RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011002
(496 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 493 bits (1271), Expect = e-175
Identities = 117/323 (36%), Positives = 179/323 (55%), Gaps = 10/323 (3%)
Query: 61 VQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD 120
+ LD GY++ +++ + + E+ EKP P C R NTLK +DL
Sbjct: 3 LSPSMLDKLLRLGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPRCFRVNTLKISVQDLVK 61
Query: 121 VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKE 180
L +G W+K G + I +TPE++ G +Q ASS P +AL P+ E
Sbjct: 62 RLNKKGFQFKR-VPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGE 120
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNE 240
V DMAAAPGGKT+Y+A LM+N G+IYA ++ +RL+ NL R+GV N I+ +
Sbjct: 121 IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180
Query: 241 LPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDA 300
+ ++ D++LLDAPC+G+G I K+ K +++++DI+ C LQ +L+ ++++
Sbjct: 181 IGELNV--EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVL-- 236
Query: 301 NSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLE 360
K GG +VYSTCS+ ENE VI +AL DV+L+P L +G ++
Sbjct: 237 --KPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPFGIELSEEIK 292
Query: 361 KTRRFYPHVHNMDGFFVAKLKKM 383
RR YP VH GFF+AK++K+
Sbjct: 293 NARRLYPDVHETSGFFIAKIRKL 315
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 452 bits (1164), Expect = e-156
Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 21/329 (6%)
Query: 70 SYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 129
+ Y + FL M + + + + ++P +R NTLK D + G L
Sbjct: 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 64
Query: 130 DPLSKWSKVGLVVY---DSQVPIGATPEYMAGFYMLQSASSFLPVMALA--PQEKERVID 184
P W + G + + +P+G+T E+++G + +Q ASS LPV AL +RV+D
Sbjct: 65 TP-IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMD 123
Query: 185 MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKV 244
+AAAPG KTT I+A M N G I ANE ASR+K L AN+ R G++N + ++DG
Sbjct: 124 VAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA 183
Query: 245 LGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKS 304
+ D +LLDAPCSG GV+ KD + S E Q+ + Q++LI +A + +
Sbjct: 184 VP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RP 238
Query: 305 GGYIVYSTCSIMVTENEAVIDYALKKRD--VKLVPCGLDFGRQGFVRFREHRFHPSLEKT 362
GG +VYSTC++ ENEAV + + V+ +P G F + E
Sbjct: 239 GGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP--------GANKALTEEGF 290
Query: 363 RRFYPHVHNMDGFFVAKLKKMSNSKKTSA 391
+P +++ +GFFVA+L+K A
Sbjct: 291 LHVFPQIYDCEGFFVARLRKTQAIPALPA 319
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 442 bits (1140), Expect = e-153
Identities = 101/333 (30%), Positives = 151/333 (45%), Gaps = 17/333 (5%)
Query: 76 EFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
+ + + E+ E +++ E R LR NTLK + L P
Sbjct: 4 KAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRP-IP 58
Query: 135 WSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTT 194
W + G + P G P + AG Y +Q S+ + L P+ ERV+D+AAAPGGKTT
Sbjct: 59 WCQEGFYYPEEARP-GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 195 YIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVL 254
++AA M GL+ ANE+ R++ L N+ R G V L + G RVL
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPL-AVTQAPPRALAEAFG-TYFHRVL 175
Query: 255 LDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCS 314
LDAPCSG G+ KD ++ + +QK L+ A ++ GG +VYSTC+
Sbjct: 176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLL----GPGGVLVYSTCT 231
Query: 315 IMVTENEAVIDYALKKR-DVKLVPCGL-DFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
ENE V+ + LK + +L L G + E +P L KT R +PH
Sbjct: 232 FAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGE--GNPELLKTARLWPHRLEG 289
Query: 373 DGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPE 405
+G F+A+ +K + T +PS ++
Sbjct: 290 EGHFLARFRKEGGAWSTPRLERPSPLSQEALRA 322
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 435 bits (1120), Expect = e-150
Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 16/318 (5%)
Query: 74 YNEFLIGALVEMFPPVELMELIESF-EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPL 132
+ I + E + + + R N LK D+ + + P
Sbjct: 8 LPQQFIKKYRLLLGE-EASDFFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP- 65
Query: 133 SKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGK 192
+S G + G + + AG+ Q S+ + A A + E+V+D+ AAPGGK
Sbjct: 66 --YSNEGFLG----TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGK 119
Query: 193 TTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDR 252
+T +AA MK GL+ NE+ R K L+ N+ R GV+N IV N+ EL DR
Sbjct: 120 STQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS-GFFDR 178
Query: 253 VLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST 312
+++DAPCSG G+ KD + + E C Q++++ +AI M+ K+ G ++YST
Sbjct: 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML----KNKGQLIYST 234
Query: 313 CSIMVTENEAVIDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNM 372
C+ ENE +I + ++ V + L E LEKT R +PH
Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSG--RSEWGSVAGLEKTIRIWPHKDQG 292
Query: 373 DGFFVAKLKKMSNSKKTS 390
+G FVAKL ++
Sbjct: 293 EGHFVAKLTFHGQNQMHK 310
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 420 bits (1081), Expect = e-147
Identities = 117/294 (39%), Positives = 169/294 (57%), Gaps = 24/294 (8%)
Query: 94 LIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATP 153
++ ++ + +R NTLK L L N+GV L+ + V S IG+TP
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTP 58
Query: 154 EYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKA 213
EY+ G+YM QS SS +P + L P+E + ++DM AAPGGKTT++A LMKN G I A E+
Sbjct: 59 EYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISK 118
Query: 214 SRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTV--DRVLLDAPCSGTGVISKDESV 271
+R K+L +N++RMGV NTI+ N D + L N + D++LLDAPCSG + K+
Sbjct: 119 TRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNR-- 176
Query: 272 KTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKR 331
+ S EDI+ CS QK+LI ID++ K G +VYSTCS+ V ENE VI Y L+KR
Sbjct: 177 --NVSEEDIKYCSLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKR 230
Query: 332 -DVKLVPCGLDFGRQGFVRFREHRFHPS-LEKTRRFYPHVHNMDGFFVAKLKKM 383
DV+L+ + F+ ++ T R +P + FF+AKL+K+
Sbjct: 231 NDVELIIIKAN-------EFKGINIKEGYIKGTLRVFPP---NEPFFIAKLRKI 274
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 395 bits (1017), Expect = e-136
Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 32/314 (10%)
Query: 99 EKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKV----------------GLVV 142
P +R NTLKT D+ D +G + + L+V
Sbjct: 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66
Query: 143 YDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKN 202
+ +Q + P Y AG +LQ +S LP M L P VID AAPG KT+++AAL+KN
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 203 TGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGL-NTVDRVLLDAPCSG 261
G I+A ++ A RL S+ L R GV+ + D + + V +LLD CSG
Sbjct: 127 QGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSG 186
Query: 262 TGVISKDESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTE 319
+G+ S+ + + + + Q++ + A+ S +VYSTCS+ E
Sbjct: 187 SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTF-----PSLQRLVYSTCSLCQEE 241
Query: 320 NEAVIDYALKKR--DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFV 377
NE V+ AL++ +L P + +G F P E R P GFFV
Sbjct: 242 NEDVVRDALQQNPGAFRLAPALPAWPHRGLSTF------PGAEHCLRASPETTLSSGFFV 295
Query: 378 AKLKKMSNSKKTSA 391
A ++++ ++
Sbjct: 296 AVIERVEVPRRARG 309
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 269 bits (689), Expect = 3e-85
Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 19/312 (6%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y +LI + + ++ I +R NTLK ++ L GV +
Sbjct: 155 YLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR 214
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
S+ L + + + G ++Q +S + + L P+ E V+D+AAAPGG
Sbjct: 215 -SERVPTILKI-KGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGG 272
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT++A LMKN G IYA ++ R+K L + RMG+ D + P+++G D
Sbjct: 273 KTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD 332
Query: 252 RVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYS 311
+VLLDAPC+ +G I K+ ++ + I + S LQ++L+ +A +V K GG ++Y+
Sbjct: 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLV----KPGGRLLYT 388
Query: 312 TCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVH 370
TCSI ENE I + L + KLVP + LE T R +PH H
Sbjct: 389 TCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPG------------FLEGTMRAWPHRH 436
Query: 371 NMDGFFVAKLKK 382
+ GFF A L+K
Sbjct: 437 STIGFFYALLEK 448
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 247 bits (633), Expect = 3e-77
Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 31/314 (9%)
Query: 72 YGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 131
Y + +L+ L + +P + ++E+ + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 132 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVIDMAAAPGG 191
+ + ++ P+ A P + G+ +Q AS+ + LAPQ E ++D+ AAPGG
Sbjct: 202 -HADYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 192 KTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVD 251
KTT+I + + A ++ RL + NL R+G+ T+ DG + G D
Sbjct: 260 KTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 252 RVLLDAPCSGTGVISK--DESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIV 309
R+LLDAPCS TGVI + D +K + DI + + LQ +++ A + K+GG +V
Sbjct: 318 RILLDAPCSATGVIRRHPD--IKWLRRDRDIPELAQLQSEILDAIWPHL----KTGGTLV 371
Query: 310 YSTCSIMVTENEAVIDYALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPH 368
Y+TCS++ EN I L++ D +L G + ++ P
Sbjct: 372 YATCSVLPEENSLQIKAFLQRTADAELCETGTP-----------------EQPGKQNLPG 414
Query: 369 VHNMDGFFVAKLKK 382
DGFF AKL K
Sbjct: 415 AEEGDGFFYAKLIK 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 2e-09
Identities = 63/497 (12%), Positives = 140/497 (28%), Gaps = 159/497 (31%)
Query: 3 LNIREESDEFR-LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSR-KEY 60
+ ++ D + + +KEEI+ + R+ F L K +++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRL---------FWTLLSKQEEMVQKF 82
Query: 61 VQQ-LKLDLGSYYGYNEFLIGAL-VEMFPPVELMELIESFEKPRPICLRTNTLKTR---- 114
V++ L+++ Y FL+ + E P + + + + R N + +
Sbjct: 83 VEEVLRIN----YK---FLMSPIKTEQRQPSMMTRM---YIEQRDRLYNDNQVFAKYNVS 132
Query: 115 RRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMAL 174
R L + L P +++ G + G
Sbjct: 133 RLQPYLKLRQALLELRPAK-----NVLID------G-----VLGS--------------- 161
Query: 175 APQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVC 234
GKT + + + + + + + N C
Sbjct: 162 ----------------GKTWVALDVCLSYKVQCKMDF----------KIFWLNLKN---C 192
Query: 235 NYDGNELPKVLGLNT-VDRVLLDAPCSGTGVISKDESVKTSKS----LEDIQKCSYLQKQ 289
N L + L +D + + + S++ + + C L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--- 247
Query: 290 LIL------AAIDMVDANSKSGGYIVYSTCSIMV-TENEAVIDY--ALKKRDVKLVPCGL 340
L+L A + + + C I++ T + V D+ A + L +
Sbjct: 248 LVLLNVQNAKAWNAFNLS-----------CKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 341 DF----GRQGFVRFREHRFH--PSLEKTRRFYPHVHNMDGFFVAKLK---------KMSN 385
+ +++ + R P T P ++ ++ K N
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSI---IAESIRDGLATWDNWKHVN 351
Query: 386 SKKTSAGPQPS----ETVEQQT--------PES-NVSNG------DKKTEENSEQVL--M 424
K + + S E E + P S ++ + + V+ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 425 KKATTKAKDLKKKTSGL 441
K + K K+ T +
Sbjct: 412 HKYSLVEKQPKESTISI 428
Score = 49.1 bits (116), Expect = 3e-06
Identities = 73/510 (14%), Positives = 148/510 (29%), Gaps = 157/510 (30%)
Query: 18 EEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLK-----LDLGSY- 71
I+ E++QP + I++ R+ ++ + ++ SR + +L+ L
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 72 --YGYNEFLIGA----LV----------EMFP-------------PVELMELIESF---- 98
G ++G+ + P ++E+++
Sbjct: 154 LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 99 --------EKPRPICLRTNTLKTRRRDL-------ADVLINRGVN----LDPLSKWSKVG 139
+ I LR ++++ R L +L+ V + + K+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI- 268
Query: 140 LV------VYDSQVPIGATPEYM----AGFYMLQSASSFLPVMALAPQE--KE------R 181
L+ V D T + + S L + PQ+ +E R
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 182 VIDMAAAPGGKTTYIAALMKN-----TGLIYANEMKASR-----LKSLTANLHRMGVTNT 231
+ + IA +++ + N K + L L +R
Sbjct: 329 RLSI----------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 232 IVCNYDGNELP-KVLGL-------NTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQ-- 281
V + +P +L L + V V+ ++ K +++ S+ I
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQ-PKESTISIPSIYLE 434
Query: 282 ---KCS---YLQKQLI--LAAIDMVDANSKSG----GYIVYSTCSIMVTENEAVIDYALK 329
K L + ++ D++ Y YS I + LK
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSH-----------IGHHLK 482
Query: 330 KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKK- 388
+ + R F+ F RF LE+ R N G + L+++ K
Sbjct: 483 NIEHPER---MTLFRMVFLDF---RF---LEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 389 -TSAGPQPSETVEQ-----QTPESNVSNGD 412
P+ V E N+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSK 563
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 48.2 bits (115), Expect = 7e-07
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 35/164 (21%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
ALAP+ E + D+ G E+ R + + +N +GV++ I
Sbjct: 20 ALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI 78
Query: 233 VCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLIL 292
+ + D + + + GV
Sbjct: 79 AVQQGAPRAFDDV-PDNPDVIFIGGGLTAPGV---------------------------- 109
Query: 293 AAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKLV 336
GG +V + ++ E+E ++ K+ +
Sbjct: 110 --FAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTIS 148
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+E V+D+ G Y++ ++ G +YA +++ + ++++G+ N
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 233 VCNYDGNELPKVLGLNTVDRVLL 255
V + N++P L NTVD + +
Sbjct: 92 VLKSEENKIP--LPDNTVDFIFM 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-04
Identities = 80/531 (15%), Positives = 146/531 (27%), Gaps = 205/531 (38%)
Query: 2 QLNIREESDEFR--LPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
QL ++F LP E +P L + + L L + +
Sbjct: 32 QLQ-----EQFNKILPEPTEGFAADDEPTTPAEL------VGKFLGYVSSLVEPSKV-GQ 79
Query: 60 YVQQLKLDLGSYYGYNEFLIG----ALVEMFPPVELMELIESFEKPRPICLRTNTLKTRR 115
+ Q L L L + N +L G AL E + +K
Sbjct: 80 FDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQ----------ENDTTLVKTKELIKNYI 127
Query: 116 RDLADVLINRGVNLDPLSKWSKVGLV--VYDSQVPI-------GATPEY---MAGFY--- 160
A ++ R P K S L V + + G T +Y + Y
Sbjct: 128 T--ARIMAKR-----PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 161 ------MLQSASSFLPVMALAPQEKERV----IDM-------AAAPGGKTTYIAALMKNT 203
+++ ++ L + + E+V +++ + P Y+ ++ +
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--KDYLLSIPISC 238
Query: 204 GLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTG 263
LI + H + + K+LG + L TG
Sbjct: 239 PLI-----------GVIQLAHYV-----VTA--------KLLGFTPGE--LRSYLKGATG 272
Query: 264 VISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAV 323
S+ ++ A+ A + S E+
Sbjct: 273 H-SQG----------------------LVTAV--AIAETDSW---------------ESF 292
Query: 324 IDYALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 383
K + ++ F F+ R + +P+ P + +
Sbjct: 293 FVSVRKA--ITVL-----F----FIGVRCYEAYPNTS----LPPSI-------------L 324
Query: 384 SNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAE 443
+S + + G PS P ++SN + EQV + K S L
Sbjct: 325 EDSLENNEG-VPS-------PMLSISNLTQ------EQVQ--------DYVNKTNSHLPA 362
Query: 444 NGNVE-----SPSN-------------EKRRKKRKFPSREEISKVREEKRK 476
VE N +K K PS + S++ +RK
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Score = 35.4 bits (81), Expect = 0.053
Identities = 45/283 (15%), Positives = 89/283 (31%), Gaps = 95/283 (33%)
Query: 77 FLIGALV-EMFP-----PVELMELIESFEK-PRPICLRTNTLKTRRRDLADV--LINRGV 127
F IG E +P P L + +E+ E P P+ L V +N+
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNK-T 356
Query: 128 NLD-PLSKWSKVGLVVYDSQVPIGATPEYMAGFYML-----------QS----------- 164
N P K ++ LV + + P+ + G + QS
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 165 ASSFLPVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLH 224
++ FLPV A+P + + L+ A+++ L + +
Sbjct: 417 SNRFLPV---------------ASP-----FHSHLLVP-----ASDLINKDLVKNNVSFN 451
Query: 225 ----RMGVTNTI----VCNYDGNELPKVLGLNTVDRV----LLDAPCS-----GTGVISK 267
++ V +T + G+ +++ V + G G S
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 268 DESVKTSKSLED--IQKCSYLQKQLILAAIDMVDANSKSG-GY 307
+ T ++ + + ++I+A +D N G+
Sbjct: 512 LGVL-THRNKDGTGV--------RVIVAG--TLDINPDDDYGF 543
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 37.6 bits (87), Expect = 0.004
Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
+ + +E + V+D G T ++A+L+ G ++ +++ + + T L + + +
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74
Query: 231 TIVCNYDGNELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290
+ DG++ V V+ + S + +++ + K
Sbjct: 75 RVTLIKDGHQNMDKYIDCPVKAVMFN--LGYLPSGDHSISTRPETTIQALSK-------- 124
Query: 291 ILAAIDMVDANSKSGGYI---VYSTCSIMVTENEAVIDYA 327
+ + +GG I +Y E E V+++
Sbjct: 125 AMELL-------VTGGIITVVIYYGGDTGFEEKEKVLEFL 157
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 35.7 bits (83), Expect = 0.016
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHRMGVTNT 231
L + + V+D+ GG + + K +YA + ++ NL + + N
Sbjct: 30 KLNLNKDDVVVDVGCGSGG----MTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNC 85
Query: 232 IV 233
+
Sbjct: 86 QI 87
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 35.6 bits (82), Expect = 0.018
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN-- 230
ALAP+ E + D+ G + G E +A R++++ N+ G++
Sbjct: 50 ALAPRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRM 106
Query: 231 TIVCNYDGNELPKVL-GLNTVDRVLLDA 257
V P L L + V +
Sbjct: 107 RAVQ----GTAPAALADLPLPEAVFIGG 130
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.078
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 6 REESDEFRLPTKEEIEEEKQQ------PPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKE 59
REE + RL + + +Q DL +R E V K+ + K
Sbjct: 91 REEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE-----KNKINNRIADKA 144
Query: 60 YVQQLKLDL 68
+ QQ D+
Sbjct: 145 FYQQPDADI 153
Score = 30.1 bits (67), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 465 EEISKVREEKRKTLREK-VSSKKA 487
E I K REE+RK L+E +SK
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVM 108
Score = 28.2 bits (62), Expect = 4.4
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 35/97 (36%)
Query: 408 VSNGDKKTEENSEQVLMKK-ATTKAKDLKKKTSGLAENGNVESPSNEKRRKKRKFPSREE 466
++ D+ T+E E ++K + K L++ + + +E
Sbjct: 74 IAQADRLTQE-PES--IRKWREEQRKRLQEL--------------DAASKVME-----QE 111
Query: 467 ISKVREEKRKTL-------REKVSSKKAGSKDKGNEK 496
RE+ +K L E+V K ++ +K
Sbjct: 112 W---REKAKKDLEEWNQRQSEQVEKNKI--NNRIADK 143
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.12
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 44/167 (26%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIA-ALMKNTGLIYANEMKASRLKSLTANLHRMGVTN- 230
P + + +D+ G + L +YA + + + NL R G+ +
Sbjct: 28 LAEPGKNDVAVDVGCGTG----GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDN 83
Query: 231 -TIVCNYDGNELPKVL-GLNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQK 288
T++ + P+ L + +D + G+G L++I
Sbjct: 84 VTLME----GDAPEALCKIPDIDIAV----VGGSG-----------GELQEI-------- 116
Query: 289 QLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDYALKKRDVKL 335
+ ++ K GG I+ + + E + L+ +
Sbjct: 117 ------LRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFDV 154
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 33.0 bits (76), Expect = 0.21
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENE--AVIDYAL 328
+ K + + K Y +LI ++++ G I+ ST + +T ++ I+
Sbjct: 297 ARNKKEVFSVSK-DY--HKLIRQGLEIL----SENGLIIASTNAANMTVSQFKKQIEKGF 349
Query: 329 KKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
K+ LD + + + E +
Sbjct: 350 GKQKHTY----LDLQQLPS----DFAVNVQDESSN 376
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 32.2 bits (74), Expect = 0.23
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G + +A + I +++ S L + +GV N + DG++L
Sbjct: 53 GAFVSGMAKQNPDINYI-GIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGE 111
Query: 250 VDRVLL 255
+DR+ L
Sbjct: 112 IDRLYL 117
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.8 bits (72), Expect = 0.54
Identities = 14/98 (14%), Positives = 30/98 (30%)
Query: 399 VEQQTPESNVSNGDKKTEENSEQVLMKKATTKAKDLKKKTSGLAENGNVESPSNEKRRKK 458
VE+ + NGD ++ E K +KK + E +++
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 459 RKFPSREEISKVREEKRKTLREKVSSKKAGSKDKGNEK 496
+R+ E+K + ++ +K
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKK 101
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 31.1 bits (71), Expect = 0.54
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 190 GGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLNT 249
G + +A + I E+ S + + + N + N D + L V
Sbjct: 50 GQFISGMAKQNPDINYI-GIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGE 108
Query: 250 VDRVLL 255
V RV L
Sbjct: 109 VKRVYL 114
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 31.5 bits (72), Expect = 0.58
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN---EAVIDYA 327
VK + L +++ L+ A+ ++ G++ S+CS + E A
Sbjct: 292 VKRPEELPAMKR-HL--VDLVREALRLL----AEEGFLWLSSCSYHLRLEDLLEVARRAA 344
Query: 328 LK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
R +++ Q +H + + ++
Sbjct: 345 ADLGRRLRV----HRVTYQPE----DHPWSLHIPESL 373
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 31.1 bits (71), Expect = 0.80
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
G+ + +S +P+ P + G L A+ V+A+ E+V+ + + P
Sbjct: 236 CGCGIEISESALPV--KPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAALHSHP 293
Query: 190 GGK 192
GK
Sbjct: 294 LGK 296
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 0.88
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 381 KKMSNSKKTSAGPQPSETVEQQTPESNVSNGD-------KKTEENSEQVLMKKATTKAKD 433
+K++ ++ ++P + + KK E EQV K K +
Sbjct: 293 RKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQK 352
Query: 434 LKKKTSGLAE-----NGNVESPSNEKRRKKRKFPSREEISKVREEKRKTLREKVSSKKAG 488
LK + L N+E+ E K+R+F +E + ++R ++ S
Sbjct: 353 LKDSEAELQRRHEQMKKNLEAQHKELEEKRRQF--EDEKANWEAQQRILEQQNSSRTLEK 410
Query: 489 SKDKGN 494
+K KG
Sbjct: 411 NKKKGK 416
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.0
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 379 KLKKMSNSKKTSAGPQ--PS----ETVE 400
LKK+ S K A P+ T+E
Sbjct: 21 ALKKLQASLKLYA-DDSAPALAIKATME 47
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 30.3 bits (69), Expect = 1.0
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 30/143 (20%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNT-GLIYA---NEMKASR---------LKSLTANLHRMG 227
++D+ PG I KN I M K N+ +
Sbjct: 25 IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNIN 84
Query: 228 VTNTIVCNYDGNELPKVLGLNTVDRVLLD-APCSGTGVISKDESVKTSKSLEDIQKCSYL 286
+ + N +L ++L +D +L D A G D
Sbjct: 85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDD---------------HLN 128
Query: 287 QKQLILAAIDMVDANSKSGGYIV 309
+L L+ ++ GG +
Sbjct: 129 SCELTLSITHFMEQYINIGGTYI 151
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 30.5 bits (69), Expect = 1.1
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKN-TGLIYANEMKASRLKSLTANLHRMGVTNT 231
+ + RV+D+ A G + ++ G+ EM ++ ++ GV N
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM----VEVASSFAQEKGVENV 71
Query: 232 IVCNYDGNELP 242
LP
Sbjct: 72 RFQQGTAESLP 82
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 29.7 bits (68), Expect = 1.4
Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)
Query: 181 RVIDMAAAPGGKTTYIAALMKNTGLIYA---NEMKASRLKSLTANLHRMGVTNTIVCNYD 237
V+D+ AAPGG + Y+ + G I A M GV + D
Sbjct: 25 TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIV-----------GVD-FLQG--D 70
Query: 238 ------GNELPKVLGLNTVDRVLLD-APCSGTGVISKDESVKTSKSLEDIQKCSYLQKQL 290
L + +G + V V+ D AP + +G + D L
Sbjct: 71 FRDELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVD---------------IPRAMYL 114
Query: 291 ILAAIDMVDANSKSGGYIV 309
+ A++M GG V
Sbjct: 115 VELALEMCRDVLAPGGSFV 133
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 30.0 bits (68), Expect = 1.7
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 271 VKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTEN---EAVIDYA 327
V+ L + Y K + + AI ++ GG ++ +CS ++T + + + D A
Sbjct: 305 VENKSQLMGACR-GY--KDINMLAIQLL----NEGGILLTFSCSGLMTSDLFQKIIADAA 357
Query: 328 LK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
+ RDV+ ++ RQ +H + +
Sbjct: 358 IDAGRDVQF----IEQFRQAA----DHPVIATYPEGL 386
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 29.5 bits (67), Expect = 2.3
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 136 SKVGLVVYDSQVPIGATPEYMAGFYM---LQSASSFLPVMALAPQEKERVID-MAAAPGG 191
S VG++V ++ +PI + A+ VM +A + E ++ M G
Sbjct: 238 SNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKG 297
Query: 192 K 192
+
Sbjct: 298 R 298
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 29.4 bits (66), Expect = 2.6
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 21/90 (23%)
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D V+LD P V+ K L+ + +Y + A +++V K GG +V
Sbjct: 291 DIVVLDPP----------AFVQHEKDLKAGLR-AY--FNVNFAGLNLV----KDGGILVT 333
Query: 311 STCSIMVTEN---EAVIDYALK-KRDVKLV 336
+CS V + +I K + +K++
Sbjct: 334 CSCSQHVDLQMFKDMIIAAGAKAGKFLKML 363
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 29.3 bits (66), Expect = 3.0
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 29/117 (24%)
Query: 251 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVY 310
D V+LD P K K +E + +Y K++ L AI ++ K GG +
Sbjct: 281 DLVVLDPP----------AFAKGKKDVERAYR-AY--KEVNLRAIKLL----KEGGILAT 323
Query: 311 STCSIMVTEN---EAVIDYALK-KRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTR 363
++CS +TE V + A R +++ ++ Q F +H + +T
Sbjct: 324 ASCSHHMTEPLFYAMVAEAAQDAHRLLRV----VEKRGQPF----DHPVLLNHPETH 372
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 29.1 bits (66), Expect = 3.5
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
S VG+ +Y+ ++P+ G L A+ V+ + E+ ++ M +
Sbjct: 216 SGVGIKIYEEKLPV--KESVKSACEFMGIDFLHLANEGKVVVVVERDYAEKALEIMKSHE 273
Query: 190 GGK 192
GK
Sbjct: 274 YGK 276
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 28.4 bits (64), Expect = 5.2
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 136 SKVGLVVYDSQVPIGATPEY-----MAGFYMLQSASSFLPVMALAPQEKERVID-MAAAP 189
S+ V ++ VP+ G L A+ + L + E + + P
Sbjct: 237 SQAVCHVLETAVPV--RESVRNGCSFLGLDPLYLANEGKLICILPEERAEAALAVLREGP 294
Query: 190 GGK 192
G+
Sbjct: 295 HGE 297
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.3 bits (63), Expect = 5.2
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 173 ALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTI 232
+V++ G +T +A I + ++ L+ N + G+ N
Sbjct: 32 DTVYPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIKNVK 90
Query: 233 VCNYDGNELPKVLGLNTVDRV 253
+ LP ++ D +
Sbjct: 91 FLQANIFSLP--FEDSSFDHI 109
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 28.3 bits (64), Expect = 5.6
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 57 RKEYVQ---QLKLDLGSYYGYNEFLIG--------ALVEMFPPVELMELI 95
RKE+V L+ + F G L +F P E+ LI
Sbjct: 193 RKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLI 242
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 28.2 bits (62), Expect = 6.0
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 171 VMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTN 230
+ ER + + P T + + + + E++ + + +GV
Sbjct: 115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGVDG 173
Query: 231 TIVCNYDGNELPKVLGLNTVDRVLLDA 257
V D + D +++ A
Sbjct: 174 VNVITGDETVID----GLEFDVLMVAA 196
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 6.4
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 27/117 (23%)
Query: 19 EIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTSRKEYVQQLKLDLGSYYGYNEFL 78
E ++ + + ++ ++R++S +LS K+++ +
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIRIVSGL-ELSDTKQKGKKFL----------------V 165
Query: 79 IGALVEMFPPVELMELIESFEKP-RPICLRTNTLKTRRRDLADVLINRGVNLDPLSK 134
I E F E I + E P I N D D L + D +SK
Sbjct: 166 IAY--EPF------ENI-AIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 28.3 bits (63), Expect = 7.3
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 170 PVMALAPQEKERVIDMAAAPGGKTTYIAALMKNTGLIYANEM 211
P+M+ E V D+AA P A L+ NTG + EM
Sbjct: 290 PIMSEIQSE---VNDLAAIPH------ATLLLNTGSVAPPEM 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.361
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,261,984
Number of extensions: 444600
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 58
Length of query: 496
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 399
Effective length of database: 3,993,456
Effective search space: 1593388944
Effective search space used: 1593388944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)