BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011010
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/486 (94%), Positives = 477/486 (98%), Gaps = 1/486 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGGSISRA+QQMSNATIIDEKVLNECLNEITRALLQADVQFKLVR+M TNIKKIV
Sbjct: 1 MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NLDDLAAGHNKRRIIQQA+FNELCK+LDPGKPSFTPKKGKPS++MFVGLQGSGKTTTCTK
Sbjct: 61 NLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAV+GVETFK
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KENCDLIIVDTSGRHKQEAALFEEMRQV+EAT PDLVIFVMDSSIGQAAFDQAQAFKQS
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVAEAT-KPDLVIFVMDSSIGQAAFDQAQAFKQS 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V+VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD
Sbjct: 240 VAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
WSGFMDKIHEVVPMDQQPELLQKLSEG+FTLRIMYEQFQNILKMGPIGQVFSMLPGFS+E
Sbjct: 300 WSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAE 359
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
LMPKGRE ESQAKIKRYMTMMDSMTNEELDSSNPKLM DSRIMRIARGSGRQV EVM+M+
Sbjct: 360 LMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMM 419
Query: 421 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480
EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLP MLKQIGG+GGLQNLMKQ
Sbjct: 420 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQ 479
Query: 481 MGSTKD 486
MGS KD
Sbjct: 480 MGSAKD 485
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/495 (88%), Positives = 474/495 (95%), Gaps = 1/495 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQMSN TIIDEK LNECLNEITRALLQ+DV F LV+EMQ+NIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGKP+F PKK K SV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+TFK
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KENCDLIIVDTSGRHKQEA+LFEEMRQV+EAT PDLVIFVMDSSIGQAAFDQAQAFKQS
Sbjct: 181 KENCDLIIVDTSGRHKQEASLFEEMRQVAEAT-KPDLVIFVMDSSIGQAAFDQAQAFKQS 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V+VGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD
Sbjct: 240 VAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
WSGF+DK+ EVVP DQQPELL+KLS+GNFTLRIMY+QFQNIL MGP+ +VFSMLPG S+E
Sbjct: 300 WSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAE 359
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
+MPKG EKESQAKIKRYMTMMDSMTN+ELDSSNPK+ N+SR+MRIARGSGRQVREVMEML
Sbjct: 360 MMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNESRMMRIARGSGRQVREVMEML 419
Query: 421 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480
EEYKRLAKIWSKMKGLKIPK G+MSALSRNMNAQHMSKVLP MLKQIGG+GGLQ+LMKQ
Sbjct: 420 EEYKRLAKIWSKMKGLKIPKNGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQ 479
Query: 481 MGSTKDMMGMFGGGE 495
MGS KDMMGMFGGG+
Sbjct: 480 MGSGKDMMGMFGGGD 494
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/487 (89%), Positives = 469/487 (96%), Gaps = 3/487 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+QQMSNATIIDEKVLNECLNEITRALLQADVQFKLVR+M TNIKKIV
Sbjct: 1 MVLAQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+DLAAGHNKRRIIQQA++NELCK+LDPGKP+FT KKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLEDLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVETF 179
YAY+HQK+GWKPALVCADTFRAGAFDQLKQNATKAKIPFYG SYTESDPV+IAV+GVETF
Sbjct: 121 YAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDGVETF 180
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
KKENCDLIIVDTSGRHKQEAALFEEMRQVSEA PDLVIFVMDSSIGQAAFDQAQAF+Q
Sbjct: 181 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQ-KPDLVIFVMDSSIGQAAFDQAQAFRQ 239
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
SV+VGAVIVTKMDGHAKGGGALS VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG
Sbjct: 240 SVAVGAVIVTKMDGHAKGGGALSRVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
Query: 300 DWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSS 359
D SG ++KI +VVPMDQQPELLQKLSEG+FTLRIMYEQFQ++LKMGP+G VFSMLPGFS+
Sbjct: 300 DLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSA 358
Query: 360 ELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEM 419
E+MP+GREKESQAK KRYMTMMDSMT+EELDS+NPK++ +SRIMRIARGSGR V EVMEM
Sbjct: 359 EMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTESRIMRIARGSGRLVHEVMEM 418
Query: 420 LEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMK 479
LEEYKRLAKI+SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLP MLKQIGG+GGLQNLMK
Sbjct: 419 LEEYKRLAKIFSKMKGLKIPKKGDMSSLSRNMNAQNMSKVLPPQMLKQIGGMGGLQNLMK 478
Query: 480 QMGSTKD 486
QMGS KD
Sbjct: 479 QMGSAKD 485
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/487 (83%), Positives = 452/487 (92%), Gaps = 2/487 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+ QMSNAT+IDEKVL ECLNEI+RALLQ+DVQFK+VR+MQTNI+KIV
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRIIQQA+F ELC MLDPGKP+FTPKKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTPKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEAT-KPDLVIFVMDGSIGQAAFDQAQAFKQS 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
SVGAVI+TK+DGHAKGGGALSAVAATKSPVIFIGTGEH+DEFE+FDVKPFVSRLLGMGD
Sbjct: 240 ASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
SG MDKI +V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVFSMLPGFSSE
Sbjct: 300 LSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSE 359
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
LMPKG EKE QAKIKRYMT+MDSMT ELDS+NPKLM +SRI+RIARGSGRQ+R+V +ML
Sbjct: 360 LMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDML 419
Query: 421 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480
EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LKQ+GG+GGLQ LMKQ
Sbjct: 420 EEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQ 479
Query: 481 MGSTKDM 487
MG KDM
Sbjct: 480 MGG-KDM 485
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/487 (83%), Positives = 451/487 (92%), Gaps = 2/487 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLAQLGGSISRA+ QMSNAT+IDEKVL ECLNEI+RALLQ+DVQFK+VR+MQTNI+KIV
Sbjct: 1 MVLAQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRIIQQA+F ELC MLDPGKP+FT KKGKPSV+MFVGLQGSGKTTTCTK
Sbjct: 61 NLETLAAGTNKRRIIQQAVFTELCNMLDPGKPAFTTKKGKPSVVMFVGLQGSGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 121 YAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLERFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KEN DLII+DTSGRHKQEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 181 KENSDLIIIDTSGRHKQEAALFEEMRQVAEAT-KPDLVIFVMDGSIGQAAFDQAQAFKQS 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
SVGAVI+TK+DGHAKGGGALSAVAATKSPVIFIGTGEH+DEFE+FDVKPFVSRLLGMGD
Sbjct: 240 ASVGAVIITKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDEFEIFDVKPFVSRLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
SG MDKI +V+P DQQPELL KL+EG FTLR++YEQFQN+LKMGPIGQVFSMLPGFSSE
Sbjct: 300 LSGLMDKIQDVMPADQQPELLAKLAEGTFTLRLLYEQFQNLLKMGPIGQVFSMLPGFSSE 359
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
LMPKG EKE QAKIKRYMT+MDSMT ELDS+NPKLM +SRI+RIARGSGRQ+R+V +ML
Sbjct: 360 LMPKGHEKEGQAKIKRYMTIMDSMTAAELDSTNPKLMTESRIIRIARGSGRQIRDVTDML 419
Query: 421 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480
EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LP +LKQ+GG+GGLQ LMKQ
Sbjct: 420 EEYKRLAKMWSKMKGLKMPKNGKMSDLSQNLNIQQMTKALPPQVLKQMGGMGGLQALMKQ 479
Query: 481 MGSTKDM 487
MG KDM
Sbjct: 480 MGG-KDM 485
>sp|P49966|SR542_ARATH Signal recognition particle 54 kDa protein 2 OS=Arabidopsis
thaliana GN=SRP-54B PE=3 SV=2
Length = 497
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/495 (78%), Positives = 437/495 (88%), Gaps = 3/495 (0%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I AIQ+M+N TIIDEK LN+CLNEITRALLQ+DV F LV+EMQTNIKKIV
Sbjct: 1 MVLAELGGRIMSAIQKMNNVTIIDEKALNDCLNEITRALLQSDVSFPLVKEMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS--GKTTTC 118
NL+DLAAGHNKRRII+QAIF+ELCKMLDPGK +F PKK KPSV+MFVGLQG K
Sbjct: 61 NLEDLAAGHNKRRIIEQAIFSELCKMLDPGKSAFAPKKAKPSVVMFVGLQGEVLEKPQLV 120
Query: 119 TKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178
++KG+KPALVCADTFRAGAFDQLKQNATK+KIP+YGSYT SDPV+IAVEGV+
Sbjct: 121 PSMLIIIRRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDR 180
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK 238
FKKENCDLIIVDTSGRHKQ+A+LFEEMRQ+SEAT PDLVIFVMDSSIGQ AF+QA+AFK
Sbjct: 181 FKKENCDLIIVDTSGRHKQQASLFEEMRQISEAT-KPDLVIFVMDSSIGQTAFEQARAFK 239
Query: 239 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 298
Q+V+VGAVI+TKMDGHAKGGG LSAVAATKSPVIFIGTGEHMDEFEVFD KPFVSRLLG
Sbjct: 240 QTVAVGAVIITKMDGHAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLLGN 299
Query: 299 GDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
GD SGF++K+ EVVP DQQPELL+ LS G FTLRIMY+QFQN+L MGP+ +VFSMLPG
Sbjct: 300 GDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMR 359
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
+E+MP+G EKESQAKIKRYMTMMDSMTNEELDSSNPK+ N+SRIMRIARGSGR VREVME
Sbjct: 360 AEMMPEGHEKESQAKIKRYMTMMDSMTNEELDSSNPKVFNESRIMRIARGSGRIVREVME 419
Query: 419 MLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLM 478
MLEEYKRL +W K+KGLK +KG MSALS+N N+Q +SKVLP MLKQIGG+ GLQ+LM
Sbjct: 420 MLEEYKRLTTMWGKVKGLKNLEKGNMSALSKNKNSQQLSKVLPAQMLKQIGGMSGLQSLM 479
Query: 479 KQMGSTKDMMGMFGG 493
KQMGS KD+MGMFGG
Sbjct: 480 KQMGSGKDLMGMFGG 494
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/486 (79%), Positives = 430/486 (88%), Gaps = 17/486 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA+LGG I+RAIQQM+N TIIDEKVLN+ LNEITRALLQ+DV F LV +MQTNIKKIV
Sbjct: 1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIV 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NLDDLAAGHNKR II+QAIF ELC+MLDPGKP+F PKK KPSV+MFVGLQG+GKTTTCTK
Sbjct: 61 NLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YAYYHQKKG+K ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV+IAVEGV+ FK
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KE CDLIIVDTSGRHKQ A+LFEEMRQV+EAT PDLVIFVMDSSIGQAAF+QA+AFK++
Sbjct: 181 KEKCDLIIVDTSGRHKQAASLFEEMRQVAEAT-EPDLVIFVMDSSIGQAAFEQAEAFKET 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
VSVGAVI+TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG GD
Sbjct: 240 VSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
WSG +DK+ EVVP D Q EL++ LS+GNFTLR MY+QFQ L++ P+ Q+FSMLPG S+E
Sbjct: 300 WSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISAE 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
+MPKG +ES+ K+KRYMTMMDSMTN+ELDS NPK+ N+SRIMRIARGSGR VREVMEML
Sbjct: 359 MMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEML 418
Query: 421 EEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480
EEYKR+AK MKG+KIPK G+ MSKV+P MLKQ+GG+ GLQ+LMKQ
Sbjct: 419 EEYKRIAKT---MKGIKIPKNGD------------MSKVIPPQMLKQMGGMSGLQSLMKQ 463
Query: 481 MGSTKD 486
MGS KD
Sbjct: 464 MGSAKD 469
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/494 (72%), Positives = 425/494 (86%), Gaps = 7/494 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA +GGSISRA+ MS+A ++DE VL ECLNEI RAL+Q+DV+FK V ++Q NI+K V
Sbjct: 1 MVLADVGGSISRALA-MSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTV 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
NL+ LAAG NKRRII+ ++ ELCKMLD GKP+F PKKGKP+V+MFVGLQGSGKTTTCTK
Sbjct: 60 NLEALAAGTNKRRIIETSVGKELCKMLDTGKPAFVPKKGKPNVVMFVGLQGSGKTTTCTK 119
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
YA+YHQ+KG+KP+LVCADTFRAGAFDQLKQNATKAKIPFYGSY ESDPV+IAVEG+E F+
Sbjct: 120 YAHYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFR 179
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
+E DLII+DTSGRH QEAALFEEMRQV+EAT PDLVIFVMD SIGQAAFDQAQAFKQS
Sbjct: 180 QEKSDLIIIDTSGRHMQEAALFEEMRQVAEAT-KPDLVIFVMDGSIGQAAFDQAQAFKQS 238
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
SVGAVIVTK+DGHAKGGGALSAVAATKSPVIFIGTGEH+D+F+VF+V+PFV+RLLG GD
Sbjct: 239 ASVGAVIVTKLDGHAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLLGRGD 298
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK+ +VP DQQ EL+ KLSEG FTLR++YEQFQN+LKMGP+ Q+FSMLPGFSSE
Sbjct: 299 LPGLIDKMESIVPADQQSELVAKLSEGAFTLRLLYEQFQNLLKMGPMSQIFSMLPGFSSE 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
LMPKG+EK+S+ K KRYMT+MDSMT ELDS+NPKLM +SRI+R+ARGSGR+V++VMEML
Sbjct: 359 LMPKGQEKQSKEKFKRYMTIMDSMTPAELDSTNPKLMTESRIIRVARGSGRKVKDVMEML 418
Query: 421 EEYKRLAKIWSKMKGLK-IPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMK 479
EEYKRLAK+WSK K IP+ G+MSA + Q M KV+P +++Q+GG GL+ L+K
Sbjct: 419 EEYKRLAKMWSKRNVSKLIPQNGKMSAQA----IQKMLKVMPPQVVQQMGGKSGLEALLK 474
Query: 480 QMGSTKDMMGMFGG 493
Q+G KD M G
Sbjct: 475 QLGGGKDTSKMLAG 488
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/502 (58%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QVS A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AYY+Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QV+ A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/502 (57%), Positives = 388/502 (77%), Gaps = 12/502 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A++ +SNATII+E+VLN L E+ ALL+ADV KLV++++ N+K +
Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+L+++A+G NKR++IQ A+F EL K++DPG ++TP KGK +VIMFVGLQGSGKTTTC+K
Sbjct: 61 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++Q+KGWK L+CADTFRAGAFDQLKQNATKA+IPFYGSYTE DPV IA EGVE FK
Sbjct: 121 LAYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
EN ++IIVDTSGRHKQE +LFEEM QVS A + PD +++VMD+SIGQA QA+AFK
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVSNA-IQPDNIVYVMDASIGQACEAQAKAFKDK 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAATKSP+IFIGTGEH+D+FE F +PF+S+LLGMGD
Sbjct: 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G +DK++E + +D L++KL G FTLR MYEQFQNI+KMGP Q+ M+PGF ++
Sbjct: 300 IEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTD 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES A++K+ MT+MDSM ++ELDS++ K+ + RI R+ARGSG R+V
Sbjct: 359 FMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQ 418
Query: 418 EMLEEYKRLAKIWSKMKGLK-IPKKGEMSA-LSRNMNA---QHMSKVLPQGMLKQIGGVG 472
E+L +Y + A++ KM G+K + K G+MS +S++ A Q M+K++ +L +GG+
Sbjct: 419 ELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 473 GLQNLMKQM--GSTKDMMGMFG 492
GLQ++M+Q G+ +M GM G
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMMG 500
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 572 bits (1473), Expect = e-162, Method: Compositional matrix adjust.
Identities = 294/503 (58%), Positives = 370/503 (73%), Gaps = 15/503 (2%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG I+ A+ T+I+E+VL L EI ALL+ADV KLV +++ N++ +
Sbjct: 1 MVLADLGRKITTALLP-RQRTVINEEVLQAMLKEICTALLEADVNVKLVGKLRQNVRAAI 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ +D+ AG +KRRIIQ ++FNELCK+LDPG P + P KG +VIMFVGLQGSGKTTTCTK
Sbjct: 60 DFEDMGAGLSKRRIIQTSVFNELCKLLDPGVPVWHPTKGHSNVIMFVGLQGSGKTTTCTK 119
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY++QKKGWK LVCADTFRAGAFDQLKQNATKA++PFYGSYTE DPV IA EGVE FK
Sbjct: 120 LAYHYQKKGWKTCLVCADTFRAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFK 179
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
+++ ++IIVDTSGRHKQE +LFEEM QVS+A ++PD +IFVMD +IGQA QA+AFK+
Sbjct: 180 EDSFEVIIVDTSGRHKQEESLFEEMLQVSQA-IDPDNIIFVMDGTIGQACESQARAFKEK 238
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V V +VIVTK+DGHAKGGGALSAVAAT+SP+IFIGTGEH+DE E F KPFVS+LLGMGD
Sbjct: 239 VDVASVIVTKLDGHAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLLGMGD 298
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G M+K+ + + +D+ EL+ KL G FTLR MYEQFQNI+KMGP Q+ M+PGFS +
Sbjct: 299 LEGLMEKVSD-LKLDENEELMDKLKHGQFTLRDMYEQFQNIMKMGPFNQIIGMIPGFSPD 357
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMND--SRIMRIARGSGRQVREVM 417
M KG E+ES AK+KR MTMMDSM + ELD N KL + R R+ARGSG VREV
Sbjct: 358 FMSKGNERESMAKLKRLMTMMDSMNDGELDHPNGAKLFSKQPGRAARVARGSGTSVREVN 417
Query: 418 EMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA-------QHMSKVLPQGMLKQIGG 470
E+L++Y + KM G+K KG L +N+N Q M+K++ +L+Q+GG
Sbjct: 418 ELLKQYSNFSATVKKMGGIKGLFKG--GDLGKNVNPSQMAKLNQQMAKMMDPRVLQQMGG 475
Query: 471 VGGLQNLMKQMGSTKDMMGMFGG 493
+ GLQN+M+Q M F G
Sbjct: 476 MSGLQNMMRQFQQGASNMPGFKG 498
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/501 (48%), Positives = 345/501 (68%), Gaps = 33/501 (6%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG +S A++ ++ TI++E +N+ L E+ AL ++DV L+ +M+ NIK +
Sbjct: 1 MVLADLGNQLSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
LD +AAG NKR+II+Q +F+EL ++LDPG P + P KGK +++MFVGLQG+GKTT+ TK
Sbjct: 61 KLDQMAAGLNKRKIIKQVVFDELIRLLDPGVPLWKPTKGKSNIVMFVGLQGAGKTTSVTK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
AY+++KKG+ A+VCADTFRAGAFDQ++ NA KAKI +YGS TE DPV +A GV+ FK
Sbjct: 121 LAYFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K+ ++IIVDTSGRHKQ++ LFEEM+Q+ E V PD IFVMDSSIGQAA++QA AF+ S
Sbjct: 181 KDGTEIIIVDTSGRHKQDSELFEEMKQI-ETAVKPDNCIFVMDSSIGQAAYEQATAFRSS 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V VG++I+TKMDG++ GGGA+SAVAAT +P+IFIGTGEH+ + E+FD FVS+LLG GD
Sbjct: 240 VKVGSIIITKMDGNSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFVSKLLGYGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G ++KI EV+P D L+++++G FTLR M +QFQ I+++GPI ++ M+PG +
Sbjct: 300 MKGMLEKIKEVIPEDSTS--LKEIAQGKFTLRSMQQQFQQIMQLGPIDKLVQMIPGMNQ- 356
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
+P+ + E K+K Y+ ++DS++ +ELD P + RI+ IA+GSGR EV+E+L
Sbjct: 357 -LPQLQGNEGGLKLKAYINILDSLSEKELDGKKP--ITQKRIITIAQGSGRHPNEVVELL 413
Query: 421 EEYKRLAKI----------WSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGG 470
E++K K+ S M G PK E + + MNA GG
Sbjct: 414 EQHKTFEKLIGKGGPGGGLGSLMAGKGGPKNMEQAM--KQMNAN--------------GG 457
Query: 471 VGGLQNLMKQMGSTKDMMGMF 491
+ GL N +K MG D+ MF
Sbjct: 458 MQGLMNSLKGMGGMGDLAKMF 478
>sp|O15821|SRP54_ENTHI Signal recognition particle 54 kDa protein OS=Entamoeba histolytica
PE=3 SV=1
Length = 487
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/492 (47%), Positives = 331/492 (67%), Gaps = 26/492 (5%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL+QLG S+ A+++M+++T++DE+V+N L EI +LL DV +R+M NIKK +
Sbjct: 1 MVLSQLGSSLVTALRKMTSSTVVDEEVINTLLKEIETSLLGEDVNPIFIRQMVNNIKKKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N +D+ G +KR++I+ ++F EL ++DP +F PKKGK V+M VGLQG+GKTTT TK
Sbjct: 61 NSEDIPDGIDKRKLIKDSVFEELINLVDPKTEAFKPKKGKTCVLMMVGLQGAGKTTTITK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y++ +G+KPA+V ADTFRAGA++QL+ NA +A +PF+G ESDPV++A EGV TF+
Sbjct: 121 LALYYKNRGYKPAVVGADTFRAGAYEQLQMNAKRAGVPFFGIKEESDPVKVASEGVRTFR 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
KE D+I+VDTSGRHKQ+ LF+EM+ V +A + PD +IFVMD +IGQAAF QA+AFK +
Sbjct: 181 KEKNDIILVDTSGRHKQDKELFKEMQSVRDA-IKPDSIIFVMDGAIGQAAFGQAKAFKDA 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V VG+VI+TK+DGH+ GGGALSAVAATKSP+IFIGTGE ++E E FD + FV +LLGMGD
Sbjct: 240 VEVGSVIITKLDGHSNGGGALSAVAATKSPIIFIGTGEKVNEIEEFDAESFVRQLLGMGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G + + +++ L EG T+R EQ N+ KMG +G + M+ G +
Sbjct: 300 LKGIAKLAKDFAENAEYKTMVKHLQEGTLTVRDWKEQLSNLQKMGQLGNIMQMI-GLNHP 358
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND-SRIMRIARGSGRQVREVMEM 419
+ G + K K +M ++DSMT+ ELD S ++ND SRI R+ARGSGR +REV E+
Sbjct: 359 MFQGG---NIEKKFKVFMVILDSMTDRELDGSAKTMLNDESRIRRLARGSGRDIREVNEL 415
Query: 420 LEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNA--------QHMSKVLPQGMLKQIGGV 471
E+ K + ++ PK M A N NA Q M ++LP+G+ +
Sbjct: 416 FEQIKLFQQCIDRL-----PKA--MRAQLGNCNAQPNEAAMMQQMQRMLPKGVNQ----- 463
Query: 472 GGLQNLMKQMGS 483
LQ LMKQM +
Sbjct: 464 AQLQQLMKQMNA 475
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/436 (50%), Positives = 320/436 (73%), Gaps = 5/436 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV A LG ++ A+ S AT ++E++++ L I ALL+ DV +LV+E+++NIKK +
Sbjct: 1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKI 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
N+ L G N +RI+Q+A+F+ELC ++DP +FTPKKG+PSVIM VGLQGSGKTTTC+K
Sbjct: 61 NVSTLPQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSK 120
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A ++Q++G K LV ADTFRAGAFDQLKQNA KA++P++GSYTE+DPV IA EGV+ FK
Sbjct: 121 LALHYQRRGLKSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
+ D+IIVDTSGRH+QE LF EM ++S+A + PD I ++D+SIGQAA Q++AFK++
Sbjct: 181 NDRFDVIIVDTSGRHQQEQELFAEMVEISDA-IRPDQTIMILDASIGQAAESQSKAFKET 239
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
GAVI+TK+DGHAKGGGALSAVAATK+P++FIGTGEH+++ E F + F+S+LLG+GD
Sbjct: 240 ADFGAVIITKLDGHAKGGGALSAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGD 299
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE 360
G M+ + + D++ +++ L +G FT+R +Q NI+K+GP+ ++ SM+PG S+
Sbjct: 300 LEGLMEHVQS-LDFDKK-NMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSN- 356
Query: 361 LMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND-SRIMRIARGSGRQVREVMEM 419
+M ++E ++KR + ++DSMT +ELDS + SR++R+ARGSG V EV E
Sbjct: 357 MMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEET 416
Query: 420 LEEYKRLAKIWSKMKG 435
+ + + A++ K+ G
Sbjct: 417 ISQVRVFAQMAKKIGG 432
>sp|Q00179|SRP54_ASPNG Signal recognition particle 54 kDa protein homolog OS=Aspergillus
niger GN=srpA PE=3 SV=1
Length = 534
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/440 (49%), Positives = 301/440 (68%), Gaps = 5/440 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEK-VLNECLNEITRALLQADVQFKLVREMQTNIKKI 59
MVL LG I+ A+ ++ + +DEK ++ + EI ALL ADV +LV+ ++ +IK
Sbjct: 1 MVLQDLGRRINAAVNDLTRSNNLDEKQAFDDMIKEICAALLSADVNVRLVQSLRKSIKSS 60
Query: 60 VNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
VN L NK+R+IQ+A+F+EL ++DP F PKKG+ +VIMFVGLQG+GKTTTCT
Sbjct: 61 VNFASLPPAVNKKRLIQKAVFDELVSLVDPHAEPFRPKKGRSNVIMFVGLQGAGKTTTCT 120
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A ++Q +G+K ALVCADTFRAGAFDQLKQNATKAKIP+YGS T++DP +A EGV F
Sbjct: 121 KLARHYQMRGFKTALVCADTFRAGAFDQLKQNATKAKIPYYGSLTQTDPAIVAAEGVAKF 180
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
KKE ++IIVDTSGRHKQE LF EM Q+ A V PD I V+DS+IGQAA Q+ AFK
Sbjct: 181 KKERFEIIIVDTSGRHKQEEELFTEMTQIQTA-VTPDQTILVLDSTIGQAAEAQSSAFKA 239
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ GA+I+TK DGHA GGGA+SAVAAT +P+I++GTGEH+ + E F+ K F+ +LLGMG
Sbjct: 240 TADFGAIIITKTDGHAAGGGAISAVAATHTPIIYLGTGEHLMDLERFEPKAFIQKLLGMG 299
Query: 300 DWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D +G ++ + V E + +SEG +TLR E +I+KMGP+ ++ M+PG S
Sbjct: 300 DMAGLVEHVQAVTKDSASAKETYKHISEGIYTLRDFRENITSIMKMGPLSKLSGMIPGLS 359
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND-SRIMRIARGSGRQVREVM 417
+ L +++ K++R + + DSMT ELD + SR++RIA GSG VREV
Sbjct: 360 N-LTAGLDDEDGSMKLRRMIYIFDSMTAAELDGDGKMFVEQPSRMVRIACGSGTTVREVE 418
Query: 418 EMLEEYKRLAKIWSKMKGLK 437
++L +++ +A + ++ G K
Sbjct: 419 DLLSQHRMMAGMAKRVGGQK 438
>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SRP54 PE=3 SV=2
Length = 536
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/461 (49%), Positives = 313/461 (67%), Gaps = 20/461 (4%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG I+ A +S IDE L+ L E+ ALL++DV KLV +++ +K V
Sbjct: 1 MVLEDLGKRINGAFANLSKGGDIDE-ALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSV 59
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML--DPGKPS---FTPKKGKPSVIMFVGLQGSGKT 115
G +K+++IQ+A+F+EL ++ D S F P+KGK +V+MFVGLQGSGKT
Sbjct: 60 KA--TPNGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKT 117
Query: 116 TTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175
T+CTK A Y+Q++G+K LVCADTFRAGAFDQLKQNATKAKIPF+GSYTE+DPV +A EG
Sbjct: 118 TSCTKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEG 177
Query: 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ 235
V FKKE ++IIVDTSGRH+QE+ LF EM + A V PD I V+D+SIGQAA Q++
Sbjct: 178 VAKFKKEKFEIIIVDTSGRHRQESELFTEMVDIG-AAVKPDSTIMVLDASIGQAAEPQSR 236
Query: 236 AFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 295
AFK + G++I+TKMDGHAKGGGA+SAVAAT +P+IFIGTGEH+ + E F K F+S+L
Sbjct: 237 AFKDASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKL 296
Query: 296 LGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP 355
LG+GD G M+ + + +DQ+ + ++ + EG FTL + +Q N+LKMG + + M+P
Sbjct: 297 LGIGDLQGLMETMQS-LNLDQK-KTMEHIQEGIFTLADLRDQMGNMLKMGSLSSIAGMIP 354
Query: 356 GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMN-DSRIMRIARGSGRQVR 414
G S + ++E +IKR + ++DSM +ELDS SRI R+ARGSG +R
Sbjct: 355 GLSG-MASSISDEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSGTSIR 413
Query: 415 EVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQH 455
EV E+L++ K +A + S+M G K G M SR NAQ+
Sbjct: 414 EVEEVLQQQKMMASMASRMGG----KNGMM---SRMQNAQN 447
>sp|O42816|SRP54_CANAX Signal recognition particle 54 kDa protein homolog OS=Candida
albicans GN=SRP54 PE=2 SV=1
Length = 556
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/450 (47%), Positives = 303/450 (67%), Gaps = 28/450 (6%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVLA LG + A+ + + + D+++ + + +I ALL++DV KLV +++ NIK +
Sbjct: 1 MVLADLGSRLRGALSSVESGS--DDEI-QQMIKDICSALLESDVNVKLVAKLRGNIKNKI 57
Query: 61 ---NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPS--------------- 102
N+ + NKR+ +Q+ IF+ELC ++D PKK S
Sbjct: 58 DESNVSKETSAMNKRKKLQKIIFDELCALVDSNVEPPKPKKLSTSTKTINGKKVRLSKES 117
Query: 103 --VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160
VIMFVGLQG+GKTT+CTK A Y++K+G+K LVCADTFRAGAFDQLKQNA KA IP+Y
Sbjct: 118 SHVIMFVGLQGAGKTTSCTKLAVYYKKRGFKVGLVCADTFRAGAFDQLKQNAIKANIPYY 177
Query: 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIF 220
GSY E DPV+IA EGV+ FK+E D+IIVDTSGRH+QE LF EM Q+ EA V P I
Sbjct: 178 GSYLEPDPVKIAFEGVQKFKQEKFDIIIVDTSGRHRQEEQLFTEMVQIGEA-VQPTQTIM 236
Query: 221 VMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM 280
VMD SIGQAA QA+AFK+S + G++I+TKMDGHAKGGGA+SAVAATK+P++FIGTGEH+
Sbjct: 237 VMDGSIGQAAESQARAFKESSNFGSIILTKMDGHAKGGGAISAVAATKTPIVFIGTGEHV 296
Query: 281 DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV-VPMDQ-QPELLQKLSEGNFTLRIMYEQF 338
+ E+F F+S+LLG+GD G ++ + + + D+ + ++ + EG FTLR Q
Sbjct: 297 GDLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQM 356
Query: 339 QNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMN 398
N LKMGP+ + SM+PG S+ +M + ++E+ KIK + +MDSMT +EL+ +
Sbjct: 357 NNFLKMGPLTNIASMIPGLSN-IMSQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIK 415
Query: 399 D-SRIMRIARGSGRQVREVMEMLEEYKRLA 427
+ SRI+R+ARGSG V EV +L++++ ++
Sbjct: 416 EPSRIVRVARGSGCAVVEVEMILQQHRMMS 445
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/438 (46%), Positives = 298/438 (68%), Gaps = 11/438 (2%)
Query: 1 MVLAQLGGSISRAIQQ-MSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKI 59
MVLA LG I+ A+ +SN ++ L I ALL++DV LV +++ NI+
Sbjct: 1 MVLADLGKRINSAVNNAISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQ 60
Query: 60 VNLDDLA----AGHNKRRIIQQAIFNELCKMLD---PGKPSFTPKKGKPSVIMFVGLQGS 112
+ ++ + +++IQ+ +F+ELCK++ + +F PKK K ++IMFVGLQGS
Sbjct: 61 LLSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGS 120
Query: 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172
GKTT+CTK A Y+ K+G+K LVCADTFRAGAFDQLKQNA +A+IPFYGSYTE+DP ++A
Sbjct: 121 GKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVA 180
Query: 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD 232
EG+ FKKE D+IIVDTSGRH QE LF+EM ++S + P+ I V+D+SIGQAA
Sbjct: 181 EEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNV-IKPNQTIMVLDASIGQAAEQ 239
Query: 233 QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFV 292
Q++AFK+S GA+I+TKMDGHA+GGGA+SAVAAT +P+IFIGTGEH+ + E F K F+
Sbjct: 240 QSKAFKESSDFGAIILTKMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFI 299
Query: 293 SRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFS 352
S+LLG+GD +++ V + ++ + +G FTL +Q Q I+KMGP+ +
Sbjct: 300 SKLLGIGDIESLFEQLQTVSNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQ 359
Query: 353 MLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND-SRIMRIARGSGR 411
M+PG S+ + G E+ SQ K+K+ + ++DSMT EEL+S + + +R++R+A+GSG
Sbjct: 360 MIPGMSNMMNQVGEEETSQ-KMKKMVYVLDSMTKEELESDGRMFIEEPTRMVRVAKGSGT 418
Query: 412 QVREVMEMLEEYKRLAKI 429
V EV +L + + +A++
Sbjct: 419 SVFEVEMILMQQQMMARM 436
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/442 (45%), Positives = 296/442 (66%), Gaps = 8/442 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE + E + +I RALLQADV KLV ++ I+K
Sbjct: 1 MALEKLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
++ AG +K+ I + ++ EL K L KP K KP+VI+ VG+QGSGKTT+
Sbjct: 61 LEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKP--LEIKHKPTVILTVGIQGSGKTTSVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QL+Q I +G E D V++A EGVE F
Sbjct: 119 KLARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEKDAVKLAREGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
+++ D+IIVD++GRHK+E L EEMRQ+SEA + P VI V+D +IGQ A++QA AFK+
Sbjct: 179 REKGVDVIIVDSAGRHKEEKGLIEEMRQISEA-IKPHEVILVIDGTIGQQAYNQAMAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+DG AKGGGALSAVAAT +P+ FIGTGE +D+ E FD K FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLG 297
Query: 300 DWSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++KI E+ + + E ++K G F L+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLG 357
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L P+ + + K+KRY +MDSMT EEL+ NP+++N SRI RIARGSG EV E
Sbjct: 358 YSL-PEDAVRVGEEKLKRYKVIMDSMTEEELE--NPEIINYSRIKRIARGSGATTAEVRE 414
Query: 419 MLEEYKRLAKIWSKMKGLKIPK 440
+L +Y ++ K++ + K+ K
Sbjct: 415 LLNQYNQMKKMFKSLNKRKLAK 436
>sp|C5A233|SRP54_THEGJ Signal recognition particle 54 kDa protein OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=srp54 PE=3 SV=1
Length = 448
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/442 (44%), Positives = 294/442 (66%), Gaps = 8/442 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE ++ E + +I RAL+Q+DV +LV ++ I++
Sbjct: 1 MALEKLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-KGKPSVIMFVGLQGSGKTTTCT 119
+ AG + R + + ++ EL K+L GK + + + KP++++ VG+QGSGKTTT
Sbjct: 61 LNEKPPAGVSPREHVIKIVYEELTKLL--GKEAVPLEIREKPTILLTVGIQGSGKTTTIA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A + QK+G+K LVC DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARHLQKRGYKVGLVCTDTWRPGAYYQLKQLVEPYNIEVFGDPGEKDAIKLAREGVEYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
K + D+IIVDT+GRHK+E+ L EEM+Q+SEA + P VI V+D +IGQ A+ QA AFK+
Sbjct: 179 KDKGVDVIIVDTAGRHKEESGLIEEMKQISEA-IKPHEVILVIDGTIGQQAYHQALAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+DG AKGGGALSAVAAT +P+ FIG GE +D+ E FD K FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLG 297
Query: 300 DWSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++KI E+ + + E ++K G F L+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLG 357
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L P + + K++RY +MDSMT EEL+ NP ++N SRI RIARGSG REV E
Sbjct: 358 YSL-PDEAVRVGEEKLRRYRIIMDSMTEEELE--NPDIINYSRIKRIARGSGTSTREVRE 414
Query: 419 MLEEYKRLAKIWSKMKGLKIPK 440
+L +Y ++ K++ + K+ K
Sbjct: 415 LLAQYNQMRKMFKNLDKRKLAK 436
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/454 (43%), Positives = 300/454 (66%), Gaps = 14/454 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L +LG +++ A+++++ ++ +DE + E + +I RAL+QADV +LV ++ I+K
Sbjct: 1 MALEKLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
++ G +K+ I + ++ EL K L KP K KP+V++ VG+QGSGKTT+
Sbjct: 61 LEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTVLLTVGIQGSGKTTSIA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K LVC+DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEKDAIKLAKEGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
+++ D+IIVD++GRHK+E +L EEM+Q+S A + P VI V+D +IGQ A++QA AFK+
Sbjct: 179 REKGVDIIIVDSAGRHKEEKSLIEEMKQIS-AAIKPHEVILVIDGTIGQQAYNQALAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+DG AKGGGALSAVAAT +P+ FIG GE +D+ E FD K FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRFVSRLLGLG 297
Query: 300 DWSGFMDKIHEVVPMDQ-QPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++K E+ + + E L+K +G F L+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMG 357
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L P + + ++K++ +MDSMT EEL+ +P+++N SRI RIARGSG ++EV E
Sbjct: 358 YSL-PDDAVRVGEERLKKFKVIMDSMTEEELE--HPEIINYSRIKRIARGSGTSIQEVRE 414
Query: 419 MLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMN 452
+L +Y ++ K++ M K ++S ++R N
Sbjct: 415 LLHQYNQMKKMFKSM------DKRKLSKMARKFN 442
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/452 (42%), Positives = 300/452 (66%), Gaps = 14/452 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG +++ +++++ A+ +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP++++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGIQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QL+Q + I +G+ E D +++A EGV+ F
Sbjct: 119 KLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
K + D+IIVDT+GRHK++ AL EEM+Q+S ++P VI V+D +IGQ A++QA AFK+
Sbjct: 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISN-VIHPHEVILVIDGTIGQQAYNQALAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+DG AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLG 297
Query: 300 DWSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++K E+ ++ + E +++ G FTL+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG 357
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L P + ++K++ +MDSMT EEL NP+++N SRI RIARGSG ++V E
Sbjct: 358 YSL-PDDVISIGEERLKKFKVIMDSMTEEEL--LNPEIINYSRIKRIARGSGTSTKDVKE 414
Query: 419 MLEEYKRLAKIWSKMKGLKIPKKGEMSALSRN 450
+L++Y+++ K++ M K ++S L+R
Sbjct: 415 LLDQYRQMKKLFKSM------NKRQLSRLARR 440
>sp|A6UQJ8|SRP54_METVS Signal recognition particle 54 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54
PE=3 SV=1
Length = 450
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/446 (44%), Positives = 292/446 (65%), Gaps = 15/446 (3%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + +++EL K+L +P K P K SVI+ VG+QGSGKTT+
Sbjct: 61 EEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDP--SKKSVILLVGIQGSGKTTSSA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVET 178
K A Y QKKG KPAL+ AD +R A+ QLKQ + K +P +G T++ PV I EG+E
Sbjct: 119 KLARYIQKKGMKPALIAADIYRPAAYQQLKQLSEKINVPLFGDETKTKTPVEIVKEGIEK 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK 238
KK D++I+DT+GRHK+E +L EEM+Q+ E T NP+ +I V+D ++GQ A +QA+AFK
Sbjct: 179 LKK--SDVLIIDTAGRHKEEESLLEEMKQMKEIT-NPNEIILVIDGTLGQQAKNQAKAFK 235
Query: 239 QSVS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297
+VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SRLLG
Sbjct: 236 DAVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLG 295
Query: 298 MGDWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPG 356
MGD ++K +V MD+ E + + +G FTL +Y Q + I KMGP+ Q+ M+PG
Sbjct: 296 MGDLDSLLEKTEDV--MDESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPG 353
Query: 357 FSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREV 416
F MPK + ++ K+KRY MMDSMT EE NP+L+ SR+ RIA+G+G + E+
Sbjct: 354 FGGN-MPKEAAQLTEQKLKRYKIMMDSMTMEE--KENPELIKTSRLQRIAKGAGVKQDEI 410
Query: 417 MEMLEEYKRLAKIWSKMKGLKIPKKG 442
++L+ Y + +K K+PK G
Sbjct: 411 KDLLKYYATTKNAFGNLKRGKMPKMG 436
>sp|O59307|SRP54_PYRHO Signal recognition particle 54 kDa protein OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=srp54 PE=3 SV=3
Length = 443
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/457 (44%), Positives = 292/457 (63%), Gaps = 22/457 (4%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG ++S A+++++ A +DE ++ E + +I RALLQADV +LV ++ I++
Sbjct: 1 MVLDSLGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP+V++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTVLLTVGVQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A Y QK+G+K +VC+DT+R GA+ QLKQ I +G E D V++A EGVE F
Sbjct: 119 KLARYFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAVKLAKEGVEYF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
K + DLIIVDT+GRHK+E L EEMR +SE + P VI V+D +IGQ A++QA AFK+
Sbjct: 179 KTRDVDLIIVDTAGRHKEEKDLIEEMRMISE-EIRPHEVILVIDGTIGQQAYNQALAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+D AKGGGALSAVAAT +P+ FIG GE +D+ E FD FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPARFVSRLLGLG 297
Query: 300 DWSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++K E+ ++ E + + G FTL+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG 357
Query: 359 ----SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVR 414
EL+ G E +++++ +MDSMT EEL NP+++N SRI RIARGSG ++
Sbjct: 358 YSLPDELISVGEE-----RLRKFKVIMDSMTEEEL--MNPEIINYSRIKRIARGSGTSIK 410
Query: 415 EVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNM 451
+V E+L +Y ++ K + M K ++S L+R
Sbjct: 411 DVKELLTQYNQMKKFFKSM------NKRQLSRLARRF 441
>sp|Q9V1E8|SRP54_PYRAB Signal recognition particle 54 kDa protein OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=srp54 PE=3 SV=1
Length = 443
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/435 (44%), Positives = 284/435 (65%), Gaps = 8/435 (1%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG ++S A+++++ A +DE ++ E + +I RAL+QADV +LV ++ I++
Sbjct: 1 MVLDSLGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKML-DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ AG +K+ I + ++ EL K L KP K KP++++ VG+QGSGKTTT
Sbjct: 61 LEEKPPAGISKKEHIIKIVYEELTKFLGTEAKP--IEIKEKPTILLMVGVQGSGKTTTVA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K A + QK+G+K +VC+DT+R GA+ QLKQ I +G E D +++A EGVE F
Sbjct: 119 KLARHFQKRGYKVGVVCSDTWRPGAYHQLKQLLDPYHIEVFGDPNEKDAIKLAKEGVEHF 178
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
K + DLIIVDT+GRHK+E L EEMR +S + P VI V+D +IGQ A++QA AFK+
Sbjct: 179 KAKGVDLIIVDTAGRHKEEKDLIEEMRMISN-EIKPHEVILVIDGTIGQQAYNQALAFKE 237
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
+ +G++IVTK+D AKGGGALSAVAAT +P+ FIGTGE +D+ E FD FVSRLLG+G
Sbjct: 238 ATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLG 297
Query: 300 DWSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D G ++K E+ ++ E L++ +G FTL+ MY Q + + KMGP+ Q+ M+PG
Sbjct: 298 DIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG 357
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L P + +++++ +MDSMT EEL NP ++N SRI RIARGSG V++V E
Sbjct: 358 YSL-PDEVISVGEERLRKFKVIMDSMTEEEL--MNPDIINYSRIKRIARGSGTSVKDVKE 414
Query: 419 MLEEYKRLAKIWSKM 433
+L +Y ++ K + M
Sbjct: 415 LLNQYNQMKKFFKSM 429
>sp|Q57565|SRP54_METJA Signal recognition particle 54 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp54 PE=1 SV=1
Length = 451
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 197/437 (45%), Positives = 283/437 (64%), Gaps = 13/437 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++++A+ ++ A +D+K++ E + +I RAL+QADV KLV +M I++
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + ++ EL K+L + K PKK +VI+ VG+QGSGKTTT
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKK--QNVILLVGIQGSGKTTTAA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DPVRIAVEGVET 178
K A Y QK+G KPAL+ ADT+R A++QLKQ A K +P YG T + PV I EG+E
Sbjct: 119 KLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK 238
FKK D++I+DT+GRHK+E L EEM+Q+ E T NPD +I V+D +IGQ A QA+AFK
Sbjct: 179 FKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEIT-NPDEIILVIDGTIGQQAGIQAKAFK 235
Query: 239 QSV-SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297
++V +G++IVTK+DG AKGGGALSAVA TK+P+ FIG GE +D+ E FD K F+SRLLG
Sbjct: 236 EAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLG 295
Query: 298 MGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGF 357
MGD ++K ++V ++ E + + G FTL + Q + I MG + ++ SM+PGF
Sbjct: 296 MGDLESLLEKAEDMVD-EKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF 354
Query: 358 SSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVM 417
MPK ++AKIK+Y ++ SMT EE NPK++ SRI RIARGSG +V
Sbjct: 355 GGA-MPKELSHLTEAKIKKYKVIISSMTKEE--RENPKIIKASRIRRIARGSGTTENDVR 411
Query: 418 EMLEEYKRLAKIWSKMK 434
E+L Y+ K++
Sbjct: 412 EVLRYYETTKNAIDKLR 428
>sp|A6VHE0|SRP54_METM7 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3
SV=1
Length = 450
Score = 355 bits (911), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 192/454 (42%), Positives = 288/454 (63%), Gaps = 12/454 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL +L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+II+DT+GRHK+E L EMR++ + T NP +I V+D ++GQ A +QA+AFK+S
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMREMKDLT-NPTEIILVIDGTLGQQAKNQAKAFKES 237
Query: 241 VS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LGMG
Sbjct: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMG 297
Query: 300 DWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D ++K ++ MD+ E + + +G FTL +Y Q + I KMGP+ Q+ SM+PG
Sbjct: 298 DLDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L PK + ++ K+KRY MMDSMT EE NP+L+ SR+ RIA+G+G + E+ +
Sbjct: 356 GNL-PKEAAQLTEDKLKRYKIMMDSMTMEE--KENPELIKASRLQRIAKGAGVKQEEIKD 412
Query: 419 MLEEYKRLAKIWSKMKGLKIPK-KGEMSALSRNM 451
+L+ Y + +K K+PK G+M + R +
Sbjct: 413 LLKYYSTTKNAFGNLKRGKMPKMGGQMGQIMRQL 446
>sp|A9A9B0|SRP54_METM6 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3
SV=1
Length = 450
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 192/454 (42%), Positives = 288/454 (63%), Gaps = 12/454 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+II+DT+GRHK+E L EM+++ + T NP+ +I V+D ++GQ A +QA+AFK S
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLT-NPNEIILVIDGTLGQQAKNQAKAFKDS 237
Query: 241 VS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG G
Sbjct: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFG 297
Query: 300 DWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D ++K ++ MD+ E + + +G FTL +Y Q + I KMGP+ Q+ SM+PG
Sbjct: 298 DLDSLLEKTEDI--MDESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
MPK + ++ K+KRY MMDSMT EE NP+L+ SR+ RIARG+G + E+ +
Sbjct: 356 GN-MPKEAAQLTEDKLKRYKIMMDSMTMEE--KENPELIKTSRLQRIARGAGVKPEEIKD 412
Query: 419 MLEEYKRLAKIWSKMKGLKIPK-KGEMSALSRNM 451
+L+ Y + +K K+PK G+M + R +
Sbjct: 413 LLKYYSTTKNAFGNLKRGKMPKMGGQMGQIMRQL 446
>sp|A6UWG4|SRP54_META3 Signal recognition particle 54 kDa protein OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3
SV=1
Length = 450
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 188/445 (42%), Positives = 288/445 (64%), Gaps = 13/445 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG +I+ A+ ++ NAT +D+K++ E + +I +AL+QADV KLV M I++
Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKML--DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCT 119
+ G +K+ I + +++EL K+L + K PK ++I+ VG+QGSGKTT+
Sbjct: 61 YESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKN--KNIILLVGIQGSGKTTSAA 118
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVET 178
K A QK+G+KPAL+ AD +R A+ QLKQ + K IP +G T++ P+ I EG++
Sbjct: 119 KLARTLQKRGFKPALIAADVYRPAAYQQLKQLSEKIHIPLHGDPTKTKTPMEITEEGLKQ 178
Query: 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK 238
FKK D+II+DT+GRHK+E+ L EEM+++ E NP+ +I V+D ++GQ A +QA+AFK
Sbjct: 179 FKKN--DVIIIDTAGRHKEESGLLEEMKEMKE-KFNPEEIILVIDGTLGQQAKNQAKAFK 235
Query: 239 QSV-SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297
+V ++G++++TKMDG AKGGGALSAVA +P+ FIGTGE +D+ E FD K F+SRLLG
Sbjct: 236 DAVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLG 295
Query: 298 MGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGF 357
MGD ++K +++ D E L + G FTL +Y Q + I KMG + Q+ +M+PG
Sbjct: 296 MGDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGM 354
Query: 358 SSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVM 417
+ L PKG ++ K+K+Y +MDSMT+ E NP ++ SR+ RIA+G+G + E+
Sbjct: 355 GTNL-PKGAADITEHKLKKYKIIMDSMTSTE--KENPDIIKTSRMKRIAKGAGVKQEEIK 411
Query: 418 EMLEEYKRLAKIWSKMKGLKIPKKG 442
E+L+ Y + MK K+ K G
Sbjct: 412 ELLKYYSTTKNAFQNMKSGKMLKMG 436
>sp|Q6LX03|SRP54_METMP Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp54 PE=3 SV=1
Length = 450
Score = 342 bits (877), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/454 (42%), Positives = 291/454 (64%), Gaps = 12/454 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+II+DT+GRHK+E L EM+++ + T NP+ +I V+D ++GQ A +QA+AFK+S
Sbjct: 181 K--VDVIIIDTAGRHKEEEGLLAEMKEMKDLT-NPNEIILVIDGTLGQQAKNQAKAFKES 237
Query: 241 VS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG+G
Sbjct: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
Query: 300 DWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D ++K ++ MD+ E + + +G FTL +Y Q + I KMGP+ Q+ SM+PG
Sbjct: 298 DLDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
MPK + ++AK+KRY MMDSMT EE NP+L+ SR+ RIA+G+G + E+ +
Sbjct: 356 GN-MPKEAAQLTEAKLKRYKIMMDSMTMEE--KENPELIKTSRLQRIAKGAGVKQEEIKD 412
Query: 419 MLEEYKRLAKIWSKMKGLKIPK-KGEMSALSRNM 451
+L+ Y + +K K+PK G+M + R +
Sbjct: 413 LLKYYSTTKNAFGNLKRGKMPKMGGQMGQIMRQL 446
>sp|A4FVX4|SRP54_METM5 Signal recognition particle 54 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3
SV=1
Length = 450
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 191/454 (42%), Positives = 291/454 (64%), Gaps = 12/454 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L +LG ++S A+ ++ NAT +D+K++ E + +I +AL+Q+DV KLV M I++
Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
+ G +K+ I + +++EL K+L K SVI+ +G+QGSGKTT+ K
Sbjct: 61 EEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180
A Y QKKG +P L+ AD +R A+ QLKQ + K +P +G T + PV I EG+E K
Sbjct: 121 ARYIQKKGLRPGLIAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVDITKEGMEKLK 180
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+II+DT+GRHK+E +L EM+++ + T NP+ +I V+D ++GQ A +QA+AFK+S
Sbjct: 181 K--VDVIIIDTAGRHKEEESLLAEMKEMKDLT-NPNEIILVIDGTLGQQAKNQAKAFKES 237
Query: 241 VS-VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
VS +G+++VTK+DG AKGGGALSAVA +P+ FIGTGE +D E FD K F+SR+LG+G
Sbjct: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297
Query: 300 DWSGFMDKIHEVVPMDQQP-ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFS 358
D ++K ++ MD+ E + + +G FTL +Y Q + I KMGP+ Q+ SM+PG
Sbjct: 298 DLDSLLEKTEDI--MDESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMG 355
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
L PK + ++ K+KRY MMDSMT EE NP+L+ SR+ RIA+G+G + E+ +
Sbjct: 356 GNL-PKEAAQLTEDKLKRYKIMMDSMTLEE--KENPELIKTSRLQRIAKGAGVKQDEIKD 412
Query: 419 MLEEYKRLAKIWSKMKGLKIPK-KGEMSALSRNM 451
+L+ Y + +K K+PK G+M + R +
Sbjct: 413 LLKYYSTTKNAFGNLKRGKMPKMGGQMGQIMRQL 446
>sp|Q12ZG8|SRP54_METBU Signal recognition particle 54 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1
Length = 439
Score = 337 bits (865), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 190/439 (43%), Positives = 271/439 (61%), Gaps = 17/439 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDEK + E + +I RALLQADV KLV +M ++IK+
Sbjct: 1 MVMDKLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+++ G N R + + ++ EL ++ G+ + P K P IM +GLQGSGKTTT +K
Sbjct: 61 LKEEVPPGMNPREHVIKIVYQELISIV--GRSADIPLK--PQTIMMIGLQGSGKTTTTSK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
+ Y Q+KG KPA++CADTFR GA+ QLK K +PFYG D V I G+
Sbjct: 117 LSRYFQRKGLKPAVICADTFRPGAYQQLKTLCDKLNVPFYGEVGNPDAVGIVERGLAELG 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D++IVDT+GRH EA L +EM Q+ E PD + V+D +IGQ A +QA+AF S
Sbjct: 177 KN--DVLIVDTAGRHSLEADLIDEMEQIHE-IAQPDYKLLVLDGAIGQQASEQARAFNDS 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V + V+++K+DG AKGGGALSAV+ T S + FIG GE D+ E F+ F+SRLLGMGD
Sbjct: 234 VGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGD 293
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP--GFS 358
++K E + ++ ++ + G FTL+ MY Q + + KMGP+ Q+ MLP G
Sbjct: 294 IKSLIEKAEET--LSEEDIDMEAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMG 351
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
++L K ++ K+K Y +MDSMT EEL NP+L+ SRI RI+ GSG V E
Sbjct: 352 AKLSDDAY-KVTEDKMKGYRVLMDSMTEEEL--LNPRLLGSSRIKRISLGSGSSPDAVRE 408
Query: 419 MLEEYKRLAKIWSKMKGLK 437
+L+ YK + + MKGL+
Sbjct: 409 LLKYYKMM---QNAMKGLR 424
>sp|A0B638|SRP54_METTP Signal recognition particle 54 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1
Length = 444
Score = 334 bits (856), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 191/438 (43%), Positives = 276/438 (63%), Gaps = 16/438 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LGGS+ A++++++AT +D+ ++++ + +I RALLQADV KLV + I++
Sbjct: 1 MVLDNLGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N R + ++ EL ++ G+ + P K IM VGLQGSGKTTT K
Sbjct: 61 LNEKPPAGMNPREHVINIVYQELINLI--GRGTDIPLK--KQTIMLVGLQGSGKTTTAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q++G + A++CADTFRAGA+DQLK + I FYG + +A G+E K
Sbjct: 117 LATYFQRRGLRTAVICADTFRAGAYDQLKALCDRQGIFFYGEKGNENAPEVAKNGLEATK 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+ IVDT+GRH E+ L +EM+ + A VN D + VMD++IGQ A +QA+AF ++
Sbjct: 177 K--YDVRIVDTAGRHALESDLIQEMKDI-HAVVNADHKLLVMDAAIGQQASEQARAFNEA 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V + VI+TK+DG AKGGGALSAVA TK+ V FIG GE + E F+ F+SRLLGMGD
Sbjct: 234 VGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGD 293
Query: 301 WSGFMDKIHEV-VPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP--GF 357
G ++K EV + D + + K G FTL+ MY+Q + + KMGP+ Q+ MLP G
Sbjct: 294 IKGLIEKAQEVQIESDVDVDAMMK---GKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGI 350
Query: 358 SSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVM 417
EL K + ++ +++ Y +MDSMT+EEL+ +PK++N SRI RIARGSG + V
Sbjct: 351 GIELSDK-EYQVTKERLEAYRFIMDSMTDEELE--DPKIINASRIKRIARGSGTRPELVK 407
Query: 418 EMLEEYKRLAKIWSKMKG 435
E+L+ + + K M+G
Sbjct: 408 ELLKSHAAMQKAIKGMRG 425
>sp|Q46E01|SRP54_METBF Signal recognition particle 54 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1
Length = 443
Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/446 (43%), Positives = 266/446 (59%), Gaps = 25/446 (5%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N R + + ++ EL +++ G + KP +IM VGLQGSGKTT+ K
Sbjct: 61 MKEAPPAGMNPREHVIRIVYQELMEIIGKG----AEIQLKPQIIMMVGLQGSGKTTSTAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK K + FYG D V I G++
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLCEKLNVAFYGEENNPDAVEITRNGLKAL- 175
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
E D+ IVDT+GRH EA L EEM Q++ A PD V+D+ IGQ A QA AF S
Sbjct: 176 -EKYDVKIVDTAGRHALEADLIEEMEQIN-AVAKPDHKFMVLDAGIGQQASQQAHAFNDS 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V + VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 234 VGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGD 293
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP----- 355
M+K E + ++ ++ L +G FTL+ MY+Q + + KMGP+ Q+ SMLP
Sbjct: 294 LKSLMEKAEET--LSEEDVNVEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPLGMGG 351
Query: 356 ----GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGR 411
S E+ + + K+K Y T+MDSMT EE+ ++PKL+ SRI RI+RGSG
Sbjct: 352 MGGVKLSDEMF-----QATSDKMKNYKTIMDSMTEEEM--TDPKLIGGSRIKRISRGSGC 404
Query: 412 QVREVMEMLEEYKRLAKIWSKMKGLK 437
EV E+L+ +K + +G K
Sbjct: 405 SPEEVRELLKYHKTMQTALKGFRGGK 430
>sp|Q8THD0|SRP54_METAC Signal recognition particle 54 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp54 PE=3 SV=1
Length = 440
Score = 329 bits (843), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/443 (42%), Positives = 267/443 (60%), Gaps = 22/443 (4%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
++ AG N R + + ++ EL +++ G + KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEEPPAGMNPREHVIRIVYQELMEIIGKG----AEIQLKPQTIMMVGLQGSGKTTSAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK A K + FYG D V I G++ +
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLAEKLNVGFYGEEGNPDAVEITKNGLKALE 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+ IVDT+GRH EA L EEM ++ A PD V+D+ IGQ A QA AF S
Sbjct: 177 K--YDIRIVDTAGRHALEADLIEEMERI-HAVAKPDHKFMVLDAGIGQQASQQAHAFNDS 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V + VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 234 VGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGD 293
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP----- 355
M+K E + ++ ++ L +G FTL+ MY+Q + + KMGP+ Q+ SMLP
Sbjct: 294 LKSLMEKAEE--SLSEEDVNVEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGG 351
Query: 356 -GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVR 414
FS E+ + + K+K Y +MDSMT EE+ ++P+++ SRI RI++GSG
Sbjct: 352 MKFSDEMF-----QATSDKMKNYKVIMDSMTEEEM--TDPRVIGGSRIKRISKGSGCSSE 404
Query: 415 EVMEMLEEYKRLAKIWSKMKGLK 437
+V E+L+ +K + +G K
Sbjct: 405 DVRELLKYHKTMQTALKGFRGGK 427
>sp|A2BNB5|SRP54_HYPBU Signal recognition particle 54 kDa protein OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3
SV=1
Length = 447
Score = 328 bits (841), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 179/434 (41%), Positives = 277/434 (63%), Gaps = 17/434 (3%)
Query: 10 ISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGH 69
I RA+ ++ + E ++NE + ++ RAL+ ADV +LV + I++ + G
Sbjct: 7 IRRAVSKLLKRSGPYENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGL 66
Query: 70 NKRRIIQQAIFNELCKML----DPG-KPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
++R + + ++EL K+ +P KP +TP VIM VG+QGSGKTTT K A +
Sbjct: 67 SRREWLVKLTYDELVKLFGGEYEPEVKPPYTP-----YVIMMVGVQGSGKTTTVGKLAKF 121
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
++ G++ +V ADT+R GA++QLKQ A +A FYG DPV IA GVE K+
Sbjct: 122 YRGMGYRVGVVAADTYRPGAYEQLKQLADRAGAMFYGEPGSKDPVGIARRGVEELKQRGA 181
Query: 185 DLIIVDTSGRHK--QEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 242
D++IVDT+GRH +E AL +EM++++EA + PD V+ V+D+++GQ ++D A+ F ++
Sbjct: 182 DIVIVDTAGRHGYGEEEALLDEMKRIAEA-IKPDEVVLVIDAAMGQKSYDLAKRFHEATP 240
Query: 243 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWS 302
VG++IVTKMDG AKGGGALSAVAAT + + FIGTGE +DE EVF K FV+RLLGMGD
Sbjct: 241 VGSIIVTKMDGTAKGGGALSAVAATGARIKFIGTGEDIDEIEVFRPKRFVARLLGMGDLE 300
Query: 303 GFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELM 362
++KI + +++ + + ++ G T R +Y+Q Q + K+GP ++ M+PG S+ L
Sbjct: 301 SLLEKIERLRGVEEFEKTVAEMMSGKITFRTIYKQLQQVTKLGPFRKILQMIPGISTMLE 360
Query: 363 PKGR-EKESQAKIKRYMTMMDSMTNEELDSSNPKLMND-SRIMRIARGSGRQVREVMEML 420
+ S+ K+K+++T+M+SMT EELD NP L+ + SR+ RIA G+G + EV E+
Sbjct: 361 SLDEAARLSEEKVKKWLTIMNSMTYEELD--NPNLLEERSRVKRIAVGAGVEPSEVRELY 418
Query: 421 EEYKRLAKIWSKMK 434
YK + K+ ++K
Sbjct: 419 NYYKSVKKMMRQLK 432
>sp|O27376|SRP54_METTH Signal recognition particle 54 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp54 PE=3 SV=1
Length = 442
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 189/441 (42%), Positives = 275/441 (62%), Gaps = 11/441 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L LG S+S+ +++++ TI+DE+V+ E + +I RAL+Q+DV KLV + +I++
Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
++ G + I +++E+ K+L KP I+F+GLQGSGKTTT K
Sbjct: 61 NEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVIDD-KPYRILFLGLQGSGKTTTIGKL 119
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181
A Y +KKG+ +VC DT+R A +QLKQ + YG D + +A +G+ F+K
Sbjct: 120 ARYLRKKGFTVGVVCTDTWRPAALEQLKQYTEGQDVSIYGDPQNRDALDLAEKGLARFQK 179
Query: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241
+ D+II DT+GRHK+E L EM ++S A V P I V+D +IGQ A +QA AF+++
Sbjct: 180 K--DVIIFDTAGRHKEEKDLLREMEELS-AIVEPHEAILVIDGTIGQQAREQALAFRKAT 236
Query: 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 301
+G++IVTK+DG AKGGGALSAVA +P+ FIGTGE +D+ EVFD + F+SRLLGMGD
Sbjct: 237 DIGSIIVTKLDGSAKGGGALSAVAEIGAPIKFIGTGERIDDLEVFDPERFISRLLGMGDL 296
Query: 302 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL 361
++K+ EV + E L + G FTLR M QF+ + KMGP+ QV SMLPG
Sbjct: 297 RSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGK-- 354
Query: 362 MPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLE 421
+PK + ++ I++Y+ +MDSMT EEL+ P ++ SRI RIARGSG + +V E+L+
Sbjct: 355 LPKDASRMTEETIRKYLIIMDSMTEEELE--KPDIIKHSRIRRIARGSGTRNEDVKELLK 412
Query: 422 EYKRLAKIWSKMKGLKIPKKG 442
Y+ K MKGL K G
Sbjct: 413 YYRVTKK---AMKGLGRRKMG 430
>sp|A1RS43|SRP54_PYRIL Signal recognition particle 54 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3
SV=1
Length = 433
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/439 (41%), Positives = 274/439 (62%), Gaps = 13/439 (2%)
Query: 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDL 65
LG S+ ++++ + IDE L E EI RALL+ADV +V+ N K + +
Sbjct: 4 LGEVFSKLVEKIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKP 63
Query: 66 AAGHNKRRIIQQAIFNELCKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYY 124
AG R + +++EL K+L +P+ F P K KP +++ +G++GSGKTTT K A Y
Sbjct: 64 PAGIPPREYVLYILYDELVKLLGGEQPAEFKPVK-KPYLVLLLGVEGSGKTTTAAKLARY 122
Query: 125 HQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184
K+G++ LV DT R AFDQLKQ A K +PFYG D V IA GV+ FK N
Sbjct: 123 LVKRGYRVGLVETDTIRPAAFDQLKQLAEKIGVPFYGERDSKDAVEIARRGVQNFK--NM 180
Query: 185 DLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVG 244
D++I+DT+GRHK E AL +E++ + EA VNPD VI V+D+++G+ A QA+AF + + +
Sbjct: 181 DVVIIDTAGRHKNEEALLQEVKMIYEA-VNPDEVILVIDATVGKLAAAQAEAFMKYLPIH 239
Query: 245 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGF 304
+VI+TKMD A+GGGAL+AV T + V FIG GE +DEF++F+ + FV+R+LGMGD
Sbjct: 240 SVIITKMDSTARGGGALAAVIKTGARVKFIGVGEDVDEFDLFNPRKFVARVLGMGDLDAL 299
Query: 305 MDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPK 364
++KI V ++ ++LQ++ G L +Q + +LK+GP+ +V +LPG + + +
Sbjct: 300 VEKIKAVF---EEEKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLPGGFAAKISE 356
Query: 365 GREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLEEYK 424
+ + SQ +K++ ++ SMT EEL NP ++N SRI RIA G+G ++V EML Y+
Sbjct: 357 EQVELSQKNLKKWYAILSSMTIEEL--KNPDILNASRIRRIALGAGVTPKDVKEMLTVYE 414
Query: 425 RLAKIWSKMK---GLKIPK 440
L K+ +K ++IPK
Sbjct: 415 NLKKMSKTLKRQLRMRIPK 433
>sp|O07853|SRP54_SULAC Signal recognition particle 54 kDa protein OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=srp54 PE=3 SV=2
Length = 444
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/421 (42%), Positives = 270/421 (64%), Gaps = 13/421 (3%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
EK +NE + E+ L++ADV +LV+++ IKK + + + KR +++EL
Sbjct: 19 EKAVNEFIKELQIILIKADVNVRLVKDLTDRIKKRITEEKPPSAIEKREWFISIVYDELS 78
Query: 85 KMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143
++ K P PKK P +IM VG+QGSGKTTT K A +++KKG+K LV AD +R
Sbjct: 79 RLFGGDKEPEVMPKK-LPYIIMLVGVQGSGKTTTSGKLALFYKKKGYKVGLVAADIYRPA 137
Query: 144 AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAAL 201
A++QL Q + IP YG +P+ IA G+E F KE +++I+DT+GRH +EA+L
Sbjct: 138 AYEQLIQIGQQINIPVYGEPGNKNPIEIATNGLEKFLKEKMNIVIIDTAGRHGYGEEASL 197
Query: 202 FEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261
EEM+ + + ++PD VI V+D+SIGQ A+D A F Q+ +G++IV+KMDG AKGGGAL
Sbjct: 198 LEEMKSMYD-KIHPDEVILVIDASIGQKAYDLASRFHQASPIGSLIVSKMDGTAKGGGAL 256
Query: 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321
SAV AT + + FIGTGE +DE EVF+ + FVSRLLG+GD ++KI V + + +
Sbjct: 257 SAVIATGAQIKFIGTGEKLDELEVFNPRRFVSRLLGLGDIESIIEKIKSVEDYENLEKRM 316
Query: 322 QKLSEGN--FTLRIMYEQFQNILKMGPIGQVFSMLPGFSS-ELMPKGREKESQAKIKRYM 378
+ + G TLR +Y+Q + KMGP+G++F MLPG +P+ + K + KI+ +M
Sbjct: 317 EDVISGKTKLTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPEEQLKLGEEKIRTFM 376
Query: 379 TMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLEEYK---RLAKIWSKMKG 435
+M+SMT +ELD NP +++ +R+ RIA+G+G V EV E+L++Y+ L K+ + KG
Sbjct: 377 AIMNSMTYKELD--NPSIIDKARMRRIAKGAGVTVEEVKELLKQYQMTNNLLKMVKRRKG 434
Query: 436 L 436
L
Sbjct: 435 L 435
>sp|A5UMY7|SRP54_METS3 Signal recognition particle 54 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3
SV=2
Length = 445
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 187/456 (41%), Positives = 276/456 (60%), Gaps = 13/456 (2%)
Query: 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVN 61
+L LG ++++ ++++ ++ID+K + E + EI RAL+Q+DV LV ++ IKK
Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRAL 60
Query: 62 LDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKY 121
++ G R + I+ E+ +L P KP I+F+GLQGSGKTTT K
Sbjct: 61 EEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDIDV-KPYKILFLGLQGSGKTTTIGKL 119
Query: 122 AYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181
Y QKKG+ PA+VC DT+R A++QL+Q + ++P YG D + +A +G++ FK
Sbjct: 120 CRYLQKKGFNPAVVCTDTWRPAAYEQLRQLTEEMQVPLYGDPDNKDALDLAQKGLKEFK- 178
Query: 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241
N +II DT+GRHKQE L EM + + + P I V+D +IGQ A +QA+AF Q+
Sbjct: 179 -NRKVIIFDTAGRHKQEEDLIAEMDTLDD-IIQPTESILVIDGTIGQQAGEQAKAFSQAT 236
Query: 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 301
VG++I+TK+DG AKGGGA+SAVA T +P+ FIGTGE +D+FE+FD F+SRLLGMGD
Sbjct: 237 DVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDI 296
Query: 302 SGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL 361
++K + + D + ++ + G FTL M QF+ + MGP+ QV SM+PG +++
Sbjct: 297 QTLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLGNKV 356
Query: 362 MPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLE 421
K K ++ KI Y +M SMT +E++ NPKL+ SRI RIA G+G + EV ++L+
Sbjct: 357 -SKEASKMTEDKIDGYKVIMSSMTKKEME--NPKLIKQSRIRRIAMGAGVEESEVRDLLK 413
Query: 422 EYKRLAKIWSKMKGLKIPKKGEMSALSRN-MNAQHM 456
Y K MKG I K+G S N M Q M
Sbjct: 414 YYNNTKKT---MKG--IGKRGRFGNNSMNRMMGQFM 444
>sp|Q0W2G1|SRP54_UNCMA Signal recognition particle 54 kDa protein OS=Uncultured
methanogenic archaeon RC-I GN=srp54 PE=3 SV=1
Length = 444
Score = 325 bits (832), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 184/430 (42%), Positives = 266/430 (61%), Gaps = 14/430 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MVL LG S+ A+++++N+ ID++V++E + +I RA++QADV KLV ++ + IK
Sbjct: 1 MVLDNLGTSLKDALRKIANSGKIDKEVIDEVVKDIQRAMIQADVNVKLVMKLSSTIKNRA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+ AG N + + + ++ EL ++ GK TP + IM VGLQGSGKTTT K
Sbjct: 61 LTEAPPAGMNSKEHVLRIVYTELVNIV--GKA--TPVALQSQTIMMVGLQGSGKTTTSAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y +KG KPA++CADT+R GA+DQLKQ K + FYG D V I G++
Sbjct: 117 IARYFARKGLKPAVICADTYRPGAYDQLKQLCDKLGVGFYGEAGNKDAVAIVRNGLKEMA 176
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
K D+ IVDT+GRH E L +EM+ + T D + V+D++IGQ A +QA+AF +
Sbjct: 177 K--YDVKIVDTAGRHALETDLIQEMKDIYGLT-KFDHKLLVLDAAIGQQASEQARAFNDA 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
+ + V++TK+DG AKGGGALSAV+ T + + FIG GE D+ E FD F+SRLLGMGD
Sbjct: 234 IGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGD 293
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP--GFS 358
+++ +EV+ D ++K+ +G FTL MY+Q + I KMGP+ Q+ SMLP G
Sbjct: 294 LRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLG 351
Query: 359 SELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVME 418
+ K +Q K+K Y +MDSMT E D +PKL+ SRI R+A GSG+ EV E
Sbjct: 352 GNITDD-MYKMTQDKLKGYKVIMDSMTAAERD--DPKLIGSSRIARVAHGSGKSPEEVRE 408
Query: 419 MLEEYKRLAK 428
+L+ +K + K
Sbjct: 409 LLKYHKMMQK 418
>sp|Q971S9|SRP54_SULTO Signal recognition particle 54 kDa protein OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=srp54 PE=3 SV=2
Length = 445
Score = 325 bits (832), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 182/421 (43%), Positives = 264/421 (62%), Gaps = 13/421 (3%)
Query: 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84
+K +N+ + E+ +L+++DV KLV + IK + + +R +++EL
Sbjct: 19 DKAVNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELS 78
Query: 85 KMLDPG-KPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143
K+ P PKK P VIM VG+QGSGKTTT K A +++KKG+K LV AD +R
Sbjct: 79 KLFGGDINPEVMPKK-IPYVIMLVGVQGSGKTTTAGKLALFYKKKGYKVGLVAADVYRPA 137
Query: 144 AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAAL 201
A+DQL Q + +P YG +D V IA GVE F E D+IIVDT+GRH +E L
Sbjct: 138 AYDQLVQIGKQINVPVYGEPNNTDAVGIAKRGVEKFLSEKYDIIIVDTAGRHGYGEEVKL 197
Query: 202 FEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261
EEM+ + + + PD VI V+D+SIGQ A+D A F Q+ +G++IVTKMDG AKGGGAL
Sbjct: 198 LEEMKNMY-SEIKPDEVILVIDASIGQKAYDLASRFHQASPIGSIIVTKMDGTAKGGGAL 256
Query: 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321
SAVAAT + + FIGTGE +DE EVF+ + FVSR+LGMGD ++KI + +Q + +
Sbjct: 257 SAVAATGAAIKFIGTGEKLDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKM 316
Query: 322 QKLSEG--NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSS-ELMPKGREKESQAKIKRYM 378
+++ G TLR +Y+Q + KMGP+ ++ MLPGF +P+ + K + KIK+++
Sbjct: 317 EEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFL 376
Query: 379 TMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLEEYK---RLAKIWSKMKG 435
+M+SMT +ELD NP +++ SRI RIA+GSG EV E+L++Y+ L K+ + KG
Sbjct: 377 VIMNSMTYKELD--NPSIIDKSRIRRIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKG 434
Query: 436 L 436
L
Sbjct: 435 L 435
>sp|A2STI3|SRP54_METLZ Signal recognition particle 54 kDa protein OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54
PE=3 SV=1
Length = 446
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 182/436 (41%), Positives = 267/436 (61%), Gaps = 14/436 (3%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
M L L S+ A+++++ T+ID ++E + ++ RALL +DV KLV E+ IK
Sbjct: 1 MGLDTLSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARS 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCT 119
+DL G N R + + ++ EL ++ GK + F+ K P I+ GLQGSGKTTT
Sbjct: 61 LDEDLPKGINAREHVLRIVYQELVNLV--GKEAEFSLK---PQKILMAGLQGSGKTTTTG 115
Query: 120 KYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179
K Y Q+KG K + AD FR GA+ QL+ K +P YG E D V+I +G+
Sbjct: 116 KLCRYFQRKGLKVGAIGADNFRPGAYAQLETLCKKINVPSYGDPKEKDAVKIVKDGLAAL 175
Query: 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ 239
K + D+IIVDT+GRH E L +E+ QV+ A +NPD V+D+++GQAA DQA+ F +
Sbjct: 176 K--DVDVIIVDTAGRHALEDDLIDEITQVN-AYLNPDHRWLVIDAALGQAARDQAKRFHE 232
Query: 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299
++ + VIVTKMDG AKGGGA+SAVA T+S ++FIG GE +D+ E FD F+SRLLGMG
Sbjct: 233 AIGIDGVIVTKMDGTAKGGGAMSAVAETQSGIVFIGNGETIDDLERFDPNGFISRLLGMG 292
Query: 300 DWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSS 359
D ++K E M+ + + + G FTL MY+Q + + KMGP+ QV SMLP +
Sbjct: 293 DLKALVEKAEE--SMNAEDVDVNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLP-MGN 349
Query: 360 ELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEM 419
+P + + K+K++ +MDSMT +ELD P L+N SR++R+A+GSG V EV ++
Sbjct: 350 MNVPSDALEGTADKMKKFRIIMDSMTPQELDE--PALINTSRMIRVAKGSGSSVEEVRDL 407
Query: 420 LEEYKRLAKIWSKMKG 435
++ YK + K +G
Sbjct: 408 IKYYKMMQKTLKGFRG 423
>sp|Q8PXF3|SRP54_METMA Signal recognition particle 54 kDa protein OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=srp54 PE=3 SV=1
Length = 443
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 190/446 (42%), Positives = 266/446 (59%), Gaps = 25/446 (5%)
Query: 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIV 60
MV+ +LG S+ A++++ A IDE+ +NE + +I RALLQADV KLV M IK+
Sbjct: 1 MVMEKLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERA 60
Query: 61 NLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTK 120
+D AG N R + + ++ EL +++ G + KP IM VGLQGSGKTT+ K
Sbjct: 61 MKEDPPAGMNPREHVIRIVYQELMEIIGKG----ADIQLKPQTIMMVGLQGSGKTTSAAK 116
Query: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180
A Y Q+KG K +V ADTFR GA+ QLK + K + FYG D V I + G++
Sbjct: 117 LARYFQRKGLKAGVVAADTFRPGAYHQLKTLSEKLNVGFYGEEGNPDAVEITIHGLKAL- 175
Query: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240
E D+ IVDT+GRH EA L EEM ++ A PD V+D+ IGQ A QA AF S
Sbjct: 176 -EKYDIKIVDTAGRHALEADLIEEMERI-HAVAKPDHKFMVLDAGIGQQASQQAHAFNDS 233
Query: 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300
V + VI+TK+DG AKGGGALSAV+ TK+P+ FIG GE ++FE F+ F+SRLLGMGD
Sbjct: 234 VGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGD 293
Query: 301 WSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPG---- 356
M+K E + ++ ++ L +G FTL+ MY+Q + + KMGP+ Q+ SMLP
Sbjct: 294 LKSLMEKAEE--SLSEEDVNVEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGG 351
Query: 357 -----FSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGR 411
S E+ + + K+K Y +MDSMT +E+ ++PKL+ SRI RI+RGSG
Sbjct: 352 LGGVKLSDEMF-----QATSDKMKNYKVIMDSMTEDEM--ADPKLIGGSRIKRISRGSGC 404
Query: 412 QVREVMEMLEEYKRLAKIWSKMKGLK 437
+V E+L+ +K + +G K
Sbjct: 405 SPEDVRELLKYHKTMQTALKGFRGGK 430
>sp|C3NDW4|SRP54_SULIY Signal recognition particle 54 kDa protein OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=srp54 PE=3 SV=1
Length = 447
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 272/434 (62%), Gaps = 13/434 (2%)
Query: 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAG 68
+I A+++ + EK ++E + E+ ++L+ +DV KLV + IK+ +N + +
Sbjct: 4 NIRDAVRKFLTGSTPYEKAVDEFIKELQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSV 63
Query: 69 HNKRRIIQQAIFNELCKMLDPGK-PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127
++ +++EL K+ K P+ P K P +IM VG+QGSGKTTT K AY++++
Sbjct: 64 LERKEWFISIVYDELSKLFGGDKEPNVNPTK-LPFIIMLVGVQGSGKTTTAGKLAYFYKR 122
Query: 128 KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187
+G+K LV AD +R A+DQL Q + +P YG + + IA +GV+TF K D+I
Sbjct: 123 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVPVYGEPNNQNAIEIAKKGVDTFVKNKMDII 182
Query: 188 IVDTSGRH--KQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGA 245
IVDT+GRH +E L EEM+++ EA + PD VI V+D+SIGQ A+D A F Q+ +G+
Sbjct: 183 IVDTAGRHGYGEETKLLEEMKEIYEA-LKPDDVILVIDASIGQKAYDLASRFHQASPIGS 241
Query: 246 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFM 305
+I+TKMDG AKGGGALSAVAAT + + FIGTGE +DE E+F+ K +VSR+LGMGD +
Sbjct: 242 IIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEIFNAKRYVSRILGMGDIESIL 301
Query: 306 DKIHEVVPMDQQPELLQKLSE--GNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMP 363
+K+ + ++ + ++ + E G TLR +Y Q + KMGP+ +V +PG ++P
Sbjct: 302 EKVKGLEEYEKIQKKMEDVMEGKGKLTLRDVYAQIMALRKMGPLSKVLQHIPGLGV-MLP 360
Query: 364 KGRE---KESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEML 420
E K + KI+R++ ++SMT +EL+ NP +++ SR+ RIA GSG +V +V E+L
Sbjct: 361 TPSEDQLKLGEEKIRRWLAALNSMTYKELE--NPSIIDKSRMRRIAEGSGLEVEDVRELL 418
Query: 421 EEYKRLAKIWSKMK 434
E Y + K+ +K
Sbjct: 419 EWYNNMNKLLKMVK 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,325,084
Number of Sequences: 539616
Number of extensions: 7151139
Number of successful extensions: 26234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 25481
Number of HSP's gapped (non-prelim): 312
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)