BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011007
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 71/315 (22%)
Query: 161 EAELVIFSAMDSLLQKTGLKPKDIDILI-VNCSLFSPTPSLSAMVINKYKLRSNIKSFNL 219
EA+ + + + L L DID++I V+C+ F PSL+A +IN+ S + +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 220 SGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGN-ERAMLLPNCLFRMGGA 278
+ +GC+AG +I+ A D +P +NA++V+ E + Y + LL N LF G A
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIA 201
Query: 279 AIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGE 338
A VVR G G+ L ++
Sbjct: 202 AA------------------VVR------------------GRGGTGVRLERN------- 218
Query: 339 ALKSNITTIGPLVLPASEQ-LLFLMTLIG-----RKIFNPKWKPYIPDFKQ-AFEH---- 387
G ++P +E +++ + G K +P P K+ A EH
Sbjct: 219 ---------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHGWDA 269
Query: 388 -----FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGR 442
+ +HAGG ++D+L L++ SR TL +GN +S+ + + + ++G
Sbjct: 270 SDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGG 329
Query: 443 MKKGDRVWQIAFGSG 457
+++G R FG G
Sbjct: 330 VEEGARGLLAGFGPG 344
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 131/312 (41%), Gaps = 50/312 (16%)
Query: 159 RGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFN 218
+G AEL +A+ ++ ++ G I LIV C P + L ++K F
Sbjct: 96 KGVAELGKEAALKAI-KEWGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFM 154
Query: 219 LSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMG 276
+GC AG + LA+D+ + + + ++V +E+ T + +E + ++ LF G
Sbjct: 155 FYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCFRGPSETHLDSMIGQALFGDG 214
Query: 277 GAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDK--AYRCVFEEEDKEGKVGISLSKDLMA 334
AA+ GAD R +FE + + + A
Sbjct: 215 AAAVIV----------------------GADPDLTVERPIFELVSTAQTI---VPESHGA 249
Query: 335 IAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKI---FNPKWKPY-IPDFKQAFEHFCI 390
I G L+S ++ +P TLI I + + P I D+ F +
Sbjct: 250 IEGHLLESGLSFHLYKTVP---------TLISNNIKTCLSDAFTPLNISDWNSLF--WIA 298
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKG 446
H GG A++D++ + L E ++ +R L +GN SS+++++ M + +K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 447 DRV-WQIAFGSG 457
+ + W + FG G
Sbjct: 359 EGLEWGVLFGFG 370
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 47/291 (16%)
Query: 178 GLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDL 237
GL I LI + P ++ L ++K + L G +AG + LA+DL
Sbjct: 123 GLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDL 182
Query: 238 LQVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKY 294
+ + S ++V +EI ++ NE + L+ LF G AA I +
Sbjct: 183 AENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIF 242
Query: 295 RLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPA 354
+V +T +KA + +EG + L +D+ PL
Sbjct: 243 EIVSTDQTILPDTEKAMKLHL----REGGLTFQLHRDV----------------PL---- 278
Query: 355 SEQLLFLMTLIGRKIFNPKWKPYIP----DFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
++ + I N K P D+ F + +H GGRA++D++++ L L +
Sbjct: 279 ---------MVAKNIENAAEKALSPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKED 327
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCN 461
+ ASR L +GN S+ + + + + ++ M +G + G G C
Sbjct: 328 KLRASRHVLSEYGNLISACVLFIIDEVRKR-SMAEG----KSTTGEGLDCG 373
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 36/293 (12%)
Query: 178 GLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDL 237
G DI L+V + + P + ++ LR +++ L GC AG ++ LA+DL
Sbjct: 142 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 201
Query: 238 LQVHPNSNAVVVSTEIITPNYYQGNERA---MLLPNCLFRMGGAAIXXXXXXXXXXXAKY 294
+ + +VV+ E +T Y+ G + LL LF G AA+ +
Sbjct: 202 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLF 260
Query: 295 RLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPA 354
+V +T D A F E +G +G + + + G+ ++
Sbjct: 261 EIVSAAQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVE------------- 303
Query: 355 SEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEA 414
LL + + W + +H G ++D++ L L + A
Sbjct: 304 -RCLLDMFGPLLGGDGGGGWNDLF---------WAVHPGSSTIMDQVDAALGLEPGKLAA 353
Query: 415 SRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW-----QIAFGSGFKCNS 462
SR L +GN S +++ + + + + + W +AFG G ++
Sbjct: 354 SRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDA 406
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 130/312 (41%), Gaps = 50/312 (16%)
Query: 159 RGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFN 218
+G AEL +A+ ++ ++ G I LIV C P + L ++K F
Sbjct: 96 KGVAELGKEAALKAI-KEWGQPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFM 154
Query: 219 LSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMG 276
+GC AG + LA+D+ + + + ++V +E+ T + +E + ++ + G
Sbjct: 155 FYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCFRGPSETHLDSMIGQAILGDG 214
Query: 277 GAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDK--AYRCVFEEEDKEGKVGISLSKDLMA 334
AA+ GAD R +FE + + + A
Sbjct: 215 AAAVIV----------------------GADPDLTVERPIFELVSTAQTI---VPESHGA 249
Query: 335 IAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKI---FNPKWKPY-IPDFKQAFEHFCI 390
I G L+S ++ +P TLI I + + P I D+ F +
Sbjct: 250 IEGHLLESGLSFHLYKTVP---------TLISNNIKTCLSDAFTPLNISDWNSLF--WIA 298
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKG 446
H GG A++D++ + L E ++ +R L +GN SS+++++ M + +K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 447 DRV-WQIAFGSG 457
+ + W + FG G
Sbjct: 359 EGLEWGVLFGFG 370
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 36/293 (12%)
Query: 178 GLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDL 237
G DI L+V + + P + ++ LR +++ L GC AG ++ LA+DL
Sbjct: 112 GRPAADITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDL 171
Query: 238 LQVHPNSNAVVVSTEIITPNYYQGNERA---MLLPNCLFRMGGAAIXXXXXXXXXXXAKY 294
+ + +VV+ E +T Y+ G + LL LF G AA+ +
Sbjct: 172 AENSRGARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLF 230
Query: 295 RLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPA 354
+V +T D A F E +G +G + + + G+ ++
Sbjct: 231 EIVSAAQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVE------------- 273
Query: 355 SEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEA 414
LL + + W + +H G ++D++ L L + A
Sbjct: 274 -RCLLDMFGPLLGGDGGGGWNDLF---------WAVHPGSSTIMDQVDAALGLEPGKLAA 323
Query: 415 SRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW-----QIAFGSGFKCNS 462
SR L +GN S +++ + + + + + W +AFG G ++
Sbjct: 324 SRRVLSDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDA 376
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 43/270 (15%)
Query: 198 PSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPN 257
P + N L +++ L GC AG + A+DL + + + +VV +EI
Sbjct: 725 PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVT 784
Query: 258 YYQGNERAM--LLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVF 315
+ +E A+ L+ LF G AA+ D R +F
Sbjct: 785 FRGPSEDALDSLVGQALFGDGSAAVI--------------------VGSDPDISIERPLF 824
Query: 316 EEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWK 375
+ +S ++ + + A+ N+ +G L + L++ K +
Sbjct: 825 QL--------VSAAQTFIPNSAGAIAGNLREVG-LTFHLWPNVPTLISENVEKCLTQAFD 875
Query: 376 PY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEM 434
P I D+ F + H GG A++D ++ L L + +EA+R L +GN SS+ + + +
Sbjct: 876 PLGISDWNSLF--WIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL 933
Query: 435 SYIEEKGRMKKGDRV-------WQIAFGSG 457
+ +K KG+R W + FG G
Sbjct: 934 DEMRKKSL--KGERATTGEGLDWGVLFGFG 961
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 55/276 (19%)
Query: 198 PSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPN 257
P + +I L ++K + + GC AG + LA+DL + + ++ ++V +E +
Sbjct: 139 PGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVT 198
Query: 258 YYQGNERAM--LLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHVVRTHKGADDKAYRCVF 315
+ +E M L+ LF G AAI G+D V
Sbjct: 199 FRGPSETDMDSLVGQALFADGAAAIII----------------------GSDP-----VP 231
Query: 316 EEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLMT-----LIGRKIF 370
E E+ ++ +S + L+ + A+ + +G L F + +I + I
Sbjct: 232 EVENPLFEI-VSTDQQLVPNSHGAIGGLLREVG---------LTFYLNKSVPDIISQNIN 281
Query: 371 NPKWKPYIP----DFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTS 426
+ K + P D+ F + H GGRA++D++++ + L E ++A+R L +GN S
Sbjct: 282 DALSKAFDPLGISDYNSIF--WIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMS 339
Query: 427 SSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
S+ +++ M + +K G G+ + W + FG G
Sbjct: 340 SACVFFIMDLMRKKSLEAGLKTTGEGLDWGVLFGFG 375
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 117/292 (40%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + GC AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKDIDILIVNCSLFSPT-PSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK ++ CS +P P + LR +K + GC AG + LA+DL
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 183 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 242
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R + G++ L + + NIT
Sbjct: 243 MVWTAQTIAPDSEGAIDGHLR----------EAGLTFH--LKGAVPDIVSKNIT------ 284
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 285 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 326
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 327 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 378
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS GC+ ++
Sbjct: 93 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 150
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y +GN C +F G AA+
Sbjct: 151 AAADMIRGGGAATMLVVGTEKLSPTIDMYDRGN--------CFIFADGAAAVVV------ 196
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 197 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 243
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 244 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQANSRINELLVKNLQLR 295
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 296 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 353
Query: 469 K 469
K
Sbjct: 354 K 354
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 130
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y +GN C +F G AA+
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMYDRGN--------CFIFADGAAAVVV------ 176
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 177 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 223
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 224 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQANSRINELLVKNLQLR 275
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 276 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 333
Query: 469 K 469
K
Sbjct: 334 K 334
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 30/279 (10%)
Query: 180 KPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQ 239
+ +I +L++ S P + ++ + L +I ++ MGC+A + ++ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 240 VHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHV 299
HP A+VV E+ + N ++ ++ + LF G AA+ ++V
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 300 VRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLL 359
R F + + GI L + I E ++ I V P ++L
Sbjct: 249 -----------VRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 360 FLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTL 419
+ L I D + + IH GG +I++ ++L +SAE S L
Sbjct: 298 WDNGL------------QISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 420 HRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW-QIAFGSG 457
RFGN S SL + + + ++ K AFG G
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPG 380
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y GN C +F G AA+
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYDAGN--------CFIFADGAAAVVV------ 197
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 198 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 244
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 245 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQANSRINELLVKNLQLR 296
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 297 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 354
Query: 469 K 469
K
Sbjct: 355 K 355
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS GC+ ++
Sbjct: 94 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 151
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y GN C +F G AA+
Sbjct: 152 AAADMIRGGGAATMLVVGTEKLSPTIDMYDAGN--------CFIFADGAAAVVV------ 197
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 198 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 244
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 245 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQANSRINELLVKNLQLR 296
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 297 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 354
Query: 469 K 469
K
Sbjct: 355 K 355
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 30/279 (10%)
Query: 180 KPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQ 239
+ +I +L++ S P + ++ + L +I ++ MGC+A + ++ A + ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 240 VHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAKYRLVHV 299
HP A+VV E+ + N ++ ++ + LF G AA+ ++V
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV-- 248
Query: 300 VRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLL 359
R F + + GI L + I E ++ I V P ++L
Sbjct: 249 -----------VRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 297
Query: 360 FLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTL 419
+ L I D + + IH GG +I++ ++L +SAE S L
Sbjct: 298 WDNGL------------QISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 341
Query: 420 HRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW-QIAFGSG 457
RFGN S SL + + + ++ K AFG G
Sbjct: 342 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPG 380
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDAHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS GC+ ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLS-AGCAGFGYALG 130
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y +GN C +F G AA+
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMYDRGN--------CFIFADGAAAVVV------ 176
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 177 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 223
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 224 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQFNSRINELLVKNLQLR 275
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 276 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 333
Query: 469 K 469
K
Sbjct: 334 K 334
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 118/287 (41%), Gaps = 32/287 (11%)
Query: 174 LQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDL 233
L+ G DI ++ S P ++ +I+ L +++ +L+ MGC AGL S+
Sbjct: 107 LKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRT 166
Query: 234 ARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXXXXXAK 293
A L + P + +VV TE+ + ++ + ++ + +F G AA
Sbjct: 167 AASLAKASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPL 226
Query: 294 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 353
Y ++ + + A V++ E + +G+ S P+V+
Sbjct: 227 YEVMCSINRSFPNTENAM--VWDLEKEGWNLGLDASI------------------PIVIG 266
Query: 354 ASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVE 413
+ + F+ TL+ + D + F IH GG++++ ++ +L + + +
Sbjct: 267 SGIE-AFVDTLLDKAKLQTSTAISAKDCE-----FLIHTGGKSILMNIENSLGIDPKQTK 320
Query: 414 ASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQI--AFGSGF 458
+ H +GN SS+S+ + M + R K + I AFG G
Sbjct: 321 NTWDVYHAYGNMSSASVIFVMDH----ARKSKSLPTYSISLAFGPGL 363
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 118 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 177
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 178 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 237
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 238 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 279
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 280 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 321
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 322 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 373
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDVHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDLHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDFHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 44/301 (14%)
Query: 174 LQKTGLKPKDIDILIVNCSL-FSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISID 232
L GL DID +IV + F TP + MV + I F+LS G ++
Sbjct: 73 LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGFDLSAGAAGFGY-ALG 130
Query: 233 LARDLLQVHPNSNAVVVSTEIITPN---YYQGNERAMLLPNC-LFRMGGAAIXXXXXXXX 288
A D+++ + +VV TE ++P Y +GN C +F G AA+
Sbjct: 131 AAADMIRGGGAATMLVVGTEKLSPTIDMYDRGN--------CFIFADGAAAVVV------ 176
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
+ + T G+D + + ++ D I+ +++ + + G
Sbjct: 177 ---GETPFQGIGPTVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEG 223
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
P V F M +GR+ + PD + F H + + L KNLQL
Sbjct: 224 PAVF---RWAAFKMGDVGRRAMDAAG--VRPD---QIDVFVPHQANSRINELLVKNLQLR 275
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ V A+ + GNTS++S+ M+ + G K GD I +G+G + V +
Sbjct: 276 PDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVRMP 333
Query: 469 K 469
K
Sbjct: 334 K 334
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 42/237 (17%)
Query: 210 LRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAM--L 267
LR +K L G AG + +A+DL + + + +V +E+ + +E + L
Sbjct: 163 LRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVTAVTFRAPSETHLDGL 222
Query: 268 LPNCLFRMGGAAIXXXXXXXXXXXAKYRLVH-----VVRTHKGADDKAYRCVFEEEDKEG 322
+ + LF G AA+ +H V+ GA + R E
Sbjct: 223 VGSALFGDGAAALIVGSDPVPQEEKPLFEIHWAGEAVLPDSDGAINGHLR--------EA 274
Query: 323 KVGISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFK 382
+ L KD+ + + NI + +E L ++ + P +
Sbjct: 275 GLIFHLLKDVPGL----ISKNIDKV------LAEPLEYV---------------HFPSYN 309
Query: 383 QAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEE 439
F + +H GG A++D+++ L LS + ++ASR L +GN SS+S+ + + I +
Sbjct: 310 DMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRK 364
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 118 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 177
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 178 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 237
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 238 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 279
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + GG A++D++++ L L E
Sbjct: 280 ----------------KALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPE 321
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 322 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 373
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 388 FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGD 447
F H +ID ++ L L E V + + R+GNTS++S+ + + GR+++GD
Sbjct: 243 FVPHQANLRIIDAARERLGLPWERVA---VNVDRYGNTSTASIPLALKEAVDAGRIREGD 299
Query: 448 RVWQIAFGSGFKCNSAV 464
V ++FG+G +AV
Sbjct: 300 HVLLVSFGAGLTWAAAV 316
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 117 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 176
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ LF G AA I +
Sbjct: 177 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFE 236
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 237 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 278
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 279 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 320
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +G SS+ + + + + +K G G+ + W + FG G
Sbjct: 321 KMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 372
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 50/292 (17%)
Query: 180 KPKD-IDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLL 238
+PK I LIV + P + LR +K + + G AG + LA+DL
Sbjct: 119 QPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLA 178
Query: 239 QVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXXXXXXXXXAKYR 295
+ + + +VV +E+ + ++ + L+ L G AA I +
Sbjct: 179 ENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFE 238
Query: 296 LVHVVRT----HKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLV 351
+V +T +GA D R E + L KD+ I + NIT
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLR--------EAGLTFHLLKDVPGI----VSKNIT------ 280
Query: 352 LPASEQLLFLMTLIGRKIFNPKWKPY-IPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAE 410
K ++P I D+ F + H GG A++D++++ L L E
Sbjct: 281 ----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPE 322
Query: 411 HVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRMKKGDRV-WQIAFGSG 457
+ A+R L +GN SS+ + + + + +K G G+ + W + FG G
Sbjct: 323 KMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 374
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKK----G 446
H GGRA++D+++ L+L E A+R L +GN S+S+ Y + + K K G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 447 DRV-WQIAFGSG 457
+ + W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKK----G 446
H GGRA++D+++ L+L E A+R L +GN S+S+ Y + + K K G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 447 DRV-WQIAFGSG 457
+ + W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 388 FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK 440
+ +H GG A++D+++ L+L +ASR L +GN SS+S+ + + + E+
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRER 370
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 388 FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRM 443
+ H G A+ID ++ LQLS + + +R +GN S+++++ M + ++ GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 444 KKGDRV-WQI--AFGSGFKCNSAVWK 466
GD + W + FG G + V +
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLR 385
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 388 FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK----GRM 443
+ H G A+ID ++ LQLS + + +R +GN S+++++ M + ++ GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 444 KKGDRV-WQI--AFGSGFKCNSAVWK 466
GD + W + FG G + V +
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLR 385
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 383 QAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTL-HRFGNTSSSSLWYEMSYIEEKG 441
+ + F IH R K+ + V MT+ GN +S+ +S ++E G
Sbjct: 264 EELDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELG 319
Query: 442 RMKKGDRVWQIAFGSGFKCNSA--VW 465
R+KKGDR+ + GSG C+ A VW
Sbjct: 320 RLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 383 QAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTL-HRFGNTSSSSLWYEMSYIEEKG 441
+ + F IH R K+ + V MT+ GN +S+ +S ++E G
Sbjct: 263 EELDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELG 318
Query: 442 RMKKGDRVWQIAFGSGFKCNSA--VW 465
R+KKGDR+ + GSG C+ A VW
Sbjct: 319 RLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 105/273 (38%), Gaps = 46/273 (16%)
Query: 169 AMDSLLQKTGLKPKDIDILIVNCSLFSPT-PSLSAMVINKYKLRSNIKSFNLSGMGCSAG 227
A + +Q+ G I LI CS +P P V L ++K + GC AG
Sbjct: 116 AAEKAIQEWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAG 174
Query: 228 LISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXX 284
+ +A+DL + + + +V+ +E + +E + L+ LF G +A I
Sbjct: 175 GTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGAD 234
Query: 285 XXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVG-----ISLSKDLMAIAGEA 339
A + +V +T + EG +G + L+ L +
Sbjct: 235 PIPQVEKACFEIVWTAQTVV-------------PNSEGAIGGKVREVGLTFQLKGAVPDL 281
Query: 340 LKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVID 399
+ +NI ++ A Q I D+ + F + +H GGRA++D
Sbjct: 282 ISANIENC---MVEAFSQF------------------KISDWNKLF--WVVHPGGRAILD 318
Query: 400 ELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWY 432
++ L L + +R + +GN SS+ + +
Sbjct: 319 RVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHF 351
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 105/273 (38%), Gaps = 46/273 (16%)
Query: 169 AMDSLLQKTGLKPKDIDILIVNCSLFSPT-PSLSAMVINKYKLRSNIKSFNLSGMGCSAG 227
A + +Q+ G I LI CS +P P V L ++K + GC AG
Sbjct: 132 AAEKAIQEWGQSKSGITHLIF-CSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAG 190
Query: 228 LISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAM--LLPNCLFRMGGAA-IXXXX 284
+ +A+DL + + + +V+ +E + +E + L+ LF G +A I
Sbjct: 191 GTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGAD 250
Query: 285 XXXXXXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVG-----ISLSKDLMAIAGEA 339
A + +V +T + EG +G + L+ L +
Sbjct: 251 PIPQVEKACFEIVWTAQTVV-------------PNSEGAIGGKVREVGLTFQLKGAVPDL 297
Query: 340 LKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVID 399
+ +NI ++ A Q I D+ + F + +H GGRA++D
Sbjct: 298 ISANIENC---MVEAFSQF------------------KISDWNKLF--WVVHPGGRAILD 334
Query: 400 ELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWY 432
++ L L + +R + +GN SS+ + +
Sbjct: 335 RVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHF 367
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 423 GNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSA--VW 465
GN +S+ +S ++E GR+KKGDR+ + GSG C+ A VW
Sbjct: 294 GNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW 450
H +I K L +S ++V +TL R GNTS++S+ + GR+K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 451 QIAFGSGFKCNSAVWK 466
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW 450
H +I K L +S ++V +TL R GNTS++S+ + GR+K G V
Sbjct: 267 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 323
Query: 451 QIAFGSGFKCNSAVWK 466
AFG GF SA+ +
Sbjct: 324 LEAFGGGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW 450
H +I K L +S ++V +TL R GNTS++S+ + GR+K G V
Sbjct: 244 HQANLRIISATAKKLGMSMDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 451 QIAFGSGFKCNSAVWK 466
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW 450
H +I K L S ++V +TL R GNTS++S+ + GR+K G V
Sbjct: 244 HQANLRIISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVL 300
Query: 451 QIAFGSGFKCNSAVWK 466
AFG GF SA+ +
Sbjct: 301 LEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 397 VIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGS 456
+I K L S ++V +TL R GNTS++S+ + GR+K G V AFG
Sbjct: 250 IISATAKKLGXSXDNV---VVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGG 306
Query: 457 GFKCNSAVWK 466
GF SA+ +
Sbjct: 307 GFTWGSALVR 316
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 153 PTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRS 212
P EA + E A LQ GL D+D LI + S P L + N+ LR
Sbjct: 132 PAWEAVQAYGERAARGA----LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRG 187
Query: 213 NIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNE 263
+ + C AG S+ LA DL+ P+ +VV +E ++ Y ++
Sbjct: 188 DTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTYQPADD 238
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 382 KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK- 440
K A + +H GG ++ + + L+ EH+ AS GN+SS++++ ++ + EK
Sbjct: 316 KPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKD 375
Query: 441 -GRMKKGDRVWQIAFGSGFKCNSAVWKC------NKTIKTTT--DNP 478
+ G +V + G F V C N +TTT D P
Sbjct: 376 MDALAPGGKVKEYVVGCAFGPGINVEMCMLKRRMNAPARTTTGLDTP 422
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 362 MTLIGRKIFNPKWKPYIPDFKQAFE----------HFCIHAGGRAVIDELQKNLQLSAEH 411
+ + G+++F +P ++A E F H +ID L L + EH
Sbjct: 218 LVMDGKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVP-EH 276
Query: 412 VEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFK 459
V SR GNTSS+S+ + + G + G I FG+G
Sbjct: 277 VVVSR-DAEDTGNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLS 323
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 382 KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK- 440
K A + +H GG ++ + + L+ EH+ AS GN+SS++++ ++ + EK
Sbjct: 287 KPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKD 346
Query: 441 -GRMKKGDRVWQIAFGSGFKCNSAVWKC 467
+ G +V + G F V C
Sbjct: 347 MDALAPGGKVKEYVVGCAFGPGINVEMC 374
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 382 KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEK- 440
K A + +H GG ++ + + L+ EH+ AS GN+SS++++ ++ + EK
Sbjct: 287 KPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKD 346
Query: 441 -GRMKKGDRVWQIAFGSGFKCNSAVWKC 467
+ G +V + G F V C
Sbjct: 347 MDALAPGGKVKEYVVGCAFGPGINVEMC 374
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 325 GISLSKDLMAIAGEALKSNITTIGPLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQA 384
G + D++A A E++ S++TT+GP PAS++ +L+ ++P + +P+ ++A
Sbjct: 423 GKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFA--PWSPPSRALLPELRKA 480
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 338 EALKSNITTIGPLVLPASEQLLFLMTLIGR---KIFNPKWKPYIPDFKQAFEHFCIHAGG 394
E N+ T L + +E + F + + R ++ +P ++ + F +H
Sbjct: 241 EDASGNVRTDEHLYMNGAEVMAFSLAEVPRAADRLLALAGEP-----RENIDCFVLHQAN 295
Query: 395 RAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAF 454
R ++D L+K +++ EH + + GNT SS+L + + G + +G R+ + F
Sbjct: 296 RFMLDALRKKMKIP-EH--KFPVLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGF 352
Query: 455 GSGF 458
G G+
Sbjct: 353 GVGY 356
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 391 HAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVW 450
H +I+ L + L + E V + + ++GNTS++S+ + ++G++K+GD +
Sbjct: 236 HQANVRIINALAEKLNIPKEKV---FVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLIL 292
Query: 451 QIAFGSGF 458
A G G
Sbjct: 293 MTAMGGGL 300
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 388 FCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGD 447
F H +IDE K L+L E V +R + GNTS++S+ M + E+ G
Sbjct: 272 FIPHQANMRIIDEFAKQLKLP-ESVVVAR-DIADAGNTSAASIPLAMHRLLEENPELSGG 329
Query: 448 RVWQIAFGSGF 458
QI FG+G
Sbjct: 330 LALQIGFGAGL 340
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 337 GEALKSNITTIGPLVLPASEQLLF--LMTLI--GRKI--FNPKWKPYIPDFKQAFEHFCI 390
GE K +I+ +V ++Q LF M L+ G ++ F+P W YIP I
Sbjct: 92 GERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQ--------II 143
Query: 391 HAGGRAVIDE--LQKNLQLSAEHVEA 414
AGG + E + KN Q S E VE
Sbjct: 144 LAGGTVNVVETFMSKNFQPSLEEVEG 169
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 53/301 (17%), Positives = 115/301 (38%), Gaps = 55/301 (18%)
Query: 174 LQKTGLKPKDIDILIVNCSLFS-PTPSLSAMVINKYKLRSNIKSFNLSGM----GCSAGL 228
+ G++P+DID++IV + P P+++ M L+ + + ++ M CS +
Sbjct: 63 IADAGIQPEDIDMIIVATATGDMPFPTVANM------LQERLGTGKVASMDQLAACSGFM 116
Query: 229 ISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNERAMLLPNCLFRMGGAAIXXXXXXXX 288
S+ A+ +Q N +VV + ++ +R+ + LF G A+
Sbjct: 117 YSMITAKQYVQSGDYHNILVVGADKLSK-ITDLTDRSTAV---LFGDGAGAVIIGEVSEG 172
Query: 289 XXXAKYRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIG 348
Y + G+D + ++ ++D G
Sbjct: 173 RGIISYEM--------GSDGTGGKHLYLDKD---------------------------TG 197
Query: 349 PLVLPASEQLLFLMTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLS 408
L + E F + ++G K + + F H +++ ++ L +S
Sbjct: 198 KLKMNGREVFKFAVRIMGDASTRVVEKANLT--SDDIDLFIPHQANIRIMESARERLGIS 255
Query: 409 AEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWKCN 468
+ + S ++++GNTS++S+ + + G++K D + + FG G + K
Sbjct: 256 KDKMSVS---VNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGFGGGLTWGAMTIKWG 312
Query: 469 K 469
K
Sbjct: 313 K 313
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 417 MTLHRFGNTSSSSLWYEMSYIEEKGRMKKGDRVWQIAFGSGFKCNSAVWK 466
+T+ GNTS++S+ + GR+K+G V G GF ++V +
Sbjct: 283 VTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 170 MDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMG-CSAGL 228
M +LLQ TG + + +VNC+ PSL+ +IN + S+ LS G C+ G+
Sbjct: 230 MSALLQATGAQEDEYGQFLVNCNSIQNLPSLT-FIINGVEFPLPPSSYILSNNGYCTVGV 288
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 163 ELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINK-YKLRSNIKSFNLSG 221
++V F+A + T + ID++IV +A+V+++ ++ +SF +
Sbjct: 50 DIVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIK- 108
Query: 222 MGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNE 263
GC + LA++ + +HP+ +VV+ +I G E
Sbjct: 109 EGCYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSGGE 150
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 215 KSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNE 263
+ F + C A +I LA+D L PN +V++T+ G E
Sbjct: 102 RCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGE 150
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 215 KSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNE 263
+ F + C A +I LA+D L PN +V++T+ G E
Sbjct: 102 RCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGE 150
>pdb|3IL6|A Chain A, Structure Of E. Faecalis Fabh In Complex With 2-({4-[(3r,
5s)-3,5-Dimethylpiperidin-1-Yl]-3-Phenoxybenzoyl}amino)
Benzoic Acid
Length = 321
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 366 GRKIFNPKWKPYIPDF-----KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLH 420
GR IF+ K + + ++ +H +ID++ + ++S E +
Sbjct: 216 GRSIFDFAIKDVSQNILSLVTDETVDYLLLHQANVRIIDKIARKTKISREKF---LTNMD 272
Query: 421 RFGNTSSSSLWYEMSYIEEKGRMKKG--DRVWQIAFGSGFKCNS 462
++GNTS++S+ + E G + G RV FG G S
Sbjct: 273 KYGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGS 316
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 382 KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYEMSYIEEKG 441
K+ + H +I K L++ V +TL ++ N S++++ + G
Sbjct: 241 KKDLDWLVPHQANLRIITATAKKLEMDMSQV---VVTLDKYANNSAATVPVALDEAIRDG 297
Query: 442 RMKKGDRVWQIAFGSGFKCNSAV 464
R+++G + AFG G+ SA+
Sbjct: 298 RIQRGQLLLLEAFGGGWTWGSAL 320
>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
Length = 320
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 366 GRKIFNPKWKPYIPDF-----KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLH 420
GR IF+ K + + ++ +H +ID++ + ++S E +
Sbjct: 215 GRSIFDFAIKDVSQNILSLVTDETVDYLLLHQASVRIIDKIARKTKISREKF---LTNMD 271
Query: 421 RFGNTSSSSLWYEMSYIEEKGRMKKG--DRVWQIAFGSGFKCNS 462
++GNTS++S+ + E G + G RV FG G S
Sbjct: 272 KYGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGS 315
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 366 GRKIFNPKWKPYIPDF-----KQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLH 420
GR IF+ K + + ++ +H +ID++ + ++S E +
Sbjct: 236 GRSIFDFAIKDVSQNILSLVTDETVDYLLLHQANVRIIDKIARKTKISREKF---LTNMD 292
Query: 421 RFGNTSSSSLWYEMSYIEEKGRMKKG--DRVWQIAFGSGFKCNS 462
++GNTS++S+ + E G + G RV FG G S
Sbjct: 293 KYGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGS 336
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 163 ELVIFSAMDSLLQKTGLKPKDIDILIVNCSLFSPTPSLSAMVINK-YKLRSNIKSFNL-- 219
++V F+A + T + ID++IV +A+V+++ ++ +SF +
Sbjct: 69 DIVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKE 128
Query: 220 SGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGNE 263
+ G +AGL LA++ + +HP+ +VV+ +I G E
Sbjct: 129 AXYGATAGL---QLAKNHVALHPDKKVLVVAADIAKYGLNSGGE 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,203,846
Number of Sequences: 62578
Number of extensions: 548527
Number of successful extensions: 1407
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 97
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)