RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 011008
         (496 letters)



>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 68.4 bits (167), Expect = 1e-14
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 398 SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGK 457
            ++  G    I I  ++R G K +T + G+     D + L    +KKFAC+ TV E P +
Sbjct: 34  DLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY-DKKKLVKAFKKKFACNGTVIEHP-E 91

Query: 458 KGQEVLIQGGVIADVAKHLVEQFGIPKRYIEV 489
            G+ + +QG    ++ + LVE        ++V
Sbjct: 92  YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKV 123


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 402 KG-ALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQ 460
           KG  +  IQ  T  R+G K +  ++G++    +   LA+EL+KK  C   V      K  
Sbjct: 1   KGDGVVRIQRQTSGRKG-KGVCLITGVDLDDAELTKLAAELKKKCGCGGAV------KDG 53

Query: 461 EVLIQGGVIADVAKHLVEQFGIPKR 485
            + IQG     +   L  +    K 
Sbjct: 54  VIEIQGDKRDLLKSLLEAKGMKVKL 78


>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
          C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
          56636]}
          Length = 93

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 13 PSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALK---AGLRGKALRITHYYRDLLW 65
           SF  G+  A        P+ VG   + S+   K      RG+A+R  H   D LW
Sbjct: 30 GSFTRGDVVAALYHETRTPVMVGVAEVDSSALEKLYREKARGRAVRRVHRLGDALW 85


>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
          C-terminal domain {Archaeon Thermoplasma acidophilum
          [TaxId: 2303]}
          Length = 85

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 1  MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
            PGI +  D   S   G+   VK       IAVG   M + E +    RGKA RI H+ 
Sbjct: 22 FAPGI-VSMDD--SIRKGDMIFVKSSKGY-FIAVGMAEMDAGEVMATK-RGKAARIIHFP 76

Query: 61 RDLLWGS 67
           D L  +
Sbjct: 77 GDELIRA 83


>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB,
          C-terminal domain {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 85

 Score = 27.0 bits (60), Expect = 1.7
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 1  MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITH 58
             GI            GE   V+       +AVG   M++ E L A  +G A+ +  
Sbjct: 22 YVRGI-AKLSK--GIGKGETVLVETL-KGEAVAVGKALMNTKEILNAD-KGVAVDVER 74


>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 250

 Score = 27.8 bits (61), Expect = 3.0
 Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 130 SATQDDFDGNIVE-QVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDK 180
            + + +F+G+ +E  +  D     L       +       LT+++++  L+ 
Sbjct: 198 ESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEA 249


>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 327

 Score = 27.0 bits (59), Expect = 5.9
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 305 HVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVL 350
           H+   +A +  +  + Y+ +E  D+  +   +   +K     + VL
Sbjct: 34  HLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVL 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,745,875
Number of extensions: 78455
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 7
Length of query: 496
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 407
Effective length of database: 1,185,626
Effective search space: 482549782
Effective search space used: 482549782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.3 bits)