RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011008
(496 letters)
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins.
eIF2D translation initiation factor (also known as
ligatin) is involved in the recruitment and delivery of
aminoacyl-tRNAs to the P-site of the eukaryotic ribosome
in a GTP-independent manner.
Length = 85
Score = 124 bits (314), Expect = 1e-34
Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG-KKGQEVLIQG 466
I I TERRQGNKK+T +SGLE+F +DPE A ELQKK A ST+V+ LPG KKG EV +QG
Sbjct: 2 IDITTERRQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQG 61
Query: 467 GVIADVAKHLVEQFGIPKRYIEVL 490
+ VAK L E++G+PK+YI+ L
Sbjct: 62 NQVKFVAKLLTEKYGVPKKYIDGL 85
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1.
Length = 74
Score = 75.2 bits (186), Expect = 4e-17
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 402 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQE 461
K + I+I E+R+G K +T ++GLE F +D + LA EL+KKF C TV K G+E
Sbjct: 1 KKEDQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTV-----KDGEE 55
Query: 462 VLIQGGVIADVAKHLVEQF 480
+ IQG V L ++
Sbjct: 56 IEIQGDHRDKVKDLLEKEG 74
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and
related proteins [Translation, ribosomal structure and
biogenesis].
Length = 104
Score = 64.6 bits (158), Expect = 6e-13
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 400 VRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKG 459
V K + ++I E R+ K +T + GL+ +D + LA EL+KK AC TV K G
Sbjct: 21 VAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-----KDG 75
Query: 460 QEVLIQGGVIADVAKHLVEQFGIPKRYIEV 489
E+ IQG V + L+++ G + I +
Sbjct: 76 -EIEIQGDHRDKVKELLIKK-GFKVKNIGI 103
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins.
DENR (density regulated protein), together with MCT-1
(multiple copies T cell malignancies), has been shown to
have similar function as eIF2D translation initiation
factor (also known as ligatin), which is involved in the
recruitment and delivery of aminoacyl-tRNAs to the
P-site of the eukaryotic ribosome in a GTP-independent
manner.
Length = 86
Score = 61.0 bits (149), Expect = 7e-12
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
+ I R K +T ++GLETF +D + A KKFAC +V + K E++IQG
Sbjct: 3 VTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGK-DEIVIQGD 61
Query: 468 VIADVAKHLVEQFG-IPKRYIEVLD 491
V D+ ++E++ I + IE+L
Sbjct: 62 VTDDIVDLILEKWPEIDEDNIEILG 86
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related
proteins. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. eIF1 interacts with 18S rRNA in the 40S
ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown. The function of
non-eukaryotic family members is also unclear.
Length = 78
Score = 51.3 bits (123), Expect = 1e-08
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
I I E+R G KK+TK+ GL ++ D LA EL+KK C +V E+ IQG
Sbjct: 2 IHIKVEQRSGGKKVTKVEGLPAYI-DLRKLADELKKKLGCGGSVEGEKM----EIEIQGD 56
Query: 468 VIADVAKHLVEQFGIPKRYIEVL 490
+ L E+ GI K ++E+L
Sbjct: 57 HTDQIIVALEEK-GIDKDWVELL 78
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed.
Length = 99
Score = 43.0 bits (102), Expect = 2e-05
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 408 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGG 467
I+I ++R+ K++T + G++ +D + LA +L+ K AC TV K G+ + +QG
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGR-IELQGD 79
Query: 468 VIADVAKHLVEQFGIPKRYIE 488
V + L++ G + IE
Sbjct: 80 HRERVKELLIK-MGFSEENIE 99
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 394 RGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAE 453
+K + + I E R K +T + GLETF +D + + +KFA +V++
Sbjct: 77 AREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSK 136
Query: 454 LPGKKGQEVLIQGGVIADV 472
K +E++IQG V+ D+
Sbjct: 137 SVTGK-EEIVIQGDVMDDI 154
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative,
prokaryotic. This family of archaeal and bacterial
proteins is homologous to the eukaryotic translation
intiation factor SUI1 involved in directing the ribosome
to the proper start site of translation by functioning
in concert with eIF-2 and the initiator tRNA-Met
[Protein synthesis, Translation factors].
Length = 101
Score = 42.7 bits (101), Expect = 3e-05
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 380 STFVNR--MQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEAL 437
ST V VVR IQ T R+G K +T + GL+ +D + L
Sbjct: 4 STECGLPKELCEEVAKPKEDQVVR------IQRETRGRKG-KGVTIIEGLDLSDIDLKEL 56
Query: 438 ASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQ 479
A EL+ K C TV K G + IQG V L ++
Sbjct: 57 AKELKSKCGCGGTV-----KDGV-IEIQGDHRDRVKDLLEKK 92
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1,
eukaryotic. Alternate name: MOF2. A similar protein
family (see TIGRFAMs model TIGR01158) is found in
prokaryotes. The human proteins complements a yeast SUI1
mutatation [Protein synthesis, Translation factors].
Length = 110
Score = 41.4 bits (97), Expect = 1e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 395 GSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAEL 454
G G I I ++R G K +T + GL D + + L+K+FAC+ TV E
Sbjct: 15 GDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEY-DLKKIVKALKKEFACNGTVIED 73
Query: 455 PGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEV 489
P + G+ + +QG +V + L+ Q + K I++
Sbjct: 74 P-EMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKI 107
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia
coli YciH. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. The function of non-eukaryotic family
members is unclear. Escherichia coli YciH is a
non-essential protein and was reported to be able to
perform some of the functions of IF3 in prokaryotic
initiation.
Length = 76
Score = 39.8 bits (94), Expect = 1e-04
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 407 TIQIVTERRQ-GNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQ 465
+++ E+R G K +T + GL D + LA EL+KK C TV K E+ +Q
Sbjct: 2 KVRVRLEKRGRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTV------KDGEIELQ 55
Query: 466 GGVIADVAKHLVEQ 479
G + + L ++
Sbjct: 56 GDHREKIKELLEKK 69
>gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA
domain) [Translation, ribosomal structure and
biogenesis].
Length = 161
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PGI + AD G+ V P+AVG MS E ++ +GKA++ H+
Sbjct: 96 MAPGI-VSAD--GEIKEGDIVVVVDEKKGRPLAVGIALMSGKE-MEEKKKGKAVKNIHHV 151
Query: 61 RDLLW 65
D LW
Sbjct: 152 GDKLW 156
>gnl|CDD|234310 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
protein. This universal archaeal protein contains a
domain possibly associated with RNA binding (pfam01472,
TIGR00451).
Length = 150
Score = 40.7 bits (96), Expect = 4e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PGI + AD PS G+ V + P+AVG M + E ++ +GKA++ H+
Sbjct: 89 MAPGI-VEAD--PSIKEGDIVFVVDETHGKPLAVGIALMDAEEMVEEK-KGKAVKNIHHV 144
Query: 61 RDLLW 65
D +W
Sbjct: 145 GDKIW 149
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1. eIF1/SUI1
(eukaryotic initiation factor 1) plays an important role
in accurate initiator codon recognition during
translation initiation. eIF1 interacts with 18S rRNA in
the 40S ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown.
Length = 84
Score = 34.0 bits (79), Expect = 0.019
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 408 IQIVTERRQGNKKMTKLSGL-ETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQG 466
I I ++R G K +T + GL E F D + + +K+FAC+ TV E P + G+ + +QG
Sbjct: 3 IHIRIQQRNGRKTLTTVQGLPEEF--DLKKILKAFKKEFACNGTVVEDP-EYGEVIQLQG 59
Query: 467 GVIADVAKHLVEQFGIPKRYIEV 489
++ + L+E+ K I+V
Sbjct: 60 DQRKNIKEFLLEEGIAKKDNIKV 82
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 32.8 bits (75), Expect = 0.33
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 207 ILPCRPSGITLDIKKSSHKKLTKWLQAKSSAG--LISVKED---KYKKESMLFSVNRGHP 261
I+P S T DI K L + S +I V D + KE G
Sbjct: 3 IIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSFAKELKKIIAKNGAI 62
Query: 262 DYLSFKPEKR---PAEKASQAVDHAASDNI 288
+Y+S K K PA+ ++ ++++SD I
Sbjct: 63 NYISHKTHKDLFSPAKARNRGAEYSSSDFI 92
>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
Length = 160
Score = 32.1 bits (74), Expect = 0.35
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 31 PIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLW 65
P+AVG M E +GKA++ H+ D +W
Sbjct: 123 PLAVGRALMDGDEM-VEEKKGKAVKNIHHVGDEIW 156
>gnl|CDD|203573 pfam07071, DUF1341, Protein of unknown function (DUF1341). This
family consists of several hypothetical bacterial
proteins of around 220 residues in length. The function
of this family is unknown.
Length = 218
Score = 32.4 bits (74), Expect = 0.41
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 284 ASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPT 343
A D Q A + +++ +P H+N +F VG L D V N LV PT
Sbjct: 64 AGDPNQSAMVADISRHVQPQ-HINQVFTGVGTSRALL----GQNDTVVN-----GLVSPT 113
Query: 344 AK 345
K
Sbjct: 114 GK 115
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 31.2 bits (71), Expect = 1.3
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 427 LETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGI 482
L + E + K A G V++ GG + D+A H + ++GI
Sbjct: 257 LLNYSKGEENQIEAMIKAIA----------DSGVNVIVTGGSVGDMALHYLNRYGI 302
>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain. This family includes the SWIB
domain and the MDM2 domain. The p53-associated protein
(MDM2) is an inhibitor of the p53 tumour suppressor gene
binding the transactivation domain and down regulating
the ability of p53 to activate transcription. This
family contains the p53 binding domain of MDM2.
Length = 76
Score = 28.0 bits (63), Expect = 2.3
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 311 ASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIK 364
+GA + +E ++ YI++ NL P K I++ D L +
Sbjct: 13 KFLGAGE---LSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIFGGDRVG 63
>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine
synthase and Archaeosine transglycosylase.
Length = 76
Score = 27.2 bits (61), Expect = 4.5
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 31 PIAVGSTTMSSTEALKAGLRGKALRITHYY 60
P+ +G MSS E + +G A+++
Sbjct: 46 PLGIGLANMSSEEIARIKGKGLAVKVRRAV 75
>gnl|CDD|129543 TIGR00451, unchar_dom_2, uncharacterized domain 2. This
uncharacterized domain is found a number of enzymes and
uncharacterized proteins, often at the C-terminus. It is
found in some but not all members of a family of related
tRNA-guanine transglycosylases (tgt), which exchange a
guanine base for some modified base without breaking the
phosphodiester backbone of the tRNA. It is also found in
rRNA pseudouridine synthase, another enzyme of RNA base
modification not otherwise homologous to tgt. It is
found, again at the C-terminus, in two putative
glutamate 5-kinases. It is also found in a family of
small, uncharacterized archaeal proteins consisting
mostly of this domain.
Length = 107
Score = 27.8 bits (62), Expect = 5.2
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
M PGI + + G+ V P+AVG MS E + +GKA++ H+
Sbjct: 50 MRPGIVDADEDIKE---GDDVVVVDENKDRPLAVGIALMSGEEMKEMD-KGKAVKNIHHI 105
Query: 61 RD 62
D
Sbjct: 106 GD 107
>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
Length = 426
Score = 29.2 bits (66), Expect = 5.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 452 AELP-GKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 495
A LP G+ G ++ I GG IA V L + E +D R
Sbjct: 9 ANLPDGRTGIDIGIAGGRIAAVEPGLQAEAA------EEIDAAGR 47
>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
Length = 341
Score = 29.0 bits (65), Expect = 5.5
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 6 SIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLR 50
IP G P FLS PW + P + + EAL LR
Sbjct: 58 FIPFGG-PLFLSSPPWKLLQSATPLTLRGNGVVLKKVEALNLRLR 101
>gnl|CDD|201816 pfam01472, PUA, PUA domain. The PUA domain named after
Pseudouridine synthase and Archaeosine
transglycosylase, was detected in archaeal and
eukaryotic pseudouridine synthases, archaeal
archaeosine synthases, a family of predicted ATPases
that may be involved in RNA modification, a family of
predicted archaeal and bacterial rRNA methylases.
Additionally, the PUA domain was detected in a family
of eukaryotic proteins that also contain a domain
homologous to the translation initiation factor
eIF1/SUI1; these proteins may comprise a novel type of
translation factors. Unexpectedly, the PUA domain was
detected also in bacterial and yeast glutamate kinases;
this is compatible with the demonstrated role of these
enzymes in the regulation of the expression of other
genes. It is predicted that the PUA domain is an RNA
binding domain.
Length = 74
Score = 26.7 bits (60), Expect = 6.1
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
+ PG+ + DG F G+ V +AVG SS E K GKA+++
Sbjct: 20 LAPGV-VEVDG--DFRRGDEVVVVTEKG-ELVAVGLANYSSEEMAKI-KGGKAVKVRRVL 74
>gnl|CDD|211966 TIGR04243, nodulat_NodB, chitooligosaccharide deacetylase NodB.
Nodulation factors are lipooligosaccharide signalling
molecules produced by rhizobia, the symbiotic
nitrogen-fixing bacteria that form nodules in plants.
These Nod factor sustems have the NodABC genes in common
but differ subtly in what they produce, which affects
host range. NodB is a chitooligosaccharide deacetylase.
Length = 197
Score = 28.1 bits (63), Expect = 7.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 171 TEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPC-RPSGITL 217
T++V K L LH +V +D PG + +L RP I L
Sbjct: 106 TDEVLRVAAKAGLTPLHWSVDPRDWSRPGVDAIVDAVLANARPGSIVL 153
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 28.8 bits (65), Expect = 7.4
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 16/60 (26%)
Query: 6 SIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALK------AGLRGKALRITHY 59
+PA+ F++ P AP+ +G+ T++ +K A L G A IT +
Sbjct: 504 ELPAEAFGRFVAAIP---------APLGIGTVTLADGSWVKGFICEPAALEG-ARDITAF 553
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 28.4 bits (64), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 385 RMQAHHVVSRGSQSVVRKGA 404
R+ AHH+V + S+ V +G
Sbjct: 383 RLDAHHLVEQASKRAVAEGR 402
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.370
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,645,889
Number of extensions: 2357599
Number of successful extensions: 1459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 31
Length of query: 496
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 395
Effective length of database: 6,457,848
Effective search space: 2550849960
Effective search space used: 2550849960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.2 bits)