Query 011003
Match_columns 496
No_of_seqs 478 out of 3764
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.7E-56 5.9E-61 428.1 29.8 297 162-495 2-304 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 3E-34 6.5E-39 276.2 18.7 316 45-481 1-324 (397)
3 KOG0549 FKBP-type peptidyl-pro 100.0 6.8E-31 1.5E-35 224.9 16.3 176 197-386 1-180 (188)
4 KOG0545 Aryl-hydrocarbon recep 100.0 8.7E-31 1.9E-35 234.0 8.8 223 269-494 9-276 (329)
5 KOG0549 FKBP-type peptidyl-pro 100.0 1.8E-27 3.9E-32 203.9 15.4 169 85-262 1-177 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 3.5E-27 7.5E-32 177.6 11.7 106 38-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 9.6E-27 2.1E-31 204.3 12.6 108 33-143 97-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-25 2.8E-30 169.2 11.1 106 271-381 2-107 (108)
9 COG0545 FkpA FKBP-type peptidy 99.9 2.7E-23 5.9E-28 182.6 11.8 107 267-381 98-204 (205)
10 PRK11570 peptidyl-prolyl cis-t 99.9 1.9E-22 4.1E-27 184.2 14.7 108 33-143 98-205 (206)
11 TIGR03516 ppisom_GldI peptidyl 99.9 1.7E-21 3.6E-26 173.7 14.6 110 33-144 65-176 (177)
12 KOG0552 FKBP-type peptidyl-pro 99.9 2.1E-21 4.6E-26 175.3 13.2 108 33-143 116-225 (226)
13 PRK10902 FKBP-type peptidyl-pr 99.8 7E-20 1.5E-24 173.4 14.7 109 33-145 142-250 (269)
14 PRK11570 peptidyl-prolyl cis-t 99.8 4.8E-19 1E-23 161.9 13.6 107 267-381 99-205 (206)
15 KOG0552 FKBP-type peptidyl-pro 99.8 3.2E-19 6.9E-24 161.3 11.9 109 266-382 116-226 (226)
16 PF00254 FKBP_C: FKBP-type pep 99.8 6.1E-19 1.3E-23 142.3 11.9 93 49-141 1-94 (94)
17 COG1047 SlpA FKBP-type peptidy 99.8 1.7E-19 3.7E-24 156.2 9.0 136 52-199 2-142 (174)
18 PRK15095 FKBP-type peptidyl-pr 99.8 2.2E-19 4.8E-24 157.1 9.8 126 52-193 4-139 (156)
19 TIGR03516 ppisom_GldI peptidyl 99.8 1.1E-18 2.3E-23 155.7 13.5 109 267-382 66-176 (177)
20 PF00254 FKBP_C: FKBP-type pep 99.8 6.5E-18 1.4E-22 136.3 12.2 94 282-379 1-94 (94)
21 PRK10737 FKBP-type peptidyl-pr 99.8 5.4E-18 1.2E-22 151.9 10.8 126 52-194 2-136 (196)
22 PRK10902 FKBP-type peptidyl-pr 99.7 7.6E-17 1.7E-21 152.8 14.0 107 268-383 144-250 (269)
23 KOG4234 TPR repeat-containing 99.7 5.9E-17 1.3E-21 141.6 7.1 90 395-494 91-180 (271)
24 KOG0547 Translocase of outer m 99.7 7.5E-17 1.6E-21 157.9 5.8 95 387-496 103-197 (606)
25 KOG0553 TPR repeat-containing 99.6 2.3E-16 5E-21 147.0 4.8 90 391-495 73-162 (304)
26 KOG0551 Hsp90 co-chaperone CNS 99.5 4.1E-15 8.9E-20 139.6 5.7 88 397-495 79-166 (390)
27 PRK15095 FKBP-type peptidyl-pr 99.5 1.9E-13 4.2E-18 119.6 10.5 72 285-358 4-75 (156)
28 KOG0548 Molecular co-chaperone 99.5 2.3E-14 5E-19 142.5 4.4 84 397-495 356-439 (539)
29 KOG4648 Uncharacterized conser 99.4 2.2E-14 4.9E-19 135.0 1.4 89 392-495 90-178 (536)
30 COG1047 SlpA FKBP-type peptidy 99.4 3.9E-12 8.4E-17 110.6 10.3 72 286-359 3-74 (174)
31 PRK10737 FKBP-type peptidyl-pr 99.3 5.2E-12 1.1E-16 113.5 10.4 71 286-359 3-73 (196)
32 TIGR00990 3a0801s09 mitochondr 99.3 1.5E-12 3.3E-17 141.0 7.5 114 365-495 94-207 (615)
33 KOG0550 Molecular chaperone (D 99.3 2.1E-12 4.6E-17 124.7 3.6 91 394-495 244-334 (486)
34 KOG4642 Chaperone-dependent E3 99.2 2.1E-12 4.5E-17 116.4 2.0 83 397-494 8-90 (284)
35 KOG0548 Molecular co-chaperone 99.2 5.3E-12 1.1E-16 125.9 3.3 83 399-496 2-84 (539)
36 KOG0376 Serine-threonine phosp 99.1 1.7E-11 3.7E-16 121.5 0.9 83 398-495 3-85 (476)
37 PF13414 TPR_11: TPR repeat; P 99.0 6.6E-10 1.4E-14 83.7 5.7 66 399-479 3-69 (69)
38 PLN03088 SGT1, suppressor of 98.9 8.3E-10 1.8E-14 111.0 4.7 82 399-495 2-83 (356)
39 TIGR00115 tig trigger factor. 98.8 2.1E-08 4.6E-13 103.0 9.7 101 51-159 145-245 (408)
40 KOG0546 HSP90 co-chaperone CPR 98.8 1.5E-09 3.3E-14 103.7 0.1 105 391-495 214-322 (372)
41 PRK01490 tig trigger factor; P 98.7 6.6E-08 1.4E-12 100.2 9.7 99 52-158 157-255 (435)
42 KOG1308 Hsp70-interacting prot 98.7 3.7E-09 8.1E-14 100.5 -0.2 90 391-495 106-195 (377)
43 PRK15363 pathogenicity island 98.6 5.4E-08 1.2E-12 84.1 6.4 83 398-495 34-116 (157)
44 PRK15359 type III secretion sy 98.6 5.7E-08 1.2E-12 84.6 5.0 79 402-495 27-105 (144)
45 COG0544 Tig FKBP-type peptidyl 98.6 1.3E-07 2.8E-12 96.4 8.2 108 42-159 149-256 (441)
46 KOG0550 Molecular chaperone (D 98.6 5.9E-08 1.3E-12 94.4 4.5 89 392-495 42-130 (486)
47 PF13432 TPR_16: Tetratricopep 98.5 1.9E-07 4E-12 69.3 5.3 64 404-482 2-65 (65)
48 PRK15359 type III secretion sy 98.5 1E-07 2.2E-12 83.0 3.9 80 399-493 58-137 (144)
49 TIGR00115 tig trigger factor. 98.4 1.7E-06 3.7E-11 88.9 12.5 87 285-384 146-232 (408)
50 KOG0545 Aryl-hydrocarbon recep 98.4 3.7E-08 8E-13 89.5 0.2 114 35-149 8-162 (329)
51 KOG1310 WD40 repeat protein [G 98.4 1.5E-07 3.2E-12 94.1 3.5 88 393-495 368-458 (758)
52 PRK01490 tig trigger factor; P 98.3 5.1E-06 1.1E-10 86.1 12.5 87 285-384 157-243 (435)
53 PF14559 TPR_19: Tetratricopep 98.3 3.2E-07 7E-12 68.6 2.6 66 409-489 1-66 (68)
54 PF13371 TPR_9: Tetratricopept 98.3 1.1E-06 2.5E-11 66.6 5.2 68 407-489 3-70 (73)
55 PF13424 TPR_12: Tetratricopep 98.3 3.6E-06 7.9E-11 64.8 7.5 74 397-478 3-76 (78)
56 TIGR02552 LcrH_SycD type III s 98.3 1.1E-06 2.4E-11 75.4 4.9 81 399-494 17-97 (135)
57 PRK11189 lipoprotein NlpI; Pro 98.1 2.6E-06 5.7E-11 83.7 5.4 81 399-494 64-144 (296)
58 KOG4555 TPR repeat-containing 98.1 5.8E-06 1.2E-10 68.2 6.4 86 394-494 38-127 (175)
59 PF00515 TPR_1: Tetratricopept 98.1 2.9E-06 6.3E-11 53.9 3.5 33 449-481 2-34 (34)
60 PRK02603 photosystem I assembl 98.1 7.1E-06 1.5E-10 73.8 6.7 88 395-494 31-118 (172)
61 PF13414 TPR_11: TPR repeat; P 98.0 2E-06 4.3E-11 64.5 1.7 48 448-495 3-50 (69)
62 CHL00033 ycf3 photosystem I as 98.0 1.6E-05 3.4E-10 71.2 7.0 86 396-493 32-117 (168)
63 PF12895 Apc3: Anaphase-promot 98.0 2.7E-06 5.9E-11 66.6 1.8 70 412-495 2-71 (84)
64 COG0544 Tig FKBP-type peptidyl 98.0 6.1E-05 1.3E-09 77.1 11.5 85 286-383 158-242 (441)
65 PLN03088 SGT1, suppressor of 98.0 8E-06 1.7E-10 82.3 5.1 78 400-492 37-114 (356)
66 PF13512 TPR_18: Tetratricopep 97.9 1.7E-05 3.6E-10 67.6 5.8 83 400-494 11-96 (142)
67 PRK10866 outer membrane biogen 97.9 3.5E-05 7.7E-10 73.2 7.5 80 401-492 34-116 (243)
68 PRK15331 chaperone protein Sic 97.9 2.4E-05 5.3E-10 68.1 5.6 83 398-495 36-118 (165)
69 cd00189 TPR Tetratricopeptide 97.9 1.5E-05 3.3E-10 62.1 4.0 78 402-494 3-80 (100)
70 KOG4626 O-linked N-acetylgluco 97.8 2.4E-05 5.2E-10 80.1 5.9 51 443-493 451-501 (966)
71 TIGR03302 OM_YfiO outer membra 97.8 3.6E-05 7.8E-10 72.8 6.9 85 398-494 32-119 (235)
72 PRK10370 formate-dependent nit 97.8 2.3E-05 5E-10 72.1 5.1 81 399-494 73-156 (198)
73 TIGR02795 tol_pal_ybgF tol-pal 97.8 3.3E-05 7.1E-10 64.2 5.6 82 401-494 4-88 (119)
74 PF07719 TPR_2: Tetratricopept 97.8 3E-05 6.6E-10 49.0 4.1 33 449-481 2-34 (34)
75 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 3.6E-05 7.8E-10 77.4 5.7 71 395-477 71-141 (453)
76 TIGR00990 3a0801s09 mitochondr 97.7 3.4E-05 7.4E-10 83.9 5.6 95 400-494 332-445 (615)
77 KOG0624 dsRNA-activated protei 97.7 3.8E-05 8.2E-10 73.5 5.0 82 397-493 36-117 (504)
78 KOG4626 O-linked N-acetylgluco 97.7 4.8E-05 1E-09 78.0 5.6 93 401-493 322-433 (966)
79 PF13428 TPR_14: Tetratricopep 97.7 4.5E-05 9.8E-10 51.6 3.8 43 449-491 2-44 (44)
80 KOG0624 dsRNA-activated protei 97.6 2.3E-05 5.1E-10 74.9 2.3 89 395-494 265-353 (504)
81 TIGR02552 LcrH_SycD type III s 97.6 7.8E-05 1.7E-09 63.8 4.8 70 400-484 52-121 (135)
82 PF13525 YfiO: Outer membrane 97.6 8.3E-05 1.8E-09 68.7 5.2 84 399-494 5-91 (203)
83 KOG4234 TPR repeat-containing 97.5 0.00013 2.8E-09 64.9 5.3 77 399-492 134-210 (271)
84 KOG4151 Myosin assembly protei 97.5 5E-05 1.1E-09 80.3 3.0 93 391-494 45-139 (748)
85 TIGR02521 type_IV_pilW type IV 97.5 0.00016 3.5E-09 67.0 5.8 80 399-493 31-110 (234)
86 KOG1125 TPR repeat-containing 97.5 9.3E-05 2E-09 75.5 4.1 77 405-496 436-512 (579)
87 PRK11189 lipoprotein NlpI; Pro 97.4 0.00021 4.6E-09 70.1 6.1 69 399-482 98-166 (296)
88 KOG0553 TPR repeat-containing 97.4 0.00028 6.1E-09 66.8 6.5 64 404-482 120-183 (304)
89 PF15015 NYD-SP12_N: Spermatog 97.4 0.00021 4.5E-09 70.2 5.6 92 402-493 179-273 (569)
90 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00016 3.5E-09 50.7 3.5 37 450-486 3-39 (53)
91 PRK12370 invasion protein regu 97.4 0.00022 4.9E-09 76.4 5.7 71 404-489 343-413 (553)
92 PRK09782 bacteriophage N4 rece 97.3 0.00021 4.6E-09 80.6 5.2 76 404-494 614-689 (987)
93 TIGR02521 type_IV_pilW type IV 97.3 0.00039 8.5E-09 64.4 5.6 78 404-494 104-181 (234)
94 PRK15179 Vi polysaccharide bio 97.3 0.00024 5.2E-09 77.2 4.6 81 399-494 120-200 (694)
95 PRK15363 pathogenicity island 97.3 0.00022 4.8E-09 61.8 3.3 78 402-494 72-151 (157)
96 PF13181 TPR_8: Tetratricopept 97.3 0.00039 8.3E-09 43.9 3.6 33 449-481 2-34 (34)
97 PF12968 DUF3856: Domain of Un 97.3 0.001 2.2E-08 54.1 6.7 94 400-496 10-114 (144)
98 COG3063 PilF Tfp pilus assembl 97.2 0.00034 7.3E-09 63.9 3.9 81 399-492 103-183 (250)
99 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.00092 2E-08 55.3 6.1 71 402-484 42-112 (119)
100 KOG1155 Anaphase-promoting com 97.1 0.00043 9.3E-09 69.0 4.2 74 405-493 336-409 (559)
101 PRK12370 invasion protein regu 97.1 0.00031 6.7E-09 75.3 3.4 70 411-495 316-385 (553)
102 COG5010 TadD Flp pilus assembl 97.1 0.0005 1.1E-08 63.9 4.3 78 401-493 102-179 (257)
103 PF13432 TPR_16: Tetratricopep 97.1 0.00022 4.7E-09 52.6 1.4 44 452-495 1-44 (65)
104 PLN02789 farnesyltranstransfer 97.1 0.00059 1.3E-08 67.4 4.9 50 444-493 138-187 (320)
105 COG3063 PilF Tfp pilus assembl 97.1 0.0016 3.4E-08 59.6 6.9 84 395-493 31-114 (250)
106 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.6E-08 51.4 5.5 58 401-474 27-84 (84)
107 PLN02789 farnesyltranstransfer 97.1 0.00057 1.2E-08 67.5 4.4 66 409-489 47-113 (320)
108 PRK15179 Vi polysaccharide bio 97.1 0.00054 1.2E-08 74.5 4.6 82 399-495 86-167 (694)
109 KOG0547 Translocase of outer m 97.1 0.00062 1.3E-08 68.3 4.5 97 397-493 324-439 (606)
110 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.00051 1.1E-08 69.2 3.4 53 443-495 70-125 (453)
111 PRK10370 formate-dependent nit 97.0 0.00064 1.4E-08 62.5 3.8 67 411-492 51-117 (198)
112 PF03704 BTAD: Bacterial trans 97.0 0.0044 9.4E-08 53.8 8.6 96 399-494 6-108 (146)
113 PRK10803 tol-pal system protei 96.9 0.0021 4.5E-08 61.7 6.4 80 403-494 146-229 (263)
114 KOG1128 Uncharacterized conser 96.9 0.00099 2.1E-08 70.0 4.2 78 402-494 488-565 (777)
115 KOG1840 Kinesin light chain [C 96.9 0.0024 5.3E-08 66.4 7.1 77 395-478 237-313 (508)
116 PRK09782 bacteriophage N4 rece 96.8 0.0015 3.3E-08 73.9 5.9 75 401-490 645-719 (987)
117 COG4783 Putative Zn-dependent 96.8 0.0013 2.7E-08 66.4 4.4 76 405-495 346-421 (484)
118 PRK15174 Vi polysaccharide exp 96.8 0.0016 3.5E-08 71.2 5.3 78 401-493 286-363 (656)
119 KOG2076 RNA polymerase III tra 96.8 0.0022 4.8E-08 68.8 6.0 84 398-495 413-496 (895)
120 PRK11447 cellulose synthase su 96.8 0.0014 3E-08 76.6 4.9 75 403-492 355-429 (1157)
121 PRK02603 photosystem I assembl 96.7 0.0038 8.2E-08 56.0 6.6 69 399-482 72-154 (172)
122 PRK15174 Vi polysaccharide exp 96.7 0.0016 3.5E-08 71.2 4.7 50 446-495 282-331 (656)
123 TIGR03302 OM_YfiO outer membra 96.7 0.0039 8.5E-08 58.8 6.9 83 413-495 129-216 (235)
124 cd00189 TPR Tetratricopeptide 96.7 0.005 1.1E-07 47.3 6.2 65 401-480 36-100 (100)
125 KOG1173 Anaphase-promoting com 96.7 0.0023 5.1E-08 65.4 5.0 67 401-482 457-523 (611)
126 PRK11447 cellulose synthase su 96.7 0.0021 4.4E-08 75.2 5.3 77 401-492 463-539 (1157)
127 KOG4814 Uncharacterized conser 96.6 0.0059 1.3E-07 63.3 7.4 75 399-482 354-428 (872)
128 PF13429 TPR_15: Tetratricopep 96.6 0.0013 2.8E-08 64.0 2.6 94 401-494 148-260 (280)
129 KOG1126 DNA-binding cell divis 96.6 0.0019 4.1E-08 67.2 3.8 81 400-495 490-570 (638)
130 smart00028 TPR Tetratricopepti 96.6 0.0036 7.9E-08 37.8 3.8 33 449-481 2-34 (34)
131 PF13176 TPR_7: Tetratricopept 96.6 0.0018 3.9E-08 41.5 2.3 29 450-478 1-29 (36)
132 TIGR02917 PEP_TPR_lipo putativ 96.5 0.003 6.5E-08 71.1 5.4 81 399-494 22-102 (899)
133 KOG1125 TPR repeat-containing 96.5 0.0005 1.1E-08 70.3 -0.8 64 402-480 467-530 (579)
134 PRK11788 tetratricopeptide rep 96.5 0.0065 1.4E-07 61.9 7.3 46 449-494 181-226 (389)
135 TIGR02917 PEP_TPR_lipo putativ 96.5 0.0034 7.3E-08 70.7 5.4 96 398-493 124-238 (899)
136 COG4785 NlpI Lipoprotein NlpI, 96.4 0.0049 1.1E-07 55.9 5.0 80 399-493 65-144 (297)
137 KOG1173 Anaphase-promoting com 96.4 0.003 6.4E-08 64.7 4.1 85 401-493 416-500 (611)
138 PRK10049 pgaA outer membrane p 96.4 0.0064 1.4E-07 67.9 7.2 78 403-495 363-440 (765)
139 KOG4648 Uncharacterized conser 96.4 0.0071 1.5E-07 58.3 6.3 65 403-482 135-199 (536)
140 COG4105 ComL DNA uptake lipopr 96.3 0.0091 2E-07 55.8 6.3 84 398-493 33-119 (254)
141 KOG2003 TPR repeat-containing 96.3 0.0016 3.5E-08 64.6 1.5 78 404-492 242-319 (840)
142 KOG2003 TPR repeat-containing 96.3 0.0025 5.3E-08 63.4 2.6 92 400-491 491-601 (840)
143 PF09976 TPR_21: Tetratricopep 96.3 0.012 2.6E-07 51.1 6.6 81 401-494 50-130 (145)
144 PF12688 TPR_5: Tetratrico pep 96.2 0.014 3.1E-07 48.8 6.6 67 402-480 4-70 (120)
145 PF10579 Rapsyn_N: Rapsyn N-te 96.2 0.027 5.8E-07 42.6 7.2 69 397-477 4-72 (80)
146 PF13431 TPR_17: Tetratricopep 96.2 0.0019 4E-08 40.9 0.9 34 421-469 1-34 (34)
147 PF13371 TPR_9: Tetratricopept 96.2 0.0026 5.7E-08 47.8 1.8 41 455-495 2-42 (73)
148 PRK10049 pgaA outer membrane p 96.2 0.0059 1.3E-07 68.2 5.2 91 402-493 52-161 (765)
149 KOG4162 Predicted calmodulin-b 96.1 0.0044 9.6E-08 65.6 3.7 82 399-495 684-767 (799)
150 PRK10803 tol-pal system protei 96.1 0.015 3.2E-07 55.9 7.0 71 401-483 182-252 (263)
151 PRK11788 tetratricopeptide rep 96.1 0.013 2.9E-07 59.5 7.1 34 448-481 141-174 (389)
152 KOG2002 TPR-containing nuclear 96.1 0.0067 1.4E-07 65.8 4.7 78 398-489 163-240 (1018)
153 KOG1126 DNA-binding cell divis 96.1 0.0031 6.7E-08 65.7 2.1 95 400-494 422-535 (638)
154 PF13174 TPR_6: Tetratricopept 96.0 0.0074 1.6E-07 37.4 3.1 32 450-481 2-33 (33)
155 PF13431 TPR_17: Tetratricopep 96.0 0.0017 3.6E-08 41.1 -0.1 26 470-495 1-26 (34)
156 KOG2076 RNA polymerase III tra 96.0 0.01 2.2E-07 63.9 5.6 95 399-493 139-252 (895)
157 PF13424 TPR_12: Tetratricopep 96.0 0.0031 6.6E-08 48.2 1.2 51 445-495 2-59 (78)
158 PF14938 SNAP: Soluble NSF att 95.9 0.025 5.4E-07 55.1 7.8 71 398-477 113-184 (282)
159 CHL00033 ycf3 photosystem I as 95.9 0.021 4.6E-07 50.8 6.6 75 400-482 73-154 (168)
160 KOG4340 Uncharacterized conser 95.7 0.009 1.9E-07 56.6 3.5 64 399-477 144-207 (459)
161 PF09295 ChAPs: ChAPs (Chs5p-A 95.6 0.021 4.5E-07 57.9 5.9 71 410-495 211-281 (395)
162 PF14559 TPR_19: Tetratricopep 95.6 0.0048 1E-07 45.6 0.9 38 458-495 1-38 (68)
163 KOG1840 Kinesin light chain [C 95.6 0.036 7.8E-07 57.9 7.6 75 397-478 323-397 (508)
164 PF06552 TOM20_plant: Plant sp 95.6 0.0094 2E-07 52.7 2.8 66 415-495 7-82 (186)
165 KOG2002 TPR-containing nuclear 95.5 0.029 6.4E-07 61.0 6.9 82 402-495 273-355 (1018)
166 PF09295 ChAPs: ChAPs (Chs5p-A 95.4 0.038 8.2E-07 56.0 6.8 74 399-488 234-307 (395)
167 PF13374 TPR_10: Tetratricopep 95.2 0.029 6.3E-07 36.7 3.7 31 448-478 2-32 (42)
168 PF06552 TOM20_plant: Plant sp 95.2 0.029 6.2E-07 49.7 4.5 60 413-489 49-119 (186)
169 COG1729 Uncharacterized protei 95.1 0.033 7.1E-07 52.6 4.9 81 402-494 144-227 (262)
170 KOG1155 Anaphase-promoting com 95.0 0.03 6.5E-07 56.3 4.5 97 399-495 364-479 (559)
171 PRK14574 hmsH outer membrane p 95.0 0.037 8E-07 61.6 5.8 96 398-493 33-147 (822)
172 PF13429 TPR_15: Tetratricopep 94.8 0.036 7.8E-07 53.8 4.7 76 405-493 116-191 (280)
173 PRK10153 DNA-binding transcrip 94.7 0.067 1.4E-06 56.6 6.6 65 405-485 426-490 (517)
174 cd05804 StaR_like StaR_like; a 94.7 0.034 7.4E-07 55.8 4.2 62 404-480 119-180 (355)
175 PRK15331 chaperone protein Sic 94.6 0.046 9.9E-07 47.9 4.3 74 404-494 76-149 (165)
176 PF12968 DUF3856: Domain of Un 94.6 0.15 3.2E-06 41.9 6.7 70 404-477 60-129 (144)
177 cd05804 StaR_like StaR_like; a 94.5 0.097 2.1E-06 52.5 7.2 93 402-494 46-160 (355)
178 PF04733 Coatomer_E: Coatomer 94.5 0.026 5.6E-07 55.1 2.7 64 414-492 182-245 (290)
179 PF12862 Apc5: Anaphase-promot 94.3 0.2 4.4E-06 39.8 7.2 64 409-478 8-71 (94)
180 PF07719 TPR_2: Tetratricopept 94.3 0.076 1.6E-06 32.9 3.8 31 400-430 2-32 (34)
181 PF10952 DUF2753: Protein of u 94.2 0.35 7.5E-06 39.9 8.1 83 401-483 3-89 (140)
182 PF09976 TPR_21: Tetratricopep 94.2 0.23 4.9E-06 43.0 7.8 89 395-495 7-98 (145)
183 KOG3824 Huntingtin interacting 94.1 0.074 1.6E-06 50.8 4.7 81 396-491 113-193 (472)
184 KOG1129 TPR repeat-containing 94.0 0.065 1.4E-06 51.6 4.3 72 408-494 333-407 (478)
185 COG4235 Cytochrome c biogenesi 94.0 0.063 1.4E-06 51.4 4.2 83 399-481 156-260 (287)
186 KOG1174 Anaphase-promoting com 94.0 0.13 2.8E-06 51.2 6.4 76 399-489 334-409 (564)
187 KOG1130 Predicted G-alpha GTPa 93.7 0.069 1.5E-06 53.0 4.0 75 394-477 190-264 (639)
188 PF00515 TPR_1: Tetratricopept 93.7 0.11 2.3E-06 32.4 3.6 30 400-429 2-31 (34)
189 PF14938 SNAP: Soluble NSF att 93.3 0.26 5.7E-06 47.9 7.3 60 409-477 84-144 (282)
190 PF10300 DUF3808: Protein of u 93.1 0.2 4.4E-06 52.4 6.7 74 404-489 272-345 (468)
191 KOG0376 Serine-threonine phosp 93.0 0.07 1.5E-06 54.1 2.8 66 405-485 44-109 (476)
192 KOG3364 Membrane protein invol 93.0 0.17 3.7E-06 42.5 4.6 40 447-486 70-109 (149)
193 KOG3785 Uncharacterized conser 92.9 0.26 5.6E-06 48.2 6.2 77 400-491 152-228 (557)
194 PF13176 TPR_7: Tetratricopept 92.7 0.16 3.6E-06 32.2 3.3 27 402-428 2-28 (36)
195 KOG1174 Anaphase-promoting com 92.6 0.3 6.6E-06 48.7 6.4 66 404-485 443-508 (564)
196 cd02681 MIT_calpain7_1 MIT: do 92.4 0.67 1.5E-05 35.2 6.8 62 397-458 4-67 (76)
197 cd02682 MIT_AAA_Arch MIT: doma 92.4 0.67 1.4E-05 35.0 6.7 64 397-460 4-68 (75)
198 KOG0551 Hsp90 co-chaperone CNS 92.4 0.11 2.4E-06 50.2 3.2 67 403-484 123-189 (390)
199 PF10602 RPN7: 26S proteasome 92.4 0.71 1.5E-05 41.5 8.2 69 397-477 34-102 (177)
200 KOG3060 Uncharacterized conser 92.2 0.24 5.3E-06 46.2 5.0 72 400-486 155-229 (289)
201 KOG1941 Acetylcholine receptor 92.2 0.36 7.7E-06 47.4 6.2 98 398-495 5-135 (518)
202 PRK14720 transcript cleavage f 92.1 0.28 6E-06 54.7 6.2 43 452-494 227-269 (906)
203 cd02683 MIT_1 MIT: domain cont 91.9 0.59 1.3E-05 35.6 6.1 62 397-458 4-66 (77)
204 KOG1128 Uncharacterized conser 91.8 0.2 4.4E-06 53.2 4.5 71 401-486 521-591 (777)
205 PRK14720 transcript cleavage f 91.7 0.23 5.1E-06 55.3 5.1 44 449-492 117-160 (906)
206 PF12569 NARP1: NMDA receptor- 91.6 0.4 8.6E-06 50.6 6.5 70 407-491 12-81 (517)
207 PRK14574 hmsH outer membrane p 91.6 0.23 4.9E-06 55.5 4.9 30 402-431 105-134 (822)
208 PF12569 NARP1: NMDA receptor- 91.4 0.22 4.7E-06 52.6 4.3 52 444-495 190-241 (517)
209 COG1729 Uncharacterized protei 91.3 0.62 1.3E-05 44.2 6.8 69 405-485 184-252 (262)
210 KOG2376 Signal recognition par 90.9 0.89 1.9E-05 47.4 7.9 82 401-482 177-258 (652)
211 cd02684 MIT_2 MIT: domain cont 90.9 0.83 1.8E-05 34.6 5.9 36 396-431 3-38 (75)
212 cd02677 MIT_SNX15 MIT: domain 90.9 1.1 2.4E-05 33.9 6.5 61 396-456 3-64 (75)
213 PF08631 SPO22: Meiosis protei 90.9 0.79 1.7E-05 44.5 7.4 87 389-477 25-112 (278)
214 KOG2796 Uncharacterized conser 90.7 0.24 5.1E-06 46.5 3.3 64 403-481 256-319 (366)
215 COG4976 Predicted methyltransf 90.6 0.43 9.3E-06 44.0 4.8 61 407-482 3-63 (287)
216 PF04212 MIT: MIT (microtubule 90.4 1.2 2.6E-05 33.0 6.4 35 397-431 3-37 (69)
217 TIGR00540 hemY_coli hemY prote 90.2 0.55 1.2E-05 48.4 5.9 100 395-494 80-199 (409)
218 COG4700 Uncharacterized protei 90.1 1.2 2.6E-05 39.8 7.0 65 402-480 92-156 (251)
219 KOG1129 TPR repeat-containing 90.1 0.22 4.8E-06 48.1 2.6 74 404-489 363-436 (478)
220 PF12688 TPR_5: Tetratrico pep 89.8 0.76 1.6E-05 38.4 5.4 76 400-491 39-114 (120)
221 cd02678 MIT_VPS4 MIT: domain c 89.7 1.7 3.6E-05 32.9 6.8 62 396-457 3-65 (75)
222 PRK11906 transcriptional regul 89.7 0.32 7E-06 49.6 3.6 67 414-492 273-348 (458)
223 COG5010 TadD Flp pilus assembl 89.6 0.64 1.4E-05 43.6 5.2 68 401-483 136-203 (257)
224 KOG1586 Protein required for f 89.4 1.3 2.8E-05 41.1 6.8 89 396-493 109-206 (288)
225 cd02656 MIT MIT: domain contai 89.3 1.7 3.7E-05 32.8 6.6 61 396-456 3-64 (75)
226 PRK10747 putative protoheme IX 89.3 0.44 9.5E-06 48.9 4.4 41 454-494 159-199 (398)
227 PF13512 TPR_18: Tetratricopep 88.6 0.99 2.1E-05 38.7 5.3 69 403-483 51-134 (142)
228 KOG1130 Predicted G-alpha GTPa 88.6 0.73 1.6E-05 46.0 5.1 95 399-494 17-147 (639)
229 PF13428 TPR_14: Tetratricopep 88.4 0.94 2E-05 30.1 4.1 31 402-432 4-34 (44)
230 PF03704 BTAD: Bacterial trans 88.4 1.6 3.5E-05 37.5 6.7 74 387-475 48-123 (146)
231 KOG1156 N-terminal acetyltrans 88.0 0.3 6.6E-06 51.3 2.1 68 409-491 85-152 (700)
232 COG2956 Predicted N-acetylgluc 87.4 1.2 2.7E-05 43.1 5.7 50 445-494 177-226 (389)
233 smart00745 MIT Microtubule Int 87.4 3.7 8.1E-05 31.0 7.4 36 396-431 5-40 (77)
234 PRK10153 DNA-binding transcrip 87.3 2.7 5.8E-05 44.6 8.8 45 449-494 421-465 (517)
235 cd02680 MIT_calpain7_2 MIT: do 87.0 3.4 7.4E-05 31.2 6.7 35 397-431 4-38 (75)
236 COG4783 Putative Zn-dependent 86.9 0.87 1.9E-05 46.5 4.6 48 448-495 340-387 (484)
237 PF13525 YfiO: Outer membrane 86.8 1.4 3E-05 40.5 5.6 84 412-495 103-191 (203)
238 KOG3785 Uncharacterized conser 86.5 0.51 1.1E-05 46.1 2.6 56 405-475 63-118 (557)
239 PF13181 TPR_8: Tetratricopept 86.4 1.2 2.5E-05 27.4 3.5 29 400-428 2-30 (34)
240 PF11817 Foie-gras_1: Foie gra 86.2 2.9 6.4E-05 39.7 7.7 64 404-476 183-246 (247)
241 PF06957 COPI_C: Coatomer (COP 86.0 3.6 7.7E-05 42.0 8.4 88 395-482 200-334 (422)
242 KOG2471 TPR repeat-containing 86.0 0.56 1.2E-05 47.8 2.6 94 400-493 284-380 (696)
243 PF10516 SHNi-TPR: SHNi-TPR; 85.6 1.2 2.7E-05 28.7 3.3 29 450-478 3-31 (38)
244 PRK10941 hypothetical protein; 85.1 1 2.2E-05 43.3 4.0 52 444-495 177-228 (269)
245 COG3947 Response regulator con 84.8 2.2 4.7E-05 40.9 5.8 51 434-484 265-315 (361)
246 PRK10941 hypothetical protein; 84.2 3.2 6.8E-05 40.0 6.8 68 406-488 188-255 (269)
247 KOG3060 Uncharacterized conser 83.5 2.2 4.7E-05 40.1 5.1 92 402-493 89-199 (289)
248 KOG2796 Uncharacterized conser 83.5 1.4 3.1E-05 41.5 4.0 48 447-494 251-298 (366)
249 PF02259 FAT: FAT domain; Int 82.4 2.7 5.9E-05 41.9 6.0 92 403-494 188-304 (352)
250 KOG4340 Uncharacterized conser 82.3 0.96 2.1E-05 43.3 2.4 69 409-492 20-88 (459)
251 PF13374 TPR_10: Tetratricopep 82.3 2.2 4.7E-05 27.4 3.6 32 399-430 2-33 (42)
252 KOG0739 AAA+-type ATPase [Post 82.1 2 4.3E-05 41.4 4.4 37 395-431 6-42 (439)
253 cd02679 MIT_spastin MIT: domai 82.0 11 0.00023 28.9 7.6 67 396-462 5-77 (79)
254 PRK11906 transcriptional regul 81.6 2.8 6.1E-05 43.0 5.6 33 448-480 372-404 (458)
255 KOG1127 TPR repeat-containing 81.4 1.2 2.5E-05 49.4 2.9 70 405-489 568-637 (1238)
256 KOG4555 TPR repeat-containing 81.3 5.1 0.00011 33.8 6.0 73 397-480 75-147 (175)
257 COG0457 NrfG FOG: TPR repeat [ 81.0 3.4 7.3E-05 36.7 5.7 44 448-491 202-245 (291)
258 KOG1156 N-terminal acetyltrans 81.0 1.5 3.2E-05 46.4 3.4 42 448-489 75-116 (700)
259 KOG2376 Signal recognition par 81.0 2.6 5.6E-05 44.2 5.1 70 404-476 115-203 (652)
260 KOG4162 Predicted calmodulin-b 80.4 2.7 5.8E-05 45.4 5.1 73 408-495 659-731 (799)
261 PRK10747 putative protoheme IX 80.3 5.8 0.00013 40.6 7.6 73 395-482 80-152 (398)
262 KOG1127 TPR repeat-containing 79.6 2.8 6E-05 46.6 5.0 71 402-487 5-76 (1238)
263 PRK10866 outer membrane biogen 79.4 4.6 0.0001 38.3 6.1 81 415-495 140-225 (243)
264 COG2956 Predicted N-acetylgluc 79.4 3.4 7.3E-05 40.3 5.0 29 453-481 219-247 (389)
265 PF07721 TPR_4: Tetratricopept 79.4 2.7 5.8E-05 24.4 2.8 24 449-472 2-25 (26)
266 KOG3081 Vesicle coat complex C 79.3 4.1 8.8E-05 38.6 5.4 62 412-488 186-247 (299)
267 PF14863 Alkyl_sulf_dimr: Alky 78.6 1.3 2.8E-05 38.0 1.9 47 449-495 71-117 (141)
268 PF13174 TPR_6: Tetratricopept 77.9 3.6 7.7E-05 24.8 3.3 29 402-430 3-31 (33)
269 smart00028 TPR Tetratricopepti 77.6 2.8 6.2E-05 24.1 2.8 27 402-428 4-30 (34)
270 TIGR03504 FimV_Cterm FimV C-te 77.2 3.6 7.9E-05 27.5 3.3 27 451-477 2-28 (44)
271 TIGR00540 hemY_coli hemY prote 77.1 12 0.00025 38.5 8.7 75 400-482 78-152 (409)
272 KOG1941 Acetylcholine receptor 76.2 1.4 3.1E-05 43.3 1.5 81 405-494 128-218 (518)
273 PF00244 14-3-3: 14-3-3 protei 75.6 6.3 0.00014 37.2 5.7 55 415-476 142-197 (236)
274 KOG0686 COP9 signalosome, subu 75.5 7.1 0.00015 39.2 6.1 64 402-477 153-216 (466)
275 PF09986 DUF2225: Uncharacteri 75.5 3.7 7.9E-05 38.1 4.0 79 403-491 129-209 (214)
276 PF04733 Coatomer_E: Coatomer 74.6 4.6 0.0001 39.4 4.7 66 402-482 204-270 (290)
277 PF07720 TPR_3: Tetratricopept 72.9 8.5 0.00018 24.5 4.0 31 451-481 4-36 (36)
278 COG0457 NrfG FOG: TPR repeat [ 72.2 6 0.00013 35.1 4.7 74 408-493 139-213 (291)
279 COG4235 Cytochrome c biogenesi 71.9 3.8 8.2E-05 39.5 3.2 49 444-492 152-200 (287)
280 KOG1308 Hsp70-interacting prot 71.8 2.1 4.6E-05 41.9 1.5 66 399-479 148-213 (377)
281 COG4785 NlpI Lipoprotein NlpI, 71.7 1.9 4.2E-05 39.5 1.2 72 396-482 96-167 (297)
282 COG2912 Uncharacterized conser 69.9 9.9 0.00021 36.3 5.5 52 444-495 177-228 (269)
283 KOG1586 Protein required for f 69.1 16 0.00034 34.2 6.3 74 395-478 29-103 (288)
284 KOG0292 Vesicle coat complex C 68.9 25 0.00054 38.9 8.7 90 395-484 987-1120(1202)
285 PF08631 SPO22: Meiosis protei 67.4 12 0.00026 36.2 5.8 62 409-477 3-65 (278)
286 PF10255 Paf67: RNA polymerase 65.3 5.6 0.00012 40.5 3.1 56 422-477 138-193 (404)
287 PF04781 DUF627: Protein of un 64.8 15 0.00032 30.1 4.8 25 405-429 2-26 (111)
288 PF04184 ST7: ST7 protein; In 64.6 18 0.00039 37.6 6.4 104 389-492 181-305 (539)
289 PRK04841 transcriptional regul 64.1 22 0.00048 40.6 8.1 61 408-477 500-560 (903)
290 KOG1585 Protein required for f 63.0 26 0.00056 33.0 6.6 30 403-432 114-143 (308)
291 PF10516 SHNi-TPR: SHNi-TPR; 62.3 11 0.00023 24.4 2.9 27 403-429 5-31 (38)
292 PF15469 Sec5: Exocyst complex 62.0 25 0.00055 31.5 6.5 80 405-487 92-178 (182)
293 KOG4642 Chaperone-dependent E3 61.7 17 0.00037 34.1 5.2 61 402-477 47-107 (284)
294 PF11207 DUF2989: Protein of u 61.0 19 0.00042 32.8 5.4 50 408-468 149-198 (203)
295 smart00101 14_3_3 14-3-3 homol 59.9 27 0.00058 33.1 6.4 55 415-476 144-199 (244)
296 PF04781 DUF627: Protein of un 59.3 24 0.00051 28.9 5.1 53 411-478 56-108 (111)
297 KOG0495 HAT repeat protein [RN 59.2 13 0.00028 39.7 4.5 88 406-493 591-696 (913)
298 KOG2610 Uncharacterized conser 58.5 11 0.00023 37.1 3.5 88 400-487 104-214 (491)
299 PRK04841 transcriptional regul 58.4 30 0.00064 39.6 7.8 68 404-480 696-763 (903)
300 PF04184 ST7: ST7 protein; In 57.5 27 0.00059 36.3 6.3 58 403-473 263-320 (539)
301 COG3629 DnrI DNA-binding trans 56.2 20 0.00043 34.6 4.9 56 438-493 143-198 (280)
302 PF14561 TPR_20: Tetratricopep 55.9 23 0.00049 27.8 4.4 40 444-483 18-57 (90)
303 KOG3824 Huntingtin interacting 55.8 12 0.00026 36.3 3.2 47 446-492 114-160 (472)
304 COG2976 Uncharacterized protei 55.3 39 0.00085 30.7 6.2 62 401-474 91-152 (207)
305 PF09670 Cas_Cas02710: CRISPR- 50.8 62 0.0013 32.9 7.8 68 397-477 129-198 (379)
306 COG3071 HemY Uncharacterized e 49.8 48 0.001 33.3 6.5 100 394-493 79-198 (400)
307 PLN03081 pentatricopeptide (PP 48.4 29 0.00063 38.4 5.4 43 448-490 494-536 (697)
308 PF01535 PPR: PPR repeat; Int 47.9 28 0.00061 20.2 3.1 28 450-477 2-29 (31)
309 KOG0276 Vesicle coat complex C 45.7 58 0.0013 34.7 6.5 76 399-474 666-747 (794)
310 KOG4507 Uncharacterized conser 45.3 26 0.00056 37.1 4.0 35 449-483 677-711 (886)
311 PF08969 USP8_dimer: USP8 dime 44.2 61 0.0013 26.6 5.5 44 387-430 26-69 (115)
312 KOG0495 HAT repeat protein [RN 44.1 49 0.0011 35.7 5.8 58 412-484 664-721 (913)
313 COG2912 Uncharacterized conser 44.1 22 0.00048 34.0 3.1 67 408-489 190-256 (269)
314 KOG2471 TPR repeat-containing 42.4 25 0.00054 36.4 3.3 53 439-492 500-552 (696)
315 KOG2114 Vacuolar assembly/sort 41.9 83 0.0018 34.9 7.2 34 398-431 367-400 (933)
316 cd02682 MIT_AAA_Arch MIT: doma 41.9 50 0.0011 24.9 4.1 36 448-483 6-48 (75)
317 PF10373 EST1_DNA_bind: Est1 D 41.6 44 0.00096 31.8 5.0 46 418-478 1-46 (278)
318 KOG4507 Uncharacterized conser 40.0 25 0.00054 37.2 2.9 72 410-495 618-689 (886)
319 PF02064 MAS20: MAS20 protein 39.3 61 0.0013 27.0 4.7 40 392-431 56-95 (121)
320 KOG1550 Extracellular protein 38.6 64 0.0014 34.7 6.0 71 400-492 332-406 (552)
321 COG3898 Uncharacterized membra 38.4 82 0.0018 31.9 6.1 76 409-492 198-280 (531)
322 KOG3783 Uncharacterized conser 38.0 46 0.00099 34.9 4.5 70 405-488 273-342 (546)
323 COG3118 Thioredoxin domain-con 37.0 61 0.0013 31.4 4.9 54 402-470 137-190 (304)
324 COG3947 Response regulator con 36.9 1.5E+02 0.0032 28.9 7.3 73 386-473 264-338 (361)
325 KOG1915 Cell cycle control pro 36.5 38 0.00083 35.0 3.6 62 411-487 85-146 (677)
326 PF09986 DUF2225: Uncharacteri 36.5 1.4E+02 0.003 27.6 7.1 63 408-478 86-155 (214)
327 KOG1310 WD40 repeat protein [G 36.1 47 0.001 34.8 4.2 38 444-481 441-478 (758)
328 PF10938 YfdX: YfdX protein; 35.7 85 0.0018 27.4 5.3 72 398-476 74-145 (155)
329 PF13812 PPR_3: Pentatricopept 35.1 71 0.0015 18.9 3.5 27 450-476 3-29 (34)
330 PF05843 Suf: Suppressor of fo 33.4 98 0.0021 29.9 5.9 55 412-481 49-103 (280)
331 PF07219 HemY_N: HemY protein 33.3 1.1E+02 0.0025 24.6 5.4 35 394-428 54-88 (108)
332 COG4105 ComL DNA uptake lipopr 33.0 1.6E+02 0.0035 28.0 6.9 80 416-495 133-217 (254)
333 PF11817 Foie-gras_1: Foie gra 32.9 1.1E+02 0.0025 28.8 6.2 53 416-477 155-207 (247)
334 PF04010 DUF357: Protein of un 32.8 1.1E+02 0.0023 23.2 4.7 39 391-429 27-65 (75)
335 cd00280 TRFH Telomeric Repeat 32.8 88 0.0019 28.2 4.8 38 446-484 109-146 (200)
336 TIGR00756 PPR pentatricopeptid 32.6 81 0.0018 18.4 3.5 27 450-476 2-28 (35)
337 PF02259 FAT: FAT domain; Int 32.2 1.5E+02 0.0033 29.1 7.3 72 394-480 247-341 (352)
338 PF09122 DUF1930: Domain of un 31.8 61 0.0013 23.3 2.9 24 328-351 34-57 (68)
339 PF01239 PPTA: Protein prenylt 31.7 33 0.00072 20.5 1.5 24 466-489 1-24 (31)
340 KOG2396 HAT (Half-A-TPR) repea 31.0 1.5E+02 0.0032 31.1 6.7 55 417-486 89-143 (568)
341 COG3071 HemY Uncharacterized e 30.9 1.3E+02 0.0027 30.5 6.1 61 401-477 330-390 (400)
342 PF04212 MIT: MIT (microtubule 30.7 88 0.0019 22.8 4.0 25 452-476 9-33 (69)
343 TIGR00985 3a0801s04tom mitocho 30.2 1.2E+02 0.0026 26.3 5.1 41 391-431 82-123 (148)
344 KOG2300 Uncharacterized conser 30.1 1.8E+02 0.0039 30.4 7.0 85 389-482 37-123 (629)
345 PF14853 Fis1_TPR_C: Fis1 C-te 30.1 1.4E+02 0.0029 20.8 4.5 24 405-428 7-30 (53)
346 COG4455 ImpE Protein of avirul 29.8 88 0.0019 29.1 4.4 64 405-483 7-70 (273)
347 KOG0985 Vesicle coat protein c 29.8 82 0.0018 35.9 4.9 17 313-329 319-335 (1666)
348 KOG0529 Protein geranylgeranyl 29.6 1.6E+02 0.0035 30.0 6.6 43 444-486 105-149 (421)
349 KOG1839 Uncharacterized protei 29.2 49 0.0011 38.4 3.3 73 397-477 930-1002(1236)
350 PF04910 Tcf25: Transcriptiona 28.6 2.1E+02 0.0045 28.9 7.4 83 399-482 40-138 (360)
351 KOG0546 HSP90 co-chaperone CPR 28.1 21 0.00045 35.4 0.2 39 444-482 305-343 (372)
352 smart00386 HAT HAT (Half-A-TPR 28.1 46 0.00099 19.3 1.7 29 462-490 1-29 (33)
353 PLN03077 Protein ECB2; Provisi 27.9 1E+02 0.0022 35.2 5.7 44 449-492 658-701 (857)
354 PF14863 Alkyl_sulf_dimr: Alky 27.8 1.6E+02 0.0035 25.2 5.6 49 400-456 71-119 (141)
355 COG3629 DnrI DNA-binding trans 27.5 1.8E+02 0.0038 28.2 6.4 64 398-476 152-215 (280)
356 PF06069 PerC: PerC transcript 27.3 3.1E+02 0.0067 21.6 8.0 26 405-430 6-31 (90)
357 KOG3617 WD40 and TPR repeat-co 26.9 3.9E+02 0.0084 30.1 9.1 72 403-474 1083-1171(1416)
358 KOG1585 Protein required for f 26.2 2.2E+02 0.0047 27.1 6.3 22 411-432 43-64 (308)
359 TIGR02710 CRISPR-associated pr 26.1 2.4E+02 0.0052 28.6 7.3 64 400-473 131-196 (380)
360 PHA02122 hypothetical protein 25.9 1.1E+02 0.0023 21.4 3.2 21 54-75 39-59 (65)
361 KOG2300 Uncharacterized conser 25.7 1.7E+02 0.0036 30.7 5.9 45 409-465 377-421 (629)
362 PRK00226 greA transcription el 24.9 68 0.0015 28.0 2.8 25 91-115 121-145 (157)
363 PF12854 PPR_1: PPR repeat 24.8 1.4E+02 0.003 18.3 3.5 26 448-473 7-32 (34)
364 KOG3617 WD40 and TPR repeat-co 24.5 1.8E+02 0.004 32.5 6.3 67 409-475 922-994 (1416)
365 PLN03077 Protein ECB2; Provisi 24.0 1.6E+02 0.0036 33.4 6.5 55 407-480 532-588 (857)
366 PF01272 GreA_GreB: Transcript 23.8 79 0.0017 23.8 2.7 24 92-115 42-65 (77)
367 PF07079 DUF1347: Protein of u 23.5 2.7E+02 0.0059 28.9 7.0 59 399-473 462-520 (549)
368 KOG1915 Cell cycle control pro 22.9 1.6E+02 0.0035 30.6 5.3 52 412-478 450-501 (677)
369 KOG4056 Translocase of outer m 22.7 1.9E+02 0.0042 24.6 4.8 43 389-431 71-113 (143)
370 COG5159 RPN6 26S proteasome re 22.6 1.8E+02 0.0038 28.3 5.2 57 403-466 7-63 (421)
371 KOG4563 Cell cycle-regulated h 21.9 2.4E+02 0.0051 28.4 6.0 38 394-431 36-73 (400)
372 cd02679 MIT_spastin MIT: domai 21.8 1.3E+02 0.0029 22.9 3.5 24 453-476 13-36 (79)
373 PLN03218 maturation of RBCL 1; 21.5 2.2E+02 0.0048 33.3 6.8 29 448-476 719-747 (1060)
374 PF12690 BsuPI: Intracellular 21.5 3.5E+02 0.0075 20.7 5.8 29 59-87 2-30 (82)
375 KOG0890 Protein kinase of the 21.3 2E+02 0.0044 36.0 6.4 37 453-489 1454-1490(2382)
376 PRK12450 foldase protein PrsA; 20.9 2.3E+02 0.0049 27.9 5.9 36 320-355 195-233 (309)
377 KOG1550 Extracellular protein 20.7 1E+02 0.0022 33.2 3.7 61 414-493 308-371 (552)
378 PF08424 NRDE-2: NRDE-2, neces 20.6 2.7E+02 0.0059 27.4 6.5 70 410-479 113-185 (321)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-56 Score=428.09 Aligned_cols=297 Identities=48% Similarity=0.761 Sum_probs=276.5
Q ss_pred ccccccCCCCCCeEEEEEEEEeCCCceeeec---cceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCC
Q 011003 162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238 (496)
Q Consensus 162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~ 238 (496)
+|+|+.+|..||.|.+||++++.+|+.|+++ ++..|.+|.+.++.||..++.+|+. |+.+.
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~-- 65 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS-- 65 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCC--
Confidence 6889999999999999999999999999987 4789999999999999999999987 33333
Q ss_pred CCCCCCCCCCceEEEEEEeeeecceeeeccCcceEEEEEecCCC-cCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCccc
Q 011003 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL 317 (496)
Q Consensus 239 ~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k~il~~G~g-~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~ 317 (496)
.+.||++++|.|+|+|+ |++++|+|+++|.| ..+|..|..|.+||.+.+.|+ +|+++ ...
T Consensus 66 ---pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~-----~~~ 126 (397)
T KOG0543|consen 66 ---PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR-----ELR 126 (397)
T ss_pred ---CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc-----ccc
Confidence 36789999999999998 89999999999999 799999999999999999998 66654 344
Q ss_pred EEEEcCc-cchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee-ccccccccChHHH
Q 011003 318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK 395 (496)
Q Consensus 318 ~~~~lg~-~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~-~~~~~~~~~~~e~ 395 (496)
|.|.+|+ ..++.||+.||+.|++||++.|+|+|+|+||+.+.. .+.|||+++|.|+|+|++|. .....|.|..+++
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8888888 589999999999999999999999999999966554 38899999999999999999 7888999999999
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
++.|.+.|++||.+||+|+|..|...|.+|+++|+++...++++.+.+..++..||+|+|+||+|+++|.+|+..|++||
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchhcccccccccc
Q 011003 476 ESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 476 ~~dp~~~Ka~~rrg~a~~~l 495 (496)
+++|+|+|||||||+||+.+
T Consensus 285 e~~~~N~KALyRrG~A~l~~ 304 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLAL 304 (397)
T ss_pred hcCCCchhHHHHHHHHHHhh
Confidence 99999999999999999875
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=276.15 Aligned_cols=316 Identities=40% Similarity=0.622 Sum_probs=239.2
Q ss_pred EcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCC
Q 011003 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (496)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~ 124 (496)
++|+|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++..|+. |..+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 89999999999999999999999998 66777
Q ss_pred CCCCCCCCceEEEEEEEEEeecceeccCccceeEeeecccc-ccCCCCCCeEEEEEEEEeCCCceeeecc-ceEEEecC-
Q 011003 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKD- 201 (496)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~~-~~~~~~g~- 201 (496)
++.||+++++.|+|+|+ |+.++++|++.|.| ..+|..+-.|.+||.+.+.++ +|+++. .+.|.+|.
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 88999999999999997 89999999999999 899999999999999999988 666653 46777888
Q ss_pred CCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeecceeeeccCcceEEEEEecCC
Q 011003 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (496)
Q Consensus 202 ~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~~~~d~~~d~~~~k~il~~G~ 281 (496)
..+|.||+.+|..|++||.+.|+|+|+|+||+.+.. .+.|||+++|.|+|+|+++....+.....
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~~----------- 199 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWKM----------- 199 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCccccccc-----------
Confidence 479999999999999999999999999999954432 48899999999999999987222111100
Q ss_pred CcCCCCCCCeEEEEEEEE-EcCCcEEEEcCCCCCcccEEEEcCcc-chhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003 282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (496)
Q Consensus 282 g~~~p~~~~~V~v~y~~~-~~~g~~~~~~~~~~~~~~~~~~lg~~-~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~ 359 (496)
....++.+..+ -+.|+.+ |.-|.- ....-.+.|+.-|. ...
T Consensus 200 -------~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~----------~~~------- 242 (397)
T KOG0543|consen 200 -------FAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSFLE----------YRR------- 242 (397)
T ss_pred -------chHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHHhh----------ccc-------
Confidence 00000000000 0112221 111110 11222222222110 000
Q ss_pred cccccCCCCCCeEEEEEEEeeeeccccccccChHHHHHHH---hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCC
Q 011003 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAA---GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436 (496)
Q Consensus 360 ~~~~~~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a---~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~ 436 (496)
.++. .+++...+ ..+..-+-.+.|.++|..|+..-.++|.+
T Consensus 243 ---------------------------~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-------- 286 (397)
T KOG0543|consen 243 ---------------------------SFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-------- 286 (397)
T ss_pred ---------------------------cCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--------
Confidence 0010 11222222 22334555667899999999999999998
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 437 ~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
++...+++.-++.|++.+++|+.|+.++.+|++++|+|
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 55568899999999999999999999999999999999
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-31 Score=224.90 Aligned_cols=176 Identities=28% Similarity=0.473 Sum_probs=147.7
Q ss_pred EEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeec---ceeeeccCcceE
Q 011003 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK---TVSEITDDKKVI 273 (496)
Q Consensus 197 ~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~~~~~~~~~i~~~~~l~~ev~l~~~~---~~~d~~~d~~~~ 273 (496)
+++|.+.++++++.++.+|+.||++.+++||+++||..+.. ....+++.+.++... ..+.+.....+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 46788899999999999999999999999999999954432 233456666666543 333444556666
Q ss_pred EEEEecCC-CcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCC
Q 011003 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (496)
Q Consensus 274 k~il~~G~-g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~ 352 (496)
-.++++-. +..+...||.+.+||++.+.||++||+++. +++|++|.+|.+++|+||+++|.+||+||++.++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 66666522 667889999999999999999999999876 789999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCeEEEEEEEeeeecccc
Q 011003 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (496)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~~~~ 386 (496)
|||++|.+ +.||++++|+|+|||+++.+.+.
T Consensus 150 gYG~~G~~---~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAP---PKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCC---CCCCCCeeEEEEEEEEEeecCCC
Confidence 99999986 45999999999999999987543
No 4
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.7e-31 Score=234.03 Aligned_cols=223 Identities=22% Similarity=0.302 Sum_probs=189.1
Q ss_pred CcceEEEEEecCCCcCCC--CCCCeEEEEEEEEEcC--CcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEE
Q 011003 269 DKKVIKKILKEGDGFERP--NEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (496)
Q Consensus 269 d~~~~k~il~~G~g~~~p--~~~~~V~v~y~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~ 344 (496)
..++.|+|+..|+| +-| ..|..|.+||.....+ ++++|+++. -++|+.+++|...-.+.||.+|.+|+++|.+
T Consensus 9 ~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 9 VEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred chhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 45789999999999 555 6699999999988764 678988865 7899999999999999999999999999999
Q ss_pred EEEEcCCC--------------ccCCc--------------------cccccccCCCCCCeEEEEEEEeeeec----ccc
Q 011003 345 LLTIAPEY--------------AFGSA--------------------ESQQELAVVPPNSTVHYEVELVSFEK----EKE 386 (496)
Q Consensus 345 ~v~i~~~~--------------~yg~~--------------------~~~~~~~~ip~~~~l~f~v~l~~~~~----~~~ 386 (496)
.|+|.... +-|.. |..........-++|+|.|+|+++.. ..+
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 99986421 11111 00000011123378999999999986 467
Q ss_pred ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC---CCCChHHHHHHHHHHHHhhhHHHHHHHhccC
Q 011003 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (496)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~ 463 (496)
.|+|+.+||+.....++++||.+|+.|+|.+|..+|..|+-.+..- ....++++.+++.....+++|.|+|+++.++
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 8999999999999999999999999999999999999999887543 4556789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 464 YKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 464 ~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
|.++++.|+.+|..+|.|+|||||||+|+.+
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999865
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=203.92 Aligned_cols=169 Identities=32% Similarity=0.470 Sum_probs=139.2
Q ss_pred EEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCCCceEEEEEEEEEeecc---eeccCccceeEeee
Q 011003 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK---DICKDGGIIKKILK 161 (496)
Q Consensus 85 ~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~---~~~~d~~~~k~i~~ 161 (496)
|.+|.+++++|.+.++.||+.|+++.+.+||+++||..+.. .-..++|.+.++....+. ....+..+...+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 45788899999999999999999999999999999955432 112456666666554332 22234445555555
Q ss_pred cc-ccccCCCCCCeEEEEEEEEeCCCceeeec----cceEEEecCCCCcchHHHHHhccccCcEEEEEecCCCccCCCCC
Q 011003 162 EG-EKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (496)
Q Consensus 162 ~g-~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~ge~~~v~vp~~~~~g~~~~ 236 (496)
+- ....+.+.||.+.+||++.+.||++|++| +|+.|.+|.+++++||+++|.+||+||++.++|||++|||++|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 53 25568889999999999999999999987 58999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCceEEEEEEeeeecc
Q 011003 237 SASGNEGAVPPNATLQIALELVSWKT 262 (496)
Q Consensus 237 ~~~~~~~~i~~~~~l~~ev~l~~~~~ 262 (496)
+ +.||++++|+|+|+|+.+..
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 5 56999999999999998864
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-27 Score=177.59 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.4
Q ss_pred CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCc
Q 011003 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (496)
Q Consensus 38 g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ 117 (496)
|+.++++.+|+|...|++||.|++||++.+.||+.||||.+++.|+.|.+|.+++|+||++++..|.+|+++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (496)
Q Consensus 118 ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (496)
|||..+.+..||+|++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999986
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.6e-27 Score=204.35 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.5
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (496)
Q Consensus 33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ 112 (496)
..+++|++|++++.|+| ..|..+|.|.+||++++.||++||||+++++|+.|.+| ++|+||.++|.+|++|++++++
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 66899999999999999 89999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (496)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (496)
|||++|||..+.++.||||++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999987779999999999999986
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=169.16 Aligned_cols=106 Identities=38% Similarity=0.638 Sum_probs=100.3
Q ss_pred ceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcC
Q 011003 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP 350 (496)
Q Consensus 271 ~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~ 350 (496)
++.+.++.+|+|...|..|++|++||.+.+.||+.||++.. ++.||.|.+|.+++|+||++++..|.+||++.++|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d--r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD--RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc--cCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence 36788999999999999999999999999999999999865 7899999999999999999999999999999999999
Q ss_pred CCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (496)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~ 381 (496)
++|||..|.+ ..||||++|+|+|||+++
T Consensus 80 d~aYG~~G~p---~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHP---GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCC---CccCCCcEEEEEEEEEec
Confidence 9999999965 689999999999999986
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-23 Score=182.64 Aligned_cols=107 Identities=41% Similarity=0.576 Sum_probs=100.3
Q ss_pred ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (496)
Q Consensus 267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v 346 (496)
+..+++.+++++.|+| ..|..+++|++||.|++.||++||+++. +++|+.|.+| ++|+||.++|++|++|++|++
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~--rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l 172 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYD--RGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKL 172 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccc--cCCCceeecC--CeeehHHHHHhhCCCCceEEE
Confidence 4577999999999999 8999999999999999999999999865 8999999999 999999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (496)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~ 381 (496)
+|||++|||..+.+ ..|||+++|+|+|+|+++
T Consensus 173 ~IP~~laYG~~g~~---g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 173 TIPPELAYGERGVP---GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred EeCchhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence 99999999999865 459999999999999986
No 10
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=1.9e-22 Score=184.20 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.6
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (496)
Q Consensus 33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ 112 (496)
..+++|++|+++++|+| ..|..+|.|.|||++++.||++|++|+.+++|+.|.+| ++++||+++|.+|++|+++.|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 66899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (496)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (496)
|||++|||..+.++.||++++|+|+|+|+++
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999987
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.87 E-value=1.7e-21 Score=173.69 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.6
Q ss_pred eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (496)
Q Consensus 33 ~~~~~g~~~~~l~~--G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~ 110 (496)
..+++|++|.+++. |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 55889999999976 666 67899999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCceEEEEEEEEEe
Q 011003 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (496)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (496)
|+|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999985
No 12
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=175.34 Aligned_cols=108 Identities=49% Similarity=0.872 Sum_probs=103.0
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEEeecCCCccEE-EEeCCCcccHHHHHHHccCcCCcEEE
Q 011003 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV 110 (496)
Q Consensus 33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~-dg~~~~~t~~~~~p~~-~~~G~~~~~~gle~~l~~m~~Ge~~~ 110 (496)
.+.++||.|+.++.|+| ..+..|+.|.+||.+++. +|++|++++.. .|+. |.+|.+++|+||+.+|.||++|++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 56899999999999999 899999999999999999 99999999984 7888 99999999999999999999999999
Q ss_pred EEecCCcccCCCCCCCCCCCCCceEEEEEEEEE
Q 011003 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (496)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (496)
|+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999987 89999999999999876
No 13
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=7e-20 Score=173.43 Aligned_cols=109 Identities=50% Similarity=0.883 Sum_probs=102.8
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEE
Q 011003 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (496)
Q Consensus 33 ~~~~~g~~~~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ 112 (496)
..+++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ +++|||+++|.+|++|++++|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 55899999999999999 78999999999999999999999999988899999996 6999999999999999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCceEEEEEEEEEee
Q 011003 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (496)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~ 145 (496)
||++++||..+.+ .||+|++|+|+|+|+++.+
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence 9999999999865 7999999999999999875
No 14
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.80 E-value=4.8e-19 Score=161.89 Aligned_cols=107 Identities=34% Similarity=0.474 Sum_probs=98.3
Q ss_pred ccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEE
Q 011003 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (496)
Q Consensus 267 ~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v 346 (496)
+.++++.++++++|+| ..|..++.|.|||.+++.||++|++++. .+.|+.|.++ .+++||+++|.+|++|+++.|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~--~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~ 173 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVA--RGEPAEFPVN--GVIPGWIEALTLMPVGSKWEL 173 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccC--CCCCeEEEee--chhhHHHHHHcCCCCCCEEEE
Confidence 3467899999999999 7899999999999999999999998754 5789999986 699999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCCeEEEEEEEeee
Q 011003 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (496)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~ 381 (496)
+||+++|||+.+.+ +.|||+++|+|+|+|+++
T Consensus 174 ~IP~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 174 TIPHELAYGERGAG---ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EECHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence 99999999998864 579999999999999987
No 15
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-19 Score=161.27 Aligned_cols=109 Identities=33% Similarity=0.499 Sum_probs=101.1
Q ss_pred eccCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEc-CCcEEEEcCCCCCcccEE-EEcCccchhhHHHHHHhccccCcE
Q 011003 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFE-FKTDEEQVIDGLDRAVITMKKNEV 343 (496)
Q Consensus 266 ~~~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~-~g~~~~~~~~~~~~~~~~-~~lg~~~~~~gle~~l~~M~~Ge~ 343 (496)
.+..++++++.++-|+| ..|..|++|.+||.+++. +|++||++ ..+.|+. |.+|.+++|+||+.++.+|++|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~---~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSN---FGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecc---cCCCCccccccCCCCCCchHHHhhhhhccCCe
Confidence 45678999999999999 999999999999999998 89999988 3588888 999999999999999999999999
Q ss_pred EEEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (496)
Q Consensus 344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~ 382 (496)
++|+|||.+|||..+.. .|||+++|+|+|+|+.+.
T Consensus 192 RrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred eEEEeCccccccccCcC----cCCCCCcEEEEEEEEecC
Confidence 99999999999998875 699999999999999863
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.80 E-value=6.1e-19 Score=142.29 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=87.0
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCC-CCC
Q 011003 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (496)
Q Consensus 49 G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~-~~~ 127 (496)
|.++|+.||.|.+||++++.+|+++++++..+.|+.|.+|.+++++||+++|.+|++|++++|.||++++||..+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4457999999999999999999999999877899999999999999999999999999999999999999999887 456
Q ss_pred CCCCCceEEEEEEE
Q 011003 128 IPPNATLQFDVELL 141 (496)
Q Consensus 128 ip~~~~l~~~v~l~ 141 (496)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999986
No 17
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=156.17 Aligned_cols=136 Identities=26% Similarity=0.361 Sum_probs=102.8
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (496)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (496)
++++||.|++||++++.||++||+|.....|+.|++|.+++++|||+||.||.+|++..|.|||+.|||.++.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~------- 74 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP------- 74 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence 5789999999999999999999999886789999999999999999999999999999999999999999884
Q ss_pred CceEEEEEEEEEeecceeccCccceeEeeecc-----ccccCCCCCCeEEEEEEEEeCCCceeeeccceEEEe
Q 011003 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV 199 (496)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~i~~~g-----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~ 199 (496)
.++-.+.+-.+.... +-.+..++...+ .+..+...++.|++||||+||+.++.|+-+-+...-
T Consensus 75 -~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~ 142 (174)
T COG1047 75 -DLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE 142 (174)
T ss_pred -HHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec
Confidence 333333332222111 111222222222 223344456899999999999999999876554443
No 18
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.80 E-value=2.2e-19 Score=157.05 Aligned_cols=126 Identities=24% Similarity=0.384 Sum_probs=97.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (496)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (496)
.++.|+.|.+||++++.||++|++|+..++|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||.++.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~------- 76 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP------- 76 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence 5789999999999999999999999877799999999999999999999999999999999999999998873
Q ss_pred CceEEEEEEEEEeeccee---------ccCcc-ceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeecc
Q 011003 132 ATLQFDVELLSWTSVKDI---------CKDGG-IIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (496)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~---------~~d~~-~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (496)
.++..+....+...... ..++. +..+|+. ..++.|++|+||+|||.++.|.-+
T Consensus 77 -~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~--------i~~~~v~vD~NHPLAGk~L~f~v~ 139 (156)
T PRK15095 77 -DLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIRE--------INGDSITVDFNHPLAGQTVHFDIE 139 (156)
T ss_pred -HHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEEE
Confidence 33444433333210000 01221 1223333 345899999999999999988754
No 19
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.79 E-value=1.1e-18 Score=155.72 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=97.5
Q ss_pred ccCcceEEEEEec--CCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEE
Q 011003 267 TDDKKVIKKILKE--GDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (496)
Q Consensus 267 ~~d~~~~k~il~~--G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~ 344 (496)
....++.++++.. |+| ..|..||.|.+||.+++.||++|++++. ..|+.|.+|.+++++||+++|.+|++||++
T Consensus 66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~---~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEE---LGPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCC---CCCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 3456888888866 555 7899999999999999999999998753 459999999999999999999999999999
Q ss_pred EEEEcCCCccCCccccccccCCCCCCeEEEEEEEeeee
Q 011003 345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (496)
Q Consensus 345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~ 382 (496)
+|++|+++|||..+.. ..|||+++|+|+|+|+++.
T Consensus 142 ~~~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 142 TFLFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence 9999999999998764 5799999999999999985
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.76 E-value=6.5e-18 Score=136.30 Aligned_cols=94 Identities=39% Similarity=0.668 Sum_probs=86.2
Q ss_pred CcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccc
Q 011003 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (496)
Q Consensus 282 g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~ 361 (496)
|+.+|..||.|.|||.+++.+|++|++++. ...|+.|.+|.+.+++||+.+|.+|++||++.|+||++++||+.+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 446799999999999999999999998854 688999999999999999999999999999999999999999988743
Q ss_pred cccCCCCCCeEEEEEEEe
Q 011003 362 ELAVVPPNSTVHYEVELV 379 (496)
Q Consensus 362 ~~~~ip~~~~l~f~v~l~ 379 (496)
..||++++|+|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 4599999999999986
No 21
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.75 E-value=5.4e-18 Score=151.92 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=97.4
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (496)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (496)
+++++++|+|+|++++.||++|++|+. ..|+.|++|.++++|+||++|.+|++|++++|.|||+.|||.++.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~------- 73 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE------- 73 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence 468999999999999999999999986 489999999999999999999999999999999999999999884
Q ss_pred CceEEEEEEEEEeeccee---------ccCccceeEeeeccccccCCCCCCeEEEEEEEEeCCCceeeeccc
Q 011003 132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (496)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~---------~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~ 194 (496)
.++..+....+.....+ ..++.+..+|++. .++.|+||||||||+.++.|+-+.
T Consensus 74 -~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~veV 136 (196)
T PRK10737 74 -NLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFNVEV 136 (196)
T ss_pred -HHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEEEEE
Confidence 33443333222211111 1222233333333 448999999999999999887543
No 22
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=7.6e-17 Score=152.78 Aligned_cols=107 Identities=33% Similarity=0.517 Sum_probs=97.4
Q ss_pred cCcceEEEEEecCCCcCCCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEE
Q 011003 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (496)
Q Consensus 268 ~d~~~~k~il~~G~g~~~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~ 347 (496)
.+++++++|+++|+| ..|..+|.|.|||.+++.||++|++++. .+.|+.|.++ .+++||+.+|.+|++|+++.|+
T Consensus 144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeecccc--CCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 467899999999999 7899999999999999999999998754 5678888875 6999999999999999999999
Q ss_pred EcCCCccCCccccccccCCCCCCeEEEEEEEeeeec
Q 011003 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (496)
Q Consensus 348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~v~l~~~~~ 383 (496)
||++++||..+. ..|||+++|+|+|+|+++..
T Consensus 219 IP~~laYG~~g~----~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 219 IPPELAYGKAGV----PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred ECchhhCCCCCC----CCCCCCCcEEEEEEEEEecc
Confidence 999999999875 35999999999999999975
No 23
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=5.9e-17 Score=141.55 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=83.4
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
.+..+.++|.+||.+|+.|+|.+|..+|+.||.+++... ...+..||+|||+|.+|++.|..||.+|.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 378899999999999999999999999999999986542 4678999999999999999999999999999
Q ss_pred hcccCCCcchhccccccccc
Q 011003 475 CESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 475 l~~dp~~~Ka~~rrg~a~~~ 494 (496)
|+++|.+.||+-|||.||-.
T Consensus 161 iel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HhcCchhHHHHHHHHHHHHh
Confidence 99999999999999999854
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.5e-17 Score=157.88 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=88.1
Q ss_pred ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (496)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~ 466 (496)
.-.++.++++..|..+|.+||.+|+.|+|.+||.+|++||.+++.. ...|+|||+||..+|+|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence 3467888999999999999999999999999999999999986542 7889999999999999999
Q ss_pred HHHHHHHHhcccCCCcchhccccccccccC
Q 011003 467 AEKLCTKKCESSVQKGSGIHSDGRFRFGRV 496 (496)
Q Consensus 467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l~ 496 (496)
.+++|++||+++|+++|||||||.|+-+|.
T Consensus 168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 168 VIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998763
No 25
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.3e-16 Score=147.01 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=84.1
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 470 (496)
++++-...|+++|.+||.+++.++|.+|+.+|++||++ .+..+.+|+|||++|++|++|..|++|
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---------------~P~nAVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL---------------DPTNAVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------------CCCcchHHHHHHHHHHHhcchHHHHHH
Confidence 33377889999999999999999999999999999999 445599999999999999999999999
Q ss_pred HHHHhcccCCCcchhcccccccccc
Q 011003 471 CTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 471 ~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
|..||.+||++.|||-|.|.||+.+
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999876
No 26
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-15 Score=139.58 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=81.8
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.|..+|++||.+||.++|+.|..+|+++|+.=+.+ ..+.+.||+|||+|++-+++|..||.||.+||.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-----------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-----------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-----------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999975554 567799999999999999999999999999999
Q ss_pred ccCCCcchhcccccccccc
Q 011003 477 SSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~~l 495 (496)
++|.|.||+||-|+|++.|
T Consensus 148 ~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred cCcchhhhhhhhhHHHHHH
Confidence 9999999999999998765
No 27
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.48 E-value=1.9e-13 Score=119.62 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcc
Q 011003 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358 (496)
Q Consensus 285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~ 358 (496)
.+..++.|.+||.+++.||++|++++. .+.|+.|.+|.+++++||+.+|.+|++||++.|.|||+.|||..+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~--~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRN--NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCC--CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 467899999999999999999999853 478999999999999999999999999999999999999999875
No 28
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.3e-14 Score=142.54 Aligned_cols=84 Identities=32% Similarity=0.361 Sum_probs=78.1
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.+.+.|.+||.+|+.|+|..|+..|++||+. ++....+|+|||+||+|++++..|+.||+++|+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45788899999999999999999999999998 455599999999999999999999999999999
Q ss_pred ccCCCcchhcccccccccc
Q 011003 477 SSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~~l 495 (496)
+||+++|+|+|+|.|+..+
T Consensus 421 L~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred cCchHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 29
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.44 E-value=2.2e-14 Score=134.96 Aligned_cols=89 Identities=27% Similarity=0.315 Sum_probs=82.0
Q ss_pred hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (496)
Q Consensus 392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~ 471 (496)
.++.+..+.++|++||.+||+|+|.+||.+|++++...+ ....+|.|||++|+|++.|..|..||
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P---------------~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP---------------HNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCC---------------CCccchhhHHHHHHHHHHHHHHHHhH
Confidence 456678889999999999999999999999999999844 34788999999999999999999999
Q ss_pred HHHhcccCCCcchhcccccccccc
Q 011003 472 TKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 472 ~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
+.|+.+|..++|||-||+.|+..|
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766
No 30
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.9e-12 Score=110.59 Aligned_cols=72 Identities=28% Similarity=0.398 Sum_probs=66.3
Q ss_pred CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003 286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (496)
Q Consensus 286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~ 359 (496)
...++.|+++|.+++.||++||+|.. ...|+.|.+|.+++++|||+||.+|.+||+..|.|||+.|||....
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e--~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~ 74 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDE--NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP 74 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccc--cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence 46789999999999999999998733 4789999999999999999999999999999999999999999753
No 31
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.34 E-value=5.2e-12 Score=113.48 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=65.8
Q ss_pred CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccc
Q 011003 286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (496)
Q Consensus 286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~ 359 (496)
...++.|+|+|++++.+|++|+++. ...|+.|.+|.++++|+||.+|.+|.+|++..|.|||+.|||....
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~---~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecC---CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 4678999999999999999999873 4789999999999999999999999999999999999999999753
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.33 E-value=1.5e-12 Score=141.03 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=99.7
Q ss_pred CCCCCCeEEEEEEEeeeeccccccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHH
Q 011003 365 VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444 (496)
Q Consensus 365 ~ip~~~~l~f~v~l~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~ 444 (496)
..|+...+....++..+. ....|.++.+++...+..+|+.||.+|+.|+|.+|+..|++||++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------- 159 (615)
T ss_pred CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence 356666677766666554 456799999999999999999999999999999999999999997431
Q ss_pred HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
..+|+|+|.||+++++|.+|+.+|++||+++|++.++|+|+|.+|..+
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 346999999999999999999999999999999999999999998765
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-12 Score=124.75 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=83.0
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
-..+..+.+|++||.+|++|+|..|.++|+.||.+-++. ....+.||.|||.+..++++..+||.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 345778899999999999999999999999999985443 556699999999999999999999999999
Q ss_pred HhcccCCCcchhcccccccccc
Q 011003 474 KCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 474 al~~dp~~~Ka~~rrg~a~~~l 495 (496)
|+++||..+|||.|||+||+.|
T Consensus 313 Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.1e-12 Score=116.36 Aligned_cols=83 Identities=27% Similarity=0.362 Sum_probs=78.1
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
..++++|++||.+|..++|..|+.+|.+||.. ++.-++.|.|||+||+|+++|..+..+|.+||+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---------------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc---------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 45789999999999999999999999999998 777799999999999999999999999999999
Q ss_pred ccCCCcchhccccccccc
Q 011003 477 SSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~~ 494 (496)
++|+.+|++|-.|++++.
T Consensus 73 l~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred cChHHHHHHHHHHHHHHh
Confidence 999999999999987753
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.3e-12 Score=125.94 Aligned_cols=83 Identities=25% Similarity=0.297 Sum_probs=78.1
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+|++||.+|..|+|..|+.+|+.||.+ .+....+|+||++||.++++|.+|+.|+.++.+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc---------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999998 44468999999999999999999999999999999
Q ss_pred CCCcchhccccccccccC
Q 011003 479 VQKGSGIHSDGRFRFGRV 496 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~l~ 496 (496)
|+|+|+|.|+|-|+++|.
T Consensus 67 p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred CchhhHHHHhHHHHHhcc
Confidence 999999999999999874
No 36
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.10 E-value=1.7e-11 Score=121.48 Aligned_cols=83 Identities=19% Similarity=0.134 Sum_probs=78.0
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.++.+|.++|.+|+.+.|..|+..|+|||++ ++..+.++.|||++|+|.++|..|+.||++||++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 5778999999999999999999999999998 5556889999999999999999999999999999
Q ss_pred cCCCcchhcccccccccc
Q 011003 478 SVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 478 dp~~~Ka~~rrg~a~~~l 495 (496)
+|...|||||||.|++.+
T Consensus 68 dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred CchhhheeeeccHHHHhH
Confidence 999999999999988765
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=6.6e-10 Score=83.74 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=61.2
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCES 477 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~ 477 (496)
+..+...|+.++..++|.+|+..|++|+++ ++....++.|||.||++++ +|.+|+.++++||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567889999999999999999999999998 4455889999999999999 799999999999999
Q ss_pred cC
Q 011003 478 SV 479 (496)
Q Consensus 478 dp 479 (496)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=8.3e-10 Score=111.01 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=74.8
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..++.+|+.+|..++|..|+..|.+||++-+. ...+|.|||.||+++++|.+|+.+|++||+++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------NAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 356889999999999999999999999998433 36789999999999999999999999999999
Q ss_pred CCCcchhcccccccccc
Q 011003 479 VQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~l 495 (496)
|++..+||++|.+|+.+
T Consensus 67 P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 67 PSLAKAYLRKGTACMKL 83 (356)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998765
No 39
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.78 E-value=2.1e-08 Score=103.03 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=86.3
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCC
Q 011003 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (496)
Q Consensus 51 ~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~ 130 (496)
+.++.||.|.++|+++. +|+.++++.. .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 35789999999999976 8988888654 78999999999999999999999999999999999889987664 5
Q ss_pred CCceEEEEEEEEEeecceeccCccceeEe
Q 011003 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (496)
Q Consensus 131 ~~~l~~~v~l~~~~~~~~~~~d~~~~k~i 159 (496)
|.++.|.|++.++........+..+.+.+
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 78999999999998766555566666653
No 40
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-09 Score=103.68 Aligned_cols=105 Identities=24% Similarity=0.259 Sum_probs=90.0
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCCh---HH-HHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---EE-KKQAKALKVACNLNNAACKLKLKDYKQ 466 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~N~a~~~~kl~~~~~ 466 (496)
+....++.++.+|+.||..|++++|..|..+|.+++++++....... ++ ...+...+..++.|+|+|-+|++.|..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 34456788889999999999999999999999999999875222111 12 345788889999999999999999999
Q ss_pred HHHHHHHHhcccCCCcchhcccccccccc
Q 011003 467 AEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 467 Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
|+..|..+|+.++++.||||||+++++.+
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~ 322 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLL 322 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhh
Confidence 99999999999999999999999998765
No 41
>PRK01490 tig trigger factor; Provisional
Probab=98.68 E-value=6.6e-08 Score=100.18 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCCCCCCCCCCCC
Q 011003 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (496)
Q Consensus 52 ~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (496)
.++.||.|.++|+++. ||..++++.. .++.|.+|.+++++||+++|.||++|+++.|.+++...|+.... +|
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 5799999999999997 8888887654 68999999999999999999999999999999999888977664 56
Q ss_pred CceEEEEEEEEEeecceeccCccceeE
Q 011003 132 ATLQFDVELLSWTSVKDICKDGGIIKK 158 (496)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~~~d~~~~k~ 158 (496)
.++.|.|+|.++........+..+.+.
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~ 255 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKK 255 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 899999999999865555555555553
No 42
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-09 Score=100.52 Aligned_cols=90 Identities=22% Similarity=0.213 Sum_probs=84.9
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 470 (496)
..+++++.+...|.++..++..|.+..|+..|.+||.+ ++-.+.+|.+|+.+++|++++..||+|
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l---------------np~~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL---------------NPPLAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc---------------CCchhhhcccccceeeeccCCchhhhh
Confidence 45688999999999999999999999999999999998 666799999999999999999999999
Q ss_pred HHHHhcccCCCcchhcccccccccc
Q 011003 471 CTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 471 ~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
|+.||+++|+..|.|-.|++|++.|
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHh
Confidence 9999999999999999999998876
No 43
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.65 E-value=5.4e-08 Score=84.06 Aligned_cols=83 Identities=10% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
..+.+-.-|..++..|+|++|.+.|+-...+ ++.....|.|+++|+-.+++|.+||..+.+|+.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3466778899999999999999999999998 6667999999999999999999999999999999
Q ss_pred cCCCcchhcccccccccc
Q 011003 478 SVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 478 dp~~~Ka~~rrg~a~~~l 495 (496)
+|+++.++|..|.|++.+
T Consensus 99 ~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 99 KIDAPQAPWAAAECYLAC 116 (157)
T ss_pred CCCCchHHHHHHHHHHHc
Confidence 999999999999999875
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=5.7e-08 Score=84.64 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=59.3
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+...|..++..|+|.+|+..|.+++.. ++.....+.|+|.++.++|+|.+|+..++++++++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345688889999999999999999987 33446667777777777777777777777777777777
Q ss_pred cchhcccccccccc
Q 011003 482 GSGIHSDGRFRFGR 495 (496)
Q Consensus 482 ~Ka~~rrg~a~~~l 495 (496)
+.+|+++|.++..+
T Consensus 92 ~~a~~~lg~~l~~~ 105 (144)
T PRK15359 92 PEPVYQTGVCLKMM 105 (144)
T ss_pred cHHHHHHHHHHHHc
Confidence 77777777766543
No 45
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-07 Score=96.45 Aligned_cols=108 Identities=25% Similarity=0.423 Sum_probs=88.9
Q ss_pred EEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEEEEecCCcccCC
Q 011003 42 KLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGE 121 (496)
Q Consensus 42 ~~l~~G~G~~~~~~gd~V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~i~ip~~~ayg~ 121 (496)
.++.+=++ . ++.||.|+|+|.++. ||..|..... ..+.|.+|+++++|||+.+|.||+.|+...|.+.....|..
T Consensus 149 a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a 223 (441)
T COG0544 149 ATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHA 223 (441)
T ss_pred Cccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccch
Confidence 34444444 3 899999999999965 8998888654 67999999999999999999999999999998888888887
Q ss_pred CCCCCCCCCCCceEEEEEEEEEeecceeccCccceeEe
Q 011003 122 SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI 159 (496)
Q Consensus 122 ~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~~~k~i 159 (496)
... +|....|.|.|..+........|..+.+.+
T Consensus 224 ~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~ 256 (441)
T COG0544 224 EEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKL 256 (441)
T ss_pred hHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence 775 568999999999998777666666665544
No 46
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.9e-08 Score=94.41 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=82.7
Q ss_pred hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (496)
Q Consensus 392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~ 471 (496)
..+-...++..+++||.++++.+|..|+..|+.|+++++.+ +..|.|||+|++.+++|.+|+-++
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccch
Confidence 34567889999999999999999999999999999997653 889999999999999999999999
Q ss_pred HHHhcccCCCcchhcccccccccc
Q 011003 472 TKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 472 ~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
.+.++++|...|++.|-++|+.++
T Consensus 107 r~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 107 RQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hhheecCCCccccccchhhhhhhh
Confidence 999999999999999999999875
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.51 E-value=1.9e-07 Score=69.30 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=57.2
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
..|..+++.|+|.+|+..|+++++. .+....++.+++.|++.+|+|.+|+..++++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4688999999999999999999998 444588999999999999999999999999999999974
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=1e-07 Score=83.03 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=72.1
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
...+...|..+.+.|+|++|+..|.+|+.+- +.....+.|++.|+.++|++.+|+..+++||+++
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLD---------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556779999999999999999999999983 3448899999999999999999999999999999
Q ss_pred CCCcchhcccccccc
Q 011003 479 VQKGSGIHSDGRFRF 493 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~ 493 (496)
|+++.++..||.++.
T Consensus 123 p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 123 YADASWSEIRQNAQI 137 (144)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999987754
No 49
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.45 E-value=1.7e-06 Score=88.93 Aligned_cols=87 Identities=17% Similarity=0.340 Sum_probs=75.1
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcccccccc
Q 011003 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA 364 (496)
Q Consensus 285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~ 364 (496)
.+..||.|.++|.+.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|+++.|.++....|+....
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~----~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGG----KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCC----CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence 4678999999999976 88888654 4678999999999999999999999999999999998878875432
Q ss_pred CCCCCCeEEEEEEEeeeecc
Q 011003 365 VVPPNSTVHYEVELVSFEKE 384 (496)
Q Consensus 365 ~ip~~~~l~f~v~l~~~~~~ 384 (496)
+|.++.|+|+|.++...
T Consensus 216 ---~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 216 ---AGKEATFKVTVKEVKEK 232 (408)
T ss_pred ---CCCeEEEEEEEEEeccC
Confidence 57899999999999863
No 50
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.7e-08 Score=89.51 Aligned_cols=114 Identities=26% Similarity=0.390 Sum_probs=88.9
Q ss_pred cCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEEcC--CCEEEeecCCCccEEEEeCCCcccHHHHHHHccCcCCcEEE
Q 011003 35 GNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLLD--GTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (496)
Q Consensus 35 ~~~g~~~~~l~~G~G~~~~--~~gd~V~v~Y~~~~~d--g~~~~~t~~~~~p~~~~~G~~~~~~gle~~l~~m~~Ge~~~ 110 (496)
.-.||+++|+..|.| +-| ..|..|.+||.....+ ++++|+|+..|+|+.+++|.-.-++-||..|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 446899999999999 555 5899999999987764 56899999999999999999999999999999999999988
Q ss_pred EEecCCc--------------ccCC-----------------------CCCCCCCCCCCceEEEEEEEEEeeccee
Q 011003 111 FTIPPEL--------------AYGE-----------------------SGSPPTIPPNATLQFDVELLSWTSVKDI 149 (496)
Q Consensus 111 i~ip~~~--------------ayg~-----------------------~~~~~~ip~~~~l~~~v~l~~~~~~~~~ 149 (496)
|++.-.. +-|. .+......-.++|+|.|+|+.+..+.++
T Consensus 87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qY 162 (329)
T KOG0545|consen 87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQY 162 (329)
T ss_pred hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhh
Confidence 8664321 1121 1111112234789999999999876654
No 51
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=1.5e-07 Score=94.07 Aligned_cols=88 Identities=20% Similarity=0.073 Sum_probs=79.6
Q ss_pred HHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---cCHHHHHH
Q 011003 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEK 469 (496)
Q Consensus 393 ~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---~~~~~Ai~ 469 (496)
-+..+.+++.|.+||..|-.+.+..|+..|++++.+ .+....+|.|||++++|. ++.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---------------~~~~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---------------VPDAIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---------------ccchhHHHHhHHHHHHhhhccccHHHHHH
Confidence 356678899999999999999999999999999998 556689999999999995 57789999
Q ss_pred HHHHHhcccCCCcchhcccccccccc
Q 011003 470 LCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 470 ~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
||..||++||...|||||.++|+..|
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 52
>PRK01490 tig trigger factor; Provisional
Probab=98.32 E-value=5.1e-06 Score=86.15 Aligned_cols=87 Identities=15% Similarity=0.359 Sum_probs=74.3
Q ss_pred CCCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCcccccccc
Q 011003 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA 364 (496)
Q Consensus 285 ~p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~ 364 (496)
.+..||.|.++|.+.. +|..|+.+ ...++.|.+|.+.+++||+.+|.+|++|+++.|.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~----~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG----KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC----CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 4688999999999997 78887654 4578999999999999999999999999999999988777765332
Q ss_pred CCCCCCeEEEEEEEeeeecc
Q 011003 365 VVPPNSTVHYEVELVSFEKE 384 (496)
Q Consensus 365 ~ip~~~~l~f~v~l~~~~~~ 384 (496)
+|..+.|.|+|.++...
T Consensus 227 ---agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 227 ---AGKEATFKVTVKEVKEK 243 (435)
T ss_pred ---CCCeEEEEEEEEEeccC
Confidence 57889999999999863
No 53
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.32 E-value=3.2e-07 Score=68.62 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=56.5
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD 488 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr 488 (496)
+++.|+|.+|++.|++++...+. ...++.++|.||+++|++.+|...+++++..+|++...+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 57899999999999999998443 478888999999999999999999999999999986665444
Q ss_pred c
Q 011003 489 G 489 (496)
Q Consensus 489 g 489 (496)
|
T Consensus 66 a 66 (68)
T PF14559_consen 66 A 66 (68)
T ss_dssp H
T ss_pred h
Confidence 3
No 54
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.29 E-value=1.1e-06 Score=66.62 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
+.++++++|..|+..+.+++.+ .+....++.++|.|+.++|+|.+|+.+++++|+.+|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5678999999999999999998 4445889999999999999999999999999999999988765
Q ss_pred ccc
Q 011003 487 SDG 489 (496)
Q Consensus 487 rrg 489 (496)
-++
T Consensus 68 ~~a 70 (73)
T PF13371_consen 68 LRA 70 (73)
T ss_pred HHH
Confidence 544
No 55
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.27 E-value=3.6e-06 Score=64.78 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=61.2
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
..+..+...|..++..|+|++|+..|++|+++...... -.+....++.|+|.||..+|++++|+..+++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667788999999999999999999999998433211 1445588999999999999999999999999998
Q ss_pred cc
Q 011003 477 SS 478 (496)
Q Consensus 477 ~d 478 (496)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=1.1e-06 Score=75.41 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=65.1
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
.......|..+++.++|.+|++.|++++...+ ....++.|+|.|++++++|.+|+..++++++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP---------------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34567888999999999999999999988733 236777788888888888888888888888888
Q ss_pred CCCcchhccccccccc
Q 011003 479 VQKGSGIHSDGRFRFG 494 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~ 494 (496)
|++...+|.+|.++..
T Consensus 82 p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 82 PDDPRPYFHAAECLLA 97 (135)
T ss_pred CCChHHHHHHHHHHHH
Confidence 8888888888877654
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.14 E-value=2.6e-06 Score=83.67 Aligned_cols=81 Identities=12% Similarity=-0.018 Sum_probs=67.4
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+.-+-.+|..+...|++.+|+..|++|+++- +....+|+|++.++..+++|.+|+..++++|+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR---------------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3446678999999999999999999999983 3336788888888888888888888888888888
Q ss_pred CCCcchhccccccccc
Q 011003 479 VQKGSGIHSDGRFRFG 494 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~ 494 (496)
|++..+|+++|.+++.
T Consensus 129 P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 129 PTYNYAYLNRGIALYY 144 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877653
No 58
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.14 E-value=5.8e-06 Score=68.24 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=72.8
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
..++....+.-+|..+-..|+...|+++|.+||.+++. +.++|+|||+++.-.++..+|+++.++
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHHHHHHH
Confidence 45777788888999999999999999999999999544 489999999999999999999999999
Q ss_pred HhcccCCCc----chhccccccccc
Q 011003 474 KCESSVQKG----SGIHSDGRFRFG 494 (496)
Q Consensus 474 al~~dp~~~----Ka~~rrg~a~~~ 494 (496)
||++-..-. .||..||..|+.
T Consensus 103 AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 103 ALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHH
Confidence 999975544 366666665543
No 59
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.12 E-value=2.9e-06 Score=53.90 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=30.3
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.+|.|+|.||+.+++|.+|+.+|++||+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=7.1e-06 Score=73.76 Aligned_cols=88 Identities=18% Similarity=0.092 Sum_probs=74.2
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
+...+..+...|..++..|+|.+|+..|.++++..... .....++.|+|.++.++++|.+|+..+.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP------------NDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566677889999999999999999999999863221 112568899999999999999999999999
Q ss_pred hcccCCCcchhccccccccc
Q 011003 475 CESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 475 l~~dp~~~Ka~~rrg~a~~~ 494 (496)
++++|++..+++.+|.++..
T Consensus 99 l~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHhCcccHHHHHHHHHHHHH
Confidence 99999999999888877654
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=2e-06 Score=64.53 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
+..|.++|.+++++++|.+|+.+++++|+++|+++.+|+++|.++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL 50 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999998764
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.99 E-value=1.6e-05 Score=71.19 Aligned_cols=86 Identities=13% Similarity=-0.000 Sum_probs=72.6
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
...+..+...|..++..++|.+|+..|.+|+.+... ......++.|+|.++.+++++.+|+..|.+|+
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677778899999999999999999999987432 11234589999999999999999999999999
Q ss_pred cccCCCcchhcccccccc
Q 011003 476 ESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 476 ~~dp~~~Ka~~rrg~a~~ 493 (496)
+++|.+..+++.+|.++.
T Consensus 100 ~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 100 ERNPFLPQALNNMAVICH 117 (168)
T ss_pred HhCcCcHHHHHHHHHHHH
Confidence 999999988888877665
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=2.7e-06 Score=66.61 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=59.7
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF 491 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a 491 (496)
+++|+.|+..|.+++..-+. ++ ....+.++|.||+++++|.+|+..+++ ++.++.+..++|-.|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 58999999999999997432 11 466788899999999999999999999 99999999999999999
Q ss_pred cccc
Q 011003 492 RFGR 495 (496)
Q Consensus 492 ~~~l 495 (496)
++.+
T Consensus 68 ~~~l 71 (84)
T PF12895_consen 68 LLKL 71 (84)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8765
No 64
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.1e-05 Score=77.12 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=68.7
Q ss_pred CCCCCeEEEEEEEEEcCCcEEEEcCCCCCcccEEEEcCccchhhHHHHHHhccccCcEEEEEEcCCCccCCccccccccC
Q 011003 286 PNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAV 365 (496)
Q Consensus 286 p~~~~~V~v~y~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~gle~~l~~M~~Ge~~~v~i~~~~~yg~~~~~~~~~~ 365 (496)
...||+|+|+|.|.. ||..|.. .....+.|.+|.|+++|||+.+|.||+.||...|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~feg----g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------ 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEG----GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------ 226 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccC----ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------
Confidence 788999999999954 7777754 35778999999999999999999999999998865544444443322
Q ss_pred CCCCCeEEEEEEEeeeec
Q 011003 366 VPPNSTVHYEVELVSFEK 383 (496)
Q Consensus 366 ip~~~~l~f~v~l~~~~~ 383 (496)
.|....|.|+|..+..
T Consensus 227 --aGK~a~F~V~vkeVk~ 242 (441)
T COG0544 227 --AGKEATFKVKVKEVKK 242 (441)
T ss_pred --CCCceEEEEEEEEEee
Confidence 4678999999999985
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=8e-06 Score=82.25 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=69.2
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
..+..+|..+++.|+|.+|+..|.+|+++ ++....+|+++|.+|+++|+|.+|+.+++++|+++|
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---------------~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIEL---------------DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 44567888999999999999999999998 344477899999999999999999999999999999
Q ss_pred CCcchhccccccc
Q 011003 480 QKGSGIHSDGRFR 492 (496)
Q Consensus 480 ~~~Ka~~rrg~a~ 492 (496)
++..+..+.++|.
T Consensus 102 ~~~~~~~~l~~~~ 114 (356)
T PLN03088 102 GDSRFTKLIKECD 114 (356)
T ss_pred CCHHHHHHHHHHH
Confidence 9999888877664
No 66
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.94 E-value=1.7e-05 Score=67.55 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=69.7
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
..+-.+|...+++|+|..|+..++....-++. .+....+.++++-+|++.++|.+|+..+++-|+++|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 35667888999999999999999887776544 233356778999999999999999999999999999
Q ss_pred CCcc---hhccccccccc
Q 011003 480 QKGS---GIHSDGRFRFG 494 (496)
Q Consensus 480 ~~~K---a~~rrg~a~~~ 494 (496)
+|++ |||++|.+++.
T Consensus 79 ~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYE 96 (142)
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 9987 88999977654
No 67
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=3.5e-05 Score=73.16 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=68.4
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-.+|..++++|+|.+|+..|++.+...+.. +.......++|.+|+++++|.+|+..+++.+++.|+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 35578889999999999999999999976542 344555789999999999999999999999999998
Q ss_pred Ccc---hhccccccc
Q 011003 481 KGS---GIHSDGRFR 492 (496)
Q Consensus 481 ~~K---a~~rrg~a~ 492 (496)
|.+ |+|.+|.++
T Consensus 102 ~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 102 HPNIDYVLYMRGLTN 116 (243)
T ss_pred CCchHHHHHHHHHhh
Confidence 865 789999775
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=97.87 E-value=2.4e-05 Score=68.06 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=73.2
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
..+.+-..|-.+|.+|+|.+|...|+-...+ +......+..+|+|+..+++|++|+..+..|..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556777899999999999999999877765 3344667899999999999999999999999999
Q ss_pred cCCCcchhcccccccccc
Q 011003 478 SVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 478 dp~~~Ka~~rrg~a~~~l 495 (496)
+++++...|+.|+|++.+
T Consensus 101 ~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred ccCCCCccchHHHHHHHh
Confidence 999999999999999876
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=1.5e-05 Score=62.06 Aligned_cols=78 Identities=26% Similarity=0.258 Sum_probs=66.8
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+...|..++..|++.+|+..+.++++..+.. ..++.++|.|+...+++.+|+..+++++.+.|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4567888899999999999999999874322 3678899999999999999999999999999999
Q ss_pred cchhccccccccc
Q 011003 482 GSGIHSDGRFRFG 494 (496)
Q Consensus 482 ~Ka~~rrg~a~~~ 494 (496)
..+++..|.++..
T Consensus 68 ~~~~~~~~~~~~~ 80 (100)
T cd00189 68 AKAYYNLGLAYYK 80 (100)
T ss_pred hhHHHHHHHHHHH
Confidence 8888888876643
No 70
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.84 E-value=2.4e-05 Score=80.09 Aligned_cols=51 Identities=6% Similarity=-0.188 Sum_probs=46.7
Q ss_pred HHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 443 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
+++..+.+++|+|..|--.|+..+||..+..||+++|+.+.|+..++.|+.
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 378889999999999999999999999999999999999999999887753
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.84 E-value=3.6e-05 Score=72.79 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.+..+...|..+++.|+|..|+..|.++++..+.. +.....+.++|.||+++++|.+|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999875432 233567899999999999999999999999999
Q ss_pred cCCCcc---hhccccccccc
Q 011003 478 SVQKGS---GIHSDGRFRFG 494 (496)
Q Consensus 478 dp~~~K---a~~rrg~a~~~ 494 (496)
+|++.. ++|.+|.++..
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred CcCCCchHHHHHHHHHHHHH
Confidence 999987 79998887754
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.82 E-value=2.3e-05 Score=72.10 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=57.7
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHH-HhccC--HHHHHHHHHHHh
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKKC 475 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~-~kl~~--~~~Ai~~~~~al 475 (496)
+..+...|..+...|+|..|+..|.+|+++-+. ...++.|+|.|+ ...++ +.+|+..++++|
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------------NAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445667788899999999999999999998433 366666666663 45555 366777777777
Q ss_pred cccCCCcchhccccccccc
Q 011003 476 ESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 476 ~~dp~~~Ka~~rrg~a~~~ 494 (496)
+++|++..+++.+|.+++.
T Consensus 138 ~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 138 ALDANEVTALMLLASDAFM 156 (198)
T ss_pred HhCCCChhHHHHHHHHHHH
Confidence 7777777666666655543
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=3.3e-05 Score=64.21 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=55.2
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-..|..+++.|+|.+|+..|.++++..+.+ .....++.+++.++++.++|.+|+..+.+++..+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 34567777888888888888888887753221 122445667777777777777777777777777766
Q ss_pred C---cchhccccccccc
Q 011003 481 K---GSGIHSDGRFRFG 494 (496)
Q Consensus 481 ~---~Ka~~rrg~a~~~ 494 (496)
+ ..+++..|.++..
T Consensus 72 ~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQE 88 (119)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 5 3456666666543
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=3e-05 Score=49.00 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=30.3
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.++.++|.+++++++|++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568899999999999999999999999999986
No 75
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.76 E-value=3.6e-05 Score=77.38 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
....+..+...|+.+|+.|+|++|+..|++||++-+.+ .....+|+|+|.||.+++++++|+.++.+|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~------------aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP------------DEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556777889999999999999999999999984432 111256999999999999999999999999
Q ss_pred hcc
Q 011003 475 CES 477 (496)
Q Consensus 475 l~~ 477 (496)
|++
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 998
No 76
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.74 E-value=3.4e-05 Score=83.89 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=64.7
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-----------CCCh-H-------HHHHHHHHHHHhhhHHHHHHHh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-E-------EKKQAKALKVACNLNNAACKLK 460 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-----------~~~~-~-------~~~~~~~~~~~~~~N~a~~~~k 460 (496)
..+...|..++..|++.+|+..|.++++.-+... ...+ + ...+.++....++.+++.+++.
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456677888889999999999999987633211 0000 0 0012233346677788888888
Q ss_pred ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
+|+|.+|+.+++++|+++|++..+++.+|.++..
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777654
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.73 E-value=3.8e-05 Score=73.52 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
..+++..+.|++++.+++|..|+-.|..|++. ++.....+..||.+|+.+|+-+.|+.|.+++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~---------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG---------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34678889999999999999999999999987 555556666666666666666666666666666
Q ss_pred ccCCCcchhcccccccc
Q 011003 477 SSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~ 493 (496)
+.|+..-|...||..++
T Consensus 101 lKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLL 117 (504)
T ss_pred cCccHHHHHHHhchhhh
Confidence 66666666666665554
No 78
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.71 E-value=4.8e-05 Score=78.00 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=68.7
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC--------------CChH-----HHHHHHHHHHHhhhHHHHHHHhc
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------FGDE-----EKKQAKALKVACNLNNAACKLKL 461 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~N~a~~~~kl 461 (496)
.+-..||.+-..|+..+|.++|.+||+++..... ..+. ..-++.+..+..++|+|..|-.+
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 4445566666668888888888888887643211 0110 11234556688899999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 462 KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
|++++|+.++.+||+++|..+.||-.+|..|.
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 99999999999999999999999999887653
No 79
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.70 E-value=4.5e-05 Score=51.56 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=39.8
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF 491 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a 491 (496)
.++.++|.+|..+|++++|++.++++|+.+|+|..+|+..|++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 3578999999999999999999999999999999999998864
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.65 E-value=2.3e-05 Score=74.91 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=67.8
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
+++.+.+..+.+.+....++|.+++..+++.++.-+.. ...+...+--+|.||.+-+++.+||..|+++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~-----------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE-----------TMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc-----------cceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 45667777888999999999999999999999862221 2223344445677888888888888888888
Q ss_pred hcccCCCcchhccccccccc
Q 011003 475 CESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 475 l~~dp~~~Ka~~rrg~a~~~ 494 (496)
|+++|+++.+|..||.||++
T Consensus 334 L~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HhcCchHHHHHHHHHHHHhh
Confidence 88888888888888888764
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.61 E-value=7.8e-05 Score=63.79 Aligned_cols=70 Identities=16% Similarity=-0.006 Sum_probs=60.9
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
..+...|..+++.++|.+|+..|.++++..+ .....+.++|.||+.++++.+|+..++++++++|
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP---------------DDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3445678888999999999999999998733 3377889999999999999999999999999999
Q ss_pred CCcch
Q 011003 480 QKGSG 484 (496)
Q Consensus 480 ~~~Ka 484 (496)
++.+.
T Consensus 117 ~~~~~ 121 (135)
T TIGR02552 117 ENPEY 121 (135)
T ss_pred ccchH
Confidence 98773
No 82
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=8.3e-05 Score=68.73 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=67.9
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+-..|..+|..|+|.+|+..|++.+...+.. +....+.+.+|.|+++.++|.+|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567789999999999999999999999876653 2335667899999999999999999999999999
Q ss_pred CCCcc---hhccccccccc
Q 011003 479 VQKGS---GIHSDGRFRFG 494 (496)
Q Consensus 479 p~~~K---a~~rrg~a~~~ 494 (496)
|++.+ |+|++|.+++.
T Consensus 73 P~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHH
Confidence 99865 89999988654
No 83
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.00013 Score=64.89 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=66.5
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+.-+-.+|..+.|.+.++.|+...++||.+ .+.+..++.-||.+|-++..|.+|+.|+.+++++|
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel---------------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIEL---------------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---------------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 445567888999999999999999999998 66778888899999999999999999999999999
Q ss_pred CCCcchhccccccc
Q 011003 479 VQKGSGIHSDGRFR 492 (496)
Q Consensus 479 p~~~Ka~~rrg~a~ 492 (496)
|.+-.| |+|.++
T Consensus 199 Ps~~ea--r~~i~r 210 (271)
T KOG4234|consen 199 PSRREA--REAIAR 210 (271)
T ss_pred cchHHH--HHHHHh
Confidence 988743 555544
No 84
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=5e-05 Score=80.26 Aligned_cols=93 Identities=27% Similarity=0.358 Sum_probs=83.9
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh--ccCHHHHH
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAE 468 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k--l~~~~~Ai 468 (496)
+...-+..+...+++||.+|.+++|..|.-.|..++.+++.+ +.....+++|++.|++. +++|.+++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-----------~~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-----------HHVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-----------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence 456778889999999999999999999999999999998765 56678999999999986 67899999
Q ss_pred HHHHHHhcccCCCcchhccccccccc
Q 011003 469 KLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 469 ~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.+|+-|+...|...+++++|+.+|..
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHH
Confidence 99999999999999999999988754
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.49 E-value=0.00016 Score=67.01 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=54.0
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+...|..++..|+|.+|+..|.++++..+. ...++.+++.++..++++.+|+..++++++++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALTLN 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455556788888888888888888888876322 24456666666666666666666666666666
Q ss_pred CCCcchhcccccccc
Q 011003 479 VQKGSGIHSDGRFRF 493 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~ 493 (496)
|++..+++..|.+++
T Consensus 96 ~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 96 PNNGDVLNNYGTFLC 110 (234)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666665555443
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.48 E-value=9.3e-05 Score=75.50 Aligned_cols=77 Identities=13% Similarity=-0.051 Sum_probs=70.2
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
-|.-++-.++|++|+.+|+.||.. ++....+|+-+++++..-.+..+||..+++||+|.|..+.+
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v---------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQV---------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhc---------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 566788899999999999999998 66668999999999999999999999999999999999999
Q ss_pred hccccccccccC
Q 011003 485 IHSDGRFRFGRV 496 (496)
Q Consensus 485 ~~rrg~a~~~l~ 496 (496)
.|..|.+++.|+
T Consensus 501 RyNlgIS~mNlG 512 (579)
T KOG1125|consen 501 RYNLGISCMNLG 512 (579)
T ss_pred ehhhhhhhhhhh
Confidence 999999988763
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.44 E-value=0.00021 Score=70.14 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=61.7
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+...|..+...|+|..|+..|.+|+++ ++.....+.|++.++..+++|.+|+.+++++++++
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345667899999999999999999999998 33347789999999999999999999999999999
Q ss_pred CCCc
Q 011003 479 VQKG 482 (496)
Q Consensus 479 p~~~ 482 (496)
|++.
T Consensus 163 P~~~ 166 (296)
T PRK11189 163 PNDP 166 (296)
T ss_pred CCCH
Confidence 9986
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00028 Score=66.83 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=59.5
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
.++-.+.+.|.|..|++-..+||.+ ++....+|.-++.+|+-+++|.+|++.+.+||++||+|.
T Consensus 120 NRAAAy~~Lg~~~~AVkDce~Al~i---------------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 120 NRAAAYSKLGEYEDAVKDCESALSI---------------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 5677778899999999999999998 888899999999999999999999999999999999996
No 89
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.43 E-value=0.00021 Score=70.23 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=76.0
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCC---ChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
....|...|++++|..|+..|..||++++.-... .......+..+..-+...++.||+++++..-|+.+.-+.|.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 3457889999999999999999999998653222 2234455566777788899999999999999999999999999
Q ss_pred CCCcchhcccccccc
Q 011003 479 VQKGSGIHSDGRFRF 493 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~ 493 (496)
|.+..-+.|+|-+.+
T Consensus 259 P~~frnHLrqAavfR 273 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFR 273 (569)
T ss_pred cchhhHHHHHHHHHH
Confidence 999999998886654
No 90
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.43 E-value=0.00016 Score=50.67 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=31.8
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
++..+|.++.|+++|.+|...|+.+|+++|+|..|.-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 5678999999999999999999999999999987643
No 91
>PRK12370 invasion protein regulator; Provisional
Probab=97.37 E-value=0.00022 Score=76.36 Aligned_cols=71 Identities=7% Similarity=-0.062 Sum_probs=56.4
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..|..+...|++++|+..|++|+++ ++....++.++|.++..+|++.+|+..++++++++|.+..
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l---------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLL---------------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 4566677788888888888888887 3344677888999999999999999999999999998876
Q ss_pred hhcccc
Q 011003 484 GIHSDG 489 (496)
Q Consensus 484 a~~rrg 489 (496)
+++.++
T Consensus 408 ~~~~~~ 413 (553)
T PRK12370 408 AGITKL 413 (553)
T ss_pred hHHHHH
Confidence 655444
No 92
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.34 E-value=0.00021 Score=80.62 Aligned_cols=76 Identities=7% Similarity=-0.028 Sum_probs=47.7
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..|..+.+.|++.+|+..|.+++.+ ++....+++|++.++..++++.+|+..+++||+++|+++.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l---------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL---------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3455555556666666666666655 2333556667777777777777777777777777777777
Q ss_pred hhccccccccc
Q 011003 484 GIHSDGRFRFG 494 (496)
Q Consensus 484 a~~rrg~a~~~ 494 (496)
+++.+|.++..
T Consensus 679 a~~nLA~al~~ 689 (987)
T PRK09782 679 LIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHH
Confidence 77666666554
No 93
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.29 E-value=0.00039 Score=64.41 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=55.4
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..|..++..|+|.+|+..|.++++... .......+.|++.|+.+++++.+|+..++++++.+|++..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 170 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPL-------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE 170 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH
Confidence 345555666666666666666665311 1122456778899999999999999999999999988888
Q ss_pred hhccccccccc
Q 011003 484 GIHSDGRFRFG 494 (496)
Q Consensus 484 a~~rrg~a~~~ 494 (496)
+++.+|.++..
T Consensus 171 ~~~~la~~~~~ 181 (234)
T TIGR02521 171 SLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.28 E-value=0.00024 Score=77.18 Aligned_cols=81 Identities=7% Similarity=-0.140 Sum_probs=60.9
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+......++.+++.+++++|+..+.+++.. .+.....++++|.|+.++|+|++|+..++++|..+
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG---------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc---------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 334445666666666666666666666665 44447788888999999999999999999998888
Q ss_pred CCCcchhccccccccc
Q 011003 479 VQKGSGIHSDGRFRFG 494 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~ 494 (496)
|++.++|..+|.+|..
T Consensus 185 p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 185 PEFENGYVGWAQSLTR 200 (694)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 8888888888888763
No 95
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.00022 Score=61.84 Aligned_cols=78 Identities=12% Similarity=-0.015 Sum_probs=59.7
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+..-|-.+=..|+|.+|+..|.+|+.+-. .....+.|++.|++++|+...|++.+..||..--.+
T Consensus 72 ~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---------------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 72 WFRLGECCQAQKHWGEAIYAYGRAAQIKI---------------DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 34455555578999999999999999843 348889999999999999999999999999875222
Q ss_pred --cchhccccccccc
Q 011003 482 --GSGIHSDGRFRFG 494 (496)
Q Consensus 482 --~Ka~~rrg~a~~~ 494 (496)
-..+-.||++++.
T Consensus 137 ~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 137 SEHQILRQRAEKMLQ 151 (157)
T ss_pred hhHHHHHHHHHHHHH
Confidence 2344555655543
No 96
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.26 E-value=0.00039 Score=43.85 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=30.4
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.+|.++|.+|.+++++.+|++.+.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568899999999999999999999999999965
No 97
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.25 E-value=0.001 Score=54.13 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc--
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES-- 477 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~-- 477 (496)
--...+|...+..|-|.+|...|.+|+..-. ....++.-...-...-||.-+|.++.++++|.+|+..++++|..
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~sr---tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSR---TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT---TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3445678888999999999999999998732 23333333445667889999999999999999999999999964
Q ss_pred -----cC----CCcchhccccccccccC
Q 011003 478 -----SV----QKGSGIHSDGRFRFGRV 496 (496)
Q Consensus 478 -----dp----~~~Ka~~rrg~a~~~l~ 496 (496)
+. -|+.|.|+||.|+-+++
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~G 114 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLG 114 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred hccccccccchhHHHHHHHHHHHHHhcC
Confidence 33 36788899998887653
No 98
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.20 E-value=0.00034 Score=63.85 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=62.9
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+..-|..++.+|+|++|...|.+|+.--. .......+-|++.|.+|+|++..|.+++.++|++|
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPA-------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 34455667778888888888888888887411 12236678899999999999999999999999999
Q ss_pred CCCcchhccccccc
Q 011003 479 VQKGSGIHSDGRFR 492 (496)
Q Consensus 479 p~~~Ka~~rrg~a~ 492 (496)
|++.-++.-+++-+
T Consensus 170 p~~~~~~l~~a~~~ 183 (250)
T COG3063 170 PQFPPALLELARLH 183 (250)
T ss_pred cCCChHHHHHHHHH
Confidence 99987666555444
No 99
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.00092 Score=55.30 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=59.8
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
....|..+++.++|..|+..|.+++...+.. .....++.+++.|+.+++++.+|+..++++++..|++
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKS------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCC------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4457888999999999999999999874331 1225668999999999999999999999999999998
Q ss_pred cch
Q 011003 482 GSG 484 (496)
Q Consensus 482 ~Ka 484 (496)
..+
T Consensus 110 ~~~ 112 (119)
T TIGR02795 110 SAA 112 (119)
T ss_pred hhH
Confidence 654
No 100
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00043 Score=69.02 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=68.8
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.||-+--+++.++|+..|++|+++ ++....+|.=++.=|+.|++-..|++.++.|++++|.+-+|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL---------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL---------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc---------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 577777889999999999999998 77789999999999999999999999999999999999999
Q ss_pred hcccccccc
Q 011003 485 IHSDGRFRF 493 (496)
Q Consensus 485 ~~rrg~a~~ 493 (496)
||-.||||-
T Consensus 401 WYGLGQaYe 409 (559)
T KOG1155|consen 401 WYGLGQAYE 409 (559)
T ss_pred HhhhhHHHH
Confidence 999999984
No 101
>PRK12370 invasion protein regulator; Provisional
Probab=97.12 E-value=0.00031 Score=75.32 Aligned_cols=70 Identities=13% Similarity=-0.096 Sum_probs=61.8
Q ss_pred hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR 490 (496)
Q Consensus 411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~ 490 (496)
..+++.+|+..+.+|+++ ++....++.++|.++..+++|.+|+..+++||+++|+++.+|+.+|.
T Consensus 316 ~~~~~~~A~~~~~~Al~l---------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL---------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred cchHHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456689999999999998 34447788999999999999999999999999999999999999998
Q ss_pred ccccc
Q 011003 491 FRFGR 495 (496)
Q Consensus 491 a~~~l 495 (496)
+|..+
T Consensus 381 ~l~~~ 385 (553)
T PRK12370 381 NLFMA 385 (553)
T ss_pred HHHHC
Confidence 87653
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0005 Score=63.92 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=68.3
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
-++..|..++..|+|..|+..+.+|..+ .+....+|+-++.||.++|++..|...+.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l---------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL---------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc---------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 3445999999999999999999999998 3444788999999999999999999999999999999
Q ss_pred Ccchhcccccccc
Q 011003 481 KGSGIHSDGRFRF 493 (496)
Q Consensus 481 ~~Ka~~rrg~a~~ 493 (496)
++.++-+.|..|+
T Consensus 167 ~p~~~nNlgms~~ 179 (257)
T COG5010 167 EPSIANNLGMSLL 179 (257)
T ss_pred CchhhhhHHHHHH
Confidence 9988877765443
No 103
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.10 E-value=0.00022 Score=52.58 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=40.7
Q ss_pred hHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 452 LNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 452 ~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
+++|..+++.|+|.+|+..++++++.+|++..+|+.+|.++..+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999999988754
No 104
>PLN02789 farnesyltranstransferase
Probab=97.09 E-value=0.00059 Score=67.43 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=45.8
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
++....++++|+.++.++++|.+|+++|+++|++||+|..||+.|+.++.
T Consensus 138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 55668899999999999999999999999999999999999999987653
No 105
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0016 Score=59.58 Aligned_cols=84 Identities=24% Similarity=0.253 Sum_probs=73.0
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
.-+.+....+.|-.++.+|++..|..-..+||+. ++.....|+-||..|.++|+.+.|-+.+.+|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------------DPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 3455667778999999999999999999999998 5666888999999999999999999999999
Q ss_pred hcccCCCcchhcccccccc
Q 011003 475 CESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 475 l~~dp~~~Ka~~rrg~a~~ 493 (496)
|.++|+|...+.+-|.-|.
T Consensus 96 lsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 96 LSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HhcCCCccchhhhhhHHHH
Confidence 9999999887776665443
No 106
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.07 E-value=0.0012 Score=51.45 Aligned_cols=58 Identities=28% Similarity=0.326 Sum_probs=46.0
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
-+...|..+|+.|+|.+|+..+++ ++. .+....++.-+|.|++++++|++|+....+|
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKL---------------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTH---------------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCC---------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344479999999999999999998 554 3333556666799999999999999998875
No 107
>PLN02789 farnesyltranstransferase
Probab=97.06 E-value=0.00057 Score=67.55 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=35.9
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcccCCCcchhcc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCESSVQKGSGIHS 487 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~dp~~~Ka~~r 487 (496)
+.+.+++.+|+..+.++|++- +....++++|+.|+.+++ ++.+|+..|+++++.+|+|..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~ln---------------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN---------------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC---------------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 345678999999999999873 233344444444444443 2344444444444444444444443
Q ss_pred cc
Q 011003 488 DG 489 (496)
Q Consensus 488 rg 489 (496)
|+
T Consensus 112 R~ 113 (320)
T PLN02789 112 RR 113 (320)
T ss_pred HH
Confidence 33
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.06 E-value=0.00054 Score=74.50 Aligned_cols=82 Identities=4% Similarity=-0.167 Sum_probs=73.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+.--|......|+|++|...|..++.+.+ ....++.|+|.+..+++++++|+..|+++|..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---------------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---------------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---------------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 45556677778899999999999999999944 448999999999999999999999999999999
Q ss_pred CCCcchhcccccccccc
Q 011003 479 VQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~l 495 (496)
|+|..+++.+|.++..+
T Consensus 151 p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 151 SSSAREILLEAKSWDEI 167 (694)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 109
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.00062 Score=68.31 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=72.2
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChH------HHHHHHHHHHHhhhHHHHH
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDE------EKKQAKALKVACNLNNAAC 457 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~N~a~~ 457 (496)
..+..+.-+|...|-.|++..|-..+.++|++.+.... .+++ .-..+++....+|..|++.
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 44778888999999999999999999999987543211 1111 1234556667778888888
Q ss_pred HHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
++-+++|.+|+.++++|++++|+|+-+|-.+|-|++
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 888888888888888888888888888877776554
No 110
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.00 E-value=0.00051 Score=69.25 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=48.4
Q ss_pred HHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch---hcccccccccc
Q 011003 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG---IHSDGRFRFGR 495 (496)
Q Consensus 443 ~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka---~~rrg~a~~~l 495 (496)
.++.....|+|++.+|.++++|++|+..|++||+++|++..| ||.+|.||..+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L 125 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR 125 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc
Confidence 466778999999999999999999999999999999999965 99999988765
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.99 E-value=0.00064 Score=62.50 Aligned_cols=67 Identities=6% Similarity=-0.097 Sum_probs=59.2
Q ss_pred hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR 490 (496)
Q Consensus 411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~ 490 (496)
..++..+++..|.++++. ++.....|.++|.+|+.++++.+|+..+++|++++|+|..+++..|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~---------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRA---------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467778888888888887 44458899999999999999999999999999999999999999888
Q ss_pred cc
Q 011003 491 FR 492 (496)
Q Consensus 491 a~ 492 (496)
++
T Consensus 116 aL 117 (198)
T PRK10370 116 VL 117 (198)
T ss_pred HH
Confidence 75
No 112
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.96 E-value=0.0044 Score=53.84 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=73.8
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~ 471 (496)
...+...|...-..++...++..|.+|+.++... ..+.......+......++..++..++..++|.+|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3445556777778889999999999999987432 123345667888899999999999999999999999999
Q ss_pred HHHhcccCCCcchhccccccccc
Q 011003 472 TKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 472 ~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.+++.+||-+..+|...-++|..
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~ 108 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAA 108 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999998888776666544
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.0021 Score=61.73 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=59.5
Q ss_pred HHhhhhh-HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 403 KEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 403 k~~Gn~~-fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
-..+-.+ ++.++|.+|+..|++.++..+.+ .....++.-+|.+|+..++|.+|+..+.++++..|++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3344444 56789999999999999886543 1224566788888999999999999999998888775
Q ss_pred ---cchhccccccccc
Q 011003 482 ---GSGIHSDGRFRFG 494 (496)
Q Consensus 482 ---~Ka~~rrg~a~~~ 494 (496)
..|||+.|.++..
T Consensus 214 ~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 214 PKAADAMFKVGVIMQD 229 (263)
T ss_pred cchhHHHHHHHHHHHH
Confidence 5577777776643
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.87 E-value=0.00099 Score=69.96 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=68.2
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.+..|+-.+.+++|.+|.++++.++++ +++....|.+++.|++++++|+.|.+++..++.++|+|
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~---------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEI---------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhc---------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 344555567778899999999988888 78889999999999999999999999999999999999
Q ss_pred cchhccccccccc
Q 011003 482 GSGIHSDGRFRFG 494 (496)
Q Consensus 482 ~Ka~~rrg~a~~~ 494 (496)
..||...+.||+-
T Consensus 553 ~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 553 AEAWNNLSTAYIR 565 (777)
T ss_pred hhhhhhhhHHHHH
Confidence 9999988877753
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.86 E-value=0.0024 Score=66.43 Aligned_cols=77 Identities=22% Similarity=0.153 Sum_probs=64.9
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
.+..+..++.-|+.+...++|.+|+..|++|+...+...... ++.....+.|+|..|.+.|+|.+|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 345566667789999999999999999999999876432222 6677899999999999999999999999999
Q ss_pred hccc
Q 011003 475 CESS 478 (496)
Q Consensus 475 l~~d 478 (496)
+++-
T Consensus 310 l~I~ 313 (508)
T KOG1840|consen 310 LEIY 313 (508)
T ss_pred HHHH
Confidence 9874
No 116
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.85 E-value=0.0015 Score=73.89 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=64.9
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+...|..+...|++++|+..|.+|++..+ ....++.|+|.++.++|++.+|+..+++|++++|+
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P---------------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLP---------------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 345677888999999999999999999844 34788999999999999999999999999999999
Q ss_pred Ccchhccccc
Q 011003 481 KGSGIHSDGR 490 (496)
Q Consensus 481 ~~Ka~~rrg~ 490 (496)
+++..+-.|.
T Consensus 710 ~a~i~~~~g~ 719 (987)
T PRK09782 710 QALITPLTPE 719 (987)
T ss_pred CchhhhhhhH
Confidence 9877655543
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.82 E-value=0.0013 Score=66.36 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=66.1
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.+.-+++.+++.+|++.+++++.+. +....+..|+|.+++++|++.+|+...+..+.-+|+++-.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~---------------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALD---------------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 3445667889999999999999884 4447889999999999999999999999999999999999
Q ss_pred hcccccccccc
Q 011003 485 IHSDGRFRFGR 495 (496)
Q Consensus 485 ~~rrg~a~~~l 495 (496)
|...|+||-.+
T Consensus 411 w~~LAqay~~~ 421 (484)
T COG4783 411 WDLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHHHh
Confidence 99999987543
No 118
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.77 E-value=0.0016 Score=71.24 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=53.4
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-..|..+++.|++++|+..|+++++.-+ ....++.|++.++.++|+|.+|+..++++++.+|+
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P---------------~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHP---------------DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 334567777788888888888888887632 22455667777777777777777777777777777
Q ss_pred Ccchhcccccccc
Q 011003 481 KGSGIHSDGRFRF 493 (496)
Q Consensus 481 ~~Ka~~rrg~a~~ 493 (496)
+..+++++|.++.
T Consensus 351 ~~~~~~~~a~al~ 363 (656)
T PRK15174 351 TSKWNRYAAAALL 363 (656)
T ss_pred chHHHHHHHHHHH
Confidence 7665555555543
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.76 E-value=0.0022 Score=68.85 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=70.8
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
...=+.+-+..+...|+|..|++.|..++..-.. ...-+|.++|.||+.++++++|++.+.+||.+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~--------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGY--------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc--------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445677788888999999999999998875221 11678999999999999999999999999999
Q ss_pred cCCCcchhcccccccccc
Q 011003 478 SVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 478 dp~~~Ka~~rrg~a~~~l 495 (496)
+|+|..|..+.+..+.++
T Consensus 479 ~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQL 496 (895)
T ss_pred CCCchhhhhhHHHHHHhc
Confidence 999999999888776654
No 120
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.76 E-value=0.0014 Score=76.62 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=65.4
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
...|..+++.|++.+|+..|+++++.-+. ...++.++|.++++++++.+|+..++++|+++|++.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNT---------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45688899999999999999999998432 256788999999999999999999999999999999
Q ss_pred chhccccccc
Q 011003 483 SGIHSDGRFR 492 (496)
Q Consensus 483 Ka~~rrg~a~ 492 (496)
.++...+.++
T Consensus 420 ~a~~~L~~l~ 429 (1157)
T PRK11447 420 NAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHH
Confidence 8887666554
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.74 E-value=0.0038 Score=55.98 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=57.7
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC--------------H
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------Y 464 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~--------------~ 464 (496)
+..+...|..+++.|+|.+|+..|.+|++..+ .....+.+++.++..+++ |
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~ 136 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNP---------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence 34567788999999999999999999999833 336677889999988887 6
Q ss_pred HHHHHHHHHHhcccCCCc
Q 011003 465 KQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 465 ~~Ai~~~~~al~~dp~~~ 482 (496)
.+|++.+++++.++|+|.
T Consensus 137 ~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 137 DKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHhhCchhH
Confidence 889999999999999874
No 122
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.71 E-value=0.0016 Score=71.19 Aligned_cols=50 Identities=10% Similarity=-0.152 Sum_probs=42.2
Q ss_pred HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
....++.|+|.+++++++|.+|+..++++++++|++..+++..|.+|..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34678889999999999999999999999999999998888888776543
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.71 E-value=0.0039 Score=58.77 Aligned_cols=83 Identities=11% Similarity=-0.026 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHhhhhccCCCCChH--HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---cchhcc
Q 011003 413 GKYARASKRYEKAVKYIEYDTSFGDE--EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK---GSGIHS 487 (496)
Q Consensus 413 ~~y~~A~~~Y~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~---~Ka~~r 487 (496)
+++..|++.|.++++..+........ ..............++|.+|++.|+|.+|+..+.++++..|++ .+|+++
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~ 208 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALAR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHH
Confidence 88999999999999875443111110 1112222333445689999999999999999999999997764 589999
Q ss_pred cccccccc
Q 011003 488 DGRFRFGR 495 (496)
Q Consensus 488 rg~a~~~l 495 (496)
+|.++..+
T Consensus 209 l~~~~~~l 216 (235)
T TIGR03302 209 LVEAYLKL 216 (235)
T ss_pred HHHHHHHc
Confidence 99998765
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.67 E-value=0.005 Score=47.31 Aligned_cols=65 Identities=25% Similarity=0.272 Sum_probs=55.6
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+...|..++..+++..|+..|.++++..+.. ..++.+++.++..++++.+|+..+.++++.+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 35567888888999999999999999874432 367889999999999999999999999998874
No 125
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0023 Score=65.40 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=60.3
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
-+-.-|..+-|.+.|.+|+..|++||.+.+. ....|.-+|.||..+|+++.|++++.+||-++|+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k---------------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK---------------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 3456788888999999999999999999444 4888999999999999999999999999999999
Q ss_pred Cc
Q 011003 481 KG 482 (496)
Q Consensus 481 ~~ 482 (496)
|.
T Consensus 522 n~ 523 (611)
T KOG1173|consen 522 NI 523 (611)
T ss_pred cH
Confidence 94
No 126
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.65 E-value=0.0021 Score=75.17 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=67.3
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+...|+.+...|++.+|+..|++|++..+. ...++.++|.+|.+++++.+|+..++++++++|+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4556888999999999999999999998443 3667899999999999999999999999999999
Q ss_pred Ccchhccccccc
Q 011003 481 KGSGIHSDGRFR 492 (496)
Q Consensus 481 ~~Ka~~rrg~a~ 492 (496)
++.++|.+|..+
T Consensus 528 ~~~~~~a~al~l 539 (1157)
T PRK11447 528 DPEQVYAYGLYL 539 (1157)
T ss_pred CHHHHHHHHHHH
Confidence 999888776543
No 127
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.0059 Score=63.27 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=65.2
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
=.-+...+..+|+.++|..|++.|...++++..+. .+...+++..|++.||+++.+.++|++...+|=+.|
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999999999987651 133448899999999999999999999999999999
Q ss_pred CCCc
Q 011003 479 VQKG 482 (496)
Q Consensus 479 p~~~ 482 (496)
|.++
T Consensus 425 ~~~~ 428 (872)
T KOG4814|consen 425 RQSP 428 (872)
T ss_pred cccH
Confidence 9875
No 128
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.58 E-value=0.0013 Score=64.01 Aligned_cols=94 Identities=18% Similarity=0.082 Sum_probs=67.2
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh-HH-HHHHH------HHHHHhhhHHHHHHHhc
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD-EE-KKQAK------ALKVACNLNNAACKLKL 461 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~-~~-~~~~~------~~~~~~~~N~a~~~~kl 461 (496)
-+...|+.+.+.|++.+|++.|++|++.-+.+.. ..+ ++ ...+. +....++..+|.+|+.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 3456777888999999999999999998654321 111 11 11111 22245678999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 462 KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
|++++|+..++++++.+|+|+..+...|.++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999888877776654
No 129
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.0019 Score=67.24 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=59.5
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
..+-.-|..+.|+++|+.|.-.|++|+++ ++....+.+-.+..+.++|+.++|+..+++|+-+||
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI---------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcC---------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 34444555555666666666666666665 666677777788888888888888888888888888
Q ss_pred CCcchhcccccccccc
Q 011003 480 QKGSGIHSDGRFRFGR 495 (496)
Q Consensus 480 ~~~Ka~~rrg~a~~~l 495 (496)
.|+-..|.||+.|+++
T Consensus 555 kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSL 570 (638)
T ss_pred CCchhHHHHHHHHHhh
Confidence 8888888888877664
No 130
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.56 E-value=0.0036 Score=37.76 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=30.1
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.++.++|.|++.++++.+|+..+.++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467899999999999999999999999998864
No 131
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.55 E-value=0.0018 Score=41.49 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=24.9
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+|+|+|.+|.++|+|++|+..+.++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999976554
No 132
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.51 E-value=0.003 Score=71.10 Aligned_cols=81 Identities=19% Similarity=0.108 Sum_probs=69.1
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+..+...|+.++++|+|.+|+..|.++++..+. ...++..+|.+++++|+|.+|+..++++++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN---------------DAEARFLLGKIYLALGDYAAAEKELRKALSLG 86 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345778899999999999999999999997433 36788899999999999999999999999999
Q ss_pred CCCcchhccccccccc
Q 011003 479 VQKGSGIHSDGRFRFG 494 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~~ 494 (496)
|.+..+++..|+++..
T Consensus 87 ~~~~~~~~~~a~~~~~ 102 (899)
T TIGR02917 87 YPKNQVLPLLARAYLL 102 (899)
T ss_pred CChhhhHHHHHHHHHH
Confidence 9888777777666543
No 133
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.0005 Score=70.33 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=56.9
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
+-.-|-.+-...++.+|+..|++|+.+ .+-.+.+.+|+|.||+.+|.|++|++++-.||.+.+.
T Consensus 467 WNRLGAtLAN~~~s~EAIsAY~rALqL---------------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 467 WNRLGATLANGNRSEEAISAYNRALQL---------------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHhhHHhcCCcccHHHHHHHHHHHhc---------------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 345677777788999999999999999 6666999999999999999999999999999999775
No 134
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.50 E-value=0.0065 Score=61.87 Aligned_cols=46 Identities=17% Similarity=0.011 Sum_probs=33.5
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.++.+++.++++.+++.+|+..++++++.+|++..+++..|.++..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 3566777777777777778777777777777777777776666543
No 135
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.46 E-value=0.0034 Score=70.69 Aligned_cols=96 Identities=18% Similarity=0.067 Sum_probs=57.4
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-----------CCh--HHH------HHHHHHHHHhhhHHHHHH
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------FGD--EEK------KQAKALKVACNLNNAACK 458 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-----------~~~--~~~------~~~~~~~~~~~~N~a~~~ 458 (496)
.+..+...|..+++.|+|.+|+..|.++++..+.... ..+ +-. .+..+....++..++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3455667889999999999999999999886432210 000 000 011112234455566666
Q ss_pred HhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 459 LKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 459 ~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
.+++++.+|+..++++++++|++..+++.++.+++
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 238 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILI 238 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666655543
No 136
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.43 E-value=0.0049 Score=55.85 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=68.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
|.-+-++|+-+=.-|-+..|...|++++.+ ++....+++-++.-+...++|+.|.+.++.++++|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai---------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAI---------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhc---------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 444556676666677778888888888888 66678999999999999999999999999999999
Q ss_pred CCCcchhcccccccc
Q 011003 479 VQKGSGIHSDGRFRF 493 (496)
Q Consensus 479 p~~~Ka~~rrg~a~~ 493 (496)
|.+--|+.+||.+++
T Consensus 130 p~y~Ya~lNRgi~~Y 144 (297)
T COG4785 130 PTYNYAHLNRGIALY 144 (297)
T ss_pred CcchHHHhccceeee
Confidence 999999999998764
No 137
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.003 Score=64.68 Aligned_cols=85 Identities=22% Similarity=0.158 Sum_probs=67.1
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+++.|...|..+.|.+|...|++++.-.+.... + .......++|++.++.|++.|.+||..+++||.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 4578888999999999999999999954332110 0 1135778999999999999999999999999999999
Q ss_pred Ccchhcccccccc
Q 011003 481 KGSGIHSDGRFRF 493 (496)
Q Consensus 481 ~~Ka~~rrg~a~~ 493 (496)
++.+|---|-+|.
T Consensus 488 ~~~~~asig~iy~ 500 (611)
T KOG1173|consen 488 DASTHASIGYIYH 500 (611)
T ss_pred chhHHHHHHHHHH
Confidence 9887765554443
No 138
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.42 E-value=0.0064 Score=67.86 Aligned_cols=78 Identities=8% Similarity=-0.139 Sum_probs=65.7
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
...|..+...|++.+|+..+.+++...+.. ..++.++|.++.+++++.+|+..++++++++|++.
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 456777788999999999999999884433 67889999999999999999999999999999998
Q ss_pred chhcccccccccc
Q 011003 483 SGIHSDGRFRFGR 495 (496)
Q Consensus 483 Ka~~rrg~a~~~l 495 (496)
.+++-+|.+++++
T Consensus 428 ~l~~~~a~~al~~ 440 (765)
T PRK10049 428 NLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887766543
No 139
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.41 E-value=0.0071 Score=58.34 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
-.++-.+|+.++|..|-...+.|+.+ +..+..+|+.|+++...+|+..+|.+||+.||++.|++.
T Consensus 135 ~NRA~AYlk~K~FA~AE~DC~~AiaL---------------d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 135 INRALAYLKQKSFAQAEEDCEAAIAL---------------DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHh---------------hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 35677888999999999999999988 889999999999999999999999999999999999874
No 140
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.31 E-value=0.0091 Score=55.85 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
-+..+-++|....+.|+|.+|+..|++..+-.+. .+....+.+.++.+++|-++|..|+...++-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988865443 2233566778999999999999999999999999
Q ss_pred cCCCcc---hhcccccccc
Q 011003 478 SVQKGS---GIHSDGRFRF 493 (496)
Q Consensus 478 dp~~~K---a~~rrg~a~~ 493 (496)
.|.+.. ++|-+|.+++
T Consensus 101 yP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred CCCCCChhHHHHHHHHHHh
Confidence 998875 6677776543
No 141
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.31 E-value=0.0016 Score=64.60 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=64.9
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..||.+|++.+|.+|++.|.-||.-.+.. + ..+++++++|++.++.++|.|..||..++.+.+..|+-.-
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsi---n-------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSI---N-------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhcccc---c-------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 57999999999999999999999875442 1 5678999999999999999999999999999999996544
Q ss_pred hhccccccc
Q 011003 484 GIHSDGRFR 492 (496)
Q Consensus 484 a~~rrg~a~ 492 (496)
| |..-.|+
T Consensus 312 ~-~nl~i~~ 319 (840)
T KOG2003|consen 312 A-LNLIICA 319 (840)
T ss_pred h-hhhhhhh
Confidence 4 4443333
No 142
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.0025 Score=63.39 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=57.0
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC------CCC-------hHHHHHHHH------HHHHhhhHHHHHHHh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFG-------DEEKKQAKA------LKVACNLNNAACKLK 460 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~------~~~-------~~~~~~~~~------~~~~~~~N~a~~~~k 460 (496)
..+-.+||..|..|+|.+|.+.|+.||+--..+. .+. ++...-+-. ..+.++..+|..|--
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456789999999999999999999997421110 000 111111111 223334455666666
Q ss_pred ccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003 461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRF 491 (496)
Q Consensus 461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a 491 (496)
+++...||+.+.+|..+-|+++..|-..|..
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 7777777777777777777777666555543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.26 E-value=0.012 Score=51.09 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=61.0
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.....|..++..|+|++|+..|.+++..-. + ..+...+.+++|.+++.+++|.+|+..++.+ .-.+-
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d-----------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~ 116 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAP-D-----------PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF 116 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-C-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch
Confidence 345578889999999999999999998531 1 4566778889999999999999999999763 22333
Q ss_pred Ccchhccccccccc
Q 011003 481 KGSGIHSDGRFRFG 494 (496)
Q Consensus 481 ~~Ka~~rrg~a~~~ 494 (496)
...++..+|.+|+.
T Consensus 117 ~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 117 KALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666554
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.24 E-value=0.014 Score=48.75 Aligned_cols=67 Identities=18% Similarity=0.024 Sum_probs=54.8
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
+-+.+..+-..|+.++|+..|.+|+..-.. .+....++.++|.++..+|++++|+...++++...|+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345677778899999999999999985211 3344568889999999999999999999999988777
No 145
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.23 E-value=0.027 Score=42.57 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
..+....++|-.+|.+.+.++|+++++++|+-... .+.+-.++.-++.+|...|+|.++++.+..=++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999999998654 334567778899999999999999998877555
Q ss_pred c
Q 011003 477 S 477 (496)
Q Consensus 477 ~ 477 (496)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 4
No 146
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.22 E-value=0.0019 Score=40.87 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH
Q 011003 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (496)
Q Consensus 421 ~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~ 469 (496)
+|++||++ ++....+|+|+|.+|...|++.+|++
T Consensus 1 ~y~kAie~---------------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL---------------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH---------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37889988 56669999999999999999999973
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.18 E-value=0.0026 Score=47.82 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 455 AACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 455 a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
+..|++.++|.+|++.+++++.++|+++.+|+.+|.++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~ 42 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL 42 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh
Confidence 56789999999999999999999999999999999888654
No 148
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.17 E-value=0.0059 Score=68.16 Aligned_cols=91 Identities=10% Similarity=-0.100 Sum_probs=57.6
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CChHH------HHHHHHHHHHhhhHHHHHHHhcc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEE------KKQAKALKVACNLNNAACKLKLK 462 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~~~------~~~~~~~~~~~~~N~a~~~~kl~ 462 (496)
+...|..+.+.|++.+|+..|+++++.-+.... ..++- ..+..+.... +.++|.++..++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 556777888999999999999999887432210 00000 0111222234 666777777777
Q ss_pred CHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
++.+|+..++++++++|++..+++.+|.++.
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777777777777777777777666665543
No 149
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.15 E-value=0.0044 Score=65.58 Aligned_cols=82 Identities=18% Similarity=0.028 Sum_probs=67.2
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHH--HHHHHhc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKKCE 476 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~--~~~~al~ 476 (496)
+..+...|..+-.+|++.+|.+.|..|+.+ ++....+..-+|.|+++.|+-.-|.+ -...+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL---------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 344567778888889999999999999988 44457777788999999998888877 8888999
Q ss_pred ccCCCcchhcccccccccc
Q 011003 477 SSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~~l 495 (496)
+||.|.+|||..|+.+..+
T Consensus 749 ~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hCCCCHHHHHHHHHHHHHc
Confidence 9999999999888876654
No 150
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.14 E-value=0.015 Score=55.90 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=61.1
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+.-.|..+|..|+|..|+..|.+.++.++.. +....++.+++.|+.+++++.+|+..++++++..|+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34567888999999999999999999886653 344677888999999999999999999999999998
Q ss_pred Ccc
Q 011003 481 KGS 483 (496)
Q Consensus 481 ~~K 483 (496)
+.-
T Consensus 250 s~~ 252 (263)
T PRK10803 250 TDG 252 (263)
T ss_pred CHH
Confidence 764
No 151
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.10 E-value=0.013 Score=59.54 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=18.6
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
..++.+++.++.+.++|.+|++.+.++++.+|.+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 3445555555555555555555555555555443
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0067 Score=65.83 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=64.4
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
-+..+..++.-+|.+++|..|+..|++|++..+... +-...-++.|+.|+++-+.|+....+||++
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--------------aD~rIgig~Cf~kl~~~~~a~~a~~ralqL 228 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--------------ADVRIGIGHCFWKLGMSEKALLAFERALQL 228 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--------------CCccchhhhHHHhccchhhHHHHHHHHHhc
Confidence 345667788899999999999999999999865432 233445789999999999999999999999
Q ss_pred cCCCcchhcccc
Q 011003 478 SVQKGSGIHSDG 489 (496)
Q Consensus 478 dp~~~Ka~~rrg 489 (496)
||.++.|+.-.|
T Consensus 229 dp~~v~alv~L~ 240 (1018)
T KOG2002|consen 229 DPTCVSALVALG 240 (1018)
T ss_pred ChhhHHHHHHHH
Confidence 999988876554
No 153
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=0.0031 Score=65.69 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=71.9
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC--------C--CChHHHH---------HHHHHHHHhhhHHHHHHHh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--------S--FGDEEKK---------QAKALKVACNLNNAACKLK 460 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~--------~--~~~~~~~---------~~~~~~~~~~~N~a~~~~k 460 (496)
+.+...||-+--+++++.|+++|++|+.+-+... + ..+|-.. .+++-...+|.-++.+|+|
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 4677889999999999999999999998744210 1 1112111 1233446678899999999
Q ss_pred ccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 461 LKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 461 l~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
+++++.|..++.+|+++||.|.-.+..-|+.+..
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence 9999999999999999999998777766665543
No 154
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.04 E-value=0.0074 Score=37.37 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.7
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
++.++|.||.++|++.+|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999874
No 155
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.01 E-value=0.0017 Score=41.08 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=23.1
Q ss_pred HHHHHhcccCCCcchhcccccccccc
Q 011003 470 LCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 470 ~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
.|++||+++|+|+.||+++|.+|..+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~ 26 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ 26 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999988654
No 156
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.99 E-value=0.01 Score=63.95 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=68.9
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC----------CChHHHHHHHHHHH---------HhhhHHHHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS----------FGDEEKKQAKALKV---------ACNLNNAACKL 459 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~----------~~~~~~~~~~~~~~---------~~~~N~a~~~~ 459 (496)
+..+..++|.+|.+|++.+|.+....+|+.-+.... .-.+..+.+..... ..|.-+|--..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 678889999999999999999999999987432210 00011112222222 33334555566
Q ss_pred hccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
++++|++|+-++++||+++|.|.+-+|+|+..|.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 7889999999999999999999999999987765
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.96 E-value=0.0031 Score=48.23 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.3
Q ss_pred HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc-------CCCcchhcccccccccc
Q 011003 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS-------VQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d-------p~~~Ka~~rrg~a~~~l 495 (496)
+....+++|+|.+|..+++|.+|+..+++||++. |.-+.++++.|.++..+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 3557889999999999999999999999999762 12256777777776543
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.93 E-value=0.025 Score=55.09 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHhhhHHhhhhhHhc-ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
.+..++..|..+... +++++|+..|++|+.++.... .......++.+.|.++.++++|.+|++.++++..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666667 899999999999999976532 1445578899999999999999999999999876
Q ss_pred c
Q 011003 477 S 477 (496)
Q Consensus 477 ~ 477 (496)
.
T Consensus 184 ~ 184 (282)
T PF14938_consen 184 K 184 (282)
T ss_dssp T
T ss_pred H
Confidence 4
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.92 E-value=0.021 Score=50.85 Aligned_cols=75 Identities=13% Similarity=-0.028 Sum_probs=52.4
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH-------
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT------- 472 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~------- 472 (496)
..+...|..+...|++.+|+..|.+|+++-+.. .........++.|++..+.+++++.+|+.+++
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999999872221 11233445556666666669999886665555
Q ss_pred HHhcccCCCc
Q 011003 473 KKCESSVQKG 482 (496)
Q Consensus 473 ~al~~dp~~~ 482 (496)
+++..+|.+.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 5677788654
No 160
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.009 Score=56.64 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=55.4
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
|..+...|.-+|+.|+|+.|+++|+.|+.. ......+-.|+|+|+++.++|..|++...+.++.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv---------------sGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV---------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh---------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 456677899999999999999999999997 3334667789999999999999999999998864
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.64 E-value=0.021 Score=57.94 Aligned_cols=71 Identities=17% Similarity=0.005 Sum_probs=48.2
Q ss_pred HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489 (496)
Q Consensus 410 fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg 489 (496)
+..++..+|++..+++++..+.+ ..++.-.|..+++.++++.|+..+.+|.++.|++.++||..|
T Consensus 211 l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La 275 (395)
T PF09295_consen 211 LLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLA 275 (395)
T ss_pred HhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34455566666666666542222 556666777777777777777777777777777777777777
Q ss_pred cccccc
Q 011003 490 RFRFGR 495 (496)
Q Consensus 490 ~a~~~l 495 (496)
++|..+
T Consensus 276 ~~Yi~~ 281 (395)
T PF09295_consen 276 ECYIQL 281 (395)
T ss_pred HHHHhc
Confidence 777654
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.58 E-value=0.0048 Score=45.62 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 458 KLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 458 ~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
.++.|+|.+|+..++++++.+|+|..+++..|++|+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 38 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ 38 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999988754
No 163
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.57 E-value=0.036 Score=57.86 Aligned_cols=75 Identities=27% Similarity=0.210 Sum_probs=62.5
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.+..+.+.+..+-..++|++|...|+++++++...... .+......+.|+|.+|+++|+|++|.+.+.+||.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~-------~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE-------DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456667778888888999999999999999997633222 1456688999999999999999999999999998
Q ss_pred cc
Q 011003 477 SS 478 (496)
Q Consensus 477 ~d 478 (496)
+.
T Consensus 396 ~~ 397 (508)
T KOG1840|consen 396 IL 397 (508)
T ss_pred HH
Confidence 64
No 164
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.57 E-value=0.0094 Score=52.69 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC----------HHHHHHHHHHHhcccCCCcch
Q 011003 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 415 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~----------~~~Ai~~~~~al~~dp~~~Ka 484 (496)
|+.|.+.|+.+... ++.....++|-+.+++.+-+ +++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~---------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHh---------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 56677777776665 55557777777777776633 678899999999999999999
Q ss_pred hcccccccccc
Q 011003 485 IHSDGRFRFGR 495 (496)
Q Consensus 485 ~~rrg~a~~~l 495 (496)
+|..|.||..+
T Consensus 72 lw~lGnA~ts~ 82 (186)
T PF06552_consen 72 LWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 165
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.029 Score=61.05 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=69.6
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+---+|.+|-+|+|..+...+..|+... ....+.+..+.++|.||..+|+|.+|..++-++++.+++|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNT------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 3446788999999999999999999863 2256777889999999999999999999999999999999
Q ss_pred -cchhcccccccccc
Q 011003 482 -GSGIHSDGRFRFGR 495 (496)
Q Consensus 482 -~Ka~~rrg~a~~~l 495 (496)
+=++|..||.++..
T Consensus 341 ~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKR 355 (1018)
T ss_pred ccccccchhHHHHHh
Confidence 88888888877643
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.38 E-value=0.038 Score=56.04 Aligned_cols=74 Identities=19% Similarity=0.089 Sum_probs=59.1
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+.-+..++..+.++++|+.|+...++|+++. +.....|..+|.||.++++|++|+..++.+= +.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls---------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P-m~ 297 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELS---------------PSEFETWYQLAECYIQLGDFENALLALNSCP-ML 297 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc-CC
Confidence 4455678889999999999999999999994 4448889999999999999999998888554 33
Q ss_pred CCCcchhccc
Q 011003 479 VQKGSGIHSD 488 (496)
Q Consensus 479 p~~~Ka~~rr 488 (496)
+.+.|-.++|
T Consensus 298 ~~~~k~~~~~ 307 (395)
T PF09295_consen 298 TYKDKYKLKR 307 (395)
T ss_pred CCccchhhhc
Confidence 4444544443
No 167
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.20 E-value=0.029 Score=36.69 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=27.2
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+.+++|+|.+|..+++|.+|+..+.+++++-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999998763
No 168
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.16 E-value=0.029 Score=49.69 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC-----------HHHHHHHHHHHhcccCCC
Q 011003 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-----------YKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 413 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-----------~~~Ai~~~~~al~~dp~~ 481 (496)
.-+++|+.+|++||.+ ++.+..++.|++.+|..++. |++|..++.+|.+.+|+|
T Consensus 49 ~miedAisK~eeAL~I---------------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKI---------------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3478888888888888 77778889999999987644 899999999999999997
Q ss_pred cchhcccc
Q 011003 482 GSGIHSDG 489 (496)
Q Consensus 482 ~Ka~~rrg 489 (496)
. +||++
T Consensus 114 e--~Y~ks 119 (186)
T PF06552_consen 114 E--LYRKS 119 (186)
T ss_dssp H--HHHHH
T ss_pred H--HHHHH
Confidence 4 45543
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=0.033 Score=52.65 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=64.7
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+-+.+-.+++.|+|..|...|..-++-++... ....++.=|+.|++.+++|.+|...+..+.+-.|++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 77888899999999999999999998877642 224455567889999999999999999999888888
Q ss_pred cch---hccccccccc
Q 011003 482 GSG---IHSDGRFRFG 494 (496)
Q Consensus 482 ~Ka---~~rrg~a~~~ 494 (496)
.|| +|..|.++..
T Consensus 212 ~KApdallKlg~~~~~ 227 (262)
T COG1729 212 PKAPDALLKLGVSLGR 227 (262)
T ss_pred CCChHHHHHHHHHHHH
Confidence 764 7777766543
No 170
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.03 Score=56.30 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=76.5
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC----CCChH---------------HHHHHHHHHHHhhhHHHHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----SFGDE---------------EKKQAKALKVACNLNNAACKL 459 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~----~~~~~---------------~~~~~~~~~~~~~~N~a~~~~ 459 (496)
...+--.|.++..-++-..|+..|.+|+++.+.+. .+.+. ...++.+....++.-++.||.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 33444578888889999999999999999876542 22221 113445566788889999999
Q ss_pred hccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
|+++..+||+++..|+...-.+.-||+|.|++|-.|
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 999999999999999999888899999999987543
No 171
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.98 E-value=0.037 Score=61.62 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=68.1
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-C----------CCh--HHHHHHH------HHHHHhhhHHHHHH
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-S----------FGD--EEKKQAK------ALKVACNLNNAACK 458 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~----------~~~--~~~~~~~------~~~~~~~~N~a~~~ 458 (496)
.+....+++-..+++|+|..|+..|.++++.-+... . ... +-...++ ......+..+|.+|
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 344677889999999999999999999998755431 1 000 0001111 11133445567899
Q ss_pred HhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 459 LKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 459 ~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
..+++|.+|++.++++|+.+|+|+.+++-.+.++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~ 147 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA 147 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998875554443
No 172
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.81 E-value=0.036 Score=53.83 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=54.4
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
....++..+++.++.....++..... .+....++.-+|.++.+.|++.+|+.++.+||+++|+|..+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPA-------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccC-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34456677888888888888664311 12336778899999999999999999999999999999998
Q ss_pred hcccccccc
Q 011003 485 IHSDGRFRF 493 (496)
Q Consensus 485 ~~rrg~a~~ 493 (496)
+...+.++.
T Consensus 183 ~~~l~~~li 191 (280)
T PF13429_consen 183 RNALAWLLI 191 (280)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 877766655
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.69 E-value=0.067 Score=56.57 Aligned_cols=65 Identities=11% Similarity=-0.032 Sum_probs=56.0
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.|-.+..+|++++|...|++|+.+ ++ ....|..++.++...|++++|++.+.+|++++|.++.-
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L---------------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDL---------------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 455556789999999999999998 33 25689999999999999999999999999999998753
Q ss_pred h
Q 011003 485 I 485 (496)
Q Consensus 485 ~ 485 (496)
|
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
No 174
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.66 E-value=0.034 Score=55.80 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=43.8
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
..|..+...|++.+|...|.++++.-+.+ ..++.++|.+++.++++++|+..+++++...|.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 45667788899999999999999874332 455666666666666666666666666666553
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=94.64 E-value=0.046 Score=47.87 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=55.7
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
.-|-.+-..++|++|+..|..|..+-..+ ...+...|.||+.+++...|+.++..|++ .|. -.
T Consensus 76 GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~-~~ 138 (165)
T PRK15331 76 GLAAVCQLKKQFQKACDLYAVAFTLLKND---------------YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE-DE 138 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCC---------------CCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc-hH
Confidence 34444456889999999999998874433 34467899999999999999999999998 354 33
Q ss_pred hhccccccccc
Q 011003 484 GIHSDGRFRFG 494 (496)
Q Consensus 484 a~~rrg~a~~~ 494 (496)
.+-+||++++.
T Consensus 139 ~l~~~A~~~L~ 149 (165)
T PRK15331 139 SLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHH
Confidence 45566766653
No 176
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.58 E-value=0.15 Score=41.86 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=56.1
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.....+.+.|+|.+++..-.+||.|++...++++++. .+.+.+-.|||.++--+|+..+|+..+.++-++
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3445667899999999999999999998888877764 456778889999999999999999999998764
No 177
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.55 E-value=0.097 Score=52.51 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=68.4
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-------------CCh--HH-HHH------HHHHHHHhhhHHHHHHH
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGD--EE-KKQ------AKALKVACNLNNAACKL 459 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------------~~~--~~-~~~------~~~~~~~~~~N~a~~~~ 459 (496)
..-++..++..|++.+|+..+.++++..+.+.. ... .. ... ..+.....+.++|.+++
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 334677889999999999999999987543320 000 00 011 11222456678999999
Q ss_pred hccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 460 KLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 460 kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.+|++.+|+..|+++++++|++.-+++..|.++..
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999888888877654
No 178
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.49 E-value=0.026 Score=55.10 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 414 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
+|.+|...|+.....+. ....+++.+|.|++.+++|.+|...+.+||+.+|+++.++..++.+.
T Consensus 182 ~~~~A~y~f~El~~~~~---------------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFG---------------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp CCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccC---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 57777777777544322 12567888999999999999999999999999999999888876543
No 179
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.31 E-value=0.2 Score=39.80 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=49.1
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
..+.++|..|+....+...+......... .......++|+|.++...|++++|+..+++|+++-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45789999999999998887433211110 23345568899999999999999999999999874
No 180
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.30 E-value=0.076 Score=32.93 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.0
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~ 430 (496)
..+...|..+++.|+|++|+..|.+|+++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4456789999999999999999999999743
No 181
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.22 E-value=0.35 Score=39.88 Aligned_cols=83 Identities=18% Similarity=0.040 Sum_probs=64.7
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHH----HHhc
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT----KKCE 476 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~----~al~ 476 (496)
++--.|+..++.+++-.|+-.|++|+.+.+.....++.+..++-...+...-|+|.-+..+++-+-.+++.. +++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 344578999999999999999999999866543334445555666677778899999999999998888764 5677
Q ss_pred ccCCCcc
Q 011003 477 SSVQKGS 483 (496)
Q Consensus 477 ~dp~~~K 483 (496)
+-|.+++
T Consensus 83 LiPQCp~ 89 (140)
T PF10952_consen 83 LIPQCPN 89 (140)
T ss_pred hccCCCC
Confidence 7787654
No 182
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.19 E-value=0.23 Score=42.96 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=66.3
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
+.+.+...-+.....+..+++..+...+.+.++-.+. ........+.+|.+++..++|.+|+..++++
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666666777777788888877777776665332 2234666788999999999999999999999
Q ss_pred hcccCCC---cchhcccccccccc
Q 011003 475 CESSVQK---GSGIHSDGRFRFGR 495 (496)
Q Consensus 475 l~~dp~~---~Ka~~rrg~a~~~l 495 (496)
+...|+. ..|.+|.|++++.+
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHc
Confidence 9987655 45888888887653
No 183
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.09 E-value=0.074 Score=50.80 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=64.8
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
...|......+...++.|+.++|...|..|+.+.+. ...++.-++...-.-++.-+|-.++.+||
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---------------~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT---------------NPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---------------CHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 334444445667788999999999999999998443 35666667776666778889999999999
Q ss_pred cccCCCcchhcccccc
Q 011003 476 ESSVQKGSGIHSDGRF 491 (496)
Q Consensus 476 ~~dp~~~Ka~~rrg~a 491 (496)
.++|.|.+|+-.|++.
T Consensus 178 tisP~nseALvnR~RT 193 (472)
T KOG3824|consen 178 TISPGNSEALVNRART 193 (472)
T ss_pred eeCCCchHHHhhhhcc
Confidence 9999999999999864
No 184
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.05 E-value=0.065 Score=51.65 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=47.5
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC---CCcch
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV---QKGSG 484 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp---~~~Ka 484 (496)
.+|-.++-+-|++.|.+.|.+ -.....+++|+++|++--++|+-++..+.+||..-- .-...
T Consensus 333 ~yfY~~~PE~AlryYRRiLqm---------------G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQM---------------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred ccccCCChHHHHHHHHHHHHh---------------cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 344444555555555555554 222367888999999888888888888888887643 23567
Q ss_pred hccccccccc
Q 011003 485 IHSDGRFRFG 494 (496)
Q Consensus 485 ~~rrg~a~~~ 494 (496)
||+.|....+
T Consensus 398 WYNlg~vaV~ 407 (478)
T KOG1129|consen 398 WYNLGFVAVT 407 (478)
T ss_pred hhccceeEEe
Confidence 8887766543
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.063 Score=51.40 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=53.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC----------------CCChH------HHHHHHHHHHHhhhHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------------SFGDE------EKKQAKALKVACNLNNAA 456 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~----------------~~~~~------~~~~~~~~~~~~~~N~a~ 456 (496)
++.+---|..++..+++..|...|.+|+++..... ..+.+ +-...++......+=+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 45556678889999999999999999999854321 11111 112233344555555666
Q ss_pred HHHhccCHHHHHHHHHHHhcccCCC
Q 011003 457 CKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 457 ~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.++..++|.+|+......|+..|.+
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666654
No 186
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.13 Score=51.17 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
...+.-+|+.+...++..+|+-.|..|..+ .+.+..+|--+-.||+..+.+++|...++.+++.-
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQML---------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhc---------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 455667888888999999999999988888 66778999999999999999999999999999999
Q ss_pred CCCcchhcccc
Q 011003 479 VQKGSGIHSDG 489 (496)
Q Consensus 479 p~~~Ka~~rrg 489 (496)
|++++++---|
T Consensus 399 ~~sA~~LtL~g 409 (564)
T KOG1174|consen 399 QNSARSLTLFG 409 (564)
T ss_pred hcchhhhhhhc
Confidence 99999876554
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.75 E-value=0.069 Score=52.99 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
++..+...+-..||.+|-.|+|..|+..-+.-|++..... -+...-.+++|++.||.-+++|..|++++.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---------DRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---------hHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 3444555566678999999999999999988887743221 0334467789999999999999999999888
Q ss_pred Hhcc
Q 011003 474 KCES 477 (496)
Q Consensus 474 al~~ 477 (496)
+|.+
T Consensus 261 tl~L 264 (639)
T KOG1130|consen 261 TLNL 264 (639)
T ss_pred HHHH
Confidence 7654
No 188
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.71 E-value=0.11 Score=32.41 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=25.8
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~ 429 (496)
..+-..|..++..++|.+|+..|++|+++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456678999999999999999999999973
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.26 E-value=0.26 Score=47.90 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=38.2
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc-cCHHHHHHHHHHHhcc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKKCES 477 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl-~~~~~Ai~~~~~al~~ 477 (496)
+|++.++.+|+..|.+|++++..... ...-..++.++|..|.+. +++++|++.+.+|+++
T Consensus 84 ~~k~~~~~~Ai~~~~~A~~~y~~~G~---------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 84 CYKKGDPDEAIECYEKAIEIYREAGR---------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCT----------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555554422110 234477888999999998 9999999999999886
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.14 E-value=0.2 Score=52.39 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=60.6
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
.+|.-+..+|+.++|++.|++|+.. ..+...+...++..++.|++-+.+|.+|.+++.+.++.+ +|.|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSk 339 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSK 339 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHH
Confidence 4566667888999999999988853 123466778899999999999999999999999999864 7899
Q ss_pred hhcccc
Q 011003 484 GIHSDG 489 (496)
Q Consensus 484 a~~rrg 489 (496)
|+|.-.
T Consensus 340 a~Y~Y~ 345 (468)
T PF10300_consen 340 AFYAYL 345 (468)
T ss_pred HHHHHH
Confidence 988653
No 191
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.00 E-value=0.07 Score=54.10 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=60.1
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
++-..++.++|..|++-..+|++. .+....+|.-+|.+++++++|.+|+.++++...+.|+.++|
T Consensus 44 Ra~a~lK~e~~~~Al~Da~kaie~---------------dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 44 RALAHLKVESFGGALHDALKAIEL---------------DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred hhhhheeechhhhHHHHHHhhhhc---------------CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 455677899999999999999998 67889999999999999999999999999999999998776
Q ss_pred h
Q 011003 485 I 485 (496)
Q Consensus 485 ~ 485 (496)
.
T Consensus 109 ~ 109 (476)
T KOG0376|consen 109 T 109 (476)
T ss_pred H
Confidence 3
No 192
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.99 E-value=0.17 Score=42.51 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003 447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
+-.|..-+|..|.++++|.+++.+|+..|+.+|+|..|.-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556777999999999999999999999999999987653
No 193
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.86 E-value=0.26 Score=48.16 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=61.4
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
+.....+...|.+-.|++||..|++.|.- ++....+-.|+|+||.|+.=|.-+-+-..--|+.-|
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 44445666778888999999999999876 666788888999999999999888888777788888
Q ss_pred CCcchhcccccc
Q 011003 480 QKGSGIHSDGRF 491 (496)
Q Consensus 480 ~~~Ka~~rrg~a 491 (496)
+..=|..-++..
T Consensus 217 dStiA~NLkacn 228 (557)
T KOG3785|consen 217 DSTIAKNLKACN 228 (557)
T ss_pred CcHHHHHHHHHH
Confidence 877665555443
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.70 E-value=0.16 Score=32.25 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.0
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKY 428 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~ 428 (496)
+...|+.+.+.|+|++|+..|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999999999999998865
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.3 Score=48.67 Aligned_cols=66 Identities=11% Similarity=-0.044 Sum_probs=55.7
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..+.-+-..|++..++....++|..+.+ ..+|.-++..+...+++++|++++.+||++||+|-+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D----------------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD----------------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 3445556788888898888888886544 578889999999999999999999999999999987
Q ss_pred hh
Q 011003 484 GI 485 (496)
Q Consensus 484 a~ 485 (496)
++
T Consensus 507 sl 508 (564)
T KOG1174|consen 507 TL 508 (564)
T ss_pred HH
Confidence 65
No 196
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.45 E-value=0.67 Score=35.16 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC--CCCChHHHHHHHHHHHHhhhHHHHHH
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--TSFGDEEKKQAKALKVACNLNNAACK 458 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~N~a~~~ 458 (496)
+.|..+-.++..+=+.|+|.+|+.+|.+|+.+|... .+..++.....-..++.=|.+||...
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~L 67 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQAL 67 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888889999999999999999987542 22122222222244455566666543
No 197
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.44 E-value=0.67 Score=34.97 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=45.4
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHHHHHh
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLK 460 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~~~~k 460 (496)
+.|..+-.++..+=+.|+|.+|+.+|++|+..|..... ..++....+-..++.=|.|||...-+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~ 68 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEK 68 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999999999998754322 23333444455556667777765543
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.11 Score=50.19 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=57.0
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
-.++...+--|+|..|+.--++|+.+ ++...+++.--|.|++.|+.|.+|...|+..|+++-.+-
T Consensus 123 ~NRAAa~~~l~NyRs~l~Dcs~al~~---------------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 123 TNRAAAQLYLGNYRSALNDCSAALKL---------------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc---------------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 34555566678999999999999998 777899999999999999999999999999998875544
Q ss_pred ch
Q 011003 483 SG 484 (496)
Q Consensus 483 Ka 484 (496)
+|
T Consensus 188 ~~ 189 (390)
T KOG0551|consen 188 KA 189 (390)
T ss_pred HH
Confidence 43
No 199
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.36 E-value=0.71 Score=41.48 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.-..+.+.|+.+++-|++..|++.|.++..++.. ......+++|+..+.+-.++|..+....++|-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34456778999999999999999999999887543 455677788888889999999999998888855
Q ss_pred c
Q 011003 477 S 477 (496)
Q Consensus 477 ~ 477 (496)
+
T Consensus 102 ~ 102 (177)
T PF10602_consen 102 L 102 (177)
T ss_pred H
Confidence 4
No 200
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=0.24 Score=46.23 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=45.3
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---cCHHHHHHHHHHHhc
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKKCE 476 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---~~~~~Ai~~~~~al~ 476 (496)
+.+.+-++-++..++|++|.-+|.+.+-. .|....++.-+|..++-+ .++.-|.+++.++|+
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~---------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLI---------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777776655 444455555556555543 456667777777777
Q ss_pred ccCCCcchhc
Q 011003 477 SSVQKGSGIH 486 (496)
Q Consensus 477 ~dp~~~Ka~~ 486 (496)
++|.|..|||
T Consensus 220 l~~~~~ral~ 229 (289)
T KOG3060|consen 220 LNPKNLRALF 229 (289)
T ss_pred hChHhHHHHH
Confidence 7777766665
No 201
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.16 E-value=0.36 Score=47.39 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=70.9
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-------CC----Ch----HH-------------HHHHHHHHHH
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SF----GD----EE-------------KKQAKALKVA 449 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-------~~----~~----~~-------------~~~~~~~~~~ 449 (496)
...+..+.|.++|...++++|+..|++.|.-+.+.. .. .+ ++ ..+-......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999998764310 00 00 00 0122345677
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc-----chhcccccccccc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG-----SGIHSDGRFRFGR 495 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~-----Ka~~rrg~a~~~l 495 (496)
.|+|+|..+.++.+|.+++.+|...+.+-...+ .++.-.|.|+++|
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL 135 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence 899999999999999999999999998854333 4555566666664
No 202
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.15 E-value=0.28 Score=54.71 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=38.4
Q ss_pred hHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 452 LNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 452 ~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.=+=.||-++++|++++.....+|+++|.|.+|.+..+.+|++
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3344899999999999999999999999999999999988864
No 203
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.94 E-value=0.59 Score=35.60 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHhhhHHHHHH
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACK 458 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~N~a~~~ 458 (496)
..+..+-.+|..+=+.|+|.+|+.+|.+||.+|...- ...++.....-..+..-|.+||...
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~L 66 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAI 66 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999999875432 1223344444455555666666543
No 204
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=91.80 E-value=0.2 Score=53.25 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-..|....+.++++.|...|.+++.+ ++.....|+|++.+|+++++-.+|.....+||+.+-.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL---------------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTL---------------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhc---------------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 3445777778889999999999999988 5566889999999999999999999999999999987
Q ss_pred Ccchhc
Q 011003 481 KGSGIH 486 (496)
Q Consensus 481 ~~Ka~~ 486 (496)
|.+.|-
T Consensus 586 ~w~iWE 591 (777)
T KOG1128|consen 586 HWQIWE 591 (777)
T ss_pred CCeeee
Confidence 777654
No 205
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.71 E-value=0.23 Score=55.27 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=38.9
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
-++..+|.||-+++++++|+..++++|++||+|+-|+-+.|-.|
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 37888999999999999999999999999999999888777544
No 206
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.59 E-value=0.4 Score=50.64 Aligned_cols=70 Identities=26% Similarity=0.177 Sum_probs=54.2
Q ss_pred hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
.-+...|+|++|+....+..+.+.+ +..++--+|.+++++|++++|...+...|+.||+|..-|.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3345678888888888776655332 3677788999999999999999999999999999986554
Q ss_pred ccccc
Q 011003 487 SDGRF 491 (496)
Q Consensus 487 rrg~a 491 (496)
....|
T Consensus 77 ~L~~~ 81 (517)
T PF12569_consen 77 GLEEA 81 (517)
T ss_pred HHHHH
Confidence 44333
No 207
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.58 E-value=0.23 Score=55.51 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=23.7
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
++..|..+...|+|.+|+..|+++++.-+.
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344466777889999999999999997543
No 208
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.43 E-value=0.22 Score=52.59 Aligned_cols=52 Identities=15% Similarity=-0.061 Sum_probs=46.3
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
......++..+|++|-.+|++++|++..++||+..|..+..|+.||+.|...
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 4455677889999999999999999999999999999999999999887543
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.33 E-value=0.62 Score=44.16 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=59.4
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
-|..+|.+|+|..|...|.++++-++..... ...++-++.|+..+++-++|...+.++++--|+...|
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA------------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKA------------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCC------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 5778899999999999999999987664332 4567789999999999999999999999999988766
Q ss_pred h
Q 011003 485 I 485 (496)
Q Consensus 485 ~ 485 (496)
-
T Consensus 252 ~ 252 (262)
T COG1729 252 K 252 (262)
T ss_pred H
Confidence 4
No 210
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=0.89 Score=47.43 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=64.0
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-..+..+...|+|.+|++...+|++++....+.++...+++......+...+|.++..+|+-.+|...+..+|+.+|-
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 34456677778999999999999998887544333333344555666778889999999999999999999999999875
Q ss_pred Cc
Q 011003 481 KG 482 (496)
Q Consensus 481 ~~ 482 (496)
+.
T Consensus 257 D~ 258 (652)
T KOG2376|consen 257 DE 258 (652)
T ss_pred Cc
Confidence 53
No 211
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=90.88 E-value=0.83 Score=34.60 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
++.|..+-.+|...=..|+|++|+.+|..||.+|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456777778888899999999999999999998754
No 212
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=90.88 E-value=1.1 Score=33.93 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-CCCChHHHHHHHHHHHHhhhHHHH
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAA 456 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~N~a~ 456 (496)
+..|..+-.+|...=+.|+|.+|+.+|..|++++... ....++...+.-..+..=|++||.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE 64 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888999999999999999987553 222334444445555555666663
No 213
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.87 E-value=0.79 Score=44.47 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=67.6
Q ss_pred ccChHHHHHHHhhhHHhhhhhHhcc-cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHH
Q 011003 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (496)
Q Consensus 389 ~~~~~e~~~~a~~~k~~Gn~~fk~~-~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~A 467 (496)
.+++....+.+..+-.-|..+++++ +|..|+...++|.++++... ..+.......+++..++..+|.||+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~-~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPG-KMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhh-hccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 5567777888999999999999999 99999999999999986521 111223445678899999999999999987654
Q ss_pred HHHHHHHhcc
Q 011003 468 EKLCTKKCES 477 (496)
Q Consensus 468 i~~~~~al~~ 477 (496)
.+ |..+++.
T Consensus 104 ~k-a~~~l~~ 112 (278)
T PF08631_consen 104 EK-ALNALRL 112 (278)
T ss_pred HH-HHHHHHH
Confidence 44 6665543
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.24 Score=46.55 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=51.8
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
+..+-.+.-+++|..|.+.|.++++. ++..+.+-+|-|+|++-+++..+|++..+.+++.+|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~---------------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRM---------------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhcccc---------------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44444455688899999999988887 33347778899999999999999999999999999863
No 215
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.59 E-value=0.43 Score=43.96 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=53.3
Q ss_pred hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
..+++.+++..|.+.|.+|+.+.+.+ ..-|..++....|.+++..|.+.++++|++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34678899999999999999985544 67788889999999999999999999999999764
No 216
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.42 E-value=1.2 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
+.|..+-.+|..+=+.|+|.+|+.+|.+|+.+|..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45666777888888899999999999999998754
No 217
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.17 E-value=0.55 Score=48.36 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=69.2
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-----------CCCh-HH-HHHHHH------HH-HHhhhHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGD-EE-KKQAKA------LK-VACNLNN 454 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-----------~~~~-~~-~~~~~~------~~-~~~~~N~ 454 (496)
+.+.+.+.-.+|-..+..|+|..|.+...++.+..+... ...+ +. ...+.. .. ..+..-+
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 455677777888888999999999999988887643210 0000 00 001111 11 1234445
Q ss_pred HHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 455 AACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 455 a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
|..++..++|+.|+..+++.++..|+|..+++..+.++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888899999999999999999999999998888877654
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.09 E-value=1.2 Score=39.81 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
...-||.+...|+|.+|...|.+++.-+-. -...+++.+|.+++..+++..|....++..+.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA--------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA--------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC--------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 345788999999999999999999975321 11677888999999999999999999999998874
No 219
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.07 E-value=0.22 Score=48.13 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=61.3
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..|--++-.++|.-++..|.+|+..... ....+.+|.|++.+..-.|++.-|..++.-||..|++|..
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~------------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQ------------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccC------------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 4455567889999999999999998653 2344778999999999999999999999999999999988
Q ss_pred hhcccc
Q 011003 484 GIHSDG 489 (496)
Q Consensus 484 a~~rrg 489 (496)
||.+.|
T Consensus 431 alnNLa 436 (478)
T KOG1129|consen 431 ALNNLA 436 (478)
T ss_pred HHHhHH
Confidence 887665
No 220
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.83 E-value=0.76 Score=38.38 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=58.3
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
..+...|..+...|++++|+...++++.-.+. .+....+...+|.|...+|++++|+..+-.+|.-..
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~ 106 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPD------------DELNAALRVFLALALYNLGRPKEALEWLLEALAETL 106 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34556788888999999999999999876543 123456667789999999999999999998885332
Q ss_pred CCcchhcccccc
Q 011003 480 QKGSGIHSDGRF 491 (496)
Q Consensus 480 ~~~Ka~~rrg~a 491 (496)
. -|+|+..
T Consensus 107 ~----~y~ra~~ 114 (120)
T PF12688_consen 107 P----RYRRAIR 114 (120)
T ss_pred H----HHHHHHH
Confidence 2 6776644
No 221
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.73 E-value=1.7 Score=32.93 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC-CCChHHHHHHHHHHHHhhhHHHHH
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAAC 457 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~N~a~~ 457 (496)
++.+..+-.+|...=..|+|++|+.+|.+|+..|.... ...++.....-..++.=|.+||..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888889999999999999999999875432 112222333333344445555543
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=89.67 E-value=0.32 Score=49.58 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc---------cCHHHHHHHHHHHhcccCCCcch
Q 011003 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 414 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl---------~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
..+.|+..+.+|+.. .++++....+|.=+|.||+.+ .+-.+|+..+++|+++||+|+.|
T Consensus 273 ~~~~Al~lf~ra~~~------------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNK------------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI 340 (458)
T ss_pred HHHHHHHHHHHHhhc------------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345666777777732 122666688888888888865 23567889999999999999999
Q ss_pred hccccccc
Q 011003 485 IHSDGRFR 492 (496)
Q Consensus 485 ~~rrg~a~ 492 (496)
++..|.++
T Consensus 341 ~~~~g~~~ 348 (458)
T PRK11906 341 LAIMGLIT 348 (458)
T ss_pred HHHHHHHH
Confidence 99998754
No 223
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=89.61 E-value=0.64 Score=43.65 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=54.0
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
.+-..|-.+-+.|++..|...|.+|+++.... ..+.+|++..|+-.|++..|......+-..-+.
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 44568888999999999999999999995443 677888888888888888888888877655554
Q ss_pred Ccc
Q 011003 481 KGS 483 (496)
Q Consensus 481 ~~K 483 (496)
+..
T Consensus 201 d~~ 203 (257)
T COG5010 201 DSR 203 (257)
T ss_pred chH
Confidence 443
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.35 E-value=1.3 Score=41.08 Aligned_cols=89 Identities=18% Similarity=0.317 Sum_probs=60.7
Q ss_pred HHHHhhhHHhhhhhHhc--ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 396 IEAAGKKKEQGNTLFKA--GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~--~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
+..+.+++.+--+.|.. .++++||.+|++|-+++... +....-..|++--|.-...+++|.+||.-+++
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445543 58999999999999997542 22445566777777777789999999999999
Q ss_pred HhcccCCC------cchhccc-ccccc
Q 011003 474 KCESSVQK------GSGIHSD-GRFRF 493 (496)
Q Consensus 474 al~~dp~~------~Ka~~rr-g~a~~ 493 (496)
+....-+| +|.||-+ |.||+
T Consensus 180 va~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 180 VARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 87654444 5777655 45554
No 225
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=89.30 E-value=1.7 Score=32.78 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCC-CChHHHHHHHHHHHHhhhHHHH
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAA 456 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~N~a~ 456 (496)
++.+..+-.+|...=+.|+|++|+..|..|+..|..... ..++.....-..++.-|.+||.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE 64 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAE 64 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 345566667788888889999999999999998754322 2223333333444445555554
No 226
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.28 E-value=0.44 Score=48.89 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=35.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 454 NAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 454 ~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.+..++..+++..|+..++++++.+|+|+.++...+.+|..
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 47788999999999999999999999999888877776653
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.63 E-value=0.99 Score=38.69 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC---------------HHHH
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD---------------YKQA 467 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~---------------~~~A 467 (496)
...|-.+|++++|..|+..|.+-|++-+..... .-++.-+++|++++.. ...|
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v------------dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A 118 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV------------DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA 118 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc------------cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHH
Confidence 456778999999999999999999986554322 3445567888888776 8999
Q ss_pred HHHHHHHhcccCCCcc
Q 011003 468 EKLCTKKCESSVQKGS 483 (496)
Q Consensus 468 i~~~~~al~~dp~~~K 483 (496)
+.++.++++.-|++.-
T Consensus 119 ~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 119 FRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHCcCChh
Confidence 9999999999998753
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=88.62 E-value=0.73 Score=46.00 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=55.2
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC---------------CCChHHHHH---------H------HHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------------SFGDEEKKQ---------A------KALKV 448 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~---------------~~~~~~~~~---------~------~~~~~ 448 (496)
..++-.+|..++|.|++...+..|+.|+..=..+. -+.+ -.+. + ..-.+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~D-Y~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKD-YEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhh-HHHHHhhhhhhHHHHHHhcchhccc
Confidence 45666789999999999999999999987521110 0000 0000 0 01113
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccC------CCcchhccccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSV------QKGSGIHSDGRFRFG 494 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp------~~~Ka~~rrg~a~~~ 494 (496)
+..-|++..+--+|.|.+|+.+|.+-|.+-. ....|||..|.+|..
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha 147 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA 147 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence 3344666666666677777777776655421 234677777666543
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.41 E-value=0.94 Score=30.11 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=26.0
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~ 432 (496)
+...|..+...|++++|++.|+++++..+.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3456788899999999999999999985543
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.41 E-value=1.6 Score=37.52 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=55.7
Q ss_pred ccccChHHHH--HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCH
Q 011003 387 SWDMNTEEKI--EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464 (496)
Q Consensus 387 ~~~~~~~e~~--~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~ 464 (496)
.|.....+.+ .....+...+..+...|+|..|+..+.+++.. ++..-.+|..+-.||..+|++
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---------------dP~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL---------------DPYDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---------------STT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHCcCH
Confidence 4544444443 34566677777888999999999999999998 555577888899999999999
Q ss_pred HHHHHHHHHHh
Q 011003 465 KQAEKLCTKKC 475 (496)
Q Consensus 465 ~~Ai~~~~~al 475 (496)
.+|+..+.++-
T Consensus 113 ~~A~~~Y~~~~ 123 (146)
T PF03704_consen 113 AEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888763
No 231
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.03 E-value=0.3 Score=51.27 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=45.7
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD 488 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr 488 (496)
.-..++|.+|+.+|+.|+++ .+....++.-+|.-+.+|++|+-..+.=.+-|+++|.+---|+--
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~---------------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI---------------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 33567888888888888887 344466666677777777777777776666777776665555544
Q ss_pred ccc
Q 011003 489 GRF 491 (496)
Q Consensus 489 g~a 491 (496)
|.+
T Consensus 150 Avs 152 (700)
T KOG1156|consen 150 AVA 152 (700)
T ss_pred HHH
Confidence 433
No 232
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.44 E-value=1.2 Score=43.13 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=42.4
Q ss_pred HHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 445 ~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
-..+.+|+-+|+.++-..+++.|+....+|++-||+++.|=.-.|+.+++
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence 34577889999999999999999999999999999999887777766554
No 233
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.36 E-value=3.7 Score=31.03 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
+..|..+..+|...=+.|+|++|+.+|.+|++.|..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455666777888888899999999999999998754
No 234
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.31 E-value=2.7 Score=44.63 Aligned_cols=45 Identities=11% Similarity=-0.172 Sum_probs=38.1
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
.+|.=+|..++..++|.+|...+++|++++|+ .-+|+.+|+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~ 465 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYEL 465 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 44666788888899999999999999999994 6799999887654
No 235
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.02 E-value=3.4 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=29.0
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
+.+..+-.+|+..=..|+|++|++.|..|++++..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34556667777778899999999999999999765
No 236
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=86.89 E-value=0.87 Score=46.48 Aligned_cols=48 Identities=8% Similarity=-0.206 Sum_probs=41.2
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
..++.=++..+++.++.++|++.+.+++.++|+..-..+..|++|+..
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 556666888999999999999999999999999877777788887654
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.79 E-value=1.4 Score=40.55 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCCh--HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc---chhc
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG---SGIH 486 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~---Ka~~ 486 (496)
.+...+|+..|+..++.++.+.-..+ .....+......--...|.-|++.+.|..|+..|+.+|+.-|+.. .|++
T Consensus 103 ~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~ 182 (203)
T PF13525_consen 103 QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALA 182 (203)
T ss_dssp -HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 34566888888888887766533322 223455666666778899999999999999999999999988763 5788
Q ss_pred ccccccccc
Q 011003 487 SDGRFRFGR 495 (496)
Q Consensus 487 rrg~a~~~l 495 (496)
+.+.++..|
T Consensus 183 ~l~~~y~~l 191 (203)
T PF13525_consen 183 RLAEAYYKL 191 (203)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 887777654
No 238
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=0.51 Score=46.14 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=45.5
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
.|--.|..|+|++|+..|+-+..- +.-...+..|+|-|++-+|.|.+|.....+|-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~---------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK---------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc---------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 355678999999999999988773 11226788999999999999999998877764
No 239
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.40 E-value=1.2 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.4
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~ 428 (496)
+.+-..|..+.+.|++.+|+..|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556788899999999999999999997
No 240
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.19 E-value=2.9 Score=39.71 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=52.9
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.|..+|+.|+|.+|+..|+.+...+... .-..+...++.++..|+.++++.+..+..|-+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 78999999999999999999997664321 01456788889999999999999999999887653
No 241
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=85.98 E-value=3.6 Score=42.04 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=53.0
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------------------------------CCCCh---HHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------------------------TSFGD---EEK 440 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------------------------------~~~~~---~~~ 440 (496)
.+.........|-++|+.|+|.+|+..|...|..+.-. ....+ ++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 44445555667999999999999999999999865211 11110 000
Q ss_pred H------------HHHHHHHHhhhHHHHH-HHhccCHHHHHHHHHHHhcccCCCc
Q 011003 441 K------------QAKALKVACNLNNAAC-KLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 441 ~------------~~~~~~~~~~~N~a~~-~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
+ .+.+....+-++.|+. .+|++||.-|-..|.+.|++.|+..
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 0 1122223333344443 3589999999999999999998764
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.98 E-value=0.56 Score=47.81 Aligned_cols=94 Identities=11% Similarity=-0.041 Sum_probs=70.6
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhh-hhccC-CCCChHHH-HHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYD-TSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~-~~~~~-~~~~~~~~-~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
.-....|..+|+-+.|..++..|.+||+ .+..- ..+..... .-.......+++|.+..|+..|+...|.+++.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3445678888999999999999999996 33211 11111110 111223467789999999999999999999999999
Q ss_pred ccCCCcchhcccccccc
Q 011003 477 SSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 477 ~dp~~~Ka~~rrg~a~~ 493 (496)
.--.|+.-|.|.|.|++
T Consensus 364 vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCcHHHHHHHHHHH
Confidence 98899999999998764
No 243
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.61 E-value=1.2 Score=28.70 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+|.-++-+.+..++|.+|+.|+.+||++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 57778888999999999999999999875
No 244
>PRK10941 hypothetical protein; Provisional
Probab=85.10 E-value=1 Score=43.27 Aligned_cols=52 Identities=10% Similarity=-0.095 Sum_probs=43.0
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
..+....+.|+=.+|++.++|..|+.+++..|.++|+++--+--||-+|..|
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL 228 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL 228 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4466778889999999999999999999999999999887666677666554
No 245
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.78 E-value=2.2 Score=40.89 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.+.+++.+.+..+..+++.--|..|++.+.+++|+..|.++|.+||-+...
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~ 315 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQD 315 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHH
Confidence 345567788888999999999999999999999999999999999976543
No 246
>PRK10941 hypothetical protein; Provisional
Probab=84.23 E-value=3.2 Score=39.98 Aligned_cols=68 Identities=10% Similarity=-0.082 Sum_probs=57.0
Q ss_pred hhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchh
Q 011003 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGI 485 (496)
Q Consensus 406 Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~ 485 (496)
-+.+.+.++|..|+++-...+.+.+.+ ..-+.-|+.+|.+++.+..|+.|.+.-|+..|+.+.|-
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~d---------------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPED---------------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 345678999999999999999986554 44455699999999999999999999999999987765
Q ss_pred ccc
Q 011003 486 HSD 488 (496)
Q Consensus 486 ~rr 488 (496)
.-|
T Consensus 253 ~ik 255 (269)
T PRK10941 253 MIR 255 (269)
T ss_pred HHH
Confidence 544
No 247
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=2.2 Score=40.13 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=64.0
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccC-------------CCCChHHHHHHHH------HHHHhhhHHHHHHHhcc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------------TSFGDEEKKQAKA------LKVACNLNNAACKLKLK 462 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~-------------~~~~~~~~~~~~~------~~~~~~~N~a~~~~kl~ 462 (496)
.+-+|-.+-..|+|++|++.|...++--+.+ ...+.+-.++++. ....+|.-+|..|+.++
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3446666777899999999998877532111 0111111222222 22667889999999999
Q ss_pred CHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 463 DYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 463 ~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
+|.+|..++++++-++|.|+--+-|.|..++
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999876666665543
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=1.4 Score=41.46 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=42.6
Q ss_pred HHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 447 KVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 447 ~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
...++.|.|..|+-.++|.+|...++++++.||.++-|...||.|++-
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 366788999999999999999999999999999999888888877654
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.39 E-value=2.7 Score=41.85 Aligned_cols=92 Identities=17% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhh-hhccCCCCC------------------hHHHHHHHHHHHHhhhHHHHHHHhc--
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL-- 461 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~N~a~~~~kl-- 461 (496)
-+.++-++.+|+-.+|+......++ .+....... .............+++-+|.-...+
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~ 267 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYS 267 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 3456666777777888888877777 332210000 0012223445566666666666666
Q ss_pred ----cCHHHHHHHHHHHhcccCCCcchhccccccccc
Q 011003 462 ----KDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFG 494 (496)
Q Consensus 462 ----~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~ 494 (496)
+.+.+++..+.+|++++|++.|+|++.|..+..
T Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 268 KLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 788999999999999999999999998876543
No 250
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.35 E-value=0.96 Score=43.33 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=47.6
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD 488 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr 488 (496)
+.+..+|..||++...-.+- .+.....++-++.||+..++|..|-.++++...+-|...+--+--
T Consensus 20 lI~d~ry~DaI~~l~s~~Er---------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELER---------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhc---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 34566666666655443332 233355677799999999999999999999999999876543333
Q ss_pred cccc
Q 011003 489 GRFR 492 (496)
Q Consensus 489 g~a~ 492 (496)
|+.+
T Consensus 85 AQSL 88 (459)
T KOG4340|consen 85 AQSL 88 (459)
T ss_pred HHHH
Confidence 4433
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.30 E-value=2.2 Score=27.39 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~ 430 (496)
+..+-..|+.++..|+|.+|...|.+++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 44566789999999999999999999999854
No 252
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=2 Score=41.38 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
-++.+..+-.++...=+.++|.+|+..|..|++|+..
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4666777777788888899999999999999999754
No 253
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.98 E-value=11 Score=28.87 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC------CCChHHHHHHHHHHHHhhhHHHHHHHhcc
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKLK 462 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~N~a~~~~kl~ 462 (496)
.+.|-..-++|-.+=..|+.++|+..|+++++.+..-. ....+++..+..+..+...|+..+-.++.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~ 77 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQ 77 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666677777777999999999999999885421 23446778888888888888877765543
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=81.62 E-value=2.8 Score=42.95 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=16.7
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
+..+.-+|..+.-.|+..+|++..++||+++|.
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 444444444444555555555555555555553
No 255
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=81.39 E-value=1.2 Score=49.38 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=61.8
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
+|--+.+.+++..|+..++.|++. .+....++.-++.+|...|.|..|++.+++|..++|.+.-+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~---------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRT---------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcC---------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 566667889999999999999998 55668899999999999999999999999999999998777
Q ss_pred hcccc
Q 011003 485 IHSDG 489 (496)
Q Consensus 485 ~~rrg 489 (496)
-|..|
T Consensus 633 ~fk~A 637 (1238)
T KOG1127|consen 633 RFKEA 637 (1238)
T ss_pred HHHHH
Confidence 76655
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=81.32 E-value=5.1 Score=33.77 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=58.3
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
+.++.+..++..+--+|+-++|+.-.++|+++.... .......|..|+..|.++++-..|..++..|-+
T Consensus 75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 445566677777778899999999999999985432 334567789999999999999999999999877
Q ss_pred ccCC
Q 011003 477 SSVQ 480 (496)
Q Consensus 477 ~dp~ 480 (496)
+-..
T Consensus 144 LGS~ 147 (175)
T KOG4555|consen 144 LGSK 147 (175)
T ss_pred hCCH
Confidence 6543
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.04 E-value=3.4 Score=36.74 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=30.2
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRF 491 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a 491 (496)
...+.+++.++...+++..|+..+.+++...|.....++..+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 45567777777777788888888888887777644444444433
No 258
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=80.99 E-value=1.5 Score=46.39 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=37.5
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg 489 (496)
..||.=++..+..-++|.+||+++..||.++|+|...|+-.+
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 567888999999999999999999999999999988776554
No 259
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.98 E-value=2.6 Score=44.16 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=49.9
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHH-------------------HHHHHHHHHHhhhHHHHHHHhccCH
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE-------------------KKQAKALKVACNLNNAACKLKLKDY 464 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~N~a~~~~kl~~~ 464 (496)
-+|..+|+.++|.+|+..|+..++--..+ .+++ ..+.......++.|+|-.++..++|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 47888999999999999998876531110 0010 0111122456788999999999999
Q ss_pred HHHHHHHHHHhc
Q 011003 465 KQAEKLCTKKCE 476 (496)
Q Consensus 465 ~~Ai~~~~~al~ 476 (496)
.+|++-..+|++
T Consensus 192 ~qA~elL~kA~~ 203 (652)
T KOG2376|consen 192 NQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHH
Confidence 999999988844
No 260
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=80.37 E-value=2.7 Score=45.35 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=58.6
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcc
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHS 487 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~r 487 (496)
.+.+.++-.+|..+..+|-++ .+.....|.-++.++...+++.+|.+.+..||.+||+++-+.--
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~---------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKI---------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhc---------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 334455556676777777776 56668889999999999999999999999999999999988777
Q ss_pred cccccccc
Q 011003 488 DGRFRFGR 495 (496)
Q Consensus 488 rg~a~~~l 495 (496)
.|++|+.+
T Consensus 724 la~~lle~ 731 (799)
T KOG4162|consen 724 LAELLLEL 731 (799)
T ss_pred HHHHHHHh
Confidence 77776543
No 261
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=80.34 E-value=5.8 Score=40.61 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=53.8
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
+.+.+.+.-.+|-..+..|+|..|.+...++-+..+ .....+...|.+..++|++..|...+.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~---------------~p~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE---------------QPVVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc---------------chHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455666667778888888999988866666554311 11333555566779999999999999999
Q ss_pred hcccCCCc
Q 011003 475 CESSVQKG 482 (496)
Q Consensus 475 l~~dp~~~ 482 (496)
.+.+|++.
T Consensus 145 ~~~~~~~~ 152 (398)
T PRK10747 145 AELADNDQ 152 (398)
T ss_pred HhcCCcch
Confidence 99999885
No 262
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=79.57 E-value=2.8 Score=46.58 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=58.2
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC-HHHHHHHHHHHhcccCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-~~~Ai~~~~~al~~dp~ 480 (496)
....+......++|++|++.-+++++. ++....++.-++.++..++. .++|-+++-.|.+++|+
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~---------------dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKE---------------DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhc---------------CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChh
Confidence 345667778889999999999999998 44456667777888888888 99999999999999999
Q ss_pred Ccchhcc
Q 011003 481 KGSGIHS 487 (496)
Q Consensus 481 ~~Ka~~r 487 (496)
|.=||--
T Consensus 70 nlLAWkG 76 (1238)
T KOG1127|consen 70 NLLAWKG 76 (1238)
T ss_pred hhHHHHH
Confidence 9877643
No 263
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=79.41 E-value=4.6 Score=38.27 Aligned_cols=81 Identities=11% Similarity=-0.068 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhhccCCCCChH--HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---cchhcccc
Q 011003 415 YARASKRYEKAVKYIEYDTSFGDE--EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK---GSGIHSDG 489 (496)
Q Consensus 415 y~~A~~~Y~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~---~Ka~~rrg 489 (496)
-..|+..+++.++.++...-..+. -...++.....--++.|.-|++.++|..|+..++.+++.-|+. .+|+++..
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~ 219 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME 219 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 356778888888877654322221 1234455556666788999999999999999999999987764 57899888
Q ss_pred cccccc
Q 011003 490 RFRFGR 495 (496)
Q Consensus 490 ~a~~~l 495 (496)
.+|..|
T Consensus 220 ~ay~~l 225 (243)
T PRK10866 220 NAYRQL 225 (243)
T ss_pred HHHHHc
Confidence 888554
No 264
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=79.38 E-value=3.4 Score=40.27 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=15.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 453 NNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 453 N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
-++..++..|+|..|++..+.+++.||..
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 34444555555555555555555555543
No 265
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.36 E-value=2.7 Score=24.39 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.1
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHH
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCT 472 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~ 472 (496)
.+++|+|.++..+|++.+|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357899999999999999998765
No 266
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.25 E-value=4.1 Score=38.63 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccc
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSD 488 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rr 488 (496)
.+++..|.-.|+.-..-+. ....+++-+|.|++.+++|.+|..-...||.-+++++..|-+.
T Consensus 186 gek~qdAfyifeE~s~k~~---------------~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTP---------------PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred chhhhhHHHHHHHHhcccC---------------CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 3446677777766554211 1266788899999999999999999999999999988776543
No 267
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.63 E-value=1.3 Score=38.03 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=39.1
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
.-...+|...+..++|.-|++-++.++..||+|..|..-++.||.+|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999998888765
No 268
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.93 E-value=3.6 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.5
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~ 430 (496)
+-..|..+++.|++.+|+..|++.++..+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44578888999999999999999998654
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.64 E-value=2.8 Score=24.08 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.8
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKY 428 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~ 428 (496)
+...|..++..+++..|+..|.++++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 456788899999999999999999976
No 270
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.22 E-value=3.6 Score=27.51 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.6
Q ss_pred hhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 451 NLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 451 ~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.+|+|.+|+++|++..|..-.++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 271
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=77.09 E-value=12 Score=38.54 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=50.4
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
.+.+.+|.....+|-...+-..|..|.+.+...... .+.....+.-.|.++..+|++..|.+...++.+..|
T Consensus 78 ~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p 149 (409)
T TIGR00540 78 GRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG 149 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 334446666666666666666666666665332111 111234455678889999999999999999999988
Q ss_pred CCc
Q 011003 480 QKG 482 (496)
Q Consensus 480 ~~~ 482 (496)
++.
T Consensus 150 ~~~ 152 (409)
T TIGR00540 150 NDN 152 (409)
T ss_pred cCc
Confidence 874
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.19 E-value=1.4 Score=43.35 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK--- 481 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~--- 481 (496)
.||.+..-+.|++|++.|++|+++...... .-+...++..++.-|-.++++.+|+-...+|+++-.+.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~ 198 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDD---------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK 198 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCC---------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC
Confidence 677788888999999999999998654211 22336678889999999999999999999998875332
Q ss_pred -------cchhccccccccc
Q 011003 482 -------GSGIHSDGRFRFG 494 (496)
Q Consensus 482 -------~Ka~~rrg~a~~~ 494 (496)
.-++|+++.||+.
T Consensus 199 d~~~kyr~~~lyhmaValR~ 218 (518)
T KOG1941|consen 199 DWSLKYRAMSLYHMAVALRL 218 (518)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 1256666666553
No 273
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.59 E-value=6.3 Score=37.19 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh-ccCHHHHHHHHHHHhc
Q 011003 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKKCE 476 (496)
Q Consensus 415 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k-l~~~~~Ai~~~~~al~ 476 (496)
-..|...|++|+.+...... ..++++..+.+|.|..|+. +++..+|++-+.+|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~-------~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELP-------PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-------TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccC-------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999998654322 2278999999999988865 8999999999988875
No 274
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.50 E-value=7.1 Score=39.22 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=52.3
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
+.+-|..+...|++..|++.|.++-.||.. ....+..+.|.-.+-+-+++|......-++|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 445677778899999999999998888654 3344677888889999999999999999888765
No 275
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.50 E-value=3.7 Score=38.12 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=47.3
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
++.++.--...=+..|+..|.+|+..-... ... .....+..=+|..+.++|++++|+..+.+++..- +..
T Consensus 129 R~~~~~~~E~~fl~~Al~~y~~a~~~e~~~-~~~--------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~-~~s 198 (214)
T PF09986_consen 129 RDLGDEENEKRFLRKALEFYEEAYENEDFP-IEG--------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK-KAS 198 (214)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHhCcCC-CCC--------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC-CCC
Confidence 334443334444666777777766542110 000 1113345558888999999999999999999764 333
Q ss_pred c--hhcccccc
Q 011003 483 S--GIHSDGRF 491 (496)
Q Consensus 483 K--a~~rrg~a 491 (496)
+ .+..+|+-
T Consensus 199 ~~~~l~~~AR~ 209 (214)
T PF09986_consen 199 KEPKLKDMARD 209 (214)
T ss_pred CcHHHHHHHHH
Confidence 3 55565543
No 276
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=74.61 E-value=4.6 Score=39.39 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=49.5
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH-HHHHHHHHhcccCC
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ-AEKLCTKKCESSVQ 480 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~-Ai~~~~~al~~dp~ 480 (496)
+-..+......|+|.+|.....+|+.. ++....++.|++.|...+|+..+ +.+..++.-..+|+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~---------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEK---------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC----------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh---------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 456778888999999999999999875 33346688999999999999954 55566666667887
Q ss_pred Cc
Q 011003 481 KG 482 (496)
Q Consensus 481 ~~ 482 (496)
++
T Consensus 269 h~ 270 (290)
T PF04733_consen 269 HP 270 (290)
T ss_dssp SH
T ss_pred Ch
Confidence 64
No 277
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.93 E-value=8.5 Score=24.46 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=24.3
Q ss_pred hhHHHHHHHhccCHHHHHHH--HHHHhcccCCC
Q 011003 451 NLNNAACKLKLKDYKQAEKL--CTKKCESSVQK 481 (496)
Q Consensus 451 ~~N~a~~~~kl~~~~~Ai~~--~~~al~~dp~~ 481 (496)
+.-+|.++...|+|.+|++. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44578899999999999999 55888888765
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=72.15 E-value=6 Score=35.07 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=46.6
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC-Ccchhc
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ-KGSGIH 486 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~-~~Ka~~ 486 (496)
.++..+++..|+..|.+++..... .......+.++...+...+++..|+....+++...+. ...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 566777777777777777552110 0122333444444477788888888888888888877 566666
Q ss_pred ccccccc
Q 011003 487 SDGRFRF 493 (496)
Q Consensus 487 rrg~a~~ 493 (496)
..+.++.
T Consensus 207 ~~~~~~~ 213 (291)
T COG0457 207 NLGLLYL 213 (291)
T ss_pred HhhHHHH
Confidence 6655543
No 279
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=3.8 Score=39.48 Aligned_cols=49 Identities=4% Similarity=-0.242 Sum_probs=37.1
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
++....-|.=++.+|+.++++..|...+.+|+++.|+|+..+.-.|.++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL 200 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL 200 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3344555677888899999999999999999999998877665555444
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.81 E-value=2.1 Score=41.92 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
+.-+..+++.+.+.++...|++-|..|+.+ ++....-|--|..++.-+++|.+|-++...|+++|
T Consensus 148 a~l~~kr~sv~lkl~kp~~airD~d~A~ei---------------n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 148 AILYAKRASVFLKLKKPNAAIRDCDFAIEI---------------NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhcccccceeeeccCCchhhhhhhhhhcc---------------CcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 334456889999999999999999999997 33335555566777788999999999999999886
Q ss_pred C
Q 011003 479 V 479 (496)
Q Consensus 479 p 479 (496)
-
T Consensus 213 ~ 213 (377)
T KOG1308|consen 213 Y 213 (377)
T ss_pred c
Confidence 4
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.72 E-value=1.9 Score=39.50 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=61.1
Q ss_pred HHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 396 ~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
.+.+..+.=-|--+...|+|..|...|...+++ ++..--.++||+.+++--|+|.-|.++..+--
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---------------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---------------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---------------CCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 344556666777888999999999999998887 55567788999999999999999999999999
Q ss_pred cccCCCc
Q 011003 476 ESSVQKG 482 (496)
Q Consensus 476 ~~dp~~~ 482 (496)
+-||+++
T Consensus 161 Q~D~~DP 167 (297)
T COG4785 161 QDDPNDP 167 (297)
T ss_pred hcCCCCh
Confidence 9999875
No 282
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=69.94 E-value=9.9 Score=36.28 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=45.5
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccccc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRFGR 495 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~~l 495 (496)
......+..|+=+.++..++|..|+.+.++.|.++|+++-.+--||.+|.++
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql 228 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQL 228 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhc
Confidence 5566788889999999999999999999999999999998888888887765
No 283
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.07 E-value=16 Score=34.19 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=45.7
Q ss_pred HHHHHhhhHHhhhhhHh-cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 395 KIEAAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk-~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
+.+.|..+-.++...|| +++|..|-..|.+|..+--...+ ......+|.-.+.||-|. +..+|+.+.++
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s---------khDaat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS---------KHDAATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC---------chhHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 55566666665555554 67788888888888776322111 112345566666666665 77777777777
Q ss_pred Hhccc
Q 011003 474 KCESS 478 (496)
Q Consensus 474 al~~d 478 (496)
++++-
T Consensus 99 aieIy 103 (288)
T KOG1586|consen 99 AIEIY 103 (288)
T ss_pred HHHHH
Confidence 77663
No 284
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=25 Score=38.95 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=58.5
Q ss_pred HHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc---C----------------------------CCCCh---HHH
Q 011003 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---D----------------------------TSFGD---EEK 440 (496)
Q Consensus 395 ~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~---~----------------------------~~~~~---~~~ 440 (496)
++....+..++|-++++.|+|.+|+++|..+|-.+.- + ++..+ ++.
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 4677788889999999999999999999888754311 0 01111 111
Q ss_pred HHH---------HHHH-HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 441 KQA---------KALK-VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 441 ~~~---------~~~~-~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
-++ ++.. ..++.-.-..+.|+++|+.|-..|.+.|++-|.-..|
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 111 1111 1122223346789999999999999999998865433
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=67.36 E-value=12 Score=36.24 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=49.7
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHHHHHHHHHHhcc
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKKCES 477 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~Ai~~~~~al~~ 477 (496)
..++|++..|...|.|+-.++.. .+ .......+..++|.+...++.+ +|.+|+....+|+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~---~~----~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNS---LD----PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhc---CC----cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45789999999999999887631 11 1223456888999999999999 999999999998877
No 286
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.29 E-value=5.6 Score=40.45 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 422 YEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 422 Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
|..||+.++...-....-...+.+...+++...+-||+.+++|.+|++.+..+|-.
T Consensus 138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554432111112334456677888999999999999999999999998743
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=64.84 E-value=15 Score=30.07 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.2
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhh
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYI 429 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~ 429 (496)
++..+|++||+.+|++.-+..+.--
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h 26 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH 26 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc
Confidence 5678999999999999998888653
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=64.64 E-value=18 Score=37.56 Aligned_cols=104 Identities=17% Similarity=0.073 Sum_probs=64.2
Q ss_pred ccChHHHHHHHhhhHHhhhhh---H------hcccHHHHHHHHHHHhhhhccCCCCCh------HHHH----HHHHHHHH
Q 011003 389 DMNTEEKIEAAGKKKEQGNTL---F------KAGKYARASKRYEKAVKYIEYDTSFGD------EEKK----QAKALKVA 449 (496)
Q Consensus 389 ~~~~~e~~~~a~~~k~~Gn~~---f------k~~~y~~A~~~Y~~al~~~~~~~~~~~------~~~~----~~~~~~~~ 449 (496)
+-++..+++.|.+-.+.-..+ | ......+|.+.|++|++.-+..-..+. ...+ .--....-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 557777777766554433321 1 234478999999999987543211111 0101 01112344
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhcccCC--Ccchhccccccc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCESSVQ--KGSGIHSDGRFR 492 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~--~~Ka~~rrg~a~ 492 (496)
+...+|.|.-|+|+.++|++.+...++..|. +.-.++..-.+|
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 5567999999999999999999999988774 344444444443
No 289
>PRK04841 transcriptional regulator MalT; Provisional
Probab=64.12 E-value=22 Score=40.57 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=39.7
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.++..|++.+|...|.+++....... .......++.|+|.+++..|++.+|...+++++.+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g---------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHD---------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhc---------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555555555555554422110 01122446789999999999999999999999886
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.02 E-value=26 Score=33.04 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccC
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~ 432 (496)
.+++-...+.-+-+.|++.|++++..++.+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 345555566677888999999999887543
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=62.26 E-value=11 Score=24.39 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhh
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYI 429 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~ 429 (496)
-..|..-...++|.+|+.-|.+||++.
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 345666778899999999999999984
No 292
>PF15469 Sec5: Exocyst complex component Sec5
Probab=61.98 E-value=25 Score=31.51 Aligned_cols=80 Identities=19% Similarity=0.078 Sum_probs=49.1
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCC-------CChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTS-------FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.-..+.++|+|..|+..|.+|-.++..... ...+-...+...+..++..+..+. ....+....+...++|
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~---~s~~~~~~~i~~Ll~L 168 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP---SSQEEFLKLIRKLLEL 168 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhC
Confidence 344455899999999999999999865421 111222333444444444443333 3466777777888888
Q ss_pred cCCCcchhcc
Q 011003 478 SVQKGSGIHS 487 (496)
Q Consensus 478 dp~~~Ka~~r 487 (496)
++..--+|++
T Consensus 169 ~~~~dPi~~~ 178 (182)
T PF15469_consen 169 NVEEDPIWYW 178 (182)
T ss_pred CCCCCHHHHH
Confidence 8865445543
No 293
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=17 Score=34.06 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=50.3
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
...++-.+++..+|..+...-.+|+.+ .+..+..+.-+.+|.+..+.|.+||....+|..+
T Consensus 47 ~tnralchlk~~~~~~v~~dcrralql---------------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 47 YTNRALCHLKLKHWEPVEEDCRRALQL---------------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHHHhc---------------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 345566677778888888888888887 6666888999999999999999999999999654
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.99 E-value=19 Score=32.79 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=41.3
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHH
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai 468 (496)
.+|-+.+-.+|+..|.++|++...+..+ ...++.-+|..|.++++++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~-----------n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNF-----------NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHhcchhhhh
Confidence 4667889999999999999987665333 3778888999999999999874
No 295
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=59.94 E-value=27 Score=33.10 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh-ccCHHHHHHHHHHHhc
Q 011003 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKKCE 476 (496)
Q Consensus 415 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k-l~~~~~Ai~~~~~al~ 476 (496)
-+.|...|++|+.+...... ..++.+..+.+|.|..|+. +++..+|+..+.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~-------pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELP-------PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCC-------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999988543211 2278889999999999886 6888888877776654
No 296
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=59.33 E-value=24 Score=28.88 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=39.6
Q ss_pred hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
|.--...|+.+|+++..+.+ ..+..+.++|.=+--..-|++|..-|.++|.+.
T Consensus 56 k~~yLl~sve~~s~a~~Lsp---------------~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 56 KFRYLLGSVECFSRAVELSP---------------DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhHHHHHHHhccCh---------------hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 33346788899999988833 336777777766556677999999999999764
No 297
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=59.25 E-value=13 Score=39.73 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=59.7
Q ss_pred hhhhHhcccHHHHHHHHHHHhhhhccCCC---------CChHHHHHHHHHHHHh---------hhHHHHHHHhccCHHHH
Q 011003 406 GNTLFKAGKYARASKRYEKAVKYIEYDTS---------FGDEEKKQAKALKVAC---------NLNNAACKLKLKDYKQA 467 (496)
Q Consensus 406 Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~---------~~~~~~~~~~~~~~~~---------~~N~a~~~~kl~~~~~A 467 (496)
+...++.|+...|.....+|..+.+++.+ ....+.+..+.+.... |.--+..---+++..+|
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence 44567789999999999999887554311 1112233333333332 22333333347889999
Q ss_pred HHHHHHHhcccCCCcchhcccccccc
Q 011003 468 EKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 468 i~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
+..|+.+|+.-|+..|-|..+||.+-
T Consensus 671 ~rllEe~lk~fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 671 LRLLEEALKSFPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHhHHHH
Confidence 99999999999999999999998764
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.50 E-value=11 Score=37.08 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=59.8
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCC---CCCh---------H-HHHHHH----------HHHHHhhhHHHH
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGD---------E-EKKQAK----------ALKVACNLNNAA 456 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~---~~~~---------~-~~~~~~----------~~~~~~~~N~a~ 456 (496)
++.-..+..+|.+|++.+|...+.+.|+-++.+. +++. . ....+. +...-++-=.|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 5666778888999999999999999887654321 0000 0 011111 122333445789
Q ss_pred HHHhccCHHHHHHHHHHHhcccCCCcchhcc
Q 011003 457 CKLKLKDYKQAEKLCTKKCESSVQKGSGIHS 487 (496)
Q Consensus 457 ~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~r 487 (496)
|....|-|.+|.+.++++|++|+.+.=|..-
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHA 214 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHH
Confidence 9999999999999999999999976544333
No 299
>PRK04841 transcriptional regulator MalT; Provisional
Probab=58.36 E-value=30 Score=39.57 Aligned_cols=68 Identities=6% Similarity=-0.084 Sum_probs=52.8
Q ss_pred HhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCC
Q 011003 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 404 ~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~ 480 (496)
..+..+...|++.+|...|.+++....... .......++..+|.++.++|++.+|.....+|+++-..
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g---------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLR---------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 455556788999999999999998743211 12234567788999999999999999999999987643
No 300
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=57.46 E-value=27 Score=36.28 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
+.-+..+.+.|+.++|++.|...++..+.. ....++.|+..|++.++.|.++-.-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~-------------~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCcc-------------chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 446777789999999999999999875421 2356888999999999999887665555
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=56.22 E-value=20 Score=34.65 Aligned_cols=56 Identities=7% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 438 ~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
++...+.+....+|.-++..+.-.+++..++...++-++++|-+.++|.+.=.+|+
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45567788899999999999999999999999999999999999988887655544
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.91 E-value=23 Score=27.81 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=32.0
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
++........+|.+++..|+|.+|++.+-.+++.++++-.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 3444677888999999999999999999999999998743
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.75 E-value=12 Score=36.31 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
..+.+-+|.|.-..+.|+-++|..-+..||.++|+|+.++.+.|+.+
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~ 160 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR 160 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH
Confidence 33555678888889999999999999999999999999999888643
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.28 E-value=39 Score=30.67 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=43.3
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHH
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKK 474 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~a 474 (496)
...+.+..++..+++..|....+.++..-.+ ..+...+-.++|.+++.++.+++|+...+..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 3456777888899999999999998865211 3444555667777777777777777665543
No 305
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.76 E-value=62 Score=32.92 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh--ccCHHHHHHHHHHH
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKK 474 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k--l~~~~~Ai~~~~~a 474 (496)
..+.....++..+|.+++|..|.+.+...+.-++.. .. ...+.++|.+|.. .-+|.+|.+..++.
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~-----------~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGR-----------EE--YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-----------hh--HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345667778889999999999999999988743221 11 4667888888886 66788999988887
Q ss_pred hcc
Q 011003 475 CES 477 (496)
Q Consensus 475 l~~ 477 (496)
+..
T Consensus 196 ~~~ 198 (379)
T PF09670_consen 196 LKR 198 (379)
T ss_pred HHH
Confidence 764
No 306
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=49.79 E-value=48 Score=33.33 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=68.2
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc--------------CCCCCh--HHHHHHH----HHHHHhhhH
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY--------------DTSFGD--EEKKQAK----ALKVACNLN 453 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~--------------~~~~~~--~~~~~~~----~~~~~~~~N 453 (496)
.|...+...-.+|-..+-.|+|.+|.+.-.++-+.-+. ...... .-..++. ......+.-
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 45667777777888888899999999988886654211 000000 0001111 223556677
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccccccc
Q 011003 454 NAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFRF 493 (496)
Q Consensus 454 ~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~~ 493 (496)
|+...+..+++..|....+++++..|.|+.++--+.++|+
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 8888899999999999999999999999876655445444
No 307
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=48.35 E-value=29 Score=38.43 Aligned_cols=43 Identities=9% Similarity=-0.191 Sum_probs=33.3
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGR 490 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~ 490 (496)
...|..+..++.+.++++.|...+++.++++|++...|...+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHH
Confidence 3457778888888999999999999999999988765544433
No 308
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=47.87 E-value=28 Score=20.19 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=23.7
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
.|+++-.+|.+.+++++|.+-+++-.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4778889999999999999998876543
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=58 Score=34.72 Aligned_cols=76 Identities=22% Similarity=0.167 Sum_probs=51.4
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc---cCCCCChHH-HHHH-HHHHHHhhhHHH-HHHHhccCHHHHHHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIE---YDTSFGDEE-KKQA-KALKVACNLNNA-ACKLKLKDYKQAEKLCT 472 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~---~~~~~~~~~-~~~~-~~~~~~~~~N~a-~~~~kl~~~~~Ai~~~~ 472 (496)
..++|+.|+.+.+++++..|-+++.+|..+-. ......+.+ ...+ ...+..-.+|.| .||+++|++++|++-..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 34678899999999999999999999987521 112222222 2222 223344466776 68999999999988765
Q ss_pred HH
Q 011003 473 KK 474 (496)
Q Consensus 473 ~a 474 (496)
+.
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 54
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.26 E-value=26 Score=37.09 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
..++-++.+|+-+.+...||+.+.+|++++|+|..
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 34566778888999999999999999999998864
No 311
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=44.16 E-value=61 Score=26.59 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=37.5
Q ss_pred ccccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (496)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~ 430 (496)
.+..++..-+..+..+..+|..+++.|+.+.|.-.|-+.+.+++
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34567777889999999999999999999999999999999884
No 312
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=44.13 E-value=49 Score=35.67 Aligned_cols=58 Identities=10% Similarity=-0.042 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.++.++|++...+||+.++.+ .++|+-+++.+-.+++.+.|.+.+..-++.-|+++--
T Consensus 664 ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 444555666666666554433 4555555555555555555555555555555555433
No 313
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.06 E-value=22 Score=33.96 Aligned_cols=67 Identities=12% Similarity=-0.034 Sum_probs=53.1
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcc
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHS 487 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~r 487 (496)
.+...+++..|.+.-.+.+.+.+.+ ..-..-|+.+|.+++-+.-|+.+....++.-|+..-|-.-
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~d---------------p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPED---------------PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCC---------------hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 4557788999988888888874443 3334569999999999999999999999999988776655
Q ss_pred cc
Q 011003 488 DG 489 (496)
Q Consensus 488 rg 489 (496)
|+
T Consensus 255 r~ 256 (269)
T COG2912 255 RA 256 (269)
T ss_pred HH
Confidence 54
No 314
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.37 E-value=25 Score=36.37 Aligned_cols=53 Identities=19% Similarity=0.045 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 439 EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 439 ~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
..++++.++..+|.|+|.+-+.+++.-.|+..+++.|++ |+..|+|-..|..|
T Consensus 500 ~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiY 552 (696)
T KOG2471|consen 500 AFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIY 552 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 346778899999999999999999999999999999987 56777776665444
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.92 E-value=83 Score=34.92 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.7
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
.++-++.-|+.+|++|+|++|...|-++|.+++-
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 4556788999999999999999999999988753
No 316
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.90 E-value=50 Score=24.94 Aligned_cols=36 Identities=14% Similarity=-0.086 Sum_probs=23.0
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHh-------cccCCCcc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKC-------ESSVQKGS 483 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al-------~~dp~~~K 483 (496)
..-+..+|.-+=+.|++.+|+.++.+++ ...|++.+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3445666666677777776666666555 45677654
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=41.59 E-value=44 Score=31.83 Aligned_cols=46 Identities=15% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 418 A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
|.+.|.+|+.+++.. =..|+.+|..+.-.+++-.|+.+|-++|-..
T Consensus 1 A~~~Y~~A~~l~P~~---------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---------------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTB---------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCC---------------CCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 788999999997654 4567888888888888888888888887543
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=40.03 E-value=25 Score=37.23 Aligned_cols=72 Identities=14% Similarity=-0.026 Sum_probs=57.6
Q ss_pred HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489 (496)
Q Consensus 410 fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg 489 (496)
-..|+-..|+++..+|+...+. ..-.-..|+|...++-+-..+|-...+++|.++.+.+--+|-.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~--------------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPL--------------QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred eecCCcHHHHHHHHHHhccChh--------------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 3578888899999999876321 11234679999999999999999999999999987788888888
Q ss_pred cccccc
Q 011003 490 RFRFGR 495 (496)
Q Consensus 490 ~a~~~l 495 (496)
++++.|
T Consensus 684 ~~~l~l 689 (886)
T KOG4507|consen 684 NAYLAL 689 (886)
T ss_pred hhHHHH
Confidence 887764
No 319
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.27 E-value=61 Score=27.01 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.9
Q ss_pred hHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 392 ~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
.+++.+...+--..|..+..+|++.+|+.++.+|+..+..
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 5666677788889999999999999999999999998754
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.60 E-value=64 Score=34.68 Aligned_cols=71 Identities=25% Similarity=0.208 Sum_probs=53.6
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh----ccCHHHHHHHHHHHh
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKKC 475 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~Ai~~~~~al 475 (496)
-.+...|. +..++.+|.+.|..|.+.- ......++|.||.. ..+...|...+.+|-
T Consensus 332 g~~~~~g~---~~~d~~~A~~yy~~Aa~~G-----------------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 332 GVLYETGT---KERDYRRAFEYYSLAAKAG-----------------HILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHHHHcCC---ccccHHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 34444555 5578899999999998752 26677889999986 467899999999998
Q ss_pred cccCCCcchhccccccc
Q 011003 476 ESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 476 ~~dp~~~Ka~~rrg~a~ 492 (496)
+.+ ++.|.++++..+
T Consensus 392 ~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 392 EKG--NPSAAYLLGAFY 406 (552)
T ss_pred Hcc--ChhhHHHHHHHH
Confidence 887 677777776544
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=38.44 E-value=82 Score=31.89 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=50.0
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc------
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG------ 482 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~------ 482 (496)
....|+|..|++.-........ -+....+..+..++.-.|+..+.. +...|..++.+++++.|+-+
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~v-------ie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKV-------IEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHh-------hchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHH
Confidence 4567778877777665544311 012233555666666666666554 48999999999999999874
Q ss_pred -chhccccccc
Q 011003 483 -SGIHSDGRFR 492 (496)
Q Consensus 483 -Ka~~rrg~a~ 492 (496)
++||+-+...
T Consensus 270 Aralf~d~~~r 280 (531)
T COG3898 270 ARALFRDGNLR 280 (531)
T ss_pred HHHHHhccchh
Confidence 6777665543
No 322
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.05 E-value=46 Score=34.91 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=54.1
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
++..+...|+-+.|+..++.+++ ...+.....++.-+|.|+.-+.+|..|-.+|+...++. +|.+|
T Consensus 273 ~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a 338 (546)
T KOG3783|consen 273 EARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHA 338 (546)
T ss_pred HHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHH
Confidence 34444455666666666666665 23477889999999999999999999999999988875 89999
Q ss_pred hccc
Q 011003 485 IHSD 488 (496)
Q Consensus 485 ~~rr 488 (496)
+|+-
T Consensus 339 ~Y~Y 342 (546)
T KOG3783|consen 339 FYTY 342 (546)
T ss_pred HHHH
Confidence 8853
No 323
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.96 E-value=61 Score=31.43 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=41.8
Q ss_pred hHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHH
Q 011003 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (496)
Q Consensus 402 ~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~ 470 (496)
...++..+...+++.+|...+..++...+.. ..+..-+|.||+.+|+.+.|..-
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chHHHHHHHHHHHcCChHHHHHH
Confidence 4567888999999999999999999985432 55566788888888887655443
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.95 E-value=1.5e+02 Score=28.94 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=50.1
Q ss_pred cccccChHHHHHHH--hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC
Q 011003 386 ESWDMNTEEKIEAA--GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (496)
Q Consensus 386 ~~~~~~~~e~~~~a--~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~ 463 (496)
.+|.-+..++++.. .-+-..+..+.+.|.+.+|+..-++++.+ +++....+--+-+.+.++|+
T Consensus 264 y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl---------------dpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 264 YPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL---------------DPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc---------------ChhhhHHHHHHHHHHHHhcc
Confidence 35665666666543 22334455566899999999999999998 55555555556667788888
Q ss_pred HHHHHHHHHH
Q 011003 464 YKQAEKLCTK 473 (496)
Q Consensus 464 ~~~Ai~~~~~ 473 (496)
--.|++.+++
T Consensus 329 ~is~~khyer 338 (361)
T COG3947 329 EISAIKHYER 338 (361)
T ss_pred chhhhhHHHH
Confidence 7777776654
No 325
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.51 E-value=38 Score=34.97 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=50.6
Q ss_pred hcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcc
Q 011003 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHS 487 (496)
Q Consensus 411 k~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~r 487 (496)
.+++++.|...|.+||.. +.-...+++.-|.|-||.+.-+.|..-.++|+.+-|.--+-||.
T Consensus 85 sq~e~~RARSv~ERALdv---------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDV---------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred hHHHHHHHHHHHHHHHhc---------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 467788888888888876 44558889999999999999999999999999888876555553
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.47 E-value=1.4e+02 Score=27.65 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=45.9
Q ss_pred hhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccC-------HHHHHHHHHHHhccc
Q 011003 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKKCESS 478 (496)
Q Consensus 408 ~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~-------~~~Ai~~~~~al~~d 478 (496)
.+-....+.+|++.|.-|+-....... -....+.+++.+|-+|--+++ ...|++.+.+|++..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~--------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKE--------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 566677899999999999976432211 133668889999999999888 566777777776554
No 327
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=36.15 E-value=47 Score=34.80 Aligned_cols=38 Identities=13% Similarity=-0.083 Sum_probs=33.3
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
++...++|.-||.|+..++.+.+|+.+...+....|.+
T Consensus 441 n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 77888999999999999999999999888777777743
No 328
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.69 E-value=85 Score=27.41 Aligned_cols=72 Identities=18% Similarity=0.161 Sum_probs=47.4
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
........+|.+++.|+.+.|.+..+-+-.-+......- .-....-..++|..+++.|+|.+|......|++
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~l-------PL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALL-------PLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEE-------EHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeC-------CHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345677899999999999999887765543221100000 001134456899999999999999999888874
No 329
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=35.10 E-value=71 Score=18.88 Aligned_cols=27 Identities=19% Similarity=-0.069 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
.|+.+-.++.+.++++.|+...+.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888899999999999998887554
No 330
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=33.41 E-value=98 Score=29.89 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK 481 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~ 481 (496)
.++.+.|...|+++++.+..+ ..+++.-..-++++++.+.|..-+++++..-|..
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~---------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSD---------------PDFWLEYLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred CCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 566777888999988886543 4445555556677888888888888888765443
No 331
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.27 E-value=1.1e+02 Score=24.64 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhh
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~ 428 (496)
.+.+.+.+.-.+|-..+..|||+.|.+.-.++-+.
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45567777788888899999999999999999776
No 332
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.04 E-value=1.6e+02 Score=28.00 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhhccCCCCChH--HHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCC---cchhccccc
Q 011003 416 ARASKRYEKAVKYIEYDTSFGDE--EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQK---GSGIHSDGR 490 (496)
Q Consensus 416 ~~A~~~Y~~al~~~~~~~~~~~~--~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~---~Ka~~rrg~ 490 (496)
..|+..++.-+.-+++++-..+. ....++......-...|.-|+|.+.|-.|+...+.+++.-|+- .+||++...
T Consensus 133 ~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~e 212 (254)
T COG4105 133 RAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEE 212 (254)
T ss_pred HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 45555555555555544322222 2233444445556677888999999999999999999875543 467777777
Q ss_pred ccccc
Q 011003 491 FRFGR 495 (496)
Q Consensus 491 a~~~l 495 (496)
+|..+
T Consensus 213 aY~~l 217 (254)
T COG4105 213 AYYAL 217 (254)
T ss_pred HHHHh
Confidence 76654
No 333
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.94 E-value=1.1e+02 Score=28.81 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 416 ~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
...+...++|+..+..... ..+...+...+|.-|+++|+|.+|+..++.++..
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556666777666543211 4455677778999999999999999999998543
No 334
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=32.83 E-value=1.1e+02 Score=23.17 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=33.1
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhh
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~ 429 (496)
..++-++.|....+.|..++++|++..|+.++.-|--+|
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999998776654
No 335
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.79 E-value=88 Score=28.19 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=30.0
Q ss_pred HHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcch
Q 011003 446 LKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSG 484 (496)
Q Consensus 446 ~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka 484 (496)
.+..+.--..+++++.|+|++|.+-.++... ||++.|-
T Consensus 109 i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 109 IRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3344444567889999999999999999998 8877663
No 336
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.58 E-value=81 Score=18.45 Aligned_cols=27 Identities=15% Similarity=-0.068 Sum_probs=22.7
Q ss_pred hhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 450 CNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 450 ~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
.|+.+-.+|.+.+++.+|++.+.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366677889999999999999998754
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=32.21 E-value=1.5e+02 Score=29.08 Aligned_cols=72 Identities=18% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHHHHHhhhHHhhhhhHhc------ccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhc------
Q 011003 394 EKIEAAGKKKEQGNTLFKA------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL------ 461 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~------~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl------ 461 (496)
.....+..+...|+..... +++..++..|.+|+++.+.. ...+.+.|..+.++
T Consensus 247 ~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------~k~~~~~a~~~~~~~~~~~~ 311 (352)
T PF02259_consen 247 SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW---------------EKAWHSWALFNDKLLESDPR 311 (352)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH---------------HHHHHHHHHHHHHHHHhhhh
Confidence 3444556666666666655 89999999999999984322 33444444444332
Q ss_pred -----------cCHHHHHHHHHHHhcccCC
Q 011003 462 -----------KDYKQAEKLCTKKCESSVQ 480 (496)
Q Consensus 462 -----------~~~~~Ai~~~~~al~~dp~ 480 (496)
.--..|+..+-+||.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 312 EKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 1124588889999988877
No 338
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=31.76 E-value=61 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=18.3
Q ss_pred hhHHHHHHhccccCcEEEEEEcCC
Q 011003 328 IDGLDRAVITMKKNEVALLTIAPE 351 (496)
Q Consensus 328 ~~gle~~l~~M~~Ge~~~v~i~~~ 351 (496)
-+-+..|+..|+.||++.|++.+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 356889999999999999998764
No 339
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=31.67 E-value=33 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcccCCCcchhcccc
Q 011003 466 QAEKLCTKKCESSVQKGSGIHSDG 489 (496)
Q Consensus 466 ~Ai~~~~~al~~dp~~~Ka~~rrg 489 (496)
+.++.+.++|..+|.|--||.-|-
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~ 24 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRR 24 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHH
Confidence 357889999999999998886553
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.98 E-value=1.5e+02 Score=31.12 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhc
Q 011003 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 417 ~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
+-...|.+|+.-++.+ ..+++|-..-.-|-+.+.+.-..|.++|...|+|+.-|-
T Consensus 89 rIv~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI 143 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWI 143 (568)
T ss_pred HHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHH
Confidence 3345677776665544 555555555455555566666667777777666665443
No 341
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=30.95 E-value=1.3e+02 Score=30.47 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=49.8
Q ss_pred hhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcc
Q 011003 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCES 477 (496)
Q Consensus 401 ~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~ 477 (496)
-+.--|--+++.+.|.+|-..++.|+++-.+ ..-+.=+|.++.++++..+|-+..+++|.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS----------------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3445678889999999999999999987332 444667899999999999999999998843
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.68 E-value=88 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=15.5
Q ss_pred hHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 452 LNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 452 ~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
.+.|.-+=+.|+|.+|+..+.++++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445556777777777666654
No 343
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.23 E-value=1.2e+02 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.8
Q ss_pred ChHHHHHHHhhhHHhhhhhHhcc-cHHHHHHHHHHHhhhhcc
Q 011003 391 NTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEY 431 (496)
Q Consensus 391 ~~~e~~~~a~~~k~~Gn~~fk~~-~y~~A~~~Y~~al~~~~~ 431 (496)
+.+++.....+--..|..+...| ++.+|..++.+||..+..
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 56677777888889999999999 999999999999998754
No 344
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=1.8e+02 Score=30.42 Aligned_cols=85 Identities=21% Similarity=0.096 Sum_probs=59.6
Q ss_pred ccChHHHHHHHhhhHHhhhhh-HhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc-CHHH
Q 011003 389 DMNTEEKIEAAGKKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQ 466 (496)
Q Consensus 389 ~~~~~e~~~~a~~~k~~Gn~~-fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~-~~~~ 466 (496)
.+.+..+++ |.....-|.-+ +-..|++.|....++|..+.+..+.+ ...+-..++=+|.||.... .+..
T Consensus 37 ~~~is~~ve-art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~ 107 (629)
T KOG2300|consen 37 QFQISFLVE-ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPP 107 (629)
T ss_pred ccCChHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCch
Confidence 344444443 34444555555 45889999999999999876544322 3455566677888888887 8899
Q ss_pred HHHHHHHHhcccCCCc
Q 011003 467 AEKLCTKKCESSVQKG 482 (496)
Q Consensus 467 Ai~~~~~al~~dp~~~ 482 (496)
|..-..+||++-.+++
T Consensus 108 ~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 108 AKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999876655
No 345
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=30.07 E-value=1.4e+02 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.0
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhh
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKY 428 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~ 428 (496)
.+..+|+.|+|..|.+.-..+|+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456679999999999999999987
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=29.79 E-value=88 Score=29.11 Aligned_cols=64 Identities=13% Similarity=-0.084 Sum_probs=43.7
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcc
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGS 483 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~K 483 (496)
-..++.+.+...+|+..-..-++--+. ...+..-+=.-+.-.|+|++|+..|+-+-+++|+..+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt---------------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT---------------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc---------------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 344667778888888887777765222 1222222333345689999999999999999998765
No 347
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.77 E-value=82 Score=35.86 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=10.4
Q ss_pred CCcccEEEEcCccchhh
Q 011003 313 EEEQLFEFKTDEEQVID 329 (496)
Q Consensus 313 ~~~~~~~~~lg~~~~~~ 329 (496)
.+++-+.+.+++.+++|
T Consensus 319 rKGQVLsv~v~e~~IVp 335 (1666)
T KOG0985|consen 319 RKGQVLSVLVNEQNIVP 335 (1666)
T ss_pred hcceEEEEEecCcceeh
Confidence 35566666677666663
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.60 E-value=1.6e+02 Score=29.95 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHHHHHhhhHHHHHHHhcc--CHHHHHHHHHHHhcccCCCcchhc
Q 011003 444 KALKVACNLNNAACKLKLK--DYKQAEKLCTKKCESSVQKGSGIH 486 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~--~~~~Ai~~~~~al~~dp~~~Ka~~ 486 (496)
++....+++-|+.|..+.. +|+.=+.-|+++|+.||.|..||-
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~ 149 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH 149 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH
Confidence 5566778889999988754 489999999999999999998874
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.18 E-value=49 Score=38.39 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=57.5
Q ss_pred HHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 397 ~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
..+....+.|.....++.|.+|.+ -.+++.+++.. ...+.+....+|.-+|..+.+++++.+|+..|.+|+-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 556777788888888889998888 77777775432 2334566688899999999999999999999999864
Q ss_pred c
Q 011003 477 S 477 (496)
Q Consensus 477 ~ 477 (496)
+
T Consensus 1002 i 1002 (1236)
T KOG1839|consen 1002 I 1002 (1236)
T ss_pred e
Confidence 4
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.56 E-value=2.1e+02 Score=28.88 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=49.6
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccC--CCC-------Ch------HHHHHHHHHHHHhhhHHHHHHHhccC
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD--TSF-------GD------EEKKQAKALKVACNLNNAACKLKLKD 463 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~--~~~-------~~------~~~~~~~~~~~~~~~N~a~~~~kl~~ 463 (496)
+..+..-+..+..+|+++.|....++||-.++.. ..+ .. -...+ +...-.++.....+..+.|-
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e-NR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE-NRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc-chHHHHHHHHHHHHHHhcCc
Confidence 3444555555666666666666666666544311 011 00 01111 22233344455667778899
Q ss_pred HHHHHHHHHHHhcccCC-Cc
Q 011003 464 YKQAEKLCTKKCESSVQ-KG 482 (496)
Q Consensus 464 ~~~Ai~~~~~al~~dp~-~~ 482 (496)
|.-|++.|.-.|.+||. ++
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999998 44
No 351
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=21 Score=35.35 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCc
Q 011003 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKG 482 (496)
Q Consensus 444 ~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~ 482 (496)
+......|.-|++.++++.++.+|+++...+...+|++.
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 455577889999999999999999999999999999864
No 352
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.07 E-value=46 Score=19.34 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=22.9
Q ss_pred cCHHHHHHHHHHHhcccCCCcchhccccc
Q 011003 462 KDYKQAEKLCTKKCESSVQKGSGIHSDGR 490 (496)
Q Consensus 462 ~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~ 490 (496)
++++.|...+++++...|.+...|.+.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788899999999999988877765543
No 353
>PLN03077 Protein ECB2; Provisional
Probab=27.89 E-value=1e+02 Score=35.15 Aligned_cols=44 Identities=7% Similarity=-0.259 Sum_probs=30.0
Q ss_pred HhhhHHHHHHHhccCHHHHHHHHHHHhcccCCCcchhccccccc
Q 011003 449 ACNLNNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDGRFR 492 (496)
Q Consensus 449 ~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg~a~ 492 (496)
.+|.-+-.++...++.+.|...++++++++|++.-.|...+..|
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 33444444556677888888888888888888877666555443
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.84 E-value=1.6e+02 Score=25.25 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=33.2
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHH
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~ 456 (496)
.++.+++...+.+|+|+.|+..-..++..-+ +..+.+.+++.+|.-|+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp--------~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADP--------DNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999988887521 223445555555554443
No 355
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=27.50 E-value=1.8e+02 Score=28.21 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=49.3
Q ss_pred HHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 398 ~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
....+.+....+...++++.++...++.+.. ++..-.+|.-+=..|++.|+...||..|.+.=+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~---------------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL---------------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---------------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3556666777778888888888888888877 344456677777889999999999999987644
No 356
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=27.34 E-value=3.1e+02 Score=21.56 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.8
Q ss_pred hhhhhHhcccHHHHHHHHHHHhhhhc
Q 011003 405 QGNTLFKAGKYARASKRYEKAVKYIE 430 (496)
Q Consensus 405 ~Gn~~fk~~~y~~A~~~Y~~al~~~~ 430 (496)
.+..|=.+|.|..|...|..++....
T Consensus 6 ~Ae~LE~kGl~RRAA~rW~evm~~~~ 31 (90)
T PF06069_consen 6 KAEELEAKGLWRRAATRWLEVMDLAE 31 (90)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHcC
Confidence 45667788999999999999998754
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=26.87 E-value=3.9e+02 Score=30.15 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred HHhhhhhH-hcccHHHHH------HHHHHHhhhhccCC-CCChHHHH---------HHHHHHHHhhhHHHHHHHhccCHH
Q 011003 403 KEQGNTLF-KAGKYARAS------KRYEKAVKYIEYDT-SFGDEEKK---------QAKALKVACNLNNAACKLKLKDYK 465 (496)
Q Consensus 403 k~~Gn~~f-k~~~y~~A~------~~Y~~al~~~~~~~-~~~~~~~~---------~~~~~~~~~~~N~a~~~~kl~~~~ 465 (496)
..+...+| ...+|++|. +.|+.|+.++.... ..+++-.+ --...+..++-.+|.|++++|.|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 34444444 455677765 45677777664321 11111000 013345677888999999999999
Q ss_pred HHHHHHHHH
Q 011003 466 QAEKLCTKK 474 (496)
Q Consensus 466 ~Ai~~~~~a 474 (496)
.|-+-+++|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 999888776
No 358
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.25 E-value=2.2e+02 Score=27.14 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=13.3
Q ss_pred hcccHHHHHHHHHHHhhhhccC
Q 011003 411 KAGKYARASKRYEKAVKYIEYD 432 (496)
Q Consensus 411 k~~~y~~A~~~Y~~al~~~~~~ 432 (496)
..++|++|-.+..+|++..+..
T Consensus 43 nAk~feKakdcLlkA~~~yEnn 64 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENN 64 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666655443
No 359
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.15 E-value=2.4e+02 Score=28.63 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=47.1
Q ss_pred hhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHh--ccCHHHHHHHHHH
Q 011003 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTK 473 (496)
Q Consensus 400 ~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~k--l~~~~~Ai~~~~~ 473 (496)
.....++..+|++++|..|.+.|..++.-... .+ ......++-++|.||.. .=+|++|.+..++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-----~~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLS-----AV-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-----hh-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34445777899999999999999998875211 11 23446778888888886 5668888888874
No 360
>PHA02122 hypothetical protein
Probab=25.89 E-value=1.1e+02 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.9
Q ss_pred CCCCEEEEEEEEEEcCCCEEEe
Q 011003 54 ENGDEVEVHYTGTLLDGTQFDS 75 (496)
Q Consensus 54 ~~gd~V~v~Y~~~~~dg~~~~~ 75 (496)
..||.|.++|+... +|+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 57999999999886 7876643
No 361
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=1.7e+02 Score=30.65 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=33.0
Q ss_pred hHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHH
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~ 465 (496)
...-+.|+.|...|..|++..+. ..+.+.+-.|+|..|++.++-.
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~e 421 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAE 421 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHH
Confidence 33456677888888888877443 5567888999999999976643
No 362
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=24.88 E-value=68 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.1
Q ss_pred cccHHHHHHHccCcCCcEEEEEecC
Q 011003 91 NVIKGWDIGIKTMKKGENAVFTIPP 115 (496)
Q Consensus 91 ~~~~gle~~l~~m~~Ge~~~i~ip~ 115 (496)
.+..-+..||.|.++|+.+.+.+|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 3556799999999999999998764
No 363
>PF12854 PPR_1: PPR repeat
Probab=24.79 E-value=1.4e+02 Score=18.28 Aligned_cols=26 Identities=15% Similarity=-0.059 Sum_probs=21.6
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
...|+-+-.+|.|.|+.++|++-.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677788899999999999987764
No 364
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=24.47 E-value=1.8e+02 Score=32.46 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=42.9
Q ss_pred hHhcccHHHHHHHHHHHhhhhccC------CCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHh
Q 011003 409 LFKAGKYARASKRYEKAVKYIEYD------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKC 475 (496)
Q Consensus 409 ~fk~~~y~~A~~~Y~~al~~~~~~------~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al 475 (496)
+-..|+.+.|+..|++|-.++..- .+.++.....-+.-...+..-+|.-|-..|++.+|+..+++|-
T Consensus 922 lES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 335788999999999999887432 2222222222222223444457777778889999999888763
No 365
>PLN03077 Protein ECB2; Provisional
Probab=24.01 E-value=1.6e+02 Score=33.42 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=35.9
Q ss_pred hhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhc--ccCC
Q 011003 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCE--SSVQ 480 (496)
Q Consensus 407 n~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~--~dp~ 480 (496)
+.+.|.|++++|.+.|.+. .. ....|+.+..+|.+.|+.++|++.+++.++ +.|+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~---------------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EK---------------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CC---------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 4455677888887777654 11 145577777777777777777777776654 3454
No 366
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=23.84 E-value=79 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=18.7
Q ss_pred ccHHHHHHHccCcCCcEEEEEecC
Q 011003 92 VIKGWDIGIKTMKKGENAVFTIPP 115 (496)
Q Consensus 92 ~~~gle~~l~~m~~Ge~~~i~ip~ 115 (496)
...-|-.||.|.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 445799999999999999999764
No 367
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=23.54 E-value=2.7e+02 Score=28.89 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=44.8
Q ss_pred HhhhHHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHH
Q 011003 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (496)
Q Consensus 399 a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~ 473 (496)
.....+.+.-+|.+|+|.+|..+-....+..+ ...+|.=++.|.+..++|.+|..+..+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP----------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP----------------SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45667888999999999998655544444422 255677789999999999999987654
No 368
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.89 E-value=1.6e+02 Score=30.65 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhccc
Q 011003 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESS 478 (496)
Q Consensus 412 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~d 478 (496)
.+++..+...|.+-|.+ .+..+..+++-|.--..||+++.|..-++-|++..
T Consensus 450 L~efDRcRkLYEkfle~---------------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEF---------------SPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HhhHHHHHHHHHHHHhc---------------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 45566666666666655 44446666666766667777777777777776554
No 369
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.74 E-value=1.9e+02 Score=24.60 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=36.7
Q ss_pred ccChHHHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 389 ~~~~~e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
..+.++......+--+.|..|+.+|+++++..++..||..+..
T Consensus 71 ~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 71 PSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 4467777777888889999999999999999999999988643
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=1.8e+02 Score=28.30 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHhhhhhHhcccHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhccCHHH
Q 011003 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (496)
Q Consensus 403 k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~ 466 (496)
.+.+|.+.+..++.+|+..|.+.+.- ..+.+ ++.....-...+|+...|...|+|..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k-----g~s~d--ek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK-----GVSKD--EKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC-----CCChh--hhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 57789999999999999999998864 11111 11122223445678888888777643
No 371
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.90 E-value=2.4e+02 Score=28.35 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHhhhHHhhhhhHhcccHHHHHHHHHHHhhhhcc
Q 011003 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (496)
Q Consensus 394 e~~~~a~~~k~~Gn~~fk~~~y~~A~~~Y~~al~~~~~ 431 (496)
.+-..+.++...|+.++..++|..|...|+.|..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999998643
No 372
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=21.77 E-value=1.3e+02 Score=22.92 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=11.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhc
Q 011003 453 NNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 453 N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
|.|+++-..|+++.|+..+.++++
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHH
Confidence 333334444555555555555543
No 373
>PLN03218 maturation of RBCL 1; Provisional
Probab=21.52 E-value=2.2e+02 Score=33.30 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=19.5
Q ss_pred HHhhhHHHHHHHhccCHHHHHHHHHHHhc
Q 011003 448 VACNLNNAACKLKLKDYKQAEKLCTKKCE 476 (496)
Q Consensus 448 ~~~~~N~a~~~~kl~~~~~Ai~~~~~al~ 476 (496)
...|+.+..+|.+.+++++|++.+++..+
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566777777777777777777776543
No 374
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=21.50 E-value=3.5e+02 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=14.2
Q ss_pred EEEEEEEEEcCCCEEEeecCCCccEEEEe
Q 011003 59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTL 87 (496)
Q Consensus 59 V~v~Y~~~~~dg~~~~~t~~~~~p~~~~~ 87 (496)
|.+.++..+.....+.=++..++-+.|.+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v 30 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVV 30 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEE
Confidence 45666666655555555555555566655
No 375
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.31 E-value=2e+02 Score=36.00 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=30.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcccCCCcchhcccc
Q 011003 453 NNAACKLKLKDYKQAEKLCTKKCESSVQKGSGIHSDG 489 (496)
Q Consensus 453 N~a~~~~kl~~~~~Ai~~~~~al~~dp~~~Ka~~rrg 489 (496)
+.-.-+...|+|..|..+|+++++.+|++.|.+-+.=
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l 1490 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVL 1490 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHH
Confidence 3444556689999999999999999999988776543
No 376
>PRK12450 foldase protein PrsA; Reviewed
Probab=20.93 E-value=2.3e+02 Score=27.90 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred EEcCccchhhHHHHHHhccccCcEEEEEE---cCCCccC
Q 011003 320 FKTDEEQVIDGLDRAVITMKKNEVALLTI---APEYAFG 355 (496)
Q Consensus 320 ~~lg~~~~~~gle~~l~~M~~Ge~~~v~i---~~~~~yg 355 (496)
|.-|++.+++.|+.++..|++||...++- |-...||
T Consensus 195 f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~G 233 (309)
T PRK12450 195 FDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRT 233 (309)
T ss_pred ccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCc
Confidence 33355679999999999999999976552 4444444
No 377
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.73 E-value=1e+02 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.041 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhHHHHHHHhcc---CHHHHHHHHHHHhcccCCCcchhccccc
Q 011003 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKKCESSVQKGSGIHSDGR 490 (496)
Q Consensus 414 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~Ai~~~~~al~~dp~~~Ka~~rrg~ 490 (496)
++..|+..|.+|.+.=. ..+..+++.||+.-. ++..|.+.+..|-+. .++.|+||.|.
T Consensus 308 d~~~A~~~~~~aA~~g~-----------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~ 368 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-----------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLAL 368 (552)
T ss_pred cHHHHHHHHHHHHhcCC-----------------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence 78888888888887611 445667888888654 678999999888754 57888888887
Q ss_pred ccc
Q 011003 491 FRF 493 (496)
Q Consensus 491 a~~ 493 (496)
+|.
T Consensus 369 ~y~ 371 (552)
T KOG1550|consen 369 CYE 371 (552)
T ss_pred HHH
Confidence 764
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=20.55 E-value=2.7e+02 Score=27.45 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred HhcccHHHHHHHHHHHhhhhccCCC---CChHHHHHHHHHHHHhhhHHHHHHHhccCHHHHHHHHHHHhcccC
Q 011003 410 FKAGKYARASKRYEKAVKYIEYDTS---FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKKCESSV 479 (496)
Q Consensus 410 fk~~~y~~A~~~Y~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~Ai~~~~~al~~dp 479 (496)
|..-.+......|.++|+.+..... ........+......++.+++.-....|..+.|+....-.|+++=
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3455688999999999998754322 223455667788899999999999999999999999999999873
Done!