..++.++..++.-.+.+.+.|...... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999998877632 13689999999999999999988873234455555432110 0012
Q ss_pred CCCCEEEECCCCCCCCc
Q 011002 248 NTVDRVLLDAPCSGTGV 264 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gv 264 (496)
+.||+|+.|||+.....
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 58999999999877643
No 187
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=2.5e-06 Score=83.60 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=78.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----c-----------------------
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-----T----------------------- 229 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-----~----------------------- 229 (496)
.+..+||+||-+|..|++||..++. ..|+++||++..++.++.++...-- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3568999999999999999999875 6799999999999999999865311 1
Q ss_pred --------------eEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHH
Q 011002 230 --------------NTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAI 295 (496)
Q Consensus 230 --------------nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~ 295 (496)
|.++...|.. .+....||+||| -|-+ -.+.++|..+.+ +.++..+.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl----~~~~~~fDiIlc---LSiT------kWIHLNwgD~GL-------~~ff~kis 196 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL----DMIQPEFDIILC---LSIT------KWIHLNWGDDGL-------RRFFRKIS 196 (288)
T ss_pred ccccCCcchhcccccEEEecchhh----hhccccccEEEE---EEee------eeEecccccHHH-------HHHHHHHH
Confidence 1111111111 122367999997 2222 234456766665 55688888
Q ss_pred HhhhhcCCCCcEEEEEeCCC
Q 011002 296 DMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 296 ~~L~~~lkpGG~LVYSTCSl 315 (496)
.+| .|||+||.--=-|
T Consensus 197 ~ll----~pgGiLvvEPQpW 212 (288)
T KOG2899|consen 197 SLL----HPGGILVVEPQPW 212 (288)
T ss_pred Hhh----CcCcEEEEcCCch
Confidence 887 9999999744333
No 188
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.33 E-value=3.9e-06 Score=80.01 Aligned_cols=71 Identities=21% Similarity=0.194 Sum_probs=55.8
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+.||.+|||+|||.|..-.+|.+.. ....+++|++++.+..+.+ .| +.++++|+..-...+++++||.|++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHhhCCCCCccEEeh
Confidence 4679999999999999888777752 3689999999998766544 34 4588888876544566789999997
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.2e-06 Score=81.24 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=70.8
Q ss_pred HHhcC--CCCCCeEeecccCCcHHHHHHHHHcCCCcEE-EEEeCCHHHHHHHHHHHHHcC----------CceEEEEecC
Q 011002 171 VMALA--PQEKERVIDMAAAPGGKTTYIAALMKNTGLI-YANEMKASRLKSLTANLHRMG----------VTNTIVCNYD 237 (496)
Q Consensus 171 v~~L~--~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V-~AvDis~~rl~~l~~nl~r~g----------~~nv~v~~~D 237 (496)
..+|. ++||...||+|+|+|..|..++.+++..|.+ +++|.-++.++..++|+...- ..++.++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 34555 7899999999999999999999888877764 999999999999999998753 1357788999
Q ss_pred CCCCccccCCCCCCEEEECCC
Q 011002 238 GNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDpP 258 (496)
++..-... ..||+|.|-|-
T Consensus 153 gr~g~~e~--a~YDaIhvGAa 171 (237)
T KOG1661|consen 153 GRKGYAEQ--APYDAIHVGAA 171 (237)
T ss_pred ccccCCcc--CCcceEEEccC
Confidence 99875433 78999999653
No 190
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.31 E-value=8e-06 Score=82.93 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=79.1
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCC
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD 251 (496)
.+.+-.|.+|||+|||.|..+..|+.. +...|+|+|.+..-+.....--+-+|... +..+..-...++. . +.||
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FD 184 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFD 184 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcC
Confidence 344557999999999999999888775 34589999999887766555445555544 3333233344554 3 7899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eEN 320 (496)
.||+ .||+-+. +++-+ .|....+.| ++||.||.=|--+..+++
T Consensus 185 tVF~------MGVLYHr------r~Pl~----------~L~~Lk~~L----~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 185 TVFS------MGVLYHR------RSPLD----------HLKQLKDSL----RPGGELVLETLVIDGDEN 227 (315)
T ss_pred EEEE------eeehhcc------CCHHH----------HHHHHHHhh----CCCCEEEEEEeeecCCCc
Confidence 9997 7887542 22222 244444554 999999998877655554
No 191
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.23 E-value=2.1e-06 Score=81.14 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=80.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
.+.+.|+|||+|-.+...|... -+|+|++.+|.+.+.+.+|++-.|..|+.++++|++++. + +..|+|+|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--f--e~ADvvicEm- 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--F--ENADVVICEM- 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--c--cccceeHHHH-
Confidence 3789999999999998877763 589999999999999999999999999999999999875 3 6789998721
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE
Q 011002 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 259 CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LV 309 (496)
-|-.-+-..|-..+.+++.+| +..|+++
T Consensus 105 -------------------lDTaLi~E~qVpV~n~vleFL----r~d~tii 132 (252)
T COG4076 105 -------------------LDTALIEEKQVPVINAVLEFL----RYDPTII 132 (252)
T ss_pred -------------------hhHHhhcccccHHHHHHHHHh----hcCCccc
Confidence 122233455777888888887 8877764
No 192
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.20 E-value=6.5e-06 Score=89.69 Aligned_cols=169 Identities=21% Similarity=0.218 Sum_probs=109.1
Q ss_pred ceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEE
Q 011002 158 GFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVT-NTIV 233 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~---~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v 233 (496)
|-|+-=..-+.+.+..|.|.+..+|+|-|||+||.-+..+..++. ...+++.|+++.....++-|+--.|+. ++.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 544333344677888899889999999999999999988888753 368999999999999999999999987 4566
Q ss_pred EecCCCCCcccc---CCCCCCEEEECCCCCCCCcccCCchhhccC--CHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCcE
Q 011002 234 CNYDGNELPKVL---GLNTVDRVLLDAPCSGTGVISKDESVKTSK--SLEDIQKCSYLQ-KQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 234 ~~~D~~~l~~~~---~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~--s~~~i~~l~~lQ-~~LL~~A~~~L~~~lkpGG~ 307 (496)
..+|...-|... ....||.|+.+||.|+.|.....-...+.+ ............ ...+.+.+..+ +|||+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l----~~~g~ 321 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL----KPGGR 321 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc----CCCce
Confidence 666665444331 236799999999999766443210000000 000000000011 34567777776 88763
Q ss_pred --EEEEeCCCCCcCCHHHHHHHHHh
Q 011002 308 --IVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 308 --LVYSTCSl~~eENE~vV~~~L~~ 330 (496)
+|...-.++..-++..|...|-.
T Consensus 322 aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 322 AAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEEEecCCcCcCCCchHHHHHHHHh
Confidence 33333344444568877755543
No 193
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=9.7e-06 Score=81.00 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=74.8
Q ss_pred hhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC
Q 011002 168 FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL 247 (496)
Q Consensus 168 ~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~ 247 (496)
.-.+.++++.+++.||++|+|.|+.|..|++.. ..|+|+|+|+..+..|++.+. ...|+.++++|+..++... .
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~-l 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPS-L 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchh-h
Confidence 445777888899999999999999999999874 579999999999999998876 4568999999998875320 0
Q ss_pred CCCCEEEECCCCCCCC
Q 011002 248 NTVDRVLLDAPCSGTG 263 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~G 263 (496)
..+++|+.|-||+-+.
T Consensus 94 ~~~~~vVaNlPY~Iss 109 (259)
T COG0030 94 AQPYKVVANLPYNISS 109 (259)
T ss_pred cCCCEEEEcCCCcccH
Confidence 1689999999997664
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.12 E-value=6e-06 Score=78.74 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=64.2
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccC
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~ 246 (496)
|..++..+... +.+|+|+|+|.|-=++.+|-..+ ...|+.+|.+..++.-++.-+..+|++|+.+++..+.. +. .
T Consensus 38 SL~~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~--~ 112 (184)
T PF02527_consen 38 SLALLPFLPDF-GKKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE--Y 112 (184)
T ss_dssp HHGGGGCS-CC-CSEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT--T
T ss_pred HHHhhhhhccC-CceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc--c
Confidence 44444444332 22899999999999999888775 47899999999999999999999999999999998876 11 2
Q ss_pred CCCCCEEEE
Q 011002 247 LNTVDRVLL 255 (496)
Q Consensus 247 ~~~FD~VLl 255 (496)
...||.|++
T Consensus 113 ~~~fd~v~a 121 (184)
T PF02527_consen 113 RESFDVVTA 121 (184)
T ss_dssp TT-EEEEEE
T ss_pred CCCccEEEe
Confidence 378999987
No 195
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.09 E-value=1e-05 Score=82.82 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc---CC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---GL 247 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~---~~ 247 (496)
+.+|.+++|..++|+-+|-||-|..|+..+++ |.|+|+|.++.+++.+++++..++ .++.+++++..++...+ ..
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCC
Confidence 45677889999999999999999999998876 999999999999999999988763 46889999888765433 23
Q ss_pred CCCCEEEECCCCCCC
Q 011002 248 NTVDRVLLDAPCSGT 262 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~ 262 (496)
..||.|++|--+|..
T Consensus 91 ~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 91 TKIDGILVDLGVSSP 105 (305)
T ss_pred CcccEEEEeccCCHh
Confidence 579999999877753
No 196
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.08 E-value=2e-05 Score=77.61 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=76.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC-ccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l-~~~~~~~~FD~VLl 255 (496)
-.|.+||=+| -+-.+...+.+.+....|+.+|++...++.+.+.+.+.|++ |....+|.+.. |..+ .++||+++.
T Consensus 43 L~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~-~~~fD~f~T 118 (243)
T PF01861_consen 43 LEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL-RGKFDVFFT 118 (243)
T ss_dssp STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT-SS-BSEEEE
T ss_pred ccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH-hcCCCEEEe
Confidence 3588897554 66555555555555579999999999999999999999998 99999999874 4433 389999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC-H-HHHHHHHHhCCc
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN-E-AVIDYALKKRDV 333 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eEN-E-~vV~~~L~~~~~ 333 (496)
|||++..|+ .-+|.+++..| +.-|..+|-.+|..+.-- + ..|+.++-+.++
T Consensus 119 DPPyT~~G~-----------------------~LFlsRgi~~L----k~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl 171 (243)
T PF01861_consen 119 DPPYTPEGL-----------------------KLFLSRGIEAL----KGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGL 171 (243)
T ss_dssp ---SSHHHH-----------------------HHHHHHHHHTB-----STT-EEEEEE-TTT--HHHHHHHHHHHHTS--
T ss_pred CCCCCHHHH-----------------------HHHHHHHHHHh----CCCCceEEEEEecCcCcHHHHHHHHHHHHHCCc
Confidence 999776553 23588888887 555545566555533211 1 246666667787
Q ss_pred EEeec
Q 011002 334 KLVPC 338 (496)
Q Consensus 334 ~lv~~ 338 (496)
-+.++
T Consensus 172 ~i~di 176 (243)
T PF01861_consen 172 VITDI 176 (243)
T ss_dssp EEEEE
T ss_pred CHHHH
Confidence 77666
No 197
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.07 E-value=7.9e-06 Score=86.14 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=76.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce--EEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN--TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n--v~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.+-+|||.-||+|--++-.+.-+.+...|++||+|+.+++.++.|++.+|+.. +.+.+.|+..+.. .....||+|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 34589999999999999998887666799999999999999999999999976 8888999876532 13478999999
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
||= |+- --.|..|++.+ +.||. ++.|||
T Consensus 128 DPf--GSp------------------------~pfldsA~~~v----~~gGl-l~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP------------------------APFLDSALQAV----KDGGL-LCVTAT 155 (377)
T ss_dssp --S--S--------------------------HHHHHHHHHHE----EEEEE-EEEEE-
T ss_pred CCC--CCc------------------------cHhHHHHHHHh----hcCCE-EEEecc
Confidence 982 221 12589999998 77765 566777
No 198
>PLN02823 spermine synthase
Probab=98.07 E-value=4e-05 Score=79.67 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=62.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCCccccCCCCCCEEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g----~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
..+||-+|+|.|+.+..+.... ....|+++|+++..++.+++.+...+ -.++.++.+|++.+.... .+.||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEE
Confidence 4689999999999988777643 23589999999999999999876432 246899999998875322 36899999
Q ss_pred ECCC
Q 011002 255 LDAP 258 (496)
Q Consensus 255 lDpP 258 (496)
+|.+
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 9974
No 199
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.05 E-value=2.2e-05 Score=80.76 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=82.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.+..|||+|||+|-.++..|... ...|+|+|.|.-. +.+.+.+..+|+.+ |.++.+...++. ++.+++|+|+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP~eKVDiIvSE 134 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE--LPVEKVDIIVSE 134 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe--cCccceeEEeeh
Confidence 58899999999999999888763 4699999988765 99999999999988 778888776652 223789999862
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~ 317 (496)
-.| ..-+...+|...+..=+..|+|||.++=++|+++.
T Consensus 135 ----WMG-------------------y~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 135 ----WMG-------------------YFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ----hhh-------------------HHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 111 11222334555554445568999999989888654
No 200
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.04 E-value=3e-05 Score=73.91 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC-CccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE-LPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~-l~~~~~~~~FD~VLl 255 (496)
.++.+|||+|||+|..+..++... ...++++|+++.+++.+.. . ++.++.+|+.. ++. +..++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~-~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA-FPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc-cCCCCcCEEEE
Confidence 467899999999999998887653 2468999999999887753 2 34566777754 222 23468999998
Q ss_pred CC
Q 011002 256 DA 257 (496)
Q Consensus 256 Dp 257 (496)
..
T Consensus 82 ~~ 83 (194)
T TIGR02081 82 SQ 83 (194)
T ss_pred hh
Confidence 54
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.04 E-value=9.3e-05 Score=74.71 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=91.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCCCCccccC-CCCCCEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVLG-LNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv-~v~~~D~~~l~~~~~-~~~FD~VL 254 (496)
..-+|||+|||+|---+-+....+. ...|.-+|.++.-++..++.++..|+.++ .+.++|+.+...... ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4568999999999988776666553 35899999999999999999999999996 999999876532211 13568888
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~ 331 (496)
+ +|++.-=|+ .+ +-+..|.....++ .|||+|||+.--+||. -+.|..+|..|
T Consensus 215 V------sGL~ElF~D-------n~------lv~~sl~gl~~al----~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 215 V------SGLYELFPD-------ND------LVRRSLAGLARAL----EPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred E------ecchhhCCc-------HH------HHHHHHHHHHHHh----CCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 7 444321111 11 1122344445554 9999999987778873 35678888765
No 202
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.03 E-value=3.1e-05 Score=75.14 Aligned_cols=140 Identities=16% Similarity=0.112 Sum_probs=86.1
Q ss_pred EEEecCcchhHHHhcCCCC--CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC
Q 011002 160 YMLQSASSFLPVMALAPQE--KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD 237 (496)
Q Consensus 160 ~~iQd~sS~l~v~~L~~~~--g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D 237 (496)
..||-+-+.-+..+|+..+ ..-|||+|||+|-.+..|.+- .-..+++|||+.||+.+.+. .+. . .++..|
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e-g--dlil~D 101 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE-G--DLILCD 101 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh-c--Ceeeee
Confidence 4567666666666676555 678999999999888766542 24789999999999999873 222 1 234455
Q ss_pred CCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHH---HHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 238 GNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQ---KQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ---~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+-.- -.+.++.||-||.= +.+ .|.-+. ...+...+ ..++...+.+| ++|++.|+-
T Consensus 102 MG~G-lpfrpGtFDg~ISI-----SAv-------QWLcnA--~~s~~~P~~Rl~~FF~tLy~~l----~rg~raV~Q--- 159 (270)
T KOG1541|consen 102 MGEG-LPFRPGTFDGVISI-----SAV-------QWLCNA--DKSLHVPKKRLLRFFGTLYSCL----KRGARAVLQ--- 159 (270)
T ss_pred cCCC-CCCCCCccceEEEe-----eee-------eeeccc--CccccChHHHHHHHhhhhhhhh----ccCceeEEE---
Confidence 4432 12456899998751 111 111100 00111111 22334444554 999998873
Q ss_pred CCCcCCHHHHHHHHHh
Q 011002 315 IMVTENEAVIDYALKK 330 (496)
Q Consensus 315 l~~eENE~vV~~~L~~ 330 (496)
+..||++.++-++..
T Consensus 160 -fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 160 -FYPENEAQIDMIMQQ 174 (270)
T ss_pred -ecccchHHHHHHHHH
Confidence 557999999988764
No 203
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.02 E-value=1.8e-05 Score=82.19 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C---ceEEEEecCCCCC--cccc
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------V---TNTIVCNYDGNEL--PKVL 245 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g-------~---~nv~v~~~D~~~l--~~~~ 245 (496)
++.+|||||||-||-..=.... +.+.++++|++...++.++++...+. . -...++.+|...- ...+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999966544332 45789999999999999999984322 1 1245677777532 1112
Q ss_pred CC--CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 246 GL--NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 246 ~~--~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.. ..||+|=| ..+.+....-...-+.+|.++...| +|||+++-+|..
T Consensus 140 ~~~~~~FDvVSc------------------QFalHY~Fese~~ar~~l~Nvs~~L----k~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSC------------------QFALHYAFESEEKARQFLKNVSSLL----KPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEE------------------ES-GGGGGSSHHHHHHHHHHHHHTE----EEEEEEEEEEE-
T ss_pred cccCCCcceeeh------------------HHHHHHhcCCHHHHHHHHHHHHHhc----CCCCEEEEEecC
Confidence 22 48999965 1111111111122255788888887 999999987754
No 204
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.00 E-value=9.3e-06 Score=83.04 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=92.6
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCce--EEEEecC
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLK-------SLTANLHRMGVTN--TIVCNYD 237 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~-------~l~~nl~r~g~~n--v~v~~~D 237 (496)
|++.+....+.||+.|+|-..|+|+.-...|.. ++.|++-||+-.++. ..+.|++.+|+.. +.++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 334444445789999999999999987666554 368999999988876 5788999999754 6778899
Q ss_pred CCCCccccCCCCCCEEEECCCCCCC-C--cccCCchhhcc--------CCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 011002 238 GNELPKVLGLNTVDRVLLDAPCSGT-G--VISKDESVKTS--------KSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 238 ~~~l~~~~~~~~FD~VLlDpPCSg~-G--vi~r~p~i~~~--------~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG 306 (496)
....+.. ....||.|+||||+--- | .+.+.-.++.. ........+..+--.+|.-+.+.| .-||
T Consensus 274 ~sn~~~r-sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L----~~gg 348 (421)
T KOG2671|consen 274 FSNPPLR-SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL----VDGG 348 (421)
T ss_pred ccCcchh-hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh----hcCc
Confidence 8876543 35789999999997421 1 11111111110 011223345555566777777776 9999
Q ss_pred EEEE
Q 011002 307 YIVY 310 (496)
Q Consensus 307 ~LVY 310 (496)
++|+
T Consensus 349 rlv~ 352 (421)
T KOG2671|consen 349 RLVF 352 (421)
T ss_pred eEEE
Confidence 9997
No 205
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.98 E-value=5.9e-05 Score=74.19 Aligned_cols=114 Identities=9% Similarity=-0.011 Sum_probs=75.8
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH------------HHcCCceEEEEecCCCCCc
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL------------HRMGVTNTIVCNYDGNELP 242 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl------------~r~g~~nv~v~~~D~~~l~ 242 (496)
.+.++.+||+.+||.|.-..+||.. +-.|+|+|+|+..++.+.+.. .+..-.+|.+.++|...++
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3446789999999999999999986 247999999999999875521 1112236899999998885
Q ss_pred cc-cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 243 KV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 243 ~~-~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.. ...+.||.|.- |...-.+ .| ....+...+...+| +|||.++..|-..
T Consensus 117 ~~~~~~~~fD~VyD---ra~~~Al--pp---------------~~R~~Y~~~l~~lL----~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYD---RGAYIAL--PN---------------DLRTNYAKMMLEVC----SNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeee---ehhHhcC--CH---------------HHHHHHHHHHHHHh----CCCcEEEEEEEec
Confidence 31 11257999853 1111111 11 11223455556665 9999999887544
No 206
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.96 E-value=2.2e-05 Score=73.98 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=50.3
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecCCCC-C-ccccCCCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDGNE-L-PKVLGLNTVD 251 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g--~-~nv~v~~~D~~~-l-~~~~~~~~FD 251 (496)
..+.+||++|||.|--++.++.+. ....|++-|.++ .+..++.|+..++ . .++.+...|=.+ . ........||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999999998888874 346899999999 9999999999987 3 346666555322 1 1222335899
Q ss_pred EEEE
Q 011002 252 RVLL 255 (496)
Q Consensus 252 ~VLl 255 (496)
+||.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 207
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.95 E-value=5.7e-06 Score=89.73 Aligned_cols=110 Identities=23% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC------ccccCCCC
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL------PKVLGLNT 249 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l------~~~~~~~~ 249 (496)
++++..||||||||||+....++.|+-++.|+|+|+-|-. -+.|+.....|++.- ...+..-.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999988899999998732 234444444554321 11222346
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.|+||.|..-+-. ..|..+ +..|-.|...|+++...+|..||.+|--
T Consensus 111 advVLhDgapnVg----------~~w~~D-----A~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 111 ADVVLHDGAPNVG----------GNWVQD-----AFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CcEEeecCCCccc----------hhHHHH-----HHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 7999999532222 233322 2344455555555555555999996643
No 208
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.95 E-value=4.2e-06 Score=80.89 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcccc--CCCCCCEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~--~~~~FD~VL 254 (496)
..+.|+|..||.||-|++.|... ..|+++|+++-++..+++|++-+|+++ |.++++|..++...+ ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 45789999999999999887763 479999999999999999999999976 999999987653322 113477999
Q ss_pred ECCCCCCCCccc
Q 011002 255 LDAPCSGTGVIS 266 (496)
Q Consensus 255 lDpPCSg~Gvi~ 266 (496)
+-||-+|.|...
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988653
No 209
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.93 E-value=2.1e-05 Score=77.55 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=36.2
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHH
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKS-LTAN 222 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~-l~~n 222 (496)
.+|.+|||+|||||++|..+++. +.+.|+|+|+++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36889999999999999999886 34689999999987764 4443
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=4.3e-05 Score=74.51 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=64.1
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+.+|+|+|||+|-=++.+|-..+ ...|+-+|....|+.-++.-.+.+|++|+.++++.+.++..... . ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~-~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKK-Q-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccc-c-CcEEEe
Confidence 68999999999999999985544 46799999999999999999999999999999999988764321 1 999987
No 211
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=3.9e-05 Score=73.78 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=88.4
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCCccccCCCCCCE
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~-v~~~D~~~l~~~~~~~~FD~ 252 (496)
+.......||++|||||.-=-+.- +.+...|+++|.++.+-+.+...+...-..++. ++.+|+.+++.. +++++|.
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~Dt 148 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDT 148 (252)
T ss_pred hcccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeee
Confidence 333344568999999996543221 124468999999999999999999888666766 999999999864 4689999
Q ss_pred EEEC-CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 011002 253 VLLD-APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 253 VLlD-pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~ 330 (496)
|++- .=||-. .+.+.|.+.-++| +|||++++-. |....-....++|+.
T Consensus 149 VV~TlvLCSve-----------------------~~~k~L~e~~rlL----RpgG~iifiE---Hva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 149 VVCTLVLCSVE-----------------------DPVKQLNEVRRLL----RPGGRIIFIE---HVAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEEEeccC-----------------------CHHHHHHHHHHhc----CCCcEEEEEe---cccccchHHHHHHHH
Confidence 9863 123322 2345677777776 9999999864 445555566666654
No 212
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.87 E-value=2.3e-05 Score=76.37 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=82.2
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
+..+-.++||+|||+|-.+-.|-.+. ..++++|||..|++.+.+. |+-. .+.+.|+..|.......+||+|.
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhhccCCcccchh
Confidence 34446899999999999998887765 4699999999999877653 2211 12233443343323347899995
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcC------------CHH
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE------------NEA 322 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eE------------NE~ 322 (496)
. .|+.-..-.-..++..+..+| +|||.+.||.=++-.+- .+.
T Consensus 194 A----------------------aDVl~YlG~Le~~~~~aa~~L----~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~ 247 (287)
T COG4976 194 A----------------------ADVLPYLGALEGLFAGAAGLL----APGGLFAFSVETLPDDGGFVLGPSQRYAHSES 247 (287)
T ss_pred h----------------------hhHHHhhcchhhHHHHHHHhc----CCCceEEEEecccCCCCCeecchhhhhccchH
Confidence 3 223222222234566677765 99999999987764432 234
Q ss_pred HHHHHHHhCCcEEeec
Q 011002 323 VIDYALKKRDVKLVPC 338 (496)
Q Consensus 323 vV~~~L~~~~~~lv~~ 338 (496)
-|...|...+++++.+
T Consensus 248 YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 248 YVRALLAASGLEVIAI 263 (287)
T ss_pred HHHHHHHhcCceEEEe
Confidence 4555555556666554
No 213
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.86 E-value=0.00019 Score=70.66 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=84.3
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~F 250 (496)
....+..+..+|||+|.|.|..+..++...++ -+++..|+ |..++.+.+ .++|.++.+|..+ .++ . +
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~~P-~-~ 159 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---PLP-V-A 159 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---CCS-S-E
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc------ccccccccccHHh---hhc-c-c
Confidence 34445666779999999999999999998875 68999998 777777777 5679999999862 232 4 9
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC--cEEEEEeCCCCCcCCHHH
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG--GYIVYSTCSIMVTENEAV 323 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpG--G~LVYSTCSl~~eENE~v 323 (496)
|+|++ ..+...|+.++. ..||+++...+ +|| |+|+....-+.....+..
T Consensus 160 D~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al----~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 160 DVYLL-------------RHVLHDWSDEDC-------VKILRNAAAAL----KPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp SEEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHS----EECTTEEEEEEEEEECSSSSSHH
T ss_pred cceee-------------ehhhhhcchHHH-------HHHHHHHHHHh----CCCCCCeEEEEeeccCCCCCCch
Confidence 99998 234455666554 56789999887 999 999998876655544433
No 214
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.84 E-value=0.00038 Score=72.15 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=97.3
Q ss_pred HHHHHHhCC-HHHHHHHHHHcCC--CCCeEEEEcCCCCCHH------------HHHHHHHHcCCccCCCCcCCcc-cEEE
Q 011002 79 IGALVEMFP-PVELMELIESFEK--PRPICLRTNTLKTRRR------------DLADVLINRGVNLDPLSKWSKV-GLVV 142 (496)
Q Consensus 79 ~~~l~~~~~-~~e~~~~lea~~~--~~p~~iRvNtlk~~~~------------~l~~~L~~~G~~~~p~~~~~~~-gl~~ 142 (496)
+......+| .+..-.+++++.. +.--.+||.|..|+.. -|.+.|...|+......+-.+. -+.+
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 344455555 4667778888753 3344689888776632 3456788888865432111111 1111
Q ss_pred ecC-CCC-----CCCCcccccceEEEec---Ccch---hHHHh---cC--------CCCCCeEeecccCCcHHHHHHHHH
Q 011002 143 YDS-QVP-----IGATPEYMAGFYMLQS---ASSF---LPVMA---LA--------PQEKERVIDMAAAPGGKTTYIAAL 199 (496)
Q Consensus 143 ~~~-~~~-----i~~~~~~~~G~~~iQd---~sS~---l~v~~---L~--------~~~g~~VLDlcAGpGgktl~lA~l 199 (496)
.++ ..- ...+..|-.|--.+.. +-|. -+..+ +. +.+|.+|||+||+|||+|-.+++.
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 111 000 1223334445333322 2222 11111 11 368999999999999999988876
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCC
Q 011002 200 MKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 200 ~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPC 259 (496)
+..|+|+|..+ +...+ +.-.+|.....|+..+... .+.+|.|+||.-|
T Consensus 233 ---G~~V~AVD~g~-----l~~~L--~~~~~V~h~~~d~fr~~p~--~~~vDwvVcDmve 280 (357)
T PRK11760 233 ---GMFVTAVDNGP-----MAQSL--MDTGQVEHLRADGFKFRPP--RKNVDWLVCDMVE 280 (357)
T ss_pred ---CCEEEEEechh-----cCHhh--hCCCCEEEEeccCcccCCC--CCCCCEEEEeccc
Confidence 35999999554 22222 2335688888888766432 3789999999864
No 215
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.83 E-value=6.4e-05 Score=81.02 Aligned_cols=121 Identities=18% Similarity=0.218 Sum_probs=78.3
Q ss_pred CCeEeecccCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~---~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
+..|||+|||+|..+...++.. +...+|+|+|.|+.++..++..+..+|.. .|+++++|++++... .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 4679999999999987655442 33469999999999999999988999985 499999999998642 5899999
Q ss_pred ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC--CCCcCCHHHHHH
Q 011002 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS--IMVTENEAVIDY 326 (496)
Q Consensus 255 lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS--l~~eENE~vV~~ 326 (496)
... .|.+.-+. +--+.|..+-+. |+|||.++=+.++ +.|-+.+..-..
T Consensus 264 SEl----LGsfg~nE----------------l~pE~Lda~~rf----Lkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 264 SEL----LGSFGDNE----------------LSPECLDAADRF----LKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp E-------BTTBTTT----------------SHHHHHHHGGGG----EEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred Eec----cCCccccc----------------cCHHHHHHHHhh----cCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 753 23221110 112235555555 4999998733333 445555554443
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.80 E-value=7.8e-05 Score=74.26 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----ceEEEEecCCCCCccccC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV----TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~----~nv~v~~~D~~~l~~~~~ 246 (496)
++++.+ ...+||=+|.|.|+.+..+...- .-..|+++|+++..++.+++-+..... +++.++..|+..+.....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 333444 46799999999999988776543 236899999999999999998776433 468999999988754432
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~ 326 (496)
..+||+|++|++= ..|.. .. ..+ .+.+..+.+.| +|||.++.-..|. ..++..+..
T Consensus 148 ~~~yDvIi~D~~d-p~~~~-----~~-l~t-----------~ef~~~~~~~L----~~~Gv~v~~~~~~--~~~~~~~~~ 203 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-PDGPA-----PN-LFT-----------REFYQLCKRRL----KPDGVLVLQAGSP--FLHPELFKS 203 (246)
T ss_dssp ST-EEEEEEESSS-TTSCG-----GG-GSS-----------HHHHHHHHHHE----EEEEEEEEEEEET--TTTHHHHHH
T ss_pred CCcccEEEEeCCC-CCCCc-----cc-ccC-----------HHHHHHHHhhc----CCCcEEEEEccCc--ccchHHHHH
Confidence 2289999999873 22211 00 111 34566666776 9999998766333 456666666
Q ss_pred HHH
Q 011002 327 ALK 329 (496)
Q Consensus 327 ~L~ 329 (496)
+.+
T Consensus 204 i~~ 206 (246)
T PF01564_consen 204 ILK 206 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 217
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=9.3e-06 Score=79.61 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=78.7
Q ss_pred cccceEEEecCcchhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEE
Q 011002 155 YMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIV 233 (496)
Q Consensus 155 ~~~G~~~iQd~sS~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v 233 (496)
|+.-+|..++-...+++. -.+..+||++|||.|.....|.+-.++. -.|+|+|.++.+++.++.+....- .++..
T Consensus 51 fkdR~wL~~Efpel~~~~---~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~a 126 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVD---EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEA 126 (264)
T ss_pred cchhHHHHHhhHHhhCcc---ccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcc
Confidence 555566666543332221 1122389999999999999888765543 489999999999999998876543 33333
Q ss_pred EecCCC--CCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 234 CNYDGN--ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 234 ~~~D~~--~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
...|.. .+......+++|.|.+ ++ +.....++. +...+.+..++| ||||.|++.
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~--------IF-----vLSAi~pek-------~~~a~~nl~~ll----KPGG~llfr 182 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITL--------IF-----VLSAIHPEK-------MQSVIKNLRTLL----KPGGSLLFR 182 (264)
T ss_pred cceeccchhccCCCCcCccceEEE--------EE-----EEeccChHH-------HHHHHHHHHHHh----CCCcEEEEe
Confidence 333433 2223334467887654 00 000111121 122355555555 999999987
Q ss_pred eCCC
Q 011002 312 TCSI 315 (496)
Q Consensus 312 TCSl 315 (496)
.--.
T Consensus 183 DYg~ 186 (264)
T KOG2361|consen 183 DYGR 186 (264)
T ss_pred eccc
Confidence 5443
No 218
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.73 E-value=0.00015 Score=72.17 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=65.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
...++||+|||-|+.|..++.++. .|+|.|+|+.|..+++ +-|.+ ++..| ++... ...||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~----~kg~~---vl~~~--~w~~~--~~~fDvIsc-- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLS----KKGFT---VLDID--DWQQT--DFKFDVISC-- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHH----hCCCe---EEehh--hhhcc--CCceEEEee--
Confidence 457899999999999999999875 5999999998866554 45553 33222 23221 257999975
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
..++.|. ..-..||..+.+.| +|+|+|+.+
T Consensus 158 ----LNvLDRc----------------~~P~~LL~~i~~~l----~p~G~lilA 187 (265)
T PF05219_consen 158 ----LNVLDRC----------------DRPLTLLRDIRRAL----KPNGRLILA 187 (265)
T ss_pred ----hhhhhcc----------------CCHHHHHHHHHHHh----CCCCEEEEE
Confidence 3333332 22345688888876 999999865
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.73 E-value=0.00029 Score=68.36 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=85.3
Q ss_pred EeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECCCCC
Q 011002 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpPCS 260 (496)
|+|+||-=|...++|.+.-. ...++|+|+++.-++.+++++.+.|+.+ |.+..+|+...-.. .+..|.|++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~--~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP--GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G--GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC--CCCCCEEEE----e
Confidence 78999999999999988632 2479999999999999999999999866 99999998754221 134788887 3
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 011002 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 261 g~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
|.| ..+-.+||......+ +....||. .|--+...+..+|..++|.+++-
T Consensus 74 GMG--------------------G~lI~~ILe~~~~~~----~~~~~lIL-----qP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMG--------------------GELIIEILEAGPEKL----SSAKRLIL-----QPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE---------------------HHHHHHHHHHTGGGG----TT--EEEE-----EESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCC--------------------HHHHHHHHHhhHHHh----ccCCeEEE-----eCCCChHHHHHHHHHCCCEEEEe
Confidence 444 234567788877765 55557775 44568889999999999888763
No 220
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.73 E-value=0.00033 Score=65.44 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---ccCCCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTV 250 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---~~~~~~F 250 (496)
+++..|--||++|.|+|-+|-.|...+-....++++|.|++-...|.+.. +.+.++++|+..+.. ......|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCee
Confidence 46778999999999999999998888766679999999999998877653 345688899876642 1234679
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|.|++-.|--.. .. +.-.+||+.+...| .+||.||--|-+
T Consensus 119 D~viS~lPll~~-------------P~-------~~~iaile~~~~rl----~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNF-------------PM-------HRRIAILESLLYRL----PAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccC-------------cH-------HHHHHHHHHHHHhc----CCCCeEEEEEec
Confidence 999987762111 11 11235788888876 999999987776
No 221
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.71 E-value=1.2e-05 Score=68.97 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=26.1
Q ss_pred eecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 183 IDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 183 LDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
|++|++.|..|++|++.++..+ .++++|..+. .+...+.+++.++. ++.++.+|..+....+....||+|++|.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999999999998877655 7999999996 44455555556664 59999999865432232368999999986
No 222
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=4.5e-05 Score=81.42 Aligned_cols=107 Identities=22% Similarity=0.336 Sum_probs=86.6
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcc--ccCCCCCCEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPK--VLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~--~~~~~~FD~V 253 (496)
.++-+|||.-||+|--++..|..+++-+.|+|+|.++..++..+.|++.+++.+ ++....|+..+-. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 457899999999999999999999988899999999999999999999999987 6677788865421 1113689999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
=+||= |+- -.+|+.|++.+ +.|| |++.|||
T Consensus 188 DLDPy--Gs~------------------------s~FLDsAvqav----~~gG-LL~vT~T 217 (525)
T KOG1253|consen 188 DLDPY--GSP------------------------SPFLDSAVQAV----RDGG-LLCVTCT 217 (525)
T ss_pred ecCCC--CCc------------------------cHHHHHHHHHh----hcCC-EEEEEec
Confidence 99982 221 12589999998 8877 5577887
No 223
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00038 Score=70.73 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=87.2
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----CceEEEEecCCCCCccccC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----VTNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g----~~nv~v~~~D~~~l~~~~~ 246 (496)
.++..+.| .+||=+|-|.|+.+-.+..... --.++.|||++..++.+++-+.... -+.+.++..|+..+-....
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 44455666 6999999999999998887754 4689999999999999999887665 3458899999988765443
Q ss_pred CCCCCEEEECCC-CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 247 LNTVDRVLLDAP-CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 247 ~~~FD~VLlDpP-CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.+||+|++|-- +.|-|. .-...+.+..+.+.| +++|.+|.-+=|.
T Consensus 148 -~~fDvIi~D~tdp~gp~~-------------------~Lft~eFy~~~~~~L----~~~Gi~v~q~~~~ 193 (282)
T COG0421 148 -EKFDVIIVDSTDPVGPAE-------------------ALFTEEFYEGCRRAL----KEDGIFVAQAGSP 193 (282)
T ss_pred -CcCCEEEEcCCCCCCccc-------------------ccCCHHHHHHHHHhc----CCCcEEEEecCCc
Confidence 47999999942 122110 011244567777776 9999998875553
No 224
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.65 E-value=7.5e-05 Score=75.49 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=59.6
Q ss_pred eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCS 260 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCS 260 (496)
+|+|++||.||.++.+.+. +-..|+|+|+++..++..+.|.... +.+.|...+....-...+|+|+.+|||.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 6999999999998877654 2347899999999999999886421 4566776664321025799999999998
Q ss_pred CCCcccC
Q 011002 261 GTGVISK 267 (496)
Q Consensus 261 g~Gvi~r 267 (496)
+.....+
T Consensus 74 ~fS~ag~ 80 (275)
T cd00315 74 PFSIAGK 80 (275)
T ss_pred hhhHHhh
Confidence 8765544
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.61 E-value=0.00011 Score=73.66 Aligned_cols=88 Identities=22% Similarity=0.087 Sum_probs=70.4
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~- 245 (496)
..-.+..+++.++..|||+|+|+|..|..|+... ..|+++|+++..++.+++.+. ...++.++++|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHh
Confidence 3455677888899999999999999999998875 589999999999999998766 4467999999998875421
Q ss_pred CCCCCCEEEECCCC
Q 011002 246 GLNTVDRVLLDAPC 259 (496)
Q Consensus 246 ~~~~FD~VLlDpPC 259 (496)
-......|+.+.|+
T Consensus 94 ~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 94 LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSSEEEEEEEETG
T ss_pred hcCCceEEEEEecc
Confidence 01356688888885
No 226
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.53 E-value=0.00027 Score=63.35 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=51.0
Q ss_pred eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
.|||+||+.|..+..++...+ .+.|+++|.++..++.+++|+..+++.++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999988754 4699999999999999999999999888888776654
No 227
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.52 E-value=0.00037 Score=69.63 Aligned_cols=138 Identities=16% Similarity=0.121 Sum_probs=92.2
Q ss_pred ceEEEecCcc-hhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEe
Q 011002 158 GFYMLQSASS-FLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCN 235 (496)
Q Consensus 158 G~~~iQd~sS-~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~ 235 (496)
|.+++-.+.- .-.+...++++++.||++|-|||..|..|.+.. ..|+|+|+++.++..+..+.+-....+ ..++.
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~ 113 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH 113 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEe
Confidence 5555544221 122344567899999999999999999888763 579999999999999999887655444 88999
Q ss_pred cCCCCCccccCCCCCCEEEECCCCCCC--Cccc--CCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 236 YDGNELPKVLGLNTVDRVLLDAPCSGT--GVIS--KDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 236 ~D~~~l~~~~~~~~FD~VLlDpPCSg~--Gvi~--r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
+|....+. ..||.++.|-|+--+ +++- .++.+.|. ...-+|++. |++++ ..-|...|+
T Consensus 114 gD~lK~d~----P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLv----a~pgd~~Yc 175 (315)
T KOG0820|consen 114 GDFLKTDL----PRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLV----ARPGDSLYC 175 (315)
T ss_pred cccccCCC----cccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhc----cCCCCchhc
Confidence 99877653 469999999998443 3221 11111111 011345543 45555 334677887
Q ss_pred eCCCC
Q 011002 312 TCSIM 316 (496)
Q Consensus 312 TCSl~ 316 (496)
--|++
T Consensus 176 rlsin 180 (315)
T KOG0820|consen 176 RLSIN 180 (315)
T ss_pred eeehh
Confidence 77765
No 228
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.52 E-value=0.00063 Score=65.80 Aligned_cols=128 Identities=20% Similarity=0.294 Sum_probs=88.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceE-EEEecCCCCCcccc------CCCCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT-IVCNYDGNELPKVL------GLNTVD 251 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv-~v~~~D~~~l~~~~------~~~~FD 251 (496)
+.+||++|||+|-.+.++|+.++. -.-.--|.+...+..+...+...|+.|+ ..+..|+..-+... ....||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 446999999999999999999975 5667889999999999999999999885 34556665542222 235899
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEE-EEeCCC---CCcCCHHHHHHH
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV-YSTCSI---MVTENEAVIDYA 327 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LV-YSTCSl---~~eENE~vV~~~ 327 (496)
.|++ ...-.|..... -..|+..|.++| ++||.|+ |--... +..|.-+..+..
T Consensus 105 ~i~~-------------------~N~lHI~p~~~-~~~lf~~a~~~L----~~gG~L~~YGPF~~~G~~ts~SN~~FD~s 160 (204)
T PF06080_consen 105 AIFC-------------------INMLHISPWSA-VEGLFAGAARLL----KPGGLLFLYGPFNRDGKFTSESNAAFDAS 160 (204)
T ss_pred eeee-------------------hhHHHhcCHHH-HHHHHHHHHHhC----CCCCEEEEeCCcccCCEeCCcHHHHHHHH
Confidence 9987 11111111111 244788888876 9999875 555443 223455556667
Q ss_pred HHhC
Q 011002 328 LKKR 331 (496)
Q Consensus 328 L~~~ 331 (496)
|+.+
T Consensus 161 Lr~r 164 (204)
T PF06080_consen 161 LRSR 164 (204)
T ss_pred HhcC
Confidence 7654
No 229
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.52 E-value=0.00043 Score=75.80 Aligned_cols=147 Identities=17% Similarity=0.110 Sum_probs=87.3
Q ss_pred ceEEEecCcchhHHHhcCCC--CCCeEeecccCCcHHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcCCc--e
Q 011002 158 GFYMLQSASSFLPVMALAPQ--EKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMGVT--N 230 (496)
Q Consensus 158 G~~~iQd~sS~l~v~~L~~~--~g~~VLDlcAGpGgktl~lA~l~~---~~g~V~AvDis~~rl~~l~~nl~r~g~~--n 230 (496)
|.++.-..-+.+.+..+.+. |+..|.|+|||+|+.-......+. ....+++.+.+..+...++.|+.-.|+. .
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t 274 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN 274 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc
Confidence 43433333334445566654 678999999999998765444332 1236899999999999999998766653 2
Q ss_pred EEEEecCCCCCccccCCCCCCEEEECCCCCCC---CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGT---GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 231 v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~---Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
..+..+|...-+.......||.|+.|||.+.. |.........+.+...-+..+.......+.+++..| ++||+
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L----~~gG~ 350 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVL----GQEGT 350 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhc----CCCCe
Confidence 33444554433322223579999999999764 111111111111111111223344566778888876 89996
Q ss_pred E
Q 011002 308 I 308 (496)
Q Consensus 308 L 308 (496)
.
T Consensus 351 ~ 351 (501)
T TIGR00497 351 A 351 (501)
T ss_pred E
Confidence 4
No 230
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00032 Score=72.80 Aligned_cols=119 Identities=22% Similarity=0.251 Sum_probs=87.6
Q ss_pred ecCcchhHHHhcCCCC---CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC
Q 011002 163 QSASSFLPVMALAPQE---KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN 239 (496)
Q Consensus 163 Qd~sS~l~v~~L~~~~---g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~ 239 (496)
|....-+.+.++..-. ..+|||.-||+|.=++-+|--.+.. .|+++|+|+..++.++.|+..+...+..+++.|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHH
Confidence 4444334444443223 6799999999999999988877654 89999999999999999999996667777778887
Q ss_pred CCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 240 ELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 240 ~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
.+.... ...||+|=+||= |+- --.+++|++.+ +.||+|.. |||
T Consensus 113 ~lm~~~-~~~fd~IDiDPF--GSP------------------------aPFlDaA~~s~----~~~G~l~v-TAT 155 (380)
T COG1867 113 ALLHEL-HRAFDVIDIDPF--GSP------------------------APFLDAALRSV----RRGGLLCV-TAT 155 (380)
T ss_pred HHHHhc-CCCccEEecCCC--CCC------------------------chHHHHHHHHh----hcCCEEEE-Eec
Confidence 653322 268999999982 221 12588899987 88887754 555
No 231
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.49 E-value=5.6e-05 Score=77.45 Aligned_cols=90 Identities=23% Similarity=0.318 Sum_probs=64.6
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc----
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---- 245 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~---- 245 (496)
++.+|.++++..++|+--|.||.|..|.+.+++ +.|+|+|.++.+++.+.+++... -.++.+++.+..++...+
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHcc
Confidence 356678899999999999999999999999887 99999999999999998888765 346889998887764332
Q ss_pred CCCCCCEEEECCCCCC
Q 011002 246 GLNTVDRVLLDAPCSG 261 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg 261 (496)
....+|.||+|--+|.
T Consensus 90 ~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 90 GINKVDGILFDLGVSS 105 (310)
T ss_dssp TTS-EEEEEEE-S--H
T ss_pred CCCccCEEEEccccCH
Confidence 2358999999988774
No 232
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.46 E-value=0.00035 Score=68.43 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=74.8
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH------------cCCceEEEEecCCCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR------------MGVTNTIVCNYDGNEL 241 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r------------~g~~nv~v~~~D~~~l 241 (496)
+...++.+||+.|||.|.-...||+. +-.|+|+|+|+..++.+.+.... ....+|.+.++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34677889999999999999999985 25899999999999988432211 1123578999999887
Q ss_pred ccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 242 ~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
+... .+.||.|+= |...-.+ +|+.+ .+...+...+| +|||.+++.|-..
T Consensus 110 ~~~~-~g~fD~iyD---r~~l~Al--pp~~R---------------~~Ya~~l~~ll----~p~g~~lLi~l~~ 158 (218)
T PF05724_consen 110 PPED-VGKFDLIYD---RTFLCAL--PPEMR---------------ERYAQQLASLL----KPGGRGLLITLEY 158 (218)
T ss_dssp GGSC-HHSEEEEEE---CSSTTTS---GGGH---------------HHHHHHHHHCE----EEEEEEEEEEEES
T ss_pred Chhh-cCCceEEEE---ecccccC--CHHHH---------------HHHHHHHHHHh----CCCCcEEEEEEEc
Confidence 6432 257999973 2222222 23322 22345555665 9999976665543
No 233
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00047 Score=67.90 Aligned_cols=77 Identities=18% Similarity=0.139 Sum_probs=49.6
Q ss_pred cCCCCCC-eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccccCCCCCC
Q 011002 174 LAPQEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~-~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
....++. .++|+|||+|-.+..+|.... .|+|+|+|..+|+.++..-.-.-+ ....+...++..+.. ..+++|
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--~e~SVD 102 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--GEESVD 102 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--CCccee
Confidence 3344555 799999999966666777754 599999999999977654321111 112333444444432 247899
Q ss_pred EEEE
Q 011002 252 RVLL 255 (496)
Q Consensus 252 ~VLl 255 (496)
+|++
T Consensus 103 lI~~ 106 (261)
T KOG3010|consen 103 LITA 106 (261)
T ss_pred eehh
Confidence 9986
No 234
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.40 E-value=0.00043 Score=64.25 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=57.9
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHH
Q 011002 207 YANEMKASRLKSLTANLHRMG---VTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC 283 (496)
Q Consensus 207 ~AvDis~~rl~~l~~nl~r~g---~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l 283 (496)
+|+|+|+.+++.++++....+ ..++.++.+|+.++|. ..+.||.|++ +.++. .+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~fD~v~~-----~~~l~----------------~~ 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--DDCEFDAVTM-----GYGLR----------------NV 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--CCCCeeEEEe-----cchhh----------------cC
Confidence 489999999999987765322 3569999999998873 3478999986 22210 00
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 284 SYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 284 ~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
....+.|.++.+.| ||||+|+....+.
T Consensus 58 -~d~~~~l~ei~rvL----kpGG~l~i~d~~~ 84 (160)
T PLN02232 58 -VDRLRAMKEMYRVL----KPGSRVSILDFNK 84 (160)
T ss_pred -CCHHHHHHHHHHHc----CcCeEEEEEECCC
Confidence 11234677888876 9999999887763
No 235
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.33 E-value=0.0071 Score=56.82 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=94.0
Q ss_pred cccCCcHHHHHHHHHcCCCcEEEEE--eCCHHHHHH---HHHHHHHcCCce-EEEEecCCCCCcccc--CCCCCCEEEEC
Q 011002 185 MAAAPGGKTTYIAALMKNTGLIYAN--EMKASRLKS---LTANLHRMGVTN-TIVCNYDGNELPKVL--GLNTVDRVLLD 256 (496)
Q Consensus 185 lcAGpGgktl~lA~l~~~~g~V~Av--Dis~~rl~~---l~~nl~r~g~~n-v~v~~~D~~~l~~~~--~~~~FD~VLlD 256 (496)
+|=|--++++.|+...+....|+|. |.....++. +..|+..+.-.+ .++...|++.+...+ ....||+|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 4445556777788776633456555 544433332 335665553223 344567998887655 56789999999
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~lv 336 (496)
=|+.|.|.- .....+.....+-..++.+|..+| +++|.|..+-|.-.|- +...|..+.++.++.++
T Consensus 83 FPH~G~~~~---------~~~~~i~~nr~Ll~~Ff~Sa~~~L----~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 83 FPHVGGGSE---------DGKRNIRLNRELLRGFFKSASQLL----KPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCCCCCCcc---------chhHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEE
Confidence 999985532 223445555666677788888886 9999999999998775 77777777667787776
Q ss_pred ec
Q 011002 337 PC 338 (496)
Q Consensus 337 ~~ 338 (496)
..
T Consensus 149 ~~ 150 (166)
T PF10354_consen 149 RK 150 (166)
T ss_pred EE
Confidence 54
No 236
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.00058 Score=69.34 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc---C
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL---G 246 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~---~ 246 (496)
++.+|.+.|+...+|.--|-||.|-.|...++..|.++|+|.++.+++.+++.+..++ .++.+++.....+.... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 3567889999999999999999999999999888999999999999999999999887 57888888776654322 2
Q ss_pred CCCCCEEEECCCCCC
Q 011002 247 LNTVDRVLLDAPCSG 261 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg 261 (496)
.+.+|-||+|---|.
T Consensus 94 i~~vDGiL~DLGVSS 108 (314)
T COG0275 94 IGKVDGILLDLGVSS 108 (314)
T ss_pred CCceeEEEEeccCCc
Confidence 358999999865543
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.25 E-value=0.0032 Score=65.10 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=82.2
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHcCCceEEE--EecCCCCCcccc----C
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKN---TGLIYANEMKASRLKSLTANLHRMGVTNTIV--CNYDGNELPKVL----G 246 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~---~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v--~~~D~~~l~~~~----~ 246 (496)
+.++..|+|+|||.|.||..|...+.. ....+++|+|...|+.+..++..-.++.+.+ +++|......++ .
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356779999999999999988876643 2468999999999999999998444555444 677765432211 1
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCcEEEEEeCCCCCcCCHHHHH
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAID-MVDANSKSGGYIVYSTCSIMVTENEAVID 325 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~-~L~~~lkpGG~LVYSTCSl~~eENE~vV~ 325 (496)
.....+|+. |=|..|- ..+.+. ..+|....+ .| .|||.|+... --..+.++|.
T Consensus 154 ~~~~r~~~f--lGSsiGN----------f~~~ea-------~~fL~~~~~~~l----~~~d~lLiG~---D~~k~~~~l~ 207 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGN----------FSRPEA-------AAFLAGFLATAL----SPSDSFLIGL---DGCKDPDKVL 207 (319)
T ss_pred cCCccEEEE--eCccccC----------CCHHHH-------HHHHHHHHHhhC----CCCCEEEEec---CCCCCHHHHH
Confidence 134566665 3333442 232222 334555555 55 9999998853 4445666665
Q ss_pred HHHH
Q 011002 326 YALK 329 (496)
Q Consensus 326 ~~L~ 329 (496)
.+-.
T Consensus 208 ~AY~ 211 (319)
T TIGR03439 208 RAYN 211 (319)
T ss_pred HHhc
Confidence 5543
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.24 E-value=0.0021 Score=62.45 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=53.7
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-------HcCC--ceEEEEecCCCCCc
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH-------RMGV--TNTIVCNYDGNELP 242 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~-------r~g~--~nv~v~~~D~~~l~ 242 (496)
..+++.+++..+|+|||.|...+++|...+ -...+++|+.+...+.+..... .+|. ..+.+..+|..+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 456788999999999999999888876654 3569999999998876665433 3454 35788888876543
Q ss_pred c---ccCCCCCCEEEECCCC
Q 011002 243 K---VLGLNTVDRVLLDAPC 259 (496)
Q Consensus 243 ~---~~~~~~FD~VLlDpPC 259 (496)
. .+ ...|+|++|-=|
T Consensus 115 ~~~~~~--s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 115 FVKDIW--SDADVVFVNNTC 132 (205)
T ss_dssp HHHHHG--HC-SEEEE--TT
T ss_pred hHhhhh--cCCCEEEEeccc
Confidence 1 12 468999997654
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00075 Score=64.58 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.|.+|||+|+|+|--++..+.. +...|++.|+.+.....+.-|++.+|+ +|.++..|... . +..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~----~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S----PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C----CcceeEEEe
Confidence 5899999999999888755544 346899999999999999999999997 57788777654 2 268999997
No 240
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.22 E-value=0.0014 Score=64.70 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=59.5
Q ss_pred chhHHHhcCCCCCC--eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC----C-----ceEEEEe
Q 011002 167 SFLPVMALAPQEKE--RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG----V-----TNTIVCN 235 (496)
Q Consensus 167 S~l~v~~L~~~~g~--~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g----~-----~nv~v~~ 235 (496)
....+.++++++|. +|||+-||-|.-++.+|.+ + +.|+++|.|+-....+..-++++. . .++.+++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34567778777775 8999999999999999875 3 689999999998888887766642 1 3689999
Q ss_pred cCCCCCccccCCCCCCEEEECCC
Q 011002 236 YDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 236 ~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
+|..++.. ....+||+|.+||=
T Consensus 139 ~d~~~~L~-~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLR-QPDNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCC-CHSS--SEEEE--S
T ss_pred CCHHHHHh-hcCCCCCEEEECCC
Confidence 99988654 33479999999994
No 241
>PRK04148 hypothetical protein; Provisional
Probab=97.15 E-value=0.004 Score=56.48 Aligned_cols=71 Identities=3% Similarity=-0.067 Sum_probs=51.0
Q ss_pred cCCCCCCeEeecccCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGg-ktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
+....+.+|||+|||.|. .+..|+++ +..|+|+|+++.+++.++.+ + +.++..|..+....+ ...+|+
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~-y~~a~l 80 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI-YKNAKL 80 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH-HhcCCE
Confidence 333456899999999996 66666653 25899999999987766554 3 457778887653221 268999
Q ss_pred EEE
Q 011002 253 VLL 255 (496)
Q Consensus 253 VLl 255 (496)
|..
T Consensus 81 iys 83 (134)
T PRK04148 81 IYS 83 (134)
T ss_pred EEE
Confidence 975
No 242
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.15 E-value=0.001 Score=60.65 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=67.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCC-chhhccCCHHHHHH
Q 011002 205 LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKD-ESVKTSKSLEDIQK 282 (496)
Q Consensus 205 ~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~-p~i~~~~s~~~i~~ 282 (496)
+|+|+||.+.+++..++++...|+.+ |.+++..-..+....+.+.+|.|+.| .|.+... ..+- .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-----LGYLPggDk~i~---------T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-----LGYLPGGDKSIT---------T 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-----ESB-CTS-TTSB----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-----CCcCCCCCCCCC---------c
Confidence 58999999999999999999999865 88888776666665543479999875 5655432 2221 1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCc---CCHHHHHHHHHh
Q 011002 283 CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVT---ENEAVIDYALKK 330 (496)
Q Consensus 283 l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~e---ENE~vV~~~L~~ 330 (496)
.+..-..-|..|+.+| +|||.|+...-.=++. |-++|.+ +++.
T Consensus 67 ~~~TTl~Al~~al~lL----~~gG~i~iv~Y~GH~gG~eE~~av~~-~~~~ 112 (140)
T PF06962_consen 67 KPETTLKALEAALELL----KPGGIITIVVYPGHPGGKEESEAVEE-FLAS 112 (140)
T ss_dssp -HHHHHHHHHHHHHHE----EEEEEEEEEE--STCHHHHHHHHHHH-HHHT
T ss_pred CcHHHHHHHHHHHHhh----ccCCEEEEEEeCCCCCCHHHHHHHHH-HHHh
Confidence 1222234578888887 9999998876665663 4444444 4444
No 243
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.14 E-value=0.001 Score=63.93 Aligned_cols=117 Identities=16% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CceEEEEecCCCCC-ccccCCCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG-------VTNTIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g-------~~nv~v~~~D~~~l-~~~~~~~~ 249 (496)
..-.+.|+|||-||..+.|+-+.+. ..|++.+|.-...+-.++++..++ ..|+.+...++..+ |..+..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 4567999999999999999999875 789999999888888888888776 67888887777654 44333233
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
.+.++. +-++|..+-..+...+ .+..++..-.-+| ++||.++++|=
T Consensus 139 Lskmff---------~fpdpHfk~~khk~ri-----i~~~l~~eyay~l----~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFF---------LFPDPHFKARKHKWRI-----ITSTLLSEYAYVL----REGGILYTITD 184 (249)
T ss_pred ccccee---------ecCChhHhhhhcccee-----echhHHHHHHhhh----hcCceEEEEee
Confidence 333332 1235555443333222 2233455555554 99999988773
No 244
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.14 E-value=0.001 Score=68.07 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=82.0
Q ss_pred chhHHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--c----eEEEEecCCCC
Q 011002 167 SFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV--T----NTIVCNYDGNE 240 (496)
Q Consensus 167 S~l~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~--~----nv~v~~~D~~~ 240 (496)
|+|+-.+. ++++.|||||||-||-.+-.-.. +-+.++++||..--+..++.+...+.- . .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 45544444 57899999999999987644322 236899999999989888887765532 1 25677777643
Q ss_pred C--ccc--cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 241 L--PKV--LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 241 l--~~~--~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
- ... +...+||+|=|-=- ..+.+.... .-+.+|.++..+| +|||+++-++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~------------~HYaFetee------~ar~~l~Nva~~L----kpGG~FIgTi---- 237 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFA------------FHYAFETEE------SARIALRNVAKCL----KPGGVFIGTI---- 237 (389)
T ss_pred hHHHHhccCCCCCcceeeeeee------------EeeeeccHH------HHHHHHHHHHhhc----CCCcEEEEec----
Confidence 1 111 12234998855111 112222111 1244688888887 9999997542
Q ss_pred CcCCHHHHHHHHHh
Q 011002 317 VTENEAVIDYALKK 330 (496)
Q Consensus 317 ~eENE~vV~~~L~~ 330 (496)
-|-.||-+=|+.
T Consensus 238 --Pdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 238 --PDSDVIIKRLRA 249 (389)
T ss_pred --CcHHHHHHHHHh
Confidence 455666666654
No 245
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.12 E-value=0.0016 Score=65.99 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=56.3
Q ss_pred eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc-ccCCCCCCEEEECCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVDRVLLDAPC 259 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~-~~~~~~FD~VLlDpPC 259 (496)
+|+|+|||.||.++-+.+.- --.|.|+|+++..++..+.|.. .+...|...+.. .++. .+|+++.-|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc-cceEEEeccCC
Confidence 79999999999998776642 2379999999999999999986 566788877642 2221 59999999999
Q ss_pred CCCCcccC
Q 011002 260 SGTGVISK 267 (496)
Q Consensus 260 Sg~Gvi~r 267 (496)
.+.....+
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 99877654
No 246
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.11 E-value=0.0031 Score=64.77 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.+..|||+|||+|..+...|+. +..+|+|++.|. +.+.++..++.+.+. .|.++.+...++.. +++.|+|+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccC---chhccEEEec
Confidence 4788999999999999888776 346999999874 677888888877774 48888887766542 2789999987
Q ss_pred CC
Q 011002 257 AP 258 (496)
Q Consensus 257 pP 258 (496)
|-
T Consensus 251 PM 252 (517)
T KOG1500|consen 251 PM 252 (517)
T ss_pred cc
Confidence 73
No 247
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.10 E-value=0.0057 Score=59.40 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
++-.|-|||||-+..+ +.+++.-.|...|+-.. |-.|+..|+...|. +++.+|++++
T Consensus 72 ~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL--~~~svDv~Vf-- 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPL--EDESVDVAVF-- 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S----TT-EEEEEE--
T ss_pred CCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcC--CCCceeEEEE--
Confidence 4578999999998765 44445457999998652 22355678888874 4589999988
Q ss_pred CC-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEe
Q 011002 258 PC-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336 (496)
Q Consensus 258 PC-Sg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~lv 336 (496)
| |-.|+ .-...|.+|.++| ||||.|....-. +.-+|.......+...||++.
T Consensus 129 -cLSLMGT---------------------n~~~fi~EA~RvL----K~~G~L~IAEV~-SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 129 -CLSLMGT---------------------NWPDFIREANRVL----KPGGILKIAEVK-SRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp -ES---SS----------------------HHHHHHHHHHHE----EEEEEEEEEEEG-GG-S-HHHHHHHHHCTTEEEE
T ss_pred -EhhhhCC---------------------CcHHHHHHHHhee----ccCcEEEEEEec-ccCcCHHHHHHHHHHCCCeEE
Confidence 5 22332 1245699999998 999999877543 223455555555666666654
No 248
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.09 E-value=0.0017 Score=66.37 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=79.6
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCce-EEEEecC-CCC-Cccc-cCCCCCCEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVCNYD-GNE-LPKV-LGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~-g~~n-v~v~~~D-~~~-l~~~-~~~~~FD~V 253 (496)
.-++||+|+|...+--.|+..+. .-.++|.|+++..++.+++|+.++ ++.+ |.++... ... +... ...+.||.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999999888666655543 369999999999999999999999 8865 7665442 222 2111 123689999
Q ss_pred EECCCCCCCCc------ccCC------------chhhccCCHHH-HHH--HHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 254 LLDAPCSGTGV------ISKD------------ESVKTSKSLED-IQK--CSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 254 LlDpPCSg~Gv------i~r~------------p~i~~~~s~~~-i~~--l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
+||||...+.- .++. |.....-+..+ +.. -...-.+++.....+ + ..+.+| |
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-----~-~~v~Wf-T 254 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQL-----K-DQVRWF-T 254 (299)
T ss_dssp EE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-----G-GGEEEE-E
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHh-----C-CCcEEE-e
Confidence 99999765431 1111 11111101111 111 112345677777765 2 244555 6
Q ss_pred CCCCCcCCHHHHHHHHHhCCc
Q 011002 313 CSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 313 CSl~~eENE~vV~~~L~~~~~ 333 (496)
|=+...+|-..+...|++.++
T Consensus 255 smvgKkssL~~l~~~L~~~~~ 275 (299)
T PF05971_consen 255 SMVGKKSSLKPLKKELKKLGA 275 (299)
T ss_dssp EEESSGGGHHHHHHHHHHTT-
T ss_pred ecccCcccHHHHHHHHHhcCC
Confidence 678888999999999988653
No 249
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.99 E-value=0.0028 Score=64.18 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=62.2
Q ss_pred CeEeecccCCcHHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HcCCce-EEEEecCCCCCccccCCCCCCEEEEC
Q 011002 180 ERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLH-RMGVTN-TIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~-lA~l~~~~g~V~AvDis~~rl~~l~~nl~-r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
.+|+=+||||=-.|.. |+........|+++|+++.+.+.+++-+. .+|+.. +.+..+|+......+ ..||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEEh
Confidence 4999999999777654 55454444689999999999999999888 667654 889999987765444 689999984
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
+- -|. + ...-.++|.+..+.+ +||..|+|=
T Consensus 200 al---Vg~-----------~-------~e~K~~Il~~l~~~m----~~ga~l~~R 229 (276)
T PF03059_consen 200 AL---VGM-----------D-------AEPKEEILEHLAKHM----APGARLVVR 229 (276)
T ss_dssp TT----S----------------------SHHHHHHHHHHHS-----TTSEEEEE
T ss_pred hh---ccc-----------c-------cchHHHHHHHHHhhC----CCCcEEEEe
Confidence 32 010 0 001235788888876 999988874
No 250
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.99 E-value=0.003 Score=64.41 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=70.5
Q ss_pred CeEeecccCCcHHH----HHHHHHcCC---CcEEEEEeCCHHHHHHHHHHH--------------HHc---------C--
Q 011002 180 ERVIDMAAAPGGKT----TYIAALMKN---TGLIYANEMKASRLKSLTANL--------------HRM---------G-- 227 (496)
Q Consensus 180 ~~VLDlcAGpGgkt----l~lA~l~~~---~g~V~AvDis~~rl~~l~~nl--------------~r~---------g-- 227 (496)
-+||..||++|-=. +.+.+.++. .-.|+|.|+|+..++.+++.+ .++ |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 69999999999633 334443322 247999999999999988752 010 1
Q ss_pred -----C-ceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011002 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~ 301 (496)
+ ..|.+...|....+.. ..+.||+|+|- + --+..-...|.+++....+.|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cR-----------N---------vliyF~~~~~~~vl~~l~~~L--- 252 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCR-----------N---------VMIYFDKTTQERILRRFVPLL--- 252 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCc-cCCCcceeeHh-----------h---------HHhcCCHHHHHHHHHHHHHHh---
Confidence 1 2366777777653321 13789999971 0 001112345778888888887
Q ss_pred CCCCcEEEEEe
Q 011002 302 SKSGGYIVYST 312 (496)
Q Consensus 302 lkpGG~LVYST 312 (496)
+|||+|+...
T Consensus 253 -~pgG~L~lG~ 262 (287)
T PRK10611 253 -KPDGLLFAGH 262 (287)
T ss_pred -CCCcEEEEeC
Confidence 9999998765
No 251
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.98 E-value=0.0008 Score=64.86 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred CCCeEeecccCCcHHH----HHHHHHcCC----CcEEEEEeCCHHHHHHHHHH--------------HHHc-----C---
Q 011002 178 EKERVIDMAAAPGGKT----TYIAALMKN----TGLIYANEMKASRLKSLTAN--------------LHRM-----G--- 227 (496)
Q Consensus 178 ~g~~VLDlcAGpGgkt----l~lA~l~~~----~g~V~AvDis~~rl~~l~~n--------------l~r~-----g--- 227 (496)
+.-+||.+||++|-=+ +.+.+.... .-.|+|.|+|+..++.+++- +.++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999633 334442221 23899999999999988752 1221 1
Q ss_pred -C-----ceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011002 228 -V-----TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -~-----~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~ 301 (496)
+ .+|.+...|..+.+.. .+.||+|+| |+-- +.--...|.+++....+.|
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~--~~~fD~I~C-----------RNVl---------IYF~~~~~~~vl~~l~~~L--- 165 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP--FGRFDLIFC-----------RNVL---------IYFDPETQQRVLRRLHRSL--- 165 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE------------SSG---------GGS-HHHHHHHHHHHGGGE---
T ss_pred eEChHHcCceEEEecccCCCCcc--cCCccEEEe-----------cCEE---------EEeCHHHHHHHHHHHHHHc---
Confidence 1 2478888888773222 378999998 2211 1122355777888888886
Q ss_pred CCCCcEEEEEeCCC
Q 011002 302 SKSGGYIVYSTCSI 315 (496)
Q Consensus 302 lkpGG~LVYSTCSl 315 (496)
+|||+|+....-.
T Consensus 166 -~pgG~L~lG~sE~ 178 (196)
T PF01739_consen 166 -KPGGYLFLGHSES 178 (196)
T ss_dssp -EEEEEEEE-TT--
T ss_pred -CCCCEEEEecCcc
Confidence 9999999875543
No 252
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.0074 Score=61.97 Aligned_cols=104 Identities=30% Similarity=0.376 Sum_probs=72.9
Q ss_pred cCCCCCCeEeecccCCcHH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC--CCC----ccccC
Q 011002 174 LAPQEKERVIDMAAAPGGK-TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG--NEL----PKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgk-tl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~--~~l----~~~~~ 246 (496)
..+++|.+||=+||||=|. |...|+.|+ ...|+.+|+++.|++.+++ +|.+.+....... ..+ ...+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc
Confidence 3578999999999999554 555566665 5799999999999998876 7887655443322 111 11122
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
...||.++- |||... -++.|+..+ +.||++|..-|-
T Consensus 240 ~~~~d~~~d---CsG~~~-------------------------~~~aai~a~----r~gGt~vlvg~g 275 (354)
T KOG0024|consen 240 KKQPDVTFD---CSGAEV-------------------------TIRAAIKAT----RSGGTVVLVGMG 275 (354)
T ss_pred ccCCCeEEE---ccCchH-------------------------HHHHHHHHh----ccCCEEEEeccC
Confidence 245999986 888753 256677776 999998887654
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.76 E-value=0.036 Score=54.15 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=96.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
..+.+++|+||=-|..+.++...-. ...++|.|+++.-++.+.+|+.+.++.. +.+..+|+...- .....+|.|++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l--~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL--ELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc--CccCCcCEEEE
Confidence 4567799999999999998877543 3589999999999999999999999854 888999984432 22347999887
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEE
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~l 335 (496)
.|.| ..+-.+||....+.+ +.--++| +.|--++.-+..+|..+++.+
T Consensus 92 ----AGMG--------------------G~lI~~ILee~~~~l----~~~~rlI-----LQPn~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 92 ----AGMG--------------------GTLIREILEEGKEKL----KGVERLI-----LQPNIHTYELREWLSANSYEI 138 (226)
T ss_pred ----eCCc--------------------HHHHHHHHHHhhhhh----cCcceEE-----ECCCCCHHHHHHHHHhCCcee
Confidence 3444 234567888888876 3223555 478889999999999988877
Q ss_pred ee
Q 011002 336 VP 337 (496)
Q Consensus 336 v~ 337 (496)
+.
T Consensus 139 ~~ 140 (226)
T COG2384 139 KA 140 (226)
T ss_pred ee
Confidence 64
No 254
>PRK00536 speE spermidine synthase; Provisional
Probab=96.76 E-value=0.021 Score=57.53 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=75.3
Q ss_pred HHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCCccccC
Q 011002 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLG 246 (496)
Q Consensus 171 v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~l~~~~~ 246 (496)
++...+. ..+||=+|.|-||..-.+... + ..|+.|||++..++.+++-+-.+ +. +++.++.. +.. ..
T Consensus 66 pl~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~-~~ 136 (262)
T PRK00536 66 GGCTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLD-LD 136 (262)
T ss_pred HHhhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhh-cc
Confidence 3344444 479999999999998877765 2 48999999999999999855443 23 33665542 211 11
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHH
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDY 326 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~ 326 (496)
.+.||+|++|-. .+ ......+.+.| +|||.+|.-+-|... ...++..
T Consensus 137 ~~~fDVIIvDs~----------------~~-----------~~fy~~~~~~L----~~~Gi~v~Qs~sp~~--~~~~~~~ 183 (262)
T PRK00536 137 IKKYDLIICLQE----------------PD-----------IHKIDGLKRML----KEDGVFISVAKHPLL--EHVSMQN 183 (262)
T ss_pred CCcCCEEEEcCC----------------CC-----------hHHHHHHHHhc----CCCcEEEECCCCccc--CHHHHHH
Confidence 268999999932 01 11234444554 999999886555543 3444554
Q ss_pred HHH
Q 011002 327 ALK 329 (496)
Q Consensus 327 ~L~ 329 (496)
+.+
T Consensus 184 i~~ 186 (262)
T PRK00536 184 ALK 186 (262)
T ss_pred HHH
Confidence 444
No 255
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.75 E-value=0.039 Score=46.26 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=68.5
Q ss_pred EeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC--CccccCC-CCCCEEEECCC
Q 011002 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE--LPKVLGL-NTVDRVLLDAP 258 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~--l~~~~~~-~~FD~VLlDpP 258 (496)
|||+|||+|..+ .++........++++|+++.++..........+...+.+...|... ++ +.. ..||.+.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeeeee
Confidence 999999999987 5555543323789999999999985555443222215666677654 33 222 36898843221
Q ss_pred CCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCC
Q 011002 259 CSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN 320 (496)
Q Consensus 259 CSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eEN 320 (496)
+.. .. ...++..+.+.+ +|+|.+++++........
T Consensus 129 ~~~-------------~~----------~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 129 LHL-------------LP----------PAKALRELLRVL----KPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred hhc-------------CC----------HHHHHHHHHHhc----CCCcEEEEEeccCCCCcc
Confidence 100 00 234566666766 999999999887655443
No 256
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.74 E-value=0.0067 Score=61.28 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=71.4
Q ss_pred CCeEeecccCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHH------H---------HHc------C--
Q 011002 179 KERVIDMAAAPGG----KTTYIAALMKN----TGLIYANEMKASRLKSLTAN------L---------HRM------G-- 227 (496)
Q Consensus 179 g~~VLDlcAGpGg----ktl~lA~l~~~----~g~V~AvDis~~rl~~l~~n------l---------~r~------g-- 227 (496)
.-+||-+||++|- .++.|.+.++. .-.|+|.|||...|+.++.- + .++ |
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4589999999995 55555666542 45899999999999888742 1 010 1
Q ss_pred -----C-ceEEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011002 228 -----V-TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDAN 301 (496)
Q Consensus 228 -----~-~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~ 301 (496)
+ ..|.+...|...-+. ..+.||+|+| ||-- |.--...|.+++..-...|
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfC-----------RNVL---------IYFd~~~q~~il~~f~~~L--- 231 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFC-----------RNVL---------IYFDEETQERILRRFADSL--- 231 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc--ccCCCCEEEE-----------cceE---------EeeCHHHHHHHHHHHHHHh---
Confidence 0 135555556544332 2367999998 2211 1223467889999998887
Q ss_pred CCCCcEEEEEe
Q 011002 302 SKSGGYIVYST 312 (496)
Q Consensus 302 lkpGG~LVYST 312 (496)
+|||+|+.-.
T Consensus 232 -~~gG~LflG~ 241 (268)
T COG1352 232 -KPGGLLFLGH 241 (268)
T ss_pred -CCCCEEEEcc
Confidence 9999998753
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0038 Score=61.53 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=51.0
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
-+|..|||+||.+||+|-.+.+. +...|+|+|+....+..--++ ...-+.+-..|++.+....-.+..|.|++|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPEDFTEKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHHcccCCCeEEEE
Confidence 36899999999999999988886 346999999987655432111 111133445566665322212478999998
Q ss_pred CC
Q 011002 257 AP 258 (496)
Q Consensus 257 pP 258 (496)
..
T Consensus 152 vS 153 (245)
T COG1189 152 VS 153 (245)
T ss_pred ee
Confidence 75
No 258
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.62 E-value=0.0045 Score=60.40 Aligned_cols=133 Identities=15% Similarity=0.065 Sum_probs=76.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
...++||+|||-|-.|-++..- ---.|-.+|..+..++.+++.+...+..-..+.+.-..++... ..+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW~-- 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIWI-- 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEE--
T ss_pred CcceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEEe--
Confidence 4578999999999999765332 2358999999999999999776552222245555555555322 268999987
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe-CCCCC-----cC------CHHHHH
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST-CSIMV-----TE------NEAVID 325 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST-CSl~~-----eE------NE~vV~ 325 (496)
..+....+..++ .++|.++...| +|||.||.=. ||-.. +| ..+...
T Consensus 129 -----------QW~lghLTD~dl-------v~fL~RCk~~L----~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 129 -----------QWCLGHLTDEDL-------VAFLKRCKQAL----KPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp -----------ES-GGGS-HHHH-------HHHHHHHHHHE----EEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred -----------hHhhccCCHHHH-------HHHHHHHHHhC----cCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 111112343443 34577777776 9999988531 22111 01 234555
Q ss_pred HHHHhCCcEEeec
Q 011002 326 YALKKRDVKLVPC 338 (496)
Q Consensus 326 ~~L~~~~~~lv~~ 338 (496)
.+.++.+++++..
T Consensus 187 ~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 187 ELFKQAGLRLVKE 199 (218)
T ss_dssp HHHHHCT-EEEEE
T ss_pred HHHHHcCCEEEEe
Confidence 5666667777654
No 259
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.62 E-value=0.0062 Score=55.25 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHcC--C-ceEEEEecCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMK---NTGLIYANEMKASRLKSLTANLHRMG--V-TNTIVCNYDG 238 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~---~~g~V~AvDis~~rl~~l~~nl~r~g--~-~nv~v~~~D~ 238 (496)
.+..+|+|+|||-|..+..++.++. ..-.|+++|.++..++.+....+.++ . .++.+...+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 6788999999999999999999552 34689999999999999999999988 4 3455554443
No 260
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.0032 Score=61.06 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=54.6
Q ss_pred cceEEEecCcchhHHHhc--CCCCCCeEeecccCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCceE
Q 011002 157 AGFYMLQSASSFLPVMAL--APQEKERVIDMAAAPGGKTTYIAALM---KNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 157 ~G~~~iQd~sS~l~v~~L--~~~~g~~VLDlcAGpGgktl~lA~l~---~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv 231 (496)
.|.-++|.+.-+++...| ..+ .+.|+++|.+-||-++..|.++ ++.+.|+++|++-..........+-+. +.|
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~-~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMS-PRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhcccc-Cce
Confidence 366777877655543332 233 3799999999999999887654 456899999996544433322223332 569
Q ss_pred EEEecCCCCCcccc------CCCCCCEEEECCC
Q 011002 232 IVCNYDGNELPKVL------GLNTVDRVLLDAP 258 (496)
Q Consensus 232 ~v~~~D~~~l~~~~------~~~~FD~VLlDpP 258 (496)
.++.+|..+..... ......+|+.|+-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSS 120 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCC
Confidence 99999987653211 1234568888864
No 261
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.42 E-value=0.03 Score=54.57 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHc------------------------------
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM------------------------------ 226 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~------------------------------ 226 (496)
..-+++|-|||.|+..+.+.-+-++. ..|+|-||++..++.++.|+..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34589999999999999887765432 26999999999999988887532
Q ss_pred ------------CCceEEEEecCCCCCcc---ccCCCCCCEEEECCCCCC
Q 011002 227 ------------GVTNTIVCNYDGNELPK---VLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 227 ------------g~~nv~v~~~D~~~l~~---~~~~~~FD~VLlDpPCSg 261 (496)
|.....+..+|..+... .......|+|+.|.|+-.
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~ 180 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGE 180 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCC
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcc
Confidence 12235566777766311 111235799999999743
No 262
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.34 E-value=0.026 Score=56.62 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGV---------------------------- 228 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~---------------------------- 228 (496)
..|.++||+||||--.-+ |+ ....--.|+..|..+.-.+.+++-++.-|.
T Consensus 55 ~~g~~llDiGsGPtiy~~-ls-a~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQL-LS-ACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGG-TT-GGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhh-hh-HHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 358899999999943321 21 112223799999999888766665443211
Q ss_pred ceE-EEEecCCCCCccccC----CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011002 229 TNT-IVCNYDGNELPKVLG----LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK 303 (496)
Q Consensus 229 ~nv-~v~~~D~~~l~~~~~----~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lk 303 (496)
..| .++..|....+...+ +..||.|+. ..-.+.+..-....+..+.+...+| |
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y~~al~ni~~lL----k 190 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS------------------SFCLESACKDLDEYRRALRNISSLL----K 190 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE------------------ESSHHHH-SSHHHHHHHHHHHHTTE----E
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhh------------------hHHHHHHcCCHHHHHHHHHHHHHHc----C
Confidence 013 366677766543321 135998875 1222222222234455677777776 9
Q ss_pred CCcEEEEEeCC------C------CCcCCHHHHHHHHHhCCcEEeec
Q 011002 304 SGGYIVYSTCS------I------MVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 304 pGG~LVYSTCS------l------~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
|||+|++...- + ..-=|++.|..+|++.++.++..
T Consensus 191 pGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 191 PGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred CCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 99999976321 0 01237899999999988877765
No 263
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.31 E-value=0.013 Score=58.97 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC-ccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL-PKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l-~~~~~~~~FD~VLl 255 (496)
..|..|+=|| ---.|...+.+.+-.-.|..+||+...+....+-++.+|++|+..+..|.++. |..+ ...||+.+.
T Consensus 151 L~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeec
Confidence 4578898887 34444444445444458999999999999999999999999999999999875 4433 378999999
Q ss_pred CCCCCC
Q 011002 256 DAPCSG 261 (496)
Q Consensus 256 DpPCSg 261 (496)
|||.+-
T Consensus 228 DPpeTi 233 (354)
T COG1568 228 DPPETI 233 (354)
T ss_pred CchhhH
Confidence 999543
No 264
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.0064 Score=62.72 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=57.4
Q ss_pred EeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCCCC
Q 011002 182 VIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG 261 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg 261 (496)
|+|++||.||.++-+.+. +--.|.|+|+++.+++..+.|... .+...|..++.... ...+|+++.-|||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~------~~~~~Di~~~~~~~-~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN------KVPFGDITKISPSD-IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC------CCCccChhhhhhhh-CCCcCEEEecCCCcc
Confidence 699999999999887654 223678999999999999988632 23456766653211 146999999999998
Q ss_pred CCcccCC
Q 011002 262 TGVISKD 268 (496)
Q Consensus 262 ~Gvi~r~ 268 (496)
.-...+.
T Consensus 72 fS~ag~~ 78 (315)
T TIGR00675 72 FSIAGKR 78 (315)
T ss_pred cchhccc
Confidence 8765543
No 265
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.0088 Score=62.02 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=60.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC-CCCEEEECC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN-TVDRVLLDA 257 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~-~FD~VLlDp 257 (496)
..+|+|+|||.||..+-+...- --.+.|+|+++.+++..+.|... ..++..|...+....-.. .+|+|+--|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCC
Confidence 3579999999999997776542 24799999999999999988754 334455655442211012 799999999
Q ss_pred CCCCCCcccCC
Q 011002 258 PCSGTGVISKD 268 (496)
Q Consensus 258 PCSg~Gvi~r~ 268 (496)
||-+.-+..++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99988777655
No 266
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.16 E-value=0.021 Score=57.75 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=39.5
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM 226 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~ 226 (496)
..+|||+|||||.-+..+....+....++++|.|+.+++..+..+...
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 358999999999877777777775568999999999999888766554
No 267
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.10 E-value=0.047 Score=53.28 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=74.1
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
..|.+||.+|-|-|...+.+.+.-+ ..-+-++.++..+++++.+.-+- -.||+++.+-=.+....++++.||-|+-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEee
Confidence 5799999999999999998876532 45566899999998877654321 24677765532222222345789999998
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE 321 (496)
.= .-.-+++ +.+..++.++| ||+|.+-| |-.+...|-
T Consensus 177 Ty---------------~e~yEdl-------~~~hqh~~rLL----kP~gv~Sy--fNg~~~~~~ 213 (271)
T KOG1709|consen 177 TY---------------SELYEDL-------RHFHQHVVRLL----KPEGVFSY--FNGLGADNL 213 (271)
T ss_pred ch---------------hhHHHHH-------HHHHHHHhhhc----CCCceEEE--ecCcccchh
Confidence 51 0111222 34455788876 99998777 555544443
No 268
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.01 E-value=0.039 Score=53.08 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=80.6
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHH------HHHHHHHHHHcCCceEEEEecCCCCCcccc
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASR------LKSLTANLHRMGVTNTIVCNYDGNELPKVL 245 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~r------l~~l~~nl~r~g~~nv~v~~~D~~~l~~~~ 245 (496)
.+.++++|.+|+|+--|.|.+|-.++..++.+|.|+++=..... -..+..-...-+..|+.++..+...+.
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--- 118 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--- 118 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---
Confidence 34567899999999999999999999999999999987443321 022222222233345444433333222
Q ss_pred CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCC--------
Q 011002 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMV-------- 317 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~-------- 317 (496)
..+..|++... +..-. .+...+. ...-.+....+.+.| ||||.++.-.-...+
T Consensus 119 ~pq~~d~~~~~---~~yhd----------mh~k~i~--~~~A~~vna~vf~~L----KPGGv~~V~dH~a~pG~~~~dt~ 179 (238)
T COG4798 119 APQKLDLVPTA---QNYHD----------MHNKNIH--PATAAKVNAAVFKAL----KPGGVYLVEDHRADPGSGLSDTI 179 (238)
T ss_pred CCCcccccccc---hhhhh----------hhccccC--cchHHHHHHHHHHhc----CCCcEEEEEeccccCCCChhhhh
Confidence 11333333210 00000 0000000 111123455666666 999998876544333
Q ss_pred ---cCCHHHHHHHHHhCCcEEee
Q 011002 318 ---TENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 318 ---eENE~vV~~~L~~~~~~lv~ 337 (496)
.-++++|.......+|+|.-
T Consensus 180 ~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 180 TLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hhcccChHHHHHHHHhhcceeee
Confidence 34677777777777888764
No 269
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.97 E-value=0.003 Score=66.65 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=56.5
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEEecCCCCCc
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT--NTIVCNYDGNELP 242 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~--nv~v~~~D~~~l~ 242 (496)
.++|+.|-|+|||-|-+++.++.. .+.|+|+|.+++.++.|..|+..+-+. +|.+.+.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 468999999999999999887764 389999999999999999999988874 4899999998764
No 270
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.90 E-value=0.0066 Score=61.64 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCCeEeecccCCcHHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTT-YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl-~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.|+.|+||.||-|.+|+ .+... +...|+|+|.+|..++.|+++++.+++.. ..++.+|-+.... ....|+|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchheee
Confidence 47999999999999998 44433 34689999999999999999999998754 4566778765432 268999977
Q ss_pred C
Q 011002 256 D 256 (496)
Q Consensus 256 D 256 (496)
-
T Consensus 269 G 269 (351)
T KOG1227|consen 269 G 269 (351)
T ss_pred c
Confidence 3
No 271
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.82 E-value=0.029 Score=61.02 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=58.3
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc--------------
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------------- 244 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-------------- 244 (496)
.-+++|++||.||.++-+-.. + --.|.++|+++.+.+..+.|... ..+..+++.|...+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 568999999999999887553 2 23789999999999999888521 11233444555554210
Q ss_pred -cCCCCCCEEEECCCCCCCCccc
Q 011002 245 -LGLNTVDRVLLDAPCSGTGVIS 266 (496)
Q Consensus 245 -~~~~~FD~VLlDpPCSg~Gvi~ 266 (496)
.....+|+++.-|||.+..+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0013689999999998876554
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.60 E-value=0.068 Score=55.71 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=65.1
Q ss_pred CCCCCCeEeecccC-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEE
Q 011002 175 APQEKERVIDMAAA-PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 175 ~~~~g~~VLDlcAG-pGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
+..||++|+=.|+| .|..++.+|..|+ ..|+|+|.+++.++.++ ++|.+.+.... |........ +.||.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~----~lGAd~~i~~~-~~~~~~~~~--~~~d~i 233 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAK----KLGADHVINSS-DSDALEAVK--EIADAI 233 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHH----HhCCcEEEEcC-CchhhHHhH--hhCcEE
Confidence 56899999998887 3445566676664 69999999999887654 56776544333 443333322 349999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|.=+| . .-+..++++| ++||++|..
T Consensus 234 i~tv~-~----------------------------~~~~~~l~~l----~~~G~~v~v 258 (339)
T COG1064 234 IDTVG-P----------------------------ATLEPSLKAL----RRGGTLVLV 258 (339)
T ss_pred EECCC-h----------------------------hhHHHHHHHH----hcCCEEEEE
Confidence 98443 1 1267777887 999999875
No 273
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.54 E-value=0.1 Score=52.37 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=60.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAP 258 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpP 258 (496)
...|-|+|||-+-.+. . ..-.|+++|+.+ -|-.++..|++..|. .+++.|++++
T Consensus 181 ~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl--~d~svDvaV~--- 234 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----S--ERHKVHSFDLVA---------------VNERVIACDMRNVPL--EDESVDVAVF--- 234 (325)
T ss_pred ceEEEecccchhhhhh----c--cccceeeeeeec---------------CCCceeeccccCCcC--ccCcccEEEe---
Confidence 4678999999986654 2 224699999764 234566678888874 4589999987
Q ss_pred C-CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 259 C-SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 259 C-Sg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
| |-.|+ .-..++..|.++| ++||.|....-+
T Consensus 235 CLSLMgt---------------------n~~df~kEa~RiL----k~gG~l~IAEv~ 266 (325)
T KOG3045|consen 235 CLSLMGT---------------------NLADFIKEANRIL----KPGGLLYIAEVK 266 (325)
T ss_pred eHhhhcc---------------------cHHHHHHHHHHHh----ccCceEEEEehh
Confidence 5 22232 2245688999987 999999877654
No 274
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.50 E-value=0.13 Score=53.82 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH--HcC---C--ceEEEEecCCCCCccccCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH--RMG---V--TNTIVCNYDGNELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~--r~g---~--~nv~v~~~D~~~l~~~~~~~~ 249 (496)
..-++||-+|.|-|--.-.+... +.-+.|+-+|++|.+++.++++.. ..+ . +.+.+++.|+..+...- ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-ccc
Confidence 45678999999988666555443 445799999999999999995533 222 2 35899999998875433 368
Q ss_pred CCEEEECCC
Q 011002 250 VDRVLLDAP 258 (496)
Q Consensus 250 FD~VLlDpP 258 (496)
||.|++|-|
T Consensus 366 fD~vIVDl~ 374 (508)
T COG4262 366 FDVVIVDLP 374 (508)
T ss_pred ccEEEEeCC
Confidence 999999987
No 275
>PHA01634 hypothetical protein
Probab=95.42 E-value=0.065 Score=48.25 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
.|.+|+|+||+.|..+++.+-. +...|+|++.++...+.+++|++-+.+-+--+... .++..+ +.||+..+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~~Y--~~~Di~~iD- 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNGEY--EDVDIFVMD- 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---cccccC--CCcceEEEE-
Confidence 4889999999999999887654 45699999999999999999998875422111111 344334 789999988
Q ss_pred CCCC
Q 011002 258 PCSG 261 (496)
Q Consensus 258 PCSg 261 (496)
|-|
T Consensus 100 -CeG 102 (156)
T PHA01634 100 -CEG 102 (156)
T ss_pred -ccc
Confidence 544
No 276
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.27 E-value=0.016 Score=62.73 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=58.0
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEE---EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~A---vDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
..+||+|||.|+++.+|..+ + -.++. .|..+..++.+ -+-|+..+.-+.+ ...+| ++.+.||+|=
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~-V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~~-s~rLP--fp~~~fDmvH-- 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--N-VTTMSFAPNDEHEAQVQFA----LERGVPAMIGVLG-SQRLP--FPSNAFDMVH-- 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--C-ceEEEcccccCCchhhhhh----hhcCcchhhhhhc-ccccc--CCccchhhhh--
Confidence 46999999999999888765 2 12222 24444333332 2335543222212 23455 3458899985
Q ss_pred CCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 257 APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 257 pPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
||...+ .|...+- -+|...-++ |+|||++|+|.--+.
T Consensus 187 --csrc~i---------~W~~~~g--------~~l~evdRv----LRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 --CSRCLI---------PWHPNDG--------FLLFEVDRV----LRPGGYFVLSGPPVY 223 (506)
T ss_pred --cccccc---------cchhccc--------ceeehhhhh----hccCceEEecCCccc
Confidence 555443 1322221 134444455 499999999987776
No 277
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.91 E-value=0.2 Score=52.20 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=74.5
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPC 259 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPC 259 (496)
...+|+|+|.|..+-++...++. |-+++.+..-+-....++. .|+ ..+-+|+..- . ..-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~-~gV---~~v~gdmfq~---~--P~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLA-PGV---EHVAGDMFQD---T--PKGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhc-CCc---ceeccccccc---C--CCcCeEEE----
Confidence 78999999999999998887653 8888999888887777776 664 4455666432 1 24568887
Q ss_pred CCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 260 SGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 260 Sg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
..+...|+.++. .++|.++++.| +|||.|+...|-+.
T Consensus 243 ---------kWiLhdwtDedc-------vkiLknC~~sL----~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 243 ---------KWILHDWTDEDC-------VKILKNCKKSL----PPGGKIIVVENVTP 279 (342)
T ss_pred ---------EeecccCChHHH-------HHHHHHHHHhC----CCCCEEEEEeccCC
Confidence 222335676665 45799999997 99999999988544
No 278
>PRK11524 putative methyltransferase; Provisional
Probab=94.81 E-value=0.051 Score=55.16 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=45.7
Q ss_pred ceEEEEecCCCCCccccCCCCCCEEEECCCCCC-CCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 229 TNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 229 ~nv~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg-~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
.+..++++|...+...++.++||+|++|||+-. .+.....+ .+... ........++..+.++| ||||.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~----~~~~~---~~~~~l~~~l~~~~rvL----K~~G~ 75 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE----AWKED---LFIDWLYEWIDECHRVL----KKQGT 75 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc----cccHH---HHHHHHHHHHHHHHHHh----CCCcE
Confidence 345688899887654455679999999999853 11111111 11111 12222356777777776 99999
Q ss_pred EEEEeCCC
Q 011002 308 IVYSTCSI 315 (496)
Q Consensus 308 LVYSTCSl 315 (496)
|+.. |+.
T Consensus 76 i~i~-~~~ 82 (284)
T PRK11524 76 MYIM-NST 82 (284)
T ss_pred EEEE-cCc
Confidence 9874 554
No 279
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.67 E-value=0.18 Score=57.08 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=85.3
Q ss_pred chhHHHhcC-CCCCCeEeecccCCcHHHHHHHHHcC------C-----CcEEEEEeCCH---HHHHHHH----------H
Q 011002 167 SFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMK------N-----TGLIYANEMKA---SRLKSLT----------A 221 (496)
Q Consensus 167 S~l~v~~L~-~~~g~~VLDlcAGpGgktl~lA~l~~------~-----~g~V~AvDis~---~rl~~l~----------~ 221 (496)
+.|+..+.. ..+.-+|||+|=|+|.-.+.+.+... + .-.++++|..+ ..+..+- +
T Consensus 45 ~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~ 124 (662)
T PRK01747 45 NGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAE 124 (662)
T ss_pred CCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHH
Confidence 345544432 23346899999999998887776551 1 23789999755 2222221 1
Q ss_pred HHH-H-----cCCc---------eEEEEecCCCCCccccCCCCCCEEEECC--CCCCCCcccCCchhhccCCHHHHHHHH
Q 011002 222 NLH-R-----MGVT---------NTIVCNYDGNELPKVLGLNTVDRVLLDA--PCSGTGVISKDESVKTSKSLEDIQKCS 284 (496)
Q Consensus 222 nl~-r-----~g~~---------nv~v~~~D~~~l~~~~~~~~FD~VLlDp--PCSg~Gvi~r~p~i~~~~s~~~i~~l~ 284 (496)
.+. . .|+. ++.++.+|++.....+. ..||.|++|+ | .++|++ |+
T Consensus 125 ~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP-------~~np~~---W~-------- 185 (662)
T PRK01747 125 QLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAP-------AKNPDM---WS-------- 185 (662)
T ss_pred HHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCC-------ccChhh---cc--------
Confidence 111 1 1331 24466788876433221 4699999995 5 467776 33
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 011002 285 YLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 285 ~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
.+++....+++ +|||+++-.||+ ..|...|...+|++...
T Consensus 186 ---~~~~~~l~~~~----~~~~~~~t~t~a-------~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 186 ---PNLFNALARLA----RPGATLATFTSA-------GFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---HHHHHHHHHHh----CCCCEEEEeehH-------HHHHHHHHHcCCeeeec
Confidence 23455556665 999999855544 46788888888887643
No 280
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.42 E-value=0.33 Score=49.98 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred CCCCCCeEeecccCCcHHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEE-ecCCCCCccccCCCCC
Q 011002 175 APQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC-NYDGNELPKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~---lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~-~~D~~~l~~~~~~~~F 250 (496)
...+|++||=.|| |+.++. +|..++ ...|+++|.++.+++.++ .+|.+.+.-. ..|...+.. ..+.|
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~--~~g~~ 236 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGADKLVNPQNDDLDHYKA--EKGYF 236 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCCcEEecCCcccHHHHhc--cCCCC
Confidence 3557999998876 455544 444442 236999999999987664 4787543211 111111111 11359
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
|+||- |+|.. ..+..++++| ++||++|....+
T Consensus 237 D~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G~~ 268 (343)
T PRK09880 237 DVSFE---VSGHP-------------------------SSINTCLEVT----RAKGVMVQVGMG 268 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEccC
Confidence 98875 44431 1255677776 999999876543
No 281
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.30 E-value=0.26 Score=46.19 Aligned_cols=120 Identities=23% Similarity=0.233 Sum_probs=71.9
Q ss_pred cchhHHHhcC-CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC---
Q 011002 166 SSFLPVMALA-PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL--- 241 (496)
Q Consensus 166 sS~l~v~~L~-~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l--- 241 (496)
+..|+-.++. ..++.+|+=+||=+-...+. ........++-.|++..- +.+|-+ .++..|....
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF--------~~~~~~--~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRF--------EQFGGD--EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchH--------HhcCCc--ceEECCCCChhhh
Confidence 3344444443 34567898888765544432 222344678889998642 233322 4667777653
Q ss_pred ccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCH
Q 011002 242 PKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE 321 (496)
Q Consensus 242 ~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE 321 (496)
+..+ .+.||+|++|||.- +.+ .+.. ...+++.| +++++.|+.+ ++++++
T Consensus 80 ~~~l-~~~~d~vv~DPPFl---------------~~e-------c~~k-~a~ti~~L---~k~~~kii~~----Tg~~~~ 128 (162)
T PF10237_consen 80 PEEL-KGKFDVVVIDPPFL---------------SEE-------CLTK-TAETIRLL---LKPGGKIILC----TGEEME 128 (162)
T ss_pred hhhc-CCCceEEEECCCCC---------------CHH-------HHHH-HHHHHHHH---hCccceEEEe----cHHHHH
Confidence 3333 37899999999951 111 1111 23444555 4889999985 357888
Q ss_pred HHHHHHH
Q 011002 322 AVIDYAL 328 (496)
Q Consensus 322 ~vV~~~L 328 (496)
..+...|
T Consensus 129 ~~~~~ll 135 (162)
T PF10237_consen 129 ELIKKLL 135 (162)
T ss_pred HHHHHHh
Confidence 8888877
No 282
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=94.11 E-value=0.022 Score=55.50 Aligned_cols=93 Identities=19% Similarity=0.135 Sum_probs=64.9
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-----
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV----- 244 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~----- 244 (496)
++..|.|.+|...+||--|.||.|..|.+.-. ...++|.|.+|-+-+.+......+=-..+..+.+....++..
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 45778899999999999999999999988765 368999999998877776655332111111122222222211
Q ss_pred cCCCCCCEEEECCCCCCCC
Q 011002 245 LGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 245 ~~~~~FD~VLlDpPCSg~G 263 (496)
+...+||-||+|--||..-
T Consensus 114 l~~~~vDGiLmDlGcSSMQ 132 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQ 132 (303)
T ss_pred CCcCCcceEEeecCccccc
Confidence 1237899999999999764
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.08 E-value=0.11 Score=55.51 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=50.3
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNEL 241 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l 241 (496)
-.|||+|+|+|-.++..+..+. ..|+|+++-+.|.+.++.-++++|.. +|.+++.-.++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 3599999999999987777653 47999999999999999999999985 488887655544
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.85 E-value=0.1 Score=54.49 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=65.0
Q ss_pred CCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC-CCC-CccccCCCCCCEE
Q 011002 177 QEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GNE-LPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D-~~~-l~~~~~~~~FD~V 253 (496)
.++.+|+=+|||| |-.+..++..++ ...|+++|.++.|++.+++.. |...+.....+ ... .........||.|
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 4555999999999 555566666654 479999999999999887632 32212111111 000 0011112379999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+- |||.. ..+..|++++ ++||++++..-.
T Consensus 243 ie---~~G~~-------------------------~~~~~ai~~~----r~gG~v~~vGv~ 271 (350)
T COG1063 243 IE---AVGSP-------------------------PALDQALEAL----RPGGTVVVVGVY 271 (350)
T ss_pred EE---CCCCH-------------------------HHHHHHHHHh----cCCCEEEEEecc
Confidence 87 77732 1377788887 999999986544
No 285
>PRK11524 putative methyltransferase; Provisional
Probab=93.45 E-value=0.15 Score=51.71 Aligned_cols=46 Identities=15% Similarity=0.015 Sum_probs=37.6
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
.+|+.|||-++|+|..++. |..++ -..+|+|++++.++.++.++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~A-A~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAV-AKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHH-HHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999999966554 44443 4799999999999999999854
No 286
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.42 E-value=0.11 Score=51.19 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCce-EEEE-ecCCCCC-ccccC-CCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM-GVTN-TIVC-NYDGNEL-PKVLG-LNTVD 251 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~-g~~n-v~v~-~~D~~~l-~~~~~-~~~FD 251 (496)
.++-++||+|.|.--.--.|...+- +-..++-|+++..+..++.++..+ ++.+ |.+. +.|...+ +.... .+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 4567899999886554444433332 237899999999999999999988 7765 5543 3343322 22222 47899
Q ss_pred EEEECCCCCCC
Q 011002 252 RVLLDAPCSGT 262 (496)
Q Consensus 252 ~VLlDpPCSg~ 262 (496)
.+|||||.-.+
T Consensus 156 ~tlCNPPFh~s 166 (292)
T COG3129 156 ATLCNPPFHDS 166 (292)
T ss_pred eEecCCCcchh
Confidence 99999996543
No 287
>PRK13699 putative methylase; Provisional
Probab=93.38 E-value=0.26 Score=48.51 Aligned_cols=92 Identities=15% Similarity=0.039 Sum_probs=52.1
Q ss_pred EEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 232 IVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 232 ~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.+.++|+.++...++++++|+|+.|||+.- |.-..... ..... .........+.++.++| ||||.++ +
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i-~~~~~~~~---~~~~~---~~~ew~~~~l~E~~RVL----Kpgg~l~-i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLV-GFRDRQGR---TIAGD---KTDEWLQPACNEMYRVL----KKDALMV-S 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCccc-ccccCCCc---ccccc---cHHHHHHHHHHHHHHHc----CCCCEEE-E
Confidence 567888877655566789999999999952 21111000 00000 01122345677777776 9988765 4
Q ss_pred eCCCCCcCCHHHHHHHHHhCCcEEeec
Q 011002 312 TCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 312 TCSl~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
.|+... -..+..++.+.++.+...
T Consensus 71 f~~~~~---~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 71 FYGWNR---VDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred Eecccc---HHHHHHHHHHCCCEEeeE
Confidence 566542 233334456667776543
No 288
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.14 E-value=0.68 Score=47.58 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred cCCCCCCeEeecccCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 174 LAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGg-ktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
..+++|++||=.|+|+-| .+..+|..++ ..|++++.++.+++.+ +.+|.+.+. +.+ ... ...||.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~vi--~~~--~~~----~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAASAG--GAY--DTP----PEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCceec--ccc--ccC----cccceE
Confidence 457889999998864322 2334455443 3699999999987554 558876532 111 111 145887
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
++. |++.| ..+..++++| ++||+++..-
T Consensus 227 ~i~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~~G 254 (329)
T TIGR02822 227 AIL---FAPAG-------------------------GLVPPALEAL----DRGGVLAVAG 254 (329)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----CCCcEEEEEe
Confidence 764 22221 1366777887 9999987643
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.83 E-value=0.39 Score=50.46 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=38.3
Q ss_pred hcCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 011002 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~n 222 (496)
.+.+.+|.+||..|+|+ |..+..+|..++. +.|+++|.++.+++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 34567899999998877 6677778877642 4699999999998877764
No 290
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=92.82 E-value=0.15 Score=53.74 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=76.1
Q ss_pred HhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCC
Q 011002 172 MALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTV 250 (496)
Q Consensus 172 ~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~F 250 (496)
......++..++|++||-|+.+.+++..- ...++++|.+.-.+.+........++.+ -.++..|....| ++.+.|
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~--fedn~f 179 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP--FEDNTF 179 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC--CCcccc
Confidence 33456778899999999999999998874 3579999999999988888888777765 334667776655 345889
Q ss_pred CEEE-ECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 251 DRVL-LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 251 D~VL-lDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
|.|- +|+=|-.- + -..++.+..+.+ +|||+++-
T Consensus 180 d~v~~ld~~~~~~-------------~----------~~~~y~Ei~rv~----kpGG~~i~ 213 (364)
T KOG1269|consen 180 DGVRFLEVVCHAP-------------D----------LEKVYAEIYRVL----KPGGLFIV 213 (364)
T ss_pred CcEEEEeecccCC-------------c----------HHHHHHHHhccc----CCCceEEe
Confidence 9884 34433211 0 122456666665 99998753
No 291
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.61 E-value=0.83 Score=47.16 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCCCCCeEeecccCCcHHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCC
Q 011002 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl---~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
.+++|++||=.||| +.++ .++..+.+...|+++|.++.+++.++. .+.. ... + .+.. ...||
T Consensus 160 ~~~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~--~~~--~--~~~~---~~g~d 224 (341)
T cd08237 160 AHKDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET--YLI--D--DIPE---DLAVD 224 (341)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce--eeh--h--hhhh---ccCCc
Confidence 35789999998875 4444 344432223579999999999988753 3432 111 1 1111 12589
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+|+= |+|... + ...+..+++++ ++||++++.-+
T Consensus 225 ~viD---~~G~~~-----------~-----------~~~~~~~~~~l----~~~G~iv~~G~ 257 (341)
T cd08237 225 HAFE---CVGGRG-----------S-----------QSAINQIIDYI----RPQGTIGLMGV 257 (341)
T ss_pred EEEE---CCCCCc-----------c-----------HHHHHHHHHhC----cCCcEEEEEee
Confidence 8874 555210 0 11366778876 99999987654
No 292
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.29 E-value=0.27 Score=46.79 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTA 221 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~ 221 (496)
-.+|+.|||-+||+|..+. +|..++ -.-+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3579999999999996554 444443 479999999999988763
No 293
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.12 E-value=2 Score=41.38 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.| |.|+.+.+++..+... ..|++++.++..+..+...+...+ .++.++..|..+.... + ..+
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 466777555 5788899888766433 478889999888877777666554 3577788888764211 1 014
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+..+
T Consensus 84 ~id~vi~~a 92 (250)
T PRK12939 84 GLDGLVNNA 92 (250)
T ss_pred CCCEEEECC
Confidence 689999855
No 294
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.05 E-value=2.9 Score=40.68 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=55.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.|.+||=.| |+|+.+..++..+. ....|+..+.++..++.+...+...|. ++.++..|..+.... + ..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467888777 56888888887554 334899999999888887777776653 366777888763211 0 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
..|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 295
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.84 E-value=1.3 Score=43.28 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=54.9
Q ss_pred CCeEeecccCCcH--HHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCC-CCccccCCCCCCEE
Q 011002 179 KERVIDMAAAPGG--KTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGN-ELPKVLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDlcAGpGg--ktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~-~l~~~~~~~~FD~V 253 (496)
-..+++.||+-|. .|+.||..... .|.++++-.+...+....+.+..+|+.+ +.|+.+|.. .+...+ ..+|.+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCEE
Confidence 3568888766433 45555444333 4699999999999999999999999876 688888753 333333 689999
Q ss_pred EECC
Q 011002 254 LLDA 257 (496)
Q Consensus 254 LlDp 257 (496)
|+|-
T Consensus 120 vVDc 123 (218)
T PF07279_consen 120 VVDC 123 (218)
T ss_pred EEeC
Confidence 9984
No 296
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.81 E-value=0.4 Score=41.82 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=60.1
Q ss_pred CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc----cccCCCCCCEEEECCCCCCCC
Q 011002 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGLNTVDRVLLDAPCSGTG 263 (496)
Q Consensus 188 GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~----~~~~~~~FD~VLlDpPCSg~G 263 (496)
|-|..++.+|..++ ..|+++|.++.+++.++ ++|... ++..+-.++. .......+|.|+- |+|.+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~--~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADH--VIDYSDDDFVEQIRELTGGRGVDVVID---CVGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESE--EEETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccc--cccccccccccccccccccccceEEEE---ecCcH
Confidence 35788889998876 79999999999987654 577543 3344333221 1122247999987 66643
Q ss_pred cccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 264 vi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
..+..++.++ ++||+++.....-
T Consensus 70 -------------------------~~~~~~~~~l----~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 -------------------------DTLQEAIKLL----RPGGRIVVVGVYG 92 (130)
T ss_dssp -------------------------HHHHHHHHHE----EEEEEEEEESSTS
T ss_pred -------------------------HHHHHHHHHh----ccCCEEEEEEccC
Confidence 2477788887 9999998765443
No 297
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.78 E-value=0.73 Score=46.10 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+..+|+|+|||-=-.++....... ...++|.||+...++.+..-+..+|+.. .+...|...-+ +....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~-~~~v~Dl~~~~---~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPH-DARVRDLLSDP---PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CE-EEEEE-TTTSH---TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCc-ceeEeeeeccC---CCCCcchhhH
Confidence 468999999999888775544332 3589999999999999999999999753 33334654432 1256899987
No 298
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.72 E-value=3 Score=41.01 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=50.2
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..||-.|+++ +|.+..+|..+.. ...|+.++.+....+.+.+.....+ .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 477899999998 4888888876543 3478888887654444444333333 2446677876642110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|+++.++-
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 57899999764
No 299
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.70 E-value=0.37 Score=48.44 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+.+|+...|+||.|||+|-.|... .-.|+|+|.-+- .+++...| .|..+..|+..+... ....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~m-----a~sL~dtg--~v~h~r~DGfk~~P~--r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPM-----AQSLMDTG--QVTHLREDGFKFRPT--RSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchh-----hhhhhccc--ceeeeeccCcccccC--CCCCceEEe
Confidence 468999999999999999866553 458999997653 33443333 477888999887532 368999999
Q ss_pred CC
Q 011002 256 DA 257 (496)
Q Consensus 256 Dp 257 (496)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 85
No 300
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.62 E-value=3.8 Score=39.98 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-------c-CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-------~-~~~ 248 (496)
.+.+||=.| |+|+.+.+++..+... ..|+.++.+...++.+...+...+. ++.++..|..+.... . ..+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 467788777 5788898888766433 3899999999888877777766543 466778888764321 0 114
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+..+
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999976543
No 301
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.59 E-value=1.9 Score=41.27 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+..||=.| |+|+.+.+++..+... ..|++++.++..+..+...+... ..+.++..|..+.... + ..+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367788777 4788888888765433 48999999998887776666543 3467777887653211 1 014
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+..+
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689998754
No 302
>PRK13699 putative methylase; Provisional
Probab=91.57 E-value=0.44 Score=46.95 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=38.8
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMG 227 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g 227 (496)
-.+|+.|||-+||+|....... .++ ...+++|+++.-++.+.+++....
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~-~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAAL-QSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHH-HcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 3589999999999997655433 332 468899999999999999887653
No 303
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.39 E-value=2.5 Score=40.89 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred CCCCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---------cc
Q 011002 176 PQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---------VL 245 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---------~~ 245 (496)
+.++.+||=.| |+|+.+..++..+...| .|++++.+...+..+...+...+...+.++..|...... ..
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 34677888888 46788887776554334 899999999888888777777665556666666642110 00
Q ss_pred -CCCCCCEEEECCC
Q 011002 246 -GLNTVDRVLLDAP 258 (496)
Q Consensus 246 -~~~~FD~VLlDpP 258 (496)
..+.+|.|+..+.
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1157899998764
No 304
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.39 E-value=1.1 Score=46.35 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=56.0
Q ss_pred CCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCC
Q 011002 176 PQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEM---KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 176 ~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDi---s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
+++|++||=.|+|+ |..+..+|..++ ..|++++. ++.+++.+ +.+|...+.....|... ......||
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~---~~~~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAE---VKLVGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhh---hhhcCCCC
Confidence 46899999887643 333344555543 37888886 67777654 45777532111111111 01124699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++..-
T Consensus 241 ~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~G 269 (355)
T cd08230 241 LIIE---ATGVP-------------------------PLAFEALPAL----APNGVVILFG 269 (355)
T ss_pred EEEE---CcCCH-------------------------HHHHHHHHHc----cCCcEEEEEe
Confidence 8875 54432 1356677776 9999887543
No 305
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.34 E-value=3.1 Score=41.03 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=53.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
++.+||-.| |+|+.+..++..+... ..|++++.++..+..+...+...+. ++.++..|..+.... + ..+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 477888787 5677888777655433 4899999998888777666665543 356777888753211 0 114
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+.++
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689999866
No 306
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.18 E-value=0.39 Score=49.04 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--ceEEEEecCCCCCccccCCCCCCEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM--GV--TNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~--g~--~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
...+||=+|-|-||.--..+.. +.-+.|.-+|++...++..++-+..+ |. +.|.+..+|+..|-+....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4578999999999987655444 33467999999999999888877665 33 3488888999887665556899999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
++|-- +| ........|+....-..+.| |+||+++. . .|+..+-..+++
T Consensus 200 i~dss---------dp---------vgpa~~lf~~~~~~~v~~aL----k~dgv~~~----q--~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 200 ITDSS---------DP---------VGPACALFQKPYFGLVLDAL----KGDGVVCT----Q--GECMWLHLDYIK 247 (337)
T ss_pred EEecC---------Cc---------cchHHHHHHHHHHHHHHHhh----CCCcEEEE----e--cceehHHHHHHH
Confidence 99731 11 12234556676766666665 99998843 2 366666555554
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.00 E-value=2.4 Score=46.86 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=97.1
Q ss_pred HHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCCcc---CCCCcCCcccEEEecCCCCCCCCcccccceEEEecCcchhHH-
Q 011002 96 ESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL---DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPV- 171 (496)
Q Consensus 96 ea~~~~~p~~iRvNtlk~~~~~l~~~L~~~G~~~---~p~~~~~~~gl~~~~~~~~i~~~~~~~~G~~~iQd~sS~l~v- 171 (496)
+.+....-+.-.+++.. ..++.+.|.++|+.+ |.+..|+..+ ..++-.+-.-..||--++.++..+..
T Consensus 81 ~~l~~g~~li~~l~p~~--~~~l~~~l~~~~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~aa~~~~~~ 152 (509)
T PRK09424 81 ALLREGATLVSFIWPAQ--NPELLEKLAARGVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEAAHEFGRF 152 (509)
T ss_pred HhcCCCCEEEEEeCccc--CHHHHHHHHHcCCEEEEeecccccccCC------CcccccchhhhhHHHHHHHHHHHhccc
Confidence 33333334445555532 367999999998854 3332222211 11111222223454444443322211
Q ss_pred -----HhcCCCCCCeEeecccCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-------
Q 011002 172 -----MALAPQEKERVIDMAAAPGG-KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG------- 238 (496)
Q Consensus 172 -----~~L~~~~g~~VLDlcAGpGg-ktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~------- 238 (496)
-++...++.+|+=+|||+=| .++.+|..++ ..|+++|.++.+++.++. +|.+.+.+-..+.
T Consensus 153 ~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 153 FTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGY 226 (509)
T ss_pred CCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccch
Confidence 12335689999999999855 4556666665 379999999999886654 6876433311110
Q ss_pred -CCCccc--------cC--CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE
Q 011002 239 -NELPKV--------LG--LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY 307 (496)
Q Consensus 239 -~~l~~~--------~~--~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~ 307 (496)
..+... +. ...+|+|+. |++.-- ++.|. -+...+++.+ ||||.
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIe---tag~pg-~~aP~------------------lit~~~v~~m----kpGgv 280 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIIT---TALIPG-KPAPK------------------LITAEMVASM----KPGSV 280 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEE---CCCCCc-ccCcc------------------hHHHHHHHhc----CCCCE
Confidence 011000 00 146999987 333200 01111 1247777877 99999
Q ss_pred EEEEeCC
Q 011002 308 IVYSTCS 314 (496)
Q Consensus 308 LVYSTCS 314 (496)
||...|.
T Consensus 281 IVdvg~~ 287 (509)
T PRK09424 281 IVDLAAE 287 (509)
T ss_pred EEEEccC
Confidence 9998885
No 308
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.99 E-value=4.4 Score=39.39 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=54.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+..||=.| |+|+.+..++..+... ..|+..+.+...+..+...+...+. .+.++..|..+..... ..+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 366777777 5577888887766443 4899999998888887777766553 4666778877642110 125
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+...
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 689999977543
No 309
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.98 E-value=3.2 Score=40.10 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=53.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+...| .|++++.++..+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45677555 57888999888654434 899999999988887777766553 467777887753211 0 1146
Q ss_pred CCEEEECCC
Q 011002 250 VDRVLLDAP 258 (496)
Q Consensus 250 FD~VLlDpP 258 (496)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 899998654
No 310
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=90.98 E-value=0.11 Score=50.37 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~ 220 (496)
...++||+|||-|-.|.+++-.+. .|+|-++|..|..+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLK 151 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHh
Confidence 347899999999999998887653 5999999987766554
No 311
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.91 E-value=4.7 Score=38.73 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.|+ +|+.+.+++..+ ..+..|++++.++..++.+...+...+. ++.++..|..+.... + ..+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567887774 788888887754 3345899999998887777666655543 577788888664211 0 1146
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
.|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987643
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.87 E-value=0.67 Score=48.33 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=58.7
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---cCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~~~~ 248 (496)
..+++|++||=.|+ |+.++.++++.+..| .|+++|.++.+++.++ .+|.+.+ +..+...+... ...+
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVRELTGG 258 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHHHHhCC
Confidence 34678999998875 455544443332223 6999999999987664 4677532 22221111110 1113
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.+|+|+- |+|.+ ..+..+++++ ++||++|...
T Consensus 259 g~d~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFE---MAGSV-------------------------PALETAYEIT----RRGGTTVTAG 290 (371)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEEEc
Confidence 6898874 55432 1256677777 9999987643
No 313
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.80 E-value=4.1 Score=39.53 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=54.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||=.| |+|+.+.+++..+...| .|++++.+++.++.+...+...+. ++.++..|..+..... ..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467888777 66788888887665434 799999999998888777655443 4667777876532110 124
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+.
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 6899998664
No 314
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.72 E-value=3.8 Score=45.90 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=55.8
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC--------ceEEEEecCCCCCcccc
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV--------TNTIVCNYDGNELPKVL 245 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~--------~nv~v~~~D~~~l~~~~ 245 (496)
+.+.|..||=.|+ +|+.+.+++..+. .+..|++++.+...+..+...+..+++ .++.++.+|..+.....
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4456777876665 6888988887653 334899999999988877776654322 24778888987653221
Q ss_pred -CCCCCCEEEECC
Q 011002 246 -GLNTVDRVLLDA 257 (496)
Q Consensus 246 -~~~~FD~VLlDp 257 (496)
..+.+|.|++.+
T Consensus 155 ~aLggiDiVVn~A 167 (576)
T PLN03209 155 PALGNASVVICCI 167 (576)
T ss_pred HHhcCCCEEEEcc
Confidence 125789999843
No 315
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.65 E-value=1.3 Score=45.90 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc----cccCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP----KVLGL 247 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~----~~~~~ 247 (496)
..+++|++||=.|+ |+.+..++++.+..| .|+++|.++.+++.++ .+|.+. +++.....+. .....
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~~--~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGATH--TVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCce--EEcCCCcCHHHHHHHHhCC
Confidence 35678999998865 555544443333223 5999999999988774 467643 2222111111 11122
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
..+|+|+- |+|.. ..+..++.++ ++||++|+.-
T Consensus 244 ~g~d~vid---~~g~~-------------------------~~~~~~~~~~----~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVID---AVGRP-------------------------ETYKQAFYAR----DLAGTVVLVG 276 (358)
T ss_pred CCCCEEEE---CCCCH-------------------------HHHHHHHHHh----ccCCEEEEEC
Confidence 36898873 55531 1245566776 9999998654
No 316
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.64 E-value=4.2 Score=38.91 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=52.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||-.|++ |+.+.++++.+... ..|++++.++..+..+...+...+ ++.++..|..+..... ..+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 36788888874 88888888766433 489999999988877655554433 5677788877532110 014
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+.
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5799988653
No 317
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.60 E-value=3.1 Score=41.65 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=77.2
Q ss_pred eecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-c-CCCCCCEEEECCCCC
Q 011002 183 IDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-L-GLNTVDRVLLDAPCS 260 (496)
Q Consensus 183 LDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-~-~~~~FD~VLlDpPCS 260 (496)
|...+|+=-. ++++++...++.++|+.++-...++.|+. +..++.+..+|+..-... + +.++=-+||+|||+-
T Consensus 93 l~~YpGSP~l---A~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE 167 (279)
T COG2961 93 LRYYPGSPLL---ARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFE 167 (279)
T ss_pred cccCCCCHHH---HHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcc
Confidence 6666665433 34556666799999999999999999997 667899999998542111 1 124567899999953
Q ss_pred CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 011002 261 GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 261 g~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~ 331 (496)
-- .+...+. +-|..++... ++|+.. -|.|.-+-..++.|++..
T Consensus 168 ~~---------------~eY~rvv----~~l~~~~kRf-----~~g~ya----iWYPik~r~~~~~f~~~L 210 (279)
T COG2961 168 LK---------------DEYQRVV----EALAEAYKRF-----ATGTYA----IWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred cc---------------cHHHHHH----HHHHHHHHhh-----cCceEE----EEEeecchHHHHHHHHHH
Confidence 22 2222222 2355566654 556543 377888888888888753
No 318
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.53 E-value=7.6 Score=37.40 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCCcccc--------CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g-~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
+.+||=.| |+|+.+.+++..+... ..|+..+.++.+++.+...+.... -.++.++..|..+..... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35677666 5788888888765433 489999999999888877765442 125778888887642110 125
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
..|.|+.++-..
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999976543
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.43 E-value=1.1 Score=45.19 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc---cccCCCCC
Q 011002 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP---KVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~---~~~~~~~F 250 (496)
.++++++||..++|. |..++.+|..++ ..|++.+.++.+.+.++ .+|++.+.. .....+. .......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~----~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK----ELGADEVLN--SLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCCEEEc--CCCcCHHHHHHHhcCCCc
Confidence 367889999976542 555556666653 46999999998877664 367654322 1111110 01223579
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|+|+- |+|.+ ..+..+++.| ++||+++..
T Consensus 234 D~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 262 (338)
T cd08254 234 DVIFD---FVGTQ-------------------------PTFEDAQKAV----KPGGRIVVV 262 (338)
T ss_pred eEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 98874 44332 1356677776 999998864
No 320
>PRK09186 flagellin modification protein A; Provisional
Probab=90.37 E-value=3.7 Score=39.72 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r-~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.+.+||=.|+ +|+.+.+++..+... ..|+.++.++..++.+...+.. .+-..+.++..|..+.... + ..
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 3567776665 577888888766443 4888999998888777766643 3334466667788764211 1 11
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+..|.|+.++.
T Consensus 82 ~~id~vi~~A~ 92 (256)
T PRK09186 82 GKIDGAVNCAY 92 (256)
T ss_pred CCccEEEECCc
Confidence 45899998773
No 321
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.25 E-value=5.5 Score=38.94 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r-~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.+.+||=.|++.+|.+..++..+.. ...|+.+|.+...++.....+.. +|..++.++..|..+.... + ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888876533667776665433 34789999999888887777665 4545677888888764211 0 11
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.|+.++-
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 57899998764
No 322
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.19 E-value=5.1 Score=39.49 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.|..+|=.|+++ +|.+..++..+...| .|+.++.+....+.+.+....+.-.++.++..|..+.... . ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 477899999884 889988888665334 7777765432222233323333223466777888764211 0 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67999988763
No 323
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.09 E-value=2.4 Score=45.18 Aligned_cols=115 Identities=15% Similarity=0.205 Sum_probs=71.9
Q ss_pred CCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCC----------CC-----ccccCCCCCC
Q 011002 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGN----------EL-----PKVLGLNTVD 251 (496)
Q Consensus 188 GpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~----------~l-----~~~~~~~~FD 251 (496)
|-|..++.+|..+... -.|+++||++.+++.+..- -. .+..-+.. .| +..+ ...|
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----~~--~i~e~~~~~~v~~~v~~g~lraTtd~~~l--~~~d 86 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----ES--YIEEPDLDEVVKEAVESGKLRATTDPEEL--KECD 86 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----cc--eeecCcHHHHHHHHHhcCCceEecChhhc--ccCC
Confidence 5677777777665544 4899999999999877532 11 11111100 00 1111 3678
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~ 331 (496)
++++=.|---.+ .++|++. .+.+|.+.+.+.|++|-.+|+ ..|..|---|+++..+|+..
T Consensus 87 v~iI~VPTPl~~--~~~pDls-----------------~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~ 146 (436)
T COG0677 87 VFIICVPTPLKK--YREPDLS-----------------YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEER 146 (436)
T ss_pred EEEEEecCCcCC--CCCCChH-----------------HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhc
Confidence 777755532222 2566643 366777777777899665554 66788999999999999873
No 324
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=90.03 E-value=1.2 Score=45.07 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCeEeecccCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCC----CCCC-
Q 011002 179 KERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL----NTVD- 251 (496)
Q Consensus 179 g~~VLDlcAGp--Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~----~~FD- 251 (496)
=...||+|||- -+-+-.+|+...+..+|+-+|+++-.+...+..+....-..+.++.+|.++....+.. +-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 36799999994 3455668888888899999999999999888888765433478999999986443310 1122
Q ss_pred ----EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 252 ----RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 252 ----~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.||+ .|++---|+ .++ -..++....+.| .||.+|+.|..+-
T Consensus 149 ~rPVavll------~~vLh~v~D------~~d-------p~~iv~~l~d~l----apGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLL------VAVLHFVPD------DDD-------PAGIVARLRDAL----APGSYLAISHATD 193 (267)
T ss_dssp TS--EEEE------CT-GGGS-C------GCT-------HHHHHHHHHCCS-----TT-EEEEEEEB-
T ss_pred CCCeeeee------eeeeccCCC------ccC-------HHHHHHHHHHhC----CCCceEEEEecCC
Confidence 3333 122211111 111 134566666665 9999999998764
No 325
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.01 E-value=4.5 Score=39.00 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=53.3
Q ss_pred eEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-----CCCCCCEEE
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-----GLNTVDRVL 254 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-----~~~~FD~VL 254 (496)
+||-.| |+|+.+..++..+-..| .|++++.++...+.+...+...+-.++.++..|..+..... -...+|.|+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 567556 56888888877654434 89999999988877776665554457888889987653211 013579999
Q ss_pred ECCC
Q 011002 255 LDAP 258 (496)
Q Consensus 255 lDpP 258 (496)
.++.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8764
No 326
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=23 Score=35.68 Aligned_cols=189 Identities=21% Similarity=0.226 Sum_probs=108.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHH---------HHHHHHHHHcCCceEEEEecCCCCCcc--cc
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRL---------KSLTANLHRMGVTNTIVCNYDGNELPK--VL 245 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl---------~~l~~nl~r~g~~nv~v~~~D~~~l~~--~~ 245 (496)
...+||-+|=|-=.++..|+...+ ..+.|+|..++..-. ..-...++++|+. ++...|+..+.. .+
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~ 133 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADL 133 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEecccc
Confidence 456788888888888888888776 556777766554431 2222345677764 233344444322 33
Q ss_pred CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCcEEEEEeCCCCCcCCHHHH
Q 011002 246 GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSK-SGGYIVYSTCSIMVTENEAVI 324 (496)
Q Consensus 246 ~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lk-pGG~LVYSTCSl~~eENE~vV 324 (496)
..+.||.|+.+=|-+|.|.- .+.+. --+.....+-+.+|..|-.+| + .-|.|+.+--+..| =|...+
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~-~e~d~------~~i~~~qkL~rgFle~akemL----~~edGeI~itlk~t~P-~~~W~i 201 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIK-FEQDR------NIIPLHQKLFRGFLESAKEML----KDEDGEIHITLKTTYP-FNPWNI 201 (282)
T ss_pred cccccceEEEcCCCCCCCcc-cccch------HHHHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeccCCC-Cchhhh
Confidence 45789999999999999975 22111 122235566677888888887 6 66777665333333 355777
Q ss_pred HHHHHhCCcEEeecC-Cc-CCCCCcccccccccCCCcCCeeEecCCCCCCCceeEEEEEecCCC
Q 011002 325 DYALKKRDVKLVPCG-LD-FGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 386 (496)
Q Consensus 325 ~~~L~~~~~~lv~~~-~~-~~~~g~~~~~~~~f~~~~~~~~r~~P~~~~~dGFFvA~l~K~~~~ 386 (496)
+.+.+..++.+.... .. +.-||+.. .+- ....|.+.++ .+-.|-+++..++-..+.
T Consensus 202 k~Lak~~gl~L~~~skF~~~~~Pgy~~---Kr~--~gs~cd~p~l-~~~~d~~~y~f~~~~~~~ 259 (282)
T KOG4174|consen 202 KFLAKEFGLTLLEDSKFEKSNYPGYSN---KRG--DGSRCDSPLL-VHERDAIEYHFLKFVSPS 259 (282)
T ss_pred hHhhhhccccchhcccchhhcCCCccc---ccC--CCcccCCccc-cccccceEEEEEeecccc
Confidence 766666676665431 11 12355432 221 1122333344 245666666665544443
No 327
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.94 E-value=1.5 Score=43.86 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=57.5
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD 251 (496)
+...+|++||=+|+ |+.++.++++.+..| .|+++|.++.+++.++ .+|.+.+.-.......+........+|
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELAL----SFGATALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCcEecCchhhHHHHHHHhCCCCCC
Confidence 34568999998865 555554444333223 4889999999887654 467653221110000011111124699
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
+|+- |+|.. ..+..+++++ ++||+++...
T Consensus 190 ~vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 218 (280)
T TIGR03366 190 VALE---FSGAT-------------------------AAVRACLESL----DVGGTAVLAG 218 (280)
T ss_pred EEEE---CCCCh-------------------------HHHHHHHHHh----cCCCEEEEec
Confidence 9874 44432 1356677776 9999988544
No 328
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=89.93 E-value=5.9 Score=38.14 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.3
Q ss_pred eEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc-------ccc-CCCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-------KVL-GLNTVD 251 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~-------~~~-~~~~FD 251 (496)
+||=.| |+|+.+.+++..+- ....|++++.+....+.+...+...+. ++.++..|..+.. ... .....|
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG-SVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 566555 56888888886543 334899999999888877776665553 5777888887643 110 124689
Q ss_pred EEEECCCCC
Q 011002 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDpPCS 260 (496)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 999876433
No 329
>PRK12937 short chain dehydrogenase; Provisional
Probab=89.92 E-value=4.5 Score=38.83 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=69.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDi-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.+.+||=.|+ +|+.+.+++..+...| .|+.+.. ++.....+.+.+...+. ++.++..|..+.... + ..
T Consensus 4 ~~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 4 SNKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGG-RAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3566776665 5888888887665444 5555543 44555666666666553 477778888764211 1 11
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHH----HHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKC----SYLQKQLILAAIDMVDANSKSGGYIVYSTCSIM 316 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l----~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~ 316 (496)
+..|.|+..+.-.+.+.+. ..+.++.... ..-...++..++..+ +.+|.+|+.+++..
T Consensus 82 ~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~ss~~~ 143 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIA-------DFDLEDFDRTIATNLRGAFVVLREAARHL----GQGGRIINLSTSVI 143 (245)
T ss_pred CCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHHh----ccCcEEEEEeeccc
Confidence 4689999866422211111 1222222211 112233455555554 67899999987643
No 330
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.90 E-value=1.4 Score=44.73 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=34.1
Q ss_pred cCCCCCCeEeecccC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAA--PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAG--pGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|++ .|..++++|..++ ..|++.+.++++.+.++ .+|++.
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCE
Confidence 357789999977743 3444455555543 37999999988876663 468754
No 331
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.83 E-value=8.3 Score=38.05 Aligned_cols=79 Identities=9% Similarity=0.045 Sum_probs=52.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-------cCCCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------LGLNT 249 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-------~~~~~ 249 (496)
.|.++|=.|++ ||.+..++..+. ....|+.++.+...++.+.+.+....-.++.++..|..+.... ...+.
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 36677777655 567777776554 3358999999999888887777554223577778888764211 01256
Q ss_pred CCEEEECC
Q 011002 250 VDRVLLDA 257 (496)
Q Consensus 250 FD~VLlDp 257 (496)
+|.++.++
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89988865
No 332
>PRK07904 short chain dehydrogenase; Provisional
Probab=89.73 E-value=4.4 Score=39.81 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=55.5
Q ss_pred CCCCeEeecccCCcHHHHHHHHHc-CCC-cEEEEEeCCHHH-HHHHHHHHHHcCCceEEEEecCCCCCccc-------cC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALM-KNT-GLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPKV-------LG 246 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~-~~~-g~V~AvDis~~r-l~~l~~nl~r~g~~nv~v~~~D~~~l~~~-------~~ 246 (496)
..+.+||-.|| +||.+..++..+ ... ..|++++.++.. ++.+.+.+...+..++.++..|..+.... ..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 45667887776 678898888764 332 389999988875 77777777777655788888888764321 11
Q ss_pred CCCCCEEEECC
Q 011002 247 LNTVDRVLLDA 257 (496)
Q Consensus 247 ~~~FD~VLlDp 257 (496)
.+..|.++.++
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 24799888743
No 333
>PLN02740 Alcohol dehydrogenase-like
Probab=89.73 E-value=1.6 Score=45.81 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|+ |+.++.++++.+..| .|+++|.++.+++.++ .+|.+.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45778999998875 566655544433333 6999999999988774 478754
No 334
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.72 E-value=2.1 Score=44.74 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCeEeecccCCcHHHHHHHHHc--------CCC-------cEEEEEeCCHHHHHHHHHHHHHc-----CCceEEEEecCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALM--------KNT-------GLIYANEMKASRLKSLTANLHRM-----GVTNTIVCNYDG 238 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~--------~~~-------g~V~AvDis~~rl~~l~~nl~r~-----g~~nv~v~~~D~ 238 (496)
.-+|+|+||+.|.-|+.+...+ ... -.|+-+|+=..=...+-..+... ...++-+.-.-+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 4689999999999998765432 111 27888887443333333333322 123443332233
Q ss_pred CCCccccCCCCCCEEEECCCCCCCCcccCCchhh--------------cc-CCHHHHHHHH--HHHHH---HHH-HHHHh
Q 011002 239 NELPKVLGLNTVDRVLLDAPCSGTGVISKDESVK--------------TS-KSLEDIQKCS--YLQKQ---LIL-AAIDM 297 (496)
Q Consensus 239 ~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~--------------~~-~s~~~i~~l~--~lQ~~---LL~-~A~~~ 297 (496)
.-+...++.++.|.++. .+....+++.|.-. .. .++..+...- ..|++ +|. +|-.+
T Consensus 97 SFy~rLfP~~Svh~~~S---s~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHS---SYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp -TTS--S-TT-EEEEEE---ES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred hhhhccCCCCceEEEEE---echhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 33445556688898875 33444444433221 11 1222222211 12222 233 44443
Q ss_pred hhhcCCCCcEEEEEeCCCCC
Q 011002 298 VDANSKSGGYIVYSTCSIMV 317 (496)
Q Consensus 298 L~~~lkpGG~LVYSTCSl~~ 317 (496)
+|||++|.+.+....
T Consensus 174 -----v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 -----VPGGRMVLTFLGRDE 188 (334)
T ss_dssp -----EEEEEEEEEEEE-ST
T ss_pred -----ccCcEEEEEEeeccc
Confidence 899999998776544
No 335
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.60 E-value=2 Score=44.03 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=58.3
Q ss_pred CCCCCCeEeecccCCcHHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC---CccccCCC
Q 011002 175 APQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl---~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~---l~~~~~~~ 248 (496)
...+|++||=.|+ |+.+. ++|..++ ...|++++.++.+++.+ +.+|...+ ++.+... +.......
T Consensus 157 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~Ga~~~--i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGA--GTIGLLAIQCAVALG-AKSVTAIDINSEKLALA----KSLGAMQT--FNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHH----HHcCCceE--ecCcccCHHHHHHHhcCC
Confidence 4568999998865 44444 4455543 23588999999988765 34676432 2222111 11111224
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
.+|.+++| |+|.. ..+..+++++ ++||+++..-
T Consensus 228 ~~d~~v~d--~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILE--TAGVP-------------------------QTVELAIEIA----GPRAQLALVG 260 (347)
T ss_pred CCCeEEEE--CCCCH-------------------------HHHHHHHHHh----hcCCEEEEEc
Confidence 68866666 55532 1366777887 9999988654
No 336
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.48 E-value=6.6 Score=38.13 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCCCCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----
Q 011002 175 APQEKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----- 245 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~----- 245 (496)
...++.+||-.|+. |+.+.+++..+. ....|++++.++..+..+....... ++.++..|..+.... +
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHH
Confidence 33567899988875 778888777654 3348999999988777665544322 467777887764321 0
Q ss_pred CCCCCCEEEECCC
Q 011002 246 GLNTVDRVLLDAP 258 (496)
Q Consensus 246 ~~~~FD~VLlDpP 258 (496)
..+.+|.|+..+.
T Consensus 83 ~~~~~d~vi~~ag 95 (264)
T PRK12829 83 RFGGLDVLVNNAG 95 (264)
T ss_pred HhCCCCEEEECCC
Confidence 0146899998664
No 337
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.44 E-value=1.9 Score=44.48 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=35.7
Q ss_pred cCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=+|||+ |..++.+|..++ ..|+++|.++.+++.++ .+|.+.
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~ 213 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGADL 213 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCce
Confidence 3567899999999854 444455555553 37999999999887664 457643
No 338
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.36 E-value=8.4 Score=38.50 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=49.3
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..||=.|+++ +|.+..+|..+.. ...|+.++.+....+.+.+....++.. .++..|..+..... ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHc
Confidence 367888889874 6888888876543 347888888753333344434444533 45667887643210 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 67999998774
No 339
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.32 E-value=0.67 Score=44.19 Aligned_cols=118 Identities=15% Similarity=0.221 Sum_probs=61.7
Q ss_pred CCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHH------------HHHcC-CceEEEEecCCCCCccccCCCCCCEE
Q 011002 188 APGGKTTYIAALMKNTG-LIYANEMKASRLKSLTAN------------LHRMG-VTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 GpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~n------------l~r~g-~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
|.|..++.+|..+...| .|+++|+++.+++.+.+- +.+.. -.+..+. .|.. ... ...|+|
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~---~ai--~~adv~ 80 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE---EAI--KDADVV 80 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH---HHH--HH-SEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh---hhh--hccceE
Confidence 56666666666555444 899999999999887632 12111 1233332 2211 111 357888
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHhC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~~ 331 (496)
++-.|.--.. ...|+.. .+..|++.+.+++++ |.+|..-+|+.|.--++++..+|++.
T Consensus 81 ~I~VpTP~~~--~~~~Dls-----------------~v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDLS-----------------YVESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp EE----EBET--TTSBETH-----------------HHHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHH
T ss_pred EEecCCCccc--cCCccHH-----------------HHHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhh
Confidence 8865531111 1122221 133444444444477 56666678899988998999999864
No 340
>PRK05599 hypothetical protein; Provisional
Probab=89.20 E-value=7.5 Score=37.89 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCCCCE
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~FD~ 252 (496)
.||=.|+ ++|.+..++..+.....|+.++.+...++.+.+.+...|...+.++..|..+..... ..+..|.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 4565555 567788888766555688889999999998888887776545777788887642210 1257899
Q ss_pred EEECC
Q 011002 253 VLLDA 257 (496)
Q Consensus 253 VLlDp 257 (496)
++.++
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 99865
No 341
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.17 E-value=1.5 Score=44.68 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=57.1
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCC-cE-EEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCC---CccccCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GL-IYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE---LPKVLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~-g~-V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~---l~~~~~~~ 248 (496)
+.+++|++||=.|+ |+.++.++++.+.. .. |++++.++.+++.+ ..+|++.+ +...... +.......
T Consensus 159 ~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~----~~~ga~~~--i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELA----KALGADFV--INSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH----HHhCCCEE--EcCCcchHHHHHHHhCCC
Confidence 45678999998865 55555444333221 24 99999999987765 34676533 2221111 11111224
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.||+|+- |+|.. ..+..++++| +++|+++..
T Consensus 231 ~~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIE---CSGNT-------------------------AARRLALEAV----RPWGRLVLV 261 (339)
T ss_pred CCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 6999874 44432 1245667776 999998754
No 342
>PRK06194 hypothetical protein; Provisional
Probab=89.01 E-value=6.3 Score=39.03 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+.. ...|+.+|.+...++.+...+...+. ++.++.+|..+.... . ..+.
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788555 558888888875543 34899999998877777666655443 477788888764211 1 1146
Q ss_pred CCEEEECCCCCCCC
Q 011002 250 VDRVLLDAPCSGTG 263 (496)
Q Consensus 250 FD~VLlDpPCSg~G 263 (496)
+|.|+..+--+..+
T Consensus 84 id~vi~~Ag~~~~~ 97 (287)
T PRK06194 84 VHLLFNNAGVGAGG 97 (287)
T ss_pred CCEEEECCCCCCCC
Confidence 89999977544433
No 343
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.86 E-value=5.7 Score=42.35 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCeEeecccCCcHHHHHHH
Q 011002 179 KERVIDMAAAPGGKTTYIA 197 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA 197 (496)
.-+|+|+|||+|..|+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999999887653
No 344
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.84 E-value=5.5 Score=38.87 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=49.8
Q ss_pred eEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-------C--CCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------G--LNTV 250 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-------~--~~~F 250 (496)
+||-.| |+|+.+..++..+...| .|++++.++..++.+...+. + .++.++..|..+..... . .+.+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 456555 45788888877554434 89999999888777665543 2 35778888887643210 0 2578
Q ss_pred CEEEECCCCC
Q 011002 251 DRVLLDAPCS 260 (496)
Q Consensus 251 D~VLlDpPCS 260 (496)
|.|+..+-..
T Consensus 79 d~vi~~ag~~ 88 (260)
T PRK08267 79 DVLFNNAGIL 88 (260)
T ss_pred CEEEECCCCC
Confidence 9999866443
No 345
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.81 E-value=7 Score=37.66 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||=.| |+|+.+.+++..+.. ...|+.++.+...+..+...+...+ .++.++..|..+..... ..+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356777555 668888888876533 3489999998877766666655433 24566778887643210 014
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+..+..
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999997654
No 346
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.53 E-value=7.3 Score=37.97 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=50.5
Q ss_pred CeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~F 250 (496)
.+||=.| |+|+.+.+++..+ .....|++++.++..++.+.+.+...+. ++.++..|..+..... ..+..
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3566444 6678888887644 3345899999998887777777766553 5777788887643210 01468
Q ss_pred CEEEECC
Q 011002 251 DRVLLDA 257 (496)
Q Consensus 251 D~VLlDp 257 (496)
|.|+..+
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9999854
No 347
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.41 E-value=2.7 Score=42.73 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=51.8
Q ss_pred CCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.++++||=+|||+ |..++++|..++ ...|+++|.++.+++.+.. .++ ++.+ .. ....||+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~----~~~-----i~~~--~~----~~~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATG----YEV-----LDPE--KD----PRRDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhh----ccc-----cChh--hc----cCCCCCEEEE
Confidence 4678888776543 333344555543 2357788999988776543 111 1111 10 1246998875
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
|+|.. ..+..+++++ ++||++++.-
T Consensus 207 ---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~~G 231 (308)
T TIGR01202 207 ---ASGDP-------------------------SLIDTLVRRL----AKGGEIVLAG 231 (308)
T ss_pred ---CCCCH-------------------------HHHHHHHHhh----hcCcEEEEEe
Confidence 55532 1356777887 9999998654
No 348
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.40 E-value=13 Score=36.41 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=53.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..+|=.|++ |+.+..++..+. ....|++++.++..++.+...+....- .++.++..|..+..... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46778877754 567777776553 345899999999888877776655422 35677778887643210 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 57899998764
No 349
>PLN02827 Alcohol dehydrogenase-like
Probab=88.32 E-value=1.7 Score=45.71 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=58.2
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---ccCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---~~~~~ 248 (496)
..+++|++||=.|+ |+.++.++++.+..| .|+++|.++.+++.+ +.+|++.+.-...+...+.. ....+
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVTDFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCcEEEcccccchHHHHHHHHHhCC
Confidence 34678999998865 556655444332223 588999999887665 44787543211110001111 01113
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-cEEEEEe
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSG-GYIVYST 312 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpG-G~LVYST 312 (496)
.+|+|+- |+|.. ..+..+++++ ++| |++|..-
T Consensus 263 g~d~vid---~~G~~-------------------------~~~~~~l~~l----~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFE---CVGDT-------------------------GIATTALQSC----SDGWGLTVTLG 295 (378)
T ss_pred CCCEEEE---CCCCh-------------------------HHHHHHHHhh----ccCCCEEEEEC
Confidence 6998874 55542 1256677776 898 9997643
No 350
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.16 E-value=9.7 Score=37.91 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=48.6
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..+|=.|++. +|.+..+|..+... ..|+.++.+....+.+.+.....|. ..++..|..+..... ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467899999886 47888877765433 4788777765444444444344443 235677887642110 12
Q ss_pred CCCCEEEECC
Q 011002 248 NTVDRVLLDA 257 (496)
Q Consensus 248 ~~FD~VLlDp 257 (496)
+.+|.++.++
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6799998876
No 351
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.16 E-value=2.5 Score=44.86 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=32.8
Q ss_pred CCCCCCeEeeccc-C-CcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHH
Q 011002 175 APQEKERVIDMAA-A-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTAN 222 (496)
Q Consensus 175 ~~~~g~~VLDlcA-G-pGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~n 222 (496)
.+++|++||=+|+ | -|..++.+|..++ +...|+++|.++.+++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999987763 3 3444445555543 123799999999999988764
No 352
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=0.75 Score=43.24 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=45.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHc---CCceEEEEecCCCCCccccCCCCCCEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRM---GVTNTIVCNYDGNELPKVLGLNTVDRVL 254 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~---g~~nv~v~~~D~~~l~~~~~~~~FD~VL 254 (496)
.|.+||++|+|--+.+..|.+...+...|.--|-+...++.++.-..++ +.+.+.++..+...-........||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4688999998865554444333334468888999998888777766554 2232222222211111111235899999
Q ss_pred E
Q 011002 255 L 255 (496)
Q Consensus 255 l 255 (496)
+
T Consensus 109 a 109 (201)
T KOG3201|consen 109 A 109 (201)
T ss_pred e
Confidence 7
No 353
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.05 E-value=7.3 Score=37.76 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=54.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+|| +-.|+|+.+.+++..+... ..|++++.++..+..+.+.+...|. ++.++..|..+..... ..+
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 356777 4455678888887755433 4899999999888888877766654 4677788887643211 114
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+-+.
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 589999866543
No 354
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.98 E-value=10 Score=36.43 Aligned_cols=80 Identities=11% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~A-vDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
++.+||=.|+ +|+.+.+++..+...| .|+. .+.+....+.+...++..+. ++.++..|..+.... + ..
T Consensus 3 ~~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 3 SGKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR-KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567776665 5888888887665444 5655 45567777666666666553 466777887764211 0 11
Q ss_pred CCCCEEEECCCC
Q 011002 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~FD~VLlDpPC 259 (496)
+..|.|+..+..
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 468999997754
No 355
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.92 E-value=9.9 Score=37.83 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=52.2
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c----CCCCCCE
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L----GLNTVDR 252 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~----~~~~FD~ 252 (496)
..||=.|+ ||.+.+++..+.....|+.+|.+...++.+.+.+...|. ++.++..|..+.... + ..+.+|.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 34555554 689999998886556899999998888777766665543 466777887664211 0 1257899
Q ss_pred EEECCC
Q 011002 253 VLLDAP 258 (496)
Q Consensus 253 VLlDpP 258 (496)
|+.++-
T Consensus 80 li~nAG 85 (275)
T PRK06940 80 LVHTAG 85 (275)
T ss_pred EEECCC
Confidence 998764
No 356
>PRK07677 short chain dehydrogenase; Provisional
Probab=87.82 E-value=11 Score=36.69 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=52.1
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
|.++|-.|+ .|+.+.+++..+.. ...|++++.+...++.+...+...+ .++.++..|..+..... ..+.
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 356776665 55677777765443 3489999999988887777776554 35777888876532110 1146
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
.|.|+.++.+
T Consensus 79 id~lI~~ag~ 88 (252)
T PRK07677 79 IDALINNAAG 88 (252)
T ss_pred ccEEEECCCC
Confidence 8999987643
No 357
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.65 E-value=12 Score=38.64 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+..||=.| |+|+.+..++..+. ....|+.++.++..++.+.+.+...|. ++.++..|..+..... ..+
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 456777666 56778887777553 334899999999999888888877775 4667778877642210 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.++.++..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 79999987643
No 358
>PRK06196 oxidoreductase; Provisional
Probab=87.65 E-value=7.2 Score=39.58 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=51.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+... ..|++++.++..++.+...+. ++.++..|..+..... ..+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 466788777 4578888888765433 489999999887766655443 2567778887643210 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
..|.|+.++..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 78999998754
No 359
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.57 E-value=6.5 Score=38.23 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.|+ +|+.+..++..+.. ...|+.++.+...++.+...+...+ .++.++..|..+..... ..+
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678887876 45677777765543 3489999999998888887777665 34667778877642110 115
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.++.++.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7999998764
No 360
>PRK09135 pteridine reductase; Provisional
Probab=87.54 E-value=8.3 Score=36.91 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMK-ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis-~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.+.+||=.|+ +|+.+.+++..+. ....|++++.+ ...+..+...+...+-.++.++..|..+..... ..
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567888885 5888888887654 33488998874 455555555555444345778888887643211 01
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+..|.|+..+.
T Consensus 84 ~~~d~vi~~ag 94 (249)
T PRK09135 84 GRLDALVNNAS 94 (249)
T ss_pred CCCCEEEECCC
Confidence 46899998653
No 361
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.48 E-value=10 Score=36.41 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.| |+|+.+..++..+... ..|++++.++.....+...+...+ .++.++..|..+.... + ..+.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677777 4788888888766433 489999999988877777666544 3477788888764321 1 0146
Q ss_pred CCEEEECC
Q 011002 250 VDRVLLDA 257 (496)
Q Consensus 250 FD~VLlDp 257 (496)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89998854
No 362
>PRK07832 short chain dehydrogenase; Provisional
Probab=87.31 E-value=6 Score=39.03 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=47.7
Q ss_pred EeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCCCCE
Q 011002 182 VIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDR 252 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~FD~ 252 (496)
||=.| |+|+.+..++..+.. +..|+.++.+...++.+...+...+...+.+...|..+.... . ..+.+|.
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV 81 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 44344 467788877775543 347888899888887777777666544445566777653210 0 1246899
Q ss_pred EEECCC
Q 011002 253 VLLDAP 258 (496)
Q Consensus 253 VLlDpP 258 (496)
|+..+.
T Consensus 82 lv~~ag 87 (272)
T PRK07832 82 VMNIAG 87 (272)
T ss_pred EEECCC
Confidence 998653
No 363
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=87.27 E-value=7.8 Score=37.68 Aligned_cols=79 Identities=9% Similarity=0.119 Sum_probs=51.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCCcccc--------CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~-g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
+.+||=.|+ +|+.+.+++..+.. ...|+.+|.+...++.+...+... +-.++.++..|..+..... ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777774 57788877775543 348999999988777766655432 3235777888887632110 115
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.|+..+.
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 364
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=87.15 E-value=7.9 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.107 Sum_probs=35.6
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANL 223 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl 223 (496)
....+||=-|||-|..+-.||.+ +-.+.|||.|--|+-...-.+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHH
Confidence 34678999999999999999987 258999999999975544433
No 365
>PRK05855 short chain dehydrogenase; Validated
Probab=86.99 E-value=8.7 Score=41.86 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=56.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+.++|=.|+ +||.+.+++..+... ..|+.++.+...++.+...+...|. ++.++..|..+..... ..+.
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 466775554 778888888766433 3799999999888888887777665 5778888987643210 1256
Q ss_pred CCEEEECCCCCC
Q 011002 250 VDRVLLDAPCSG 261 (496)
Q Consensus 250 FD~VLlDpPCSg 261 (496)
+|.|+.++-...
T Consensus 393 id~lv~~Ag~~~ 404 (582)
T PRK05855 393 PDIVVNNAGIGM 404 (582)
T ss_pred CcEEEECCccCC
Confidence 899999775433
No 366
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.79 E-value=15 Score=36.18 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCc-eEEEEecCCCCCcccc-------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVT-NTIVCNYDGNELPKVL-------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~-nv~v~~~D~~~l~~~~-------~~~~ 249 (496)
+.+||-.| |+|+.+..++..+... ..|++++.++..++.+...+...+.. ++.++..|..+..... ..+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 44566555 5667777777654333 48999999988888877766665553 5778888887643210 1146
Q ss_pred CCEEEECCCCCCC
Q 011002 250 VDRVLLDAPCSGT 262 (496)
Q Consensus 250 FD~VLlDpPCSg~ 262 (496)
+|.|+..+.....
T Consensus 82 id~vv~~ag~~~~ 94 (280)
T PRK06914 82 IDLLVNNAGYANG 94 (280)
T ss_pred eeEEEECCccccc
Confidence 7999987654433
No 367
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.71 E-value=3.1 Score=43.13 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=36.2
Q ss_pred cCCCCCCeEeeccc--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcA--GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|+ |.|..++++|..++ ..|++++.++.+++.++. .+|.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 35788999998876 24556666776654 469999999888766542 367754
No 368
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.43 E-value=13 Score=36.85 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=46.4
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..+|=.|++. +|.+..++..+.. ...|+.++.+. ++....+.+...+ ..+.++..|..+..... ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 467888899987 4888877776643 34777777763 3322222222221 23456667876632110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++.
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 57999999774
No 369
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=86.38 E-value=14 Score=35.98 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=50.8
Q ss_pred eEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~FD 251 (496)
+||=.|++ ||.+..++..+. ....|+.++.++..++.+...+...+ ++.++..|..+.... + ..+.+|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 56666755 667777777553 33589999999988888877776544 566778887653211 0 125799
Q ss_pred EEEECCC
Q 011002 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDpP 258 (496)
.|+.++-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9998764
No 370
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.31 E-value=12 Score=36.60 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||=.|+ +|+.+.+++..+. ....|+.++.++..++.+...+...+. .+.++..|..+..... ..+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4778888885 6778888887553 334899999999888877777765543 4677778877643210 014
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+..+
T Consensus 87 ~id~vi~~A 95 (263)
T PRK07814 87 RLDIVVNNV 95 (263)
T ss_pred CCCEEEECC
Confidence 789998865
No 371
>PRK08324 short chain dehydrogenase; Validated
Probab=86.21 E-value=13 Score=42.42 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.|.+||=.|+ +|+.+.+++..+.. ...|+++|.+...+..+...+... .++.++..|..+.... + ..+
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678886665 57788877765543 348999999998887766555432 3577777887654211 1 124
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+-.+
T Consensus 498 ~iDvvI~~AG~~ 509 (681)
T PRK08324 498 GVDIVVSNAGIA 509 (681)
T ss_pred CCCEEEECCCCC
Confidence 799999876443
No 372
>PRK09242 tropinone reductase; Provisional
Probab=86.04 E-value=19 Score=34.98 Aligned_cols=128 Identities=10% Similarity=-0.042 Sum_probs=72.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCCCCccc--------cCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGNELPKV--------LGL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g-~~nv~v~~~D~~~l~~~--------~~~ 247 (496)
.|.+||=.|+ +|+.+..++..+.. ...|+.++.+.+.++.+...+.... -.++.++..|..+.... ...
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3667887776 46677777765543 3489999999988888877776541 12477778888653211 012
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~----~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
+.+|.|+..+.....+ | ....+.+++.... .-...++..++..+.. .++|.+|+.++..
T Consensus 87 g~id~li~~ag~~~~~-----~--~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~~ii~~sS~~ 149 (257)
T PRK09242 87 DGLHILVNNAGGNIRK-----A--AIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQ--HASSAIVNIGSVS 149 (257)
T ss_pred CCCCEEEECCCCCCCC-----C--hhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh--cCCceEEEECccc
Confidence 5789998855322111 1 1122333332221 1122344555544311 3468888877653
No 373
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=85.99 E-value=8.3 Score=37.22 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=52.3
Q ss_pred EeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCCCCE
Q 011002 182 VIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTVDR 252 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~FD~ 252 (496)
||=.| |+|+.+.+++..+.. ...|+.++.+...+..+...+...+. ++.++..|..+..... ..+..|.
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 44445 568888888765533 34889999998888777777766553 4677788876632110 1146899
Q ss_pred EEECCCCCCCC
Q 011002 253 VLLDAPCSGTG 263 (496)
Q Consensus 253 VLlDpPCSg~G 263 (496)
|+.++.....+
T Consensus 81 vi~~ag~~~~~ 91 (254)
T TIGR02415 81 MVNNAGVAPIT 91 (254)
T ss_pred EEECCCcCCCC
Confidence 99987654443
No 374
>PRK07024 short chain dehydrogenase; Provisional
Probab=85.91 E-value=10 Score=36.97 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=50.5
Q ss_pred CeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~F 250 (496)
.+||=.| |+|+.+..++..+... ..|+.++.++..+..+...+...+ ++.++..|..+..... ..+.+
T Consensus 3 ~~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 4566555 4778888888766433 489999999888876665554333 6778888887642210 12458
Q ss_pred CEEEECCC
Q 011002 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDpP 258 (496)
|.|+.++-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 99998763
No 375
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=85.77 E-value=1.4 Score=44.94 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=61.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEECC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDA 257 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlDp 257 (496)
.|..+||.|||-|--+. ..+...++++|++...+..++ +-|.. .++..|+..+|.. ..+||.+|.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak----~~~~~--~~~~ad~l~~p~~--~~s~d~~ls-- 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAK----RSGGD--NVCRADALKLPFR--EESFDAALS-- 109 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccc----cCCCc--eeehhhhhcCCCC--CCccccchh--
Confidence 48899999999995432 113357889998876554332 22322 5777899888754 478998864
Q ss_pred CCCCCCcccCCchhhccCCHHHHHHHHH--HHHHHHHHHHHhhhhcCCCCcE-EEEE
Q 011002 258 PCSGTGVISKDESVKTSKSLEDIQKCSY--LQKQLILAAIDMVDANSKSGGY-IVYS 311 (496)
Q Consensus 258 PCSg~Gvi~r~p~i~~~~s~~~i~~l~~--lQ~~LL~~A~~~L~~~lkpGG~-LVYS 311 (496)
..-+.+++. .-..+++..++.| +|||. +||+
T Consensus 110 -------------------iavihhlsT~~RR~~~l~e~~r~l----rpgg~~lvyv 143 (293)
T KOG1331|consen 110 -------------------IAVIHHLSTRERRERALEELLRVL----RPGGNALVYV 143 (293)
T ss_pred -------------------hhhhhhhhhHHHHHHHHHHHHHHh----cCCCceEEEE
Confidence 112222332 2234677778877 99996 5554
No 376
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.56 E-value=9.3 Score=37.38 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..||-.|++. +|.+..++..+. ....|+.++.+.. ... .+..+.-..+.++..|..+..... ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~-~~~---~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDR-MKK---SLQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchH-HHH---HHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467899999886 688888887664 3347888877643 222 222222234667788887642110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 57999998764
No 377
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.40 E-value=7 Score=38.41 Aligned_cols=77 Identities=9% Similarity=0.090 Sum_probs=48.4
Q ss_pred CCCeEeecccC-CcHHHHHHHHHcCCC-cEEEEEeCCH--HHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------
Q 011002 178 EKERVIDMAAA-PGGKTTYIAALMKNT-GLIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 178 ~g~~VLDlcAG-pGgktl~lA~l~~~~-g~V~AvDis~--~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-------- 245 (496)
.+.+||=.|+| ++|.+..++..+... ..|+.++.+. ..++.+... ++. ++.++..|..+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~---~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR---LPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh---cCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999986 688998888765433 4788887653 334443332 332 3556677877642110
Q ss_pred CCCCCCEEEECCC
Q 011002 246 GLNTVDRVLLDAP 258 (496)
Q Consensus 246 ~~~~FD~VLlDpP 258 (496)
..+.+|.++.++-
T Consensus 82 ~~g~iD~li~nAG 94 (256)
T PRK07889 82 HVDGLDGVVHSIG 94 (256)
T ss_pred HcCCCcEEEEccc
Confidence 1267999998763
No 378
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.33 E-value=21 Score=34.98 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=53.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.|++ |+.+.+++..+ .....|+.++.++..++.+...+...|. .+.++..|..+.... + ..+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 46678877766 45666666543 3345788889999988888888776654 467778888754211 0 115
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+..+..
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999997654
No 379
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.17 E-value=9.4 Score=36.66 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc-----cc----c-C
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP-----KV----L-G 246 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~-----~~----~-~ 246 (496)
.|.+||=.| |+|+.+..++..+.. ...|++++.++..++.+...+...+-..+.++..|..+.. .. . .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 467888887 567788888776543 3489999999998888877776655434445556654211 00 0 0
Q ss_pred -CCCCCEEEECCC
Q 011002 247 -LNTVDRVLLDAP 258 (496)
Q Consensus 247 -~~~FD~VLlDpP 258 (496)
.+.+|.|+..+-
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 146899998764
No 380
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.04 E-value=6.3 Score=35.42 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=53.8
Q ss_pred EeecccCCcHHHHHHHHHcCC--CcEEEEEeCC--HHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 182 VIDMAAAPGGKTTYIAALMKN--TGLIYANEMK--ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~--~g~V~AvDis--~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
||=.|++ |+.+..++..+-. ...|+.+..+ ...+..+...+...+ .++.++..|........ ..+.
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 4444544 6677777665433 2478888888 788888888888777 67889999987642110 1267
Q ss_pred CCEEEECCCCCCCC
Q 011002 250 VDRVLLDAPCSGTG 263 (496)
Q Consensus 250 FD~VLlDpPCSg~G 263 (496)
+|.++.++.....+
T Consensus 81 ld~li~~ag~~~~~ 94 (167)
T PF00106_consen 81 LDILINNAGIFSDG 94 (167)
T ss_dssp ESEEEEECSCTTSB
T ss_pred cccccccccccccc
Confidence 99999976544433
No 381
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.98 E-value=14 Score=36.40 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCCeEeecccCCc-HHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc--------cCC
Q 011002 178 EKERVIDMAAAPG-GKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpG-gktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~--------~~~ 247 (496)
.|..+|=.|++.| |.+..++..+.. ...|+.++.+....+.+.+.....|. ..++..|..+.... ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3667888888775 677777765543 34777777764322333333333343 23456787764211 012
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 67999888664
No 382
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=84.85 E-value=4.8 Score=41.87 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=34.3
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~--g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|+ |+.++.++++.+.. ..|+++|.++.+++.++ .+|.+.
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 35678999998865 55555444433222 26999999999987664 467754
No 383
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=84.64 E-value=3.1 Score=41.99 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=47.7
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCC-ccccCCCC
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNEL-PKVLGLNT 249 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l-~~~~~~~~ 249 (496)
+-.++||+.|| +.++.||.++.+.++++-.+ .+++.-.+.+..+.+++ +|+.. |.....|...- .+.-....
T Consensus 141 ~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 141 AYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred hcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhccCCCC
Confidence 34689999998 66777888888888776433 67777777777766654 57654 33333443221 11111356
Q ss_pred CCEEE
Q 011002 250 VDRVL 254 (496)
Q Consensus 250 FD~VL 254 (496)
+|.|+
T Consensus 216 Vd~vy 220 (336)
T KOG1197|consen 216 VDAVY 220 (336)
T ss_pred ceeee
Confidence 77774
No 384
>PRK08589 short chain dehydrogenase; Validated
Probab=84.51 E-value=21 Score=35.22 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.|+ +||.+..++..+. ....|++++.+ ..+..+.+.+...+. ++.++..|..+..... ..+
T Consensus 5 ~~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 3567776665 4667777776543 34589999998 667766666665543 4667777876542110 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
..|.++.++..
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999998753
No 385
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.49 E-value=19 Score=34.87 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=54.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.|+ +|+.+..++..+.. ...|+.++.++..+..+...+...+. ++.++..|..+.... + ..+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3668887875 56777777765543 34899999999888888777776653 477788888754211 0 114
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 689999865
No 386
>PRK06139 short chain dehydrogenase; Provisional
Probab=84.25 E-value=21 Score=36.85 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+..||=.|+ +||.+..++..+.. ...|+.++.++..++.+...+...|. .+.++..|..+..... ..+
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4567776665 57788887775543 34899999999999998888887775 3556677876532110 125
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.++.++-..
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 799999976543
No 387
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=84.25 E-value=3.7 Score=42.84 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=34.2
Q ss_pred cCCCCCCeEeecccCCcHHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl---~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|| |+.++ .+|..++ ...|+++|.++.+++.+. .+|...
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~----~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMAK-ASRIIAIDINPAKFELAK----KLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCCe
Confidence 35678999998876 45544 4444443 126999999999987764 467754
No 388
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=84.01 E-value=21 Score=34.67 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=54.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||=.|+ +|+.+.+++..+... ..|+.++.+...+..+...+...+. ++.++..|..+..... ..+
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3678888884 566777777654433 4788889888888877777766554 3667778887643210 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+..+..
T Consensus 88 ~~d~li~~ag~ 98 (255)
T PRK06113 88 KVDILVNNAGG 98 (255)
T ss_pred CCCEEEECCCC
Confidence 68999986653
No 389
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.96 E-value=4.5 Score=42.02 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=33.6
Q ss_pred CCCCCCeEeecccCCcHHHHHH---HHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceE
Q 011002 175 APQEKERVIDMAAAPGGKTTYI---AALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 175 ~~~~g~~VLDlcAGpGgktl~l---A~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv 231 (496)
.+++|++||=.|+ |+.+..+ |..++ ...|+++|.++.+++.++ .+|+..+
T Consensus 181 ~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~----~~ga~~~ 233 (365)
T cd08277 181 KVEPGSTVAVFGL--GAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK----EFGATDF 233 (365)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCcE
Confidence 4678999998864 5555444 44442 126999999999887763 4677543
No 390
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=83.95 E-value=2.5 Score=42.31 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=59.9
Q ss_pred cccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc-cc-CCCCCCEEEECCCCCCC
Q 011002 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VL-GLNTVDRVLLDAPCSGT 262 (496)
Q Consensus 185 lcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~-~~-~~~~FD~VLlDpPCSg~ 262 (496)
+..-||+=.+ ++.+++...+++++|+.+.-.+.++.|+.. -..|.+...|+..... .. +..+=-+||+|||+--
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~- 137 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ- 137 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S-
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC-
Confidence 5567886554 445667778999999999999999999875 3578999999865210 01 1134569999999632
Q ss_pred CcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 011002 263 GVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 263 Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~ 330 (496)
..+...+. ..|..|++.. +.|+++. |.|--+...++.+++.
T Consensus 138 --------------~~dy~~v~----~~l~~a~kR~-----~~G~~~i----WYPi~~~~~~~~~~~~ 178 (245)
T PF04378_consen 138 --------------KDDYQRVV----DALAKALKRW-----PTGVYAI----WYPIKDRERVDRFLRA 178 (245)
T ss_dssp --------------TTHHHHHH----HHHHHHHHH------TTSEEEE----EEEESSHHHHHHHHHH
T ss_pred --------------chHHHHHH----HHHHHHHHhc-----CCcEEEE----EeecccHHHHHHHHHH
Confidence 12333332 3466777775 5564332 4455556666666653
No 391
>PRK08643 acetoin reductase; Validated
Probab=83.74 E-value=28 Score=33.65 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=52.3
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+..||=.| |+|+.+.+++..+-.. ..|+.++.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 34556444 6677888888765433 4899999999888888877776553 467778888764211 0 1246
Q ss_pred CCEEEECC
Q 011002 250 VDRVLLDA 257 (496)
Q Consensus 250 FD~VLlDp 257 (496)
.|.|+..+
T Consensus 80 id~vi~~a 87 (256)
T PRK08643 80 LNVVVNNA 87 (256)
T ss_pred CCEEEECC
Confidence 89999866
No 392
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.60 E-value=6.2 Score=41.33 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=69.2
Q ss_pred HHHhcCCCCCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEE-Eec-CCCCCccccCC
Q 011002 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIV-CNY-DGNELPKVLGL 247 (496)
Q Consensus 170 ~v~~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v-~~~-D~~~l~~~~~~ 247 (496)
+...+.+++|+.|.=+|+|-=|.+..+...+...+.|+|+|+++.+++.++ .+|.+.+.- ... |.-.....+..
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCceeecchhhhhHHHHHHHhcC
Confidence 345667899999999998866666555555556789999999999998765 477754211 111 11111111222
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
+..|.+|- |.|. .+.++.|+.++ .++|..|..--.
T Consensus 253 gG~d~~~e---~~G~-------------------------~~~~~~al~~~----~~~G~~v~iGv~ 287 (366)
T COG1062 253 GGADYAFE---CVGN-------------------------VEVMRQALEAT----HRGGTSVIIGVA 287 (366)
T ss_pred CCCCEEEE---ccCC-------------------------HHHHHHHHHHH----hcCCeEEEEecC
Confidence 46777754 4333 12477788887 779998876543
No 393
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.59 E-value=14 Score=35.62 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.|++ |+.+.+++..+-..| .|++++.+. ...+...+...+. .+.++..|..+..... ..+
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR-RFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46778877774 667888877665444 788888764 3445555555552 4677788887643211 124
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+..+-.
T Consensus 80 ~~d~li~~ag~ 90 (248)
T TIGR01832 80 HIDILVNNAGI 90 (248)
T ss_pred CCCEEEECCCC
Confidence 68999987643
No 394
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.54 E-value=17 Score=36.25 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=48.0
Q ss_pred CCCeEeecccC-CcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAG-pGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..+|=.|++ ++|.+..+|..+...| .|+.++.+....+.+.+....+| .+.++..|..+..... ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 36788888887 5889998888764334 67666655332333443334444 2445677876532110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+..|.++.++-
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57899999874
No 395
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.51 E-value=1.6 Score=45.75 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=28.0
Q ss_pred CeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHR 225 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r 225 (496)
.+|||+|+|||.-...+-...+.--.++-++.|+. +......+++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~ 159 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAE 159 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHh
Confidence 45999999999766555555544335666677764 3334444444
No 396
>PRK12742 oxidoreductase; Provisional
Probab=83.49 E-value=15 Score=34.95 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=42.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeC-CHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-CCCCCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM-KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVD 251 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDi-s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-~~~~FD 251 (496)
.+.+||=.|+ +|+.+..++..+...| .|+.... +++.++.+.. ..++ .++..|..+.... . ..+.+|
T Consensus 5 ~~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~~~~---~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---ETGA---TAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---HhCC---eEEecCCCCHHHHHHHHHHhCCCc
Confidence 4677886654 7778888887665444 6766654 4555544433 2333 3455676543211 1 125689
Q ss_pred EEEECCC
Q 011002 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDpP 258 (496)
.|+..+-
T Consensus 78 ~li~~ag 84 (237)
T PRK12742 78 ILVVNAG 84 (237)
T ss_pred EEEECCC
Confidence 9998664
No 397
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.46 E-value=19 Score=35.53 Aligned_cols=79 Identities=11% Similarity=0.034 Sum_probs=45.6
Q ss_pred CCCeEeeccc-CCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAA-APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcA-GpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|.+||=.|+ |++|.+..+|..+... ..|+.++......+.+.+.....+. ..++..|..+..... ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS--DLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCC--cceeeccCCCHHHHHHHHHHHHHHh
Confidence 4678888888 5788888888766433 4677665432222223222233332 235667876642110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 83 g~iD~lvnnAG 93 (260)
T PRK06997 83 DGLDGLVHSIG 93 (260)
T ss_pred CCCcEEEEccc
Confidence 67999999774
No 398
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.45 E-value=25 Score=33.99 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.|+ +|+.+.+++..+-. ...|+.++.++..++.+...+...+. ++.++..|..+.... + ..+
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4567886665 66788888775543 34899999999888877777766553 467778888653211 0 115
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+-
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899998763
No 399
>PRK06197 short chain dehydrogenase; Provisional
Probab=83.41 E-value=21 Score=35.97 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=53.1
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~-g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|.+||=.| |+|+.+.+++..+... ..|+.++.+......+...+... +-.++.++..|..+..... ..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 467788666 4678888888755433 47888888888877666665543 2234777888887653210 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.|+.++.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899999764
No 400
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.34 E-value=17 Score=36.56 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~-~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.+.+||-.|+ +|+.+..++..+. ....|+.++.+. ..+..+...+...|. ++.++..|..+.... + ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678887775 5667777776554 334788887764 345555555555453 466778888763211 1 01
Q ss_pred CCCCEEEECCCCCC-CCcccCCchhhccCCHHHH----HHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 248 NTVDRVLLDAPCSG-TGVISKDESVKTSKSLEDI----QKCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 248 ~~FD~VLlDpPCSg-~Gvi~r~p~i~~~~s~~~i----~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+.+|.|+..+..+. .+.+ ...+.+++ ......-..++..+...+ +++|.||+.+-
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~-------~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~----~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSL-------EDITAEQLDKTFKTNIYSYFHMTKAALPHL----KQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCc-------ccCCHHHHHHHHhhhhHHHHHHHHHHHHHH----hhCCeEEEEec
Confidence 46899998663211 1111 01122222 112222344555555554 67788888664
No 401
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.25 E-value=26 Score=33.16 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=52.2
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.|+ +|+.+.+++..+...| .|++++.++..+..+...+...+. .+.++..|..+.... + ..+.
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 567886775 7889988887654333 789999998888777766665554 366666887653211 1 0145
Q ss_pred CCEEEECCC
Q 011002 250 VDRVLLDAP 258 (496)
Q Consensus 250 FD~VLlDpP 258 (496)
+|.|+..+.
T Consensus 83 id~vi~~ag 91 (246)
T PRK05653 83 LDILVNNAG 91 (246)
T ss_pred CCEEEECCC
Confidence 799988554
No 402
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.99 E-value=27 Score=33.53 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=66.5
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEE-EeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYA-NEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~A-vDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
+.+||-.| |+|+.+.+++..+... ..|+. ...+...+......+...+. ++.++..|....... . ..+
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 56788777 5677888887755433 34544 34455555555555665554 355666777653211 0 014
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHH----HHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK----CSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~----l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
.+|.|+..+.+...+-+. ..+...+.. .......++..++..+ +.+|.+|+.+...
T Consensus 84 ~~d~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~----~~~~~iv~~sS~~ 143 (252)
T PRK06077 84 VADILVNNAGLGLFSPFL-------NVDDKLIDKHISTDFKSVIYCSQELAKEM----REGGAIVNIASVA 143 (252)
T ss_pred CCCEEEECCCCCCCCChh-------hCCHHHHHHHHhHhCHHHHHHHHHHHHHh----hcCcEEEEEcchh
Confidence 689999977543332211 111121111 1112233455555554 6678888876543
No 403
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=82.95 E-value=16 Score=37.45 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=47.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC---cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-CCCCCCEEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT---GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-GLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~---g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-~~~~FD~VL 254 (496)
|.+||=.|+ +|+.+.+++..+... ..|+++|.+......+...+ ...++.++.+|.++..... ....+|.|+
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 667886665 689999988865432 36888887765443332222 2245778888988753211 014589999
Q ss_pred ECCC
Q 011002 255 LDAP 258 (496)
Q Consensus 255 lDpP 258 (496)
..+-
T Consensus 80 h~Ag 83 (324)
T TIGR03589 80 HAAA 83 (324)
T ss_pred ECcc
Confidence 8653
No 404
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.94 E-value=30 Score=33.02 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.|+ +|+.+.+++..+. ....|++++.+...+..+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 567886665 6778887776543 334899999998877777776665543 477788888763211 0 1136
Q ss_pred CCEEEECCCCC
Q 011002 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 FD~VLlDpPCS 260 (496)
+|.|+..+...
T Consensus 84 ~d~vi~~ag~~ 94 (251)
T PRK12826 84 LDILVANAGIF 94 (251)
T ss_pred CCEEEECCCCC
Confidence 89999876543
No 405
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.90 E-value=30 Score=33.43 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.|+ .|+.+..++..+. .+..|+.++.++..+..+...+...|. ++.++..|..+..... ..+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4778887775 6777777776553 345899999999888888777776664 3667778876532110 125
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+-
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 406
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.68 E-value=22 Score=34.72 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCCeEeecccCC-cHHHHHHHHHcCCCc-EEEEEeC-----------CHHHHHHHHHHHHHcCCceEEEEecCCCCCccc
Q 011002 178 EKERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEM-----------KASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 178 ~g~~VLDlcAGp-Ggktl~lA~l~~~~g-~V~AvDi-----------s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~ 244 (496)
.|.+||=.|++. ||.+.+++..+...| .|+..+. +...+..+.+.+...|. ++.++..|..+....
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 577899999874 688888877654333 6666542 23334455566666664 466777887654211
Q ss_pred c--------CCCCCCEEEECCCCC
Q 011002 245 L--------GLNTVDRVLLDAPCS 260 (496)
Q Consensus 245 ~--------~~~~FD~VLlDpPCS 260 (496)
. ..+..|.|+.++.+.
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCC
Confidence 0 125689999988654
No 407
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.62 E-value=20 Score=37.01 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=51.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccC-CCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLG-LNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~-~~~FD~VLl 255 (496)
.+.+||=.| |+|..+.++++.+...| .|++++.+......+...+.. ..++.++.+|..+...... ...+|.|+-
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 367888776 47999999988665444 788888776554443333221 2457788888876432110 135899998
Q ss_pred CCCCCCC
Q 011002 256 DAPCSGT 262 (496)
Q Consensus 256 DpPCSg~ 262 (496)
-+..++.
T Consensus 86 ~A~~~~~ 92 (353)
T PLN02896 86 VAASMEF 92 (353)
T ss_pred CCccccC
Confidence 7755443
No 408
>PRK05993 short chain dehydrogenase; Provisional
Probab=82.60 E-value=17 Score=35.99 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=46.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c------CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L------GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~------~~~ 248 (496)
+.+||=.|| +|+.+.+++..+.. +..|++++.++..++.+.. .+ +.++..|..+.... . ..+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 557776665 68888888876643 3489999999887765543 23 45667787653211 0 014
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.|+.++.
T Consensus 76 ~id~li~~Ag 85 (277)
T PRK05993 76 RLDALFNNGA 85 (277)
T ss_pred CccEEEECCC
Confidence 6899998653
No 409
>PRK12743 oxidoreductase; Provisional
Probab=82.51 E-value=18 Score=35.20 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=50.1
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~Av-Dis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
+.+||=.|+ +|+.+..++..+-..| .|+.+ ..+...++.+...+...|. ++.++..|..+.... . ..+
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777775 5778888887664334 66665 4566777777777776663 467778887764211 0 114
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
..|.|+..+
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 689999865
No 410
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.11 E-value=23 Score=34.73 Aligned_cols=81 Identities=11% Similarity=0.040 Sum_probs=54.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.+.+||=.|+ +|+.+.+++..+...| .|++++.++..+..+...+...+. .++.++..|..+.... + ..
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678887775 4778888887654333 899999988877776666654432 4577778888764321 1 01
Q ss_pred CCCCEEEECCCC
Q 011002 248 NTVDRVLLDAPC 259 (496)
Q Consensus 248 ~~FD~VLlDpPC 259 (496)
+.+|.|+..+-.
T Consensus 85 ~~~d~li~~ag~ 96 (276)
T PRK05875 85 GRLHGVVHCAGG 96 (276)
T ss_pred CCCCEEEECCCc
Confidence 468999987643
No 411
>PRK05876 short chain dehydrogenase; Provisional
Probab=82.04 E-value=31 Score=34.30 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.|++ |+.+.+++..+... ..|+.+|.+...++.+...+...|. .+.++..|..+..... ..+
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 36678877764 77788887765433 4788899999888877777765554 4667778887643210 124
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
..|.|+.++.-
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 68999987753
No 412
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.96 E-value=7.7 Score=39.60 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=56.2
Q ss_pred hcCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEe-cCC----CCCccccC
Q 011002 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCN-YDG----NELPKVLG 246 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~-~D~----~~l~~~~~ 246 (496)
...+++|++||-.|+|. |..++.+|..++- ..|++++.++.+...+.+ +|.+.+.-.. .+. ..+.....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHhC
Confidence 34577899999865432 3333444444431 138899888887766533 4765432211 110 11111222
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
...||+||- |+|.. ..+..+++.+ +++|+++..
T Consensus 232 ~~~~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIE---CTGAE-------------------------SCIQTAIYAT----RPGGTVVLV 264 (343)
T ss_pred CCCCCEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 345999875 44431 1255667776 899998753
No 413
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.87 E-value=34 Score=33.24 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.+.+||-.|++ |+.+..++..+. ....|+.++.++..++.+...+...+. .++.++..|..+..... ..
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36778877764 677887777554 334899999999988888777765321 34777888887642110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 57899998653
No 414
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=81.80 E-value=8.9 Score=39.78 Aligned_cols=97 Identities=22% Similarity=0.271 Sum_probs=57.3
Q ss_pred CCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC----ccccCCCC
Q 011002 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLGLNT 249 (496)
Q Consensus 175 ~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l----~~~~~~~~ 249 (496)
.+++|.+||=.|+|. |..++.+|+.++ ...|+++|.++.+++.+. .+|...+ +..+...+ .... ...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~----~~g~~~~--i~~~~~~~~~~v~~~~-~~~ 254 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAK----ELGATHV--INPKEEDLVAAIREIT-GGG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCcEE--ecCCCcCHHHHHHHHh-CCC
Confidence 467889999886533 334445555543 236999999998876554 3566432 22221111 1111 246
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
||+|+- |+|.+ ..+..+++.+ +++|+++..
T Consensus 255 ~d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (365)
T cd08278 255 VDYALD---TTGVP-------------------------AVIEQAVDAL----APRGTLALV 284 (365)
T ss_pred CcEEEE---CCCCc-------------------------HHHHHHHHHh----ccCCEEEEe
Confidence 999874 55432 1356677776 889988754
No 415
>PRK12744 short chain dehydrogenase; Provisional
Probab=81.78 E-value=19 Score=35.00 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=66.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeC----CHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-------
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEM----KASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL------- 245 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDi----s~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~------- 245 (496)
.+.+||=.| |+|+.+.+++..+...| .|+.++. +...++.+.+.+...+. ++.++..|..+.....
T Consensus 7 ~~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHH
Confidence 356788666 56778888887665434 5555543 23444455555555553 4677788887642211
Q ss_pred -CCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 246 -GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCS----YLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 246 -~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~----~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
..+..|.|+.++- .....+ .+..+.++..... .-...++..++..+ +++|.+++.++|.
T Consensus 85 ~~~~~id~li~~ag-----~~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~----~~~~~iv~~~ss~ 148 (257)
T PRK12744 85 AAFGRPDIAINTVG-----KVLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHL----NDNGKIVTLVTSL 148 (257)
T ss_pred HhhCCCCEEEECCc-----ccCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhh----ccCCCEEEEecch
Confidence 1246899988652 211111 1122333332211 11223455555554 6778887765553
No 416
>PLN02780 ketoreductase/ oxidoreductase
Probab=81.63 E-value=27 Score=35.86 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=42.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcC-CceEEEEecCCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMG-VTNTIVCNYDGN 239 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g-~~nv~v~~~D~~ 239 (496)
.|..||=.|| +||.+.++|..+... ..|+.++.+++.++.+.+.+.... -..+..+..|..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3678887775 567787777765433 489999999999988888776532 224555556665
No 417
>PRK06179 short chain dehydrogenase; Provisional
Probab=81.62 E-value=12 Score=36.78 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=45.4
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+..||=.| |+|+.+.+++..+... ..|++++.++..+.. ..++.++..|..+.... + ..+.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 45677677 5688898888765433 489999988755431 13466777787664211 0 1256
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.|+.++-.
T Consensus 74 ~d~li~~ag~ 83 (270)
T PRK06179 74 IDVLVNNAGV 83 (270)
T ss_pred CCEEEECCCC
Confidence 8999986643
No 418
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.45 E-value=6.3 Score=40.91 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=34.3
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
..+++|++||=.|+ |+.++.++++....| .|+++|.++.+++.+ +.+|...
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~----~~~Ga~~ 235 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA----KKFGVTE 235 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCce
Confidence 45678999998864 566554444332223 699999999988765 4477653
No 419
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.36 E-value=44 Score=32.44 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=52.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-CCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-~~~~FD~ 252 (496)
.+.+||=.|+ +|+.+..++..+.. ...|++++.++..++.+...+....-.++.++..|..+.... . ..+..|.
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3667777775 56678777765533 348999999998888877777654333566777887653211 0 1257899
Q ss_pred EEECC
Q 011002 253 VLLDA 257 (496)
Q Consensus 253 VLlDp 257 (496)
++.++
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 98865
No 420
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.20 E-value=12 Score=37.63 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=57.1
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
...++|++||=.| .|+.+..++++....| .|++++.++++.+.++. +|+..+..... . .....||.
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~----~---~~~~~~d~ 217 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVETVLPDEA----E---SEGGGFDV 217 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcEEeCccc----c---ccCCCCCE
Confidence 3467889998875 4666666555443333 68999999988877664 67654322211 1 12256999
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
|+- |+|.+ ..+..+++.| +++|+++.
T Consensus 218 vid---~~g~~-------------------------~~~~~~~~~l----~~~g~~v~ 243 (319)
T cd08242 218 VVE---ATGSP-------------------------SGLELALRLV----RPRGTVVL 243 (319)
T ss_pred EEE---CCCCh-------------------------HHHHHHHHHh----hcCCEEEE
Confidence 874 55432 1245566666 89998885
No 421
>PRK06182 short chain dehydrogenase; Validated
Probab=81.06 E-value=18 Score=35.55 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=47.1
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+..||=.| |+|+.+.+++..+... ..|++++.+...++.+.. . ++.++..|..+.... + ..+.
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45677555 5678888888866433 489999999887655432 2 355667787664221 1 1247
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.|+.++.-
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999987643
No 422
>PRK07060 short chain dehydrogenase; Provisional
Probab=81.04 E-value=18 Score=34.57 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-CCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-GLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-~~~~FD~ 252 (496)
.+.++|=.| |+|+.+.+++..+...| .|+.++.++..+..+... .+ ..++..|..+.... + ..+.+|.
T Consensus 8 ~~~~~lItG-a~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~---~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVLVTG-ASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---TG---CEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC---CeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 466777544 55778887777654333 899999988766544432 23 23455666553211 1 1246899
Q ss_pred EEECCCCCC
Q 011002 253 VLLDAPCSG 261 (496)
Q Consensus 253 VLlDpPCSg 261 (496)
|+..+..+.
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 999876543
No 423
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=80.97 E-value=1.8 Score=42.90 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
....++|+||+-|...-||... +-+.++-+|.|-.+++..+.. +..++. +....+|-..++ +..++||+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~-~~~~v~DEE~Ld--f~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE-TSYFVGDEEFLD--FKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE-EEEEecchhccc--ccccchhhhhh
Confidence 4678999999999999888654 356899999999999876542 112222 334456766665 44589999985
No 424
>PRK05872 short chain dehydrogenase; Provisional
Probab=80.76 E-value=36 Score=34.17 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=50.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||-.| |+||.+..++..+... ..|+.++.+...++.+...+.. + ..+..+..|..+..... ..+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 477888666 4567788887766433 4899999999887776655431 2 23455557876542110 125
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+.++-.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 79999997743
No 425
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.74 E-value=9 Score=41.28 Aligned_cols=88 Identities=10% Similarity=0.056 Sum_probs=55.7
Q ss_pred CCCCeEeecccCCcHHHHH-HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKERVIDMAAAPGGKTTY-IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~-lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.+|++|+=+|+|+=|..+. ++..++ ..|+.+|+++.|+..+. .+|+..+. . .... ..+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~----~~G~~~~~---~-----~e~v--~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAA----MEGYEVMT---M-----EEAV--KEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHH----hcCCEEcc---H-----HHHH--cCCCEEEE
Confidence 5799999999998555544 333332 47899999999877654 36763221 1 1122 45899986
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHH-HHhhhhcCCCCcEEEEEe
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAA-IDMVDANSKSGGYIVYST 312 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A-~~~L~~~lkpGG~LVYST 312 (496)
|+|.. .++..+ +..+ ++||+|+...
T Consensus 264 ---atG~~-------------------------~~i~~~~l~~m----k~GgilvnvG 289 (413)
T cd00401 264 ---TTGNK-------------------------DIITGEHFEQM----KDGAIVCNIG 289 (413)
T ss_pred ---CCCCH-------------------------HHHHHHHHhcC----CCCcEEEEeC
Confidence 54431 124443 5555 9999998765
No 426
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=80.71 E-value=38 Score=32.43 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=54.3
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+..||=.|+ +|+.+.+++..+...| .|+.++.+......+...+...+. ++.++..|..+..... ..+.
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567777775 5778888877554444 899999999888877777766543 4777788887542110 0146
Q ss_pred CCEEEECCCCC
Q 011002 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 FD~VLlDpPCS 260 (496)
.|.|+..+...
T Consensus 81 ~d~vi~~ag~~ 91 (250)
T TIGR03206 81 VDVLVNNAGWD 91 (250)
T ss_pred CCEEEECCCCC
Confidence 89999876543
No 427
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=80.64 E-value=26 Score=34.00 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+.+||=.| |+|+.+.+++..+... ..|+.+|.+...+..+...+ + .++.++..|..+..... ..+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55677666 6678888888766433 48999999988777665443 2 24677778876542210 1146
Q ss_pred CCEEEECCC
Q 011002 250 VDRVLLDAP 258 (496)
Q Consensus 250 FD~VLlDpP 258 (496)
.|.|+..+.
T Consensus 81 id~li~~ag 89 (257)
T PRK07067 81 IDILFNNAA 89 (257)
T ss_pred CCEEEECCC
Confidence 899988654
No 428
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.61 E-value=9.3 Score=39.31 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCCeEeecccCCcHHHHHHHHHcCCC-c-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecC-CC----CCccccCCCC
Q 011002 177 QEKERVIDMAAAPGGKTTYIAALMKNT-G-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYD-GN----ELPKVLGLNT 249 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~lA~l~~~~-g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D-~~----~l~~~~~~~~ 249 (496)
++|.+||=.|+ |+.+..++++.... . .|++++.++.+...+ +.+|++.+...... .. .+........
T Consensus 176 ~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 176 GAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELA----REFGADATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHHHHHHHHHHhCCCC
Confidence 47888888753 66665544433322 2 799999998887655 35677543221111 10 0111112246
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
||+||- |+|.+ ..+..+++.+ +++|+++..
T Consensus 250 ~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIE---ASGHP-------------------------AAVPEGLELL----RRGGTYVLV 279 (361)
T ss_pred CcEEEE---CCCCh-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 998874 44432 1256667776 999998754
No 429
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=80.56 E-value=3.2 Score=45.64 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=53.8
Q ss_pred eEeecccCCcHHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCccccCCCCCCEEEE
Q 011002 181 RVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 181 ~VLDlcAGpGgkt---l~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
+|+=+|||-|-.. +.+|.....+-.++|+|.+|.++-.|.. ....+.++ |+++..|++.++.. ....|+++.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap--~eq~DI~VS 445 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP--REQADIIVS 445 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc--hhhccchHH
Confidence 5778899988654 4455555556689999999999988876 44444544 89999999998743 267888864
No 430
>PRK06482 short chain dehydrogenase; Provisional
Probab=80.43 E-value=21 Score=35.06 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=48.6
Q ss_pred eEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~FD 251 (496)
+||=.| |+|+.+.+++..+... ..|++++.++..++.+.... + .++.++..|..+.... + ..+.+|
T Consensus 4 ~vlVtG-asg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 4 TWFITG-ASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred EEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 566444 4788999888765433 48999999988776655432 2 2567778888764211 0 124689
Q ss_pred EEEECCCCC
Q 011002 252 RVLLDAPCS 260 (496)
Q Consensus 252 ~VLlDpPCS 260 (496)
.|+..+-..
T Consensus 79 ~vi~~ag~~ 87 (276)
T PRK06482 79 VVVSNAGYG 87 (276)
T ss_pred EEEECCCCC
Confidence 999865443
No 431
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.43 E-value=25 Score=33.48 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~Av-Dis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
+.+||=.| |+|+.+..++..+.. ...|+.+ +.++..+..+...+...+ .++.+...|..+.... + ..+
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 44677666 468888888775533 3477777 888888877777766543 3477888888764321 1 013
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+...
T Consensus 83 ~id~vi~~ag~~ 94 (247)
T PRK05565 83 KIDILVNNAGIS 94 (247)
T ss_pred CCCEEEECCCcC
Confidence 699999876543
No 432
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=79.89 E-value=2.9 Score=41.00 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=74.8
Q ss_pred CcchhHHHhcCCC--------CCCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEec
Q 011002 165 ASSFLPVMALAPQ--------EKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNY 236 (496)
Q Consensus 165 ~sS~l~v~~L~~~--------~g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~ 236 (496)
.+|-+++.+|... ..-++||+||=+..-....... -.|+++|+++. .-.+...
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------~~~I~qq 90 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------HPGILQQ 90 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc----eeeEEeecCCC---------------CCCceee
Confidence 4666777766421 1258999999865433322222 25999999862 2335667
Q ss_pred CCCCCccc-cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcE-----EEE
Q 011002 237 DGNELPKV-LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGY-----IVY 310 (496)
Q Consensus 237 D~~~l~~~-~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~-----LVY 310 (496)
|..+.|-. ...+.||+|.+ +=|+.=-|+. . .--++|..+.++| +|+|. |+.
T Consensus 91 DFm~rplp~~~~e~FdvIs~------SLVLNfVP~p------~-------~RG~Ml~r~~~fL----~~~g~~~~~~LFl 147 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISL------SLVLNFVPDP------K-------QRGEMLRRAHKFL----KPPGLSLFPSLFL 147 (219)
T ss_pred ccccCCCCCCcccceeEEEE------EEEEeeCCCH------H-------HHHHHHHHHHHHh----CCCCccCcceEEE
Confidence 77665421 23478999975 1122111111 1 1124788999997 99999 665
Q ss_pred Ee---CCCC-CcCCHHHHHHHHHhCCcEEee
Q 011002 311 ST---CSIM-VTENEAVIDYALKKRDVKLVP 337 (496)
Q Consensus 311 ST---CSl~-~eENE~vV~~~L~~~~~~lv~ 337 (496)
.+ |--+ ..=+++...+++..-++..+.
T Consensus 148 VlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 148 VLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred EeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 53 3211 123556666667666665554
No 433
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.69 E-value=20 Score=36.19 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=47.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCcc---ccCCCCCCE
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPK---VLGLNTVDR 252 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~---~~~~~~FD~ 252 (496)
.|.+||-.| |+|+.+.+++..+-..| .|+++..+..............+. .++.++.+|..+... .+ ..+|.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~ 80 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI--DGCET 80 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH--cCCCE
Confidence 366788776 67999999887654434 777776665544333222222232 357788888876532 22 35899
Q ss_pred EEECC
Q 011002 253 VLLDA 257 (496)
Q Consensus 253 VLlDp 257 (496)
|+..+
T Consensus 81 vih~A 85 (325)
T PLN02989 81 VFHTA 85 (325)
T ss_pred EEEeC
Confidence 98865
No 434
>PRK06114 short chain dehydrogenase; Provisional
Probab=79.66 E-value=23 Score=34.34 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=50.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~-~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.+..+|=.| |+|+.+.+++..+... ..|+.++.+. ..++.+.+.+...+. ++.++..|..+..... ..
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR-RAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356777666 6677888888765443 4888888764 345666666665553 4666778876542110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+..|.|+.++.
T Consensus 85 g~id~li~~ag 95 (254)
T PRK06114 85 GALTLAVNAAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 56899998764
No 435
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.62 E-value=7.4 Score=39.60 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=42.1
Q ss_pred CCCC--CeEeeccc--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---cCCC
Q 011002 176 PQEK--ERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LGLN 248 (496)
Q Consensus 176 ~~~g--~~VLDlcA--GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~~~~ 248 (496)
+++| ++||=.|+ |.|..++.+|..++. ..|++++.++++.+.+.+. +|++.+. ..+-..+... ....
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~---lGa~~vi--~~~~~~~~~~i~~~~~~ 223 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSE---LGFDAAI--NYKTDNVAERLRELCPE 223 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh---cCCcEEE--ECCCCCHHHHHHHHCCC
Confidence 5555 89987775 344455556665531 2699999998887666543 6775432 2221222110 1124
Q ss_pred CCCEEEE
Q 011002 249 TVDRVLL 255 (496)
Q Consensus 249 ~FD~VLl 255 (496)
.+|.||-
T Consensus 224 gvd~vid 230 (345)
T cd08293 224 GVDVYFD 230 (345)
T ss_pred CceEEEE
Confidence 6998873
No 436
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=79.60 E-value=10 Score=39.53 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCCCCeEeecccCCcHHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 176 PQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 176 ~~~g~~VLDlcAGpGgktl~---lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
.++|++||=.|+ |+.++. +|..++ ..|++++.+..+... .++.+|.+.+.- ..+...+.... +.+|+
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~---~~~~~Ga~~vi~-~~~~~~~~~~~--~~~D~ 250 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFG--LKVTVISSSSNKEDE---AINRLGADSFLV-STDPEKMKAAI--GTMDY 250 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHCC--CEEEEEeCCcchhhh---HHHhCCCcEEEc-CCCHHHHHhhc--CCCCE
Confidence 468999998765 455544 444443 368888877655432 234577753321 11111111111 35898
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|+- |+|.. ..+..++++| ++||+++..
T Consensus 251 vid---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~v 277 (360)
T PLN02586 251 IID---TVSAV-------------------------HALGPLLGLL----KVNGKLITL 277 (360)
T ss_pred EEE---CCCCH-------------------------HHHHHHHHHh----cCCcEEEEe
Confidence 873 44421 1255677776 999998854
No 437
>PRK08278 short chain dehydrogenase; Provisional
Probab=79.56 E-value=25 Score=34.79 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHH-------HHHHHHHHHHHcCCceEEEEecCCCCCccc---c-
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKAS-------RLKSLTANLHRMGVTNTIVCNYDGNELPKV---L- 245 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~-------rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~- 245 (496)
.+.+||=.|| +|+.+.+++..+.. ...|++++.+.. .+..+...+...|. ++.++..|..+.... +
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHH
Confidence 3567775555 67888888875543 347888887653 24444444554443 467777888764311 1
Q ss_pred ----CCCCCCEEEECCCCC
Q 011002 246 ----GLNTVDRVLLDAPCS 260 (496)
Q Consensus 246 ----~~~~FD~VLlDpPCS 260 (496)
..+.+|.|+.++...
T Consensus 83 ~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 83 KAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHhCCCCEEEECCCCc
Confidence 114799999977543
No 438
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.52 E-value=31 Score=33.51 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=50.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.|.+||=.|++ |+.+..++..+... ..|+.++.+ ...+.+.+.+...+ .++.++..|..+.... + ..+
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788877765 56777777655433 478888777 55566666665555 3467778888764221 1 124
Q ss_pred CCCEEEECCCC
Q 011002 249 TVDRVLLDAPC 259 (496)
Q Consensus 249 ~FD~VLlDpPC 259 (496)
.+|.|+..+..
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986643
No 439
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.37 E-value=37 Score=32.71 Aligned_cols=77 Identities=19% Similarity=0.119 Sum_probs=51.8
Q ss_pred CeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--CCCCCCEEEEC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--GLNTVDRVLLD 256 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--~~~~FD~VLlD 256 (496)
.+||=.|+ +|+.+.+++..+.. +..|++.+.++..+..+.......+. ++.++..|..+..... .....|.|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 46776665 67888888776543 34899999888877777766666554 3677778876642211 11379999997
Q ss_pred CC
Q 011002 257 AP 258 (496)
Q Consensus 257 pP 258 (496)
+-
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 64
No 440
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.30 E-value=19 Score=34.90 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=46.9
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.|.+||-.|++ |+.+.+++..+.. ...|++++.++..++.+...+ +. .++..|..+.... + ..+
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~---~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV---GG---LFVPTDVTDEDAVNALFDTAAETYG 78 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc---CC---cEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 47789988874 7788888876643 348999999887766554433 22 3455666553211 1 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+.
T Consensus 79 ~id~vi~~ag 88 (255)
T PRK06057 79 SVDIAFNNAG 88 (255)
T ss_pred CCCEEEECCC
Confidence 6899988664
No 441
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=79.29 E-value=11 Score=38.34 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=32.0
Q ss_pred cCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCce
Q 011002 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230 (496)
Q Consensus 174 L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~n 230 (496)
+...+|.+||-.++|. |..+..+|..++ ...|++++.++.+.+.+ ..+|.+.
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~----~~~g~~~ 213 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVA----RAMGADE 213 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHH----HHcCCCE
Confidence 3334789999876543 334455555553 12689999988877644 3356643
No 442
>PRK08303 short chain dehydrogenase; Provisional
Probab=79.08 E-value=49 Score=33.67 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=50.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCC----------HHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMK----------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL- 245 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis----------~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~- 245 (496)
.|.+||-.|++ +|.+..++..+.. ...|+.++.+ ++.++.+.+.+...|. .+.++..|..+.....
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 46788888855 5677777776543 3478888876 3456666666666553 3566778887642110
Q ss_pred -------CCCCCCEEEECC
Q 011002 246 -------GLNTVDRVLLDA 257 (496)
Q Consensus 246 -------~~~~FD~VLlDp 257 (496)
..+.+|.++.++
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 125789999876
No 443
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.98 E-value=41 Score=32.12 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+.+||=.|+ +|+.+.+++..+.. ...|++++.++..+..+...+.. +. ++.++..|..+..... ..+.
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GG-RAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 556776654 56777777765443 34899999999888777666654 32 4777888887643211 1146
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.|+..+.+
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 8999997754
No 444
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.94 E-value=44 Score=32.27 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=53.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.|+ +||.+..++..+.. ...|+.++.++..++.+...+...+. ++.++..|..+.... + ..+.
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 567775555 47777777765543 34899999999988888887777663 466777887654211 0 1247
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.++.++..
T Consensus 84 id~li~~ag~ 93 (254)
T PRK07478 84 LDIAFNNAGT 93 (254)
T ss_pred CCEEEECCCC
Confidence 8999987753
No 445
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.74 E-value=29 Score=35.73 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCCeEeecccCCcHHHHHHHH-HcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAA-LMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~-l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|+.||=-|+|.|- +-.||. +.+....++.+|++++-.....+.+.++| .+.....|..+..+.. .-+
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 48999999998874 333333 33333578899999999999999999887 5666666776543221 236
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHH------HHHH--HHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQK------CSYL--QKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~------l~~l--Q~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
..|+++.|| |++..++- +..+.++++. ++++ -+.+|-..++ ++.|.||-. +|+
T Consensus 114 ~V~ILVNNA-----GI~~~~~l--l~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~------~~~GHIV~I-aS~ 174 (300)
T KOG1201|consen 114 DVDILVNNA-----GIVTGKKL--LDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE------NNNGHIVTI-ASV 174 (300)
T ss_pred CceEEEecc-----ccccCCCc--cCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh------cCCceEEEe-hhh
Confidence 789988876 44433321 2233344433 2222 2445555444 577888754 443
No 446
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.69 E-value=8 Score=38.85 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=57.3
Q ss_pred cCCCCCCeEeeccc--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---ccCCC
Q 011002 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDlcA--GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---~~~~~ 248 (496)
..+++|++||=.|+ +.|..++.+|..++ ..|++++.++++.+.+++ +|++.+ +......+.. .....
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~v--i~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDAV--FNYKTVSLEEALKEAAPD 210 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEE--EeCCCccHHHHHHHHCCC
Confidence 45778999987664 33444455666553 479999999888776643 677543 2222122211 01124
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.+|+|| | |+|. ..+..+++++ +++|+++..
T Consensus 211 gvd~vl-d--~~g~--------------------------~~~~~~~~~l----~~~G~iv~~ 240 (329)
T cd08294 211 GIDCYF-D--NVGG--------------------------EFSSTVLSHM----NDFGRVAVC 240 (329)
T ss_pred CcEEEE-E--CCCH--------------------------HHHHHHHHhh----ccCCEEEEE
Confidence 689887 3 3331 1255667776 999998754
No 447
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.64 E-value=28 Score=33.90 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-------CCCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------GLNT 249 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-------~~~~ 249 (496)
++.+||=.|++ |+.+..++..+. .+..|++++.++..++.+...+ ..+ .++.++..|..+..... ..+.
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 35667766654 677777776543 3348999999998887776655 222 35777788887643210 1256
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 8999986643
No 448
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=78.63 E-value=40 Score=38.59 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHH-cCCceEEEEecCCCCCccc---c-----CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHR-MGVTNTIVCNYDGNELPKV---L-----GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r-~g~~nv~v~~~D~~~l~~~---~-----~~ 247 (496)
.|.+||=.|+ +|+.+..++..+. .+..|+++|.+...++.+...+.. .+...+.++..|..+.... + ..
T Consensus 413 ~gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3667776665 5778888877554 335899999999888777666543 3444567778888764221 1 12
Q ss_pred CCCCEEEECCCCC
Q 011002 248 NTVDRVLLDAPCS 260 (496)
Q Consensus 248 ~~FD~VLlDpPCS 260 (496)
+.+|.|+.++-.+
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 4789999877543
No 449
>PRK08263 short chain dehydrogenase; Provisional
Probab=78.56 E-value=35 Score=33.64 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+..||=.| |+|+.+.+++..+. ....|++++.++..+..+...+ + ..+.++..|..+..... ..+.
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G-DRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c-CCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34677777 56888888887653 3347999999988776654432 2 23566678876542210 1146
Q ss_pred CCEEEECCC
Q 011002 250 VDRVLLDAP 258 (496)
Q Consensus 250 FD~VLlDpP 258 (496)
+|.|+..+-
T Consensus 78 ~d~vi~~ag 86 (275)
T PRK08263 78 LDIVVNNAG 86 (275)
T ss_pred CCEEEECCC
Confidence 899998654
No 450
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.41 E-value=14 Score=36.25 Aligned_cols=80 Identities=10% Similarity=0.052 Sum_probs=47.4
Q ss_pred CCCeEeecccC-CcHHHHHHHHHcCCCc-EEEEEeCCH--HHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------
Q 011002 178 EKERVIDMAAA-PGGKTTYIAALMKNTG-LIYANEMKA--SRLKSLTANLHRMGVTNTIVCNYDGNELPKVL-------- 245 (496)
Q Consensus 178 ~g~~VLDlcAG-pGgktl~lA~l~~~~g-~V~AvDis~--~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~-------- 245 (496)
.|.+||=.|++ ++|.+..++..+...| .|+.++.+. .+.......+...+ ..+.++..|..+.....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHHHHHHHHHHH
Confidence 46788999985 6899999888765444 666554432 23333333333322 23556678887642210
Q ss_pred CCCCCCEEEECCC
Q 011002 246 GLNTVDRVLLDAP 258 (496)
Q Consensus 246 ~~~~FD~VLlDpP 258 (496)
..+.+|.++.++.
T Consensus 84 ~~g~iD~lv~nag 96 (258)
T PRK07370 84 KWGKLDILVHCLA 96 (258)
T ss_pred HcCCCCEEEEccc
Confidence 1257999998764
No 451
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.24 E-value=64 Score=30.74 Aligned_cols=79 Identities=9% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
+|.++|=.|+ .|+.+..++..+. ....|+.++.++..+..+.+.+...+. ++.++..|..+.... . ..+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678887775 5778888877554 334799999999888877777766553 466777887653211 0 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+.
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 452
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=78.04 E-value=10 Score=38.68 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.7
Q ss_pred cCCCCCCeEeeccc--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceE
Q 011002 174 LAPQEKERVIDMAA--APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231 (496)
Q Consensus 174 L~~~~g~~VLDlcA--GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv 231 (496)
..+++|++||=.|+ |.|..++.+|..++ ..|++.+.++.+.+.+++. +|++.+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~v 201 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDA 201 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCcee
Confidence 35788999997765 23444455555543 3788888888887766542 577543
No 453
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=77.95 E-value=2 Score=38.51 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=47.9
Q ss_pred EEEEecCCCCCccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 231 v~v~~~D~~~l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
+.+..+|++.....+. ..||.|++|+= | -.++|++ |+ .+++....+++ ++||+|+-
T Consensus 33 L~L~~gDa~~~l~~l~-~~~Da~ylDgF-s----P~~nPel---Ws-----------~e~~~~l~~~~----~~~~~l~T 88 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD-ARFDAWYLDGF-S----PAKNPEL---WS-----------EELFKKLARLS----KPGGTLAT 88 (124)
T ss_dssp EEEEES-HHHHHHHB--T-EEEEEE-SS------TTTSGGG---SS-----------HHHHHHHHHHE----EEEEEEEE
T ss_pred EEEEEcHHHHHHHhCc-ccCCEEEecCC-C----CcCCccc---CC-----------HHHHHHHHHHh----CCCcEEEE
Confidence 4567788866433222 68999999962 1 2467775 44 33566666776 99998865
Q ss_pred EeCCCCCcCCHHHHHHHHHhCCcEEeec
Q 011002 311 STCSIMVTENEAVIDYALKKRDVKLVPC 338 (496)
Q Consensus 311 STCSl~~eENE~vV~~~L~~~~~~lv~~ 338 (496)
.||+ ..|...|...||.+...
T Consensus 89 ys~a-------~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 89 YSSA-------GAVRRALQQAGFEVEKV 109 (124)
T ss_dssp S--B-------HHHHHHHHHCTEEEEEE
T ss_pred eech-------HHHHHHHHHcCCEEEEc
Confidence 5554 45889999988887654
No 454
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=77.89 E-value=14 Score=35.50 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 011002 177 QEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 177 ~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~ 220 (496)
.+|++||..|+|+ |..+..++..++ ..|++++.++.+.+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 7899999999886 545555666543 58999999988877654
No 455
>PRK07775 short chain dehydrogenase; Provisional
Probab=77.83 E-value=47 Score=32.74 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=51.4
Q ss_pred CeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCCC
Q 011002 180 ERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNTV 250 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~F 250 (496)
..||=.| |+|+.+.+++..+... ..|++.+.+...+..+...+...+. ++.++..|..+..... ..+..
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTDPDSVKSFVAQAEEALGEI 88 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4677666 5688898888755433 4788888888877777666665553 4777778887643210 01468
Q ss_pred CEEEECCC
Q 011002 251 DRVLLDAP 258 (496)
Q Consensus 251 D~VLlDpP 258 (496)
|.|+..+-
T Consensus 89 d~vi~~Ag 96 (274)
T PRK07775 89 EVLVSGAG 96 (274)
T ss_pred CEEEECCC
Confidence 99998764
No 456
>PRK05866 short chain dehydrogenase; Provisional
Probab=77.41 E-value=52 Score=33.12 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=52.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~ 249 (496)
+.+||=.|+ +||.+.+++..+. .+..|++++.+.+.++.+...+...+. .+.++..|..+.... + ..+.
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456776664 5778888877553 334899999999988888877766554 366777888764211 1 1247
Q ss_pred CCEEEECC
Q 011002 250 VDRVLLDA 257 (496)
Q Consensus 250 FD~VLlDp 257 (496)
.|.|+..+
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89999854
No 457
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=77.35 E-value=4.2 Score=40.77 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=68.2
Q ss_pred CeEeecccCCcHHHHHHHHHcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHcCC-
Q 011002 180 ERVIDMAAAPGGKTTYIAALMK----NTGLIYANEMKA--------------------------SRLKSLTANLHRMGV- 228 (496)
Q Consensus 180 ~~VLDlcAGpGgktl~lA~l~~----~~g~V~AvDis~--------------------------~rl~~l~~nl~r~g~- 228 (496)
..|+++|+--|+.++.++..+. ..-.|+++|.=. --++..++|+.++|+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 4799999999999888776652 223688887411 135667777777776
Q ss_pred -ceEEEEecCCCC-CccccCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q 011002 229 -TNTIVCNYDGNE-LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGG 306 (496)
Q Consensus 229 -~nv~v~~~D~~~-l~~~~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG 306 (496)
.++.++.++..+ +|. .+...+-++-+|.= +. .--+..|...+.. |.|||
T Consensus 156 ~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~D---------------------lY---esT~~aLe~lypr----l~~GG 206 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPD-APIERIALLHLDCD---------------------LY---ESTKDALEFLYPR----LSPGG 206 (248)
T ss_dssp STTEEEEES-HHHHCCC--TT--EEEEEE------------------------SH---HHHHHHHHHHGGG----EEEEE
T ss_pred cccEEEECCcchhhhcc-CCCccEEEEEEecc---------------------ch---HHHHHHHHHHHhh----cCCCe
Confidence 568898887643 232 12245555555531 11 1112334444444 59999
Q ss_pred EEEEEeCCCCCcCCHHHHHHHHHhCCc
Q 011002 307 YIVYSTCSIMVTENEAVIDYALKKRDV 333 (496)
Q Consensus 307 ~LVYSTCSl~~eENE~vV~~~L~~~~~ 333 (496)
+||+-.-.. +.. ..-|+.|.+++++
T Consensus 207 iIi~DDY~~-~gc-r~AvdeF~~~~gi 231 (248)
T PF05711_consen 207 IIIFDDYGH-PGC-RKAVDEFRAEHGI 231 (248)
T ss_dssp EEEESSTTT-HHH-HHHHHHHHHHTT-
T ss_pred EEEEeCCCC-hHH-HHHHHHHHHHcCC
Confidence 999877555 333 3445667777753
No 458
>PRK05717 oxidoreductase; Validated
Probab=77.21 E-value=35 Score=33.06 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-------c-CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-------L-GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-------~-~~~ 248 (496)
.|.+||=.|+ +|+.+.+++..+.. ...|+.+|.++.....+.+. .+ .++.++..|..+.... . ..+
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3677886665 57788888876643 34899999888766554332 33 2467778888764211 0 114
Q ss_pred CCCEEEECCCCC
Q 011002 249 TVDRVLLDAPCS 260 (496)
Q Consensus 249 ~FD~VLlDpPCS 260 (496)
.+|.|+..+...
T Consensus 84 ~id~li~~ag~~ 95 (255)
T PRK05717 84 RLDALVCNAAIA 95 (255)
T ss_pred CCCEEEECCCcc
Confidence 689999977543
No 459
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.19 E-value=12 Score=37.96 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred hcCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCC-CCCccccCCCCC
Q 011002 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDG-NELPKVLGLNTV 250 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~-~~l~~~~~~~~F 250 (496)
.+.+.+|++||-.++|. |..+..+|..++- ..|++++.++...+.+. .+|...+....... ..+........|
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 34567899999986433 3344555555431 24888888887766553 45664322111111 111111222459
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|.||- |+|.+ ..+..+++.| +++|+++..
T Consensus 229 d~vld---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 257 (343)
T cd08236 229 DLVIE---AAGSP-------------------------ATIEQALALA----RPGGKVVLV 257 (343)
T ss_pred CEEEE---CCCCH-------------------------HHHHHHHHHh----hcCCEEEEE
Confidence 99974 54432 1356667776 899987654
No 460
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=76.89 E-value=7.3 Score=37.70 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=64.7
Q ss_pred ccC-CcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHH-HHcCCceEEEEecCCCCCcccc--------CC-CCCCEE
Q 011002 186 AAA-PGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANL-HRMGVTNTIVCNYDGNELPKVL--------GL-NTVDRV 253 (496)
Q Consensus 186 cAG-pGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl-~r~g~~nv~v~~~D~~~l~~~~--------~~-~~FD~V 253 (496)
|+| ++|.+..+|..+. ....|+.++.+...++...+.+ ...+.. ++..|..+..... .. +.+|.+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE---VIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE---EEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc---eEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 344 5788888887654 3458999999999865444444 445533 4788886532110 12 789999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHH----HHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeC
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQ----KCSYLQKQLILAAIDMVDANSKSGGYIVYSTC 313 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~----~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTC 313 (496)
+.++.-+..... ..| .+..+.+++. ........++..++.++ +++|.+|+.+-
T Consensus 78 V~~a~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gsii~iss 134 (241)
T PF13561_consen 78 VNNAGISPPSNV-EKP--LLDLSEEDWDKTFDINVFSPFLLAQAALPLM----KKGGSIINISS 134 (241)
T ss_dssp EEEEESCTGGGT-SSS--GGGSHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHEEEEEEEEE
T ss_pred EecccccccccC-CCC--hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCcccccc
Confidence 886542221000 011 0111222222 22223344566666655 77888777653
No 461
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.84 E-value=33 Score=35.07 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCce-EEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTN-TIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~n-v~v~~~D~~~l~~~~--------~~ 247 (496)
.|..||=-||.+| .+.++|..+ +.+..++-+-....+++.+.+.+...+..+ +.++..|..+..... ..
T Consensus 11 ~~kvVvITGASsG-IG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSG-IGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 4778888888776 455555544 333467777789999999988888888766 999999998753211 23
Q ss_pred CCCCEEEECCCCCCC
Q 011002 248 NTVDRVLLDAPCSGT 262 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~ 262 (496)
+..|+.+.||--+..
T Consensus 90 g~vDvLVNNAG~~~~ 104 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLV 104 (282)
T ss_pred CCCCEEEecCccccc
Confidence 789999999866553
No 462
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.79 E-value=65 Score=30.79 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=52.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
|.+||=.|| +|+.+.+++..+-.. ..|++++.+...+......+. .+ .++.++..|..+..... ..+.
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 557776665 578888888754433 489999988877776666554 33 34778888887643210 0147
Q ss_pred CCEEEECCCCC
Q 011002 250 VDRVLLDAPCS 260 (496)
Q Consensus 250 FD~VLlDpPCS 260 (496)
+|.|+..+..+
T Consensus 82 id~vi~~ag~~ 92 (252)
T PRK06138 82 LDVLVNNAGFG 92 (252)
T ss_pred CCEEEECCCCC
Confidence 89999866543
No 463
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=76.77 E-value=2.3 Score=40.30 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHH
Q 011002 250 VDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALK 329 (496)
Q Consensus 250 FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~ 329 (496)
.|+|+.|||+...--. ..... ................++..+.++| +|||.+++ .|+.....+ ..+..+++
T Consensus 1 VdliitDPPY~~~~~~-~~~~~--~~~~~~~~~y~~~~~~~~~~~~rvL----k~~g~~~i-~~~~~~~~~-~~~~~~~~ 71 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYFD--YGDNKNHEEYLEWMEEWLKECYRVL----KPGGSIFI-FIDDREIAG-FLFELALE 71 (231)
T ss_dssp EEEEEE---TSSSCS------C--SCHCCHHHHHHHHHHHHHHHHHHHE----EEEEEEEE-EE-CCEECT-HHHHHHHH
T ss_pred CCEEEECCCCCCCCCc-chhhh--ccCCCCHHHHHHHHHHHHHHHHhhc----CCCeeEEE-EecchhhhH-HHHHHHHH
Confidence 4899999998543220 00000 0001123344455667888888887 99998755 445433332 35555555
Q ss_pred hCC-cEEeec
Q 011002 330 KRD-VKLVPC 338 (496)
Q Consensus 330 ~~~-~~lv~~ 338 (496)
..+ +.+...
T Consensus 72 ~~g~~~~~~~ 81 (231)
T PF01555_consen 72 IFGGFFLRNE 81 (231)
T ss_dssp HHTT-EEEEE
T ss_pred Hhhhhheecc
Confidence 545 666553
No 464
>PRK12746 short chain dehydrogenase; Provisional
Probab=76.76 E-value=43 Score=32.26 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEE-eCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc-----------
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYAN-EMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL----------- 245 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~Av-Dis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~----------- 245 (496)
+.+||=.| |+|+.+.+++..+...| .|+.. ..+...+..+...+...+ ..+.++..|..+.....
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 56777666 57889999888664445 45443 455655555544444333 23677788887643210
Q ss_pred ---CCCCCCEEEECC
Q 011002 246 ---GLNTVDRVLLDA 257 (496)
Q Consensus 246 ---~~~~FD~VLlDp 257 (496)
.....|.|+..|
T Consensus 84 ~~~~~~~id~vi~~a 98 (254)
T PRK12746 84 IRVGTSEIDILVNNA 98 (254)
T ss_pred cccCCCCccEEEECC
Confidence 113589999865
No 465
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.71 E-value=6 Score=35.46 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=28.8
Q ss_pred ecccCCc--HHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH--HHHc
Q 011002 184 DMAAAPG--GKTTYIA-ALMKNTGLIYANEMKASRLKSLTAN--LHRM 226 (496)
Q Consensus 184 DlcAGpG--gktl~lA-~l~~~~g~V~AvDis~~rl~~l~~n--l~r~ 226 (496)
|+||.-| ..++++. +.....+.|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666554 2455568999999999999999999 5544
No 466
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.65 E-value=28 Score=34.20 Aligned_cols=79 Identities=6% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCCeEeeccc-CCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CC
Q 011002 178 EKERVIDMAA-APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GL 247 (496)
Q Consensus 178 ~g~~VLDlcA-GpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~ 247 (496)
.|..||=.|+ |++|.+..+|..+... ..|+.++.+....+.+.+.....| ....+..|..+..... ..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD--SELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC--CceEEECCCCCHHHHHHHHHHHHHHh
Confidence 4668888887 5788888888766433 477776655333333333333333 2345677887642110 12
Q ss_pred CCCCEEEECCC
Q 011002 248 NTVDRVLLDAP 258 (496)
Q Consensus 248 ~~FD~VLlDpP 258 (496)
+.+|.++.++-
T Consensus 83 g~iD~lVnnAG 93 (261)
T PRK08690 83 DGLDGLVHSIG 93 (261)
T ss_pred CCCcEEEECCc
Confidence 67999999763
No 467
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=76.65 E-value=13 Score=37.59 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 011002 175 APQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 175 ~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~ 220 (496)
.+++|++||-.|+|. |..++.+|..++. ..|++++.+..+.+.++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Confidence 456899999965432 3344555555431 37888888887776544
No 468
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.42 E-value=50 Score=33.50 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.|+ +||.+.+++..+.. ...|+.++.+...++.+...+...+ .++.++..|..+.... . ..+
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 3567776664 57888888875543 3489999998888776666553222 2467778888764321 0 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.|+.++.
T Consensus 83 ~iD~li~nAg 92 (322)
T PRK07453 83 PLDALVCNAA 92 (322)
T ss_pred CccEEEECCc
Confidence 5899999774
No 469
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=76.31 E-value=18 Score=35.40 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=31.4
Q ss_pred hcCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHH
Q 011002 173 ALAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSLT 220 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~ 220 (496)
...+.+|++||=.|+|+ |..+..+|..++. ..|++++.+++++..++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHH
Confidence 34567899999886544 4444556665542 24999999998876444
No 470
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=76.27 E-value=16 Score=39.89 Aligned_cols=117 Identities=7% Similarity=0.089 Sum_probs=72.0
Q ss_pred CCCC-eEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEEEE
Q 011002 177 QEKE-RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLL 255 (496)
Q Consensus 177 ~~g~-~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLl 255 (496)
.+-. ++|-+|||.--.+.++-.- +--.|+.+|+|+-+++.+...-+ ....-..+...|...+. ++.++||+|+.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~--fedESFdiVId 120 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV--FEDESFDIVID 120 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc--CCCcceeEEEe
Confidence 3445 8999999998776655442 12379999999999887765543 23334677777877664 44588999986
Q ss_pred CCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCC
Q 011002 256 DAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314 (496)
Q Consensus 256 DpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCS 314 (496)
=. +...++...+...|. ..-...+....+++ ++||+.+-.||-
T Consensus 121 kG--tlDal~~de~a~~~~----------~~v~~~~~eVsrvl----~~~gk~~svtl~ 163 (482)
T KOG2352|consen 121 KG--TLDALFEDEDALLNT----------AHVSNMLDEVSRVL----APGGKYISVTLV 163 (482)
T ss_pred cC--ccccccCCchhhhhh----------HHhhHHHhhHHHHh----ccCCEEEEEEee
Confidence 11 011111112222111 11122456666665 999999988884
No 471
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=76.26 E-value=17 Score=38.62 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=59.1
Q ss_pred cCCCCCCeEeecccCCcHHHHH---HHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCC----ccccC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNEL----PKVLG 246 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~---lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l----~~~~~ 246 (496)
..+++|++||=.|+ |+.++. +|..++ ...|++.|.++.+++.++ ++|+. . +.......+ .....
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~----~~Ga~-~-v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGA--GPVGLAAAASAQLLG-AAVVIVGDLNPARLAQAR----SFGCE-T-VDLSKDATLPEQIEQILG 251 (393)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHH----HcCCe-E-EecCCcccHHHHHHHHcC
Confidence 34678999887655 455444 444443 235677899988887765 46774 2 222111111 11112
Q ss_pred CCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCcEEEEEe
Q 011002 247 LNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK-QLILAAIDMVDANSKSGGYIVYST 312 (496)
Q Consensus 247 ~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~-~LL~~A~~~L~~~lkpGG~LVYST 312 (496)
...+|+||- |+|.-... ++ ... ...+. ..+..+++++ ++||++++.-
T Consensus 252 ~~g~Dvvid---~~G~~~~~-~~---~~~--------~~~~~~~~~~~~~~~~----~~~G~i~~~G 299 (393)
T TIGR02819 252 EPEVDCAVD---CVGFEARG-HG---HDG--------KKEAPATVLNSLMEVT----RVGGAIGIPG 299 (393)
T ss_pred CCCCcEEEE---CCCCcccc-cc---ccc--------cccchHHHHHHHHHHh----hCCCEEEEee
Confidence 246898875 55531000 00 000 00011 2477888887 9999998743
No 472
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=76.11 E-value=9.2 Score=39.65 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=57.4
Q ss_pred CCCCCCeEeecccCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEE-EEecCCCCC-ccccCCCCC
Q 011002 175 APQEKERVIDMAAAP--GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI-VCNYDGNEL-PKVLGLNTV 250 (496)
Q Consensus 175 ~~~~g~~VLDlcAGp--Ggktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~-v~~~D~~~l-~~~~~~~~F 250 (496)
..++|++||=.|++. |..+++||..++. .+++.-.+.+..+ .++.+|.+.+. ....|..+- ........+
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 467899999777443 3445555655532 6666666665544 45567776533 222221111 111222369
Q ss_pred CEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCC
Q 011002 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSI 315 (496)
Q Consensus 251 D~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl 315 (496)
|+|+- + . | -..+..++..| +++|++++...+-
T Consensus 213 Dvv~D-~--v--G------------------------~~~~~~~l~~l----~~~G~lv~ig~~~ 244 (326)
T COG0604 213 DVVLD-T--V--G------------------------GDTFAASLAAL----APGGRLVSIGALS 244 (326)
T ss_pred eEEEE-C--C--C------------------------HHHHHHHHHHh----ccCCEEEEEecCC
Confidence 99974 1 1 1 12355566776 8999998876654
No 473
>PLN02702 L-idonate 5-dehydrogenase
Probab=75.96 E-value=20 Score=36.93 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=56.3
Q ss_pred cCCCCCCeEeecccCCcHHH---HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc------
Q 011002 174 LAPQEKERVIDMAAAPGGKT---TYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV------ 244 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgkt---l~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~------ 244 (496)
..+.+|++||=.|+ |+.+ +.+|..++ ...|+++|.++.+.+.+ ..+|++.+.........+...
T Consensus 177 ~~~~~g~~vlI~g~--g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 177 ANIGPETNVLVMGA--GPIGLVTMLAARAFG-APRIVIVDVDDERLSVA----KQLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHH----HHhCCCEEEecCcccccHHHHHHHHhh
Confidence 44678889888854 4444 44555543 23588999988877644 446775443321111111110
Q ss_pred cCCCCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 245 ~~~~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.....+|+||- |+|.+ ..+..++++| +++|+++..
T Consensus 250 ~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 284 (364)
T PLN02702 250 AMGGGIDVSFD---CVGFN-------------------------KTMSTALEAT----RAGGKVCLV 284 (364)
T ss_pred hcCCCCCEEEE---CCCCH-------------------------HHHHHHHHHH----hcCCEEEEE
Confidence 11246898875 44432 1256677776 999998754
No 474
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.72 E-value=59 Score=31.16 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCH-HHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKA-SRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~-~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
+.+||-.|+ +|+.+.+++..+... ..|++++.+. ..++.+...+...+. ++.++..|..+.... + ..+
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 567887774 577888887755433 3788877654 455555555554443 467778888764321 0 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+.++.
T Consensus 84 ~~d~vi~~ag 93 (248)
T PRK07806 84 GLDALVLNAS 93 (248)
T ss_pred CCcEEEECCC
Confidence 6899998764
No 475
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=75.63 E-value=24 Score=37.70 Aligned_cols=117 Identities=12% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHH------------HHc-CCceEEEEecCCCCCccccCCCCCCEE
Q 011002 188 APGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANL------------HRM-GVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 188 GpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl------------~r~-g~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
|.|..++.+|..+... -.|+++|.++.+++.+.... .+. ...++.+. .|.. ... ...|+|
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~---~~~--~~advv 80 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYE---DAI--RDADVI 80 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHH---HHH--hhCCEE
Confidence 3444444455544333 38999999999998776421 110 01112222 1211 112 468999
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~ 330 (496)
++-.|..-.. ...|+. .. +..+++.+.+.+++|-.++. +.|+.|...+.+...++++
T Consensus 81 ii~vpt~~~~--~~~~d~------~~-----------v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 81 IICVPTPLKE--DGSPDL------SY-----------VESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILER 137 (411)
T ss_pred EEEeCCCCCC--CCCcCh------HH-----------HHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence 9866532210 011111 11 11222222222477665554 4588888888888887765
No 476
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=75.45 E-value=49 Score=33.17 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc--------cCCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV--------LGLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~--------~~~~~ 249 (496)
+..||=-||++| ++..+|..+...| .|+...-..++|+.+...+.. ..+.+...|.++.... ...+.
T Consensus 6 ~kv~lITGASSG-iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 6 GKVALITGASSG-IGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CcEEEEecCcch-HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 455666666555 6666776654444 899999999999988887765 3466777787764220 12378
Q ss_pred CCEEEECC
Q 011002 250 VDRVLLDA 257 (496)
Q Consensus 250 FD~VLlDp 257 (496)
+|+++.||
T Consensus 82 iDiLvNNA 89 (246)
T COG4221 82 IDILVNNA 89 (246)
T ss_pred ccEEEecC
Confidence 99999987
No 477
>PLN00198 anthocyanidin reductase; Provisional
Probab=75.35 E-value=34 Score=34.86 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=48.3
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHc-CCceEEEEecCCCCCcc---ccCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRM-GVTNTIVCNYDGNELPK---VLGLN 248 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~-g~~nv~v~~~D~~~l~~---~~~~~ 248 (496)
|.|..+.+||=.| |+|..+.+|+..+-..| .|+++..+......+.. +..+ ...++.++.+|.++... .+ .
T Consensus 4 ~~~~~~~~vlItG-~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~ 79 (338)
T PLN00198 4 LTPTGKKTACVIG-GTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPI--A 79 (338)
T ss_pred ccCCCCCeEEEEC-CchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHH--h
Confidence 3455677888665 45999999988664434 78777666543332221 1111 12357788888876432 22 4
Q ss_pred CCCEEEECC
Q 011002 249 TVDRVLLDA 257 (496)
Q Consensus 249 ~FD~VLlDp 257 (496)
.+|.|+.-+
T Consensus 80 ~~d~vih~A 88 (338)
T PLN00198 80 GCDLVFHVA 88 (338)
T ss_pred cCCEEEEeC
Confidence 689998755
No 478
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.27 E-value=57 Score=31.93 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=51.0
Q ss_pred eEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCCCC
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVD 251 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~FD 251 (496)
+||-.| |+|+.+..++..+... ..|+.++.+...++.+...+...|. ++.++..|..+.... . ..+.+|
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 456455 5777888887655443 4899999999888887777766553 466777888654221 0 114699
Q ss_pred EEEECCC
Q 011002 252 RVLLDAP 258 (496)
Q Consensus 252 ~VLlDpP 258 (496)
.|+.++.
T Consensus 80 ~lI~~ag 86 (270)
T PRK05650 80 VIVNNAG 86 (270)
T ss_pred EEEECCC
Confidence 9998653
No 479
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=75.20 E-value=9.1 Score=42.21 Aligned_cols=45 Identities=31% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHH--HHHHHHhhhhcCCCCcEEE
Q 011002 248 NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL--ILAAIDMVDANSKSGGYIV 309 (496)
Q Consensus 248 ~~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~L--L~~A~~~L~~~lkpGG~LV 309 (496)
.++...+.|.-.|-.| .+.|+++...|.-| +..|+.+| ++||.++
T Consensus 351 ~GVHf~MADGGFSVEG-------------QeNiQEILSKqLyLCQfL~aL~Iv----R~gG~F~ 397 (845)
T KOG3673|consen 351 LGVHFMMADGGFSVEG-------------QENIQEILSKQLYLCQFLVALCIV----REGGNFF 397 (845)
T ss_pred cceEEEEecCCccccc-------------hhhHHHHHHHHHHHHHHHHHheee----ecCCeEE
Confidence 4577777777666655 34555555444433 33566666 9999887
No 480
>PLN02253 xanthoxin dehydrogenase
Probab=74.93 E-value=40 Score=33.20 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=50.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.|.+||=.| |+|+.+.+++..+. ....|+.+|.+....+.+...+.. + .++.++..|..+..... ..+
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 366788777 55778888887554 334899999887766555544421 1 34777888887642210 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.|+.++-
T Consensus 94 ~id~li~~Ag 103 (280)
T PLN02253 94 TLDIMVNNAG 103 (280)
T ss_pred CCCEEEECCC
Confidence 6899998763
No 481
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.73 E-value=16 Score=37.83 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCCCeEeecccCCcHHHH---HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCEE
Q 011002 177 QEKERVIDMAAAPGGKTT---YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRV 253 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl---~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~V 253 (496)
++|++||=.|+ |+.+. ++|..++ ..|++++.++.+...+ ++.+|...+. ...+...+.... ..+|.|
T Consensus 179 ~~g~~vlV~G~--G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~---~~~~Ga~~~i-~~~~~~~~~~~~--~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGL--GGVGHMGVKIAKAMG--HHVTVISSSDKKREEA---LEHLGADDYL-VSSDAAEMQEAA--DSLDYI 248 (357)
T ss_pred CCCCeEEEEcc--cHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHH---HHhcCCcEEe-cCCChHHHHHhc--CCCcEE
Confidence 57899987754 45544 4455443 3688888887665443 3457875322 111211111111 358988
Q ss_pred EECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 254 LLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 254 LlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
+- |+|.+ ..+..+++++ ++||+++..
T Consensus 249 id---~~g~~-------------------------~~~~~~~~~l----~~~G~iv~~ 274 (357)
T PLN02514 249 ID---TVPVF-------------------------HPLEPYLSLL----KLDGKLILM 274 (357)
T ss_pred EE---CCCch-------------------------HHHHHHHHHh----ccCCEEEEE
Confidence 74 44421 1255677776 999998764
No 482
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.72 E-value=44 Score=32.39 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCeEeecccCC-cHHHHHHHHHcCCCc-EEEEEeCC------------HHHHHHHHHHHHHcCCceEEEEecCCCCCccc
Q 011002 179 KERVIDMAAAP-GGKTTYIAALMKNTG-LIYANEMK------------ASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244 (496)
Q Consensus 179 g~~VLDlcAGp-Ggktl~lA~l~~~~g-~V~AvDis------------~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~ 244 (496)
+..||=.|++. |+.+.+++..+...| .|++++.+ ..... +...+...+. ++.++..|..+....
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV-RCEHMEIDLSQPYAP 82 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 56788888775 788888887664334 78888765 22222 4444444443 477788888764321
Q ss_pred c--------CCCCCCEEEECCC
Q 011002 245 L--------GLNTVDRVLLDAP 258 (496)
Q Consensus 245 ~--------~~~~FD~VLlDpP 258 (496)
. ..+.+|.|+..+-
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCC
Confidence 0 1256899988653
No 483
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.61 E-value=11 Score=39.61 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=51.9
Q ss_pred CCCCeEeecccCCcHHHHH---HHHHcCCCcEEEEEeCCHHH-HHHHHHHHHHcCCceEEEEecCCCCCccccCCCCCCE
Q 011002 177 QEKERVIDMAAAPGGKTTY---IAALMKNTGLIYANEMKASR-LKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252 (496)
Q Consensus 177 ~~g~~VLDlcAGpGgktl~---lA~l~~~~g~V~AvDis~~r-l~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~~FD~ 252 (496)
++|++||=.|+ |+.++. +|..++ ..|++++.+.++ .+. ++.+|++.+.- ..+...+.... ..+|+
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~----a~~lGa~~~i~-~~~~~~v~~~~--~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKAFG--LRVTVISRSSEKEREA----IDRLGADSFLV-TTDSQKMKEAV--GTMDF 245 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHHcC--CeEEEEeCChHHhHHH----HHhCCCcEEEc-CcCHHHHHHhh--CCCcE
Confidence 57899988765 555544 444443 368888887554 333 34578754321 11111111111 35888
Q ss_pred EEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 253 VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
|+- |+|.. ..+..+++++ ++||+++..
T Consensus 246 vid---~~G~~-------------------------~~~~~~~~~l----~~~G~iv~v 272 (375)
T PLN02178 246 IID---TVSAE-------------------------HALLPLFSLL----KVSGKLVAL 272 (375)
T ss_pred EEE---CCCcH-------------------------HHHHHHHHhh----cCCCEEEEE
Confidence 874 55431 1256677776 999999865
No 484
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.36 E-value=74 Score=30.72 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=51.3
Q ss_pred CCCeEeecccCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALM-KNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~-~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.|..+|=.|++. |.+..++..+ ..+..|+.++.+...++.+.+.+...|.. +..+..|..+.... + ..+
T Consensus 4 ~~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN-VYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC-eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366788777666 5566666544 34458899999999998888888776643 45555666553211 0 114
Q ss_pred -CCCEEEECC
Q 011002 249 -TVDRVLLDA 257 (496)
Q Consensus 249 -~FD~VLlDp 257 (496)
.+|.++.++
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 799999876
No 485
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=74.33 E-value=13 Score=40.19 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=65.5
Q ss_pred CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-----------HcCCceEEEEecCCCCCccccCCCCCCEEEEC
Q 011002 188 APGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH-----------RMGVTNTIVCNYDGNELPKVLGLNTVDRVLLD 256 (496)
Q Consensus 188 GpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~-----------r~g~~nv~v~~~D~~~l~~~~~~~~FD~VLlD 256 (496)
|.|..++.+|..+...-.|+++|+++.+++.+.+... ..| +..+. .+.. .. ...|+|++=
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~~----~~--~~advvii~ 83 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEIE----KI--KECNFYIIT 83 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCHH----HH--cCCCEEEEE
Confidence 6777888777776654689999999999988872211 111 11121 1111 11 468999884
Q ss_pred CCCCCCCcc-cCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHHHHh
Q 011002 257 APCSGTGVI-SKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKK 330 (496)
Q Consensus 257 pPCSg~Gvi-~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~L~~ 330 (496)
.| +..- ...|++ . -+..+.+.+.+.+++| .+|....|+.|...++++..++.+
T Consensus 84 Vp---tp~~~~~~~dl------~-----------~v~~a~~~i~~~l~~g-~lVI~~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 84 VP---TPINTYKQPDL------T-----------PLIKASETVGTVLNRG-DIVVYESTVYPGCTEEECVPILAR 137 (425)
T ss_pred cC---CCCCCCCCcch------H-----------HHHHHHHHHHHhcCCC-CEEEEecCCCCcchHHHHHHHHHh
Confidence 44 2210 011111 1 1222233333334775 566667789999999998888775
No 486
>PRK07791 short chain dehydrogenase; Provisional
Probab=74.26 E-value=75 Score=31.73 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCH---------HHHHHHHHHHHHcCCceEEEEecCCCCCccc---
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKA---------SRLKSLTANLHRMGVTNTIVCNYDGNELPKV--- 244 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~---------~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~--- 244 (496)
.|.++|-.|++ ||.+..++..+. ....|+.++.+. ..+..+...+...|. ++.++..|..+....
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 46788888865 567777766543 334788888765 566666666655553 356677788763211
Q ss_pred -----cCCCCCCEEEECCC
Q 011002 245 -----LGLNTVDRVLLDAP 258 (496)
Q Consensus 245 -----~~~~~FD~VLlDpP 258 (496)
...+.+|.++.++-
T Consensus 83 ~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHhcCCCCEEEECCC
Confidence 01267899998763
No 487
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.23 E-value=23 Score=35.63 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=56.4
Q ss_pred hcCCCCCCeEeecccCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCc--cccCCC
Q 011002 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTG--LIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELP--KVLGLN 248 (496)
Q Consensus 173 ~L~~~~g~~VLDlcAGpGgktl~lA~l~~~~g--~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~--~~~~~~ 248 (496)
...+++|++||..|+ |+.+..++++....| .|++++.++.+...+. ++|+. .++..+...+. ......
T Consensus 154 ~~~~~~g~~vlI~g~--g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 154 LLGIKPGDSVLVFGA--GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK----KLGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCCe--EEecCCCCCHHHHHHhcCC
Confidence 345678999999964 555444444433333 3888999988876653 35654 23333222111 011225
Q ss_pred CCCEEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEE
Q 011002 249 TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310 (496)
Q Consensus 249 ~FD~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVY 310 (496)
.+|.|+. |++.+ ..+..+++.+ +++|+++.
T Consensus 226 ~vd~v~~---~~~~~-------------------------~~~~~~~~~l----~~~G~~v~ 255 (334)
T cd08234 226 GFDVVIE---ATGVP-------------------------KTLEQAIEYA----RRGGTVLV 255 (334)
T ss_pred CCcEEEE---CCCCh-------------------------HHHHHHHHHH----hcCCEEEE
Confidence 6999985 44322 1355666776 89998754
No 488
>PRK06101 short chain dehydrogenase; Provisional
Probab=74.19 E-value=39 Score=32.54 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=44.9
Q ss_pred eEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---cC--CCCCCEEE
Q 011002 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---LG--LNTVDRVL 254 (496)
Q Consensus 181 ~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~~--~~~FD~VL 254 (496)
.|| +..|+|+.+.+++..+... ..|++++.++.+++.+... + .++.++..|..+.... .. ....|.++
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i 76 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHPGTKAALSQLPFIPELWI 76 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence 345 3445788999888766543 4899999998877655432 1 3466777888764311 00 12357887
Q ss_pred ECCC
Q 011002 255 LDAP 258 (496)
Q Consensus 255 lDpP 258 (496)
.++.
T Consensus 77 ~~ag 80 (240)
T PRK06101 77 FNAG 80 (240)
T ss_pred EcCc
Confidence 7664
No 489
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=74.12 E-value=6 Score=39.94 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=36.6
Q ss_pred CCCCCCeEeecccC------CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccccCCC
Q 011002 175 APQEKERVIDMAAA------PGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN 248 (496)
Q Consensus 175 ~~~~g~~VLDlcAG------pGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~~~~ 248 (496)
.+..+++||-+||| || |..|-+.++.+..|+-+|+..-.- +.-..+.+|-+.+.. ..
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPG--t~VLrqwlP~~ailvDnDi~d~vS------------Da~~~~~~Dc~t~~~---~~ 120 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPG--TAVLRQWLPEDAILVDNDIRDYVS------------DADQSIVGDCRTYMP---PD 120 (299)
T ss_dssp ---TT-EEEEES---TTSB-HH--HHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEE---SS
T ss_pred eeccCcEEEEecccccCCcCCc--hHHHHHhCCCCcEEEecchhhhcc------------ccCCceeccccccCC---CC
Confidence 34568999999987 45 456778887778999999975211 112345577766643 36
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
+||.|+.|.=
T Consensus 121 k~DlIiSDmY 130 (299)
T PF06460_consen 121 KFDLIISDMY 130 (299)
T ss_dssp -EEEEEE---
T ss_pred cccEEEEecc
Confidence 8999999963
No 490
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.05 E-value=57 Score=31.12 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLNT 249 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~~ 249 (496)
+.+||=.|+ .|+.+.+++..+... ..|++++.+...+..+.+. ++. ++.++..|..+..... ..+.
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LGE-SALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hCC-ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 556665554 577888887765433 4889999887766554433 343 3566677776542110 1146
Q ss_pred CCEEEECCCC
Q 011002 250 VDRVLLDAPC 259 (496)
Q Consensus 250 FD~VLlDpPC 259 (496)
+|.|+..+..
T Consensus 81 id~vi~~ag~ 90 (249)
T PRK06500 81 LDAVFINAGV 90 (249)
T ss_pred CCEEEECCCC
Confidence 8999987653
No 491
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=74.05 E-value=22 Score=36.54 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=45.8
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc---ccCCCCCCEEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK---VLGLNTVDRVL 254 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~---~~~~~~FD~VL 254 (496)
|.+||-.| |+|+.+.+++..+-.. ..|++++.+..........+. .+ .++.++.+|.++... .+....+|.|+
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 56787666 6788888888766433 479999877654332222221 11 246667788876432 12122579988
Q ss_pred ECCC
Q 011002 255 LDAP 258 (496)
Q Consensus 255 lDpP 258 (496)
.-+.
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7554
No 492
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=73.55 E-value=45 Score=33.94 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=49.7
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNT--GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~--g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
+.+||=.| |+||.+..++..+... ..|+.++.+...++.+...+...+ .++.++..|..+..... ..+
T Consensus 3 ~k~vlITG-as~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITG-ASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK-DSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45677666 4567788877755433 478888888887776665554222 24667778887642210 125
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.++.++.
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 7899999774
No 493
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.52 E-value=12 Score=37.99 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=56.1
Q ss_pred cCCCCCCeEeecccCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcc-ccCCCCCC
Q 011002 174 LAPQEKERVIDMAAAPGGKTTYIAALMKNT-GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPK-VLGLNTVD 251 (496)
Q Consensus 174 L~~~~g~~VLDlcAGpGgktl~lA~l~~~~-g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~-~~~~~~FD 251 (496)
+.+.+|++||=.|+ |..+..+.++.... ..|++++.+..+++.+. .+|++.+ ++..-..+.. ......+|
T Consensus 159 ~~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~----~~g~~~~--i~~~~~~~~~~~~~~~~~d 230 (333)
T cd08296 159 SGAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGSDKADLAR----KLGAHHY--IDTSKEDVAEALQELGGAK 230 (333)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH----HcCCcEE--ecCCCccHHHHHHhcCCCC
Confidence 45678899988874 55554443333322 37899999988877663 4676432 2222111211 01113589
Q ss_pred EEEECCCCCCCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEE
Q 011002 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311 (496)
Q Consensus 252 ~VLlDpPCSg~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYS 311 (496)
.|+- |+|.+ ..+..+++.+ +++|++|..
T Consensus 231 ~vi~---~~g~~-------------------------~~~~~~~~~l----~~~G~~v~~ 258 (333)
T cd08296 231 LILA---TAPNA-------------------------KAISALVGGL----APRGKLLIL 258 (333)
T ss_pred EEEE---CCCch-------------------------HHHHHHHHHc----ccCCEEEEE
Confidence 8873 44332 1356677776 899988753
No 494
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.49 E-value=60 Score=31.72 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=48.7
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+.+||=.| |+|+.+..++..+.. ...|+.+|.+...++.+...+ + ..+.++..|..+.... + ..+
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356777666 456788877776543 348999999887665554433 3 2467778888764211 0 124
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.++.++.
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 495
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.19 E-value=97 Score=30.36 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=52.2
Q ss_pred CCCeEeecccCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCcccc--------CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMK-NTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVL--------GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~-~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~~--------~~~ 248 (496)
.+.+||=.|++ |+.+..++..+. ....|+.++.+...++.+...+...|. ++.++..|..+..... ..+
T Consensus 9 ~~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35667766654 667777777553 334899999998888777777665543 4677788887642110 125
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
.+|.|+..+.
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 7899998653
No 496
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=73.12 E-value=32 Score=33.27 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=44.8
Q ss_pred EeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCCCCCE
Q 011002 182 VIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLNTVDR 252 (496)
Q Consensus 182 VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~~FD~ 252 (496)
||=. .|+|+.+.+++..+.. +..|++++.++..+..+...+ + .++.++..|..+.... + ..+..|.
T Consensus 3 vlIt-Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 3 VLVT-GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G-DNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred EEEE-CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c-cceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4434 3567788888876543 348999999988776665443 3 2466777888664211 0 1146899
Q ss_pred EEECC
Q 011002 253 VLLDA 257 (496)
Q Consensus 253 VLlDp 257 (496)
|+..+
T Consensus 78 vi~~a 82 (248)
T PRK10538 78 LVNNA 82 (248)
T ss_pred EEECC
Confidence 98754
No 497
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=73.07 E-value=29 Score=33.86 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=48.0
Q ss_pred CCCeEeecccCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc---c-----CCC
Q 011002 178 EKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV---L-----GLN 248 (496)
Q Consensus 178 ~g~~VLDlcAGpGgktl~lA~l~~~-~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~---~-----~~~ 248 (496)
.+..||=.|+ +|+.+.+++..+.. +..|+.++.+...++.+... .+ .++.++..|..+.... + ..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~---~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA---HG-DAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh---cC-CceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 3567776765 57788888875543 34899999988777665432 23 2466677787653211 1 114
Q ss_pred CCCEEEECCC
Q 011002 249 TVDRVLLDAP 258 (496)
Q Consensus 249 ~FD~VLlDpP 258 (496)
..|.++.++-
T Consensus 79 ~id~li~~Ag 88 (262)
T TIGR03325 79 KIDCLIPNAG 88 (262)
T ss_pred CCCEEEECCC
Confidence 6899988763
No 498
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=73.05 E-value=31 Score=34.93 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=30.3
Q ss_pred cCCCCCCeEeecccCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Q 011002 174 LAPQEKERVIDMAAAP-GGKTTYIAALMKNTGLIYANEMKASRLKSL 219 (496)
Q Consensus 174 L~~~~g~~VLDlcAGp-Ggktl~lA~l~~~~g~V~AvDis~~rl~~l 219 (496)
..+.+|.+||-.++|. |..++++|..++ ..|+++..++.+.+.+
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFA 199 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHH
Confidence 4567899999986542 445555666653 5788888888877665
No 499
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.05 E-value=5.5 Score=43.41 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=79.2
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHcCCceEEEEecCCCCCccc-----cCCCCCCEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV-----LGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g~V~AvDis~~rl~~l~~nl~r~g~~nv~v~~~D~~~l~~~-----~~~~~FD~V 253 (496)
+..+|=+|=|.|+....+-..++ ...|+|++++|.++..+.++.....-....+...|+..+... .....||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 55677788888998887766654 378999999999999999988766544344555676554211 123579999
Q ss_pred EECCCCC-CCCcccCCchhhccCCHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcEEEEEeCCCCCcCCHHHHHHH
Q 011002 254 LLDAPCS-GTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYA 327 (496)
Q Consensus 254 LlDpPCS-g~Gvi~r~p~i~~~~s~~~i~~l~~lQ~~LL~~A~~~L~~~lkpGG~LVYSTCSl~~eENE~vV~~~ 327 (496)
++|.--+ ..|.-..-|+ -+ -..+|..+-.. |.|-|.++.---+-...-+.++...+
T Consensus 375 ~~dvds~d~~g~~~pp~~--------fv------a~~~l~~~k~~----l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPA--------FV------AQVALQPVKMI----LPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred EEECCCCCcccCcCCchH--------HH------HHHHHHHHhhc----cCccceEEEEEecCCcchhHHHHHhh
Confidence 9996322 1222111111 01 12234444444 49999886554444445566665544
No 500
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=72.65 E-value=50 Score=33.10 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCeEeecccCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHcCC-ceEEEEecCCCCCcc---ccCCCCCCEE
Q 011002 179 KERVIDMAAAPGGKTTYIAALMKNTG-LIYANEMKASRLKSLTANLHRMGV-TNTIVCNYDGNELPK---VLGLNTVDRV 253 (496)
Q Consensus 179 g~~VLDlcAGpGgktl~lA~l~~~~g-~V~AvDis~~rl~~l~~nl~r~g~-~nv~v~~~D~~~l~~---~~~~~~FD~V 253 (496)
|.+||=.| |+|..+.+++..+...| .|++++.+..............+. .++.++.+|..+... .+ ..+|.|
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~V 80 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV--DGCEGV 80 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH--cCCCEE
Confidence 56777555 47999999887665444 788877665433222221111122 357888888876432 22 468999
Q ss_pred EECCCCC
Q 011002 254 LLDAPCS 260 (496)
Q Consensus 254 LlDpPCS 260 (496)
+.-+...
T Consensus 81 ih~A~~~ 87 (322)
T PLN02662 81 FHTASPF 87 (322)
T ss_pred EEeCCcc
Confidence 9877543
Done!