BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011003
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
KVGEE EIG Q WDTPE GDEVEVHYTGTLLDG +FDSSRDR FKF
Sbjct: 17 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77 LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E FEFKTDEE
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
SWD
Sbjct: 375 SWD 377
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
KVGEE EIG Q WDTPE GDEVEVHYTGTLLDG +FDSSRDR FKF
Sbjct: 1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61 LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E FEFKTDEE
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 19/312 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D V V+Y +L +G + + F++ G V TMKKGE
Sbjct: 45 ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
L KP+Y +G A+G+ +P NATL +EL+ +K ++ +D +I++ + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
+ PNEGA V++ L G+ G VF + + F E+ I G+D+A+ M++
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
E +L + P Y FG E+ + + PN+ + YEV L SFEK KESW+M+T
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
+G FK GKY +A +Y K V ++E + ++E K +++ +A LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTK 473
++Y +A + C K
Sbjct: 331 REYTKAVECCDK 342
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 134/263 (50%), Gaps = 28/263 (10%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD V VHY G L +G +FDSS DR+ PF F++G+G VIK WDIG+ TMKKGE
Sbjct: 45 ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
PE AYG +GS P IP NATL F+VELL + + NP
Sbjct: 105 LLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEGYSNPN 163
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
+ V ++ E R G V V FTV +G H P + KA++ M++ E+ +L + P
Sbjct: 164 EGARVQIHLEGRC--GGRVFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGP 221
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPN 287
+YGFGE GK G + PNA L + L S++ E E D E+
Sbjct: 222 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKESW-----------EMDTKEKLE 266
Query: 288 EGAVVKVKLIGKLQDGTVFVKKG 310
+ A+VK K GTV+ K G
Sbjct: 267 QAAIVKEK-------GTVYFKGG 282
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVV 292
E K++ GN P AT+ E V+ K D+ V+K + + G G E P G V
Sbjct: 5 EGAKNSRGN-----PAATVAEQGEDVTSKK------DRGVLKIVKRVGHGEETPMIGDRV 53
Query: 293 KVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352
V GKL +G F H E F F + QVI D V TMKK E+ L PEY
Sbjct: 54 YVHYNGKLANGKKF-DSSHDRNEP-FVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEY 111
Query: 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
A+G+ S L +P N+T+ +EVEL+ F+ E
Sbjct: 112 AYGATGS---LPKIPSNATLFFEVELLDFKGE 140
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 165/312 (52%), Gaps = 19/312 (6%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMK+GE
Sbjct: 45 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
L KP+Y +G ++G+ +P NATL +EL+ +K ++ +D +I++ ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
+ PNEGA V++ L G+ G +F + + F E+ I G+D+A+ M++
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
E +L + P Y FG E+ + + PN+ + YEV L SFEK KESW+M+T
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
+G FK GKY +A +Y K V ++E + ++E K +++ +A LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTK 473
++Y +A + C K
Sbjct: 331 REYTKAVECCDK 342
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 134/263 (50%), Gaps = 28/263 (10%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE
Sbjct: 45 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
PE AYG +GS P IP NATL F++ELL + + NP
Sbjct: 105 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 163
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
+ V ++ E R M V FTV +G H P + KA++ M++ E+ +L + P
Sbjct: 164 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 221
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPN 287
+YGFGE GK G + PNA L + L S++ E E D E+
Sbjct: 222 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKESW-----------EMDTKEKLE 266
Query: 288 EGAVVKVKLIGKLQDGTVFVKKG 310
+ A+VK K GTV+ K G
Sbjct: 267 QAAIVKEK-------GTVYFKGG 282
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMK+ E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 88 KAWDIGVATMKRGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 140
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 13/229 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
S + +D +I++I G+G+ +PNEGA+V+V L G +D +++ F+
Sbjct: 19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
E + +D GL+RA+ M+K E +++ + P YAFGS +E +PPN+ + YE+ L S
Sbjct: 71 EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
FEK KESW+MN+ +G FK GKY +A +Y+K V ++EY++SF +EE
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
++A+AL++A +LN A C LKL+ + A + C K E G+ G
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 237
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 50 WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK---GWDIGIKTMKKG 106
+ P G VEV G D FD +F +G+G + G + I+ M+KG
Sbjct: 38 YAKPNEGAIVEVALEGYYKDKL-FDQ-----RELRFEIGEGENLDLPYGLERAIQRMEKG 91
Query: 107 ENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
E+++ + P A+G G IPPNA L++++ L S+
Sbjct: 92 EHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
L +A++ M+KGE ++ +KP Y FG GK + +PPNA L+ L L S++ E
Sbjct: 81 LERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 134
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
PE AYG +GS P IP NATL F++ELL + + NP
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
+ V ++ E R M V FTV +G H P + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
+YGFGE GK G + PNA L + L S++ E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
L KP+Y +G ++G+ +P NATL +EL+ +K ++ +D +I++ ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
+ PNEGA V++ L G+ G +F + + F E+ I G+D+A+ M++
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
E +L + P Y FG E+ + + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMKK E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 13/229 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
S + +D +I++I G+G+ +PNEGA+V+V L G +D +++ F+
Sbjct: 19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
E + +D GL+RA+ +K E +++ + P YAFGS +E +PPN+ + YE+ L S
Sbjct: 71 EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
FEK KESW+ N+ +G FK GKY +A +Y+K V ++EY++SF +EE
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489
++A+AL++A +LN A C LKL+ + A + C K E G+ G
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 50 WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK---GWDIGIKTMKKG 106
+ P G VEV G D FD +F +G+G + G + I+ +KG
Sbjct: 38 YAKPNEGAIVEVALEGYYKDKL-FDQ-----RELRFEIGEGENLDLPYGLERAIQRXEKG 91
Query: 107 ENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
E+++ + P A+G G IPPNA L++++ L S+
Sbjct: 92 EHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 129
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
L +A++ +KGE ++ +KP Y FG GK + +PPNA L+ L L S++ E
Sbjct: 81 LERAIQRXEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKESW 136
Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKG 310
E + E+ + +VK + GTV+ K+G
Sbjct: 137 -----------EXNSEEKLEQSTIVK-------ERGTVYFKEG 161
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ P GD V VHYTG LLDGT+FDSS DR F F LG+G VIK WDI I TMK GE
Sbjct: 65 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXX-XXXXXXXXXXXXWENP 169
T PE AYG +GSPP IPPNATL F+VEL + + P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
+ V V E +D + + + F + +G L +A++ M+KGE ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
P Y FG GK +PPNA L+ L L S++ E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D V V+Y L DG + + D F + G A+ TMK GE
Sbjct: 65 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
+ KP+Y +G ++G+ +PPNATL +EL +K ++T+ D +I++I G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
+G+ +PNEGA+V+V L G +D +++ F+ E + +D GL+RA+
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
M+K E +++ + P YAFGS +E +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K I +EG G E P G V V G L DGT F + + F F + +VI
Sbjct: 50 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D A+ TMK EV +T PEYA+GSA S + +PPN+T+ +EVEL F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G +V VHY G DG QFDSSR R PF+FTLG G VIKGWD G+ TM GE A+FT
Sbjct: 40 PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
KK+L GDG +P G V V G+ DG F + F+F +VI G D+
Sbjct: 28 KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
V TM E AL TI + A+G + V+PP +T+ +EVEL++
Sbjct: 86 GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 168 NPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223
P+ +V V+Y+ R DG + +FT+ G + V TM GEK L
Sbjct: 39 KPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF 98
Query: 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
+ Q +GE+G +PP ATL +EL++
Sbjct: 99 TIPYQLAYGERGYPP-----VIPPKATLVFEVELLA 129
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P G V+VHY GTL +GT+FDSSRDR F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30 PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
I + YG++GSPP IP ATL F+VEL W++
Sbjct: 90 IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D V+K I KEG G +P G VKV +G L++GT F + F F VI
Sbjct: 13 DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
G D V TM K EVA TI +Y +G A S + +P +T+ +EVEL + E S
Sbjct: 71 KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
D +
Sbjct: 128 DRD 130
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 175 VLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y LE+G + D F + G+ V TM KGE ++ YG
Sbjct: 36 VKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYG 95
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDK 270
+G+ G +P ATL +EL W + +I+ D+
Sbjct: 96 YGDAGSPPK-----IPGGATLIFEVELFEW-SAEDISPDR 129
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD V VHYTG LLDGT+FDSS DR F F LG+G VIK WDI + TMK GE
Sbjct: 44 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
T PE AYG +GSPP IPPNATL F+VEL +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K I +EG G E P G V V G L DGT F + + F F + +VI
Sbjct: 29 DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D AV TMK E+ +T PEYA+GSA S + +PPN+T+ +EVEL F+ E
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D V V+Y L DG + + D F + G AV TMK GE
Sbjct: 44 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDK 270
+ KP+Y +G ++G+ +PPNATL +EL +K ++TDD+
Sbjct: 104 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTDDE 145
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ P GD V VHYTG LLDGT+FDSS DR F F LG+G VIK WDI I TMK GE
Sbjct: 45 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
T PE AYG +GSPP IPPNATL F+VEL +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K I +EG G E P G V V G L DGT F + + F F + +VI
Sbjct: 30 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D A+ TMK EV +T PEYA+GSA S + +PPN+T+ +EVEL F+ E
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D V V+Y L DG + + D F + G A+ TMK GE
Sbjct: 45 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+ KP+Y +G ++G+ +PPNATL +EL +K
Sbjct: 105 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFK 138
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ P GD V VHYTG LLDGT+FDSS DR F F LG+G VIK WDI I TMK GE
Sbjct: 49 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
T PE AYG +GSPP IPPNATL F+VEL +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K I +EG G E P G V V G L DGT F + + F F + +VI
Sbjct: 34 DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D A+ TMK EV +T PEYA+GSA S + +PPN+T+ +EVEL F+ E
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D V V+Y L DG + + D F + G A+ TMK GE
Sbjct: 49 EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+ KP+Y +G ++G+ +PPNATL +EL +K
Sbjct: 109 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFK 142
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMKK E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
L KP+Y +G ++G+ +P NATL +EL+ +K
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFK 142
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE
Sbjct: 33 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
PE AYG +GS P IP NATL F++ELL +
Sbjct: 93 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMKK E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMKKGE
Sbjct: 33 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
L KP+Y +G ++G+ +P NATL +EL+ +K
Sbjct: 93 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFK 126
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMKK E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMKKGE
Sbjct: 49 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
L KP+Y +G ++G+ +P NATL +EL+ +K
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFK 142
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+TP GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE
Sbjct: 33 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
PE AYG +GS P IP NATL F++ELL +
Sbjct: 93 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
D+ V+K + + G+G E P G V V GKL +G F H E F F + QVI
Sbjct: 18 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
D V TMKK E+ L PEYA+GSA S L +P N+T+ +E+EL+ F+ E
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
E P D+V V+Y+ +L +G + + F++ G V TMKKGE
Sbjct: 33 ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
L KP+Y +G ++G+ +P NATL +EL+ +K
Sbjct: 93 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFK 126
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPPNATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPNATLIFDVELL 104
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PPN+T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PPNATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPNATLIFDVELL 104
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTGTL DG FDSSR R PF+FT+G+G VI+GWD G+ M G+ A
Sbjct: 17 PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
P+ AYG G P IPPNATL FDVELL
Sbjct: 77 CSPDYAYGSRGHPGVIPPNATLTFDVELL 105
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L GD P G V V G L DG VF + F F +VI G D V
Sbjct: 8 LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A L +P+YA+G S+ V+PPN+T+ ++VEL+ E
Sbjct: 66 QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y L DG V + FTV G + V M G++ L
Sbjct: 17 PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
P Y +G +G + G +PPNATL +EL+
Sbjct: 77 CSPDYAYGSRG-----HPGVIPPNATLTFDVELL 105
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G TIPP
Sbjct: 26 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 86 QLGYGARGAGGVIPPNATLVFEVELL 111
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 15 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 72 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + GH + V+ MK G L + PQ G
Sbjct: 29 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQLG 88
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 89 YGARGAG-----GVIPPNATLVFEVELL 111
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 18 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 78 ISPDYAYGATGHPGIIPPHATLVFDVELL 106
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 9 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 66
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 67 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 18 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 78 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 106
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G ++ V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYG---ARGAAGVIPPNATLVFEVELL 207
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + G + V+ MK G L + PQ G
Sbjct: 125 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G + G +PPNATL +EL+
Sbjct: 185 YGARGAA-----GVIPPNATLVFEVELL 207
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + FEF VI G D V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFEFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D EF + G + V+ MK G L + PQ G
Sbjct: 125 VSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 185 YGARGAG-----GVIPPNATLVFEVELL 207
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ GD V +HYTGTL +G +FDSS DR +PF+ +G G VIKGWD+GI + GE A T
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
IP AYG G P IPPN+TL FDVELL
Sbjct: 82 IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
SE+ + I +I GDG P G +V + G L++G F + F+
Sbjct: 1 SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKF--DSSVDRGSPFQCNIG 57
Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
QVI G D + + E A LTI YA+G + ++PPNST+ ++VEL+
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK D V ++Y LE+G V + + + G + + GEK L
Sbjct: 22 PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ Y +G +G G +PPN+TL +EL+
Sbjct: 82 IPGPYAYGPRGF-----PGLIPPNSTLVFDVELL 110
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + G + V+ MK G L + PQ G
Sbjct: 125 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 185 YGARGAG-----GVIPPNATLVFEVELL 207
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + G + V+ MK G L + PQ G
Sbjct: 125 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 185 YGARGAG-----GVIPPNATLVFEVELL 207
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 46 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 35 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 92 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + G + V+ MK G L + PQ G
Sbjct: 49 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 108
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 109 YGARGAG-----GVIPPNATLVFEVELL 131
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 30 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 90 QLGYGARGAGGVIPPNATLVFEVELL 115
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
+++ +T + + + L EG G E G V V G L DG F + F F
Sbjct: 4 SMTVVTTESGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
VI G D V MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 61 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG + D F + G + V+ MK G L + PQ G
Sbjct: 33 VSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 92
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 93 YGARGAG-----GVIPPNATLVFEVELL 115
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+GW G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + A+ V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG + DSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
+ GDG P G V G L+DG KK S ++ F+F +++VI G +
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
V M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 63 VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRD++ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGVPGIIPPHATLVFDVELL 104
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F ++ + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVG----KADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG K +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGVPGIIPPHATLVFDVELL 104
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG + DSSRDR+ PFKF LG+ VI+GW+ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ--LFEFKTDEEQVIDGLDRA 334
+ GDG P G V G L+DG KK S ++ F+F +++VI G +
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
V M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 63 VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG V + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ-LFEFKTDEEQVIDGLDRAV 335
L EG G E G V V G L DG F G S++ F F VI G D V
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF---GSSKDRNDPFAFVLGGGMVIKGWDEGV 166
Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ +G+ + V+PPN+T+ +EVEL+
Sbjct: 167 QGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 175 VLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
V V+Y L DG G + D F + G + V+ MK G L + PQ G
Sbjct: 125 VSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLG 184
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELV 258
+G +G G +PPNATL +EL+
Sbjct: 185 YGARGAG-----GVIPPNATLVFEVELL 207
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+G++ G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI G + V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L DG +FDSSRDR+ PFKF LG+ VI+G + G+ M G+ A T
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
I P+ AYG +G P IPP+ATL FDVELL
Sbjct: 76 ISPDYAYGATGHPGIIPPHATLVFDVELL 104
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P G V G L+DG F + + F+F +++VI GL+ V
Sbjct: 7 ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LTI+P+YA+G+ ++PP++T+ ++VEL+ E
Sbjct: 65 QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
PK +V+Y LEDG + +F + L + V M G++ L
Sbjct: 16 PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ P Y +G A+G+ G +PP+ATL +EL+
Sbjct: 76 ISPDYAYG-----ATGHPGIIPPHATLVFDVELL 104
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
GD + +HYTG L DGT+FDSS ++ PF F+LG G VIKGWD G+ M +GE IP
Sbjct: 9 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
EL YGE G+PP IP ATL F+VELL
Sbjct: 69 ELGYGERGAPPKIPGGATLVFEVELL 94
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
+G V+ + GKL+DGT F + Q F F QVI G D+ ++ M + E L
Sbjct: 7 RKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL 64
Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
I E +G + + +P +T+ +EVEL+ E+ E
Sbjct: 65 VIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 173 DEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
D + ++Y +LEDG + + F++ G + + M +GEK L + +
Sbjct: 10 DVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69
Query: 229 YGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
G+GE+G +P ATL +EL+ + +E+
Sbjct: 70 LGYGERGAPPK-----IPGGATLVFEVELLKIERRTEL 102
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ G VHYTG L +G +FDSSRDR+ PFKF +G+ VIKG++ G M G+ A T
Sbjct: 16 PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
P++AYG +G P IPPNATL FDVELL+
Sbjct: 76 CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
+ GDG P +G V G LQ+G F + + F+F+ +++VI G +
Sbjct: 7 ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
M + A LT P+ A+G+ V+PPN+T+ ++VEL++ E
Sbjct: 65 QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
M G++ L P +G A+G+ G +PPNATL +EL++
Sbjct: 66 MSLGQRAKLTCTPDVAYG-----ATGHPGVIPPNATLIFDVELLNL 106
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
G V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G TIPP
Sbjct: 26 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
+L YG G+ IPPNATL F+VELL
Sbjct: 86 QLGYGAGGAGGVIPPNATLVFEVELL 111
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
L EG G E G V V G L DG F + F F VI G D V
Sbjct: 15 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
MK V LTI P+ + V+PPN+T+ +EVEL+
Sbjct: 72 GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51 DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
+ P+ G+EV VHY G L G FDSSR+R+ PFKF LGQG VIKGWDI + +M K E
Sbjct: 31 NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
+ + YGE G +IP N+ L F++EL+S+
Sbjct: 91 SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
+T+D V+K IL++G+G E P +G V V +GKL+ G VF E F+F
Sbjct: 11 LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
+ +VI G D V +M KNE + + +Y +G + +P NS + +E+EL+SF
Sbjct: 69 GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 169 PKDLDEVLVNYEARLEDGMVVGKADG-----VEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223
PK +EV V+Y +LE V + +F + G V +M K EK +
Sbjct: 33 PKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSV 92
Query: 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+ +YG+GE+G S +P N+ L +EL+S++
Sbjct: 93 RLDSKYGYGEEGCGES-----IPGNSVLIFEIELISFR 125
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51 DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
+ P+ G+EV VHY G L G FDSS DR+ PFKF L QG VIKGWDI + +M+K E
Sbjct: 32 NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
+ I YG+ G +IP N+ L F++ELLS+
Sbjct: 92 LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
E+T D VIK ILK+GD E P +G V V +GKL+ G VF + F+F
Sbjct: 11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
++ +VI G D V +M+KNE L+ I Y +G + +P NS + +E+EL+SF
Sbjct: 69 LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 169 PKDLDEVLVNYEARLED-GMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223
PK +EV V+Y +LE G V + +F ++ G V +M+K EK L+
Sbjct: 34 PKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLV 93
Query: 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
++ YG+G++G S +P N+ L +EL+S++
Sbjct: 94 RIESMYGYGDEGCGES-----IPGNSVLLFEIELLSFR 126
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51 DTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
+ P+ G+EV VHY G L G FDSS DR+ PFKF L QG VIKGWDI + +M+K E
Sbjct: 32 NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
+ I YG+ G +IP N+ L F++ELLS+
Sbjct: 92 LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
E+T D VIK ILK+GD E P +G V V +GKL+ G VF + F+F
Sbjct: 11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
++ +VI G D V +M+KNE L+ I Y +G + +P NS + +E+EL+SF
Sbjct: 69 LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 169 PKDLDEVLVNYEARLED-GMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223
PK +EV V+Y +LE G V + +F ++ G V +M+K EK L+
Sbjct: 34 PKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLV 93
Query: 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
++ YG+G++G S +P N+ L +EL+S++
Sbjct: 94 RIESMYGYGDEGCGES-----IPGNSVLLFEIELLSFR 126
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
P+ GD V YTGTL DGT FD++ + + P F +G G VI+GWD + TM K
Sbjct: 17 PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
GE A I PE AYG+ G P IPPNA L F+VEL+
Sbjct: 77 GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
K K +LK+GD P +G VV G LQDGTVF + + FK
Sbjct: 2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
+VI G D A++TM K E A L I PE+A+G + Q A +PPN+ + +EVELV +
Sbjct: 62 KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 169 PKDLDEVLVNYEARLEDGMVVG-----------KADGVEFTVKDGHFCPTLAKAVKTMKK 217
PK D V Y L+DG V A + F V G +A+ TM K
Sbjct: 17 PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
GEK L ++P++ +G+KG+ + +PPNA L +ELV
Sbjct: 77 GEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELV 113
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ P++ D V V+Y GTL+DG +FD+S R P F L VI GW G+K +KKG
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
IPPELAYG++G P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
++ ++++ G G E P + V V G L DG F ++ E L F+ D VI G
Sbjct: 123 LVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEF-DNSYTRGEPL-SFRLD--GVIPGW 177
Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
+ +KK L I PE A+G A + +PPNST+ ++VEL+
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAG----VPGIPPNSTLVFDVELL 221
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
E PKD D V+VNY+ L DG + G + + P + +K +KKG K+ L
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 193
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+ P+ +G+ G +PPN+TL +EL+ K
Sbjct: 194 IPPELAYGKAGVP------GIPPNSTLVFDVELLDVK 224
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ P++ D V V+Y GTL+DG +FD+S R P F L VI GW G+K +KKG
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
IPPELAYG++G P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
++ ++++ G G E P + V V G L DG F ++ E L F+ D VI G
Sbjct: 123 LVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEF-DNSYTRGEPL-SFRLD--GVIPGW 177
Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
+ +KK L I PE A+G A + +PPNST+ ++VEL+
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAG----VPGIPPNSTLVFDVELL 221
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
E PKD D V+VNY+ L DG + G + + P + +K +KKG K+ L
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 193
Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+ P+ +G+ G +PPN+TL +EL+ K
Sbjct: 194 IPPELAYGKAGVP------GIPPNSTLVFDVELLDVK 224
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
P D+ EVHYTG L DGT FDSSR+R P F + VIKGW ++ M++G+
Sbjct: 52 APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRL 109
Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
IP +LAYG +G IPP + L+FDVEL+S
Sbjct: 110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
V ++I + G G P +V G+L+DGTVF E + F+ +E VI G
Sbjct: 40 VFQRIAR-GSGKRAPAIDDKCEVHYTGRLRDGTVF--DSSRERGKPTTFRPNE--VIKGW 94
Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
A+ M++ + L I + A+G ++PP S + ++VEL+S
Sbjct: 95 TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI 141
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 173 DEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
D+ V+Y RL DG V + G T + +A++ M++G++ L +
Sbjct: 57 DKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLA 116
Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVSWK 261
+G +G G +PP + L+ +EL+S K
Sbjct: 117 YG-----VTGGGGMIPPYSPLEFDVELISIK 142
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
P+ GD V YTGTL DGT FD++ S+ P F +G G VI+GWD + TM K
Sbjct: 20 PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELL 141
GE A I PE AYG+ G P IPPN L F+VEL+
Sbjct: 80 GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
K K ILK+GD P +G VV G L DGTVF + + FK
Sbjct: 5 KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
+VI G D A++TM K E A L I PE+A+G + Q A +PPN+ + +EVELV +
Sbjct: 65 KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 169 PKDLDEVLVNYEARLEDGMVVG-----------KADGVEFTVKDGHFCPTLAKAVKTMKK 217
PK D V Y L DG V A + F V G +A+ TM K
Sbjct: 20 PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
GEK L ++P++ +G+KG+ + +PPN L +ELV
Sbjct: 80 GEKARLEIEPEWAYGKKGQP----DAKIPPNTKLIFEVELV 116
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 19/241 (7%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
S EG VPP + +E+ D+K V K+I+KEG G +P++ + +
Sbjct: 28 SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
++ + E++ + E++ + GL V +MK E AL+ + E A+G
Sbjct: 75 RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTXXXXXXXXXXXXQGNTLFKAG 413
E VPP + + YEVE++ F++ KE DM GN+LFK
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV--ACNLNNAACKLKLKDYKQAEKLC 471
K A ++YE A+ Y+ D F K Q AL V C+LN AAC +KLK Y +A C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 T 472
Sbjct: 254 N 254
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 61 VHYTG-TLLDGTQFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
+HY T +F+ + P + LG + + G IG+ +MK GE A+ + ELA
Sbjct: 72 LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131
Query: 119 YGESG--SPPTIPPNATLQFDVELLSW 143
YG+ G S P +PP A L ++VE++ +
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGF 158
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
LA V +MK GE+ L+ V + +G++G + N VPP A L +E++ + E
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPN---VPPMADLLYEVEVIGFDETKE 163
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 56 GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMKKGENA 109
G ++ HY G L +G FDSS +R P F +G G VIKGWD GI M G
Sbjct: 30 GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 110 VFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
IPPELAYG+ G+ IPP + L FD+E +
Sbjct: 90 TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 209 AKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
+ + M G K L + P+ +G++G G +PP + L +E +
Sbjct: 77 SDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59 VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
V V Y+G L + FDS+ R TP LG+ + G ++G+ +M++GE A F P
Sbjct: 47 VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
AYG G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
+I+ D+ V+K +++EG G P+ A V VK G L+ D F K
Sbjct: 21 DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
K E+ + G++ +++M++ E+A P YA+G+ ++PPN+TV +E+E
Sbjct: 74 --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
L+ F
Sbjct: 129 LLDF 132
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
+M++GE KP Y +G G +PPN T+ +EL+ +
Sbjct: 91 SMRRGELARFLFKPNYAYGTLGCPP-----LIPPNTTVLFEIELLDF 132
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54 ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
+ GD + VHY G L DG+ F S+ + P FTLG +KGWD G+K M GE
Sbjct: 30 KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
IPP L YG+ G IPP +TL F+++LL
Sbjct: 90 LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 173 DEVLVNYEARLE-DGMVV------GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225
D +LV+YE LE DG + + FT+ + +K M GEK L +
Sbjct: 33 DLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
Query: 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
P G+G++GK G +PP +TL ++L+
Sbjct: 93 PPALGYGKEGK------GKIPPESTLIFNIDLL 119
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P D V V YTG L+DGT FDS+ P F + Q VI GW ++ M G
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
+P LAYG I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
K++ G+G +P + V V+ G+L DGTVF + + F+ QVI G A
Sbjct: 111 KVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV----SQVIPGWTEA 165
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
+ M + + A+G + PN T+ +++ L+S +K
Sbjct: 166 LQLMPAGSTWEIYVPSGLAYGPRSVGGPIG---PNETLIFKIHLISVKK 211
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P D V V YTG L+DGT FDS+ P F + Q VI GW ++ M G
Sbjct: 45 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
+P LAYG I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
K++ G+G +P + V V+ G+L DGTVF + + F+ QVI G A
Sbjct: 35 KVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV----SQVIPGWTEA 89
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
+ M + + A+G + PN T+ +++ L+S +K
Sbjct: 90 LQLMPAGSTWEIYVPSGLAYGPRSVGGPIG---PNETLIFKIHLISVKKS 136
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P+ VEV Y G L DG FD S + P F L +VI GW ++ M G
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
IP + AYG G+ I P L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
V E+ D ++ L G G +P+ V+V+ +G+L DG +F S + Q F
Sbjct: 112 VKELAD--GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIF---DQSTQPQWFRL-- 163
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
+ VI G A+ M L I + A+G AE +L + P + + +E+EL++
Sbjct: 164 --DSVISGWTSALQNMPTGAKWRLVIPSDQAYG-AEGAGDL--IDPFTPLVFEIELIAVS 218
Query: 383 K 383
+
Sbjct: 219 Q 219
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P G V VH +L +GT+ + FTLG +VI+ D+ + M GE A+ T
Sbjct: 28 PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
+ YG G P IPP+A L +V L
Sbjct: 84 ADSKYCYGPQGRSPYIPPHAALCLEVTL 111
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
KK L G G RP +G VV V L L++GT +EE F + VI LD
Sbjct: 15 KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
+V M E A++T +Y +G Q +PP++ + EV L
Sbjct: 69 LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEK 234
V V+ + LE+G V + + FT+ D L +V M GE ++ +Y +G +
Sbjct: 34 VTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQ 93
Query: 235 GKSASGNEGAVPPNATLQIALEL 257
G+S +PP+A L + + L
Sbjct: 94 GRSPY-----IPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P G V VH +L +GT+ + FTLG +VI+ D+ + M GE A+ T
Sbjct: 30 PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
+ YG G P IPP+A L +V L
Sbjct: 86 ADSKYCYGPQGRSPYIPPHAALCLEVTL 113
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
KK L G G RP +G VV V L L++GT +EE F + VI LD
Sbjct: 17 KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
+V M E A++T +Y +G Q +PP++ + EV L
Sbjct: 71 LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113
Score = 35.0 bits (79), Expect = 0.087, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEK 234
V V+ + LE+G V + + FT+ D L +V M GE ++ +Y +G +
Sbjct: 36 VTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQ 95
Query: 235 GKSASGNEGAVPPNATLQIALEL 257
G+S +PP+A L + + L
Sbjct: 96 GRSPY-----IPPHAALCLEVTL 113
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P G V VH +L +GT+ + FTLG +VI+ D+ + M GE A+ T
Sbjct: 60 PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
+ YG GS P IPP+A L +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
KK L G G RP +G VV V L L++GT +EE F + VI LD
Sbjct: 47 KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
+V M E A++T +Y +G S+ +PP++ + EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEK 234
V V+ + LE+G V + + FT+ D L +V M GE ++ +Y +G +
Sbjct: 66 VTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQ 125
Query: 235 GKSASGNEGAVPPNATLQIALEL 257
G + +PP+A L + + L
Sbjct: 126 GSRSP----YIPPHAALCLEVTL 144
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
P G V VH +L +GT+ + FTLG +VI+ D+ + M GE A+ T
Sbjct: 34 PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
+ YG GS P IPP+A L +V L
Sbjct: 90 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
KK L G G RP +G VV V L L++GT +EE F + VI LD
Sbjct: 21 KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
+V M E A++T +Y +G S+ +PP++ + EV L
Sbjct: 75 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEK 234
V V+ + LE+G V + + FT+ D L +V M GE ++ +Y +G +
Sbjct: 40 VTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQ 99
Query: 235 GKSASGNEGAVPPNATLQIALEL 257
G + +PP+A L + + L
Sbjct: 100 GSRSP----YIPPHAALCLEVTL 118
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 72 QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
+F+ + P + LG + + G IG+ +MK GE A+ + ELAYG+ G S P +
Sbjct: 84 KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELL 141
PP A L ++VE++
Sbjct: 144 PPMADLLYEVEVI 156
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
S EG VPP + +E+ D+K V K+I+KEG G +P++ + +
Sbjct: 28 SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
++ + E++ + E++ + GL V +MK E AL+ + E A+G
Sbjct: 75 RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
E VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
LA V +MK GE+ L+ V + +G++G + N VPP A L +E++ + E
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPN---VPPMADLLYEVEVIGFDETKE 163
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
GNT FK+ + A K+Y K ++Y+E + D + + + + ++C LN ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLCTKKCE 476
+ A C + E
Sbjct: 290 QGAVDSCLEALE 301
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
V VH+T L DGT +S+R+ P F LG ++ +G + + +K G+ F++ P+ A
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 119 YG 120
+G
Sbjct: 91 FG 92
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 54 ENGDEVEVHYTGTLLDGTQFDSS------------RDRS-TPFKFTLGQGNVIKGWDIGI 100
+ G +++V Y G L G FD+S DR P +F +G+G +I+G++ +
Sbjct: 3 DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
Query: 101 KTMKKGENAVFTIPPELAYG 120
M+ G+ IP E AYG
Sbjct: 63 LDMEVGDEKTVKIPAEKAYG 82
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 287 NEGAVVKVKLIGKLQDGTVF------VKK-----GHSEEEQLFEFKTDEEQVIDGLDRAV 335
++G +KV IGKL+ G VF V K E + EF E Q+I G + AV
Sbjct: 3 DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
Query: 336 ITMKKNEVALLTIAPEYAFGS 356
+ M+ + + I E A+G+
Sbjct: 63 LDMEVGDEKTVKIPAEKAYGN 83
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli
Trigger Factor
Length = 106
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 57 DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
D V + +TG++ DG +F+ + ++ F +GQG +I G++ GIK K GE FTI
Sbjct: 19 DRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEE--FTI 70
>pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|1W26|B Chain B, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|2VRH|A Chain A, Structure Of The E. Coli Trigger Factor Bound To A
Translating Ribosome
Length = 432
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 57 DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
D V + +TG++ DG +F+ + ++ F GQG I G++ GIK K GE FTI
Sbjct: 162 DRVTIDFTGSV-DGEEFEGGK--ASDFVLAXGQGRXIPGFEDGIKGHKAGEE--FTI 213
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
+GN LFK G Y A Y +A G + Q +A+ + N AAC LKL+DY
Sbjct: 34 EGNELFKCGDYGGALAAYTQA---------LGLDATPQDQAV---LHRNRAACHLKLEDY 81
Query: 465 KQAEKLCTKKCE 476
+AE +K E
Sbjct: 82 DKAETEASKAIE 93
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 54 ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
E G V++ Y G +DG FD++ + P G+G V+ G D I
Sbjct: 3 EKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 101 KTMKKGENAVFTIPPELAYG 120
M GE +PPE A+G
Sbjct: 62 LEMDVGEEREVVLPPEKAFG 81
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
E QV+ GLD A++ M E + + PE AFG + + + ++P
Sbjct: 50 EGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSK-IKLIP 92
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 54 ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
E G V++ Y G +DG FD++ + P G+G V+ G D I
Sbjct: 3 EKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 101 KTMKKGENAVFTIPPELAYGE 121
M GE +PPE A+G+
Sbjct: 62 LEMDVGEEREVVLPPEKAFGK 82
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
E QV+ GLD A++ M E + + PE AFG + + + ++P
Sbjct: 50 EGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSK-IKLIP 92
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 54 ENGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
++G + HY D GT D SR R P + +G+ + W+ + TM++GE A F
Sbjct: 28 QDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQF 87
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE---EKKQAKALKVACNLNNAACKLKL 461
+GN FK + A +Y++A+ + + + D+ +KK K ++++CNLN A C K
Sbjct: 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK--KNIEISCNLNLATCYNKN 101
Query: 462 KDYKQA 467
KDY +A
Sbjct: 102 KDYPKA 107
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
+GN F+ G Y +A K Y +A+K K AK N AAC KL ++
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIK----------RNPKDAKLYS-----NRAACYTKLLEF 66
Query: 465 KQAEKLCTKKCESSVQ 480
+L K CE +Q
Sbjct: 67 ----QLALKDCEECIQ 78
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359
EF Q+I GL++AV+ + E + IAPE A+G ES
Sbjct: 37 LEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES 78
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 55 NGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMK--KGENAVFT 112
NGD + +TG ++D + S+ ++ ++ T+G + IKG++ G+ MK + + T
Sbjct: 32 NGDIAIIDFTG-IVDNKKLASASAQN--YELTIGSNSFIKGFETGLIAMKVNQKKTLALT 88
Query: 113 IPPELAYGESGSPP 126
P + E S P
Sbjct: 89 FPSDYHVKELQSKP 102
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 32 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 91
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 92 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 151
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 152 RAKQTLPVI 160
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 73 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 132
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 133 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 192
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 193 RAKQTLPVI 201
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 30 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 89
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 90 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 149
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 150 RAKQTLPVI 158
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 28 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 87
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 88 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 147
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 148 RAKQTLPVI 156
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 22 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 81
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 82 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 141
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 142 RAKQTLPVI 150
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE------- 315
VS D KV + G G +RP E + K+IG G V+ K E
Sbjct: 28 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 87
Query: 316 -QLFEFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
Q FK E Q++ LD I KK+EV L L PE + A
Sbjct: 88 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 147
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 148 RAKQTLPVI 156
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 84 KFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP 125
+FT+ QGN + + ++K + A++ P L YG G P
Sbjct: 66 RFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLRYGLPGCP 107
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLF---- 318
VS D KV + G G +RP E + K+IG G V+ K E +
Sbjct: 2 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 61
Query: 319 ----EFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
FK E Q++ LD I KK+EV L L PE + A
Sbjct: 62 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 121
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 122 RAKQTLPVI 130
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLF---- 318
VS D KV + G G +RP E + K+IG G V+ K E +
Sbjct: 6 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 65
Query: 319 ----EFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
FK E Q++ LD I KK+EV L L PE + A
Sbjct: 66 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 125
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 126 RAKQTLPVI 134
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLF---- 318
VS D KV + G G +RP E + K+IG G V+ K E +
Sbjct: 13 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 72
Query: 319 ----EFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
FK E Q++ LD I KK+EV L L PE + A
Sbjct: 73 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 132
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 133 RAKQTLPVI 141
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLF---- 318
VS D KV + G G +RP E + K+IG G V+ K E +
Sbjct: 6 VSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 65
Query: 319 ----EFKTDEEQVIDGLDRAVITM----------KKNEVAL---LTIAPEYAFGSA---- 357
FK E Q++ LD I KK+EV L L PE + A
Sbjct: 66 LQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 125
Query: 358 ESQQELAVV 366
++Q L V+
Sbjct: 126 RAKQTLPVI 134
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 386 ESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQ 442
+ W M +GN L++ G A+ +Y A+ K ++ G E Q
Sbjct: 1 DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCT 472
LN CKL +++Y + C+
Sbjct: 61 LDQQITPLLLNYCQCKLVVEEYYEVLDHCS 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,049,392
Number of Sequences: 62578
Number of extensions: 555009
Number of successful extensions: 1382
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 228
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)