Query 011010
Match_columns 495
No_of_seqs 526 out of 3916
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 3E-115 6E-120 889.3 44.5 430 2-435 1-430 (451)
2 KOG0780 Signal recognition par 100.0 7E-111 2E-115 837.8 43.1 483 1-495 1-483 (483)
3 TIGR01425 SRP54_euk signal rec 100.0 4.2E-97 9E-102 772.8 42.8 427 2-429 1-429 (429)
4 PRK10867 signal recognition pa 100.0 1.5E-93 3.3E-98 750.2 44.2 426 2-435 1-427 (433)
5 PRK00771 signal recognition pa 100.0 1.6E-91 3.4E-96 736.5 43.9 423 6-435 1-423 (437)
6 TIGR00959 ffh signal recogniti 100.0 4.4E-91 9.6E-96 731.4 43.6 426 3-432 1-428 (428)
7 COG0552 FtsY Signal recognitio 100.0 6.3E-49 1.4E-53 391.8 29.3 272 22-297 59-340 (340)
8 PRK14974 cell division protein 100.0 4.8E-45 1E-49 372.8 31.9 295 2-298 1-336 (336)
9 PRK10416 signal recognition pa 100.0 4.6E-43 9.9E-48 357.0 32.9 287 4-298 25-316 (318)
10 TIGR00064 ftsY signal recognit 100.0 2.1E-42 4.6E-47 345.4 28.9 264 28-296 3-272 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 6.2E-41 1.3E-45 319.7 20.3 196 101-297 1-196 (196)
12 KOG0781 Signal recognition par 100.0 7.9E-38 1.7E-42 320.3 21.3 284 11-295 281-585 (587)
13 PRK11889 flhF flagellar biosyn 100.0 1.5E-34 3.2E-39 296.6 27.0 258 27-298 175-435 (436)
14 PRK12723 flagellar biosynthesi 100.0 4.5E-34 9.7E-39 297.1 31.0 260 30-303 109-374 (388)
15 PRK12726 flagellar biosynthesi 100.0 4.9E-34 1.1E-38 292.0 27.5 254 33-299 145-401 (407)
16 PRK14723 flhF flagellar biosyn 100.0 5E-34 1.1E-38 314.5 28.3 251 30-299 125-382 (767)
17 PRK12724 flagellar biosynthesi 100.0 1.3E-33 2.8E-38 293.1 29.3 266 20-296 145-415 (432)
18 COG1159 Era GTPase [General fu 100.0 4.8E-34 1E-38 281.1 11.9 253 99-422 4-269 (298)
19 PRK06995 flhF flagellar biosyn 100.0 4.8E-32 1E-36 287.6 28.0 274 4-299 173-450 (484)
20 PRK05703 flhF flagellar biosyn 100.0 7.2E-32 1.6E-36 284.8 28.2 257 25-299 156-416 (424)
21 PRK06731 flhF flagellar biosyn 100.0 1.3E-31 2.9E-36 266.4 23.1 259 25-298 8-269 (270)
22 COG1419 FlhF Flagellar GTP-bin 100.0 3.5E-31 7.6E-36 271.6 23.7 191 101-299 203-397 (407)
23 PRK14721 flhF flagellar biosyn 100.0 5.3E-30 1.1E-34 268.4 27.3 248 32-299 134-385 (420)
24 PRK14722 flhF flagellar biosyn 100.0 7.2E-30 1.6E-34 263.7 27.5 251 33-298 77-339 (374)
25 PF02978 SRP_SPB: Signal pepti 100.0 8.2E-32 1.8E-36 230.4 9.3 100 328-430 1-104 (104)
26 PRK12727 flagellar biosynthesi 100.0 9.4E-27 2E-31 247.2 27.2 245 31-297 293-541 (559)
27 TIGR00436 era GTP-binding prot 99.9 3.7E-27 7.9E-32 235.7 11.7 248 103-422 2-261 (270)
28 cd03115 SRP The signal recogni 99.9 2E-25 4.3E-30 208.2 20.7 172 103-275 2-173 (173)
29 PRK00089 era GTPase Era; Revie 99.9 2.1E-26 4.6E-31 232.3 12.6 250 100-421 4-265 (292)
30 PRK15494 era GTPase Era; Provi 99.9 7.9E-26 1.7E-30 233.1 12.0 249 100-421 51-312 (339)
31 COG0486 ThdF Predicted GTPase 99.9 1.2E-22 2.6E-27 211.0 14.2 234 8-313 140-376 (454)
32 TIGR03499 FlhF flagellar biosy 99.8 1.5E-18 3.2E-23 174.8 19.1 149 28-193 132-282 (282)
33 KOG1423 Ras-like GTPase ERA [C 99.8 8.6E-20 1.9E-24 179.6 8.0 264 99-422 70-368 (379)
34 COG1160 Predicted GTPases [Gen 99.7 1.8E-17 3.8E-22 172.2 15.5 157 102-312 4-164 (444)
35 PRK05291 trmE tRNA modificatio 99.7 1.5E-17 3.3E-22 177.7 13.1 231 7-313 137-370 (449)
36 PRK09435 membrane ATPase/prote 99.7 9.5E-17 2.1E-21 164.3 17.0 224 99-340 54-294 (332)
37 KOG1191 Mitochondrial GTPase [ 99.7 1.1E-16 2.4E-21 166.5 13.4 244 8-312 190-449 (531)
38 TIGR03156 GTP_HflX GTP-binding 99.7 9.9E-16 2.1E-20 158.8 15.8 230 8-311 112-350 (351)
39 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.8E-15 3.8E-20 161.3 14.9 194 7-255 129-324 (442)
40 COG1160 Predicted GTPases [Gen 99.6 1.6E-15 3.4E-20 157.8 13.4 189 76-313 153-351 (444)
41 TIGR00750 lao LAO/AO transport 99.6 8.7E-15 1.9E-19 148.7 18.1 195 99-312 32-237 (300)
42 COG1703 ArgK Putative periplas 99.6 8.3E-15 1.8E-19 145.0 17.3 197 97-312 47-253 (323)
43 PF03308 ArgK: ArgK protein; 99.6 2.2E-15 4.7E-20 147.3 8.8 193 99-312 27-229 (266)
44 PF02421 FeoB_N: Ferrous iron 99.6 2.4E-15 5.1E-20 138.2 7.0 150 103-308 2-156 (156)
45 cd04163 Era Era subfamily. Er 99.6 4E-14 8.7E-19 127.8 14.4 162 101-311 3-167 (168)
46 PRK12298 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.4E-19 152.8 12.2 180 103-335 161-362 (390)
47 PRK13768 GTPase; Provisional 99.5 1.4E-13 3E-18 136.7 15.8 207 102-314 3-248 (253)
48 COG0378 HypB Ni2+-binding GTPa 99.5 6E-14 1.3E-18 131.4 11.4 180 102-311 14-199 (202)
49 TIGR03594 GTPase_EngA ribosome 99.5 3.9E-13 8.5E-18 142.8 15.8 159 103-315 1-162 (429)
50 TIGR00073 hypB hydrogenase acc 99.5 1.4E-12 2.9E-17 125.5 15.2 182 100-312 21-206 (207)
51 PRK11058 GTPase HflX; Provisio 99.4 1.1E-12 2.4E-17 139.3 15.3 184 76-313 171-362 (426)
52 cd03114 ArgK-like The function 99.4 1.5E-12 3.3E-17 118.9 13.5 136 103-252 1-148 (148)
53 cd01894 EngA1 EngA1 subfamily. 99.4 2.1E-12 4.5E-17 116.3 13.8 153 105-311 1-156 (157)
54 cd04164 trmE TrmE (MnmE, ThdF, 99.4 3.3E-12 7.1E-17 114.9 14.3 153 103-312 3-156 (157)
55 PRK03003 GTP-binding protein D 99.4 2E-12 4.4E-17 139.3 15.2 159 102-314 39-200 (472)
56 PRK00093 GTP-binding protein D 99.4 6.4E-12 1.4E-16 133.9 16.0 156 103-312 3-161 (435)
57 cd01898 Obg Obg subfamily. Th 99.4 2.8E-12 6E-17 117.7 11.3 157 104-311 3-169 (170)
58 PRK09518 bifunctional cytidyla 99.4 5.7E-12 1.2E-16 142.2 16.1 159 102-314 276-437 (712)
59 COG3640 CooC CO dehydrogenase 99.4 1.7E-11 3.7E-16 117.9 16.0 174 103-299 2-232 (255)
60 cd01878 HflX HflX subfamily. 99.4 9.5E-12 2.1E-16 118.6 13.8 155 102-311 42-203 (204)
61 PRK03003 GTP-binding protein D 99.4 1.2E-11 2.6E-16 133.3 16.0 166 100-313 210-382 (472)
62 cd01895 EngA2 EngA2 subfamily. 99.4 1.8E-11 3.9E-16 111.6 14.6 165 101-311 2-173 (174)
63 cd02037 MRP-like MRP (Multiple 99.3 1.9E-11 4.2E-16 113.6 14.6 128 104-253 2-133 (169)
64 PRK10463 hydrogenase nickel in 99.3 1.9E-11 4E-16 122.8 14.9 179 101-311 104-287 (290)
65 PHA02518 ParA-like protein; Pr 99.3 2.3E-11 5.1E-16 116.2 14.7 135 103-254 2-146 (211)
66 TIGR03594 GTPase_EngA ribosome 99.3 3.5E-11 7.6E-16 127.9 17.2 189 77-312 149-343 (429)
67 cd00881 GTP_translation_factor 99.3 2.1E-11 4.6E-16 113.3 13.5 181 104-313 2-187 (189)
68 COG1084 Predicted GTPase [Gene 99.3 4E-11 8.6E-16 120.3 15.8 119 102-256 169-295 (346)
69 PRK09518 bifunctional cytidyla 99.3 2.5E-11 5.3E-16 137.1 15.9 189 76-313 424-621 (712)
70 PRK09866 hypothetical protein; 99.3 6.6E-11 1.4E-15 128.3 17.9 114 183-312 229-352 (741)
71 smart00053 DYNc Dynamin, GTPas 99.3 2.1E-11 4.5E-16 119.9 12.4 153 103-265 28-216 (240)
72 PRK13849 putative crown gall t 99.3 5.8E-11 1.3E-15 116.4 15.5 141 102-253 2-152 (231)
73 PF01926 MMR_HSR1: 50S ribosom 99.3 2.5E-11 5.5E-16 105.4 11.5 112 103-250 1-116 (116)
74 KOG1532 GTPase XAB1, interacts 99.3 1.1E-11 2.4E-16 121.0 10.1 244 99-350 17-305 (366)
75 PRK00093 GTP-binding protein D 99.3 6.2E-11 1.3E-15 126.3 16.9 165 101-312 173-343 (435)
76 PF00009 GTP_EFTU: Elongation 99.3 8E-12 1.7E-16 118.1 9.0 173 102-313 4-187 (188)
77 PRK12299 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.6E-16 127.5 10.8 160 103-313 160-328 (335)
78 cd02117 NifH_like This family 99.3 2.1E-11 4.5E-16 117.7 11.7 144 103-254 2-188 (212)
79 cd00880 Era_like Era (E. coli 99.3 3.5E-11 7.6E-16 106.9 12.1 160 106-311 1-162 (163)
80 TIGR00101 ureG urease accessor 99.3 5.4E-11 1.2E-15 114.0 14.2 184 101-312 1-195 (199)
81 PRK15467 ethanolamine utilizat 99.3 3E-11 6.4E-16 111.3 10.8 145 103-314 3-148 (158)
82 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 5.7E-11 1.2E-15 108.6 12.4 161 103-312 2-165 (168)
83 PF03029 ATP_bind_1: Conserved 99.3 2.6E-11 5.6E-16 119.4 10.7 145 106-255 1-170 (238)
84 TIGR01007 eps_fam capsular exo 99.3 2.1E-10 4.5E-15 109.8 16.7 145 101-254 17-193 (204)
85 PF10662 PduV-EutP: Ethanolami 99.3 2.4E-11 5.2E-16 109.8 9.4 137 102-310 2-143 (143)
86 PRK12296 obgE GTPase CgtA; Rev 99.3 2E-11 4.3E-16 131.1 10.5 158 103-313 161-340 (500)
87 cd03110 Fer4_NifH_child This p 99.3 1.6E-10 3.4E-15 108.2 15.2 153 104-271 3-174 (179)
88 PRK04213 GTP-binding protein; 99.2 1.2E-10 2.6E-15 110.7 13.6 162 102-315 10-194 (201)
89 TIGR03598 GTPase_YsxC ribosome 99.2 6.7E-11 1.4E-15 110.7 11.6 117 101-255 18-143 (179)
90 PRK09554 feoB ferrous iron tra 99.2 1.2E-10 2.5E-15 131.9 15.2 146 102-283 4-159 (772)
91 COG2262 HflX GTPases [General 99.2 1.1E-10 2.4E-15 120.3 13.7 157 102-313 193-356 (411)
92 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 5.6E-11 1.2E-15 113.1 10.5 120 103-256 2-131 (196)
93 cd04171 SelB SelB subfamily. 99.2 1.2E-10 2.7E-15 105.6 12.2 156 103-310 2-163 (164)
94 PRK12297 obgE GTPase CgtA; Rev 99.2 6.7E-11 1.4E-15 125.3 11.7 156 103-313 160-327 (424)
95 TIGR01969 minD_arch cell divis 99.2 2.4E-10 5.2E-15 112.2 14.4 142 103-254 2-173 (251)
96 cd01881 Obg_like The Obg-like 99.2 5E-11 1.1E-15 109.7 9.0 154 106-311 1-175 (176)
97 COG0218 Predicted GTPase [Gene 99.2 2.4E-10 5.2E-15 108.0 13.5 159 103-313 26-197 (200)
98 TIGR02729 Obg_CgtA Obg family 99.2 8.8E-11 1.9E-15 120.9 11.1 157 103-312 159-328 (329)
99 cd01890 LepA LepA subfamily. 99.2 2.7E-10 6E-15 105.6 13.4 107 183-313 66-177 (179)
100 cd01884 EF_Tu EF-Tu subfamily. 99.2 3E-10 6.5E-15 108.5 13.6 124 103-255 4-132 (195)
101 PF01656 CbiA: CobQ/CobB/MinD/ 99.2 1.3E-10 2.7E-15 109.4 10.8 141 105-254 3-161 (195)
102 CHL00175 minD septum-site dete 99.2 4E-10 8.6E-15 113.2 15.0 145 101-254 15-191 (281)
103 cd02036 MinD Bacterial cell di 99.2 4.5E-10 9.8E-15 104.3 13.8 124 104-256 2-129 (179)
104 cd04166 CysN_ATPS CysN_ATPS su 99.2 1.8E-10 3.8E-15 110.9 11.0 67 182-255 75-144 (208)
105 cd01879 FeoB Ferrous iron tran 99.2 2.4E-10 5.2E-15 103.3 11.2 113 183-312 42-156 (158)
106 cd02032 Bchl_like This family 99.2 5.9E-10 1.3E-14 111.2 14.9 143 103-253 2-184 (267)
107 TIGR03018 pepcterm_TyrKin exop 99.2 1.3E-09 2.7E-14 104.9 16.6 140 100-249 34-207 (207)
108 CHL00072 chlL photochlorophyll 99.2 5.8E-10 1.3E-14 113.0 14.9 142 104-253 3-184 (290)
109 PRK00454 engB GTP-binding prot 99.2 5.8E-10 1.3E-14 105.1 13.8 159 101-313 24-194 (196)
110 TIGR03371 cellulose_yhjQ cellu 99.1 8E-10 1.7E-14 108.3 15.2 145 102-255 2-182 (246)
111 cd01897 NOG NOG1 is a nucleola 99.1 2.8E-10 6.1E-15 104.3 10.7 156 103-312 2-167 (168)
112 TIGR02528 EutP ethanolamine ut 99.1 2.2E-10 4.8E-15 102.4 9.3 138 103-309 2-141 (142)
113 PRK13185 chlL protochlorophyll 99.1 9.5E-10 2.1E-14 109.8 14.6 144 102-253 3-186 (270)
114 PF07015 VirC1: VirC1 protein; 99.1 7E-10 1.5E-14 107.5 13.0 137 103-253 3-152 (231)
115 cd02040 NifH NifH gene encodes 99.1 9.3E-10 2E-14 109.5 14.4 41 102-142 2-42 (270)
116 cd01891 TypA_BipA TypA (tyrosi 99.1 8.1E-10 1.8E-14 104.7 13.2 65 183-255 64-131 (194)
117 cd01886 EF-G Elongation factor 99.1 6.4E-10 1.4E-14 111.5 13.0 216 104-346 2-241 (270)
118 TIGR03029 EpsG chain length de 99.1 3.7E-09 8E-14 105.8 18.6 142 100-250 102-274 (274)
119 smart00178 SAR Sar1p-like memb 99.1 9.1E-10 2E-14 103.6 13.1 159 102-311 18-183 (184)
120 cd02035 ArsA ArsA ATPase funct 99.1 9.9E-10 2.1E-14 106.5 13.6 146 103-254 1-183 (217)
121 cd03112 CobW_like The function 99.1 7.2E-10 1.6E-14 102.3 12.0 145 103-253 2-158 (158)
122 PRK11670 antiporter inner memb 99.1 1.7E-09 3.6E-14 113.1 15.9 148 100-254 106-282 (369)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.1 6.1E-10 1.3E-14 102.0 11.2 109 183-310 49-166 (167)
124 cd01889 SelB_euk SelB subfamil 99.1 6.2E-10 1.3E-14 105.3 11.2 115 182-314 66-187 (192)
125 TIGR01281 DPOR_bchL light-inde 99.1 1.2E-09 2.6E-14 109.0 13.4 39 103-141 2-40 (268)
126 cd04156 ARLTS1 ARLTS1 subfamil 99.1 1.3E-09 2.8E-14 99.0 12.5 151 104-310 2-159 (160)
127 TIGR00231 small_GTP small GTP- 99.1 4.2E-10 9.2E-15 99.9 8.7 156 103-309 3-160 (161)
128 cd04168 TetM_like Tet(M)-like 99.1 3.8E-09 8.2E-14 104.0 15.9 142 182-346 62-208 (237)
129 cd04154 Arl2 Arl2 subfamily. 99.1 9.1E-10 2E-14 102.1 10.8 149 102-309 15-171 (173)
130 cd01896 DRG The developmentall 99.1 1.1E-09 2.3E-14 107.6 11.8 89 103-227 2-90 (233)
131 cd04170 EF-G_bact Elongation f 99.1 6.3E-09 1.4E-13 104.0 17.4 157 182-346 62-239 (268)
132 cd04165 GTPBP1_like GTPBP1-lik 99.1 7.8E-10 1.7E-14 107.9 10.5 196 104-311 2-221 (224)
133 PRK11519 tyrosine kinase; Prov 99.1 3.8E-09 8.1E-14 119.6 17.5 147 99-254 524-701 (719)
134 cd04157 Arl6 Arl6 subfamily. 99.1 2.5E-09 5.3E-14 97.1 13.1 148 104-310 2-161 (162)
135 cd01876 YihA_EngB The YihA (En 99.1 2.3E-09 4.9E-14 97.0 12.6 160 104-312 2-170 (170)
136 cd04155 Arl3 Arl3 subfamily. 99.0 1.3E-09 2.9E-14 100.4 11.2 151 101-310 14-172 (173)
137 cd01864 Rab19 Rab19 subfamily. 99.0 1.3E-09 2.8E-14 99.9 10.7 107 184-311 52-164 (165)
138 COG0489 Mrp ATPases involved i 99.0 6E-09 1.3E-13 104.2 15.8 147 101-255 57-233 (265)
139 cd00550 ArsA_ATPase Oxyanion-t 99.0 5.3E-09 1.1E-13 104.0 15.2 38 103-140 2-39 (254)
140 COG0370 FeoB Fe2+ transport sy 99.0 7.5E-10 1.6E-14 120.6 9.7 155 102-313 4-164 (653)
141 cd01888 eIF2_gamma eIF2-gamma 99.0 2.7E-09 5.8E-14 102.3 12.6 111 184-314 83-200 (203)
142 cd04159 Arl10_like Arl10-like 99.0 3.1E-09 6.7E-14 95.1 12.3 149 104-310 2-158 (159)
143 PRK13235 nifH nitrogenase redu 99.0 2.9E-09 6.3E-14 106.7 13.3 40 102-141 2-41 (274)
144 cd02033 BchX Chlorophyllide re 99.0 7.1E-09 1.5E-13 106.5 15.8 45 99-143 29-73 (329)
145 cd04104 p47_IIGP_like p47 (47- 99.0 1.7E-09 3.6E-14 103.3 10.5 117 184-315 52-186 (197)
146 cd00154 Rab Rab family. Rab G 99.0 2.3E-09 5.1E-14 95.8 10.8 150 103-309 2-158 (159)
147 PRK09841 cryptic autophosphory 99.0 1.2E-08 2.6E-13 115.6 19.1 147 100-255 530-707 (726)
148 smart00173 RAS Ras subfamily o 99.0 2.6E-09 5.7E-14 97.5 11.3 152 103-312 2-161 (164)
149 cd00879 Sar1 Sar1 subfamily. 99.0 3.9E-09 8.4E-14 99.1 12.8 163 101-311 19-189 (190)
150 PRK13232 nifH nitrogenase redu 99.0 2.6E-09 5.6E-14 107.0 12.1 41 102-142 2-42 (273)
151 PRK10818 cell division inhibit 99.0 7.6E-09 1.6E-13 103.2 15.3 145 102-255 3-187 (270)
152 cd04158 ARD1 ARD1 subfamily. 99.0 4.2E-09 9.2E-14 97.4 12.6 153 104-315 2-163 (169)
153 cd04142 RRP22 RRP22 subfamily. 99.0 2.9E-09 6.3E-14 101.8 11.8 162 103-312 2-173 (198)
154 cd04145 M_R_Ras_like M-Ras/R-R 99.0 3.9E-09 8.6E-14 96.0 12.1 154 102-312 3-163 (164)
155 COG1163 DRG Predicted GTPase [ 99.0 2.2E-09 4.7E-14 107.7 11.1 105 92-232 54-158 (365)
156 cd01853 Toc34_like Toc34-like 99.0 3.3E-09 7.2E-14 105.1 12.4 121 101-257 31-165 (249)
157 cd01862 Rab7 Rab7 subfamily. 99.0 1.8E-09 3.8E-14 99.1 9.8 108 184-312 49-166 (172)
158 smart00175 RAB Rab subfamily o 99.0 1.8E-09 4E-14 98.0 9.7 154 103-312 2-161 (164)
159 cd01861 Rab6 Rab6 subfamily. 99.0 2.3E-09 4.9E-14 97.4 10.3 153 103-311 2-160 (161)
160 TIGR01968 minD_bact septum sit 99.0 6.9E-09 1.5E-13 102.3 14.6 143 102-254 2-176 (261)
161 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 5E-09 1.1E-13 97.5 12.7 151 102-310 16-173 (174)
162 cd00878 Arf_Arl Arf (ADP-ribos 99.0 4.1E-09 8.9E-14 95.7 11.7 149 104-310 2-157 (158)
163 PLN03127 Elongation factor Tu; 99.0 5.2E-09 1.1E-13 112.1 14.2 126 101-255 61-191 (447)
164 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 2.5E-09 5.3E-14 98.1 10.2 154 103-312 4-163 (166)
165 PF02492 cobW: CobW/HypB/UreG, 99.0 3E-09 6.4E-14 100.0 11.0 148 103-256 2-156 (178)
166 PRK00049 elongation factor Tu; 99.0 4.3E-09 9.2E-14 111.2 13.3 126 101-255 12-142 (396)
167 cd02038 FleN-like FleN is a me 99.0 3.8E-09 8.2E-14 95.3 11.1 103 106-255 5-111 (139)
168 TIGR01005 eps_transp_fam exopo 99.0 7.4E-09 1.6E-13 117.9 16.0 148 99-255 544-722 (754)
169 TIGR02016 BchX chlorophyllide 99.0 7.4E-09 1.6E-13 105.2 14.2 40 102-141 1-40 (296)
170 PRK13230 nitrogenase reductase 99.0 5.3E-09 1.1E-13 105.1 13.1 40 102-141 2-41 (279)
171 cd04119 RJL RJL (RabJ-Like) su 99.0 2.6E-09 5.7E-14 97.1 9.8 154 103-312 2-166 (168)
172 PF06564 YhjQ: YhjQ protein; 99.0 1E-08 2.2E-13 100.8 14.4 144 102-257 2-179 (243)
173 cd02042 ParA ParA and ParB of 99.0 4.6E-09 1E-13 89.4 10.6 72 103-226 1-73 (104)
174 TIGR03815 CpaE_hom_Actino heli 99.0 3.2E-08 7E-13 101.5 18.8 141 101-251 93-265 (322)
175 PRK12735 elongation factor Tu; 99.0 6E-09 1.3E-13 110.1 13.7 126 101-255 12-142 (396)
176 cd04149 Arf6 Arf6 subfamily. 99.0 8E-09 1.7E-13 95.8 13.0 150 102-310 10-167 (168)
177 cd01860 Rab5_related Rab5-rela 99.0 3.4E-09 7.4E-14 96.4 10.3 151 103-312 3-162 (163)
178 PRK13234 nifH nitrogenase redu 99.0 5E-09 1.1E-13 106.4 12.4 42 101-142 4-45 (295)
179 PRK12736 elongation factor Tu; 99.0 6.7E-09 1.5E-13 109.6 13.7 173 101-313 12-201 (394)
180 cd00876 Ras Ras family. The R 99.0 5.2E-09 1.1E-13 94.4 11.1 151 104-311 2-159 (160)
181 smart00177 ARF ARF-like small 99.0 7.7E-09 1.7E-13 96.5 12.5 152 102-312 14-173 (175)
182 cd04151 Arl1 Arl1 subfamily. 99.0 4.9E-09 1.1E-13 95.5 11.0 149 104-310 2-157 (158)
183 cd03111 CpaE_like This protein 99.0 6.7E-09 1.4E-13 89.5 11.2 73 104-226 2-76 (106)
184 cd01863 Rab18 Rab18 subfamily. 99.0 6.4E-09 1.4E-13 94.6 11.7 152 103-311 2-160 (161)
185 cd04161 Arl2l1_Arl13_like Arl2 99.0 6.3E-09 1.4E-13 96.3 11.6 148 104-310 2-166 (167)
186 cd04169 RF3 RF3 subfamily. Pe 98.9 9.9E-09 2.1E-13 102.8 13.6 215 102-345 3-237 (267)
187 cd04137 RheB Rheb (Ras Homolog 98.9 3.2E-09 7E-14 98.7 9.5 153 102-312 2-162 (180)
188 cd04139 RalA_RalB RalA/RalB su 98.9 5.6E-09 1.2E-13 94.7 10.8 108 183-312 47-161 (164)
189 cd04113 Rab4 Rab4 subfamily. 98.9 4.5E-09 9.7E-14 95.7 10.2 107 183-311 48-160 (161)
190 CHL00071 tufA elongation facto 98.9 6.4E-09 1.4E-13 110.3 12.6 128 101-255 12-142 (409)
191 PRK13869 plasmid-partitioning 98.9 1.6E-08 3.5E-13 107.1 15.6 41 101-141 121-162 (405)
192 cd01868 Rab11_like Rab11-like. 98.9 4.5E-09 9.6E-14 96.1 9.9 152 103-312 5-164 (165)
193 cd01866 Rab2 Rab2 subfamily. 98.9 5E-09 1.1E-13 96.6 10.3 155 102-312 5-165 (168)
194 cd01865 Rab3 Rab3 subfamily. 98.9 4.3E-09 9.4E-14 96.7 9.8 153 103-312 3-162 (165)
195 TIGR01287 nifH nitrogenase iro 98.9 1.1E-08 2.4E-13 102.5 13.4 39 103-141 2-40 (275)
196 TIGR00491 aIF-2 translation in 98.9 8.7E-09 1.9E-13 113.5 13.5 184 100-310 3-213 (590)
197 PRK12317 elongation factor 1-a 98.9 3.6E-09 7.9E-14 112.7 10.3 67 182-255 82-153 (425)
198 PRK13233 nifH nitrogenase redu 98.9 2.1E-08 4.5E-13 100.5 15.2 41 102-142 3-44 (275)
199 cd04138 H_N_K_Ras_like H-Ras/N 98.9 9.3E-09 2E-13 92.9 11.4 151 103-311 3-160 (162)
200 PRK10037 cell division protein 98.9 7.2E-09 1.6E-13 102.5 11.6 138 103-253 3-175 (250)
201 cd04136 Rap_like Rap-like subf 98.9 9.2E-09 2E-13 93.5 11.3 107 183-312 48-162 (163)
202 cd01883 EF1_alpha Eukaryotic e 98.9 4.7E-09 1E-13 101.9 9.8 66 182-254 75-150 (219)
203 TIGR00437 feoB ferrous iron tr 98.9 3.8E-09 8.2E-14 116.8 10.3 151 108-312 1-154 (591)
204 PRK13705 plasmid-partitioning 98.9 3.1E-08 6.7E-13 104.3 16.5 44 99-142 104-149 (388)
205 cd04114 Rab30 Rab30 subfamily. 98.9 6.8E-09 1.5E-13 95.2 10.1 106 184-311 56-167 (169)
206 cd04147 Ras_dva Ras-dva subfam 98.9 9.6E-09 2.1E-13 97.8 11.3 110 184-313 47-163 (198)
207 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.2E-08 2.6E-13 103.4 12.4 139 78-256 19-168 (313)
208 cd04150 Arf1_5_like Arf1-Arf5- 98.9 1.8E-08 3.9E-13 92.4 12.5 149 103-310 2-158 (159)
209 PF09140 MipZ: ATPase MipZ; I 98.9 7.7E-09 1.7E-13 101.0 10.4 113 103-225 2-131 (261)
210 cd01867 Rab8_Rab10_Rab13_like 98.9 8.3E-09 1.8E-13 95.0 10.2 155 102-312 4-164 (167)
211 PLN03118 Rab family protein; P 98.9 6.7E-09 1.4E-13 99.8 9.6 155 101-312 14-176 (211)
212 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 2.4E-08 5.3E-13 93.8 12.9 109 183-312 51-169 (183)
213 cd04123 Rab21 Rab21 subfamily. 98.9 1.2E-08 2.5E-13 92.3 10.2 153 103-311 2-160 (162)
214 cd01893 Miro1 Miro1 subfamily. 98.9 1.3E-08 2.8E-13 93.7 10.6 108 183-312 46-163 (166)
215 TIGR03453 partition_RepA plasm 98.9 2.3E-08 5E-13 105.3 13.8 42 100-141 103-145 (387)
216 cd04124 RabL2 RabL2 subfamily. 98.9 1E-08 2.3E-13 93.9 9.4 105 183-312 48-157 (161)
217 PHA02519 plasmid partition pro 98.9 2.2E-08 4.8E-13 105.3 13.0 44 98-141 103-148 (387)
218 PRK05506 bifunctional sulfate 98.9 7.6E-09 1.7E-13 115.6 9.9 67 182-255 102-171 (632)
219 cd04107 Rab32_Rab38 Rab38/Rab3 98.9 1.3E-08 2.8E-13 97.1 10.1 155 103-312 2-167 (201)
220 TIGR00485 EF-Tu translation el 98.8 2.4E-08 5.2E-13 105.4 13.1 126 101-255 12-142 (394)
221 PTZ00133 ADP-ribosylation fact 98.8 3E-08 6.6E-13 93.2 12.4 152 102-312 18-177 (182)
222 COG1341 Predicted GTPase or GT 98.8 1.9E-08 4.1E-13 104.1 11.7 121 98-225 70-211 (398)
223 TIGR00484 EF-G translation elo 98.8 2.7E-08 5.8E-13 112.3 14.0 129 101-255 10-141 (689)
224 PRK13236 nitrogenase reductase 98.8 3.7E-08 8E-13 100.1 13.7 41 101-141 6-46 (296)
225 cd04101 RabL4 RabL4 (Rab-like4 98.8 1.9E-08 4.2E-13 91.7 10.5 108 183-312 51-163 (164)
226 PRK05124 cysN sulfate adenylyl 98.8 1.2E-08 2.5E-13 110.2 10.2 65 182-255 105-174 (474)
227 cd00157 Rho Rho (Ras homology) 98.8 3.1E-09 6.8E-14 97.3 5.1 161 103-310 2-170 (171)
228 cd04110 Rab35 Rab35 subfamily. 98.8 2E-08 4.3E-13 95.7 10.7 154 102-312 7-166 (199)
229 PLN00223 ADP-ribosylation fact 98.8 3.9E-08 8.5E-13 92.5 12.6 151 103-312 19-177 (181)
230 TIGR00487 IF-2 translation ini 98.8 2.8E-08 6.2E-13 109.6 13.2 158 100-310 86-247 (587)
231 cd04135 Tc10 TC10 subfamily. 98.8 5.4E-09 1.2E-13 96.4 6.4 119 183-311 47-172 (174)
232 TIGR01394 TypA_BipA GTP-bindin 98.8 3E-08 6.6E-13 109.6 13.3 176 102-314 2-192 (594)
233 CHL00189 infB translation init 98.8 2.4E-08 5.2E-13 112.1 12.6 165 99-312 242-409 (742)
234 cd04140 ARHI_like ARHI subfami 98.8 3.2E-08 6.9E-13 90.9 11.4 105 183-310 48-162 (165)
235 smart00174 RHO Rho (Ras homolo 98.8 5.9E-09 1.3E-13 96.1 6.5 120 183-312 45-171 (174)
236 TIGR02034 CysN sulfate adenyly 98.8 2.1E-08 4.5E-13 106.3 11.3 67 182-255 78-147 (406)
237 COG1192 Soj ATPases involved i 98.8 4.9E-08 1.1E-12 96.8 13.3 42 101-142 2-45 (259)
238 cd04106 Rab23_lke Rab23-like s 98.8 3E-08 6.5E-13 90.1 10.9 104 183-310 50-160 (162)
239 cd04144 Ras2 Ras2 subfamily. 98.8 2.6E-08 5.7E-13 94.0 10.7 107 183-312 46-162 (190)
240 PRK04004 translation initiatio 98.8 2.7E-08 5.8E-13 109.9 12.3 62 185-254 72-136 (586)
241 cd04112 Rab26 Rab26 subfamily. 98.8 2E-08 4.4E-13 94.9 9.8 109 183-313 49-163 (191)
242 PRK05306 infB translation init 98.8 3.2E-08 6.9E-13 112.0 13.0 158 99-310 288-449 (787)
243 cd04127 Rab27A Rab27a subfamil 98.8 2.9E-08 6.3E-13 92.2 10.5 107 183-311 62-175 (180)
244 PRK13231 nitrogenase reductase 98.8 3.4E-08 7.4E-13 98.3 11.6 39 102-141 3-41 (264)
245 cd01870 RhoA_like RhoA-like su 98.8 9.8E-09 2.1E-13 94.8 7.2 163 103-311 3-173 (175)
246 TIGR01393 lepA GTP-binding pro 98.8 3.9E-08 8.5E-13 108.8 13.1 108 183-314 69-181 (595)
247 cd00882 Ras_like_GTPase Ras-li 98.8 2.4E-08 5.2E-13 87.2 9.2 105 183-309 44-156 (157)
248 cd04175 Rap1 Rap1 subgroup. T 98.8 3.3E-08 7.1E-13 90.4 10.4 106 183-312 48-162 (164)
249 PRK00007 elongation factor G; 98.8 5.1E-08 1.1E-12 110.0 14.0 129 101-255 10-141 (693)
250 cd02034 CooC The accessory pro 98.8 3E-08 6.6E-13 86.9 9.5 87 104-194 2-97 (116)
251 cd04167 Snu114p Snu114p subfam 98.8 3.7E-08 7.9E-13 95.0 10.8 65 183-254 70-136 (213)
252 cd04122 Rab14 Rab14 subfamily. 98.8 3.3E-08 7.1E-13 90.8 10.0 107 183-311 50-162 (166)
253 TIGR00475 selB selenocysteine- 98.8 2.7E-08 5.8E-13 110.0 11.0 160 103-313 2-166 (581)
254 cd04109 Rab28 Rab28 subfamily. 98.8 2.4E-08 5.2E-13 96.4 9.2 155 103-312 2-165 (215)
255 KOG1489 Predicted GTP-binding 98.8 1.9E-08 4.2E-13 100.5 8.6 154 103-311 198-365 (366)
256 PRK10512 selenocysteinyl-tRNA- 98.8 5.6E-08 1.2E-12 107.9 13.1 160 103-313 2-166 (614)
257 cd04116 Rab9 Rab9 subfamily. 98.8 4.1E-08 8.8E-13 90.3 10.0 153 102-311 6-169 (170)
258 PRK05433 GTP-binding protein L 98.8 4E-08 8.6E-13 108.9 11.5 108 183-314 73-185 (600)
259 cd04176 Rap2 Rap2 subgroup. T 98.8 6.3E-08 1.4E-12 88.3 11.1 106 184-312 49-162 (163)
260 cd04125 RabA_like RabA-like su 98.8 4.1E-08 8.9E-13 92.3 10.0 154 103-312 2-161 (188)
261 cd01892 Miro2 Miro2 subfamily. 98.8 4.9E-08 1.1E-12 90.5 10.2 157 102-312 5-165 (169)
262 PRK10218 GTP-binding protein; 98.8 5.9E-08 1.3E-12 107.3 12.6 175 101-314 5-196 (607)
263 cd00877 Ran Ran (Ras-related n 98.7 4.4E-08 9.5E-13 90.5 9.6 105 183-312 48-158 (166)
264 PRK00741 prfC peptide chain re 98.7 8.9E-08 1.9E-12 104.5 13.3 130 101-255 10-145 (526)
265 cd01882 BMS1 Bms1. Bms1 is an 98.7 1E-07 2.2E-12 93.0 12.2 109 98-255 36-147 (225)
266 PF00025 Arf: ADP-ribosylation 98.7 8.3E-08 1.8E-12 89.8 11.2 153 100-311 13-174 (175)
267 cd04111 Rab39 Rab39 subfamily. 98.7 5.8E-08 1.3E-12 93.7 10.3 155 102-312 3-165 (211)
268 cd01885 EF2 EF2 (for archaea a 98.7 1.1E-07 2.4E-12 92.7 12.3 64 183-254 72-138 (222)
269 PTZ00369 Ras-like protein; Pro 98.7 7.8E-08 1.7E-12 90.7 10.8 153 102-312 6-166 (189)
270 cd04148 RGK RGK subfamily. Th 98.7 9.1E-08 2E-12 93.0 11.2 106 183-312 49-162 (221)
271 KOG1490 GTP-binding protein CR 98.7 1.9E-07 4.2E-12 98.2 14.1 139 101-275 168-322 (620)
272 cd04177 RSR1 RSR1 subgroup. R 98.7 1E-07 2.2E-12 87.7 11.0 107 183-311 48-162 (168)
273 PF02374 ArsA_ATPase: Anion-tr 98.7 9E-08 2E-12 97.7 11.5 39 102-140 2-40 (305)
274 cd01899 Ygr210 Ygr210 subfamil 98.7 9.3E-08 2E-12 98.0 11.6 30 286-316 242-272 (318)
275 cd04118 Rab24 Rab24 subfamily. 98.7 3.3E-08 7.1E-13 93.2 7.7 157 103-312 2-165 (193)
276 cd04132 Rho4_like Rho4-like su 98.7 3.2E-08 7E-13 92.7 7.3 110 183-312 48-166 (187)
277 TIGR03680 eif2g_arch translati 98.7 1.7E-07 3.7E-12 99.4 13.6 111 183-313 79-196 (406)
278 PRK12739 elongation factor G; 98.7 1.6E-07 3.5E-12 105.9 14.2 129 101-255 8-139 (691)
279 cd01983 Fer4_NifH The Fer4_Nif 98.7 1.9E-07 4E-12 76.9 11.0 70 103-226 1-70 (99)
280 TIGR00993 3a0901s04IAP86 chlor 98.7 1.1E-07 2.3E-12 104.1 12.1 121 101-256 118-251 (763)
281 PTZ00141 elongation factor 1- 98.7 7E-08 1.5E-12 103.5 10.6 66 181-253 82-157 (446)
282 cd04130 Wrch_1 Wrch-1 subfamil 98.7 4.2E-08 9.1E-13 90.9 7.8 118 183-309 47-170 (173)
283 cd04115 Rab33B_Rab33A Rab33B/R 98.7 9.2E-08 2E-12 88.4 9.9 114 102-255 3-123 (170)
284 TIGR00483 EF-1_alpha translati 98.7 5.6E-08 1.2E-12 103.6 9.5 67 182-255 83-155 (426)
285 TIGR00503 prfC peptide chain r 98.7 1.6E-07 3.5E-12 102.5 13.3 133 101-255 11-146 (527)
286 PRK09602 translation-associate 98.7 2.4E-07 5.1E-12 97.8 14.0 49 286-338 244-300 (396)
287 COG3596 Predicted GTPase [Gene 98.7 1.5E-07 3.3E-12 92.9 11.5 187 99-324 37-233 (296)
288 cd04146 RERG_RasL11_like RERG/ 98.7 1.2E-07 2.6E-12 86.8 10.2 106 183-311 46-162 (165)
289 COG0455 flhG Antiactivator of 98.7 3.8E-07 8.2E-12 91.0 14.2 145 101-255 2-180 (262)
290 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 2.9E-07 6.3E-12 84.9 12.3 107 104-255 2-113 (164)
291 COG0523 Putative GTPases (G3E 98.7 6.1E-08 1.3E-12 99.4 8.4 148 103-257 3-161 (323)
292 PF13614 AAA_31: AAA domain; P 98.6 2.2E-07 4.7E-12 84.6 11.1 115 102-225 1-151 (157)
293 COG2894 MinD Septum formation 98.6 1.6E-07 3.4E-12 89.8 10.1 159 103-271 4-206 (272)
294 TIGR02836 spore_IV_A stage IV 98.6 1.1E-07 2.3E-12 99.0 9.7 220 101-352 17-284 (492)
295 PRK04000 translation initiatio 98.6 5.9E-07 1.3E-11 95.4 15.5 111 184-314 85-202 (411)
296 COG0536 Obg Predicted GTPase [ 98.6 4.3E-08 9.2E-13 99.2 6.4 160 104-313 162-333 (369)
297 COG0003 ArsA Predicted ATPase 98.6 7.6E-08 1.6E-12 98.5 8.0 39 101-139 2-40 (322)
298 PLN03110 Rab GTPase; Provision 98.6 1.6E-07 3.5E-12 90.9 9.7 155 102-312 13-173 (216)
299 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 1.3E-07 2.9E-12 87.8 8.8 108 183-312 48-164 (170)
300 PLN03108 Rab family protein; P 98.6 2.1E-07 4.5E-12 89.6 10.2 154 102-312 7-167 (210)
301 PF00350 Dynamin_N: Dynamin fa 98.6 8.3E-08 1.8E-12 88.3 7.1 66 183-251 100-168 (168)
302 PRK11537 putative GTP-binding 98.6 2.5E-07 5.3E-12 95.0 11.2 149 102-256 5-165 (318)
303 cd01900 YchF YchF subfamily. 98.6 8.7E-08 1.9E-12 96.2 7.7 102 104-225 1-103 (274)
304 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 2.5E-07 5.5E-12 86.0 10.3 107 183-312 49-163 (172)
305 cd04126 Rab20 Rab20 subfamily. 98.6 3.2E-07 7E-12 89.3 11.3 107 103-255 2-114 (220)
306 cd04117 Rab15 Rab15 subfamily. 98.6 2.9E-07 6.2E-12 84.4 10.3 106 183-311 48-160 (161)
307 KOG0410 Predicted GTP binding 98.6 5.7E-07 1.2E-11 90.3 12.7 151 101-312 178-340 (410)
308 PTZ00258 GTP-binding protein; 98.6 1.6E-07 3.6E-12 98.4 8.9 105 101-225 21-126 (390)
309 cd04120 Rab12 Rab12 subfamily. 98.6 3.1E-07 6.6E-12 88.3 10.1 108 183-312 48-162 (202)
310 cd04134 Rho3 Rho3 subfamily. 98.6 1.1E-07 2.4E-12 89.7 6.9 165 103-312 2-173 (189)
311 COG1217 TypA Predicted membran 98.6 4.8E-07 1E-11 94.6 11.7 196 102-336 6-219 (603)
312 PLN00043 elongation factor 1-a 98.6 3.2E-07 6.9E-12 98.4 10.7 66 182-254 83-158 (447)
313 PF04548 AIG1: AIG1 family; I 98.5 1.3E-07 2.9E-12 91.4 7.0 120 103-256 2-131 (212)
314 cd04105 SR_beta Signal recogni 98.5 5.3E-07 1.2E-11 86.5 10.9 110 103-255 2-123 (203)
315 KOG0462 Elongation factor-type 98.5 1.7E-07 3.7E-12 99.4 7.6 173 102-315 61-237 (650)
316 cd04143 Rhes_like Rhes_like su 98.5 6E-07 1.3E-11 88.9 11.0 154 103-312 2-170 (247)
317 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.3E-07 4.9E-12 85.2 7.3 31 101-137 102-132 (157)
318 PRK09601 GTP-binding protein Y 98.5 2.9E-07 6.4E-12 95.5 8.7 102 103-225 4-107 (364)
319 PLN03071 GTP-binding nuclear p 98.5 8.7E-07 1.9E-11 86.0 11.4 151 101-312 13-171 (219)
320 cd01874 Cdc42 Cdc42 subfamily. 98.5 2.3E-07 4.9E-12 86.7 7.1 117 183-310 48-172 (175)
321 PF02881 SRP54_N: SRP54-type p 98.5 1.1E-06 2.5E-11 70.6 10.0 75 6-83 1-75 (75)
322 PRK12740 elongation factor G; 98.5 1.1E-06 2.4E-11 98.9 13.6 67 182-255 58-126 (668)
323 cd04128 Spg1 Spg1p. Spg1p (se 98.5 3.3E-07 7.2E-12 86.3 7.9 157 103-312 2-165 (182)
324 PF09439 SRPRB: Signal recogni 98.5 3.8E-07 8.1E-12 86.0 8.0 114 101-255 3-126 (181)
325 PRK13351 elongation factor G; 98.5 1.5E-06 3.2E-11 98.3 14.3 67 182-255 71-139 (687)
326 cd01871 Rac1_like Rac1-like su 98.5 2.9E-07 6.3E-12 85.9 7.2 117 183-310 48-172 (174)
327 PTZ00327 eukaryotic translatio 98.5 1E-06 2.2E-11 94.6 12.0 113 184-314 117-234 (460)
328 cd01850 CDC_Septin CDC/Septin. 98.5 6.5E-07 1.4E-11 90.1 9.6 131 100-255 3-157 (276)
329 KOG1533 Predicted GTPase [Gene 98.5 3.3E-07 7.1E-12 88.4 6.7 36 104-139 5-40 (290)
330 PLN03126 Elongation factor Tu; 98.4 1.2E-06 2.5E-11 94.7 11.7 126 101-255 81-211 (478)
331 cd04121 Rab40 Rab40 subfamily. 98.4 1.2E-06 2.5E-11 83.3 10.3 154 102-312 7-166 (189)
332 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 6.5E-07 1.4E-11 87.3 8.5 164 103-311 3-174 (222)
333 PF05049 IIGP: Interferon-indu 98.4 5.4E-06 1.2E-10 86.3 15.7 119 101-253 35-153 (376)
334 KOG3022 Predicted ATPase, nucl 98.4 1.6E-06 3.5E-11 85.6 10.5 43 101-143 47-90 (300)
335 smart00382 AAA ATPases associa 98.4 4.3E-06 9.4E-11 72.3 12.3 92 102-199 3-94 (148)
336 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 7.2E-07 1.6E-11 87.6 8.1 167 102-312 14-187 (232)
337 TIGR00347 bioD dethiobiotin sy 98.4 1.4E-06 3E-11 80.5 9.5 137 110-249 7-166 (166)
338 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 1.5E-06 3.4E-11 81.9 9.6 120 183-310 52-177 (182)
339 cd04131 Rnd Rnd subfamily. Th 98.4 1E-06 2.2E-11 82.8 8.3 119 183-310 48-173 (178)
340 TIGR02475 CobW cobalamin biosy 98.4 4E-06 8.6E-11 87.0 12.8 120 102-226 5-135 (341)
341 cd01875 RhoG RhoG subfamily. 98.4 1.7E-06 3.6E-11 82.0 9.0 120 183-312 50-176 (191)
342 KOG2743 Cobalamin synthesis pr 98.3 3.4E-06 7.4E-11 84.0 10.7 147 102-256 58-226 (391)
343 PF00142 Fer4_NifH: 4Fe-4S iro 98.3 9.5E-06 2.1E-10 80.3 13.7 164 102-272 1-206 (273)
344 cd04129 Rho2 Rho2 subfamily. 98.3 9.3E-07 2E-11 83.2 6.0 115 184-312 49-172 (187)
345 COG1149 MinD superfamily P-loo 98.3 9.3E-06 2E-10 80.2 13.0 81 182-273 162-244 (284)
346 KOG1145 Mitochondrial translat 98.3 1.8E-05 3.9E-10 84.4 15.7 160 98-310 150-313 (683)
347 PTZ00132 GTP-binding nuclear p 98.3 1.2E-05 2.6E-10 77.4 13.5 105 183-312 57-167 (215)
348 TIGR00490 aEF-2 translation el 98.3 4.5E-06 9.7E-11 94.7 12.1 65 182-254 84-151 (720)
349 PRK14493 putative bifunctional 98.3 1.5E-06 3.3E-11 87.4 7.0 89 102-196 2-100 (274)
350 smart00176 RAN Ran (Ras-relate 98.3 4E-06 8.8E-11 80.4 9.7 105 183-312 43-153 (200)
351 cd01120 RecA-like_NTPases RecA 98.3 1.2E-05 2.6E-10 72.4 12.0 40 103-142 1-40 (165)
352 COG2229 Predicted GTPase [Gene 98.2 9.3E-06 2E-10 75.8 11.1 120 101-256 10-136 (187)
353 PRK07560 elongation factor EF- 98.2 7.9E-06 1.7E-10 92.9 12.9 141 79-254 6-152 (731)
354 cd04178 Nucleostemin_like Nucl 98.2 1.6E-06 3.4E-11 81.3 5.7 56 101-194 117-172 (172)
355 PTZ00416 elongation factor 2; 98.2 2.5E-06 5.5E-11 98.1 8.4 65 183-254 91-157 (836)
356 COG1618 Predicted nucleotide k 98.2 1.3E-05 2.8E-10 73.6 10.9 95 101-197 5-114 (179)
357 PF08477 Miro: Miro-like prote 98.2 1.9E-06 4.1E-11 74.4 5.4 20 103-122 1-20 (119)
358 cd01851 GBP Guanylate-binding 98.2 6.6E-06 1.4E-10 80.3 9.7 101 100-234 6-111 (224)
359 PRK06278 cobyrinic acid a,c-di 98.2 2.7E-05 5.9E-10 83.9 14.9 187 77-272 214-414 (476)
360 COG1100 GTPase SAR1 and relate 98.2 6.5E-06 1.4E-10 78.9 9.1 114 102-256 6-126 (219)
361 PF00071 Ras: Ras family; Int 98.2 7.8E-06 1.7E-10 74.2 8.7 152 103-311 1-159 (162)
362 PRK12337 2-phosphoglycerate ki 98.2 4.7E-06 1E-10 88.7 8.0 102 35-142 185-292 (475)
363 PRK01077 cobyrinic acid a,c-di 98.2 4.3E-05 9.2E-10 82.3 15.4 158 103-271 5-174 (451)
364 COG1348 NifH Nitrogenase subun 98.1 4.7E-05 1E-09 73.7 13.8 165 102-272 2-207 (278)
365 COG4917 EutP Ethanolamine util 98.1 5.3E-06 1.2E-10 72.8 6.7 139 102-311 2-144 (148)
366 TIGR02237 recomb_radB DNA repa 98.1 3E-05 6.6E-10 74.2 12.6 44 101-144 12-55 (209)
367 PRK09361 radB DNA repair and r 98.1 4.2E-05 9E-10 74.3 13.6 48 101-148 23-70 (225)
368 TIGR03878 thermo_KaiC_2 KaiC d 98.1 5.6E-05 1.2E-09 75.4 14.3 57 101-157 36-92 (259)
369 PLN00116 translation elongatio 98.1 2E-05 4.3E-10 91.0 12.4 64 183-254 97-163 (843)
370 COG0532 InfB Translation initi 98.1 1.7E-05 3.6E-10 84.8 10.9 160 100-310 4-167 (509)
371 cd01855 YqeH YqeH. YqeH is an 98.1 4.6E-06 1E-10 78.8 5.7 22 102-123 128-149 (190)
372 PRK04220 2-phosphoglycerate ki 98.1 1E-05 2.3E-10 81.9 8.4 101 35-141 22-128 (301)
373 PRK06067 flagellar accessory p 98.1 8.2E-05 1.8E-09 72.8 14.5 39 101-139 25-63 (234)
374 cd04133 Rop_like Rop subfamily 98.1 1.2E-05 2.6E-10 75.5 8.2 118 183-312 48-172 (176)
375 cd04103 Centaurin_gamma Centau 98.1 2.1E-05 4.6E-10 72.3 9.5 103 184-311 47-157 (158)
376 COG0480 FusA Translation elong 98.1 4.8E-05 1.1E-09 85.3 14.1 215 101-344 10-249 (697)
377 PRK13886 conjugal transfer pro 98.1 8.7E-05 1.9E-09 73.1 14.2 41 103-143 4-45 (241)
378 PRK00090 bioD dithiobiotin syn 98.1 0.00015 3.4E-09 70.1 15.9 148 104-254 2-175 (222)
379 COG5256 TEF1 Translation elong 98.1 3.1E-05 6.6E-10 80.6 11.5 136 102-256 8-160 (428)
380 PRK04296 thymidine kinase; Pro 98.1 4.5E-05 9.7E-10 72.5 11.9 87 102-196 3-91 (190)
381 cd01124 KaiC KaiC is a circadi 98.1 4.4E-05 9.5E-10 71.3 11.7 36 104-139 2-37 (187)
382 COG0481 LepA Membrane GTPase L 98.1 7.2E-06 1.6E-10 86.1 6.9 110 182-314 74-187 (603)
383 cd01849 YlqF_related_GTPase Yl 98.0 6.3E-06 1.4E-10 75.4 5.6 31 101-137 100-130 (155)
384 PRK08533 flagellar accessory p 98.0 9.9E-05 2.1E-09 72.4 13.9 48 102-149 25-72 (230)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 8.6E-06 1.9E-10 73.4 5.9 29 103-137 85-113 (141)
386 cd01394 radB RadB. The archaea 98.0 0.0001 2.2E-09 71.1 13.8 39 101-139 19-57 (218)
387 TIGR03596 GTPase_YlqF ribosome 98.0 8.4E-06 1.8E-10 82.1 6.1 31 101-137 118-148 (276)
388 PRK09563 rbgA GTPase YlqF; Rev 98.0 8E-06 1.7E-10 82.7 5.5 59 101-197 121-179 (287)
389 COG5019 CDC3 Septin family pro 98.0 3.5E-05 7.6E-10 79.1 9.9 148 98-273 20-200 (373)
390 TIGR02012 tigrfam_recA protein 97.9 0.00011 2.3E-09 75.5 13.0 38 101-138 55-92 (321)
391 PF00735 Septin: Septin; Inte 97.9 2.2E-05 4.7E-10 79.4 7.7 130 102-256 5-157 (281)
392 COG1161 Predicted GTPases [Gen 97.9 1.1E-05 2.4E-10 83.0 5.8 60 101-198 132-191 (322)
393 PF13671 AAA_33: AAA domain; P 97.9 1.3E-05 2.8E-10 71.7 5.4 34 103-141 1-34 (143)
394 cd01873 RhoBTB RhoBTB subfamil 97.9 6E-05 1.3E-09 71.9 10.2 114 183-310 65-193 (195)
395 PRK00889 adenylylsulfate kinas 97.9 0.00011 2.4E-09 68.4 11.9 43 100-142 3-45 (175)
396 KOG1534 Putative transcription 97.9 6.8E-05 1.5E-09 71.5 9.9 37 103-139 5-41 (273)
397 TIGR03574 selen_PSTK L-seryl-t 97.9 5E-05 1.1E-09 75.1 9.3 38 104-141 2-39 (249)
398 PF13401 AAA_22: AAA domain; P 97.9 5.6E-05 1.2E-09 66.3 8.5 40 101-140 4-48 (131)
399 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.9 5.8E-05 1.2E-09 71.1 8.8 159 102-317 23-189 (221)
400 COG4108 PrfC Peptide chain rel 97.9 5.5E-05 1.2E-09 79.0 9.4 155 101-281 12-179 (528)
401 PRK06762 hypothetical protein; 97.9 0.00013 2.8E-09 67.3 11.0 39 101-142 2-40 (166)
402 cd01121 Sms Sms (bacterial rad 97.9 0.00018 3.9E-09 75.5 13.4 97 81-192 69-167 (372)
403 PRK04328 hypothetical protein; 97.9 0.00044 9.5E-09 68.6 15.6 39 101-139 23-61 (249)
404 PRK06526 transposase; Provisio 97.9 4.7E-05 1E-09 75.8 8.5 78 102-200 99-176 (254)
405 TIGR00313 cobQ cobyric acid sy 97.8 0.00023 5E-09 77.1 14.0 34 104-137 1-35 (475)
406 cd03109 DTBS Dethiobiotin synt 97.8 0.00025 5.4E-09 63.6 11.9 105 104-254 3-110 (134)
407 PRK06696 uridine kinase; Valid 97.8 3.5E-05 7.5E-10 75.0 6.9 43 100-142 21-63 (223)
408 PF13500 AAA_26: AAA domain; P 97.8 0.00037 8E-09 66.4 13.8 164 103-272 2-186 (199)
409 PF03193 DUF258: Protein of un 97.8 1.8E-05 3.9E-10 73.2 4.5 21 102-122 36-56 (161)
410 PHA02542 41 41 helicase; Provi 97.8 0.0013 2.7E-08 71.3 19.2 40 102-141 191-230 (473)
411 cd01393 recA_like RecA is a b 97.8 0.00033 7.2E-09 67.7 13.5 38 101-138 19-62 (226)
412 cd01122 GP4d_helicase GP4d_hel 97.8 0.00027 5.9E-09 70.4 13.2 116 102-224 31-148 (271)
413 PF06745 KaiC: KaiC; InterPro 97.8 8.9E-05 1.9E-09 72.0 9.4 53 101-157 19-72 (226)
414 cd01131 PilT Pilus retraction 97.8 0.00027 5.8E-09 67.6 12.4 81 102-193 2-84 (198)
415 TIGR03877 thermo_KaiC_1 KaiC d 97.8 0.00064 1.4E-08 66.8 15.3 39 101-139 21-59 (237)
416 cd00983 recA RecA is a bacter 97.8 0.00029 6.3E-09 72.4 12.9 38 101-138 55-92 (325)
417 PRK12289 GTPase RsgA; Reviewed 97.8 2.3E-05 5E-10 81.5 4.9 21 102-122 173-193 (352)
418 PF03205 MobB: Molybdopterin g 97.8 3.9E-05 8.5E-10 69.5 5.5 37 103-139 2-39 (140)
419 PRK05541 adenylylsulfate kinas 97.8 0.00029 6.2E-09 65.7 11.5 42 100-141 6-47 (176)
420 COG1797 CobB Cobyrinic acid a, 97.8 0.00034 7.5E-09 73.5 13.0 160 103-271 2-172 (451)
421 PRK05632 phosphate acetyltrans 97.8 0.00046 9.9E-09 78.1 15.2 141 103-254 4-155 (684)
422 PF06414 Zeta_toxin: Zeta toxi 97.8 0.00012 2.6E-09 69.9 9.0 92 98-196 12-105 (199)
423 TIGR02655 circ_KaiC circadian 97.8 0.00018 3.8E-09 78.2 11.4 54 101-158 263-316 (484)
424 cd02027 APSK Adenosine 5'-phos 97.7 0.00014 3.1E-09 66.3 9.1 40 103-142 1-40 (149)
425 COG0012 Predicted GTPase, prob 97.7 3.1E-05 6.8E-10 79.8 4.9 43 183-226 66-109 (372)
426 COG1066 Sms Predicted ATP-depe 97.7 0.00052 1.1E-08 71.6 13.7 99 77-191 76-176 (456)
427 PRK07667 uridine kinase; Provi 97.7 5.8E-05 1.3E-09 71.9 6.2 40 101-140 17-56 (193)
428 PF08433 KTI12: Chromatin asso 97.7 0.00024 5.1E-09 71.4 10.7 106 103-225 3-108 (270)
429 PRK07952 DNA replication prote 97.7 0.00015 3.3E-09 71.7 9.1 35 103-137 101-135 (244)
430 PF13481 AAA_25: AAA domain; P 97.7 0.00043 9.3E-09 65.1 11.8 40 102-141 33-82 (193)
431 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00084 1.8E-08 65.2 14.1 39 101-139 20-58 (229)
432 PRK06893 DNA replication initi 97.7 0.00011 2.5E-09 71.8 8.0 35 103-137 41-75 (229)
433 PRK12288 GTPase RsgA; Reviewed 97.7 3.6E-05 7.7E-10 80.0 4.6 27 103-135 207-233 (347)
434 PRK13796 GTPase YqeH; Provisio 97.7 8.4E-05 1.8E-09 77.9 7.4 63 102-197 161-223 (365)
435 TIGR03880 KaiC_arch_3 KaiC dom 97.7 0.00045 9.7E-09 67.0 12.0 53 101-157 16-68 (224)
436 TIGR00176 mobB molybdopterin-g 97.7 5.1E-05 1.1E-09 69.9 4.9 37 103-139 1-37 (155)
437 PF01583 APS_kinase: Adenylyls 97.7 4.9E-05 1.1E-09 70.1 4.7 42 101-142 2-43 (156)
438 KOG0090 Signal recognition par 97.7 0.0002 4.2E-09 68.6 8.8 111 101-254 38-158 (238)
439 PRK11823 DNA repair protein Ra 97.7 0.00041 8.9E-09 74.6 12.4 98 81-193 67-166 (446)
440 PRK08760 replicative DNA helic 97.7 0.0033 7.2E-08 68.2 19.5 143 101-252 229-389 (476)
441 KOG0073 GTP-binding ADP-ribosy 97.7 0.00046 1E-08 63.4 10.7 107 102-254 17-130 (185)
442 PRK14494 putative molybdopteri 97.7 8.8E-05 1.9E-09 72.6 6.6 36 102-137 2-37 (229)
443 PRK05973 replicative DNA helic 97.7 0.00057 1.2E-08 67.3 12.3 38 102-139 65-102 (237)
444 TIGR02238 recomb_DMC1 meiotic 97.7 0.0011 2.4E-08 68.0 14.9 45 101-145 96-147 (313)
445 cd01856 YlqF YlqF. Proteins o 97.7 9.2E-05 2E-09 68.9 6.3 30 102-137 116-145 (171)
446 PF03266 NTPase_1: NTPase; In 97.6 4.8E-05 1E-09 71.1 4.3 142 103-251 1-158 (168)
447 TIGR00416 sms DNA repair prote 97.6 0.00051 1.1E-08 74.0 12.7 97 81-192 81-179 (454)
448 PRK09270 nucleoside triphospha 97.6 9E-05 2E-09 72.4 6.4 43 99-141 31-74 (229)
449 PF13604 AAA_30: AAA domain; P 97.6 0.00043 9.3E-09 66.2 10.9 102 102-225 19-131 (196)
450 cd02028 UMPK_like Uridine mono 97.6 5.7E-05 1.2E-09 71.2 4.7 39 103-141 1-39 (179)
451 cd00009 AAA The AAA+ (ATPases 97.6 0.00091 2E-08 58.3 12.2 41 102-142 20-60 (151)
452 PRK04040 adenylate kinase; Pro 97.6 7.9E-05 1.7E-09 70.8 5.7 36 101-139 2-37 (188)
453 COG0529 CysC Adenylylsulfate k 97.6 7.4E-05 1.6E-09 69.6 5.2 44 99-142 21-64 (197)
454 TIGR00041 DTMP_kinase thymidyl 97.6 0.00049 1.1E-08 65.0 11.0 36 102-137 4-39 (195)
455 cd01859 MJ1464 MJ1464. This f 97.6 0.00015 3.3E-09 66.1 7.2 39 76-122 84-122 (156)
456 COG5257 GCD11 Translation init 97.6 0.00015 3.3E-09 73.1 7.6 180 100-313 9-202 (415)
457 PRK05439 pantothenate kinase; 97.6 0.00016 3.4E-09 73.9 8.0 45 98-142 83-130 (311)
458 COG2805 PilT Tfp pilus assembl 97.6 0.00016 3.5E-09 72.6 7.7 80 100-190 124-205 (353)
459 PRK13896 cobyrinic acid a,c-di 97.6 0.0013 2.8E-08 70.3 15.1 137 103-253 3-151 (433)
460 KOG2825 Putative arsenite-tran 97.6 8.4E-05 1.8E-09 72.6 5.5 40 102-141 20-59 (323)
461 TIGR03600 phage_DnaB phage rep 97.6 0.01 2.2E-07 63.3 22.1 143 102-252 195-354 (421)
462 cd04102 RabL3 RabL3 (Rab-like3 97.6 0.00032 6.8E-09 67.5 9.5 20 103-122 2-21 (202)
463 TIGR00157 ribosome small subun 97.6 6.1E-05 1.3E-09 74.6 4.7 21 102-122 121-141 (245)
464 KOG1144 Translation initiation 97.6 0.00042 9.1E-09 76.3 11.3 183 100-311 474-685 (1064)
465 PHA00729 NTP-binding motif con 97.6 0.00029 6.2E-09 68.8 8.9 24 103-126 19-42 (226)
466 PF13245 AAA_19: Part of AAA d 97.6 0.00017 3.7E-09 58.4 6.1 45 102-149 11-59 (76)
467 KOG2485 Conserved ATP/GTP bind 97.6 0.00023 5E-09 71.7 8.2 85 75-197 125-209 (335)
468 COG4088 Predicted nucleotide k 97.6 0.00042 9.1E-09 66.2 9.5 37 103-139 3-39 (261)
469 COG2019 AdkA Archaeal adenylat 97.6 0.00012 2.6E-09 67.6 5.5 25 101-125 4-28 (189)
470 PRK09354 recA recombinase A; P 97.6 0.0011 2.4E-08 68.8 13.2 38 101-138 60-97 (349)
471 PRK08233 hypothetical protein; 97.6 0.00017 3.6E-09 67.1 6.6 37 101-141 3-39 (182)
472 TIGR00665 DnaB replicative DNA 97.5 0.011 2.4E-07 63.2 21.4 114 102-224 196-313 (434)
473 PRK05480 uridine/cytidine kina 97.5 0.00013 2.7E-09 70.1 5.8 40 100-141 5-44 (209)
474 COG0050 TufB GTPases - transla 97.5 0.00077 1.7E-08 67.4 11.2 126 102-256 13-143 (394)
475 cd02025 PanK Pantothenate kina 97.5 9.8E-05 2.1E-09 71.9 5.0 38 103-140 1-40 (220)
476 cd02021 GntK Gluconate kinase 97.5 0.00067 1.5E-08 61.3 10.0 36 103-143 1-36 (150)
477 TIGR03575 selen_PSTK_euk L-ser 97.5 0.0015 3.3E-08 67.6 13.8 38 104-141 2-40 (340)
478 COG4240 Predicted kinase [Gene 97.5 0.00037 7.9E-09 67.5 8.4 43 98-140 47-90 (300)
479 cd03116 MobB Molybdenum is an 97.5 0.00016 3.4E-09 67.0 5.9 39 102-140 2-40 (159)
480 cd00984 DnaB_C DnaB helicase C 97.5 0.0017 3.7E-08 63.4 13.5 38 102-139 14-52 (242)
481 PRK10751 molybdopterin-guanine 97.5 0.00017 3.7E-09 67.7 5.9 39 100-138 5-43 (173)
482 TIGR00379 cobB cobyrinic acid 97.5 0.0016 3.4E-08 70.2 14.1 140 104-254 2-153 (449)
483 COG1763 MobB Molybdopterin-gua 97.5 0.00012 2.6E-09 67.8 4.7 37 101-137 2-38 (161)
484 PLN00023 GTP-binding protein; 97.5 0.0004 8.6E-09 71.3 8.8 21 102-122 22-42 (334)
485 TIGR00092 GTP-binding protein 97.5 0.00017 3.6E-09 75.2 6.3 103 103-225 4-108 (368)
486 PRK08506 replicative DNA helic 97.5 0.016 3.5E-07 62.9 21.7 115 102-224 193-310 (472)
487 PRK14489 putative bifunctional 97.5 0.00014 3E-09 76.3 5.6 40 100-139 204-243 (366)
488 COG1162 Predicted GTPases [Gen 97.5 0.00011 2.5E-09 74.1 4.7 23 101-123 164-186 (301)
489 TIGR03597 GTPase_YqeH ribosome 97.5 0.00013 2.8E-09 76.3 5.3 63 102-197 155-217 (360)
490 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.7E-09 63.5 4.4 32 103-139 1-32 (121)
491 PLN02796 D-glycerate 3-kinase 97.5 0.00057 1.2E-08 70.7 9.8 42 100-141 99-140 (347)
492 cd02029 PRK_like Phosphoribulo 97.5 0.00038 8.2E-09 69.5 8.2 40 103-142 1-40 (277)
493 KOG2655 Septin family protein 97.5 0.00045 9.8E-09 71.4 9.0 152 98-275 18-198 (366)
494 PRK15453 phosphoribulokinase; 97.5 0.00054 1.2E-08 68.9 9.3 43 100-142 4-46 (290)
495 KOG1486 GTP-binding protein DR 97.5 8.3E-05 1.8E-09 72.7 3.3 92 101-229 62-154 (364)
496 PRK14845 translation initiatio 97.5 0.00051 1.1E-08 80.2 10.3 116 184-310 526-670 (1049)
497 PF00004 AAA: ATPase family as 97.5 0.00035 7.6E-09 60.9 7.1 31 104-137 1-31 (132)
498 PRK13695 putative NTPase; Prov 97.5 0.008 1.7E-07 55.9 16.6 31 103-133 2-32 (174)
499 PRK08084 DNA replication initi 97.4 0.00065 1.4E-08 66.8 9.6 79 103-211 47-125 (235)
500 PRK12374 putative dithiobiotin 97.4 0.0056 1.2E-07 59.9 16.2 149 103-254 4-177 (231)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-115 Score=889.33 Aligned_cols=430 Identities=41% Similarity=0.662 Sum_probs=414.3
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|++++++|+|++++||+++++.++|||.+||++||++.+|++|++++++++.+++++++++|+++++++|++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
||+++|+....++.+...+|.+|++||++|||||||++|||.||+++|++|++|+||+|||+|++||++++.+.++|||+
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999998677777767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
..++.+|++++++++++++..+||++|||||||++.++.+++|+.++.+.+ +||+++||+||++||++.+++++|++.+
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~-~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI-NPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc-CCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 988899999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHh
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~ 321 (495)
++++||+||+|+++++|++||+.+.|++||+|+|+||++++|++|+|++++||++|+||+.+|+|++++.++++++++..
T Consensus 240 ~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~ 319 (451)
T COG0541 240 GITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLA 319 (451)
T ss_pred CCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011010 322 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 401 (495)
Q Consensus 322 ~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 401 (495)
+++.+|+|||+||++|+++|+||||+++|++||||++ ...+....+.++++++||+|||+|||++||+|| .+|++||
T Consensus 320 ~kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP--~ii~~SR 396 (451)
T COG0541 320 EKLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENP--DIINASR 396 (451)
T ss_pred HHHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCC-CCCchhhhhccHHHHHHHHHHHHcCCHHHhhCc--cccChHH
Confidence 9999999999999999999999999999999999997 222222234578999999999999999999987 8899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 402 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 402 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
++|||+||||+++|||+||+||++|++|||+|++
T Consensus 397 ~rRIA~GSG~sv~dVn~Llkq~~~m~~mmk~m~~ 430 (451)
T COG0541 397 KRRIARGSGTSVQDVNKLLKQFKQMKKMMKKMSG 430 (451)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-111 Score=837.85 Aligned_cols=483 Identities=67% Similarity=1.014 Sum_probs=452.1
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 011010 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (495)
Q Consensus 1 m~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (495)
|+|+.|+.+|++|+++++..+.+++..++..|+||++|||++||++.+|.+|.+++++.+...++..++|+++.++++|+
T Consensus 1 mvla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf 80 (483)
T KOG0780|consen 1 MVLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVF 80 (483)
T ss_pred CchHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
+||+.++++...++.+.+++|.+|+|||++|+||||+|.|||.||+++|+++++||+|+||+||+|||++++++.+||||
T Consensus 81 ~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 81 DELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 161 ~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
+++++.||+.++.+++++++.++||+|||||+|||+.+..+++||.++.+++ .||.++||+||++||.+..++++|++.
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHH
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~ 320 (495)
+.++++|+||+|+++++|+++|++++|++||+||||||+++||++|+|..|+|+++|+||+++|+|++++.. .++++++
T Consensus 240 vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el 318 (483)
T KOG0780|consen 240 VDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKEL 318 (483)
T ss_pred hccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 6778999
Q ss_pred hhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchH
Q 011010 321 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 400 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 400 (495)
.+++.+|+||++|||+|+++|.||||++++++||||++ .++...+++...+++|++++|+|||++|+|+|++.+-++|
T Consensus 319 ~~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s--~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~~~f~~~p~ 396 (483)
T KOG0780|consen 319 VEKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMS--MMSKGNEEESSAKLKRMMTMMDSMTDEELDSPELFVEEPS 396 (483)
T ss_pred HHHHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcc--cCCCcchhHHHHHHHHHHHHHHhcChhhccCccccccCch
Confidence 99999999999999999999999999999999999998 4566667888899999999999999999999976666999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhhcchhHHHhhhcCChhHHHhcCCcccHHHHHHH
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPQGMLKQIGGVGGLQNLMKQ 480 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (495)
|+.|||+|||++++||.+||.||++|+.|||+++..+ |.+..+ .||. ++.+..||..+++.+++-+.+.+|++
T Consensus 397 R~~RvArgSG~~v~eV~ell~q~~~~~~~~kk~~~~~----G~~~~l-g~~~--~~~~~~~~~~l~q~~~~~~~~~~~~~ 469 (483)
T KOG0780|consen 397 RIMRVARGSGTSVQEVMELLAQYKKFAAMMKKIGGIK----GIFGAL-GNPN--KNMNPAPMAKLKQQMAKMGPQRLLQQ 469 (483)
T ss_pred HhhhhhccCCccHHHHHHHHHHHHHHHHHHHHhcCCC----Cccccc-CCcc--cccCcCChHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999999999999998521 111222 3333 34455667777777777777888888
Q ss_pred cCCchhhcccCCCCC
Q 011010 481 MGSTKDMMGMFGGGE 495 (495)
Q Consensus 481 ~~~~~~~~~~~~~~~ 495 (495)
|+. ..||++||||.
T Consensus 470 mg~-k~mm~~fg~g~ 483 (483)
T KOG0780|consen 470 MGS-KNMMRMFGGGN 483 (483)
T ss_pred hcc-chhhHhhcCCC
Confidence 874 56888888773
No 3
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=4.2e-97 Score=772.79 Aligned_cols=427 Identities=68% Similarity=1.089 Sum_probs=405.1
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|++++++|+|+++|||+++++.+++|+.+|+++||+++++++|++++++.+.++++..+.+|.++++++|++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999888989999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
+|++++++...++.+..++|++|+|+|+||||||||+++||.+|+++|++|++|++|+||++|++||+.++++.++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999998777787777788999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
..+..+|+.++.+++++++..+||+|||||||+++.+..+++|+..+.+.+ .||+++||+||+.|+++.+++..|++.+
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~-~p~e~lLVlda~~Gq~a~~~a~~F~~~~ 239 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI-QPDNIIFVMDGSIGQAAEAQAKAFKDSV 239 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc-CCcEEEEEeccccChhHHHHHHHHHhcc
Confidence 888889999999999999888999999999999999999999999999888 9999999999999999999999999988
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHh
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~ 321 (495)
+++++|+||+|+++++|+++++...+++||.|+|+||+++++++|+|.+++|+++|+||+.+|+|++++.+++++++++.
T Consensus 240 ~~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~ 319 (429)
T TIGR01425 240 DVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALI 319 (429)
T ss_pred CCcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred hccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCc--ch
Q 011010 322 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM--ND 399 (495)
Q Consensus 322 ~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i--~~ 399 (495)
+++.+|+||++||++|+++|+||||+++||+||||++..+.+....+.++++++||+|||+|||++||++|+|.+| ++
T Consensus 320 ~k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~~~~~ 399 (429)
T TIGR01425 320 EKLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVFSKQP 399 (429)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccccCCc
Confidence 9999999999999999999999999999999999997212222223457789999999999999999999777899 89
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 011010 400 SRIMRIARGSGRQVREVMEMLEEYKRLAKI 429 (495)
Q Consensus 400 sr~~ria~gsg~~~~~v~~ll~~~~~~~~~ 429 (495)
||++|||+||||+++|||+||+||++|++|
T Consensus 400 sR~~RIa~GSG~~~~~V~~ll~~~~~~~~~ 429 (429)
T TIGR01425 400 SRIQRVARGSGRSIRDVQELLEQYKKFAQM 429 (429)
T ss_pred cHHHHHHccCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999875
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=1.5e-93 Score=750.22 Aligned_cols=426 Identities=36% Similarity=0.594 Sum_probs=405.3
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|+++++++++++.+||+++++.+++|+.+|+++||+++++.+|++++++.+.++++..+++|.++++++|++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
+|.+++++...++.+..++|.+|+++|+|||||||++++||.+|+++ |++|++|++|+||++|++||+.++.+.++|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987667777666778999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 161 ~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
......+|..++.+++..++..+||+|||||||+++.++.+++++..+...+ .|+.++||+|+++++++.++++.|++.
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v-~p~evllVlda~~gq~av~~a~~F~~~ 239 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAV-NPDEILLVVDAMTGQDAVNTAKAFNEA 239 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhh-CCCeEEEEEecccHHHHHHHHHHHHhh
Confidence 8777789999999999988888999999999999999999999999999988 999999999999999999999999998
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHH
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~ 320 (495)
++++++|+||+|+++++|.++++...+++||.|+|+||+++||++|+|.+++++++|+||+.+|+|++++.+++++++++
T Consensus 240 ~~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~ 319 (433)
T PRK10867 240 LGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKL 319 (433)
T ss_pred CCCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred hhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchH
Q 011010 321 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 400 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 400 (495)
.+++.+|+||++||++|+++|+||||+++||+||||++ .+.+ +.++++++||+|||+|||++||++| .+|++|
T Consensus 320 ~~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~-~~~~----~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~s 392 (433)
T PRK10867 320 AKKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMG-NMKA----QLDDKELKRIEAIINSMTPKERANP--DILNGS 392 (433)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCcc-cccc----cccHHHHHHHHHHHHcCCHHHHhCc--cccchH
Confidence 99999999999999999999999999999999999997 4422 3466899999999999999999987 788999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
|++|||+||||+++|||+||+||++|++|||+|++
T Consensus 393 R~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 427 (433)
T PRK10867 393 RKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMKG 427 (433)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999986
No 5
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=1.6e-91 Score=736.51 Aligned_cols=423 Identities=47% Similarity=0.763 Sum_probs=396.3
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHh
Q 011010 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK 85 (495)
Q Consensus 6 l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 85 (495)
|+++|++++++++++++|||+++++.+++|+.+|+++||+++++.+|++++++.+.+++++.++++++.++++|+++|.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC
Q 011010 86 MLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (495)
Q Consensus 86 ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~ 165 (495)
++++...++... .+|.+|+|+|+|||||||++.+||.+|.++|++|++|++|+||++|++||+.++.+.++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 998766655443 5688999999999999999999999999999999999999999999999999999999999887677
Q ss_pred CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceE
Q 011010 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGA 245 (495)
Q Consensus 166 ~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~ 245 (495)
.+|..++.++++.+. .+|+|||||||+++.++.+++|+..+.+.+ .||.+++|+|++.++++.++++.|++.+++++
T Consensus 160 ~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~-~pdevlLVvda~~gq~av~~a~~F~~~l~i~g 236 (437)
T PRK00771 160 KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAV-KPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236 (437)
T ss_pred cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHh-cccceeEEEeccccHHHHHHHHHHHhcCCCCE
Confidence 889999999998875 469999999999999999999999998888 99999999999999999999999998889999
Q ss_pred EEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHhhccc
Q 011010 246 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLS 325 (495)
Q Consensus 246 vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~ 325 (495)
+|+||+|+++++|+++++...+++||.|+|+||+++||++|+|.+++++++|+||+.+|+|++++.+++++++++.+++.
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~ 316 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316 (437)
T ss_pred EEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHHHHHH
Q 011010 326 EGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRI 405 (495)
Q Consensus 326 ~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~ri 405 (495)
+|+||++||++|+++|+||||+++|++||||++ ..++....+.++++++||+|||+|||++||++| .+|++||++||
T Consensus 317 ~~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~sR~~Ri 393 (437)
T PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLG-GKLPDEALEVTEEKLKKYKAIMDSMTEEELENP--EIINASRIRRI 393 (437)
T ss_pred cCCcCHHHHHHHHHHHHhcCCHHHHHHhCcCcc-ccchhhhhcccHHHHHHHHHHHHcCCHHHHhCc--ccccHHHHHHH
Confidence 999999999999999999999999999999997 322222234578899999999999999999987 78899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 406 ARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 406 a~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
|+||||+++|||+||+||++|++|||+|++
T Consensus 394 a~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 423 (437)
T PRK00771 394 ARGSGTTVEDVRELLKYYKMMKKAMKQLKK 423 (437)
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987
No 6
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=4.4e-91 Score=731.37 Aligned_cols=426 Identities=35% Similarity=0.598 Sum_probs=400.7
Q ss_pred hhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHH
Q 011010 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (495)
Q Consensus 3 ~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~e 82 (495)
|++|+++|++++++|++++++||+++++.+++|+.+|+++||+++++.+|++++++.+.++++..+++|.+.++++|+++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
|.+++++...++.+..++|.+++++|+|||||||++.+||.+|. +.|++|++|++|+||++|++||+.++.+.++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999987666666667789999999999999999999999987 57999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
.....+|..++.+++..+...+||+|||||||+++.++.++.++..+...+ .||.++||+|+++++++.+++..|.+.+
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~-~p~e~lLVvda~tgq~~~~~a~~f~~~v 239 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEIL-NPDEILLVVDAMTGQDAVNTAKTFNERL 239 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhh-CCceEEEEEeccchHHHHHHHHHHHhhC
Confidence 877789999999999998888999999999999999999999999999988 9999999999999999999999999888
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHh
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~ 321 (495)
+++++|+||+|++.++|.++++...+++||.|+++||+++||++|+|.+++++++|+||+.+|+|++++.+++++++++.
T Consensus 240 ~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~ 319 (428)
T TIGR00959 240 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLA 319 (428)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred hccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhh-hhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchH
Q 011010 322 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGRE-KESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 400 (495)
Q Consensus 322 ~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~-~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 400 (495)
+|+.+|+||++||++|+++|+||||+++|++||||++ ...+.... +.++++++||++||+|||++||++| .+|++|
T Consensus 320 ~~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~-~~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p--~~~~~s 396 (428)
T TIGR00959 320 EKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMG-GVKPSLSDLELDEKQFKRIEAIISSMTPEERRNP--KILNPS 396 (428)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCcc-ccccccccccccHHHHHHHHHHHHcCCHHHHhCc--ccccHH
Confidence 9999999999999999999999999999999999997 33222222 3467899999999999999999987 788999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSK 432 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~ 432 (495)
|++|||+||||+++|||+||+||++|++|||+
T Consensus 397 R~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~ 428 (428)
T TIGR00959 397 RRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428 (428)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999974
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.3e-49 Score=391.78 Aligned_cols=272 Identities=33% Similarity=0.564 Sum_probs=244.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHh-hchhhhccCCChHHHHHHHHHHHHHhhcCCCCC---C-CCC
Q 011010 22 IIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKI-VNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKP---S-FTP 96 (495)
Q Consensus 22 ~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~---~-~~~ 96 (495)
.+.++..++.+.++...|+++||.++++..++++++.. ....++ ...+.+...+.+.|..++.+... + ...
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~----~~~~~v~~~l~~~l~~il~~~~~~~~~~~~~ 134 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKI----KDEETVKEALREALIEILRPVDKVDLPLEIP 134 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccC----CCHHHHHHHHHHHHHHHhcccccccchhhhc
Confidence 34556677889999999999999999999999999884 333222 22567788888899999986432 2 223
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHH
Q 011010 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (495)
Q Consensus 97 ~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l 176 (495)
.+++|.+|+|||-+|+|||||++|||+||.++|++|.++.+||||+||++||+.|++|.++++.....+.||..++.+|+
T Consensus 135 ~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 135 KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred cCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999988668999999999999
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc-----CCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCc
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV-----NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~-----~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~ 251 (495)
++++..++|++|||||||+|+...+|.||+++.+.+. .|+++++|+||++||++..+++.|++.++++|+|+||+
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKl 294 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKL 294 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEec
Confidence 9999999999999999999999999999999988884 34559999999999999999999999999999999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
|+++++|.++++.+.+++||.|+|.||+++||.+|++..|+.++++
T Consensus 295 DgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 295 DGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999988764
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=4.8e-45 Score=372.78 Aligned_cols=295 Identities=35% Similarity=0.620 Sum_probs=267.8
Q ss_pred hhhHHHHHHHHHHHhccCC------------------------------------CCCCHHHHHHHHHHHHHHHHHcCcC
Q 011010 2 VLAQLGGSISRAIQQMSNA------------------------------------TIIDEKVLNECLNEITRALLQADVQ 45 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~------------------------------------~~~~e~~i~~~l~ei~~~Lle~dv~ 45 (495)
||+.|.++|++...++... ..++|+++++.+++|+.+|+++||+
T Consensus 1 ~f~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Ll~~dv~ 80 (336)
T PRK14974 1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVA 80 (336)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccCHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCC
Confidence 4788888888877775432 2389999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCC-----CCCCCCeEEEEEcCCCCcHHHHHHH
Q 011010 46 FKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFT-----PKKGKPSVIMFVGLQGSGKTTTCTK 120 (495)
Q Consensus 46 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~-----~~~~~~~vI~ivG~~GvGKTTl~~k 120 (495)
.+++.++.+++++.+.+..+....++.+.+.++++++|.++++... .+. ...+++.+|+|+|+|||||||++++
T Consensus 81 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 81 LEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHH
Confidence 9999999999999988777767777778899999999999997643 111 1245578999999999999999999
Q ss_pred HHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHH
Q 011010 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAA 200 (495)
Q Consensus 121 La~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~ 200 (495)
||.+|.++|++|+++++|+||++|.+||+.++.+.++|++......+|..++.++++.+...++|+|||||||+.+.+..
T Consensus 160 LA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~ 239 (336)
T PRK14974 160 LAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDAN 239 (336)
T ss_pred HHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHH
Confidence 99999999999999999999999999999999999999998888889999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCc
Q 011010 201 LFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM 280 (495)
Q Consensus 201 l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i 280 (495)
++.+++.+.+.+ .||.++||+|++.++++.+++..|.+.++++++|+||+|+++++|.++++...++.||.|+|+||++
T Consensus 240 lm~eL~~i~~~~-~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~~Gq~v 318 (336)
T PRK14974 240 LMDELKKIVRVT-KPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGY 318 (336)
T ss_pred HHHHHHHHHHhh-CCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEeCCCCh
Confidence 999999998888 9999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhhccCC
Q 011010 281 DEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 281 ~~l~~f~p~~~vS~l~G~ 298 (495)
+||++|+|..++++++|.
T Consensus 319 ~Dl~~~~~~~~v~~llg~ 336 (336)
T PRK14974 319 DDLIPFDPDWFVDKLLGE 336 (336)
T ss_pred hhcccCCHHHHHHHHhCC
Confidence 999999999999999873
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=4.6e-43 Score=357.00 Aligned_cols=287 Identities=31% Similarity=0.534 Sum_probs=254.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHH
Q 011010 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (495)
Q Consensus 4 ~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL 83 (495)
.+..+++...++++.+...+|++ .+++|+..|+++||+.+++..+++++++.....+ .++.+.+.+.++++|
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l 96 (318)
T PRK10416 25 SKTRENFGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEEL 96 (318)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHHHHHHHHHHHH
Confidence 34456677778888887788986 4578999999999999999999999988765433 344567899999999
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccC
Q 011010 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY 163 (495)
Q Consensus 84 ~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~ 163 (495)
.+++++...++....+++.+++|+|++|||||||+.+||.++...|++|+++++|+||++|.+|+..|+.+.+++++...
T Consensus 97 ~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~ 176 (318)
T PRK10416 97 AEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK 176 (318)
T ss_pred HHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC
Confidence 99998655555554556789999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc-----CCCEEEEEeeCCccccHHHHHHHHh
Q 011010 164 TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV-----NPDLVIFVMDSSIGQAAFDQAQAFK 238 (495)
Q Consensus 164 ~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~-----~~d~vllVvDa~~g~~~~~~~~~f~ 238 (495)
...+|...+.+++..+...+||+|||||||+.+.+..+++|++.+...+. .|+.+++|+||+.++++..++..|.
T Consensus 177 ~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 177 EGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 77889888888888888889999999999999999999999988876542 5899999999999999999999998
Q ss_pred ccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCC
Q 011010 239 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 239 ~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~ 298 (495)
+..+++++|+||+|+++++|.++++...++.||.|+|+||+++||++|+|..++++++|.
T Consensus 257 ~~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 257 EAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred hhCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 888899999999999999999999999999999999999999999999999999999873
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=2.1e-42 Score=345.40 Aligned_cols=264 Identities=32% Similarity=0.562 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 011010 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (495)
Q Consensus 28 i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~iv 107 (495)
+++.+++|+..|+++||+.+++.+|.+++.+.....+.. ....+.+.++++|.+++.....++....+++++|+|+
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~ 78 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILFV 78 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEE
Confidence 457889999999999999999999999998876544332 2456789999999999876434454545667899999
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEE
Q 011010 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (495)
Q Consensus 108 G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvv 187 (495)
|++|+||||++++||.+|+++|++|+++++|+||+++.+||+.|+.+.+++++......||...+.+++..+...+||+|
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~V 158 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 158 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999988777778898888888888877899999
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHHhcC------CCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 188 IVDTSGRHKQEAALFEEMRQVSEATVN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 188 iIDTaG~~~~~~~l~~el~~i~~~i~~------~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
||||||+.+.+..+++|++.+.+.+ . ||.+++|+|++.++++..++..|.+.+++.++|+||+|++.++|.++
T Consensus 159 iIDT~G~~~~d~~~~~el~~~~~~~-~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l 237 (272)
T TIGR00064 159 LIDTAGRLQNKVNLMDELKKIKRVI-KKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIIL 237 (272)
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHH-hcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHH
Confidence 9999999999999999999988877 5 99999999999999998999999988889999999999999999999
Q ss_pred HHHHhcCCCeEEeccCCCcccccccCccchhhhcc
Q 011010 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 296 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~ 296 (495)
++...++.||.|+++||+++|+++|+|+.++++++
T Consensus 238 ~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 238 SIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 99999999999999999999999999999998874
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=6.2e-41 Score=319.68 Aligned_cols=196 Identities=42% Similarity=0.654 Sum_probs=185.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
|++|+||||+|||||||++|||++++.+|++|++|++|+||+||++||+.+++..++|++......+|.+++.++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 67999999999999999999999999889999999999999999999999999999999998888899999999999998
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccch
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ 260 (495)
.+++|+|||||||+++.+...+++++.+.+.+ .+++++||++++.+++..+.+..|.+..+++++|+||+|++.+.|.+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~ 159 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGAL 159 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccc
Confidence 88999999999999999999999999999998 99999999999999999889999998888999999999999999999
Q ss_pred hHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 261 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 261 ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
+++...++.||.|+++||+++||++|+|..++++++|
T Consensus 160 l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 160 LSLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999987
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-38 Score=320.25 Aligned_cols=284 Identities=24% Similarity=0.486 Sum_probs=255.3
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCC
Q 011010 11 SRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG 90 (495)
Q Consensus 11 ~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~ 90 (495)
-..|+.|-|...|+|+++++.|+.++..|+.-.|+.+.+..+.+.|...+.+..+....+-...+..++++.|+.+|.+.
T Consensus 281 Fg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQILTP~ 360 (587)
T KOG0781|consen 281 FGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQILTPQ 360 (587)
T ss_pred HHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHcCCC
Confidence 35677888999999999999999999999999999999999999999988877765554556778999999999999875
Q ss_pred CCCC-------CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc------Cc
Q 011010 91 KPSF-------TPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA------KI 157 (495)
Q Consensus 91 ~~~~-------~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~------~i 157 (495)
.+-- .-+.++|.+|.|||-.||||||.++|+|.||.+++++|+|+.|||||+||+|||+.++++. -|
T Consensus 361 ~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v 440 (587)
T KOG0781|consen 361 RSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMV 440 (587)
T ss_pred chhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchh
Confidence 4311 1234679999999999999999999999999999999999999999999999999999997 68
Q ss_pred ceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHH
Q 011010 158 PFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAF 237 (495)
Q Consensus 158 ~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f 237 (495)
++|....+.|+..+|++|+++++..+||+||||||||.|.+..+|..+..+...- .||.|++|-.|-.|.++++++..|
T Consensus 441 ~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~-~pd~i~~vgealvg~dsv~q~~~f 519 (587)
T KOG0781|consen 441 ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVN-KPDLILFVGEALVGNDSVDQLKKF 519 (587)
T ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcC-CCceEEEehhhhhCcHHHHHHHHH
Confidence 9999889999999999999999999999999999999999999999999998888 999999999999999999999999
Q ss_pred hccC-------CceEEEEeCccC-CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhc
Q 011010 238 KQSV-------SVGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 295 (495)
Q Consensus 238 ~~~~-------~~~~vIlTK~D~-~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l 295 (495)
+.++ .++++|+||+|. +.+.|++++..+.++.||.|+|+|+...||........++.+
T Consensus 520 n~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 520 NRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred HHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 8753 378999999998 566799999999999999999999999999887766666554
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.5e-34 Score=296.59 Aligned_cols=258 Identities=19% Similarity=0.337 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEE
Q 011010 27 VLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMF 106 (495)
Q Consensus 27 ~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~i 106 (495)
.....+..|...|++.||+.+++..+.+.+....... ...++ ..+.+.+.+.+...+..... . ..++++|+|
T Consensus 175 ~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~---~~~~~-~~~~~~l~~~l~~~l~~~~~---~-~~~~~vI~L 246 (436)
T PRK11889 175 SVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENA---TMITE-EEVIEYILEDMRSHFNTENV---F-EKEVQTIAL 246 (436)
T ss_pred ccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhccc---ccCCH-HHHHHHHHHHHHHHhccccc---c-ccCCcEEEE
Confidence 3445668899999999999999999999876542221 11222 45667777887777764311 1 234678999
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh-cCCc
Q 011010 107 VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCD 185 (495)
Q Consensus 107 vG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~-~~~d 185 (495)
+|++||||||++++||.+|..+|++|+++++|+||++|++||+.++...++|++... +|..+ .+++..+.. .++|
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~D 322 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVD 322 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999987643 45444 467777754 3799
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhccCCceEEEEeCccCCCCccchhHHH
Q 011010 186 LIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 264 (495)
Q Consensus 186 vviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~ 264 (495)
+|||||||+.+.+...+.++.++.... .|+.++||+||+.+. +..+++..|.. ++++++|+||+|+++++|.++++.
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~ 400 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIP 400 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhc-CCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHH
Confidence 999999999999889999998888777 899999999997654 56788899986 789999999999999999999999
Q ss_pred HhcCCCeEEeccCCCc-ccccccCccchhhhccCC
Q 011010 265 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 265 ~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~ 298 (495)
..+++||.|+|+||++ +|+..+++..++..++|.
T Consensus 401 ~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 401 AVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 9999999999999999 789999999999988875
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.5e-34 Score=297.05 Aligned_cols=260 Identities=22% Similarity=0.299 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 011010 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (495)
Q Consensus 30 ~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~ 109 (495)
+.+.+|...|+++||+.+++.++.+.+++.....+. .....+.+.+.+.|.+.+... .++. ....+++|+++|+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~~-~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSII-DNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Cccc-cCCCCeEEEEECC
Confidence 457889999999999999999999998776543322 123446667777777766432 2222 1234679999999
Q ss_pred CCCcHHHHHHHHHHHHHH----cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCc
Q 011010 110 QGSGKTTTCTKYAYYHQK----KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (495)
Q Consensus 110 ~GvGKTTl~~kLa~~l~~----~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~d 185 (495)
+|||||||+++||.+|.. +|++|++|++|+||++|.+||+.+++..++|+..... + .....++..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~-~~l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F-KDLKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H-HHHHHHHHHh--CCCC
Confidence 999999999999999873 5899999999999999999999999999999866443 2 2234445444 5899
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccchhHHH
Q 011010 186 LIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 264 (495)
Q Consensus 186 vviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~ 264 (495)
+|||||||+++.+...+.++.++......+.+++||+||++++.... ....|. .++++++|+||+|+++++|.++++.
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 99999999998776667788888777633558999999998865544 334443 3678999999999999999999999
Q ss_pred HhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHH
Q 011010 265 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSG 303 (495)
Q Consensus 265 ~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~ 303 (495)
..+++||.|+++||++ +|+.+|+|..+++.++|+- +.+
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~-~~~ 374 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR-ISD 374 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC-ccc
Confidence 9999999999999999 8999999999999999987 533
No 15
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4.9e-34 Score=292.03 Aligned_cols=254 Identities=21% Similarity=0.337 Sum_probs=210.0
Q ss_pred HHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 011010 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (495)
Q Consensus 33 ~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~Gv 112 (495)
+|+.+.|.+.+|.-+++.++.+.+......... .+ ...+.+.+.+.|...+.... .+.. .++.+++|+|++||
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~---~~-~~~v~~~~~~~L~~~l~~~~-~~~~--~~~~ii~lvGptGv 217 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVET---AH-LDDITDWFVPYLSGKLAVED-SFDL--SNHRIISLIGQTGV 217 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---cc-HHHHHHHHHHHhcCcEeeCC-Ccee--cCCeEEEEECCCCC
Confidence 489999999999999999999988665322111 12 24566777777777765432 2222 34678999999999
Q ss_pred cHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh-cCCcEEEEeC
Q 011010 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCDLIIVDT 191 (495)
Q Consensus 113 GKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~-~~~dvviIDT 191 (495)
|||||+++||.++.++|++|++|++|+||+||.+||+.++...++|++.. .+|.++ .+++..+.. .++|+|||||
T Consensus 218 GKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEEC
Confidence 99999999999998899999999999999999999999999999998753 356654 667777652 5799999999
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCC
Q 011010 192 SGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSP 270 (495)
Q Consensus 192 aG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~P 270 (495)
||+++.+..++.++..+...+ .|+.+++|++++... +..+.+..|. .++++++|+||+|+++++|.++++...++.|
T Consensus 294 AGr~~~d~~~l~EL~~l~~~~-~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglP 371 (407)
T PRK12726 294 VGRNYLAEESVSEISAYTDVV-HPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLP 371 (407)
T ss_pred CCCCccCHHHHHHHHHHhhcc-CCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCC
Confidence 999999999999999888888 899999999986543 4445555554 5788999999999999999999999999999
Q ss_pred eEEeccCCCcc-cccccCccchhhhccCCC
Q 011010 271 VIFIGTGEHMD-EFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 271 I~fi~~Ge~i~-~l~~f~p~~~vS~l~G~G 299 (495)
|.|+|+||+++ ++..+++..++.+++|.+
T Consensus 372 Isylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 372 VLYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 99999999995 699999999999999876
No 16
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=5e-34 Score=314.51 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCC-CCCCCCCCCeEEEEEc
Q 011010 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKP-SFTPKKGKPSVIMFVG 108 (495)
Q Consensus 30 ~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~-~~~~~~~~~~vI~ivG 108 (495)
+...+++..|+++||+.+++.+|++++.+.. ++ ..+.+.++++|.+.+..... .+.. ..+.+|+|||
T Consensus 125 ~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~~-~~~~~~l~~~L~~~l~il~~~~~~~--~~g~Vi~lVG 192 (767)
T PRK14723 125 PLRASLFRWLLGAGFSGQLARALLERLPVGY---------DR-PAAMAWIRNELATHLPVLRDEDALL--AQGGVLALVG 192 (767)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------CH-HHHHHHHHHHHHHHhhhccCCCccc--CCCeEEEEEC
Confidence 4457799999999999999999999886532 22 33678888888887643211 1112 2356999999
Q ss_pred CCCCcHHHHHHHHHHHHH-HcC-CceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcE
Q 011010 109 LQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDL 186 (495)
Q Consensus 109 ~~GvGKTTl~~kLa~~l~-~~G-~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dv 186 (495)
++|||||||+++||.++. .+| ++|+++++|+||+|+.+||+.++...++|++... +|.+ +.+++..+. ++|+
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~~--~~D~ 266 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAALG--DKHL 266 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHhc--CCCE
Confidence 999999999999999885 556 6999999999999999999999999999987644 4544 567777664 7899
Q ss_pred EEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH-HHHHHHhcc--CCceEEEEeCccCCCCccchhHH
Q 011010 187 IIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF-DQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSA 263 (495)
Q Consensus 187 viIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~-~~~~~f~~~--~~~~~vIlTK~D~~~~~g~~ls~ 263 (495)
|||||||+++.+..+++++..+.... .|+++++|+|+++..+.. +++..|... .+++++|+||+|++.++|.++++
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~-~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i 345 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVG-RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDT 345 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccC-CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHH
Confidence 99999999999988999998877766 899999999999876655 467888764 37899999999999999999999
Q ss_pred HHhcCCCeEEeccCCCc-ccccccCccchhhhccCCC
Q 011010 264 VAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 264 ~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~G 299 (495)
...+++||.|+++||++ +||++|+|..++..+++.+
T Consensus 346 ~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 346 VIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred HHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 99999999999999999 8999999999999999854
No 17
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.3e-33 Score=293.11 Aligned_cols=266 Identities=20% Similarity=0.266 Sum_probs=214.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCC-C
Q 011010 20 ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-K 98 (495)
Q Consensus 20 ~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~-~ 98 (495)
...|+++...+.+.+|+..|++.||+.+++.++++.+.+.....+.. ....+...+.+.|.+.+......+... .
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~----~~~~~~~~l~~~L~~~l~~~~~~~~~~g~ 220 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG----RNHNVTERAVTYLEERVSVDSDLFSGTGK 220 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHhcccchhhhhhccc
Confidence 45579999999999999999999999999999999988765433221 124567788888888875432222111 1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH-HHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l-~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
.++.+++|+|++||||||++.+||.++ ...|++|+++++|+||+++.+||+.++...++|++.... +.+...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-------~~~l~~ 293 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-------IKKFKE 293 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH-------HHHHHH
Confidence 345689999999999999999999876 567999999999999999999999999999998764211 233344
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc--CCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV--NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~--~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
.+...++|+|||||||+.+.+...++++..+..... .+..++||+||+.+++....+..+.+.++++++|+||+|+++
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 444568999999999999888888999988877652 356899999999998665544443367899999999999999
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhcc
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLL 296 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~ 296 (495)
++|.++++...+++||.|+++||++ +|+.++.+..++..++
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 9999999999999999999999999 7899988887776665
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=4.8e-34 Score=281.10 Aligned_cols=253 Identities=22% Similarity=0.290 Sum_probs=206.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.++++|+|+|+||||||||+|+|. |.|++|||. +++|||..|. +..+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~-----------k~QTTR~~I~--GI~t~------------- 51 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRNRIR--GIVTT------------- 51 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHh------cCceEeecC-----------Ccchhhhhee--EEEEc-------------
Confidence 357899999999999999999999 999999999 9999999885 43442
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+.+++|||||||+|.....+.+.| +.+..++.++|.++||+|+..+.. +..++..++...-+..+++||+|...
T Consensus 52 ---~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 52 ---DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred ---CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 378999999999999888888888 455578889999999999986443 33355666552234699999999876
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHHhhccccch
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGN 328 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~ 328 (495)
....+++.. +......+|...+++|++.|.+ ++.|++.+.+++| ++..++..+||...|
T Consensus 129 ~~~~l~~~~-------------~~~~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aE 194 (298)
T COG1159 129 PKTVLLKLI-------------AFLKKLLPFKEIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAE 194 (298)
T ss_pred cHHHHHHHH-------------HHHHhhCCcceEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHH
Confidence 644334443 3344556788889999999999 9999999999885 677889999999999
Q ss_pred hcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhh-hhhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHH
Q 011010 329 FTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKE-SQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRI 405 (495)
Q Consensus 329 f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ri 405 (495)
+++|+++..+++ +|||.. +| .+.... .++..-++.|.|. +||++||++|| +|+++|+|
T Consensus 195 iiREk~~~~l~e------------ElPhsv-~V--eIe~~~~~~~~~~~I~a~I~----Ver~sQK~IiIGk~G~~iK~I 255 (298)
T COG1159 195 IIREKLLLLLRE------------ELPHSV-AV--EIEEFEEREKGLLKIHATIY----VERESQKGIIIGKNGAMIKKI 255 (298)
T ss_pred HHHHHHHHhccc------------ccCceE-EE--EEEEEEecCCCeEEEEEEEE----EecCCccceEECCCcHHHHHH
Confidence 999999999999 999987 55 443322 2567789999996 99999999988 89999999
Q ss_pred HhhcCCCHHHHHHHHHH
Q 011010 406 ARGSGRQVREVMEMLEE 422 (495)
Q Consensus 406 a~gsg~~~~~v~~ll~~ 422 (495)
+..|+ +++++|+.+
T Consensus 256 G~~AR---~~ie~l~~~ 269 (298)
T COG1159 256 GTAAR---KDIEKLLGC 269 (298)
T ss_pred HHHHH---HHHHHHhCC
Confidence 99999 888887754
No 19
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=4.8e-32 Score=287.60 Aligned_cols=274 Identities=21% Similarity=0.305 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHH
Q 011010 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (495)
Q Consensus 4 ~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL 83 (495)
++|.+.|...+..+.+... ..-.....+|+..|+++||..+++.++++++++....++ ....+++.|
T Consensus 173 ~~lr~~l~~~~~~l~~~~~---~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~~----------~~~~l~~~l 239 (484)
T PRK06995 173 RSLRGMLEEQLASLAWGER---QRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAEA----------ALDWVQSAL 239 (484)
T ss_pred HHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchhH----------HHHHHHHHH
Confidence 4566667767777653221 112456688999999999999999999999877643322 234444555
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 84 ~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~-~~G-~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
.+.+....... ....++.+++|+|++|||||||+++||.++. ++| ++|++|++|+||.++++||+.|+...+++++.
T Consensus 240 ~~~l~~~~~~~-~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 240 AKNLPVLDSED-ALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred HHHHhhccCcc-ccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 44443211111 1112346999999999999999999999885 456 59999999999999999999999999998876
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhcc
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQS 240 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~ 240 (495)
.....+... .+ ....++++++|||+|+.+.+..+.+.+..+.... .|...+||+|++.+..... .+..|. .
T Consensus 319 ~~~~~Dl~~----aL--~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~-~p~e~~LVLdAt~~~~~l~~i~~~f~-~ 390 (484)
T PRK06995 319 VKDAADLRL----AL--SELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAG-APVKRLLLLNATSHGDTLNEVVQAYR-G 390 (484)
T ss_pred cCCchhHHH----HH--HhccCCCeEEeCCCCcChhhHHHHHHHHHHhccC-CCCeeEEEEeCCCcHHHHHHHHHHhc-c
Confidence 544433221 12 2234789999999999988776666555554444 5788999999998776655 455554 4
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCC
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~G 299 (495)
.+++++|+||+|++.+.|.++++...+++||.|+|+||++ +||++|++..++.++++.+
T Consensus 391 ~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 391 PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 6789999999999999999999999999999999999999 9999999999999999865
No 20
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=7.2e-32 Score=284.80 Aligned_cols=257 Identities=24% Similarity=0.363 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 011010 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (495)
Q Consensus 25 e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI 104 (495)
.....+.+++|...|+++||+.+++.++.+.+.+....... .+.+.+.+.|.+.+....... .. ...++
T Consensus 156 ~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~~--~~~~i 224 (424)
T PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-LK--QGGVV 224 (424)
T ss_pred cccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-cc--CCcEE
Confidence 34567788999999999999999999999988776433221 357888899999887654443 22 24589
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH--HcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 105 MFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 105 ~ivG~~GvGKTTl~~kLa~~l~--~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+|++|||||||+++||.++. ..|++|++|++|+||.++.+||+.++...++|++...+..+ ....+..+ .
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~----l~~~l~~~--~ 298 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE----LAKALEQL--R 298 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHh----HHHHHHHh--C
Confidence 9999999999999999999997 45899999999999999999999999999999876554332 23334443 3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
++|+|||||||+.+.+...+.++..+......+..+++|++++.+..... ....|. .++++++|+||+|++...|.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHH
Confidence 79999999999999888888888777763326789999999998776555 445554 5678899999999999999999
Q ss_pred HHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCC
Q 011010 262 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~G 299 (495)
+++..+++||.|+++|+++ +|+++|+|..++++++|..
T Consensus 378 ~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 378 SLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred HHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999998 8999999999999998754
No 21
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.3e-31 Score=266.42 Aligned_cols=259 Identities=19% Similarity=0.360 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 011010 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (495)
Q Consensus 25 e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI 104 (495)
.+.+.+.++++++.|+++||+.+++.++.+.... ..+... .....+.+.+.+.+...++... . + .+++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i--~f~~~~---~~~~~vl~~v~~~l~~~~~~~~-~--~-~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKV--KFENAT---MITEEVIEYILEDMSSHFNTEN-V--F-EKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceE--EecCCC---ccccHHHHHHhcccEEeeCCcc-c--c-cCCCCEE
Confidence 3566778899999999999999999999875422 221111 0122334445555544443221 1 1 2345689
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh-cC
Q 011010 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-EN 183 (495)
Q Consensus 105 ~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~-~~ 183 (495)
+|+|++|+||||++..|+.++..++.+|+++++|+||.++++|++.++...+++++... ++..+ .+++..+.. .+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~---~~~~l-~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC---CHHHH-HHHHHHHHhcCC
Confidence 99999999999999999999988899999999999999999999999999998876533 34443 456666643 47
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-cccHHHHHHHHhccCCceEEEEeCccCCCCccchhH
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI-GQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALS 262 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~-g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls 262 (495)
+|+|||||||+.+.+...++++..+.... .|+.++||+||+. +++..++++.|.. ++++++|+||+|++.++|.+++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~ 232 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQV-EPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLK 232 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHH
Confidence 99999999999999999999998888888 8999999999975 5577789999986 7889999999999999999999
Q ss_pred HHHhcCCCeEEeccCCCc-ccccccCccchhhhccCC
Q 011010 263 AVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 263 ~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~ 298 (495)
+...+++||.|+|+||++ +|+..+++..++..++|.
T Consensus 233 ~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 233 IPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999999999999 689999999999988874
No 22
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.98 E-value=3.5e-31 Score=271.56 Aligned_cols=191 Identities=30% Similarity=0.472 Sum_probs=168.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~--~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.++|++|||+|||||||++|||+.|. .+.++|+||+.|+||.||.+||+.++...++|+..+.+..+ ...++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e----l~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKE----LAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHH----HHHHHHH
Confidence 57999999999999999999999998 55789999999999999999999999999999988666322 2344555
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH-HHHHHHHhccCCceEEEEeCccCCCCc
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA-FDQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~-~~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
+. .+|+|||||+|+.+.|....++|+.+.... .+..++||++++..... .++...|. .+++.++|+||+|++...
T Consensus 279 l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 279 LR--DCDVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSL 354 (407)
T ss_pred hh--cCCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCch
Confidence 43 789999999999999999999999999888 88999999999875544 44566665 478899999999999999
Q ss_pred cchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~G 299 (495)
|.+.+++..+++||.|+++|+.+ +|+....|..++++++|.-
T Consensus 355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 99999999999999999999999 7899999999999999853
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=5.3e-30 Score=268.35 Aligned_cols=248 Identities=19% Similarity=0.264 Sum_probs=196.3
Q ss_pred HHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCC
Q 011010 32 LNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQG 111 (495)
Q Consensus 32 l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~G 111 (495)
...|...|+++||+.+++..+.+.+......++. .+.+...+.+.|..+ ... . .. ..+.+++|||++|
T Consensus 134 ~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~~------~~~~~~~l~~~l~~~-~~~--~-~~--~~g~vi~lvGpnG 201 (420)
T PRK14721 134 GMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQS------LKKTISLLTLNLRTI-GGD--E-II--EQGGVYALIGPTG 201 (420)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHhc-CCc--c-cc--CCCcEEEEECCCC
Confidence 3778899999999999999999988765432211 123344444444322 111 1 11 2346899999999
Q ss_pred CcHHHHHHHHHHHHH-Hc-CCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEE
Q 011010 112 SGKTTTCTKYAYYHQ-KK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIV 189 (495)
Q Consensus 112 vGKTTl~~kLa~~l~-~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviI 189 (495)
||||||+++||.++. .. +.++.++++|+||.++.+|+..+++..++|++...+..+. ..++..+ .++|+++|
T Consensus 202 ~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl----~~al~~l--~~~d~VLI 275 (420)
T PRK14721 202 VGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL----QLMLHEL--RGKHMVLI 275 (420)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH----HHHHHHh--cCCCEEEe
Confidence 999999999998765 33 4789999999999999999999999999998765553332 2333333 47899999
Q ss_pred eCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccchhHHHHhcC
Q 011010 190 DTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATK 268 (495)
Q Consensus 190 DTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~ 268 (495)
||+|+.+.+..+++++..+.... .++.++||+|++++..... .+..|. .++++++|+||+|++.+.|.+++++..++
T Consensus 276 DTaGrsqrd~~~~~~l~~l~~~~-~~~~~~LVl~at~~~~~~~~~~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~~~~ 353 (420)
T PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCG-TQVKHLLLLNATSSGDTLDEVISAYQ-GHGIHGCIITKVDEAASLGIALDAVIRRK 353 (420)
T ss_pred cCCCCCcchHHHHHHHHHHhccC-CCceEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeeeCCCCccHHHHHHHHhC
Confidence 99999998888888888776544 7889999999997665555 455554 57899999999999999999999999999
Q ss_pred CCeEEeccCCCc-ccccccCccchhhhccCCC
Q 011010 269 SPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 269 ~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~G 299 (495)
+||.|+++|+++ +|++++++..++.++++.+
T Consensus 354 lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 354 LVLHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred CCEEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 999999999999 8999999999999999855
No 24
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=7.2e-30 Score=263.74 Aligned_cols=251 Identities=22% Similarity=0.308 Sum_probs=195.0
Q ss_pred HHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 011010 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (495)
Q Consensus 33 ~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~Gv 112 (495)
..|...|++.+++..++..+.+.+....... +. ......+.+.|...+...... ...-.+..+++|+|++||
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~------~~-~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~ii~lvGptGv 148 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEGYD------TL-DAAADWAQSVLAANLPVLDSE-DALMERGGVFALMGPTGV 148 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhcccC------CH-HHHHHHHHHHHHhcchhhcCC-CccccCCcEEEEECCCCC
Confidence 6788999999999999999999875531111 11 122334444444433322111 111123458999999999
Q ss_pred cHHHHHHHHHHHHHH-cC-CceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEe
Q 011010 113 GKTTTCTKYAYYHQK-KG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVD 190 (495)
Q Consensus 113 GKTTl~~kLa~~l~~-~G-~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviID 190 (495)
|||||+++||.++.. .| .+|+++++|+||+++.+||+.+++..+++++...+..+.. .++..+ .++|+||||
T Consensus 149 GKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~----~~l~~l--~~~DlVLID 222 (374)
T PRK14722 149 GKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ----LALAEL--RNKHMVLID 222 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH----HHHHHh--cCCCEEEEc
Confidence 999999999998764 46 6999999999999999999999999999998766655543 233333 478999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccC--------CceEEEEeCccCCCCccchh
Q 011010 191 TSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSV--------SVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 191 TaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~--------~~~~vIlTK~D~~~~~g~~l 261 (495)
|||+.+.+..+.+++..+.... .++.+++|++|+.+.+... .++.|.... +++++|+||+|++.+.|.++
T Consensus 223 TaG~~~~d~~l~e~La~L~~~~-~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l 301 (374)
T PRK14722 223 TIGMSQRDRTVSDQIAMLHGAD-TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVL 301 (374)
T ss_pred CCCCCcccHHHHHHHHHHhccC-CCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHH
Confidence 9999988888888887765544 7889999999998877654 567787642 47899999999999999999
Q ss_pred HHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCC
Q 011010 262 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~ 298 (495)
+++..+++||.|+++|+++ +|+.+..+..++.+.++.
T Consensus 302 ~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~ 339 (374)
T PRK14722 302 DTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCA 339 (374)
T ss_pred HHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhcc
Confidence 9999999999999999999 679999998888887763
No 25
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=99.97 E-value=8.2e-32 Score=230.40 Aligned_cols=100 Identities=48% Similarity=0.807 Sum_probs=89.7
Q ss_pred hhcHHHHHHHHHHHhccCChhHHhhcCCCCCCcc---Cch-hhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHHHH
Q 011010 328 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL---MPK-GREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIM 403 (495)
Q Consensus 328 ~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~---~~~-~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~ 403 (495)
+||++||++|+++++||||+++|++||||++ .. ++. ...+.+++++++|++||+|||++||++| .+|++||++
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~-~~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p--~ll~~sR~~ 77 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMG-NMMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNP--KLLNESRRR 77 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSS-SS-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCG--GGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCcc-ccccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCc--cccchHHHH
Confidence 5999999999999999999999999999998 34 232 2244578889999999999999999986 889999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 011010 404 RIARGSGRQVREVMEMLEEYKRLAKIW 430 (495)
Q Consensus 404 ria~gsg~~~~~v~~ll~~~~~~~~~~ 430 (495)
|||+|||++++|||+||++|++|++||
T Consensus 78 RIA~GSG~~~~eV~~ll~~f~~~~~mm 104 (104)
T PF02978_consen 78 RIARGSGTTVQEVNELLKQFKQMKKMM 104 (104)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999997
No 26
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.95 E-value=9.4e-27 Score=247.17 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC
Q 011010 31 CLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ 110 (495)
Q Consensus 31 ~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~ 110 (495)
.-..+.+.|++.++...++.++.+.+...... ......+.+.|.+.+.-....+ +. ...+|+|+|++
T Consensus 293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~----------~~~~~~l~~~L~~~l~v~~~~~-l~--~G~vIaLVGPt 359 (559)
T PRK12727 293 VRAQALELMDDYGFDAGLTRDVAMQIPADTEL----------HRGRGLMLGLLSKRLPVAPVDP-LE--RGGVIALVGPT 359 (559)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcccch----------hhHHHHHHHHHHHhcCcCcccc-cc--CCCEEEEECCC
Confidence 34567789999999999999999987553221 1224566777777764332222 12 24689999999
Q ss_pred CCcHHHHHHHHHHHHHHc--CCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEE
Q 011010 111 GSGKTTTCTKYAYYHQKK--GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188 (495)
Q Consensus 111 GvGKTTl~~kLa~~l~~~--G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvvi 188 (495)
|+|||||+++|+.++..+ +++|+++++|+||.++.+||+.++...++++...... ......+..+ .++|+||
T Consensus 360 GvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~----~~L~~aL~~l--~~~DLVL 433 (559)
T PRK12727 360 GAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSA----ESLLDLLERL--RDYKLVL 433 (559)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcH----HHHHHHHHHh--ccCCEEE
Confidence 999999999999988765 5899999999999999999999999999887654322 2233445444 3799999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhc
Q 011010 189 VDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAAT 267 (495)
Q Consensus 189 IDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~ 267 (495)
|||||+.+.+..+++++..+... .....++|++++.+. +..+.++.|.. .++.++|+||+|++.+.|.+++++..+
T Consensus 434 IDTaG~s~~D~~l~eeL~~L~aa--~~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~ 510 (559)
T PRK12727 434 IDTAGMGQRDRALAAQLNWLRAA--RQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDH 510 (559)
T ss_pred ecCCCcchhhHHHHHHHHHHHHh--hcCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHh
Confidence 99999988887887777655443 345788999988654 44456677765 467899999999999999999999999
Q ss_pred CCCeEEeccCCCc-ccccccCccchhhhccC
Q 011010 268 KSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 268 ~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G 297 (495)
++||.|+++|+++ +||+++++..+++++..
T Consensus 511 ~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~ 541 (559)
T PRK12727 511 QMPITWVTDGQRVPDDLHRANAASLVLRLED 541 (559)
T ss_pred CCCEEEEeCCCCchhhhhcCCHHHHHHHHHH
Confidence 9999999999999 89999999888887643
No 27
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=3.7e-27 Score=235.71 Aligned_cols=248 Identities=19% Similarity=0.244 Sum_probs=181.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|+||||||||+|+|. |.++++|+. ++.+|+..+. +... ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~-----------~~~TTr~~i~--~i~~----------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSP-----------KAQTTRNRIS--GIHT----------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCC-----------CCCcccCcEE--EEEE----------------cC
Confidence 69999999999999999999 999999998 7778876543 2222 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccch
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~ 260 (495)
++.++|+||||.+.....+.+.+ +.+...+..+|.+++|+|++....... ....+.....+..+|+||+|...+. ..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-~~ 125 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-KL 125 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-HH
Confidence 56789999999875544444444 334455668999999999986543322 2333333333468999999986332 11
Q ss_pred hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHHhhccccchhcHHH
Q 011010 261 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGNFTLRI 333 (495)
Q Consensus 261 ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~f~~~d 333 (495)
..... .......|.+..++|+..|.| ++.|++.+.+.++ ++..++..+++...|+.+|.
T Consensus 126 ~~~~~-------------~~~~~~~~~~v~~iSA~~g~g-i~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~ 191 (270)
T TIGR00436 126 LPLID-------------KYAILEDFKDIVPISALTGDN-TSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK 191 (270)
T ss_pred HHHHH-------------HHHhhcCCCceEEEecCCCCC-HHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 22111 111223455678899999999 9999999999774 55668888999999999999
Q ss_pred HHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhh-hhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHHhhcC
Q 011010 334 MYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES-QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIARGSG 410 (495)
Q Consensus 334 ~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~-~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ria~gsg 410 (495)
++..+++ ++||.. .+ .+..+.. +....+|.|.|. +||++||++|| +|+++|+|+..|+
T Consensus 192 ~~~~~~~------------e~p~~~-~~--~~~~~~~~~~~~~~i~~~i~----v~~~s~k~iiig~~g~~ik~i~~~ar 252 (270)
T TIGR00436 192 IIRYTKE------------EIPHSV-RV--EIERKSFNEKGLLKIHALIS----VERESQKKIIIGKNGSMIKAIGIAAR 252 (270)
T ss_pred HHHhccc------------ccCceE-EE--EEEEEEECCCCeEEEEEEEE----ECcCCceeEEEcCCcHHHHHHHHHHH
Confidence 9999999 999976 44 3322222 222346899996 99999999888 7999999999999
Q ss_pred CCHHHHHHHHHH
Q 011010 411 RQVREVMEMLEE 422 (495)
Q Consensus 411 ~~~~~v~~ll~~ 422 (495)
+|+++++.+
T Consensus 253 ---~~l~~~~~~ 261 (270)
T TIGR00436 253 ---KDILELFDC 261 (270)
T ss_pred ---HHHHHHhCC
Confidence 999988753
No 28
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.94 E-value=2e-25 Score=208.21 Aligned_cols=172 Identities=45% Similarity=0.720 Sum_probs=155.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+++++|+||+||||++.+++..+.+.|++|+++++|+||+++.+|+..++.+.+++++......++..+..+.+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999888777778888888888877777
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchhH
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALS 262 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls 262 (495)
++|++||||||....+.....++..+.... .+|.+++|+|+..+.+..+.+..|.+..++.++|+||+|...+.|.+++
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~-~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~ 160 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVV-KPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALS 160 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhc-CCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhh
Confidence 999999999999877777888887777766 7999999999988877778888887767789999999999999999999
Q ss_pred HHHhcCCCeEEec
Q 011010 263 AVAATKSPVIFIG 275 (495)
Q Consensus 263 ~~~~~~~PI~fi~ 275 (495)
+...++.|+.|+|
T Consensus 161 ~~~~~~~p~~~~~ 173 (173)
T cd03115 161 IRAVTGKPIKFIG 173 (173)
T ss_pred hHHHHCcCeEeeC
Confidence 9999999999986
No 29
>PRK00089 era GTPase Era; Reviewed
Probab=99.94 E-value=2.1e-26 Score=232.33 Aligned_cols=250 Identities=21% Similarity=0.267 Sum_probs=181.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++++|+++|+|||||||++|.|. |.++++++. .+.+++..+.... +
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~-----------~~~tt~~~i~~i~--~--------------- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRHRIRGIV--T--------------- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCC-----------CCCcccccEEEEE--E---------------
Confidence 46789999999999999999999 999999998 5556665543221 1
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
.++++++++||||.+.....+.+.+ ......+..+|.+++|+|++... ........+...-.+..+|+||+|....
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 1257899999999976655554444 23345555899999999998632 2222333333322346899999998633
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHHhhccccchh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGNF 329 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~f 329 (495)
........ +.+.+...+.+..++|+..|.| ++.|++.+.+.++ ++..++...++...|+
T Consensus 129 ~~~l~~~~-------------~~l~~~~~~~~i~~iSA~~~~g-v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~Ei 194 (292)
T PRK00089 129 KEELLPLL-------------EELSELMDFAEIVPISALKGDN-VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEI 194 (292)
T ss_pred HHHHHHHH-------------HHHHhhCCCCeEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 22222222 1222223456677899999999 9999999998874 4556778889999999
Q ss_pred cHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHHh
Q 011010 330 TLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIAR 407 (495)
Q Consensus 330 ~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ria~ 407 (495)
.++.++.++++ ++||.. .+ .+...... ...+|.|.|. +||++|+++|| +|+++|+|+.
T Consensus 195 iRe~~~~~l~~------------e~p~~~-~v--~~~~~~~~-~~~~i~~~i~----v~~~~~k~i~ig~~g~~i~~i~~ 254 (292)
T PRK00089 195 IREKLLRLLGD------------ELPYSV-AV--EIEKFEER-GLVRIEATIY----VERDSQKGIIIGKGGAMLKKIGT 254 (292)
T ss_pred HHHHHHhhCCc------------cCCceE-EE--EEEEEEEC-CeEEEEEEEE----EccCCceeEEEeCCcHHHHHHHH
Confidence 99999999999 999986 44 33222222 4456899996 99999999888 7999999999
Q ss_pred hcCCCHHHHHHHHH
Q 011010 408 GSGRQVREVMEMLE 421 (495)
Q Consensus 408 gsg~~~~~v~~ll~ 421 (495)
.|+ .++++++.
T Consensus 255 ~ar---~~l~~~~~ 265 (292)
T PRK00089 255 EAR---KDIEKLLG 265 (292)
T ss_pred HHH---HHHHHHhC
Confidence 999 88777765
No 30
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=7.9e-26 Score=233.12 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=180.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|.|||||||++|.|. |.++++++. ++.+|+..+... .+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~-----------k~~tTr~~~~~~--~~--------------- 96 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRII------GEKLSIVTP-----------KVQTTRSIITGI--IT--------------- 96 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHh------CCceeeccC-----------CCCCccCcEEEE--EE---------------
Confidence 44579999999999999999999 999998887 666666543211 11
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
.++++++|+||||.+.....+...+ +.....+..+|.++||+|+..+.+..+ ....+.....+..+|+||+|....
T Consensus 97 -~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 97 -LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred -eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc
Confidence 1257899999999865444444444 333344558999999999876433322 233333222234789999998533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC-------CCCCchHHhhccccchh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV-------PMDQQPELLQKLSEGNF 329 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~-------~~~~~~~~~~~~~~~~f 329 (495)
...... +.+....++.+..++|++.|.| ++.|++++.+.+ |++..++..+++...|+
T Consensus 176 --~~~~~~-------------~~l~~~~~~~~i~~iSAktg~g-v~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~ei 239 (339)
T PRK15494 176 --YLNDIK-------------AFLTENHPDSLLFPISALSGKN-IDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEI 239 (339)
T ss_pred --cHHHHH-------------HHHHhcCCCcEEEEEeccCccC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 111111 1112223445667899999999 999999999976 46778899999999999
Q ss_pred cHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhh-hhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHHH
Q 011010 330 TLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES-QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRIA 406 (495)
Q Consensus 330 ~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~-~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ria 406 (495)
.+|.++..+++ +|||.. ++ .+..+.+ ++...+|.|.|. +||++||++|| +|+++|+|+
T Consensus 240 iRe~~~~~~~~------------EiP~~~-~v--~i~~~~~~~~~~~~i~~~i~----v~~~sqk~iiiG~~g~~ik~i~ 300 (339)
T PRK15494 240 TREQLFLNLQK------------ELPYKL-TV--QTEKWEDLKDKSVKINQVIV----VSRESYKTIILGKNGSKIKEIG 300 (339)
T ss_pred HHHHHHhhCCc------------ccCceE-EE--EEEEEEEcCCCeEEEEEEEE----ECCCCceeEEEcCCcHHHHHHH
Confidence 99999999999 999986 45 3322222 223456899996 99999999988 799999999
Q ss_pred hhcCCCHHHHHHHHH
Q 011010 407 RGSGRQVREVMEMLE 421 (495)
Q Consensus 407 ~gsg~~~~~v~~ll~ 421 (495)
..|+ +|+++++.
T Consensus 301 ~~ar---~~le~~~~ 312 (339)
T PRK15494 301 AKSR---MQMERFFG 312 (339)
T ss_pred HHHH---HHHHHHhC
Confidence 9999 88888875
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=210.99 Aligned_cols=234 Identities=20% Similarity=0.224 Sum_probs=177.2
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
...+.|+++++| .++..+.+|++.|++.-..+++..||.|+..+......+ ..-.+.+.++|.+++
T Consensus 140 ~a~r~A~~~l~G-------~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i-------~~~l~~~~~~l~~ll 205 (454)
T COG0486 140 QAARIALRQLQG-------ALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKI-------REKLEELIAELDELL 205 (454)
T ss_pred HHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHH-------HHHHHHHHHHHHHHH
Confidence 467889999999 899999999999999999999999999983333332223 233567889999999
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC
Q 011010 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d 167 (495)
.....+..+++|- .++|+|+|||||||++|.|+ ++..+||+. .++|||+-++.+...
T Consensus 206 ~~~~~g~ilr~G~--kvvIiG~PNvGKSSLLNaL~------~~d~AIVTd-----------I~GTTRDviee~i~i---- 262 (454)
T COG0486 206 ATAKQGKILREGL--KVVIIGRPNVGKSSLLNALL------GRDRAIVTD-----------IAGTTRDVIEEDINL---- 262 (454)
T ss_pred HhhhhhhhhhcCc--eEEEECCCCCcHHHHHHHHh------cCCceEecC-----------CCCCccceEEEEEEE----
Confidence 9888887787776 59999999999999999999 999999999 999999988765533
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHH-HHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCce
Q 011010 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVG 244 (495)
Q Consensus 168 p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~e-l~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~ 244 (495)
.++.+.|+||||.+..++..... +++....+..+|.++||+|++...+..+ ... ........
T Consensus 263 --------------~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~ 327 (454)
T COG0486 263 --------------NGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPI 327 (454)
T ss_pred --------------CCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCE
Confidence 38999999999998665433332 4777777789999999999997422222 222 22222346
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 245 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 245 ~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.+|+||.|+...... +.+ .+..-++...+|++.|.| ++.|.+++.+.+.
T Consensus 328 i~v~NK~DL~~~~~~------------------~~~-~~~~~~~~i~iSa~t~~G-l~~L~~~i~~~~~ 376 (454)
T COG0486 328 IVVLNKADLVSKIEL------------------ESE-KLANGDAIISISAKTGEG-LDALREAIKQLFG 376 (454)
T ss_pred EEEEechhccccccc------------------chh-hccCCCceEEEEecCccC-HHHHHHHHHHHHh
Confidence 999999999765321 111 122333556778888888 8888888877664
No 32
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.80 E-value=1.5e-18 Score=174.80 Aligned_cols=149 Identities=30% Similarity=0.342 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 011010 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (495)
Q Consensus 28 i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~iv 107 (495)
..+.+.+++..|+++||+.+++.++.+++.+.. +...+...+.+.|.+.+........+. ..+.+|+|+
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vi~~v 200 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPERA----------DAEDAWRWLREALEKMLPVKPEEDEIL-EQGGVIALV 200 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC----------CHHHHHHHHHHHHHHHhccCCcccccc-CCCeEEEEE
Confidence 445678999999999999999999999887531 124467889999999887322222121 246799999
Q ss_pred cCCCCcHHHHHHHHHHHHHHc-C-CceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCc
Q 011010 108 GLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (495)
Q Consensus 108 G~~GvGKTTl~~kLa~~l~~~-G-~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~d 185 (495)
|++|||||||+++||.++..+ | ++|++|++|+||+++++||..++...++|++... ++.+ ..+++..+ .++|
T Consensus 201 GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~-l~~~l~~~--~~~d 274 (282)
T TIGR03499 201 GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKE-LRKALDRL--RDKD 274 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHH-HHHHHHHc--cCCC
Confidence 999999999999999999876 5 9999999999999999999999999999986643 3333 34566655 3699
Q ss_pred EEEEeCCC
Q 011010 186 LIIVDTSG 193 (495)
Q Consensus 186 vviIDTaG 193 (495)
+|||||||
T Consensus 275 ~vliDt~G 282 (282)
T TIGR03499 275 LILIDTAG 282 (282)
T ss_pred EEEEeCCC
Confidence 99999998
No 33
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=8.6e-20 Score=179.55 Aligned_cols=264 Identities=16% Similarity=0.231 Sum_probs=171.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.+...|+++|.|||||||++|.+. |.+|+.|+. +..+|+..+ .++.+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~-----------K~~TTr~~i--lgi~ts------------- 117 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSR-----------KVHTTRHRI--LGIITS------------- 117 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhh------CCccccccc-----------cccceeeee--eEEEec-------------
Confidence 456789999999999999999999 999999999 999999877 344442
Q ss_pred HhhcCCcEEEEeCCCCCcch-----HHHHHHHHHHHHHhcCCCEEEEEeeCCc--ccc---HHHHHHHHhccCCceEEEE
Q 011010 179 FKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATVNPDLVIFVMDSSI--GQA---AFDQAQAFKQSVSVGAVIV 248 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~-----~~l~~el~~i~~~i~~~d~vllVvDa~~--g~~---~~~~~~~f~~~~~~~~vIl 248 (495)
..+++||+||||.-... ...+..++....++..+|.+++|+|++. .+- ..+....+.. + +..+|+
T Consensus 118 ---~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~-i-ps~lvm 192 (379)
T KOG1423|consen 118 ---GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK-I-PSILVM 192 (379)
T ss_pred ---CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc-C-Cceeec
Confidence 36899999999973222 1222334566677779999999999983 222 2333344433 2 368999
Q ss_pred eCccCCCCccchhHHHHh-cCCCeE--EeccCCCcccc------------cccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 249 TKMDGHAKGGGALSAVAA-TKSPVI--FIGTGEHMDEF------------EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 249 TK~D~~~~~g~~ls~~~~-~~~PI~--fi~~Ge~i~~l------------~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
||+|......-++..... ++--+. -...-+++.+. .-|...+++|++.|.| +++|-+++-...+
T Consensus 193 nkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~G-ikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 193 NKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEG-IKDLKQYLMSQAP 271 (379)
T ss_pred cchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccC-HHHHHHHHHhcCC
Confidence 999986554333333221 100000 00000111111 1255678999999999 9999999988774
Q ss_pred C-------CCchHHhhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhh-hhhHhHhhcCCC
Q 011010 314 M-------DQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAK-IKRYMTMMDSMT 385 (495)
Q Consensus 314 ~-------~~~~~~~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~ii~smt 385 (495)
. +-.++...++...+..++.+++++.| ++||-- ++ .+..+.+... .-.|..=+ -+
T Consensus 272 ~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pq------------EVPY~l-q~--~i~~w~e~~~g~l~I~~~v--~~ 334 (379)
T KOG1423|consen 272 PGPWKYPADIVTEESPEFLCSESVREKLLDHLPQ------------EVPYNL-QV--RILSWKERPAGVLFIQVEV--VC 334 (379)
T ss_pred CCCCCCCcccccccCHHHHHHHHHHHHHHhhCcc------------ccCcce-EE--EEEEeeecCCcEEEEEEEE--Ec
Confidence 2 22345667778889999999999999 999965 23 3334433221 11221111 12
Q ss_pred HHhhcCCCCCCc--chHHHHHHHhhcCCCHHHHHHHHHH
Q 011010 386 NEELDSSNPKLM--NDSRIMRIARGSGRQVREVMEMLEE 422 (495)
Q Consensus 386 ~~er~~~~~~~i--~~sr~~ria~gsg~~~~~v~~ll~~ 422 (495)
+++|.. ..+| +|.++++||+.++ .|+.+++.+
T Consensus 335 pK~s~~--klliGkgG~ki~qI~~~a~---~dL~~if~r 368 (379)
T KOG1423|consen 335 PKNSQK--KLLIGKGGKKISQIGTRAN---EDLEDIFQR 368 (379)
T ss_pred CCCcce--eEEEcCCCccHHHHHHHHH---HHHHHHhhc
Confidence 444442 2344 6899999999999 887776643
No 34
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=172.24 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+|+|||+||||||||.|.|+ |.+++||+. .++.||+.+.-... .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D-----------~pGvTRDr~y~~~~------------------~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSD-----------TPGVTRDRIYGDAE------------------W 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeec-----------CCCCccCCccceeE------------------E
Confidence 479999999999999999999 999999999 88999988733222 2
Q ss_pred cCCcEEEEeCCCCCcch-HHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCc
Q 011010 182 ENCDLIIVDTSGRHKQE-AALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~-~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
.+..+.+|||+|....+ +.+.+.+ .+...++..+|.++||+|+..|..+. ..++.+...-.+..+|+||+|.....
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE 128 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh
Confidence 36789999999998655 4566666 45567777999999999999876544 46677765546679999999986221
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......+ .|. |....++|+.+|.| +..|++++.+.+
T Consensus 129 -~~~~efy----------------slG-~g~~~~ISA~Hg~G-i~dLld~v~~~l 164 (444)
T COG1160 129 -ELAYEFY----------------SLG-FGEPVPISAEHGRG-IGDLLDAVLELL 164 (444)
T ss_pred -hhHHHHH----------------hcC-CCCceEeehhhccC-HHHHHHHHHhhc
Confidence 1111111 111 22336799999999 999999999997
No 35
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=1.5e-17 Score=177.69 Aligned_cols=231 Identities=18% Similarity=0.191 Sum_probs=155.9
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhh
Q 011010 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (495)
Q Consensus 7 ~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l 86 (495)
...++.|+++++| .++..+..||..|++.-..+++..||.++.......+.+ ..-+..+..+|.++
T Consensus 137 ~~~~~~al~~l~G-------~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i-------~~~i~~l~~~l~~l 202 (449)
T PRK05291 137 EAAARLALRQLQG-------ALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKI-------LEKLEELIAELEAL 202 (449)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHH-------HHHHHHHHHHHHHH
Confidence 3578899999999 899999999999999999999999998864332222222 23356788888888
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCC
Q 011010 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (495)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~ 166 (495)
+.........+.+ ..|+++|.|||||||++|.|+ +.++++++. .+.+|+.-+.....
T Consensus 203 ~~~~~~~~~~~~~--~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~-----------~~gtT~d~~~~~i~---- 259 (449)
T PRK05291 203 LASARQGEILREG--LKVVIAGRPNVGKSSLLNALL------GEERAIVTD-----------IAGTTRDVIEEHIN---- 259 (449)
T ss_pred HHHHHHHHHhhcC--CEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCcccccEEEEEE----
Confidence 7765444334333 369999999999999999999 888877776 34444433221111
Q ss_pred ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHH--HHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHh-ccCCc
Q 011010 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE--MRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK-QSVSV 243 (495)
Q Consensus 167 dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~e--l~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~-~~~~~ 243 (495)
..++.+.|+||||..... ...+. +.+....+..+|.+++|+|++......+ ...+. ....+
T Consensus 260 --------------~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-~~~l~~~~~~p 323 (449)
T PRK05291 260 --------------LDGIPLRLIDTAGIRETD-DEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-DEILEELKDKP 323 (449)
T ss_pred --------------ECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-HHHHHhcCCCC
Confidence 126788999999986433 22222 2334444558999999999976533222 11122 11234
Q ss_pred eEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 244 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 244 ~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..+|+||+|....... . .....+...+|+..|.| ++.|++++.+.+.
T Consensus 324 iiiV~NK~DL~~~~~~--~--------------------~~~~~~~i~iSAktg~G-I~~L~~~L~~~l~ 370 (449)
T PRK05291 324 VIVVLNKADLTGEIDL--E--------------------EENGKPVIRISAKTGEG-IDELREAIKELAF 370 (449)
T ss_pred cEEEEEhhhccccchh--h--------------------hccCCceEEEEeeCCCC-HHHHHHHHHHHHh
Confidence 5899999998543110 0 01123456789999999 9999999988764
No 36
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.72 E-value=9.5e-17 Score=164.35 Aligned_cols=224 Identities=18% Similarity=0.166 Sum_probs=139.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc---hhH--H--HHHhhhhhcCcceecc---CCCCCh
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GAF--D--QLKQNATKAKIPFYGS---YTESDP 168 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~---~a~--d--qL~~~a~~~~i~~~~~---~~~~dp 168 (495)
+++.+|.|+|+|||||||++..|+.++...|++|++++.|+..+ ||+ | .....+...++-+... .....+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 45779999999999999999999999999999999999998443 342 2 2222233223211111 112235
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEE
Q 011010 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 248 (495)
Q Consensus 169 ~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIl 248 (495)
...+.+++..+...+||++||||+|..+.... + ...+|.+++|+++..+.+.........+.. ..+|+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~-------i---~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a--DIiVV 201 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETA-------V---AGMVDFFLLLQLPGAGDELQGIKKGIMELA--DLIVI 201 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhH-------H---HHhCCEEEEEecCCchHHHHHHHhhhhhhh--heEEe
Confidence 66778888888888999999999999854432 1 225899999998665554433222122212 47999
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC----CCCCchH---Hh
Q 011010 249 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPE---LL 321 (495)
Q Consensus 249 TK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~----~~~~~~~---~~ 321 (495)
||+|+..+.+.. ........-+.+.. ...+ ..-.|..++|+..|.| ++.|++.+.+++ +.+..++ ..
T Consensus 202 NKaDl~~~~~a~-~~~~el~~~L~l~~--~~~~--~w~~pVi~vSA~~g~G-IdeL~~~I~~~~~~l~~sg~l~~~r~~~ 275 (332)
T PRK09435 202 NKADGDNKTAAR-RAAAEYRSALRLLR--PKDP--GWQPPVLTCSALEGEG-IDEIWQAIEDHRAALTASGEFAARRREQ 275 (332)
T ss_pred ehhcccchhHHH-HHHHHHHHHHhccc--cccc--CCCCCEEEEECCCCCC-HHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 999987554321 11110000000000 0000 0114678899999999 999999999975 3444433 23
Q ss_pred hccccchhcHHHHHHHHHH
Q 011010 322 QKLSEGNFTLRIMYEQFQN 340 (495)
Q Consensus 322 ~~~~~~~f~~~d~~~ql~~ 340 (495)
.+..-.++..+.+++.+..
T Consensus 276 ~~~~v~elire~l~~~~~~ 294 (332)
T PRK09435 276 QVDWMWEMVEEGLLDRLFA 294 (332)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333356666666666655
No 37
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-16 Score=166.49 Aligned_cols=244 Identities=15% Similarity=0.165 Sum_probs=167.2
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
.....|+..+.| .+......|+..|+++...++...+|-++..... .+.+ +-.. -...+.+++...+
T Consensus 190 ~q~~~Al~~v~g-------~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~-~~t~-~~~~----~~~~l~d~v~s~l 256 (531)
T KOG1191|consen 190 SQRRAALDEVAG-------EALALCFGWRKILIEALAGLEARIDFEEERPLEE-IETV-EIFI----ESLSLLDDVLSHL 256 (531)
T ss_pred hhhhhhhhhhcc-------hhHHhhhhHHHHHHHHHhccceeechhhcCchhh-ccch-hhhh----HHHHHHHHHHHHH
Confidence 345667777777 4545556699999999999999999977532221 1111 0000 1122556777777
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC
Q 011010 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d 167 (495)
........+..|. -|+|+|+|||||||++|.|+ ...++||+. .+.+||+-|+.....
T Consensus 257 ~~~~~~e~lq~gl--~iaIvGrPNvGKSSLlNaL~------~~drsIVSp-----------v~GTTRDaiea~v~~---- 313 (531)
T KOG1191|consen 257 NKADEIERLQSGL--QIAIVGRPNVGKSSLLNALS------REDRSIVSP-----------VPGTTRDAIEAQVTV---- 313 (531)
T ss_pred HhhhhHHHhhcCC--eEEEEcCCCCCHHHHHHHHh------cCCceEeCC-----------CCCcchhhheeEeec----
Confidence 7655555555554 59999999999999999999 999999999 889999887654422
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHH--HHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhcc-C-
Q 011010 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE--MRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-V- 241 (495)
Q Consensus 168 p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~e--l~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~-~- 241 (495)
.|+.+.|+||||......+..+. +.+..+.+..+|.+++|+||..+. ....+++..... .
T Consensus 314 --------------~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g 379 (531)
T KOG1191|consen 314 --------------NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVG 379 (531)
T ss_pred --------------CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccc
Confidence 38999999999987733333333 356666666999999999995332 222333332211 0
Q ss_pred ----------CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 242 ----------SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 242 ----------~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....++.||.|...+.. ..++.|+.|.+. +.. ..|.+..++|+.+++| +..|.+.+.+.
T Consensus 380 ~~~~~~~~~~~~~i~~~nk~D~~s~~~------~~~~~~~~~~~~-~~~---~~~~i~~~vs~~tkeg-~~~L~~all~~ 448 (531)
T KOG1191|consen 380 LVVIVNKMEKQRIILVANKSDLVSKIP------EMTKIPVVYPSA-EGR---SVFPIVVEVSCTTKEG-CERLSTALLNI 448 (531)
T ss_pred eEEEeccccccceEEEechhhccCccc------cccCCceecccc-ccC---cccceEEEeeechhhh-HHHHHHHHHHH
Confidence 22467889998876532 345677877765 332 2345567799999999 99999988776
Q ss_pred C
Q 011010 312 V 312 (495)
Q Consensus 312 ~ 312 (495)
+
T Consensus 449 ~ 449 (531)
T KOG1191|consen 449 V 449 (531)
T ss_pred H
Confidence 5
No 38
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.67 E-value=9.9e-16 Score=158.76 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=136.4
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
.+|+.++.+|++ .++..+..|+. |......+.+ ++.++-........+ ..-+..+..+|.++.
T Consensus 112 ~klqv~la~l~~-------~l~r~~~~~~~-l~~~~~~i~~--~g~gE~~~~~~~~~i-------~~ri~~l~~~L~~~~ 174 (351)
T TIGR03156 112 GKLQVELAQLKY-------LLPRLVGGWTH-LSRQGGGIGT--RGPGETQLETDRRLI-------RERIAQLKKELEKVE 174 (351)
T ss_pred HHHHHHHHhccc-------hhhhhhhhHHH-HHhhcCCCCC--CCCChhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 478899999998 67777777776 6555444433 222221111111122 233567777887777
Q ss_pred CCCCCCCCCC--CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC
Q 011010 88 DPGKPSFTPK--KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (495)
Q Consensus 88 ~~~~~~~~~~--~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~ 165 (495)
.........+ .+ ...|+++|.|||||||++|+|+ +.+ .+++. ..++|+....-....
T Consensus 175 ~~~~~~r~~r~~~~-~~~ValvG~~NvGKSSLln~L~------~~~-~~v~~-----------~~~tT~d~~~~~i~~-- 233 (351)
T TIGR03156 175 KQRERQRRRRKRAD-VPTVALVGYTNAGKSTLFNALT------GAD-VYAAD-----------QLFATLDPTTRRLDL-- 233 (351)
T ss_pred HHHHHHHhhhcccC-CcEEEEECCCCCCHHHHHHHHh------CCc-eeecc-----------CCccccCCEEEEEEe--
Confidence 6533222222 22 2479999999999999999999 766 44444 233443322111101
Q ss_pred CChHHHHHHHHHHHhhcCCcEEEEeCCCCC-cchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH------HHHHHHh
Q 011010 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRH-KQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF------DQAQAFK 238 (495)
Q Consensus 166 ~dp~~ia~~~l~~~~~~~~dvviIDTaG~~-~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~------~~~~~f~ 238 (495)
..+..+.|+||||+. .....+.+..+.....+..+|.+++|+|++...... .....+.
T Consensus 234 ---------------~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~ 298 (351)
T TIGR03156 234 ---------------PDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG 298 (351)
T ss_pred ---------------CCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc
Confidence 025688999999983 223445555555555555899999999998543211 1222222
Q ss_pred ccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 239 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 239 ~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....+..+|+||+|..... .+.... ..+.+..++|+..|.| ++.|++.+.+.
T Consensus 299 ~~~~piIlV~NK~Dl~~~~--~v~~~~------------------~~~~~~i~iSAktg~G-I~eL~~~I~~~ 350 (351)
T TIGR03156 299 AEDIPQLLVYNKIDLLDEP--RIERLE------------------EGYPEAVFVSAKTGEG-LDLLLEAIAER 350 (351)
T ss_pred cCCCCEEEEEEeecCCChH--hHHHHH------------------hCCCCEEEEEccCCCC-HHHHHHHHHhh
Confidence 1123468999999985421 111110 0112357799999999 99999988764
No 39
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=1.8e-15 Score=161.25 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=130.2
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhh
Q 011010 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (495)
Q Consensus 7 ~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l 86 (495)
....+.|+++++| .++..+..||..|++.-..+++..||.|+..+. .++ ...+..+..+|.++
T Consensus 129 ~~~~~~A~~~l~G-------~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~---~~~-------~~~l~~~~~~l~~l 191 (442)
T TIGR00450 129 NKVKDIALNKLAG-------ELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ---DSL-------NQLLLSIIAELKDI 191 (442)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH---HHH-------HHHHHHHHHHHHHH
Confidence 3577899999999 899999999999999999999999999863111 122 22346667777777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCC
Q 011010 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (495)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~ 166 (495)
+... ....++. +..|+++|+|||||||++|.|. +...++|+. .+.+++.-+.....
T Consensus 192 l~~~-~~~~~~~--g~kVvIvG~~nvGKSSLiN~L~------~~~~aivs~-----------~pgtTrd~~~~~i~---- 247 (442)
T TIGR00450 192 LNSY-KLEKLDD--GFKLAIVGSPNVGKSSLLNALL------KQDRAIVSD-----------IKGTTRDVVEGDFE---- 247 (442)
T ss_pred HHHH-HHHHhhc--CCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcEEEEEEEEEE----
Confidence 7765 2233333 3369999999999999999999 777777765 44455443221111
Q ss_pred ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHH-HHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCce
Q 011010 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFE-EMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVG 244 (495)
Q Consensus 167 dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~-el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~ 244 (495)
.+++.+.|+||||.....+.... .+......+..+|.+++|+|++......+ ..........+.
T Consensus 248 --------------~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~pi 313 (442)
T TIGR00450 248 --------------LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPF 313 (442)
T ss_pred --------------ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCE
Confidence 13677899999998644322211 12333445558999999999986543222 222222222345
Q ss_pred EEEEeCccCCC
Q 011010 245 AVIVTKMDGHA 255 (495)
Q Consensus 245 ~vIlTK~D~~~ 255 (495)
.+|+||+|...
T Consensus 314 IlV~NK~Dl~~ 324 (442)
T TIGR00450 314 ILVLNKIDLKI 324 (442)
T ss_pred EEEEECccCCC
Confidence 89999999853
No 40
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=157.79 Aligned_cols=189 Identities=18% Similarity=0.286 Sum_probs=131.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCC-CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKK-GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK 154 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~-~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~ 154 (495)
+..+.+++.+.+. ......... ..+..|+|+|.|||||||++|+|. |...+||+. .+.+||
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~-----------~aGTTR 214 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVIVSD-----------IAGTTR 214 (444)
T ss_pred HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEEecC-----------CCCccc
Confidence 4567788888874 221111112 256789999999999999999999 999999999 889999
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHH--HHH--HHHHHHHhcCCCEEEEEeeCCccccH
Q 011010 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAAL--FEE--MRQVSEATVNPDLVIFVMDSSIGQAA 230 (495)
Q Consensus 155 ~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l--~~e--l~~i~~~i~~~d~vllVvDa~~g~~~ 230 (495)
+-|..... .++..|++|||||........ .+. ..+...++..+|.+++|+||+.+...
T Consensus 215 D~I~~~~e------------------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~ 276 (444)
T COG1160 215 DSIDIEFE------------------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISE 276 (444)
T ss_pred cceeeeEE------------------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchH
Confidence 88765432 236789999999975432111 111 13344555589999999999976543
Q ss_pred HH--HHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcc---cccccCccchhhhccCCCCcHHHH
Q 011010 231 FD--QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD---EFEVFDVKPFVSRLLGMGDWSGFM 305 (495)
Q Consensus 231 ~~--~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~---~l~~f~p~~~vS~l~G~Gdi~~L~ 305 (495)
.+ .+....+......+|+||+|+............ +.++ .+-.|.|..++|+++|.| +..|+
T Consensus 277 qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k------------~~i~~~l~~l~~a~i~~iSA~~~~~-i~~l~ 343 (444)
T COG1160 277 QDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFK------------KKLRRKLPFLDFAPIVFISALTGQG-LDKLF 343 (444)
T ss_pred HHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHH------------HHHHHHhccccCCeEEEEEecCCCC-hHHHH
Confidence 33 444444444556999999998765322232222 1221 234577899999999999 99999
Q ss_pred HHHHHhCC
Q 011010 306 DKIHEVVP 313 (495)
Q Consensus 306 e~i~~~~~ 313 (495)
+.+.+...
T Consensus 344 ~~i~~~~~ 351 (444)
T COG1160 344 EAIKEIYE 351 (444)
T ss_pred HHHHHHHH
Confidence 99988763
No 41
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.63 E-value=8.7e-15 Score=148.74 Aligned_cols=195 Identities=19% Similarity=0.202 Sum_probs=120.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch---hH--HH--HHhhhhhcCcceeccCCC---CCh
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AF--DQ--LKQNATKAKIPFYGSYTE---SDP 168 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~---a~--dq--L~~~a~~~~i~~~~~~~~---~dp 168 (495)
+.+.+|.|+|+||+||||++.+|+.++.+.|++|++++.|++.+. ++ ++ +.......++.+....+. ...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 446789999999999999999999999999999999999987753 21 11 222222223322222221 122
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEE
Q 011010 169 VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 248 (495)
Q Consensus 169 ~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIl 248 (495)
.....+++..+...+||+|||||||+.+...+. +..+|.+++|.++..+.+.......+.+ . +..+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i----------~~~aD~i~vv~~~~~~~el~~~~~~l~~-~-~~ivv~ 179 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEVDI----------ANMADTFVVVTIPGTGDDLQGIKAGLME-I-ADIYVV 179 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH----------HHhhceEEEEecCCccHHHHHHHHHHhh-h-ccEEEE
Confidence 334566677777779999999999987544321 2256888888777665554443333433 2 258999
Q ss_pred eCccCCCCccchh-HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 249 TKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 249 TK~D~~~~~g~~l-s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
||+|......... ....... +..+ .++... ...|..++|+..|.| ++.|++++.+..
T Consensus 180 NK~Dl~~~~~~~~~~~~~~~~--l~~l--~~~~~~--~~~~v~~iSA~~g~G-i~~L~~~i~~~~ 237 (300)
T TIGR00750 180 NKADGEGATNVTIARLMLALA--LEEI--RRREDG--WRPPVLTTSAVEGRG-IDELWDAIEEHK 237 (300)
T ss_pred EcccccchhHHHHHHHHHHHH--Hhhc--cccccC--CCCCEEEEEccCCCC-HHHHHHHHHHHH
Confidence 9999864432110 0000000 0000 011111 112567899999999 999999998874
No 42
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.63 E-value=8.3e-15 Score=144.98 Aligned_cols=197 Identities=20% Similarity=0.257 Sum_probs=131.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc---hhH----HHHHhhhhhcCcceeccCCCCC--
Q 011010 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GAF----DQLKQNATKAKIPFYGSYTESD-- 167 (495)
Q Consensus 97 ~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~---~a~----dqL~~~a~~~~i~~~~~~~~~d-- 167 (495)
..|++.+|.|.|.|||||||++-+|...|.++|++|+|++.||-.| |++ -.+...+...++-+.+..+..-
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 4567889999999999999999999999999999999999998554 332 3334445455664444444332
Q ss_pred -hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEE
Q 011010 168 -PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 246 (495)
Q Consensus 168 -p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~v 246 (495)
......+++..+...+||+|||.|.|.-+.+.+. . .-+|.+++|+-+..|.+..-.-...-+-. +.+
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I-------~---~~aDt~~~v~~pg~GD~~Q~iK~GimEia--Di~ 194 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI-------A---NMADTFLVVMIPGAGDDLQGIKAGIMEIA--DII 194 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH-------h---hhcceEEEEecCCCCcHHHHHHhhhhhhh--hee
Confidence 3444667777777789999999999998766432 1 15699999988877765543323332222 689
Q ss_pred EEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 247 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 247 IlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|+||.|. .++...+.. ...-+.... +..++-....|.+-.|+..|.| +..|++++.++.
T Consensus 195 vINKaD~---~~A~~a~r~-l~~al~~~~--~~~~~~~W~ppv~~t~A~~g~G-i~~L~~ai~~h~ 253 (323)
T COG1703 195 VINKADR---KGAEKAARE-LRSALDLLR--EVWRENGWRPPVVTTSALEGEG-IDELWDAIEDHR 253 (323)
T ss_pred eEeccCh---hhHHHHHHH-HHHHHHhhc--ccccccCCCCceeEeeeccCCC-HHHHHHHHHHHH
Confidence 9999993 222111110 000000000 1122233344666789999999 999999999986
No 43
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.60 E-value=2.2e-15 Score=147.33 Aligned_cols=193 Identities=21% Similarity=0.244 Sum_probs=115.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc---chhH--H--HHHhhhhhcCcceeccCCCCChH--
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---AGAF--D--QLKQNATKAKIPFYGSYTESDPV-- 169 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R---~~a~--d--qL~~~a~~~~i~~~~~~~~~dp~-- 169 (495)
++..+|.|.|+||+|||||+..|+.+|.++|++|+|++.||-. .||+ | .+..++...++-+....+....-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 4567999999999999999999999999999999999999844 3442 3 33445555666555555544443
Q ss_pred -HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEE
Q 011010 170 -RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 248 (495)
Q Consensus 170 -~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIl 248 (495)
....+++..+...+||+|||.|.|.-+.+-+. ..-+|.+++|+-+..|.+....-...-+. .+++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I----------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI----------ADMADTVVLVLVPGLGDEIQAIKAGIMEI--ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH----------HTTSSEEEEEEESSTCCCCCTB-TTHHHH---SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH----------HHhcCeEEEEecCCCccHHHHHhhhhhhh--ccEEEE
Confidence 33566677777779999999999987765332 22679999999998776532111111111 268999
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 249 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 249 TK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
||.|.. + +-........-+.+ .... .-....|...+|+..|.| +++|++.+.++.
T Consensus 175 NKaD~~---g-A~~~~~~l~~~l~l---~~~~-~~~W~ppV~~tsA~~~~G-i~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRP---G-ADRTVRDLRSMLHL---LRER-EDGWRPPVLKTSALEGEG-IDELWEAIDEHR 229 (266)
T ss_dssp E--SHH---H-HHHHHHHHHHHHHH---CSTS-CTSB--EEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred eCCChH---H-HHHHHHHHHHHHhh---cccc-ccCCCCCEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 999942 1 11111100000000 0000 111224677789999999 999999998875
No 44
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.58 E-value=2.4e-15 Score=138.23 Aligned_cols=150 Identities=22% Similarity=0.153 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.|||||||++|+|. |.+.. |+. .+.+|.....-.. . ..
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~-v~n-----------~pG~Tv~~~~g~~--~----------------~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQK-VGN-----------WPGTTVEKKEGIF--K----------------LG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEE-EEE-----------STTSSSEEEEEEE--E----------------ET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCce-ecC-----------CCCCCeeeeeEEE--E----------------ec
Confidence 58999999999999999999 98855 454 4555543221111 1 12
Q ss_pred CCcEEEEeCCCCCcchHH-HHHHH-HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccch
Q 011010 183 NCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~-l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ 260 (495)
+.++.||||||.+..... ..+.+ .+.... ..+|.+++|+||+.-.........+.+.-.+..+++||+|...+.|..
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~-~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLS-EKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHH-TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhh-cCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCE
Confidence 578999999996443211 11222 222222 389999999999875544444555555444579999999997766543
Q ss_pred hH---HHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHH
Q 011010 261 LS---AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKI 308 (495)
Q Consensus 261 ls---~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i 308 (495)
+. .....++ |..++|+..|.| +++|.++|
T Consensus 125 id~~~Ls~~Lg~------------------pvi~~sa~~~~g-~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERLGV------------------PVIPVSARTGEG-IDELKDAI 156 (156)
T ss_dssp E-HHHHHHHHTS-------------------EEEEBTTTTBT-HHHHHHHH
T ss_pred ECHHHHHHHhCC------------------CEEEEEeCCCcC-HHHHHhhC
Confidence 32 1222233 456777888888 77777654
No 45
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.57 E-value=4e-14 Score=127.81 Aligned_cols=162 Identities=25% Similarity=0.300 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
..+|+++|++||||||++++++ |.+++.+..++. +++....... .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~-----------~~~~~~~~~~--~---------------- 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQ-----------TTRNRIRGIY--T---------------- 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCC-----------ceeceEEEEE--E----------------
Confidence 4579999999999999999999 888887766321 1221111110 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHhccCCceEEEEeCccCCCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
..+++++++||||...........+ .........+|.+++|+|++.. +........+.....+..+|+||+|.....
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH
Confidence 1257899999999865443322222 1222334478999999999864 222233333433223458999999986332
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....... +.+....++.+...+|+..+.| ++.|++.+.+.
T Consensus 128 ~~~~~~~-------------~~~~~~~~~~~~~~~s~~~~~~-~~~l~~~l~~~ 167 (168)
T cd04163 128 EDLLPLL-------------EKLKELGPFAEIFPISALKGEN-VDELLEEIVKY 167 (168)
T ss_pred HHHHHHH-------------HHHHhccCCCceEEEEeccCCC-hHHHHHHHHhh
Confidence 2222222 1222223345667789999999 99999988764
No 46
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=1.1e-14 Score=152.76 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
-|+|||+||||||||+|+|+ +.++ .|+. .+++|+..+....... .
T Consensus 161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~-----------~p~TT~~p~~Giv~~~-----------------~ 205 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVAD-----------YPFTTLVPNLGVVRVD-----------------D 205 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh------CCcc-cccC-----------CCCCccCcEEEEEEeC-----------------C
Confidence 48999999999999999999 7776 6676 6777776553322111 1
Q ss_pred CCcEEEEeCCCCCcchH---HHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHH----HHHHHHhcc-----CCceEEEE
Q 011010 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAF----DQAQAFKQS-----VSVGAVIV 248 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~---~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~----~~~~~f~~~-----~~~~~vIl 248 (495)
...++|+||||.+.... .+.. ++...+..+|.+++|+|++.. .+.. .....+... -.+..+|+
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~---~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGI---RFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHH---HHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 23589999999864321 1222 233445588999999998721 1111 122222221 13468999
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHH
Q 011010 249 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPEL 320 (495)
Q Consensus 249 TK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~ 320 (495)
||+|..... .....+. .+ ..+....+..++|++.+.| ++.|++.+.+.++ ++..++.
T Consensus 283 NKiDl~~~~-el~~~l~-------------~l~~~~~~~~~Vi~ISA~tg~G-IdeLl~~I~~~L~~~~~~~~~~~~td~ 347 (390)
T PRK12298 283 NKIDLLDEE-EAEERAK-------------AIVEALGWEGPVYLISAASGLG-VKELCWDLMTFIEENPREEAEEAEAPE 347 (390)
T ss_pred eCCccCChH-HHHHHHH-------------HHHHHhCCCCCEEEEECCCCcC-HHHHHHHHHHHhhhCcccCCcccccCc
Confidence 999985432 1111111 11 1111112557899999999 9999999988774 3455566
Q ss_pred hhccccchhcHHHHH
Q 011010 321 LQKLSEGNFTLRIMY 335 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~ 335 (495)
.+++...|+++|.+.
T Consensus 348 ~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 348 KVEFMWDDYHREQLE 362 (390)
T ss_pred cHHHHHHHHHHHHhh
Confidence 777777777777654
No 47
>PRK13768 GTPase; Provisional
Probab=99.54 E-value=1.4e-13 Score=136.67 Aligned_cols=207 Identities=19% Similarity=0.200 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------H-HH--HHhhhhhcCc-ceec-cCCCCChH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------F-DQ--LKQNATKAKI-PFYG-SYTESDPV 169 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------~-dq--L~~~a~~~~i-~~~~-~~~~~dp~ 169 (495)
.+++++|++||||||++..++.++..+|++|++|+.|+..... + +. +.......++ |-.. .....-..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 5789999999999999999999999999999999999843210 0 10 1100001111 0000 00000000
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcch--HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH--HHHH------hc
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ--AQAF------KQ 239 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~--~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~--~~~f------~~ 239 (495)
.........+...+.|++|+||||+.... ......+.+..... .++.+++|+|+..+....+. ...+ ..
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~-~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~ 161 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGS-SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL 161 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhc-CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc
Confidence 11122333444456799999999975432 12222222222222 28999999999755433221 1111 12
Q ss_pred cCCceEEEEeCccCCCCccc--hhHHHHhcCCCeEEec---------------cCCCcccccccCccchhhhccCCCCcH
Q 011010 240 SVSVGAVIVTKMDGHAKGGG--ALSAVAATKSPVIFIG---------------TGEHMDEFEVFDVKPFVSRLLGMGDWS 302 (495)
Q Consensus 240 ~~~~~~vIlTK~D~~~~~g~--~ls~~~~~~~PI~fi~---------------~Ge~i~~l~~f~p~~~vS~l~G~Gdi~ 302 (495)
..+ ..+|+||+|....... ...... .|-.+.. ..+.++++.++.+..++|+..+.| ++
T Consensus 162 ~~~-~i~v~nK~D~~~~~~~~~~~~~l~---~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g-l~ 236 (253)
T PRK13768 162 GLP-QIPVLNKADLLSEEELERILKWLE---DPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEG-FD 236 (253)
T ss_pred CCC-EEEEEEhHhhcCchhHHHHHHHHh---CHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcC-HH
Confidence 233 5899999998655321 111111 0000000 001122334455667899999999 99
Q ss_pred HHHHHHHHhCCC
Q 011010 303 GFMDKIHEVVPM 314 (495)
Q Consensus 303 ~L~e~i~~~~~~ 314 (495)
.|++++.+.++.
T Consensus 237 ~L~~~I~~~l~~ 248 (253)
T PRK13768 237 ELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHcCC
Confidence 999999998863
No 48
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.53 E-value=6e-14 Score=131.39 Aligned_cols=180 Identities=19% Similarity=0.215 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC-CC--hHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SD--PVRIAVEGVET 178 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~-~d--p~~ia~~~l~~ 178 (495)
..|-+.|+|||||||++-++...|+++ +++++|..|.|.-...+.|+.. .+++..+..+. .. +......++++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 679999999999999999999999987 9999999999987666666653 56666666665 33 67777888888
Q ss_pred HhhcC--CcEEEEeCCCCC-cchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCC
Q 011010 179 FKKEN--CDLIIVDTSGRH-KQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~--~dvviIDTaG~~-~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+.... .|++||.+.|-+ .+.+ -.+ ..+..++|+|.+.|.+...-. .---..-..+|+||.|..+
T Consensus 90 l~~~~~~~Dll~iEs~GNL~~~~s----------p~L-~d~~~v~VidvteGe~~P~K~--gP~i~~aDllVInK~DLa~ 156 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNLVCPFS----------PDL-GDHLRVVVIDVTEGEDIPRKG--GPGIFKADLLVINKTDLAP 156 (202)
T ss_pred HhhcCCcCCEEEEecCcceecccC----------cch-hhceEEEEEECCCCCCCcccC--CCceeEeeEEEEehHHhHH
Confidence 76543 599999999932 1111 011 334789999999887654310 0000113689999999988
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..|.-++... +....+.+-.|.+++|..+|.| ++.+++++...
T Consensus 157 ~v~~dlevm~------------~da~~~np~~~ii~~n~ktg~G-~~~~~~~i~~~ 199 (202)
T COG0378 157 YVGADLEVMA------------RDAKEVNPEAPIIFTNLKTGEG-LDEWLRFIEPQ 199 (202)
T ss_pred HhCccHHHHH------------HHHHHhCCCCCEEEEeCCCCcC-HHHHHHHHHhh
Confidence 8887777766 5666677888889999999999 99999988764
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=3.9e-13 Score=142.82 Aligned_cols=159 Identities=23% Similarity=0.325 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+++|.|||||||++|+|. +.+.++++. .+..++........ ..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~t~d~~~~~~~------------------~~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVSD-----------TPGVTRDRKYGDAE------------------WG 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh------CCCcceecC-----------CCCcccCceEEEEE------------------EC
Confidence 38999999999999999999 888888776 34444443322111 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g~ 259 (495)
+..+.|+||||.......+.+++ .....++..+|.+++|+|+..+.... ..+..+.+...+..+|+||+|.......
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~ 125 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV 125 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc
Confidence 56789999999864444444444 33445666899999999998764433 2344444433446899999998543221
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
... .. .+ .+.+..++|+..|.| +..|++.+.+.+++.
T Consensus 126 ~~~-~~----------------~l-g~~~~~~vSa~~g~g-v~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 126 AAE-FY----------------SL-GFGEPIPISAEHGRG-IGDLLDAILELLPEE 162 (429)
T ss_pred HHH-HH----------------hc-CCCCeEEEeCCcCCC-hHHHHHHHHHhcCcc
Confidence 111 11 11 123447889999999 999999999988643
No 50
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=1.4e-12 Score=125.54 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC---CChHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGV 176 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~---~dp~~ia~~~l 176 (495)
.+.+|+|+|++||||||++++++..+.. +.+|+++..|++...+.++++... .++.....+ ........+++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~~~~----~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLRKYG----APAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHHHcC----CcEEEEcCCCcccCChHHHHHHH
Confidence 3678999999999999999999987653 679999999987654555565432 222221111 01111223555
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
..+...++|+|||+|.|.......+ .. ..+..+.|+|+..+..... ....+. ....+++||+|...
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~~~---------~~-~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPADF---------DL-GEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADLAE 162 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCccc---------cc-ccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHccc
Confidence 5554457899999999943221110 12 4566778999875543221 112221 23589999999864
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.....+.... +.+..+.++.|...+|++.|.| +..|++++.+..
T Consensus 163 ~~~~~~~~~~------------~~l~~~~~~~~i~~~Sa~~g~g-v~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMK------------ADAKKINPEAEIILMSLKTGEG-LDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 3211111111 1222334556778899999999 999999987753
No 51
>PRK11058 GTPase HflX; Provisional
Probab=99.45 E-value=1.1e-12 Score=139.26 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCC-CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKG-KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK 154 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~-~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~ 154 (495)
+..+..+|.++..........+.+ ....|+|+|.|||||||++|+|. +.++. ++. ...+|.
T Consensus 171 i~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~-----------~~~tTl 232 (426)
T PRK11058 171 IVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRIT------EARVY-AAD-----------QLFATL 232 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHh------CCcee-ecc-----------CCCCCc
Confidence 445556666665433222111111 11369999999999999999999 87777 433 222332
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCc-chHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HH
Q 011010 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK-QEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AF 231 (495)
Q Consensus 155 ~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~-~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~ 231 (495)
....-..... ....++|+||||+.. ....+.+.+.........+|.+++|+|++.... ..
T Consensus 233 d~~~~~i~l~-----------------~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 233 DPTLRRIDVA-----------------DVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI 295 (426)
T ss_pred CCceEEEEeC-----------------CCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH
Confidence 2211000000 123679999999832 234555555545555558999999999986432 11
Q ss_pred ----HHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHH
Q 011010 232 ----DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDK 307 (495)
Q Consensus 232 ----~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~ 307 (495)
.....+.....+..+|+||+|............ . .......++|+..|.| ++.|+++
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~-----------------~-~~~~~~v~ISAktG~G-IdeL~e~ 356 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRD-----------------E-ENKPIRVWLSAQTGAG-IPLLFQA 356 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHH-----------------h-cCCCceEEEeCCCCCC-HHHHHHH
Confidence 112222222234689999999853311111100 0 0011125689999999 9999999
Q ss_pred HHHhCC
Q 011010 308 IHEVVP 313 (495)
Q Consensus 308 i~~~~~ 313 (495)
+.+.+.
T Consensus 357 I~~~l~ 362 (426)
T PRK11058 357 LTERLS 362 (426)
T ss_pred HHHHhh
Confidence 988874
No 52
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.44 E-value=1.5e-12 Score=118.94 Aligned_cols=136 Identities=22% Similarity=0.283 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHH-------HHhhhhhcCcceeccCCC---CChHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-------LKQNATKAKIPFYGSYTE---SDPVRIA 172 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dq-------L~~~a~~~~i~~~~~~~~---~dp~~ia 172 (495)
++.++|++||||||++.+++.++.+.|+++.++++|+.++..... +.......++.+...... ..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 378999999999999999999999999999999999855432111 111111112211111111 2233445
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH--HHHHhccCCceEEEEeC
Q 011010 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTK 250 (495)
Q Consensus 173 ~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~--~~~f~~~~~~~~vIlTK 250 (495)
.+.++.++..+||++||||||+.+... ..+..+|.+++|+.+..+ ++... ...|.. -..+++||
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~----------~~~~~Ad~~ivv~tpe~~-D~y~~~k~~~~~~---~~~~~~~k 146 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEV----------DIASMADTTVVVMAPGAG-DDIQAIKAGIMEI---ADIVVVNK 146 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhh----------hHHHhCCEEEEEECCCch-hHHHHhhhhHhhh---cCEEEEeC
Confidence 556666656689999999999864321 122268999999988733 22222 223332 26899999
Q ss_pred cc
Q 011010 251 MD 252 (495)
Q Consensus 251 ~D 252 (495)
+|
T Consensus 147 ~~ 148 (148)
T cd03114 147 AD 148 (148)
T ss_pred CC
Confidence 98
No 53
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=2.1e-12 Score=116.34 Aligned_cols=153 Identities=23% Similarity=0.317 Sum_probs=93.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCC
Q 011010 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (495)
Q Consensus 105 ~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~ 184 (495)
+++|.+||||||++++|+ +.+...++.. +.+++........ ..++
T Consensus 1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~-----------~~~t~~~~~~~~~------------------~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDT-----------PGVTRDRIYGEAE------------------WGGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHh------CCcEEeecCC-----------CCceeCceeEEEE------------------ECCe
Confidence 478999999999999999 7766665552 2222211110110 1257
Q ss_pred cEEEEeCCCCCcchHHHHHHHH-HHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 185 DLIIVDTSGRHKQEAALFEEMR-QVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 185 dvviIDTaG~~~~~~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
.+.++||||.......+...+. ........+|.+++|+|+..+.. .......+.....+..+|+||+|....... .
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~ 124 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-A 124 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-H
Confidence 8999999998654433333332 22333447899999999975422 222233333323446999999998654211 1
Q ss_pred HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
... ..+. ..+...+|+..|.| ++.+++++.+.
T Consensus 125 ~~~----------------~~~~-~~~~~~~Sa~~~~g-v~~l~~~l~~~ 156 (157)
T cd01894 125 AEF----------------YSLG-FGEPIPISAEHGRG-IGDLLDAILEL 156 (157)
T ss_pred HHH----------------HhcC-CCCeEEEecccCCC-HHHHHHHHHhh
Confidence 111 1111 12346799999999 99999988764
No 54
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.42 E-value=3.3e-12 Score=114.87 Aligned_cols=153 Identities=21% Similarity=0.190 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++.+. +.+.+.++. .+.++..-..... ...
T Consensus 3 ~i~l~G~~~~GKstli~~l~------~~~~~~~~~-----------~~~~~~~~~~~~~------------------~~~ 47 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA------GRDRAIVSD-----------IAGTTRDVIEESI------------------DIG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCceEeccC-----------CCCCccceEEEEE------------------EeC
Confidence 58999999999999999998 766555544 1112211111000 012
Q ss_pred CCcEEEEeCCCCCcchHHHHH-HHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 183 NCDLIIVDTSGRHKQEAALFE-EMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~-el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
++++.++||||.......... .+.........+|.+++|+|++......+..........+..+|+||+|.......
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc--
Confidence 567899999997544332221 12333344458899999999985433322111111222345999999998644211
Q ss_pred HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......+...+|+..|.| ++.|++++.+.+
T Consensus 126 -------------------~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 156 (157)
T cd04164 126 -------------------LSLLAGKPIIAISAKTGEG-LDELKEALLELA 156 (157)
T ss_pred -------------------ccccCCCceEEEECCCCCC-HHHHHHHHHHhh
Confidence 1122234567789999999 999999987754
No 55
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=2e-12 Score=139.31 Aligned_cols=159 Identities=23% Similarity=0.317 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.|||||||++|+|+ |.+.++++. .+..++..+..... .
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~~-----------~~gvT~d~~~~~~~------------------~ 83 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRIL------GRREAVVED-----------VPGVTRDRVSYDAE------------------W 83 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHh------CcCcccccC-----------CCCCCEeeEEEEEE------------------E
Confidence 469999999999999999999 777766665 33344433322111 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHH-HHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMR-QVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
.+..+.|+||||.......+...+. ....++..+|.++||+|++.+.. ....+..+.....+..+|+||+|......
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~ 163 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA 163 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch
Confidence 2567899999997643333333332 23344558999999999986533 23334444443345699999999753211
Q ss_pred chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.. .... .+....| .++|+..|.| +..|++++.+.+++
T Consensus 164 ~~-~~~~----------------~~g~~~~-~~iSA~~g~g-i~eL~~~i~~~l~~ 200 (472)
T PRK03003 164 DA-AALW----------------SLGLGEP-HPVSALHGRG-VGDLLDAVLAALPE 200 (472)
T ss_pred hh-HHHH----------------hcCCCCe-EEEEcCCCCC-cHHHHHHHHhhccc
Confidence 11 0010 1111122 5799999999 99999999888754
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=6.4e-12 Score=133.88 Aligned_cols=156 Identities=22% Similarity=0.329 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+|+|.|||||||++|+|+ |.+.++++. .+.+++........ ..
T Consensus 3 ~I~ivG~~~vGKStL~n~l~------~~~~~~v~~-----------~~~~t~d~~~~~~~------------------~~ 47 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLT------GKRDAIVAD-----------TPGVTRDRIYGEAE------------------WL 47 (435)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC-----------CCCCcccceEEEEE------------------EC
Confidence 69999999999999999999 888887765 23333332211111 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHH-HHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQ-VSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~-i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g~ 259 (495)
+.++.|+||||.......+...+.. ...++..+|.+++|+|+..+.... ..+..+.....+..+|+||+|.......
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~ 127 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEAD 127 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhh
Confidence 5789999999986533334444432 334555899999999998654332 2334444333446899999996432111
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... . .+. +.....+|+..|.| +..|++.+.+..
T Consensus 128 ~~~~-~----------------~lg-~~~~~~iSa~~g~g-v~~l~~~I~~~~ 161 (435)
T PRK00093 128 AYEF-Y----------------SLG-LGEPYPISAEHGRG-IGDLLDAILEEL 161 (435)
T ss_pred HHHH-H----------------hcC-CCCCEEEEeeCCCC-HHHHHHHHHhhC
Confidence 1111 1 111 11235689999999 999999987744
No 57
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.38 E-value=2.8e-12 Score=117.74 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=86.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+|+|++||||||++++|. +.++ .|+. .+.++.... ++... ..+
T Consensus 3 v~ivG~~~~GKStl~~~l~------~~~~-~v~~-----------~~~~t~~~~--~~~~~----------------~~~ 46 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKP-KIAD-----------YPFTTLVPN--LGVVR----------------VDD 46 (170)
T ss_pred eEEECCCCCCHHHHHHHHh------cCCc-cccC-----------CCccccCCc--ceEEE----------------cCC
Confidence 8999999999999999998 5544 2332 111221110 00000 013
Q ss_pred C-cEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-cc--H-HHHHHHHhcc-----CCceEEEEeCccC
Q 011010 184 C-DLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QA--A-FDQAQAFKQS-----VSVGAVIVTKMDG 253 (495)
Q Consensus 184 ~-dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~--~-~~~~~~f~~~-----~~~~~vIlTK~D~ 253 (495)
+ .+.|+||||..................+..+|.+++|+|++.. .. . ....+.+... ..+..+|+||+|.
T Consensus 47 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 3 7899999997421111000012222333368999999999865 11 1 1122222211 1335899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..+.. ...... +..... ...+...+|+..|.| +..+++.+.++
T Consensus 127 ~~~~~-~~~~~~------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 169 (170)
T cd01898 127 LDEEE-LFELLK------------ELLKEL-WGKPVFPISALTGEG-LDELLRKLAEL 169 (170)
T ss_pred CCchh-hHHHHH------------HHHhhC-CCCCEEEEecCCCCC-HHHHHHHHHhh
Confidence 54422 111111 001111 123456789999999 99999988765
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=5.7e-12 Score=142.16 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.|||||||++|+|. |.+.++|+. .+.+|+..+..... .
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~-----------~pGvT~d~~~~~~~------------------~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED-----------TPGVTRDRVSYDAE------------------W 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCeeEEEEEEEEE------------------E
Confidence 579999999999999999999 888888876 44455544322211 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
.+..+.++||||.......+...+ .....++..+|.++||+|++.+....+ .+..+...-.+..+|+||+|......
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 256789999999753222233333 333445558999999999986543332 34444444445699999999754321
Q ss_pred chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.. .... .+. +....++|+..|.| +..|++++.+.++.
T Consensus 401 ~~-~~~~----------------~lg-~~~~~~iSA~~g~G-I~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 DA-AEFW----------------KLG-LGEPYPISAMHGRG-VGDLLDEALDSLKV 437 (712)
T ss_pred hH-HHHH----------------HcC-CCCeEEEECCCCCC-chHHHHHHHHhccc
Confidence 11 1111 011 11225789999999 99999999988864
No 59
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.37 E-value=1.7e-11 Score=117.88 Aligned_cols=174 Identities=22% Similarity=0.213 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccC---------------CcchhHHHHHhhhhh-cC---------
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT---------------FRAGAFDQLKQNATK-AK--------- 156 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~---------------~R~~a~dqL~~~a~~-~~--------- 156 (495)
+|+|+|..||||||+++.|+..+.++ |++|++|++|+ |-.+..+.++..+.. .+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 59999999999999999988887765 59999999997 111223333332221 01
Q ss_pred -----------------cceeccCC-------CCChH-HHHHHHHHHHhhcCCcEEEEeC-CCCCcchHHHHHHHHHHHH
Q 011010 157 -----------------IPFYGSYT-------ESDPV-RIAVEGVETFKKENCDLIIVDT-SGRHKQEAALFEEMRQVSE 210 (495)
Q Consensus 157 -----------------i~~~~~~~-------~~dp~-~ia~~~l~~~~~~~~dvviIDT-aG~~~~~~~l~~el~~i~~ 210 (495)
+......+ ...|+ .++++-++++..+.+++||||| ||..|... .
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgR----------g 151 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGR----------G 151 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhcc----------c
Confidence 11110000 11233 3356677777777899999999 89866442 2
Q ss_pred HhcCCCEEEEEeeCCccccHHHHHHHHh---cc--CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccc
Q 011010 211 ATVNPDLVIFVMDSSIGQAAFDQAQAFK---QS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV 285 (495)
Q Consensus 211 ~i~~~d~vllVvDa~~g~~~~~~~~~f~---~~--~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~ 285 (495)
....+|.++.|+|++.. ....++.+. +. ++...+|+||+|.. ...........+.++ -..-|
T Consensus 152 ~~~~vD~vivVvDpS~~--sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~v---------lg~iP 218 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK--SLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEV---------LGVIP 218 (255)
T ss_pred cccCCCEEEEEeCCcHH--HHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeE---------EEEcc
Confidence 23488999999999842 222222222 22 24469999999976 111222222223222 23346
Q ss_pred cCccchhhhccCCC
Q 011010 286 FDVKPFVSRLLGMG 299 (495)
Q Consensus 286 f~p~~~vS~l~G~G 299 (495)
++|..+-.-+.|..
T Consensus 219 ~d~~v~~~dl~G~p 232 (255)
T COG3640 219 YDPEVVEADLKGEP 232 (255)
T ss_pred CCHHHHhccccCCc
Confidence 66666555555544
No 60
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.36 E-value=9.5e-12 Score=118.61 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.+. +.++.. ...+ ..+.... ...... .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~------~~~~~~-~~~~-----------~~t~~~~-~~~~~~----------------~ 86 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT------GADVYA-EDQL-----------FATLDPT-TRRLRL----------------P 86 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh------cchhcc-CCcc-----------ceeccce-eEEEEe----------------c
Confidence 479999999999999999999 543211 1100 0010000 000000 0
Q ss_pred cCCcEEEEeCCCCCcc-hHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQ-EAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~-~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
..+++.|+||||.... .....+...........+|.+++|+|++....... ....+.. ...+..+|+||+|..
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 1348899999997432 22222223333333348899999999985432211 1222222 123469999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..... . . .. .....+..++|+..|.| +..+++++.+.
T Consensus 167 ~~~~~--~--~-------------~~--~~~~~~~~~~Sa~~~~g-i~~l~~~L~~~ 203 (204)
T cd01878 167 DDEEL--E--E-------------RL--EAGRPDAVFISAKTGEG-LDELLEAIEEL 203 (204)
T ss_pred ChHHH--H--H-------------Hh--hcCCCceEEEEcCCCCC-HHHHHHHHHhh
Confidence 54221 1 0 00 11223457899999999 99999988764
No 61
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=1.2e-11 Score=133.32 Aligned_cols=166 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+..|+|+|.|||||||++|+|. +.+..+++. .+.+++.-+.....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~-----------~~gtT~d~~~~~~~----------------- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD-----------VAGTTVDPVDSLIE----------------- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CCCccCCcceEEEE-----------------
Confidence 35689999999999999999999 777666665 44444433321111
Q ss_pred hhcCCcEEEEeCCCCCcch-----HHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~-----~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D 252 (495)
..+..+.|+||||..... .+....++. ..++..+|.+++|+|++.+... ...+........+..+|+||+|
T Consensus 256 -~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~-~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~D 333 (472)
T PRK03003 256 -LGGKTWRFVDTAGLRRRVKQASGHEYYASLRT-HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWD 333 (472)
T ss_pred -ECCEEEEEEECCCccccccccchHHHHHHHHH-HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 125678899999963211 122222221 2334489999999999865432 2233333333334699999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... ......... +.+. ...+.|..++|++.|.| ++.|++.+.+.++
T Consensus 334 l~~~~~-~~~~~~~i~---------~~l~-~~~~~~~~~~SAk~g~g-v~~lf~~i~~~~~ 382 (472)
T PRK03003 334 LVDEDR-RYYLEREID---------RELA-QVPWAPRVNISAKTGRA-VDKLVPALETALE 382 (472)
T ss_pred cCChhH-HHHHHHHHH---------Hhcc-cCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 864211 000100000 1111 11345677899999999 9999999988763
No 62
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=1.8e-11 Score=111.63 Aligned_cols=165 Identities=20% Similarity=0.265 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.+|+||||+++.|. +....++... +.+++....... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~------~~~~~~~~~~-----------~~~~~~~~~~~~------------------~ 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL------GEERVIVSDI-----------AGTTRDSIDVPF------------------E 46 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CccceeccCC-----------CCCccCceeeEE------------------E
Confidence 3469999999999999999998 5554444331 111211111110 0
Q ss_pred hcCCcEEEEeCCCCCcch--HHHHHHH--HHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQE--AALFEEM--RQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~--~~l~~el--~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
..+.++.++||||..... ....+.. .........+|.+++|+|+..... .............+..+|+||+|..
T Consensus 47 ~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 47 YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 125678999999974321 1111111 112233347899999999875432 2222232222223458999999986
Q ss_pred CCccchhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
........... ... +.+.. ....+..++|+..|.| +..+++.+...
T Consensus 127 ~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~Sa~~~~~-i~~~~~~l~~~ 173 (174)
T cd01895 127 EKDSKTMKEFKKEIR---------RKLPF-LDYAPIVFISALTGQG-VDKLFDAIDEV 173 (174)
T ss_pred CccHHHHHHHHHHHH---------hhccc-ccCCceEEEeccCCCC-HHHHHHHHHHh
Confidence 54211111111 000 11110 1234667789999999 99999888654
No 63
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.34 E-value=1.9e-11 Score=113.55 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=81.9
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 104 I~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
|+++ +.+|+||||++.+||.++++.|++|++|+.|++++.....+. ...........+......
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcC
Confidence 4454 667999999999999999999999999999998874321110 011122233334444346
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHhc-cCCceEEEEeCccC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~~-~~~~~~vIlTK~D~ 253 (495)
.||+||||||+..... .. .+.... .+|.+++|+.+... .+.......+.+ ..++.++|+|+.+.
T Consensus 67 ~yD~VIiD~pp~~~~~--~~----~~~~~~-~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGDE--HL----TLAQSL-PIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcHH--HH----HHHhcc-CCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 8999999999975321 11 011112 67999999987632 122223333332 24567999999975
No 64
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.34 E-value=1.9e-11 Score=122.76 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=117.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC----CChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE----SDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~----~dp~~ia~~~l 176 (495)
..++.|+|+||||||||++++...+... .+++++..|..-....+.++ ..++|.....++ .+ .....+++
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI~----~~g~pvvqi~tG~~Chl~-a~mv~~Al 177 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIR----ATGTPAIQVNTGKGCHLD-AQMIADAA 177 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHHH----hcCCcEEEecCCCCCcCc-HHHHHHHH
Confidence 4579999999999999999999988764 58999999976554333333 234444443331 22 33456677
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHhccCCceEEEEeCccCCC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
..+...+.|++||++.|.......+ .+ ..+..+.|++...+.+ ....-..|.. ...+|+||+|+..
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f---------dl-ge~~~v~vlsV~eg~dkplKyp~~f~~---ADIVVLNKiDLl~ 244 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF---------DL-GEKHKVAVLSVTEGEDKPLKYPHMFAA---ASLMLLNKVDLLP 244 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc---------ch-hhceeEEEEECccccccchhccchhhc---CcEEEEEhHHcCc
Confidence 7777778999999999963222111 11 2233457777776643 2222223322 2689999999865
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....-+.... +.+..+.++.+.+.+|+..|.| ++.|++++.+.
T Consensus 245 ~~~~dle~~~------------~~lr~lnp~a~I~~vSA~tGeG-ld~L~~~L~~~ 287 (290)
T PRK10463 245 YLNFDVEKCI------------ACAREVNPEIEIILISATSGEG-MDQWLNWLETQ 287 (290)
T ss_pred ccHHHHHHHH------------HHHHhhCCCCcEEEEECCCCCC-HHHHHHHHHHh
Confidence 3222222222 3455667788888999999999 99999999764
No 65
>PHA02518 ParA-like protein; Provisional
Probab=99.33 E-value=2.3e-11 Score=116.19 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=83.1
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhh-hcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT-KAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 103 vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~-~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+|+|++.- ||||||++.+||.+|+++|++|++|++|+++..+. ++..... ...++... .. ....+.+..+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~-~~~~~~~~~~~i~~~~---~~---~~~~~~l~~~- 73 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD-WAEAREEGEPLIPVVR---MG---KSIRADLPKV- 73 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH-HHHhcccCCCCCchhh---cc---HHHHHHHHHH-
Confidence 67888666 89999999999999999999999999999886542 2211111 01122111 10 1123334444
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--c---HHHHHH---HHhccCCceEEEEeCcc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--A---AFDQAQ---AFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~---~~~~~~---~f~~~~~~~~vIlTK~D 252 (495)
...||+|||||||.... + ...++..+|.++++++++... . ..+... .+....+..++|.|+.+
T Consensus 74 ~~~~d~viiD~p~~~~~---~------~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 74 ASGYDYVVVDGAPQDSE---L------ARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred hccCCEEEEeCCCCccH---H------HHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccC
Confidence 35899999999997421 1 122333689999999987421 1 111112 22233455678889876
Q ss_pred CC
Q 011010 253 GH 254 (495)
Q Consensus 253 ~~ 254 (495)
..
T Consensus 145 ~~ 146 (211)
T PHA02518 145 KN 146 (211)
T ss_pred Cc
Confidence 54
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=3.5e-11 Score=127.87 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=110.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcC
Q 011010 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (495)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~ 156 (495)
..+.+++.+.+....... ........++++|.+||||||+++.|. |.+..+++. .+.+++..
T Consensus 149 ~~ll~~i~~~l~~~~~~~-~~~~~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~~-----------~~gtt~~~ 210 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEE-EEEDGPIKIAIIGRPNVGKSTLVNALL------GEERVIVSD-----------IAGTTRDS 210 (429)
T ss_pred HHHHHHHHHhcCcccccc-cccCCceEEEEECCCCCCHHHHHHHHH------CCCeeecCC-----------CCCceECc
Confidence 445566666664432211 112234579999999999999999999 877766665 33444433
Q ss_pred cceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcch--HHHHHHH--HHHHHHhcCCCEEEEEeeCCccccHHH
Q 011010 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEM--RQVSEATVNPDLVIFVMDSSIGQAAFD 232 (495)
Q Consensus 157 i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~--~~l~~el--~~i~~~i~~~d~vllVvDa~~g~~~~~ 232 (495)
+..... ..+..+.|+||||..... ....+.. .+....+..+|.+++|+|++.+....+
T Consensus 211 ~~~~~~------------------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~ 272 (429)
T TIGR03594 211 IDIPFE------------------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD 272 (429)
T ss_pred EeEEEE------------------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 321111 124578999999964321 1111111 222334458999999999986544322
Q ss_pred --HHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 233 --QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 233 --~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
......+...+..+|+||+|................ +.+. ...+.|..++|+..|.| +..+++.+.+
T Consensus 273 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---------~~~~-~~~~~~vi~~SA~~g~~-v~~l~~~i~~ 341 (429)
T TIGR03594 273 LRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR---------RKLP-FLDFAPIVFISALTGQG-VDKLLDAIDE 341 (429)
T ss_pred HHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH---------Hhcc-cCCCCceEEEeCCCCCC-HHHHHHHHHH
Confidence 223222222346899999998622111111111000 1111 12345778899999999 9999999887
Q ss_pred hC
Q 011010 311 VV 312 (495)
Q Consensus 311 ~~ 312 (495)
.+
T Consensus 342 ~~ 343 (429)
T TIGR03594 342 VY 343 (429)
T ss_pred HH
Confidence 65
No 67
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.32 E-value=2.1e-11 Score=113.35 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=95.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+||||||++++|.......++...+.+....+... ......+....... ....+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------------------~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE--ERERGITIKSGVAT------------------FEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH--HHHcCCCeecceEE------------------EeeCC
Confidence 89999999999999999995433323333322211111111 01111111100000 00125
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCccCCCCcc--c
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG--G 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D~~~~~g--~ 259 (495)
.+++|+||||....... ....+..+|.+++|+|+..+... ............+..+|+||+|...... .
T Consensus 62 ~~~~liDtpG~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~ 134 (189)
T cd00881 62 RRVNFIDTPGHEDFSSE-------VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEE 134 (189)
T ss_pred EEEEEEeCCCcHHHHHH-------HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHH
Confidence 68999999997532221 12222378999999999865432 2223333322334599999999864211 1
Q ss_pred hhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 260 ALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 260 ~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... ..+......+.+..... ....+..++|+..|.| ++.+++++...++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~g~g-i~~l~~~l~~~l~ 187 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRN-GLLVPIVPGSALTGIG-VEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHHccccccchhhhhccc-CCcceEEEEecccCcC-HHHHHHHHHhhCC
Confidence 111111 11110000000000000 1245667899999999 9999999988875
No 68
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=4e-11 Score=120.30 Aligned_cols=119 Identities=20% Similarity=0.299 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+|+++|.|||||||++++|. +.++-|.+ .++||+. |. .+ ++..
T Consensus 169 pTivVaG~PNVGKSSlv~~lT------~AkpEvA~------------YPFTTK~-i~-vG----------------hfe~ 212 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLT------TAKPEVAP------------YPFTTKG-IH-VG----------------HFER 212 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHh------cCCCccCC------------CCccccc-ee-Ee----------------eeec
Confidence 479999999999999999999 77776655 3555542 11 11 1112
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH--HHHHHHhcCCCEEEEEeeCC--ccccHHHHHHHHhcc---C-CceEEEEeCccC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM--RQVSEATVNPDLVIFVMDSS--IGQAAFDQAQAFKQS---V-SVGAVIVTKMDG 253 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el--~~i~~~i~~~d~vllVvDa~--~g~~~~~~~~~f~~~---~-~~~~vIlTK~D~ 253 (495)
....+-+|||||.+....+-+.++ +.+.+.-+-.+.|+|++|++ +|.....|...|++- . .+..+|+||+|.
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 355789999999876554433333 44443334578999999998 455666666555442 2 356999999997
Q ss_pred CCC
Q 011010 254 HAK 256 (495)
Q Consensus 254 ~~~ 256 (495)
...
T Consensus 293 ~~~ 295 (346)
T COG1084 293 ADE 295 (346)
T ss_pred cch
Confidence 643
No 69
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=2.5e-11 Score=137.06 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhcCCCCCCC-CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh
Q 011010 76 QQAIFNELCKMLDPGKPSF-TPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK 154 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~-~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~ 154 (495)
+..+.++|.+.+....... .........|+|+|.|||||||++|+|. +.++.+++. .+.+++
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~~-----------~~gtT~ 486 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLT------HEERAVVND-----------LAGTTR 486 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHh------CccccccCC-----------CCCCCc
Confidence 3455566666664321110 0011123579999999999999999999 877777765 444454
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcch-----HHHHHHHHHHHHHhcCCCEEEEEeeCCcccc
Q 011010 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATVNPDLVIFVMDSSIGQA 229 (495)
Q Consensus 155 ~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~-----~~l~~el~~i~~~i~~~d~vllVvDa~~g~~ 229 (495)
..+..... ..+.++.|+||||..... .+....++ ...++..+|.+++|+|++.+..
T Consensus 487 d~~~~~~~------------------~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r-~~~~i~~advvilViDat~~~s 547 (712)
T PRK09518 487 DPVDEIVE------------------IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLR-TQAAIERSELALFLFDASQPIS 547 (712)
T ss_pred CcceeEEE------------------ECCCEEEEEECCCcccCcccchhHHHHHHHH-HHHHhhcCCEEEEEEECCCCCC
Confidence 43322111 125678999999964221 11222222 2234458999999999987643
Q ss_pred HH--HHHHHHhccCCceEEEEeCccCCCCcc-chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHH
Q 011010 230 AF--DQAQAFKQSVSVGAVIVTKMDGHAKGG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMD 306 (495)
Q Consensus 230 ~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g-~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e 306 (495)
.. .......+...+..+|+||+|...... ..+.... . ..+. ...+.|..++|++.|.| +..|++
T Consensus 548 ~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~--~---------~~l~-~~~~~~ii~iSAktg~g-v~~L~~ 614 (712)
T PRK09518 548 EQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLW--K---------TEFD-RVTWARRVNLSAKTGWH-TNRLAP 614 (712)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHH--H---------Hhcc-CCCCCCEEEEECCCCCC-HHHHHH
Confidence 32 233333333334699999999864311 1111000 0 1111 12345667899999999 999999
Q ss_pred HHHHhCC
Q 011010 307 KIHEVVP 313 (495)
Q Consensus 307 ~i~~~~~ 313 (495)
.+.+.++
T Consensus 615 ~i~~~~~ 621 (712)
T PRK09518 615 AMQEALE 621 (712)
T ss_pred HHHHHHH
Confidence 9988764
No 70
>PRK09866 hypothetical protein; Provisional
Probab=99.31 E-value=6.6e-11 Score=128.28 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCCcchHH-HHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHhccC--CceEEEEeCccCCCCc
Q 011010 183 NCDLIIVDTSGRHKQEAA-LFEEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFKQSV--SVGAVIVTKMDGHAKG 257 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~-l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~~~~--~~~~vIlTK~D~~~~~ 257 (495)
.+++|||||||.+..... +.+.|.+ .+..+|.|+||+|+..+ .+....++.+.+.. .+..+|+||+|...+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e---qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ---QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH---HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 478999999999875433 4444443 45588999999999864 33334445444433 1568999999985433
Q ss_pred cchhHHHHhcCCCeEEeccCCCc-----ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHM-----DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i-----~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......+. +.+ ....+|...+++|++.|.| +..|++.+..+-
T Consensus 306 eddkE~Ll------------e~V~~~L~q~~i~f~eIfPVSAlkG~n-id~LLdeI~~~~ 352 (741)
T PRK09866 306 SDDADQVR------------ALISGTLMKGCITPQQIFPVSSMWGYL-ANRARHELANNG 352 (741)
T ss_pred cchHHHHH------------HHHHHHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHhCC
Confidence 21122221 111 1122466778999999999 999999998853
No 71
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=2.1e-11 Score=119.93 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc-----eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK-----PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-----VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
.++++|++|+||||++++|+ |.. ..+++..+++.....+.+.++....++. ....++.+ ..+.++
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~------g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~~-v~~~i~ 97 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFV------GRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKG---KKFTDFDE-VRNEIE 97 (240)
T ss_pred eEEEEcCCCccHHHHHHHHh------CCCccccCCCcccccceEEEccCCCCcceEEEecCC---cccCCHHH-HHHHHH
Confidence 69999999999999999999 543 3455555655544444344443333221 11223322 222222
Q ss_pred HHhh---------------------cCCcEEEEeCCCCCcc-----hHHHHHHHHH-HHHHhc-CCCEEEEEeeCCccc-
Q 011010 178 TFKK---------------------ENCDLIIVDTSGRHKQ-----EAALFEEMRQ-VSEATV-NPDLVIFVMDSSIGQ- 228 (495)
Q Consensus 178 ~~~~---------------------~~~dvviIDTaG~~~~-----~~~l~~el~~-i~~~i~-~~d~vllVvDa~~g~- 228 (495)
.+.. ...++.||||||+... ...+...+++ +..++. ..+.+++|+|+..+.
T Consensus 98 ~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~ 177 (240)
T smart00053 98 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA 177 (240)
T ss_pred HHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC
Confidence 2111 1378999999998632 2333344433 445664 345899999987643
Q ss_pred --cHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHH
Q 011010 229 --AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA 265 (495)
Q Consensus 229 --~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~ 265 (495)
++...++.+......+.+|+||+|...++..+++.+.
T Consensus 178 ~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~ 216 (240)
T smart00053 178 NSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILE 216 (240)
T ss_pred chhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHh
Confidence 3356677777665667999999999877665555554
No 72
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.30 E-value=5.8e-11 Score=116.36 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=84.5
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 102 ~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
++|+|.+.- ||||||++.+||.+|+++|++|++|++|+++.... .+.........+.................++.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~-w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTR-WKENALRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH-HHHhhccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 367777555 99999999999999999999999999999987442 1111111100111011111122344555666665
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHH---HHH----HhccCCceEEEEeCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQ---AQA----FKQSVSVGAVIVTKM 251 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~---~~~----f~~~~~~~~vIlTK~ 251 (495)
.+.||+|||||||..... ...++..+|.+++++.++... ...+. ... .+..++ ..+++|.+
T Consensus 81 ~~~yD~iiID~pp~~~~~---------~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~ 150 (231)
T PRK13849 81 LQGFDYALADTHGGSSEL---------NNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRV 150 (231)
T ss_pred hCCCCEEEEeCCCCccHH---------HHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEec
Confidence 568999999999975321 122223679999888876321 11111 111 122333 36999998
Q ss_pred cC
Q 011010 252 DG 253 (495)
Q Consensus 252 D~ 253 (495)
+.
T Consensus 151 ~~ 152 (231)
T PRK13849 151 PV 152 (231)
T ss_pred cc
Confidence 73
No 73
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.29 E-value=2.5e-11 Score=105.37 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=73.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|++||||||++|+|. +.+.+.++. .+.+++.-.. .... ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~------~~~~~~~~~-----------~~~~T~~~~~--~~~~----------------~~ 45 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT------GKKLAKVSN-----------IPGTTRDPVY--GQFE----------------YN 45 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TSTSSEESS-----------STTSSSSEEE--EEEE----------------ET
T ss_pred CEEEECCCCCCHHHHHHHHh------ccccccccc-----------cccceeeeee--eeee----------------ec
Confidence 38999999999999999999 777766766 4444444321 1000 12
Q ss_pred CCcEEEEeCCCCCcchHHHH--HHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeC
Q 011010 183 NCDLIIVDTSGRHKQEAALF--EEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTK 250 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~--~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK 250 (495)
+..++|+||||.......-. .....+.+.+..+|.+++|+|+..... .....+.+. ...+..+|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 56779999999865432211 234445555568999999999876322 233444454 44556999998
No 74
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.29 E-value=1.1e-11 Score=121.01 Aligned_cols=244 Identities=20% Similarity=0.262 Sum_probs=126.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC------Ccchh--HHHHH--hhhhhcCccee-ccCCCCC
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT------FRAGA--FDQLK--QNATKAKIPFY-GSYTESD 167 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~------~R~~a--~dqL~--~~a~~~~i~~~-~~~~~~d 167 (495)
.+|.+|+++|..||||||++.+|..|+..++..+.+|..|| |-+.. +|-.+ ..-++.++--. ++.+.-+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 34668999999999999999999999999999999999997 22211 11110 00001010000 0001111
Q ss_pred h----HHHHHHHHHHHhhcCCcEEEEeCCCCCcc-----hHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH----HH-
Q 011010 168 P----VRIAVEGVETFKKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF----DQ- 233 (495)
Q Consensus 168 p----~~ia~~~l~~~~~~~~dvviIDTaG~~~~-----~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~----~~- 233 (495)
. .+-..+.+++. .+.++++||||||.-.. ...+ +....... -|..+.+|||........ +.
T Consensus 97 LF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsI---Ite~lass-~ptvv~YvvDt~rs~~p~tFMSNMl 171 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSI---ITETLASS-FPTVVVYVVDTPRSTSPTTFMSNML 171 (366)
T ss_pred HHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccc---hHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHH
Confidence 1 11112223333 24689999999996321 1111 12233334 788999999976432211 11
Q ss_pred -H--HHHhccCCceEEEEeCccCCCCccchhHHHHh-------cC-CCeEEecc--CCCcccccccCc---cchhhhccC
Q 011010 234 -A--QAFKQSVSVGAVIVTKMDGHAKGGGALSAVAA-------TK-SPVIFIGT--GEHMDEFEVFDV---KPFVSRLLG 297 (495)
Q Consensus 234 -~--~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~-------~~-~PI~fi~~--Ge~i~~l~~f~p---~~~vS~l~G 297 (495)
+ -.++..+| .++++||+|..... -++.+... .. .--.|+++ +.----|+.|+. ..-+|+.+|
T Consensus 172 YAcSilyktklp-~ivvfNK~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 172 YACSILYKTKLP-FIVVFNKTDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHHhccCC-eEEEEecccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 1 12333455 59999999986542 33333211 00 01111110 000011233332 345899999
Q ss_pred CCCcHHHHHHHHHhCCCCCchH--Hhhccccch--hcHHHHHHHHHHHhccCChhHH
Q 011010 298 MGDWSGFMDKIHEVVPMDQQPE--LLQKLSEGN--FTLRIMYEQFQNILKMGPIGQV 350 (495)
Q Consensus 298 ~Gdi~~L~e~i~~~~~~~~~~~--~~~~~~~~~--f~~~d~~~ql~~~~k~g~~~~~ 350 (495)
.| .++++.++.+.+++...+. ..+|.++.+ ..-+.-..|+..++|=+..+.+
T Consensus 250 ~G-~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~ 305 (366)
T KOG1532|consen 250 EG-FDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPL 305 (366)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccc
Confidence 99 9999999998886443221 223333221 1122233455555555554444
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=6.2e-11 Score=126.34 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=102.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.|||||||+++.|. |....+++. .+.+++..+.....
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~-----------~~gtt~~~~~~~~~------------------ 217 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALL------GEERVIVSD-----------IAGTTRDSIDTPFE------------------ 217 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCceEEEEEEEEE------------------
Confidence 4679999999999999999999 888777776 34455544322211
Q ss_pred hcCCcEEEEeCCCCCcch--HHHHHHH--HHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQE--AALFEEM--RQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~--~~l~~el--~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
..+.++.|+||||..... ....+.. .+...++..+|.+++|+|++.+....+ .+....+...+..+|+||+|..
T Consensus 218 ~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 125678999999964221 1112211 222334458899999999986643322 2222222223468999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... .......... +.+. ...+.|..++|+..|.| +..+++.+.+..
T Consensus 298 ~~~-~~~~~~~~~~---------~~l~-~~~~~~i~~~SA~~~~g-v~~l~~~i~~~~ 343 (435)
T PRK00093 298 DEK-TMEEFKKELR---------RRLP-FLDYAPIVFISALTGQG-VDKLLEAIDEAY 343 (435)
T ss_pred CHH-HHHHHHHHHH---------Hhcc-cccCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 321 1111111000 1111 12346778999999999 999999988765
No 76
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.29 E-value=8e-12 Score=118.06 Aligned_cols=173 Identities=19% Similarity=0.243 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh---cCcceeccCCCCChHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK---AKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~---~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.+|+++|+.|+|||||+.+|..........-..-.. ....+......++ ..+......
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~----~~~~~~~~~e~~~~~ti~~~~~~~~--------------- 64 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK----NAFLDKHPEERERGITIDLSFISFE--------------- 64 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH----HCHHHSSHHHHHCTSSSSSEEEEEE---------------
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccc----cccccccchhhhccccccccccccc---------------
Confidence 579999999999999999999665321110000000 0001111111111 011111100
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.....+.+.||||||.. ++..+ ....+..+|.+++|||+..|... ...+..... ..+ ..+++||+|...
T Consensus 65 ~~~~~~~i~~iDtPG~~----~f~~~---~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~ 136 (188)
T PF00009_consen 65 KNENNRKITLIDTPGHE----DFIKE---MIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLIE 136 (188)
T ss_dssp BTESSEEEEEEEESSSH----HHHHH---HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSSH
T ss_pred ccccccceeeccccccc----ceeec---ccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccchh
Confidence 01246789999999973 23333 33445589999999999876432 223333332 245 699999999872
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-cc--cc--ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DE--FE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~--l~--~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
. .......... +.+ .. .. .+.|..++|++.|.| +..|++.+.+++|
T Consensus 137 ~--~~~~~~~~~~---------~~l~~~~~~~~~~~~~vi~~Sa~~g~g-i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 137 K--ELEEIIEEIK---------EKLLKEYGENGEEIVPVIPISALTGDG-IDELLEALVELLP 187 (188)
T ss_dssp H--HHHHHHHHHH---------HHHHHHTTSTTTSTEEEEEEBTTTTBT-HHHHHHHHHHHS-
T ss_pred h--hHHHHHHHHH---------HHhccccccCccccceEEEEecCCCCC-HHHHHHHHHHhCc
Confidence 1 1111111000 000 00 11 245788999999999 9999999999886
No 77
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=1.2e-11 Score=127.54 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
-|+|||.|||||||++++|. +.++. |+. .+.+|..-. .+.... .+
T Consensus 160 dVglVG~PNaGKSTLln~ls------~a~~~-va~-----------ypfTT~~p~--~G~v~~---------------~~ 204 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVS------AAKPK-IAD-----------YPFTTLHPN--LGVVRV---------------DD 204 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHH------cCCCc-cCC-----------CCCceeCce--EEEEEe---------------CC
Confidence 48999999999999999999 65554 344 233443321 111110 02
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccc--cHHH----HHHHHhcc--CCceEEEEeCccC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQ--AAFD----QAQAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~--~~~~----~~~~f~~~--~~~~~vIlTK~D~ 253 (495)
...++|+||||....... ...+ ..+.+.+..++.+++|+|++... +... .+..+... -.+..+|+||+|.
T Consensus 205 ~~~~~i~D~PGli~ga~~-~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 205 YKSFVIADIPGLIEGASE-GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred CcEEEEEeCCCccCCCCc-cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 457899999998542211 0112 23344455789999999987432 2221 12222221 2346999999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
............ .....+ -.+.+++|++.|.| ++.|++++.+.+.
T Consensus 284 ~~~~~~~~~~~~------------~~~~~~--~~~i~~iSAktg~G-I~eL~~~L~~~l~ 328 (335)
T PRK12299 284 LDEEEEREKRAA------------LELAAL--GGPVFLISAVTGEG-LDELLRALWELLE 328 (335)
T ss_pred CCchhHHHHHHH------------HHHHhc--CCCEEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 533211101111 000111 13456799999999 9999999988764
No 78
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.29 E-value=2.1e-11 Score=117.66 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH------------HHHH-----hh--------hhhcCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLK-----QN--------ATKAKI 157 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~------------dqL~-----~~--------a~~~~i 157 (495)
+|++.|..||||||++.+||.+|++.|++|++|++|++..... +-+. .. ....++
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGGV 81 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCCc
Confidence 6899999999999999999999999999999999998753321 1011 00 001233
Q ss_pred ceeccCCCC-C-----hH-----HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 158 PFYGSYTES-D-----PV-----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 158 ~~~~~~~~~-d-----p~-----~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
.+.+..... + +. ...+ .+..+ .+.||||||||+|........ ..+ . ...+|.+++|+++..
T Consensus 82 ~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l----~-~~~ad~vliv~~p~~ 153 (212)
T cd02117 82 KCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPI----R-EGKADEIYIVTSGEF 153 (212)
T ss_pred EEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-ccc----c-cccCcEEEEEecccH
Confidence 333221110 0 00 1111 22222 457999999998865322110 000 0 125899999998863
Q ss_pred cc--cH---HHHHHHHhc--cCCceEEEEeCccCC
Q 011010 227 GQ--AA---FDQAQAFKQ--SVSVGAVIVTKMDGH 254 (495)
Q Consensus 227 g~--~~---~~~~~~f~~--~~~~~~vIlTK~D~~ 254 (495)
.. +. .+..+.++. ...+.++|+||++..
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 21 11 223344433 334578999999864
No 79
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.28 E-value=3.5e-11 Score=106.93 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=90.9
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCc
Q 011010 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (495)
Q Consensus 106 ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~d 185 (495)
++|++||||||++++|. +..+..++.+. .++.......... ...++
T Consensus 1 i~G~~gsGKstl~~~l~------~~~~~~~~~~~-----------~~~~~~~~~~~~~-----------------~~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALL------GQEVAIVSPVP-----------GTTTDPVEYVWEL-----------------GPLGP 46 (163)
T ss_pred CcCCCCCCHHHHHHHHh------CccccccCCCC-----------CcEECCeEEEEEe-----------------cCCCc
Confidence 57999999999999998 55444333311 1111111111100 01578
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH--HHHHhccCCceEEEEeCccCCCCccchhHH
Q 011010 186 LIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTKMDGHAKGGGALSA 263 (495)
Q Consensus 186 vviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~--~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~ 263 (495)
++|+||||.....................+|.+++|+|+......... ...+.....+..+|+||+|........ ..
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~ 125 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE-EL 125 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH-HH
Confidence 999999997543221111012223334478999999999876544332 333333334468999999986543211 11
Q ss_pred HHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 264 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 264 ~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.. ............|...+|+..+.| +..+++.+.+.
T Consensus 126 ~~----------~~~~~~~~~~~~~~~~~sa~~~~~-v~~l~~~l~~~ 162 (163)
T cd00880 126 LE----------LRLLILLLLLGLPVIAVSALTGEG-IDELREALIEA 162 (163)
T ss_pred HH----------HHHhhcccccCCceEEEeeeccCC-HHHHHHHHHhh
Confidence 10 001112233445667789999999 99998888664
No 80
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.28 E-value=5.4e-11 Score=114.02 Aligned_cols=184 Identities=18% Similarity=0.257 Sum_probs=110.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhh--hcCc-cee--ccC---CCCChHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--KAKI-PFY--GSY---TESDPVRIA 172 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~--~~~i-~~~--~~~---~~~dp~~ia 172 (495)
|..|+|+|++||||||++.++...+.. ..++.++..|.+.....+.+...+- ...+ .+. +.. ...+.. ..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDAS-MN 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHH-HH
Confidence 347999999999999999999987765 3568899999876544444433221 1111 000 000 011221 12
Q ss_pred HHHHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH-HHHHhccCCceEEEEe
Q 011010 173 VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVT 249 (495)
Q Consensus 173 ~~~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~~~~vIlT 249 (495)
..++.... ..++|+++|+|.|..-.. ... .. -+|.++.|+|+..+.+.... ...+. .-+.+|+|
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~~-~~~-------~~--l~~~~i~vvD~~~~~~~~~~~~~qi~---~ad~~~~~ 145 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLSA-TFS-------PE--LADLTIFVIDVAAGDKIPRKGGPGIT---RSDLLVIN 145 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCccc-ccc-------hh--hhCcEEEEEEcchhhhhhhhhHhHhh---hccEEEEE
Confidence 33444432 236899999999952111 110 11 14679999999866553221 11111 12579999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 250 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|+|.....+..+.... +.+..+.+..+...+|++.|.| ++.+++++.+.+
T Consensus 146 k~d~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~el~~~i~~~~ 195 (199)
T TIGR00101 146 KIDLAPMVGADLGVME------------RDAKKMRGEKPFIFTNLKTKEG-LDTVIDWIEHYA 195 (199)
T ss_pred hhhccccccccHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHhhc
Confidence 9998743222233322 3344455556778899999999 999999998764
No 81
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.26 E-value=3e-11 Score=111.35 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||++++|. |..+. .. +...+.+ .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~------~~~~~--~~---------------~~~~v~~----~------------------ 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ------GNYTL--AR---------------KTQAVEF----N------------------ 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc------CCCcc--Cc---------------cceEEEE----C------------------
Confidence 59999999999999999998 54321 00 0011111 0
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
.. -++||||..........++ ...+..+|.+++|+|++.+..... ....+.... +..+++||+|..... ..
T Consensus 38 ~~--~~iDtpG~~~~~~~~~~~~---~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~-~ii~v~nK~Dl~~~~--~~ 109 (158)
T PRK15467 38 DK--GDIDTPGEYFSHPRWYHAL---ITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSK-RQIAVISKTDMPDAD--VA 109 (158)
T ss_pred CC--CcccCCccccCCHHHHHHH---HHHHhcCCEEEEEEeCCCcccccCHHHHhccCCC-CeEEEEEccccCccc--HH
Confidence 00 1699999754433343333 223448999999999986543211 112222222 358999999974321 11
Q ss_pred HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 262 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
... +.+..+....|..++|++.|.| ++.|++++.+.++.
T Consensus 110 ~~~-------------~~~~~~~~~~p~~~~Sa~~g~g-i~~l~~~l~~~~~~ 148 (158)
T PRK15467 110 ATR-------------KLLLETGFEEPIFELNSHDPQS-VQQLVDYLASLTKQ 148 (158)
T ss_pred HHH-------------HHHHHcCCCCCEEEEECCCccC-HHHHHHHHHHhchh
Confidence 111 1122232234778899999999 99999999988753
No 82
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.26 E-value=5.7e-11 Score=108.64 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+|+|.+||||||++++|. +.++..... ...+. .+..+...... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~------~~~~~~~~~------------~~~t~-~~~~~~~~~~~--------------~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR------KTNVAAGEA------------GGITQ-HIGAFEVPAEV--------------LK 48 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH------hcccccccC------------CCeEE-eeccEEEeccc--------------CC
Confidence 59999999999999999998 333322110 00010 00001100000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCCcc-c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGG-G 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~~g-~ 259 (495)
++++.|+||||..... .+. ......+|.+++|+|++.+.. .......+.....+..+|+||+|...... .
T Consensus 49 ~~~~~iiDtpG~~~~~-----~~~--~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 121 (168)
T cd01887 49 IPGITFIDTPGHEAFT-----NMR--ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPER 121 (168)
T ss_pred cceEEEEeCCCcHHHH-----HHH--HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHH
Confidence 6789999999973211 111 112237899999999986422 22223333322234589999999853211 1
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... + .+......+...+|+..|.| +..|++++.++.
T Consensus 122 ~~~~~~~~~~~------~--~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (168)
T cd01887 122 VKNELSELGLQ------G--EDEWGGDVQIVPTSAKTGEG-IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHhhcc------c--cccccCcCcEEEeecccCCC-HHHHHHHHHHhh
Confidence 11112111100 0 01112234567899999999 999999987764
No 83
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.26 E-value=2.6e-11 Score=119.37 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=68.0
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC------Ccchh-HHHHHhh---hhhcCcc-----eeccCCCCChHH
Q 011010 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT------FRAGA-FDQLKQN---ATKAKIP-----FYGSYTESDPVR 170 (495)
Q Consensus 106 ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~------~R~~a-~dqL~~~---a~~~~i~-----~~~~~~~~dp~~ 170 (495)
|+|++||||||+|..+..|+...|+++.+|..|| |.|.- +..+... .+..+.. .++........+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 22211 1111100 0000000 000000000112
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc--CCCEEEEEeeCCccccHHHHHH--------HHhcc
Q 011010 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV--NPDLVIFVMDSSIGQAAFDQAQ--------AFKQS 240 (495)
Q Consensus 171 ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~--~~d~vllVvDa~~g~~~~~~~~--------~f~~~ 240 (495)
...+.++.. ..+++||||||..... .....+..+.+.+. ..-.+++++|+....+...... .++-.
T Consensus 81 ~l~~~i~~~---~~~y~l~DtPGQiElf-~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~ 156 (238)
T PF03029_consen 81 WLDEEIEKY---EDDYLLFDTPGQIELF-THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE 156 (238)
T ss_dssp HHHHHHHHH---H-SEEEEE--SSHHHH-HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc---CCcEEEEeCCCCEEEE-EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC
Confidence 222333332 2389999999974322 12222344444442 2457889999986554333221 12222
Q ss_pred CCceEEEEeCccCCC
Q 011010 241 VSVGAVIVTKMDGHA 255 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~ 255 (495)
+ +...|+||+|...
T Consensus 157 l-P~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 157 L-PHVNVLSKIDLLS 170 (238)
T ss_dssp S-EEEEEE--GGGS-
T ss_pred C-CEEEeeeccCccc
Confidence 3 4699999999876
No 84
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.26 E-value=2.1e-10 Score=109.79 Aligned_cols=145 Identities=21% Similarity=0.240 Sum_probs=89.2
Q ss_pred CeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh----------------------hhhcCc
Q 011010 101 PSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN----------------------ATKAKI 157 (495)
Q Consensus 101 ~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~----------------------a~~~~i 157 (495)
+++|+|++ .+|+||||++.+||..+++.|++|++|++|++.+.....+... ....++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 56788885 4599999999999999999999999999999776432211100 011233
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-ccH
Q 011010 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QAA 230 (495)
Q Consensus 158 ~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~~ 230 (495)
.+..... ..++... ..+.+..+ ...||+||||||+.....+.. .+. ..+|.+++|+++... ...
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l-~~~yD~ViiD~pp~~~~~~~~-----~~~---~~~D~vilV~~~~~~~~~~ 167 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETL-RKYFDYIIIDTPPIGTVTDAA-----IIA---RACDASILVTDAGEIKKRD 167 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCccccchHH-----HHH---HhCCeEEEEEECCCCCHHH
Confidence 3333221 1222221 23445555 358999999999854322110 011 147999999998632 222
Q ss_pred H-HHHHHHhc-cCCceEEEEeCccCC
Q 011010 231 F-DQAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 231 ~-~~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
. .....+.. ..++.++|+||+|..
T Consensus 168 ~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 168 VQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 2 23333332 236789999999864
No 85
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.25 E-value=2.4e-11 Score=109.76 Aligned_cols=137 Identities=23% Similarity=0.270 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+.|+|+|+.|+|||||+++|- |...-.-- ..-+.
T Consensus 2 krimliG~~g~GKTTL~q~L~------~~~~~~~K-----------------Tq~i~----------------------- 35 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN------GEEIRYKK-----------------TQAIE----------------------- 35 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc------CCCCCcCc-----------------cceeE-----------------------
Confidence 469999999999999999998 53221000 00111
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCCc--
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG-- 257 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~~-- 257 (495)
.++ .+|||||-.-....+...+ +..+. ++|.|++|.||+.... ....+..|.. +.+=|+||+|.....
T Consensus 36 -~~~-~~IDTPGEyiE~~~~y~aL--i~ta~-dad~V~ll~dat~~~~~~pP~fa~~f~~---pvIGVITK~Dl~~~~~~ 107 (143)
T PF10662_consen 36 -YYD-NTIDTPGEYIENPRFYHAL--IVTAQ-DADVVLLLQDATEPRSVFPPGFASMFNK---PVIGVITKIDLPSDDAN 107 (143)
T ss_pred -ecc-cEEECChhheeCHHHHHHH--HHHHh-hCCEEEEEecCCCCCccCCchhhcccCC---CEEEEEECccCccchhh
Confidence 112 4699999765555555444 23334 8999999999986543 3345666653 357789999987332
Q ss_pred -cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 258 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 258 -g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
..+...+...| +...+.+|+..|.| +++|.+.+++
T Consensus 108 i~~a~~~L~~aG-----------------~~~if~vS~~~~eG-i~eL~~~L~~ 143 (143)
T PF10662_consen 108 IERAKKWLKNAG-----------------VKEIFEVSAVTGEG-IEELKDYLEE 143 (143)
T ss_pred HHHHHHHHHHcC-----------------CCCeEEEECCCCcC-HHHHHHHHhC
Confidence 22222333222 12237799999999 9999988764
No 86
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=2e-11 Score=131.10 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
-|+|||.||||||||+++|+ +.++.+ +. .+++|+.-. .+... ..
T Consensus 161 dV~LVG~PNAGKSTLln~Ls------~akpkI-ad-----------ypfTTl~P~--lGvv~----------------~~ 204 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALS------AAKPKI-AD-----------YPFTTLVPN--LGVVQ----------------AG 204 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHh------cCCccc-cc-----------cCcccccce--EEEEE----------------EC
Confidence 58999999999999999999 666543 33 334444322 12111 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcc---ccH---HH----HHHHHhc-----------c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIG---QAA---FD----QAQAFKQ-----------S 240 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g---~~~---~~----~~~~f~~-----------~ 240 (495)
+..++|+||||+....... ..+ ..+...+..+|.+++|+|++.. .+. .+ .+..+.. .
T Consensus 205 ~~~f~laDtPGliegas~g-~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEG-KGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred CeEEEEEECCCCccccchh-hHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 4678999999985432211 112 2234445578999999999741 121 11 2222221 1
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
-.+..||+||+|..... ....... +.+... -.+.+++|+..|.| +..|++++.+.+.
T Consensus 284 ~kP~IVVlNKiDL~da~-el~e~l~------------~~l~~~--g~~Vf~ISA~tgeG-LdEL~~~L~ell~ 340 (500)
T PRK12296 284 ERPRLVVLNKIDVPDAR-ELAEFVR------------PELEAR--GWPVFEVSAASREG-LRELSFALAELVE 340 (500)
T ss_pred CCCEEEEEECccchhhH-HHHHHHH------------HHHHHc--CCeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 23469999999985321 1111111 111111 12567889999999 9999999888763
No 87
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.25 E-value=1.6e-10 Score=108.18 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=84.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee--ccCCCCChH--------HHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPV--------RIAV 173 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~--~~~~~~dp~--------~ia~ 173 (495)
.+.-|.+|+||||++.+||..| ++|++|++|++++.....+...... ...+. ......++. .-..
T Consensus 3 ~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEE-EEDFIVGGKKAVIDPELCISCGLCGKLV 77 (179)
T ss_pred EEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccc-cccceecCCceEEchhhhccccchHHHH
Confidence 3445888999999999999999 7999999999987654332211110 00000 000000100 0001
Q ss_pred HHHHHH-----hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhcc-CCceE
Q 011010 174 EGVETF-----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGA 245 (495)
Q Consensus 174 ~~l~~~-----~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~-~~~~~ 245 (495)
..+... ....||++||||||..... ....+..+|.+++|+.+.... +.....+.+... .+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~d~viiDtpp~~~~~---------~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~ 147 (179)
T cd03110 78 TEVRKHAKEIAKAEGAELIIIDGPPGIGCP---------VIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VG 147 (179)
T ss_pred HHHHHHHHHhhhhcCCCEEEEECcCCCcHH---------HHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EE
Confidence 112221 2368999999999764321 112233789999999987431 222233333322 33 48
Q ss_pred EEEeCccCCCCc-cchhHHHHhcCCCe
Q 011010 246 VIVTKMDGHAKG-GGALSAVAATKSPV 271 (495)
Q Consensus 246 vIlTK~D~~~~~-g~~ls~~~~~~~PI 271 (495)
+|+||+|..... ..+...+...+.|+
T Consensus 148 vV~N~~~~~~~~~~~~~~~~~~~~~~v 174 (179)
T cd03110 148 VVINKYDLNDEIAEEIEDYCEEEGIPI 174 (179)
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCe
Confidence 999999975432 22333444455554
No 88
>PRK04213 GTP-binding protein; Provisional
Probab=99.23 E-value=1.2e-10 Score=110.69 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||++++|. |.+.. ++. .+.+++....+
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~------~~~~~-~~~-----------~~~~t~~~~~~---------------------- 49 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELT------GKKVR-VGK-----------RPGVTRKPNHY---------------------- 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCceeeCceEE----------------------
Confidence 469999999999999999998 54421 111 11122211110
Q ss_pred cCCcEEEEeCCCCCcc---h---HHHHHH-HHHHH-HHhcCCCEEEEEeeCCccccH-------------HHHHHHHhcc
Q 011010 182 ENCDLIIVDTSGRHKQ---E---AALFEE-MRQVS-EATVNPDLVIFVMDSSIGQAA-------------FDQAQAFKQS 240 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~---~---~~l~~e-l~~i~-~~i~~~d~vllVvDa~~g~~~-------------~~~~~~f~~~ 240 (495)
...++.++||||.... . .+.... +.... ..+..++.+++|+|+...... ......+...
T Consensus 50 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (201)
T PRK04213 50 DWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL 129 (201)
T ss_pred eecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc
Confidence 0116899999995211 1 111111 12222 233356899999998643211 1112222222
Q ss_pred CCceEEEEeCccCCCCccchh-HHHHhcCCCeEEeccCCCcccccc-cCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 241 VSVGAVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~l-s~~~~~~~PI~fi~~Ge~i~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
-.+..+|+||+|......... .+....+.. + .... ..+...+|++.| | ++.+++++.+.+++.
T Consensus 130 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~SA~~g-g-i~~l~~~l~~~~~~~ 194 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRDEVLDEIAERLGLY-------P---PWRQWQDIIAPISAKKG-G-IEELKEAIRKRLHEA 194 (201)
T ss_pred CCCeEEEEECccccCcHHHHHHHHHHHhcCC-------c---cccccCCcEEEEecccC-C-HHHHHHHHHHhhcCc
Confidence 223599999999853321111 112111110 0 0000 124578999999 9 999999999887643
No 89
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.23 E-value=6.7e-11 Score=110.74 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+|+|.+||||||++|+|. +.+ +..++. ...+++ .+.++..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~~----------------- 62 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALT------NRKKLARTSK-----------TPGRTQ-LINFFEV----------------- 62 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC-----------CCCcce-EEEEEEe-----------------
Confidence 4479999999999999999998 543 443332 111221 1112210
Q ss_pred hhcCCcEEEEeCCCCCcch------HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCc
Q 011010 180 KKENCDLIIVDTSGRHKQE------AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~------~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~ 251 (495)
+.+++++||||..... ..+...+.........++.+++|+|++.+....+ ....+.....+..+|+||+
T Consensus 63 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 139 (179)
T TIGR03598 63 ---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKA 139 (179)
T ss_pred ---CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 1257999999964221 1122222222222224688999999986433222 2333433323458999999
Q ss_pred cCCC
Q 011010 252 DGHA 255 (495)
Q Consensus 252 D~~~ 255 (495)
|...
T Consensus 140 D~~~ 143 (179)
T TIGR03598 140 DKLK 143 (179)
T ss_pred ccCC
Confidence 9853
No 90
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.22 E-value=1.2e-10 Score=131.85 Aligned_cols=146 Identities=20% Similarity=0.146 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.|||||||++|+|. |.+.. |.. .+..|.....-.. ..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-vgn-----------~pGvTve~k~g~~------------------~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-VGN-----------WAGVTVERKEGQF------------------ST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCceEeeEEEEE------------------Ec
Confidence 469999999999999999998 65432 222 1222221111000 11
Q ss_pred cCCcEEEEeCCCCCcchH-----HHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCC
Q 011010 182 ENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~-----~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
.++++.++||||...... ...+.+.+..-....+|.+++|+|++.............+...+..+|+||+|...+
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 367899999999753221 122222111111237899999999986544333333333333446999999998644
Q ss_pred ccchh---HHHHhcCCCeEEec--cCCCcccc
Q 011010 257 GGGAL---SAVAATKSPVIFIG--TGEHMDEF 283 (495)
Q Consensus 257 ~g~~l---s~~~~~~~PI~fi~--~Ge~i~~l 283 (495)
.+... ......+.|+..++ +|++++++
T Consensus 128 ~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 128 QNIRIDIDALSARLGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred cCcHHHHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 33221 22344677776666 55665544
No 91
>COG2262 HflX GTPases [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=120.28 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|++||.+|+||||++|.|. |..+..-+- .| .-|.+-+.+..+ .
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT------~~~~~~~d~-LF-----ATLdpttR~~~l-----------------------~ 237 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALT------GADVYVADQ-LF-----ATLDPTTRRIEL-----------------------G 237 (411)
T ss_pred CeEEEEeeccccHHHHHHHHh------ccCeecccc-cc-----ccccCceeEEEe-----------------------C
Confidence 479999999999999999999 554442211 00 001111111111 1
Q ss_pred cCCcEEEEeCCCC-CcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc------HHHHHHHHhccCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGR-HKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA------AFDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~-~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~------~~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
.+..+++-||-|+ .+....+.+..+...+.+..+|.++.|||++...- ..+++....-.-.+..+|+||+|..
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 2678999999997 44566788888777766669999999999986421 1122223222224579999999976
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.... .+. .+....+ +.+++|+..|.| ++.|.+.+.+.++
T Consensus 318 ~~~~-~~~----------------~~~~~~~--~~v~iSA~~~~g-l~~L~~~i~~~l~ 356 (411)
T COG2262 318 EDEE-ILA----------------ELERGSP--NPVFISAKTGEG-LDLLRERIIELLS 356 (411)
T ss_pred Cchh-hhh----------------hhhhcCC--CeEEEEeccCcC-HHHHHHHHHHHhh
Confidence 5432 111 1111112 357899999999 9999999999875
No 92
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.22 E-value=5.6e-11 Score=113.12 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=73.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|.|||||||++|.|+ |.++..+..+.. ..+..... +. ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~~~---------~~T~~~~~--~~-----------------~~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLSAS---------SVTKTCQK--ES-----------------AVWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccCCC---------Ccccccce--ee-----------------EEEC
Confidence 58999999999999999999 887765543210 01111010 00 0013
Q ss_pred CCcEEEEeCCCCCcc---hHHHHHHHHHHH-HHhcCCCEEEEEeeCCc-cccHHHHHHHHhcc-----CCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVS-EATVNPDLVIFVMDSSI-GQAAFDQAQAFKQS-----VSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~---~~~l~~el~~i~-~~i~~~d~vllVvDa~~-g~~~~~~~~~f~~~-----~~~~~vIlTK~D 252 (495)
+..+.||||||+... .+.+..++.+.. .....+|.++||+|+.. ..+....++.+.+. .....+|+|+.|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 678999999998654 234444553332 33347899999999875 22233334444332 245689999999
Q ss_pred CCCC
Q 011010 253 GHAK 256 (495)
Q Consensus 253 ~~~~ 256 (495)
....
T Consensus 128 ~l~~ 131 (196)
T cd01852 128 DLEG 131 (196)
T ss_pred ccCC
Confidence 7643
No 93
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.21 E-value=1.2e-10 Score=105.64 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=84.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+++|.+||||||++++|. |.+....... + .+..+. ...+.. ..- ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~------~~~~~~~~~~-~--------~~~~t~-~~~~~~-~~~---------------~~ 49 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT------GIETDRLPEE-K--------KRGITI-DLGFAY-LDL---------------PS 49 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh------Ccccccchhh-h--------ccCceE-EeeeEE-EEe---------------cC
Confidence 68999999999999999998 5432211110 0 011111 111110 000 01
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc-cCCceEEEEeCccCCCCcc-
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g- 258 (495)
++.+.++||||... ... .+......+|.+++|+|++.+. ........+.. ..++..+|+||+|......
T Consensus 50 ~~~~~~~DtpG~~~----~~~---~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 50 GKRLGFIDVPGHEK----FIK---NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred CcEEEEEECCChHH----HHH---HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence 46789999999632 211 2223344899999999997632 12222222211 2334689999999854311
Q ss_pred -chhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHH
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
....... +.+... ....+..++|+..|.| ++.+++.+.+
T Consensus 123 ~~~~~~~~------------~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIR------------ELLAGTFLADAPIFPVSAVTGEG-IEELKEYLDE 163 (164)
T ss_pred HHHHHHHH------------HHHHhcCcCCCcEEEEeCCCCcC-HHHHHHHHhh
Confidence 0111111 001100 0123567789999999 9999888754
No 94
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=6.7e-11 Score=125.29 Aligned_cols=156 Identities=16% Similarity=0.213 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
-|+|||.|||||||++++|+ +.++.+ +. .+.+|..-. ++.... ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt------~ak~kI-a~-----------ypfTTl~Pn--lG~v~~---------------~~ 204 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVS------NAKPKI-AN-----------YHFTTLVPN--LGVVET---------------DD 204 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHH------cCCCcc-cc-----------CCcceeceE--EEEEEE---------------eC
Confidence 59999999999999999999 666553 22 223333211 111100 01
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcc--ccHHH-------HHHHHhcc--CCceEEEEeC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIG--QAAFD-------QAQAFKQS--VSVGAVIVTK 250 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g--~~~~~-------~~~~f~~~--~~~~~vIlTK 250 (495)
+..++|+||||....... ...+ ......+..++.+++|+|++.. .+..+ .+..+... -.+..+|+||
T Consensus 205 ~~~~~laD~PGliega~~-~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK 283 (424)
T PRK12297 205 GRSFVMADIPGLIEGASE-GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANK 283 (424)
T ss_pred CceEEEEECCCCcccccc-cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeC
Confidence 467899999998532211 1112 2233444478999999998642 12221 12222221 2346899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
+|..... ..+.... ..+. .+..++|+.+|.| ++.|++++.+.+.
T Consensus 284 ~DL~~~~-e~l~~l~---------------~~l~--~~i~~iSA~tgeG-I~eL~~~L~~~l~ 327 (424)
T PRK12297 284 MDLPEAE-ENLEEFK---------------EKLG--PKVFPISALTGQG-LDELLYAVAELLE 327 (424)
T ss_pred CCCcCCH-HHHHHHH---------------HHhC--CcEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 9973221 1111111 1111 3456789999999 9999999988764
No 95
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.20 E-value=2.4e-10 Score=112.15 Aligned_cols=142 Identities=16% Similarity=0.215 Sum_probs=83.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------------HHHHHhh--------hhhcCccee
Q 011010 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQN--------ATKAKIPFY 160 (495)
Q Consensus 103 vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------------~dqL~~~--------a~~~~i~~~ 160 (495)
+|+|+ +..||||||++.+||.+|+++|++|++|++|++.+.+ .+.+... .+..++.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 56676 5569999999999999999999999999999854321 1111100 011233333
Q ss_pred ccCCCC-----ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHH
Q 011010 161 GSYTES-----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQ 233 (495)
Q Consensus 161 ~~~~~~-----dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~ 233 (495)
...... .......+.+..+ ...||+||||||+..... ...++..+|.+++|+++.... +....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l-~~~yD~VIiD~p~~~~~~---------~~~~l~~ad~vliv~~~~~~s~~~~~~~ 151 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEI-IDDTDFLLIDAPAGLERD---------AVTALAAADELLLVVNPEISSITDALKT 151 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHH-HhhCCEEEEeCCCccCHH---------HHHHHHhCCeEEEEECCCCchHHHHHHH
Confidence 321110 0122234455554 357999999998865322 111222679999999986321 11222
Q ss_pred HHHHhc-cCCceEEEEeCccCC
Q 011010 234 AQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 234 ~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
...... ..++.++|+|+++..
T Consensus 152 ~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 152 KIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHHhcCCceEEEEEECCCch
Confidence 221211 245578999999864
No 96
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.20 E-value=5e-11 Score=109.67 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=84.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc-CC
Q 011010 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE-NC 184 (495)
Q Consensus 106 ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~-~~ 184 (495)
|+|++||||||++++|+ +.++ .++. .+.++..-. +.... .. +.
T Consensus 1 iiG~~~~GKStll~~l~------~~~~-~~~~-----------~~~~t~~~~--~~~~~----------------~~~~~ 44 (176)
T cd01881 1 LVGLPNVGKSTLLNALT------NAKP-KVAN-----------YPFTTLEPN--LGVVE----------------VPDGA 44 (176)
T ss_pred CCCCCCCcHHHHHHHHh------cCCc-cccC-----------CCceeecCc--ceEEE----------------cCCCC
Confidence 57999999999999999 6655 2222 111111100 00000 12 57
Q ss_pred cEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccc-----cHHH-------HHHHHhc-------cCCce
Q 011010 185 DLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQ-----AAFD-------QAQAFKQ-------SVSVG 244 (495)
Q Consensus 185 dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~-----~~~~-------~~~~f~~-------~~~~~ 244 (495)
.+.|+||||....... .+.+ ..+...+..+|.+++|+|++... ...+ ....... ...+.
T Consensus 45 ~~~i~DtpG~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 123 (176)
T cd01881 45 RIQVADIPGLIEGASE-GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPV 123 (176)
T ss_pred eEEEEeccccchhhhc-CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCe
Confidence 8899999997422110 0111 12233344789999999997542 2111 1111111 12345
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 245 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 245 ~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.+|+||+|....... ..... .........+...+|+..|.| +..+++.+...
T Consensus 124 ivv~NK~Dl~~~~~~-~~~~~-------------~~~~~~~~~~~~~~Sa~~~~g-l~~l~~~l~~~ 175 (176)
T cd01881 124 IYVLNKIDLDDAEEL-EEELV-------------RELALEEGAEVVPISAKTEEG-LDELIRAIYEL 175 (176)
T ss_pred EEEEEchhcCchhHH-HHHHH-------------HHHhcCCCCCEEEEehhhhcC-HHHHHHHHHhh
Confidence 899999998644221 11100 011112234457789999999 99999887654
No 97
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=108.03 Aligned_cols=159 Identities=24% Similarity=0.237 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
=|+|+|++||||||++|.|. |++ .+=++. +++-|+. +.||..
T Consensus 26 EIaF~GRSNVGKSSlIN~l~------~~k~LArtSk-----------tPGrTq~-iNff~~------------------- 68 (200)
T COG0218 26 EIAFAGRSNVGKSSLINALT------NQKNLARTSK-----------TPGRTQL-INFFEV------------------- 68 (200)
T ss_pred EEEEEccCcccHHHHHHHHh------CCcceeecCC-----------CCCccce-eEEEEe-------------------
Confidence 59999999999999999999 744 676776 4444443 333331
Q ss_pred cCCcEEEEeCCCCC--cchHHHHHH----HHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccC
Q 011010 182 ENCDLIIVDTSGRH--KQEAALFEE----MRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDG 253 (495)
Q Consensus 182 ~~~dvviIDTaG~~--~~~~~l~~e----l~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~ 253 (495)
...+.|||.||+. .......+. +.++...-.+-..+++++|+..+....+ ....+...--+..||+||+|.
T Consensus 69 -~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 69 -DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred -cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1237899999973 222222222 2333332224467889999997765433 344555443346999999999
Q ss_pred CCCccch--hHHHH-hcCCCeEEeccCCCcccccccCc-cchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGA--LSAVA-ATKSPVIFIGTGEHMDEFEVFDV-KPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~--ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p-~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..++... +.... ....+ .+..+ ..+.|...+.| ++.|.+.+.+.+.
T Consensus 148 i~~~~~~k~l~~v~~~l~~~-------------~~~~~~~~~~ss~~k~G-i~~l~~~i~~~~~ 197 (200)
T COG0218 148 LKKSERNKQLNKVAEELKKP-------------PPDDQWVVLFSSLKKKG-IDELKAKILEWLK 197 (200)
T ss_pred CChhHHHHHHHHHHHHhcCC-------------CCccceEEEEecccccC-HHHHHHHHHHHhh
Confidence 8765332 22222 11111 01111 56788899999 9999999888764
No 98
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.19 E-value=8.8e-11 Score=120.91 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
-|+|||.|||||||++++|. +.+.. |+. .+++|.. |..+.... ..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt------~~~~~-va~-----------y~fTT~~--p~ig~v~~---------------~~ 203 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVS------AAKPK-IAD-----------YPFTTLV--PNLGVVRV---------------DD 203 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHh------cCCcc-ccC-----------CCCCccC--CEEEEEEe---------------CC
Confidence 48999999999999999998 54433 333 2223321 11111110 01
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccc--cHHHH-------HHHHhcc--CCceEEEEeC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQ--AAFDQ-------AQAFKQS--VSVGAVIVTK 250 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~--~~~~~-------~~~f~~~--~~~~~vIlTK 250 (495)
...++|+||||........ ..+ ..+.+.+..++.+++|+|++... +..+. +..+... ..+..+|+||
T Consensus 204 ~~~~~i~D~PGli~~a~~~-~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEG-AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred ceEEEEEeCCCcccCCccc-ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 3678999999985322110 111 22334444789999999987431 22211 2222221 2346899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+|..... ...... +.+. .+ ..+..++|++.|.| ++.|++++.+.+
T Consensus 283 ~DL~~~~--~~~~~~------------~~l~~~~--~~~vi~iSAktg~G-I~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLDEE--ELAELL------------KELKKAL--GKPVFPISALTGEG-LDELLYALAELL 328 (329)
T ss_pred ccCCChH--HHHHHH------------HHHHHHc--CCcEEEEEccCCcC-HHHHHHHHHHHh
Confidence 9985431 111111 1111 11 12456789999999 999999987764
No 99
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.19 E-value=2.7e-10 Score=105.59 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHh-ccCCceEEEEeCccCCCCcc-
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~~~~vIlTK~D~~~~~g- 258 (495)
++.+.|+||||..... ... ...+..+|.+++|+|++.+... ........ ...+ ..+|+||+|......
T Consensus 66 ~~~~~l~Dt~G~~~~~----~~~---~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 66 EYLLNLIDTPGHVDFS----YEV---SRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADPE 137 (179)
T ss_pred cEEEEEEECCCChhhH----HHH---HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCHH
Confidence 5778899999985322 112 2233378999999999865322 22222222 2334 589999999753211
Q ss_pred chhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.....+. ..+ + ++.+...+|+..|.| ++.|++++.+.++
T Consensus 138 ~~~~~~~~~~~--------------~-~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (179)
T cd01890 138 RVKQQIEDVLG--------------L-DPSEAILVSAKTGLG-VEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHHHhC--------------C-CcccEEEeeccCCCC-HHHHHHHHHhhCC
Confidence 1111111 011 1 112346799999999 9999999988764
No 100
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.18 E-value=3e-10 Score=108.50 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
.|+++|.+|+|||||+++|.....+.|....... .|... +.-.. ++.+..... .+.
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~----~E~~r-----g~Ti~~~~~-------------~~~ 61 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAP----EEKAR-----GITINTAHV-------------EYE 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCCh----hhhhc-----CccEEeeee-------------Eec
Confidence 5999999999999999999977655443221111 11110 00111 221111000 111
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.++..+.||||||.. .+..+ ....+..+|.+++|+|+..+... ...+..... ..+..++++||+|...
T Consensus 62 ~~~~~i~~iDtPG~~----~~~~~---~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 62 TANRHYAHVDCPGHA----DYIKN---MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred CCCeEEEEEECcCHH----HHHHH---HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 246788999999974 23232 33344478999999999865332 222333322 2333468899999853
No 101
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.18 E-value=1.3e-10 Score=109.37 Aligned_cols=141 Identities=22% Similarity=0.233 Sum_probs=84.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHH------HHhhhhh-----cCcceeccCC--CCChHHH
Q 011010 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------LKQNATK-----AKIPFYGSYT--ESDPVRI 171 (495)
Q Consensus 105 ~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dq------L~~~a~~-----~~i~~~~~~~--~~dp~~i 171 (495)
+.-+..|+||||++..||.+|+++|++|+++++|++.+...-- ++..... ..++...... +......
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPEL 82 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHH
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHH
Confidence 3446679999999999999999999999999999977654222 2111110 0000000000 0012234
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHH---HHHhccCCceEE
Q 011010 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQA---QAFKQSVSVGAV 246 (495)
Q Consensus 172 a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~---~~f~~~~~~~~v 246 (495)
..+.+..+....||+||||||+..... ....+..+|.+++++++.... ...... +.+....+..++
T Consensus 83 l~~~l~~l~~~~yD~iiiD~~~~~~~~---------~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~v 153 (195)
T PF01656_consen 83 LREILESLIKSDYDYIIIDTPPGLSDP---------VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGV 153 (195)
T ss_dssp HHHHHHHHHHTTSSEEEEEECSSSSHH---------HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEE
T ss_pred HHHHHHHhhhccccceeecccccccHH---------HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEE
Confidence 556666655556999999998865433 222333789999999987421 111222 222222346799
Q ss_pred EEeCccCC
Q 011010 247 IVTKMDGH 254 (495)
Q Consensus 247 IlTK~D~~ 254 (495)
|+||++..
T Consensus 154 v~N~v~~~ 161 (195)
T PF01656_consen 154 VINRVDPG 161 (195)
T ss_dssp EEEEETSC
T ss_pred EEeeeCCC
Confidence 99999765
No 102
>CHL00175 minD septum-site determining protein; Validated
Probab=99.18 E-value=4e-10 Score=113.25 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=85.6
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH--------------hh----------hhhc
Q 011010 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--------------QN----------ATKA 155 (495)
Q Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~--------------~~----------a~~~ 155 (495)
.++|+|+ |..|+||||++.+||.+|++.|++|++|++|+..+.....+. .. ....
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~ 94 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWK 94 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCC
Confidence 4678887 577999999999999999999999999999996543221110 00 0011
Q ss_pred CcceeccCCCCCh----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--c
Q 011010 156 KIPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--A 229 (495)
Q Consensus 156 ~i~~~~~~~~~dp----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~ 229 (495)
++.+......... .....+.+..+....||+||||||+..... . ..++..+|.+++|+++.... +
T Consensus 95 ~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~--~-------~~~l~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 95 NLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG--F-------INAIAPAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH--H-------HHHHHhcCeeEEEcCCChHHHHH
Confidence 2222222111111 112344455554337999999998864321 1 11222579999999987421 2
Q ss_pred HHHHHHHHhcc-CCceEEEEeCccCC
Q 011010 230 AFDQAQAFKQS-VSVGAVIVTKMDGH 254 (495)
Q Consensus 230 ~~~~~~~f~~~-~~~~~vIlTK~D~~ 254 (495)
.......+.+. ....++|+|+++..
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChh
Confidence 22223333321 23358999999753
No 103
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.17 E-value=4.5e-10 Score=104.26 Aligned_cols=124 Identities=21% Similarity=0.188 Sum_probs=76.1
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 104 I~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
|+|+ +..|+||||++.+||.+++++|++|++|++|++.+.....+ +..... ..+..++ +
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~~~---~~~~~~~----~------ 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLENRV---VYTLHDV----L------ 61 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccccC---Ccchhhc----c------
Confidence 4444 56799999999999999999999999999999765332211 000000 0000000 0
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
.-|+|||||||..... . ...+..+|.+++|+++.... ......+.+.. ..+..++|+|++|....
T Consensus 62 ~~d~viiD~p~~~~~~--~-------~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 62 AGDYILIDSPAGIERG--F-------ITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMV 129 (179)
T ss_pred cCCEEEEECCCCCcHH--H-------HHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccccc
Confidence 1199999998864322 1 11223679999999987432 22222333332 23457899999987543
No 104
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.16 E-value=1.8e-10 Score=110.92 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=40.7
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhc-cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.+..+.|+||||... +... +...+..+|.+++|+|++.+..... ....... ..+...+|+||+|...
T Consensus 75 ~~~~~~liDTpG~~~----~~~~---~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 75 PKRKFIIADTPGHEQ----YTRN---MVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred CCceEEEEECCcHHH----HHHH---HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 467899999999632 2222 2233448899999999986543221 1121111 1233466899999854
No 105
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.16 E-value=2.4e-10 Score=103.27 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCCCcchH-HHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccch
Q 011010 183 NCDLIIVDTSGRHKQEA-ALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~-~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ 260 (495)
+.++.|+||||...... ....++ ...... ..+|.+++|+|+..................+..+|+||+|........
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~ 120 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIK 120 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccch
Confidence 46789999999743221 111122 111221 378999999999864333333322232223468999999985332110
Q ss_pred hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 261 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 261 ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.. . +.+.... ..+...+|+..|.| +..+++++.+..
T Consensus 121 ~~-~-------------~~~~~~~-~~~~~~iSa~~~~~-~~~l~~~l~~~~ 156 (158)
T cd01879 121 ID-L-------------DKLSELL-GVPVVPTSARKGEG-IDELKDAIAELA 156 (158)
T ss_pred hh-H-------------HHHHHhh-CCCeEEEEccCCCC-HHHHHHHHHHHh
Confidence 00 0 0010000 12456789999999 999999887753
No 106
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.16 E-value=5.9e-10 Score=111.18 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=82.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch-----------hHHHHHh--------------hhhhcCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-----------AFDQLKQ--------------NATKAKI 157 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~-----------a~dqL~~--------------~a~~~~i 157 (495)
+|+|.|..||||||++.+||..|+++|+||++|++|++-.. ..+-+.. ..+..++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 58888999999999999999999999999999999985321 1111110 0011234
Q ss_pred ceeccCCCC------Ch-HHHHHHHHHHH-hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-
Q 011010 158 PFYGSYTES------DP-VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ- 228 (495)
Q Consensus 158 ~~~~~~~~~------dp-~~ia~~~l~~~-~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~- 228 (495)
.+....... .. .......++.+ ....||+|||||||...... +..++..+|.+++++.++...
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~--------~~~al~~aD~vlip~~p~~~~l 153 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG--------FAAPLNYADYALIVTDNDFDSI 153 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc--------chhhhhhcCEEEEEecCCcccH
Confidence 443221100 00 00001112221 13479999999998753221 111223689999999886421
Q ss_pred -cHHHH---HHHH--hccCCceEEEEeCccC
Q 011010 229 -AAFDQ---AQAF--KQSVSVGAVIVTKMDG 253 (495)
Q Consensus 229 -~~~~~---~~~f--~~~~~~~~vIlTK~D~ 253 (495)
..... ++.. +..+++.++|+|++|.
T Consensus 154 ~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 154 FAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 11112 2222 1234557899999985
No 107
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.16 E-value=1.3e-09 Score=104.93 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=85.0
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhH------------HHHH-------hhhh---hc
Q 011010 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAF------------DQLK-------QNAT---KA 155 (495)
Q Consensus 100 ~~~vI~ivG-~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~------------dqL~-------~~a~---~~ 155 (495)
..++|+|+| ..|+||||++.+||.+|++ .|++|++|++|++.+... +.+. .... ..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 356899986 5599999999999999986 699999999998764322 1111 1001 12
Q ss_pred CcceeccCCC-CChHH-----HHHHHHHHHhhcCC--cEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc
Q 011010 156 KIPFYGSYTE-SDPVR-----IAVEGVETFKKENC--DLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG 227 (495)
Q Consensus 156 ~i~~~~~~~~-~dp~~-----ia~~~l~~~~~~~~--dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g 227 (495)
++.+...... ..+.. ...+.+..++. .| |+||||||+....... ..+. ..+|.+++|+.+...
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~~~~~~-----~~l~---~~aD~viiV~~~~~~ 184 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLLVFSEA-----RALA---RLVGQIVLVVEEGRT 184 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCcchhHH-----HHHH---HhCCEEEEEEECCCC
Confidence 3333332221 11211 13444555543 45 9999999987643211 1111 157999999998732
Q ss_pred -c-cHHHHHHHHhccCCceEEEEe
Q 011010 228 -Q-AAFDQAQAFKQSVSVGAVIVT 249 (495)
Q Consensus 228 -~-~~~~~~~~f~~~~~~~~vIlT 249 (495)
. ...+....++ ..++.|+|+|
T Consensus 185 ~~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 185 TQEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred CHHHHHHHHHHhc-CCCeEEEEeC
Confidence 2 2333444444 5677899987
No 108
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.15 E-value=5.8e-10 Score=112.97 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=82.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH-----------HHHHh--------------hhhhcCcc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ--------------NATKAKIP 158 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~-----------dqL~~--------------~a~~~~i~ 158 (495)
|+|+|..||||||++.+||..|++.|+||++|++|++..... +-+.. ..+..++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 899999999999999999999999999999999998653221 11100 00012333
Q ss_pred eeccCCCCC-------hHHHHHHHHHHHhh-cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--
Q 011010 159 FYGSYTESD-------PVRIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-- 228 (495)
Q Consensus 159 ~~~~~~~~d-------p~~ia~~~l~~~~~-~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-- 228 (495)
+.+...... ........++.+.. +.||+|||||||...... +..++..+|.+++|+++....
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~a--------~~aal~~AD~viIp~~p~~~sl~ 154 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCGG--------FAAPLNYADYCIIITDNGFDALF 154 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceech--------hhhhhhcCCEEEEEecCCHHHHH
Confidence 332111100 00000111222211 379999999988643221 112233689999999886321
Q ss_pred cHHHH---HHHHhc--cCCceEEEEeCccC
Q 011010 229 AAFDQ---AQAFKQ--SVSVGAVIVTKMDG 253 (495)
Q Consensus 229 ~~~~~---~~~f~~--~~~~~~vIlTK~D~ 253 (495)
.+... ++.+.. .+...++|+|+.+.
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 155 AANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 12122 222221 23457899999984
No 109
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.15 E-value=5.8e-10 Score=105.06 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+++|.+||||||++++|+ +.+ +.-++. ...+++ .+.++.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~------------------ 67 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALT------NRKNLARTSK-----------TPGRTQ-LINFFE------------------ 67 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC-----------CCCcee-EEEEEe------------------
Confidence 3469999999999999999999 543 333333 111111 122111
Q ss_pred hhcCCcEEEEeCCCCCcc--h----HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCc
Q 011010 180 KKENCDLIIVDTSGRHKQ--E----AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~--~----~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~ 251 (495)
.+.++.|+||||.... . ......+..........+.+++|+|+....... .....+...-.+..+++||+
T Consensus 68 --~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~ 145 (196)
T PRK00454 68 --VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKA 145 (196)
T ss_pred --cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECc
Confidence 0357899999996321 1 111111122223332446788899977543322 22333332222358899999
Q ss_pred cCCCCccch--hHHHHhcCCCeEEeccCCCcccccc-cCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 252 DGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 252 D~~~~~g~~--ls~~~~~~~PI~fi~~Ge~i~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
|....+... ..... + .+.. ..+..++|++.|.| ++.+++.+.+.+.
T Consensus 146 Dl~~~~~~~~~~~~i~------------~---~l~~~~~~~~~~Sa~~~~g-i~~l~~~i~~~~~ 194 (196)
T PRK00454 146 DKLKKGERKKQLKKVR------------K---ALKFGDDEVILFSSLKKQG-IDELRAAIAKWLA 194 (196)
T ss_pred ccCCHHHHHHHHHHHH------------H---HHHhcCCceEEEEcCCCCC-HHHHHHHHHHHhc
Confidence 986432111 11111 0 1111 23456789999999 9999999988764
No 110
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.15 E-value=8e-10 Score=108.31 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=84.3
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------------HHHHHh---h-----hhhcCcce
Q 011010 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQ---N-----ATKAKIPF 159 (495)
Q Consensus 102 ~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------------~dqL~~---~-----a~~~~i~~ 159 (495)
++|+|++ ..|+||||++.+||..|+++|++|++|++|++.... .+.+.. + ....++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 3677775 669999999999999999999999999999975411 011110 0 01234443
Q ss_pred eccCCCCC---------hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-c
Q 011010 160 YGSYTESD---------PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-A 229 (495)
Q Consensus 160 ~~~~~~~d---------p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~ 229 (495)
........ ......+.+..+....+|+||||||+..... ...++..+|.+++|+.+.... .
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~---------~~~~l~~ad~vii~~~~~~~s~~ 152 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI---------TRQALAAADLVLVVVNADAACYA 152 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH---------HHHHHHhCCeEEEEeCCCHHHHH
Confidence 33221110 1122334455554445699999999853221 112223689999999986321 1
Q ss_pred HHH-HHHHHhc---cCCceEEEEeCccCCC
Q 011010 230 AFD-QAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 230 ~~~-~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
... ....+.. .....++|+|++|...
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 153 TLHQQALALFAGSGPRIGPHFLINQFDPAR 182 (246)
T ss_pred HHHHHHHHHhhcccccccceEEeeccCcch
Confidence 111 2222222 1122579999998643
No 111
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.14 E-value=2.8e-10 Score=104.30 Aligned_cols=156 Identities=20% Similarity=0.222 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++|. +.+.. ++. .+.++. .+. ..... ..
T Consensus 2 ~i~~~G~~~~GKssli~~l~------~~~~~-~~~-----------~~~~t~-~~~-~~~~~----------------~~ 45 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT------RAKPE-VAP-----------YPFTTK-SLF-VGHFD----------------YK 45 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh------cCCCc-cCC-----------CCCccc-cee-EEEEc----------------cC
Confidence 58999999999999999998 54331 111 011111 000 00000 12
Q ss_pred CCcEEEEeCCCCCcch---HHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-----HHHHHHHHhcc--CCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQE---AALFEEMRQVSEATVNPDLVIFVMDSSIGQA-----AFDQAQAFKQS--VSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~---~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-----~~~~~~~f~~~--~~~~~vIlTK~D 252 (495)
+..+.|+||||..... ....+. ..+......+|.+++|+|++.... .......+... ..+..+|+||+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~D 124 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEM-QAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID 124 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHH-HHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccc
Confidence 5688999999974211 000100 111111113688999999974321 11122222222 234589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... .... +..... ...+...+|+..|.| ++.+++++.+.+
T Consensus 125 l~~~~~--~~~~-------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (168)
T cd01897 125 LLTFED--LSEI-------------EEEEEL-EGEEVLKISTLTEEG-VDEVKNKACELL 167 (168)
T ss_pred cCchhh--HHHH-------------HHhhhh-ccCceEEEEecccCC-HHHHHHHHHHHh
Confidence 854321 1111 111111 123456789999999 999999987654
No 112
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.13 E-value=2.2e-10 Score=102.42 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=79.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++|. +.+.. +.+ + ..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~------~~~~~------~~~----------t-~~~~------------------------ 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ------GEEIL------YKK----------T-QAVE------------------------ 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc------CCccc------ccc----------c-eeEE------------------------
Confidence 48999999999999999998 44321 000 0 1111
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCccch
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ 260 (495)
+...++||||........... +...+..+|.+++|+|++...... .....+. .+..+|+||+|+..+.. .
T Consensus 35 -~~~~~iDt~G~~~~~~~~~~~---~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~---~p~ilv~NK~Dl~~~~~-~ 106 (142)
T TIGR02528 35 -YNDGAIDTPGEYVENRRLYSA---LIVTAADADVIALVQSATDPESRFPPGFASIFV---KPVIGLVTKIDLAEADV-D 106 (142)
T ss_pred -EcCeeecCchhhhhhHHHHHH---HHHHhhcCCEEEEEecCCCCCcCCChhHHHhcc---CCeEEEEEeeccCCccc-C
Confidence 112689999973222222222 223355899999999997544321 1112111 24588899999854321 1
Q ss_pred hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHH
Q 011010 261 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 261 ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
..... +.... ..+.+...+|+..|.| ++.|++++.
T Consensus 107 ~~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~ 141 (142)
T TIGR02528 107 IERAK------------ELLET-AGAEPIFEISSVDEQG-LEALVDYLN 141 (142)
T ss_pred HHHHH------------HHHHH-cCCCcEEEEecCCCCC-HHHHHHHHh
Confidence 11111 00111 1122446789999999 998888763
No 113
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.12 E-value=9.5e-10 Score=109.81 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-----------HHHHHh--------------hhhhcC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ--------------NATKAK 156 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-----------~dqL~~--------------~a~~~~ 156 (495)
++|+|+|..||||||++.+||.+|+++|++|++|++|++...+ .+-+.. ..+..+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 82 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYNG 82 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCCC
Confidence 5788889999999999999999999999999999999853221 111110 001124
Q ss_pred cceeccCCCC-----C--hHHHHHHHHHHH-hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-
Q 011010 157 IPFYGSYTES-----D--PVRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG- 227 (495)
Q Consensus 157 i~~~~~~~~~-----d--p~~ia~~~l~~~-~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g- 227 (495)
+.+.+..... . ........+..+ ..+.||+|||||+|...... +..++..+|.+++++.+...
T Consensus 83 l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~--------~~~~l~~AD~viip~~~~~~s 154 (270)
T PRK13185 83 VDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG--------FAAPLQYADYALIVTANDFDS 154 (270)
T ss_pred cEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc--------ccchhhhCcEEEEEecCchhh
Confidence 4443221100 0 000011112221 13579999999988653221 11112268999999987532
Q ss_pred cc----HHHHHHHH--hccCCceEEEEeCccC
Q 011010 228 QA----AFDQAQAF--KQSVSVGAVIVTKMDG 253 (495)
Q Consensus 228 ~~----~~~~~~~f--~~~~~~~~vIlTK~D~ 253 (495)
-. ..+.+... +..+++.++|+|+.+.
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 11 11112211 2234557899999773
No 114
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.12 E-value=7e-10 Score=107.53 Aligned_cols=137 Identities=26% Similarity=0.315 Sum_probs=86.5
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-HHHHH--hhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLK--QNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 103 vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-~dqL~--~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
+|.++ ...|+||||++..||..|+.+|.+|+|+++|+.||-+ |.+.. ..+-..+++++. .+-......+++.
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~----~~e~~~l~~~~e~ 78 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYE----ADELTILEDAYEA 78 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEe----ccchhhHHHHHHH
Confidence 56665 5569999999999999999999999999999999855 22211 111112233333 1223455666777
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHH-------hccCCceEEEEe
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAF-------KQSVSVGAVIVT 249 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f-------~~~~~~~~vIlT 249 (495)
+...+||+|||||+|..+.... .++..+|.|++.+-.+.. .++......+ ...+ +..|++|
T Consensus 79 a~~~~~d~VlvDleG~as~~~~---------~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~i-p~~Vl~T 148 (231)
T PF07015_consen 79 AEASGFDFVLVDLEGGASELND---------YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDI-PAAVLFT 148 (231)
T ss_pred HHhcCCCEEEEeCCCCCchhHH---------HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCC-CeeEEEe
Confidence 7667899999999997543211 122268988877765531 1122222211 1123 4689999
Q ss_pred CccC
Q 011010 250 KMDG 253 (495)
Q Consensus 250 K~D~ 253 (495)
++.-
T Consensus 149 r~~~ 152 (231)
T PF07015_consen 149 RVPA 152 (231)
T ss_pred cCCc
Confidence 9974
No 115
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.12 E-value=9.3e-10 Score=109.47 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++|+|+|..||||||++.+||.+|+++|++|++|++|++..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 46888899999999999999999999999999999999753
No 116
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.12 E-value=8.1e-10 Score=104.73 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHh-ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~~~~vIlTK~D~~~ 255 (495)
++.+.|+||||.... ..... .....+|.+++|+|++.+... ........ ...+ ..+|+||+|...
T Consensus 64 ~~~~~l~DtpG~~~~----~~~~~---~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~ 131 (194)
T cd01891 64 DTKINIVDTPGHADF----GGEVE---RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPD 131 (194)
T ss_pred CEEEEEEECCCcHHH----HHHHH---HHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 577899999997432 11222 223378999999999864321 11222222 2344 589999999853
No 117
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.12 E-value=6.4e-10 Score=111.54 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=105.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+|+|||||+++|......- .++..|+.... ..|. .+.....++..... ...+...+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~~~---~~D~-~~~E~~rgiti~~~-------------~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGGGA---TMDF-MEQERERGITIQSA-------------ATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCCcc---ccCC-CccccCCCcCeecc-------------EEEEEECC
Confidence 8999999999999999998543211 12222221000 0000 00001111111110 00112347
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCC-Cccch
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA-KGGGA 260 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~-~~g~~ 260 (495)
+.+.||||||... +..+ ...++..+|.+++|+|+..+.... ...........+..+++||+|... .....
T Consensus 64 ~~i~liDTPG~~d----f~~~---~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~ 136 (270)
T cd01886 64 HRINIIDTPGHVD----FTIE---VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRV 136 (270)
T ss_pred EEEEEEECCCcHH----HHHH---HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHH
Confidence 8899999999753 2222 233444679999999998764332 223332322234589999999853 22222
Q ss_pred hHHHH-hcCCC----eEEeccCCCccc---ccccCccchhhhccCC----CC--------cHHHHHHHHHhCCCCCchHH
Q 011010 261 LSAVA-ATKSP----VIFIGTGEHMDE---FEVFDVKPFVSRLLGM----GD--------WSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 261 ls~~~-~~~~P----I~fi~~Ge~i~~---l~~f~p~~~vS~l~G~----Gd--------i~~L~e~i~~~~~~~~~~~~ 320 (495)
+..+. ..+.+ +..++.+..+.. +-.-....+ +.-.|. .+ +..+-+.+.+.+- +.-.++
T Consensus 137 ~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~-~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~va-e~dd~L 214 (270)
T cd01886 137 VEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYW-DGELGEKIEETEIPEDLLEEAEEAREELIETLA-EFDDEL 214 (270)
T ss_pred HHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEec-ccCCCceeEEecCCHHHHHHHHHHHHHHHHHHh-cCCHHH
Confidence 33222 22221 122333333211 110000000 000000 01 1222233333332 223568
Q ss_pred hhccccc-hhcHHHHHHHHHHHhccCC
Q 011010 321 LQKLSEG-NFTLRIMYEQFQNILKMGP 346 (495)
Q Consensus 321 ~~~~~~~-~f~~~d~~~ql~~~~k~g~ 346 (495)
++|++.+ +++.+++.+.|+.-...|.
T Consensus 215 ~e~yl~~~~~~~~el~~~l~~~~~~~~ 241 (270)
T cd01886 215 MEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCc
Confidence 8888887 8999999999998666664
No 118
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.12 E-value=3.7e-09 Score=105.83 Aligned_cols=142 Identities=14% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH------------hh---------hhhcCc
Q 011010 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------QN---------ATKAKI 157 (495)
Q Consensus 100 ~~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~------------~~---------a~~~~i 157 (495)
.+++|+|+ +.+|+||||++..||..+++.|++|++|++|+.++.....+. .. ....++
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 45678887 556999999999999999999999999999987765322111 00 001233
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--cc
Q 011010 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QA 229 (495)
Q Consensus 158 ~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~ 229 (495)
.+.+... ..++..+ ....+..+ ++.|||||||||+.....+... +.. .+|.+++|+.+... .+
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViiD~pp~~~~~d~~~-----~~~---~~d~vilV~~~~~t~~~~ 252 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQI-----VAT---RARGTLIVSRVNETRLHE 252 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCcccccHHHH-----HHH---hCCeEEEEEECCCCCHHH
Confidence 3333222 1233222 23445554 4589999999998754322110 111 57999999997532 22
Q ss_pred HHHHHHHHhc-cCCceEEEEeC
Q 011010 230 AFDQAQAFKQ-SVSVGAVIVTK 250 (495)
Q Consensus 230 ~~~~~~~f~~-~~~~~~vIlTK 250 (495)
.....+.+.. ..++.|+|+|+
T Consensus 253 ~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 3333444443 35678999995
No 119
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.11 E-value=9.1e-10 Score=103.64 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++++. +.++..+.+ +..+ .+.... .
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~------~~~~~~~~~-t~~~-------------~~~~~~-------------------~ 58 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLK------NDRLAQHQP-TQHP-------------TSEELA-------------------I 58 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHh------cCCCcccCC-cccc-------------ceEEEE-------------------E
Confidence 469999999999999999998 554432211 0000 000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
.++.+.++||||...... + .......+|.+++|+|++..... ......+.+ .-.+..+|+||+|..
T Consensus 59 ~~~~~~~~D~~G~~~~~~-~------~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 59 GNIKFTTFDLGGHQQARR-L------WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred CCEEEEEEECCCCHHHHH-H------HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 257889999999743221 1 11233488999999999753211 111111211 123469999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.... .-.+....+.+=.....++. .. .......+|++.|.| ++.+++++.+.
T Consensus 132 ~~~~-~~~i~~~l~l~~~~~~~~~~--~~-~~~~i~~~Sa~~~~g-~~~~~~wl~~~ 183 (184)
T smart00178 132 YAAS-EDELRYALGLTNTTGSKGKV--GV-RPLEVFMCSVVRRMG-YGEGFKWLSQY 183 (184)
T ss_pred CCCC-HHHHHHHcCCCccccccccc--CC-ceeEEEEeecccCCC-hHHHHHHHHhh
Confidence 2211 11122222211000000000 00 112246789999999 99999998754
No 120
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.11 E-value=9.9e-10 Score=106.54 Aligned_cols=146 Identities=20% Similarity=0.145 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc-------chhHHHHH---------hhhhhc-----------
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------AGAFDQLK---------QNATKA----------- 155 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R-------~~a~dqL~---------~~a~~~----------- 155 (495)
++++.|.+|+||||++.++|.++++.|++|.+|++|+.+ ++-.+.+. .+..+.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 378889999999999999999999999999999999988 33333222 011110
Q ss_pred --Cccee-ccCCCCChHHH--HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcC--CCEEEEEeeCCcc-
Q 011010 156 --KIPFY-GSYTESDPVRI--AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVN--PDLVIFVMDSSIG- 227 (495)
Q Consensus 156 --~i~~~-~~~~~~dp~~i--a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~--~d~vllVvDa~~g- 227 (495)
+..+. ......++.+. ..+.++.+....||+||||||+..+..+.+ +...+.. .|.+++|+.+...
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l------~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL------VRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH------HHHHccCCCceEEEEEeCCCccH
Confidence 00000 00111222222 222333444334999999999864332222 1122213 4789999998632
Q ss_pred -ccHHHHHHHHhcc-CCceEEEEeCccCC
Q 011010 228 -QAAFDQAQAFKQS-VSVGAVIVTKMDGH 254 (495)
Q Consensus 228 -~~~~~~~~~f~~~-~~~~~vIlTK~D~~ 254 (495)
.+.......++.. .++.++|+|++...
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 1223333444332 45679999998753
No 121
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.11 E-value=7.2e-10 Score=102.31 Aligned_cols=145 Identities=20% Similarity=0.234 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCC-------CCChHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-------ESDPVRIAVEG 175 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~-------~~dp~~ia~~~ 175 (495)
++.++|..|+||||++.+++... .|.+++++..|....+-..++.. ..+.+++.... ..+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~~~---~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQLVV---DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHHHh---CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 68899999999999999998653 47899998887644433222221 12222222211 12223222222
Q ss_pred HHHH--hhcCCcEEEEeCCCCCcchHHHHHHH--HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC-CceEEEEeC
Q 011010 176 VETF--KKENCDLIIVDTSGRHKQEAALFEEM--RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTK 250 (495)
Q Consensus 176 l~~~--~~~~~dvviIDTaG~~~~~~~l~~el--~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~~~~vIlTK 250 (495)
+..+ ....+|+|+|||||.+.... +.+.+ ..........|.+++|+|+.......+....+.+.+ .-..+|+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 2332 23479999999999987653 33332 222222237889999999975433222112222211 126889999
Q ss_pred ccC
Q 011010 251 MDG 253 (495)
Q Consensus 251 ~D~ 253 (495)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 122
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.10 E-value=1.7e-09 Score=113.11 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=87.1
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHh---hhh-hcC---cceecc---------
Q 011010 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---NAT-KAK---IPFYGS--------- 162 (495)
Q Consensus 100 ~~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~---~a~-~~~---i~~~~~--------- 162 (495)
..++|+|+ |..|+||||++.+||..|++.|+||++||+|+|.+.....+.. ..+ ..+ +|....
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~ 185 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGY 185 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHH
Confidence 34677776 8889999999999999999999999999999999865333311 000 000 010000
Q ss_pred -CCCCC--------hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHH
Q 011010 163 -YTESD--------PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAF 231 (495)
Q Consensus 163 -~~~~d--------p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~ 231 (495)
....+ ......+.+....++.|||+|||||+-.. +..+ .+...+ .+|.+++|+.+... .++.
T Consensus 186 l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~l-----~~~~l~-aad~viiV~tp~~~s~~da~ 258 (369)
T PRK11670 186 LVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQL-----TLAQNI-PVTGAVVVTTPQDIALIDAK 258 (369)
T ss_pred hcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHHH-----HHhhhc-cCCeEEEEecCchhHHHHHH
Confidence 00000 11222333332334579999999987532 2111 011222 57888888876421 1233
Q ss_pred HHHHHHhc-cCCceEEEEeCccCC
Q 011010 232 DQAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 232 ~~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
.....+.+ .+++.++|+|+.+..
T Consensus 259 ~~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 259 KGIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred HHHHHHhccCCCeEEEEEcCCccc
Confidence 33444433 356789999998754
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.10 E-value=6.1e-10 Score=101.97 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=61.0
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh-----ccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK-----QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~-----~~~~~~~vIlTK~D~~ 254 (495)
++.+.++||||...... + .......+|.+++|+|++....... ....+. ...| ..+|+||+|..
T Consensus 49 ~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~ 120 (167)
T cd04160 49 NARLKFWDLGGQESLRS-----L--WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLP 120 (167)
T ss_pred CEEEEEEECCCChhhHH-----H--HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccc
Confidence 57889999999743221 1 1223448899999999875432211 112111 1234 68999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHH
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.... .-....... .....+. ...+...+|++.|.| ++++++++.+
T Consensus 121 ~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~ 166 (167)
T cd04160 121 DALS-VEEIKEVFQ---------DKAEEIGRRDCLVLPVSALEGTG-VREGIEWLVE 166 (167)
T ss_pred cCCC-HHHHHHHhc---------cccccccCCceEEEEeeCCCCcC-HHHHHHHHhc
Confidence 4311 111111111 0000111 112456799999999 9999988754
No 124
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.09 E-value=6.2e-10 Score=105.34 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=67.1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHh-ccCCceEEEEeCccCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~~~~vIlTK~D~~~~~g 258 (495)
.++.+.|+||||.. .+. ..+......+|.+++|+|+..+.... +...... ... +..+|+||+|......
T Consensus 66 ~~~~~~i~DtpG~~----~~~---~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~~ 137 (192)
T cd01889 66 ENLQITLVDCPGHA----SLI---RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCK-KLIVVLNKIDLIPEEE 137 (192)
T ss_pred cCceEEEEECCCcH----HHH---HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEECcccCCHHH
Confidence 36889999999973 222 22333334689999999998654321 1111111 123 3589999999853321
Q ss_pred --chhHHHHh-cCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 --GALSAVAA-TKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 --~~ls~~~~-~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
..+..... .+ ..+... ....+..++|++.|.| ++.|.+++.+.++.
T Consensus 138 ~~~~~~~~~~~l~---------~~~~~~~~~~~~vi~iSa~~g~g-i~~L~~~l~~~~~~ 187 (192)
T cd01889 138 RERKIEKMKKKLQ---------KTLEKTRFKNSPIIPVSAKPGGG-EAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHH---------HHHHhcCcCCCCEEEEeccCCCC-HHHHHHHHHhcccc
Confidence 11111110 00 001000 1234567899999999 99999999988753
No 125
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.08 E-value=1.2e-09 Score=108.97 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+|++.|..||||||++.+||.+|+++|+||++|++|++-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 477889999999999999999999999999999999853
No 126
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.08 E-value=1.3e-09 Score=99.02 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=82.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+|+|++||||||+++++. +.+..- . .| +. +..+..... ...
T Consensus 2 i~i~G~~~~GKTsl~~~~~------~~~~~~--~---~~---------t~--~~~~~~~~~----------------~~~ 43 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK------HAELVT--T---IP---------TV--GFNVEMLQL----------------EKH 43 (160)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCccc--c---cC---------cc--CcceEEEEe----------------CCc
Confidence 7899999999999999998 444311 0 01 00 111111000 124
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHH-Hhc---cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQA-FKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~-f~~---~~~~~~vIlTK~D~~~~ 256 (495)
+.+.++||||...... + .......+|.+++|+|++....... .... +.. .-.+..+|+||+|....
T Consensus 44 ~~l~i~D~~G~~~~~~-----~--~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 44 LSLTVWDVGGQEKMRT-----V--WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred eEEEEEECCCCHhHHH-----H--HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 6789999999743221 1 1122347899999999986432111 1111 111 12345999999998532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ...+....+. +.+.. +...+...+|+..|.| ++.+++++..
T Consensus 117 ~~-~~~i~~~~~~--------~~~~~-~~~~~~~~~Sa~~~~g-v~~~~~~i~~ 159 (160)
T cd04156 117 LT-AEEITRRFKL--------KKYCS-DRDWYVQPCSAVTGEG-LAEAFRKLAS 159 (160)
T ss_pred cC-HHHHHHHcCC--------cccCC-CCcEEEEecccccCCC-hHHHHHHHhc
Confidence 11 1111111110 11100 0111345689999999 9999988753
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.07 E-value=4.2e-10 Score=99.88 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++|. +.+ .....+ +..+..-........ ..
T Consensus 3 ki~~~G~~~~GKstl~~~l~------~~~-~~~~~~-----------~~~~~~~~~~~~~~~----------------~~ 48 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLL------GNK-FITEYK-----------PGTTRNYVTTVIEED----------------GK 48 (161)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-CcCcCC-----------CCceeeeeEEEEEEC----------------CE
Confidence 59999999999999999998 544 222211 111111111000000 01
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhc-cCCceEEEEeCccCCCCccch
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 260 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g~~ 260 (495)
.+.+.++||||..................+...|.+++|+|+.... ........+.. ..+ ..+|+||+|..... .
T Consensus 49 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~--~ 125 (161)
T TIGR00231 49 TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVP-IILVGNKIDLRDAK--L 125 (161)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCc-EEEEEEcccCCcch--h
Confidence 2778999999954332211111121211222334444444443222 11122222222 233 58999999985432 1
Q ss_pred hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHH
Q 011010 261 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 261 ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
..... ..+..+ ...+...+|+..|.| +..+++.+.
T Consensus 126 ~~~~~------------~~~~~~-~~~~~~~~sa~~~~g-v~~~~~~l~ 160 (161)
T TIGR00231 126 KTHVA------------FLFAKL-NGEPIIPLSAETGKN-IDSAFKIVE 160 (161)
T ss_pred hHHHH------------HHHhhc-cCCceEEeecCCCCC-HHHHHHHhh
Confidence 11111 111111 233457789999999 888888764
No 128
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.07 E-value=3.8e-09 Score=103.99 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=80.0
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCC-Ccc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA-KGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~-~~g 258 (495)
.++.+.|+||||..... .+. ..++..+|.+++|+|++.+.... ...........+..+++||+|... ...
T Consensus 62 ~~~~i~liDTPG~~~f~----~~~---~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~ 134 (237)
T cd04168 62 EDTKVNLIDTPGHMDFI----AEV---ERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLE 134 (237)
T ss_pred CCEEEEEEeCCCccchH----HHH---HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHH
Confidence 47789999999985322 222 22333679999999998764321 122222222223589999999853 223
Q ss_pred chhHHH-HhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHhhccccc-hhcHHHHHH
Q 011010 259 GALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG-NFTLRIMYE 336 (495)
Q Consensus 259 ~~ls~~-~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~~-~f~~~d~~~ 336 (495)
..+..+ ...+.++..+..-..++.+. ..... ...|+|.+.+. -.+++++.+.+ +++-+++++
T Consensus 135 ~~~~~i~~~~~~~~~~~~~p~~~~~~~---------~~~~~--~~~l~e~vae~-----dd~l~e~yl~~~~~~~~el~~ 198 (237)
T cd04168 135 KVYQEIKEKLSSDIVPMQKVGLAPNIC---------ETNEI--DDEFWETLAEG-----DDELLEKYLEGGPIEELELDN 198 (237)
T ss_pred HHHHHHHHHHCCCeEEEECCcEeeeee---------eeeec--cHHHHHHHhcC-----CHHHHHHHhCCCCCCHHHHHH
Confidence 333322 33344333332111111100 00001 25666666553 24577777777 899999999
Q ss_pred HHHHHhccCC
Q 011010 337 QFQNILKMGP 346 (495)
Q Consensus 337 ql~~~~k~g~ 346 (495)
.|+.....|.
T Consensus 199 ~l~~~~~~~~ 208 (237)
T cd04168 199 ELSARIAKRK 208 (237)
T ss_pred HHHHHHHhCC
Confidence 9998766664
No 129
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.06 E-value=9.1e-10 Score=102.08 Aligned_cols=149 Identities=19% Similarity=0.136 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||++++|. +..+.- +.+ + .+..+.... .
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~------~~~~~~-----~~~---------t--~g~~~~~~~-----------------~ 55 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL------GEDIDT-----ISP---------T--LGFQIKTLE-----------------Y 55 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCCC-----cCC---------c--cccceEEEE-----------------E
Confidence 468999999999999999998 442211 111 0 011111000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHH-hc---cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAF-KQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f-~~---~~~~~~vIlTK~D~~ 254 (495)
+++.+.++||||...... + ....+..+|.+++|+|++....... ....+ .. ...+..+|+||+|..
T Consensus 56 ~~~~l~l~D~~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRP-----Y--WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred CCEEEEEEECCCCHHHHH-----H--HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 256789999999743211 1 1223448899999999976422111 11111 11 123468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHH
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
... ..-.+....+ .... ....+...+|+..|.| ++.+++++.
T Consensus 129 ~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~ 171 (173)
T cd04154 129 GAL-SEEEIREALE-----------LDKISSHHWRIQPCSAVTGEG-LLQGIDWLV 171 (173)
T ss_pred cCC-CHHHHHHHhC-----------ccccCCCceEEEeccCCCCcC-HHHHHHHHh
Confidence 321 1111110000 0000 1122456789999999 999998874
No 130
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.06 E-value=1.1e-09 Score=107.58 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|+|||||||+++.|+ |.+..+ .. .++++....+ +... ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt------g~~~~v-~~-----------~~~tT~~~~~--g~~~----------------~~ 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT------NTKSEV-AA-----------YEFTTLTCVP--GVLE----------------YK 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCccc-cC-----------CCCccccceE--EEEE----------------EC
Confidence 48999999999999999999 654321 11 1122211111 1000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG 227 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g 227 (495)
+.++.++||||.....................+|.+++|+|++..
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 567889999997433211111112334455589999999998753
No 131
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.06 E-value=6.3e-09 Score=104.01 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=81.3
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCc-c
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG-G 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~-g 258 (495)
.++++.||||||... +..+ ...++..+|.+++|+|++.+.... .........-.+..+++||+|..... .
T Consensus 62 ~~~~i~liDtPG~~~----f~~~---~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 62 KGHKINLIDTPGYAD----FVGE---TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred CCEEEEEEECcCHHH----HHHH---HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 468899999999742 1122 222333679999999998764322 22222222222358899999986432 2
Q ss_pred chhHHH-HhcCCCeEEe----ccCCCcccccccCccchh--hh-----ccCCC-Cc----HHHHHHHHHhCCCCCchHHh
Q 011010 259 GALSAV-AATKSPVIFI----GTGEHMDEFEVFDVKPFV--SR-----LLGMG-DW----SGFMDKIHEVVPMDQQPELL 321 (495)
Q Consensus 259 ~~ls~~-~~~~~PI~fi----~~Ge~i~~l~~f~p~~~v--S~-----l~G~G-di----~~L~e~i~~~~~~~~~~~~~ 321 (495)
..+..+ ...+.|+..+ ..|+.+..+-..-..... +. ..... +. ...-+.+.+.+- +.-++++
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a-~~dd~l~ 213 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVA-ETDDELM 213 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHh-hCCHHHH
Confidence 233333 2345544332 345554332111100000 00 00000 01 112222222222 2235688
Q ss_pred hccccc-hhcHHHHHHHHHHHhccCC
Q 011010 322 QKLSEG-NFTLRIMYEQFQNILKMGP 346 (495)
Q Consensus 322 ~~~~~~-~f~~~d~~~ql~~~~k~g~ 346 (495)
++++.+ +++-+++...++....-|.
T Consensus 214 e~yl~~~~~~~~~l~~~l~~~~~~~~ 239 (268)
T cd04170 214 EKYLEGGELTEEELHAGLRRALRAGL 239 (268)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 888876 8999999999988666664
No 132
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.06 E-value=7.8e-10 Score=107.94 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=100.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhh--hcCccee---ccCCCCChHHHHHHHHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--KAKIPFY---GSYTESDPVRIAVEGVET 178 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~--~~~i~~~---~~~~~~dp~~ia~~~l~~ 178 (495)
|+++|.+|+||||+++.+.......|...+.+..|.++............ ..+.... ..+...... ..+.+.
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~ 78 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS---ESDIEI 78 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc---ccccee
Confidence 78899999999999999996544446656666555433211100000000 0000000 000000000 000111
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh--cCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT--VNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i--~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~ 253 (495)
+...++.+.||||||.. .+...+ ...+ ..+|.+++|+|+..+.... ..+..... ..+ ..+|+||+|.
T Consensus 79 ~~~~~~~i~liDtpG~~----~~~~~~---~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~ 150 (224)
T cd04165 79 CEKSSKLVTFIDLAGHE----RYLKTT---LFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDL 150 (224)
T ss_pred eeeCCcEEEEEECCCcH----HHHHHH---HHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 22346789999999963 222222 2222 2689999999998654322 22333332 344 5899999998
Q ss_pred CCCc--cchhHHHH-hcC------CCeEEeccCCCcc-----cccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 254 HAKG--GGALSAVA-ATK------SPVIFIGTGEHMD-----EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~--g~~ls~~~-~~~------~PI~fi~~Ge~i~-----~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..+. ...+..+. ... .|.......+-+. ......|.+.+|+.+|.| ++.|.+.+...
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G-i~~L~~~L~~l 221 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG-LDLLHAFLNLL 221 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC-HHHHHHHHHhc
Confidence 5432 11222111 111 2332222111111 122344778899999999 88888776543
No 133
>PRK11519 tyrosine kinase; Provisional
Probab=99.06 E-value=3.8e-09 Score=119.60 Aligned_cols=147 Identities=19% Similarity=0.254 Sum_probs=95.3
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH---------------------hhhhhcC
Q 011010 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---------------------QNATKAK 156 (495)
Q Consensus 99 ~~~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~---------------------~~a~~~~ 156 (495)
.++++|+|++ .+|+||||++.+||..|+..|++|++|++|+++|.....+. ..+...+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3467899998 66999999999999999999999999999998774322221 1111234
Q ss_pred cceeccC-CCCChHHHH-----HHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-ccc
Q 011010 157 IPFYGSY-TESDPVRIA-----VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI-GQA 229 (495)
Q Consensus 157 i~~~~~~-~~~dp~~ia-----~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~-g~~ 229 (495)
+.+.+.. ...+|.++. .+.++.+ ...||+||||||+.....+... +.. .+|.+++|+.+.. ...
T Consensus 604 l~~lp~g~~~~~~~ell~s~~~~~ll~~l-~~~yD~ViiDtpP~~~v~Da~~-----l~~---~~d~~l~Vvr~~~t~~~ 674 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWA-SKNYDLVLIDTPPILAVTDAAI-----VGR---HVGTTLMVARYAVNTLK 674 (719)
T ss_pred EEEEeCCCCCCCHHHHhhHHHHHHHHHHH-HhcCCEEEEeCCCcccchHHHH-----HHH---HCCeEEEEEeCCCCCHH
Confidence 4444322 233454432 2334444 3589999999999865443221 112 5799999998753 333
Q ss_pred HHH-HHHHHhc-cCCceEEEEeCccCC
Q 011010 230 AFD-QAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 230 ~~~-~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
... ....+.+ ..++.|+|+|+++..
T Consensus 675 ~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 675 EVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 332 3334433 357789999999754
No 134
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.06 E-value=2.5e-09 Score=97.15 Aligned_cols=148 Identities=21% Similarity=0.162 Sum_probs=81.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCc--eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWK--PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~k--VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
|+++|++||||||++++|. +.+ +.-+.+ . .+..+.. . ..
T Consensus 2 i~~vG~~~~GKTsl~~~l~------~~~~~~~~~~~-----------t-----~g~~~~~-~----------------~~ 42 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLK------PENAQSQIIVP-----------T-----VGFNVES-F----------------EK 42 (162)
T ss_pred EEEECCCCCCHHHHHHHHc------ccCCCcceecC-----------c-----cccceEE-E----------------EE
Confidence 7899999999999999998 321 111111 0 0111000 0 01
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh------ccCCceEEEEeCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK------QSVSVGAVIVTKMD 252 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~------~~~~~~~vIlTK~D 252 (495)
.++.+.++||||...... + .......+|.+++|+|++..... ......+. ..-.+..+|+||+|
T Consensus 43 ~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRG-L------WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred CCEEEEEEECCCCHhhHH-H------HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence 256789999999743221 1 11233488999999999854321 11122111 11124689999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccc-cCccchhhhccCCCCcHHHHHHHHH
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
...... ........+ +..+.. ..+...+|+..|.| ++.+++++.+
T Consensus 116 l~~~~~-~~~~~~~l~-----------~~~~~~~~~~~~~~Sa~~g~g-v~~~~~~l~~ 161 (162)
T cd04157 116 LPDALT-AVKITQLLG-----------LENIKDKPWHIFASNALTGEG-LDEGVQWLQA 161 (162)
T ss_pred ccCCCC-HHHHHHHhC-----------CccccCceEEEEEeeCCCCCc-hHHHHHHHhc
Confidence 854311 111111111 111111 11235689999999 9999998754
No 135
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.05 E-value=2.3e-09 Score=96.95 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=84.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCC-ceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~-kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
|+++|.+||||||+++.|+ +. ...-.+. ....+. .+.++. .
T Consensus 2 i~l~G~~g~GKTtL~~~l~------~~~~~~~~~~-----------~~~~t~-~~~~~~--------------------~ 43 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT------NRKKLARTSK-----------TPGKTQ-LINFFN--------------------V 43 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCceeeecC-----------CCCcce-eEEEEE--------------------c
Confidence 7899999999999999998 32 2222222 111111 111111 0
Q ss_pred CCcEEEEeCCCCCcc------hHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-c-HHHHHHHHhccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQ------EAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-A-AFDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~------~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~-~~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
...++++||||.... .......+..........+.+++|+|..... . .....+.+.....+..+|+||+|..
T Consensus 44 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 227899999996432 1112122222233222457788999987542 2 1223333333323458899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ......... ..+.......+..++|++.+.| +..+++.+.+++
T Consensus 124 ~~~~-~~~~~~~~~---------~~l~~~~~~~~~~~~Sa~~~~~-~~~l~~~l~~~~ 170 (170)
T cd01876 124 KKSE-LAKALKEIK---------KELKLFEIDPPIILFSSLKGQG-IDELRALIEKWL 170 (170)
T ss_pred ChHH-HHHHHHHHH---------HHHHhccCCCceEEEecCCCCC-HHHHHHHHHHhC
Confidence 4321 111110000 1111012223455789999999 999999887753
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.05 E-value=1.3e-09 Score=100.42 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +..+..... . .++.+....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~------~~~~~~~~~-----------t-----~g~~~~~i~----------------- 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA------SEDISHITP-----------T-----QGFNIKTVQ----------------- 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh------cCCCcccCC-----------C-----CCcceEEEE-----------------
Confidence 4569999999999999999998 543221111 0 011111100
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHH-hc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAF-KQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f-~~---~~~~~~vIlTK~D~ 253 (495)
..+.++.++||||...... . ....+..+|.+++|+|++...... .....+ .. .-.+..+++||+|.
T Consensus 55 ~~~~~~~~~D~~G~~~~~~----~---~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 55 SDGFKLNVWDIGGQRAIRP----Y---WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred ECCEEEEEEECCCCHHHHH----H---HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 1256789999999742211 1 122334789999999987532111 111111 11 11235788999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHH
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
..... ...+....+ +.++. ...+...+|+..|.| ++.+++++.+
T Consensus 128 ~~~~~-~~~i~~~l~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l~~ 172 (173)
T cd04155 128 ATAAP-AEEIAEALN-----------LHDLRDRTWHIQACSAKTGEG-LQEGMNWVCK 172 (173)
T ss_pred ccCCC-HHHHHHHcC-----------CcccCCCeEEEEEeECCCCCC-HHHHHHHHhc
Confidence 54321 112222111 11111 111235689999999 9999998854
No 137
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=1.3e-09 Score=99.93 Aligned_cols=107 Identities=13% Similarity=-0.019 Sum_probs=60.3
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCCCCc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~~~~ 257 (495)
+.+.|+||||.... ..+ .......+|.+++|+|++..... ......+.. ...+..+|.||+|.....
T Consensus 52 ~~l~i~D~~G~~~~-----~~~--~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 52 VKLQIWDTAGQERF-----RTI--TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEEECCChHHH-----HHH--HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 57899999995221 111 12233478999999999864321 112222221 112358999999985432
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....... ..+..-....+...+|+..|.| +..+++.+.+.
T Consensus 125 ~~~~~~~-------------~~~~~~~~~~~~~e~Sa~~~~~-v~~~~~~l~~~ 164 (165)
T cd01864 125 EVLFEEA-------------CTLAEKNGMLAVLETSAKESQN-VEEAFLLMATE 164 (165)
T ss_pred ccCHHHH-------------HHHHHHcCCcEEEEEECCCCCC-HHHHHHHHHHh
Confidence 1111111 0111111122346789999999 99999988654
No 138
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.03 E-value=6e-09 Score=104.21 Aligned_cols=147 Identities=19% Similarity=0.137 Sum_probs=89.2
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh-----------------hhcCcceecc
Q 011010 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-----------------TKAKIPFYGS 162 (495)
Q Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a-----------------~~~~i~~~~~ 162 (495)
.++|+++ |.+|+||||++.+||..+++.|+||.++++|.|.|....-+.... ...++.....
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 4556555 999999999999999999999999999999998876543332210 0011111100
Q ss_pred ----CCCCChH-----HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-c-cHH
Q 011010 163 ----YTESDPV-----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-Q-AAF 231 (495)
Q Consensus 163 ----~~~~dp~-----~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~-~~~ 231 (495)
....+|. ....+-+..+.+..|||+|||||+.....+.. +... -+|.+++|..+... . +..
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~------i~~~--~~~g~viVt~p~~~~~~~v~ 208 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT------VLQR--IPDGVVIVTTPGKTALEDVK 208 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH------HHhc--cCCeEEEEeCCccchHHHHH
Confidence 0112221 12344556666667999999998875432211 2222 46777777776432 1 222
Q ss_pred HHHHHHhc-cCCceEEEEeCccCCC
Q 011010 232 DQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 232 ~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.....+.+ ..++.|+|.|+.+...
T Consensus 209 ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 209 KAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHHhcCCceEEEEecCccCcc
Confidence 23333433 3568899999887643
No 139
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.03 E-value=5.3e-09 Score=103.96 Aligned_cols=38 Identities=37% Similarity=0.386 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
++++.|.+|+||||++.++|.++++.|++|++|++|+.
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 68899999999999999999999999999999999995
No 140
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.03 E-value=7.5e-10 Score=120.56 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.|||||||+.|.|+ |.+..+-.= + |+.+.-... .++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------G~~q~VgNw------------p-----GvTVEkkeg-------------~~~~ 47 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------GANQKVGNW------------P-----GVTVEKKEG-------------KLKY 47 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------ccCceecCC------------C-----CeeEEEEEE-------------EEEe
Confidence 359999999999999999999 654433221 1 111110000 0112
Q ss_pred cCCcEEEEeCCCCCcchHHHHHH-H-HHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~e-l-~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
.++++.|||.||.+.-...-.+| . ++....- +||.++-|+||+.-....- ..+.+.-..| ..+++|++|...+.|
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~-~~D~ivnVvDAtnLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~G 125 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG-KPDLIVNVVDATNLERNLYLTLQLLELGIP-MILALNMIDEAKKRG 125 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC-CCCEEEEEcccchHHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcC
Confidence 37789999999975433221222 2 3333322 8999999999985433332 2333333344 699999999988766
Q ss_pred chhHHH---HhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 GALSAV---AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~~ls~~---~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
-.+... +..|+|| ++.++..|.| +++|++++.+..+
T Consensus 126 i~ID~~~L~~~LGvPV------------------v~tvA~~g~G-~~~l~~~i~~~~~ 164 (653)
T COG0370 126 IRIDIEKLSKLLGVPV------------------VPTVAKRGEG-LEELKRAIIELAE 164 (653)
T ss_pred CcccHHHHHHHhCCCE------------------EEEEeecCCC-HHHHHHHHHHhcc
Confidence 544432 2344444 5566667777 7777777766554
No 141
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.03 E-value=2.7e-09 Score=102.29 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc---ccHHHHHHHHh-ccCCceEEEEeCccCCCCcc-
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG---QAAFDQAQAFK-QSVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g---~~~~~~~~~f~-~~~~~~~vIlTK~D~~~~~g- 258 (495)
..+.|+||||.. .+.. .+...+..+|.+++|+|+..+ ......+..+. ...++..+|+||+|......
T Consensus 83 ~~i~~iDtPG~~----~~~~---~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHE----ILMA---TMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChH----HHHH---HHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHH
Confidence 678999999952 2322 334444478999999999853 22223332222 22334578999999864211
Q ss_pred -chhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
..+..+. +.+... ....+.+++|++.|.| ++.|++.+.+.+++
T Consensus 156 ~~~~~~i~------------~~~~~~~~~~~~i~~vSA~~g~g-i~~L~~~l~~~l~~ 200 (203)
T cd01888 156 LENYEQIK------------KFVKGTIAENAPIIPISAQLKYN-IDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHH------------HHHhccccCCCcEEEEeCCCCCC-HHHHHHHHHHhCCC
Confidence 1111111 001110 1234567899999999 99999999988764
No 142
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.02 E-value=3.1e-09 Score=95.13 Aligned_cols=149 Identities=18% Similarity=0.102 Sum_probs=81.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+|+|++||||||+++.|. +.+.. .+. .| + .++.+.... ..+
T Consensus 2 i~i~G~~~~GKssl~~~l~------~~~~~---~~~-~~---------t--~~~~~~~~~-----------------~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA------GGQFS---EDT-IP---------T--VGFNMRKVT-----------------KGN 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc------cCCCC---cCc-cC---------C--CCcceEEEE-----------------ECC
Confidence 7899999999999999998 54321 110 00 0 011111100 124
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~~~~ 256 (495)
..+.++||||...... . .......+|.+++|+|++...... .....+.. ...+..+|+||+|....
T Consensus 44 ~~~~~~D~~g~~~~~~----~---~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 44 VTLKVWDLGGQPRFRS----M---WERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred EEEEEEECCCCHhHHH----H---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 5688999999632211 1 122334789999999987532211 11122111 11235889999997543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ........+ .... ....+...+|+..|.| +..+++++.+
T Consensus 117 ~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 158 (159)
T cd04159 117 LS-VDELIEQMN-----------LKSITDREVSCYSISCKEKTN-IDIVLDWLIK 158 (159)
T ss_pred cC-HHHHHHHhC-----------cccccCCceEEEEEEeccCCC-hHHHHHHHhh
Confidence 21 111221111 0111 1112346789999999 9999998864
No 143
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.02 E-value=2.9e-09 Score=106.73 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++|+|+|..||||||++.+||..|++.|+||++|++|++-
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKA 41 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 4788899999999999999999999999999999999864
No 144
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.01 E-value=7.1e-09 Score=106.52 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~ 143 (495)
.+.++|+|+|.+|+||||++.+||.+|+++|++|++|++|++++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 356799999999999999999999999999999999999987643
No 145
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.01 E-value=1.7e-09 Score=103.27 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCcc-----
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG----- 258 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g----- 258 (495)
.++.++||||.........+.++.. . +...|.+++|.|.............+.+......+|+||+|......
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~-~-~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~ 129 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEM-K-FSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKP 129 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHh-C-ccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhcccc
Confidence 4789999999864322111112221 1 23678888887765443333344444433334589999999854311
Q ss_pred ------chhHHHHhcCCCeEEeccCCCccc-c----cccCccchhhhc--cCCCCcHHHHHHHHHhCCCC
Q 011010 259 ------GALSAVAATKSPVIFIGTGEHMDE-F----EVFDVKPFVSRL--LGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 259 ------~~ls~~~~~~~PI~fi~~Ge~i~~-l----~~f~p~~~vS~l--~G~Gdi~~L~e~i~~~~~~~ 315 (495)
..+.... +.+.+ + -.+.+.+.+|+. .+.+ +..|.+.+...+|+.
T Consensus 130 ~~~~~~~~l~~i~------------~~~~~~~~~~~~~~p~v~~vS~~~~~~~~-~~~l~~~~~~~l~~~ 186 (197)
T cd04104 130 RSFNREQVLQEIR------------DNCLENLQEAGVSEPPVFLVSNFDPSDYD-FPKLRETLLKDLPAH 186 (197)
T ss_pred ccccHHHHHHHHH------------HHHHHHHHHcCCCCCCEEEEeCCChhhcC-hHHHHHHHHHHhhHH
Confidence 1111111 11111 1 122345556766 4565 999999999988743
No 146
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.01 E-value=2.3e-09 Score=95.78 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++++. +.+..-... + ..+..++...... ...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~~-------------~~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFV------DGKFDENYK----S-----------TIGVDFKSKTIEI-------------DGK 47 (159)
T ss_pred eEEEECCCCCCHHHHHHHHH------hCcCCCccC----C-----------ceeeeeEEEEEEE-------------CCE
Confidence 48999999999999999998 333221111 0 0011111100000 012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhccC---CceEEEEeCccCC-C
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDGH-A 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~~---~~~~vIlTK~D~~-~ 255 (495)
.+++.++||||...... .....+..+|.+++|+|++..... ......+.... .+..+|+||+|.. .
T Consensus 48 ~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 48 TVKLQIWDTAGQERFRS-------ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ 120 (159)
T ss_pred EEEEEEEecCChHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc
Confidence 46789999999732211 122334478999999999753221 11222332222 4568999999985 2
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHH
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
.... ..... .+.. ....+...+|+..|.| +..+++++.
T Consensus 121 ~~~~-~~~~~-------------~~~~-~~~~~~~~~sa~~~~~-i~~~~~~i~ 158 (159)
T cd00154 121 RQVS-TEEAQ-------------QFAK-ENGLLFFETSAKTGEN-VEELFQSLA 158 (159)
T ss_pred cccc-HHHHH-------------HHHH-HcCCeEEEEecCCCCC-HHHHHHHHh
Confidence 2111 11110 0000 1133456788888988 888888764
No 147
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.01 E-value=1.2e-08 Score=115.63 Aligned_cols=147 Identities=19% Similarity=0.190 Sum_probs=95.2
Q ss_pred CCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh---------------------hhhcCc
Q 011010 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (495)
Q Consensus 100 ~~~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~---------------------a~~~~i 157 (495)
.+++|+|++.. |+||||++.+||..++..|++|++|++|++++.....+... ....++
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 46789999865 99999999999999999999999999999887543322110 011234
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-c-cc
Q 011010 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI-G-QA 229 (495)
Q Consensus 158 ~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~-g-~~ 229 (495)
.+..... ..+|.++ ..+.+..++ ..||+||||||+.....+... +. . .+|.+++|+.... . .+
T Consensus 610 ~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~-----la--~-~ad~~llVvr~~~t~~~~ 680 (726)
T PRK09841 610 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-----VG--R-SVGTSLLVARFGLNTAKE 680 (726)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-----HH--H-hCCeEEEEEeCCCCCHHH
Confidence 4443221 2344433 233444443 579999999999876543211 11 1 5799999988753 2 22
Q ss_pred HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 230 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 230 ~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.....+.+.+ ..++.|+|+|++|...
T Consensus 681 ~~~~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 681 VSLSMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHHHHhCCCceEEEEEeCcccCc
Confidence 3333444433 3566899999998643
No 148
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.01 E-value=2.6e-09 Score=97.45 Aligned_cols=152 Identities=13% Similarity=0.059 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|++||||||+++++. +.+.. +.+.+...+ .....+.. . ..
T Consensus 2 ki~v~G~~~~GKTsli~~~~------~~~~~----~~~~~t~~~-------~~~~~~~~--~----------------~~ 46 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFV------QGHFV----DDYDPTIED-------SYRKQIEI--D----------------GE 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCcCC----cccCCchhh-------hEEEEEEE--C----------------CE
Confidence 58999999999999999998 32211 111111100 00000000 0 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---c-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---Q-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~-~~~~~~vIlTK~D~~~ 255 (495)
.+.+.++||||...... +. ......+|.+++|+|++....... ....+. . .-.+..+|.||+|...
T Consensus 47 ~~~l~i~Dt~g~~~~~~-~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 47 VCLLDILDTAGQEEFSA-MR------DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred EEEEEEEECCCcccchH-HH------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 45678999999643221 11 112236799999999875432111 111111 1 1123588999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... +.+ ..+. .+...+|+..|.| +..+++++.+.+
T Consensus 120 ~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~~ 161 (164)
T smart00173 120 ERVVSTEEG-------------KELARQWG--CPFLETSAKERVN-VDEAFYDLVREI 161 (164)
T ss_pred cceEcHHHH-------------HHHHHHcC--CEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 311100000 001 1111 2446789999999 999999887654
No 149
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.01 E-value=3.9e-09 Score=99.15 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +.+.....+ +.. .+...+ .
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~------~~~~~~~~~-T~~----------~~~~~i---~------------------- 59 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLK------DDRLAQHVP-TLH----------PTSEEL---T------------------- 59 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHh------cCCCcccCC-ccC----------cceEEE---E-------------------
Confidence 3468999999999999999998 443211110 000 000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..+.++.++||||..... .+ ....+..+|.+++|+|++.... .......+.. .-.+..+|.||+|.
T Consensus 60 ~~~~~~~l~D~~G~~~~~-----~~--~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 60 IGNIKFKTFDLGGHEQAR-----RL--WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred ECCEEEEEEECCCCHHHH-----HH--HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 125678899999964221 11 1233347899999999874321 1112222111 11345889999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..... .-......+.+-...+-+... +......+...+|+..|.| ++++++++.+.
T Consensus 133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~e~~~~l~~~ 189 (190)
T cd00879 133 PGAVS-EEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQG-YGEAFRWLSQY 189 (190)
T ss_pred CCCcC-HHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCC-hHHHHHHHHhh
Confidence 43211 111111111110000000000 0011111346789999999 99999998764
No 150
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.00 E-value=2.6e-09 Score=107.04 Aligned_cols=41 Identities=29% Similarity=0.234 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++|+|+|..||||||++.+||..|+++|+||++|++|++-+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~ 42 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKAD 42 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccc
Confidence 46888899999999999999999999999999999998654
No 151
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.00 E-value=7.6e-09 Score=103.24 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=85.2
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH--------------HHHHhh---------h-hhcC
Q 011010 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF--------------DQLKQN---------A-TKAK 156 (495)
Q Consensus 102 ~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~--------------dqL~~~---------a-~~~~ 156 (495)
++|+|++ ..||||||++.+||.+|+++|++|++|++|++.++.. +.+... . ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 4788875 5699999999999999999999999999999643321 111100 0 1123
Q ss_pred cceeccCCCCCh----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 157 i~~~~~~~~~dp----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
+.+++.....+. .....+.++.++...||+||||||+...... ..++..+|.+++|++++... ..
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~---------~~~l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA---------LMALYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHH---------HHHHHhCCeEEEEcCCCchHHHhH
Confidence 333332211111 1113445555554579999999987653221 11222689999999987421 12
Q ss_pred HHHHHHHhc--------cCCc-eEEEEeCccCCC
Q 011010 231 FDQAQAFKQ--------SVSV-GAVIVTKMDGHA 255 (495)
Q Consensus 231 ~~~~~~f~~--------~~~~-~~vIlTK~D~~~ 255 (495)
......+.. ..++ .++|+|++|...
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~ 187 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGR 187 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhh
Confidence 222222221 1122 478999998653
No 152
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.00 E-value=4.2e-09 Score=97.41 Aligned_cols=153 Identities=18% Similarity=0.125 Sum_probs=84.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+||||||+++++. +... . .+.| | .+..+... ...+
T Consensus 2 vvlvG~~~~GKTsl~~~l~------~~~~----~-~~~~----------T-~~~~~~~~-----------------~~~~ 42 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK------QDEF----M-QPIP----------T-IGFNVETV-----------------EYKN 42 (169)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCC----C-CcCC----------c-CceeEEEE-----------------EECC
Confidence 7899999999999999998 3211 0 0111 1 11111110 0125
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~~~~ 256 (495)
+.+.++||||....... .......+|.++||+|++...... .....+.. .-.+..+|.||+|...+
T Consensus 43 ~~i~l~Dt~G~~~~~~~-------~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 43 LKFTIWDVGGKHKLRPL-------WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred EEEEEEECCCChhcchH-------HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 77899999997432211 112234789999999987542221 11122211 11346899999998533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccC--ccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFD--VKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~--p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
.. ........ ...++.... +...+|++.|.| +..+++++.+.+.+.
T Consensus 116 ~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~g~g-v~~~f~~l~~~~~~~ 163 (169)
T cd04158 116 LS-VEEMTELL-----------SLHKLCCGRSWYIQGCDARSGMG-LYEGLDWLSRQLVAA 163 (169)
T ss_pred CC-HHHHHHHh-----------CCccccCCCcEEEEeCcCCCCCC-HHHHHHHHHHHHhhc
Confidence 11 01111100 011111111 223579999999 999999998766543
No 153
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.00 E-value=2.9e-09 Score=101.80 Aligned_cols=162 Identities=13% Similarity=0.027 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|.+||||||+++.++ +.+. .+.|.|..... ....... .. ..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~------~~~f----~~~~~pt~~~~-------~~~~~i~-~~----------------~~ 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFL------AQEF----PEEYIPTEHRR-------LYRPAVV-LS----------------GR 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHH------cCCC----CcccCCccccc-------cceeEEE-EC----------------CE
Confidence 48999999999999999998 3221 11122211000 0000000 00 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHH-HHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc------cCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEE-MRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ------SVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~e-l~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~------~~~~~~vIlTK~D 252 (495)
.+.+.|+||||.........++ .......+..+|.+++|+|++....... ....+.. ...+..+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 3678899999964321111111 1112233458999999999985432211 1111111 1124589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.....-...... +.+..-....+...+|+..|.| ++.|++.+.+.+
T Consensus 128 l~~~~~~~~~~~-------------~~~~~~~~~~~~~e~Sak~g~~-v~~lf~~i~~~~ 173 (198)
T cd04142 128 QQRHRFAPRHVL-------------SVLVRKSWKCGYLECSAKYNWH-ILLLFKELLISA 173 (198)
T ss_pred ccccccccHHHH-------------HHHHHHhcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 853211000000 0000000123456789999999 999998887654
No 154
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.00 E-value=3.9e-09 Score=96.00 Aligned_cols=154 Identities=12% Similarity=0.022 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
-.|+++|.+||||||+++++. +... + +.+.+ +............ .
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~------~~~~--~--~~~~~---------t~~~~~~~~~~~~----------------~ 47 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFI------QSYF--V--TDYDP---------TIEDSYTKQCEID----------------G 47 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHH------hCCC--C--cccCC---------CccceEEEEEEEC----------------C
Confidence 359999999999999999998 3221 1 11111 1110000000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.++||||..... .+. . .....+|.+++|+|++........ ...+.. ...+..+|.||+|..
T Consensus 48 ~~~~~~i~Dt~G~~~~~-~~~---~---~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 48 QWAILDILDTAGQEEFS-AMR---E---QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEEEEECCCCcchh-HHH---H---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 13567899999964322 111 1 222367999999999854322111 111211 112458899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +....+. .+...+|+..|.| +..+++++.+.+
T Consensus 121 ~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~~ 163 (164)
T cd04145 121 HQRKVSREEGQ------------ELARKLK--IPYIETSAKDRLN-VDKAFHDLVRVI 163 (164)
T ss_pred ccceecHHHHH------------HHHHHcC--CcEEEeeCCCCCC-HHHHHHHHHHhh
Confidence 43211111110 0001111 2446789999999 999999887653
No 155
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.00 E-value=2.2e-09 Score=107.65 Aligned_cols=105 Identities=24% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHH
Q 011010 92 PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRI 171 (495)
Q Consensus 92 ~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~i 171 (495)
.+|...+..-..++|||+|+||||||+++|. +-+.-+-+ .+++|..-+|-...+
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LT------nt~seva~------------y~FTTl~~VPG~l~Y-------- 107 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLT------NTKSEVAD------------YPFTTLEPVPGMLEY-------- 107 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHh------CCCccccc------------cCceecccccceEee--------
Confidence 3444444445689999999999999999999 65554433 345555545433222
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH
Q 011010 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD 232 (495)
Q Consensus 172 a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~ 232 (495)
++..+-|+|+||+......-...-+++...+..||.+++|+|+.......+
T Consensus 108 ----------~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~ 158 (365)
T COG1163 108 ----------KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD 158 (365)
T ss_pred ----------cCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHH
Confidence 378899999999754332111111334555669999999999986544333
No 156
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=3.3e-09 Score=105.12 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.+|||||||+|.|. |.+++.++. |.+ ++..-..+.. .
T Consensus 31 ~~~IllvG~tGvGKSSliNaLl------g~~~~~v~~--~~~---------~T~~~~~~~~--~---------------- 75 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIF------GERKAATSA--FQS---------ETLRVREVSG--T---------------- 75 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHh------CCCCcccCC--CCC---------ceEEEEEEEE--E----------------
Confidence 4579999999999999999999 887766653 221 1111111111 0
Q ss_pred hcCCcEEEEeCCCCCcch------HHHHHHHHHHHHHhcCCCEEEEEeeCCc---cccHHHHHHHHhccC-----CceEE
Q 011010 181 KENCDLIIVDTSGRHKQE------AALFEEMRQVSEATVNPDLVIFVMDSSI---GQAAFDQAQAFKQSV-----SVGAV 246 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~------~~l~~el~~i~~~i~~~d~vllVvDa~~---g~~~~~~~~~f~~~~-----~~~~v 246 (495)
..+..+.||||||+.... ......+.+..... .+|.++||..... .......++.+.+.. ..+.+
T Consensus 76 ~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~-~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKK-TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhcc-CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 136789999999987542 11222222222222 6788888864432 122223333333321 23799
Q ss_pred EEeCccCCCCc
Q 011010 247 IVTKMDGHAKG 257 (495)
Q Consensus 247 IlTK~D~~~~~ 257 (495)
|+||+|.....
T Consensus 155 V~T~~d~~~p~ 165 (249)
T cd01853 155 VLTHAASSPPD 165 (249)
T ss_pred EEeCCccCCCC
Confidence 99999987554
No 157
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.00 E-value=1.8e-09 Score=99.12 Aligned_cols=108 Identities=14% Similarity=-0.003 Sum_probs=60.5
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHhcc-------CCceEEEEeCccC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFKQS-------VSVGAVIVTKMDG 253 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~~~-------~~~~~vIlTK~D~ 253 (495)
+.+.++||||...... + ....+..+|.+++|+|+...+..... ...+... ..+..+|+||+|.
T Consensus 49 ~~~~~~D~~g~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 49 VTLQIWDTAGQERFQS-----L--GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred EEEEEEeCCChHHHHh-----H--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 4567999999632111 1 12334478999999998764432111 1111111 1235889999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ ....-..+.+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 166 (172)
T cd01862 122 EEKRQVSTKKAQ-------------QWCQSNGNIPYFETSAKEAIN-VEQAFETIARKA 166 (172)
T ss_pred ccccccCHHHHH-------------HHHHHcCCceEEEEECCCCCC-HHHHHHHHHHHH
Confidence 632111111110 010011123556789999999 999999987654
No 158
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.00 E-value=1.8e-09 Score=98.05 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++++. +.+.. . .+.+ ..+..+....... ...
T Consensus 2 kv~v~G~~~~GKTtli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~~-------------~~~ 47 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFT------DGKFS---E-QYKS-----------TIGVDFKTKTIEV-------------DGK 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------ceeeEEEEEEEEE-------------CCE
Confidence 48999999999999999998 44321 1 0101 0011110000000 011
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHhc---cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.++||||..... . + ....+..+|.+++|+|++........ ...+.. ...+..+|.||+|....
T Consensus 48 ~~~~~l~D~~G~~~~~----~-~--~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 48 RVKLQIWDTAGQERFR----S-I--TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred EEEEEEEECCChHHHH----H-H--HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 3577899999963211 1 1 12233478999999999754332221 122221 12346899999997542
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... +..... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~------------~~~~~~--~~~~~e~Sa~~~~~-i~~l~~~i~~~~ 161 (164)
T smart00175 121 RQVSREEAE------------AFAEEH--GLPFFETSAKTNTN-VEEAFEELAREI 161 (164)
T ss_pred cCCCHHHHH------------HHHHHc--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 111111111 000111 12346688899999 999999987765
No 159
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.00 E-value=2.3e-09 Score=97.42 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||++++|. +.+...... + .. +..++...-.. ...
T Consensus 2 ki~liG~~~~GKSsli~~l~------~~~~~~~~~----~--------~~---~~~~~~~~~~~-------------~~~ 47 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM------YDTFDNQYQ----A--------TI---GIDFLSKTMYL-------------EDK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCccCC----C--------ce---eeeEEEEEEEE-------------CCE
Confidence 48999999999999999998 544432110 1 00 11110000000 001
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhccC---CceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~~---~~~~vIlTK~D~~~~ 256 (495)
.+.+.++||||..... .+ ....+..+|.+++|+|++..... ......+.... .+..+|+||+|....
T Consensus 48 ~~~l~~~D~~G~~~~~-----~~--~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 48 TVRLQLWDTAGQERFR-----SL--IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred EEEEEEEECCCcHHHH-----HH--HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 3568999999963221 11 22234488999999999754322 22222222211 246899999998432
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
......... ...... ..+...+|+..|.| ++.+++++.+.
T Consensus 121 ~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~i~~~ 160 (161)
T cd01861 121 RQVSTEEGE------------KKAKEL--NAMFIETSAKAGHN-VKELFRKIASA 160 (161)
T ss_pred CccCHHHHH------------HHHHHh--CCEEEEEeCCCCCC-HHHHHHHHHHh
Confidence 211111111 000011 12346689999999 99999988764
No 160
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.00 E-value=6.9e-09 Score=102.28 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=84.0
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh--------------HHHHHh----------hhhhcC
Q 011010 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--------------FDQLKQ----------NATKAK 156 (495)
Q Consensus 102 ~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a--------------~dqL~~----------~a~~~~ 156 (495)
++|+|+ +..|+||||++.+||.+|+++|++|++|++|+..+.. .+.+.. .....+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 467777 5669999999999999999999999999999853211 111110 001123
Q ss_pred cceeccCCCCCh----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 157 i~~~~~~~~~dp----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
+.+.......+. .....+.+..+. ..||+||||||+..... . ..++..+|.+++|+++.... ..
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~--~-------~~~l~~aD~viiv~~~~~~s~~~~ 151 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESG--F-------RNAVAPADEAIVVTTPEVSAVRDA 151 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHH--H-------HHHHHhCCeEEEEcCCCcHHHHHH
Confidence 333332221111 122345555554 47999999998865321 1 12223679999999987421 12
Q ss_pred HHHHHHHhcc-CCceEEEEeCccCC
Q 011010 231 FDQAQAFKQS-VSVGAVIVTKMDGH 254 (495)
Q Consensus 231 ~~~~~~f~~~-~~~~~vIlTK~D~~ 254 (495)
......+... ....++|+|+++..
T Consensus 152 ~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 152 DRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHHcCCCceEEEEeCcCch
Confidence 2222222221 22458999999853
No 161
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.99 E-value=5e-09 Score=97.47 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||++++|. +.+.. .. .+ .... .+..+ ..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~------~~~~~--~~---~~------t~~~---~~~~~-------------------~~ 56 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFL------LGEVV--HT---SP------TIGS---NVEEI-------------------VY 56 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCC--Cc---CC------cccc---ceEEE-------------------EE
Confidence 469999999999999999997 22211 00 00 0000 00000 01
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh-c---cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK-Q---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~-~---~~~~~~vIlTK~D~~ 254 (495)
++..+.++||||....... .......+|.+++|+|++..... ......+. . ...+..+|+||+|..
T Consensus 57 ~~~~~~l~D~~G~~~~~~~-------~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSS-------WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred CCeEEEEEECCCCHHHHHH-------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 2567899999997432211 11223488999999999854321 11122221 1 113469999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.... .-......+. +..... ..+...+|+..|.| ++.+++++.+
T Consensus 130 ~~~~-~~~i~~~l~~--------~~~~~~--~~~~~~~SA~~g~g-i~e~~~~l~~ 173 (174)
T cd04153 130 GAMT-PAEISESLGL--------TSIRDH--TWHIQGCCALTGEG-LPEGLDWIAS 173 (174)
T ss_pred CCCC-HHHHHHHhCc--------ccccCC--ceEEEecccCCCCC-HHHHHHHHhc
Confidence 4211 1111111110 001111 11346789999999 9999988753
No 162
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.99 E-value=4.1e-09 Score=95.67 Aligned_cols=149 Identities=19% Similarity=0.107 Sum_probs=84.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+||||||+++++. +.+.. .+.+ ..++.+.. +...+
T Consensus 2 i~iiG~~~~GKssli~~~~------~~~~~-----~~~~-----------t~~~~~~~-----------------~~~~~ 42 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK------LGEVV-----TTIP-----------TIGFNVET-----------------VEYKN 42 (158)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCCC-----CCCC-----------CcCcceEE-----------------EEECC
Confidence 7899999999999999999 54411 1111 00111000 00125
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~~~ 256 (495)
+++.++||||...... . ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|....
T Consensus 43 ~~~~i~D~~G~~~~~~-~------~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 43 VSFTVWDVGGQDKIRP-L------WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred EEEEEEECCCChhhHH-H------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 7889999999753221 1 1223347899999999986532221 1111111 12345889999998653
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
. .........+.+. ......+...+|+..|.| ++.+++++.+
T Consensus 116 ~-~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~g-v~~~~~~l~~ 157 (158)
T cd00878 116 L-SVSELIEKLGLEK----------ILGRRWHIQPCSAVTGDG-LDEGLDWLLQ 157 (158)
T ss_pred c-CHHHHHHhhChhh----------ccCCcEEEEEeeCCCCCC-HHHHHHHHhh
Confidence 2 1111111111100 011223556789999999 9999988754
No 163
>PLN03127 Elongation factor Tu; Provisional
Probab=98.99 E-value=5.2e-09 Score=112.05 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|..++|||||+++|..+..+.|+...+.. .|... +.-++..|..-..+ . +.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~----~E~~rGiTi~~~~~-~-~~-------------- 120 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP----EEKARGITIATAHV-E-YE-------------- 120 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh----hHhhcCceeeeeEE-E-Ec--------------
Confidence 356999999999999999999877666565433332 22211 11122223221111 1 11
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.++..++||||||.+. ++.. ....+..+|.+++|+|+..+... .+.+..... ..+...+++||+|...
T Consensus 121 --~~~~~i~~iDtPGh~~----f~~~---~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 121 --TAKRHYAHVDCPGHAD----YVKN---MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred --CCCeEEEEEECCCccc----hHHH---HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 2356889999999752 2222 22233378999999999865322 222222222 2343467899999864
No 164
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.99 E-value=2.5e-09 Score=98.06 Aligned_cols=154 Identities=15% Similarity=0.091 Sum_probs=83.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++++. +.+... .+.+ ..++.+...... ....
T Consensus 4 ki~i~G~~~vGKSsli~~~~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~~~ 49 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFA------DDTYTE----SYIS-----------TIGVDFKIRTIE-------------LDGK 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-----------ccceeEEEEEEE-------------ECCE
Confidence 58999999999999999998 322110 1111 011111110000 0012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHhc---cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||..... .+ .......+|.+++|+|++........ ...+.. ...+..+|.||+|....
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~--~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 50 TIKLQIWDTAGQERFR-----TI--TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEEECCCcHhHH-----HH--HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 4578899999953211 11 12233478999999999754322221 122211 11245889999997533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... .... ....|...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~ 163 (166)
T cd01869 123 RVVDYSEAQ-------------EFAD-ELGIPFLETSAKNATN-VEQAFMTMAREI 163 (166)
T ss_pred cCCCHHHHH-------------HHHH-HcCCeEEEEECCCCcC-HHHHHHHHHHHH
Confidence 211111110 0100 0112456789999999 999998887643
No 165
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.99 E-value=3e-09 Score=100.04 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCC---ChHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES---DPVRIAVEGVETF 179 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~---dp~~ia~~~l~~~ 179 (495)
++.|.|..||||||++++|+. ...+|.+++++-.|.-..+--.++-. ..++++.....+. ........++..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~---~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQ---EDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHH---TTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhc---ccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 688999999999999999998 66679999999998766554333322 1233332221110 0111223344444
Q ss_pred hh-c--CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC-CceEEEEeCccCCC
Q 011010 180 KK-E--NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHA 255 (495)
Q Consensus 180 ~~-~--~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~~~~vIlTK~D~~~ 255 (495)
.. . .+|++||.|.|..+...- ...-..+...+ ..+.++.|+|+.......+....+.+.+ .-..+|+||+|..+
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~-~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDF-RLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVS 155 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHE-SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHH
T ss_pred HHhcCCCcCEEEECCccccccchh-hhccccccccc-cccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCC
Confidence 33 2 589999999997665543 21123444556 7899999999965322222212222221 22689999999865
Q ss_pred C
Q 011010 256 K 256 (495)
Q Consensus 256 ~ 256 (495)
.
T Consensus 156 ~ 156 (178)
T PF02492_consen 156 D 156 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 166
>PRK00049 elongation factor Tu; Reviewed
Probab=98.99 E-value=4.3e-09 Score=111.19 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|..++|||||++.|.....+.|..-.... .|... +......|..-. ... +
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rg~Ti~~~-~~~-~--------------- 70 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAP----EEKARGITINTA-HVE-Y--------------- 70 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCCh----HHHhcCeEEeee-EEE-E---------------
Confidence 346999999999999999999976655543222111 11111 111222222111 000 1
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
...+..++||||||.. .+.. .....+..+|.+++|+|+..+.... ..+..... ..+...+++||+|...
T Consensus 71 -~~~~~~i~~iDtPG~~----~f~~---~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 71 -ETEKRHYAHVDCPGHA----DYVK---NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred -cCCCeEEEEEECCCHH----HHHH---HHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1235689999999973 2333 3333445899999999998763322 22222222 2343346799999864
No 167
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.98 E-value=3.8e-09 Score=95.31 Aligned_cols=103 Identities=24% Similarity=0.240 Sum_probs=71.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCc
Q 011010 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (495)
Q Consensus 106 ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~d 185 (495)
..+.+|+||||++..+|.+++.+|.+|.++++|++++.. .||
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------------------------------------~yd 46 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------------------------------------DYD 46 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------CCC
Confidence 347779999999999999999999999999999865411 189
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhcc--CCceEEEEeCccCCC
Q 011010 186 LIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQS--VSVGAVIVTKMDGHA 255 (495)
Q Consensus 186 vviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~--~~~~~vIlTK~D~~~ 255 (495)
++|||||+..... . ...+..+|.+++|++++... +.....+.+.+. .....+|+|+++...
T Consensus 47 ~VIiD~p~~~~~~--~-------~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 47 YIIIDTGAGISDN--V-------LDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPK 111 (139)
T ss_pred EEEEECCCCCCHH--H-------HHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence 9999998854322 1 12233679999999987422 112222233221 234589999997543
No 168
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.98 E-value=7.4e-09 Score=117.93 Aligned_cols=148 Identities=17% Similarity=0.121 Sum_probs=92.3
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh---------------------hhhcC
Q 011010 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAK 156 (495)
Q Consensus 99 ~~~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~---------------------a~~~~ 156 (495)
..+++|+|++ .+|+||||++.+||..+++.|++|++|++|++++.....+... ....+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 3467888885 4599999999999999999999999999999887544333210 11123
Q ss_pred cceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-ccc
Q 011010 157 IPFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI-GQA 229 (495)
Q Consensus 157 i~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~-g~~ 229 (495)
+.+..... ..+|..+ ..+.+..++ +.||+||||||+.....+. ......+|.+++|+.+.. ...
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~--------~~l~~~~D~vl~v~~~~~~~~~ 694 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM--------RAAARLAIIMLLVTAYDRVVVE 694 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH--------HHhhhhCCeEEEEEEeCceeHH
Confidence 44443322 2233332 233455543 5899999999998653321 111114799999988642 222
Q ss_pred -HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 230 -AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 230 -~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
..+..+.+.. ..++.|+|+|++|...
T Consensus 695 ~~~~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 695 CGRADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCChhh
Confidence 2223333332 2356799999998643
No 169
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=98.98 E-value=7.4e-09 Score=105.22 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++|+|+|..|+||||++.+||..|+++|+||++|++|+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~ 40 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKH 40 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCC
Confidence 3688889999999999999999999999999999999844
No 170
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.98 E-value=5.3e-09 Score=105.10 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++|+|+|..||||||++.+||..|+++|++|++||+|++-
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 4789999999999999999999999999999999999963
No 171
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.97 E-value=2.6e-09 Score=97.13 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=83.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||++++|. +.+.. +.|.+ ..++.+...... ....
T Consensus 2 ki~~vG~~~vGKTsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~~~ 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYC------EGRFV----SKYLP-----------TIGIDYGVKKVS-------------VRNK 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCC----CCCCC-----------ccceeEEEEEEE-------------ECCe
Confidence 48999999999999999998 43311 01111 001111000000 0012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc--------cCCceEEEEeCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ--------SVSVGAVIVTKM 251 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~--------~~~~~~vIlTK~ 251 (495)
.+.+.|+||||..... .+ .......+|.+++|+|++.... .......+.. ...+..+|.||+
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~--~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 120 (168)
T cd04119 48 EVRVNFFDLSGHPEYL-----EV--RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120 (168)
T ss_pred EEEEEEEECCccHHHH-----HH--HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEch
Confidence 5678899999973211 12 1122347899999999875322 1112222211 123469999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|............. +...+.. .+...+|+..|.| +..+++.+.+.+
T Consensus 121 Dl~~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~l 166 (168)
T cd04119 121 DLTKHRAVSEDEGR------------LWAESKG--FKYFETSACTGEG-VNEMFQTLFSSI 166 (168)
T ss_pred hcccccccCHHHHH------------HHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 98532111111110 0001111 2346789999999 999999887643
No 172
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.97 E-value=1e-08 Score=100.77 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=88.1
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCC-------c------chh-HHHH-------HhhhhhcCcce
Q 011010 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTF-------R------AGA-FDQL-------KQNATKAKIPF 159 (495)
Q Consensus 102 ~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~-------R------~~a-~dqL-------~~~a~~~~i~~ 159 (495)
++|+|+|+- |+||||++++||..|++.|++|.+|+.||. . .|- ...+ ..+....++.|
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 479999998 999999999999999999999999999971 1 110 0111 11223345555
Q ss_pred eccCCCC--Ch---------HHHHHHHHHHHh-hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc
Q 011010 160 YGSYTES--DP---------VRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG 227 (495)
Q Consensus 160 ~~~~~~~--dp---------~~ia~~~l~~~~-~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g 227 (495)
.+-.... +. .....+.+..+. ...+++||||||.-.... ....+..+|.++.|+.+-..
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~---------~~~al~~aD~vL~V~~~Da~ 152 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY---------TRQALAAADLVLVVVNPDAA 152 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH---------HHHHHHhCCeEEEEeCCCHH
Confidence 4422111 11 112344555665 567899999998754322 12223367999999987543
Q ss_pred ccHHHHHHHHhccCCceEEEEeCccCCCCc
Q 011010 228 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 228 ~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
.-+.-..+.+. .-..+|+|+.|.....
T Consensus 153 s~~~L~q~~l~---~~~~~liNq~~~~s~l 179 (243)
T PF06564_consen 153 SHARLHQRALP---AGHRFLINQYDPASQL 179 (243)
T ss_pred HHHHHHHhccc---CCcEEEEeccCccchH
Confidence 21111111111 1258899999986654
No 173
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.97 E-value=4.6e-09 Score=89.41 Aligned_cols=72 Identities=31% Similarity=0.327 Sum_probs=57.5
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+|+|+| ..|+||||++..||.+++++|.+|.++++|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 367776 55999999999999999999999999999875
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
||++|||||+...... ...+..+|.+++++++..
T Consensus 40 --~d~viiD~p~~~~~~~---------~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 --YDYIIIDTPPSLGLLT---------RNALAAADLVLIPVQPSP 73 (104)
T ss_pred --CCEEEEeCcCCCCHHH---------HHHHHHCCEEEEeccCCH
Confidence 7899999999753321 122236799999999874
No 174
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=98.97 E-value=3.2e-08 Score=101.54 Aligned_cols=141 Identities=20% Similarity=0.235 Sum_probs=83.1
Q ss_pred CeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH-------------HHHHh-------------hhh
Q 011010 101 PSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ-------------NAT 153 (495)
Q Consensus 101 ~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~-------------dqL~~-------------~a~ 153 (495)
.++|+|+| ..|+||||++.+||.+++++|++|++|++|++..+.- ..+.. ..+
T Consensus 93 ~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (322)
T TIGR03815 93 GVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALPR 172 (322)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCCC
Confidence 56888886 5599999999999999999999999999998765421 01100 001
Q ss_pred hcCcceeccCCCC---ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--c
Q 011010 154 KAKIPFYGSYTES---DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--Q 228 (495)
Q Consensus 154 ~~~i~~~~~~~~~---dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~ 228 (495)
..++.+....... -........++.+ ...||+||||||+..... ....+..+|.+++|+++... .
T Consensus 173 ~~~l~vl~~~~~~~~~~~~~~l~~~l~~l-~~~~D~VIID~p~~~~~~---------~~~~L~~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 173 RGGLSVLSWGRAVGAALPPAAVRAVLDAA-RRGGDLVVVDLPRRLTPA---------AETALESADLVLVVVPADVRAVA 242 (322)
T ss_pred cCCeEEEecCCCCcCCCCHHHHHHHHHHH-HhcCCEEEEeCCCCCCHH---------HHHHHHHCCEEEEEcCCcHHHHH
Confidence 1233332221110 1123344455544 457999999999875322 11223378999999987632 1
Q ss_pred cHHHHHHHHhccCCceEEEEeCc
Q 011010 229 AAFDQAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 229 ~~~~~~~~f~~~~~~~~vIlTK~ 251 (495)
......+.+....+-..+|+|+.
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~ 265 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGP 265 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCC
Confidence 22223333333222235667764
No 175
>PRK12735 elongation factor Tu; Reviewed
Probab=98.97 E-value=6e-09 Score=110.09 Aligned_cols=126 Identities=19% Similarity=0.154 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEE--eccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV--CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIV--s~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|.+++|||||++.|.....+.|..-... ..|... +......|..-.. ..
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rGiT~~~~~-~~----------------- 69 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAP----EEKARGITINTSH-VE----------------- 69 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCCh----hHHhcCceEEEee-eE-----------------
Confidence 35699999999999999999997655444321111 011110 1111111111000 00
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
+..++..+.|+||||.. .+. ......+..+|.+++|+|+..+... .+.+..... ..+...+++||+|...
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~---~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 70 YETANRHYAHVDCPGHA----DYV---KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EcCCCcEEEEEECCCHH----HHH---HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 11235678999999963 232 3333444488999999999865322 222222222 2343345799999864
No 176
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.97 E-value=8e-09 Score=95.81 Aligned_cols=150 Identities=17% Similarity=0.083 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||++++|.. +..+ .+.| +. ++.+.. .. .
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~-----~~~~------~~~~---------t~--g~~~~~-~~----------------~ 50 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL-----GQSV------TTIP---------TV--GFNVET-VT----------------Y 50 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHcc-----CCCc------cccC---------Cc--ccceEE-EE----------------E
Confidence 3699999999999999999971 1111 1111 00 111110 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHh-cc---CCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFK-QS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~-~~---~~~~~vIlTK~D~~ 254 (495)
..+.+.|.||||...... + .......+|.++||+|++...... .....+. .. -.+..+|.||+|..
T Consensus 51 ~~~~~~l~Dt~G~~~~~~-~------~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 KNVKFNVWDVGGQDKIRP-L------WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred CCEEEEEEECCCCHHHHH-H------HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 256789999999743211 1 112334889999999988532221 1121221 11 12468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccc-cCccchhhhccCCCCcHHHHHHHHH
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.... .-.+.... ....+.. ..+...+|+++|.| +..+++++.+
T Consensus 124 ~~~~-~~~i~~~~-----------~~~~~~~~~~~~~~~SAk~g~g-v~~~~~~l~~ 167 (168)
T cd04149 124 DAMK-PHEIQEKL-----------GLTRIRDRNWYVQPSCATSGDG-LYEGLTWLSS 167 (168)
T ss_pred cCCC-HHHHHHHc-----------CCCccCCCcEEEEEeeCCCCCC-hHHHHHHHhc
Confidence 4311 01111100 0111111 11335689999999 9999988754
No 177
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.97 E-value=3.4e-09 Score=96.44 Aligned_cols=151 Identities=14% Similarity=0.114 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee---ccCCCCChHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY---GSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~---~~~~~~dp~~ia~~~l~~~ 179 (495)
.|+++|++||||||+++.|. +.+..- .+.+ . .+..+. ....
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~------t-----~~~~~~~~~v~~~--------------- 46 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV------KNEFSE----NQES------T-----IGAAFLTQTVNLD--------------- 46 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCC----CCCC------c-----cceeEEEEEEEEC---------------
Confidence 58999999999999999998 433211 0111 0 010000 0000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhccC---CceEEEEeCccC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDG 253 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~~---~~~~vIlTK~D~ 253 (495)
.....+.|+||||..... .+. ...+..+|.+++|+|++..... ......+.... .+..+|.||+|.
T Consensus 47 -~~~~~~~i~D~~G~~~~~-----~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 47 -DTTVKFEIWDTAGQERYR-----SLA--PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred -CEEEEEEEEeCCchHHHH-----HHH--HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 124567899999953211 111 1233378999999999854322 22222222221 234789999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......-..... ....... .+...+|+..|.| +..+++++.+.+
T Consensus 119 ~~~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd01860 119 ESKRQVSTEEAQ------------EYADENG--LLFFETSAKTGEN-VNELFTEIAKKL 162 (163)
T ss_pred cccCcCCHHHHH------------HHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 532111111110 0001111 2346789999999 999999987765
No 178
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.96 E-value=5e-09 Score=106.36 Aligned_cols=42 Identities=29% Similarity=0.226 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.++|+|+|..|+||||++.+||..|++.|+||++|++|++..
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~ 45 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKAD 45 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccccc
Confidence 357888899999999999999999999999999999999653
No 179
>PRK12736 elongation factor Tu; Reviewed
Probab=98.96 E-value=6.7e-09 Score=109.61 Aligned_cols=173 Identities=19% Similarity=0.178 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|..++|||||+.+|.....+.|....... .|... +.-....|..-. ...
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rg~T~~~~-~~~----------------- 69 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAP----EEKERGITINTA-HVE----------------- 69 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCH----HHHhcCccEEEE-eeE-----------------
Confidence 456999999999999999999966554443322111 11110 111111111110 000
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
+...+..+.||||||.. ++... ....+..+|.+++|+|+..+.. ....+..... ..+...+++||+|...
T Consensus 70 ~~~~~~~i~~iDtPGh~----~f~~~---~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 70 YETEKRHYAHVDCPGHA----DYVKN---MITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred ecCCCcEEEEEECCCHH----HHHHH---HHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 11235688999999942 23332 3333347899999999986532 2222332222 2343467899999853
Q ss_pred CccchhHHHH-hcCCCeEEeccCCCcccc---cccCccchhhhccCC--------CCcHHHHHHHHHhCC
Q 011010 256 KGGGALSAVA-ATKSPVIFIGTGEHMDEF---EVFDVKPFVSRLLGM--------GDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls~~~-~~~~PI~fi~~Ge~i~~l---~~f~p~~~vS~l~G~--------Gdi~~L~e~i~~~~~ 313 (495)
.. ....... ... +.+..+ ....|..++|++.|. + +..|++.+.+.++
T Consensus 143 ~~-~~~~~i~~~i~---------~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~-i~~Ll~~l~~~lp 201 (394)
T PRK12736 143 DE-ELLELVEMEVR---------ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDA-IMELMDAVDEYIP 201 (394)
T ss_pred hH-HHHHHHHHHHH---------HHHHHhCCCcCCccEEEeeccccccCCCcchhh-HHHHHHHHHHhCC
Confidence 21 1221111 000 000000 012355677777763 3 6888888888775
No 180
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.96 E-value=5.2e-09 Score=94.40 Aligned_cols=151 Identities=12% Similarity=0.040 Sum_probs=83.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|++||||||+++.+. +.+ . .+.+++... ......+.. . ...
T Consensus 2 i~i~G~~~~GKTsli~~l~------~~~--~--~~~~~~~~~-------~~~~~~~~~--~----------------~~~ 46 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFV------KGT--F--VEEYDPTIE-------DSYRKTIVV--D----------------GET 46 (160)
T ss_pred EEEECCCCCCHHHHHHHHH------hCC--C--CcCcCCChh-------HeEEEEEEE--C----------------CEE
Confidence 8999999999999999998 332 1 111222100 000000000 0 124
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---c-cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---Q-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~-~~~~~~vIlTK~D~~~~ 256 (495)
+.+.++||||...... + ....+..+|.+++|+|.+......+ ....+. . ...+..+|+||+|....
T Consensus 47 ~~~~l~D~~g~~~~~~-~------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 47 YTLDILDTAGQEEFSA-M------RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred EEEEEEECCChHHHHH-H------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 6788999999643221 1 1122337899999999875432211 111121 1 12346899999998652
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
......... +..... ..|...+|+..|.| +..+++.+.+.
T Consensus 120 ~~~~~~~~~------------~~~~~~--~~~~~~~S~~~~~~-i~~l~~~l~~~ 159 (160)
T cd00876 120 RQVSKEEGK------------ALAKEW--GCPFIETSAKDNIN-IDEVFKLLVRE 159 (160)
T ss_pred ceecHHHHH------------HHHHHc--CCcEEEeccCCCCC-HHHHHHHHHhh
Confidence 211111110 000011 13556789999988 99999988764
No 181
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.96 E-value=7.7e-09 Score=96.47 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++++.. |.-. + +.| +. +..+.. . ..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~-----~~~~---~---~~~---------t~--~~~~~~-~----------------~~ 54 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL-----GESV---T---TIP---------TI--GFNVET-V----------------TY 54 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCCC---C---cCC---------cc--ccceEE-E----------------EE
Confidence 4699999999999999999961 2211 1 111 00 111110 0 01
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHH-hcc---CCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAF-KQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f-~~~---~~~~~vIlTK~D~~ 254 (495)
....+.|.||||...... + .......+|.+++|+|++.... .......+ ... ..+..+|.||+|..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-----~--~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-----L--WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhHH-----H--HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 256789999999743221 1 1223448999999999875322 11222222 111 12468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccC-ccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~-p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ...+....+. ..+.... ....+|+.+|.| +.++++++.+.+
T Consensus 128 ~~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 173 (175)
T smart00177 128 DAMK-AAEITEKLGL-----------HSIRDRNWYIQPTCATSGDG-LYEGLTWLSNNL 173 (175)
T ss_pred cCCC-HHHHHHHhCc-----------cccCCCcEEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 3221 1112211111 1111111 123589999999 999999987654
No 182
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.96 E-value=4.9e-09 Score=95.49 Aligned_cols=149 Identities=17% Similarity=0.109 Sum_probs=82.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+||||||++++|. ..+.. ... | + .+..+.. .. ..+
T Consensus 2 v~lvG~~~~GKTsl~~~l~------~~~~~--~~~---~---------t--~~~~~~~-~~----------------~~~ 42 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ------LGEVV--TTI---P---------T--IGFNVET-VT----------------YKN 42 (158)
T ss_pred EEEECCCCCCHHHHHHHHc------cCCCc--CcC---C---------c--cCcCeEE-EE----------------ECC
Confidence 7899999999999999996 22211 110 0 0 0111110 00 125
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHH-HHhc---cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQ-AFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~-~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
..+.|+||||...... + ....+..+|.+++|+|++..... ..... .+.. .-.+..+|+||+|....
T Consensus 43 ~~~~i~Dt~G~~~~~~-----~--~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 43 LKFQVWDLGGQTSIRP-----Y--WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred EEEEEEECCCCHHHHH-----H--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 6789999999753221 1 12234489999999998753221 11111 1121 12346999999998532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
. ....+....+. .... ....+..++|+..|.| ++.+++++.+
T Consensus 116 ~-~~~~i~~~~~~--------~~~~--~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 157 (158)
T cd04151 116 L-SEAEISEKLGL--------SELK--DRTWSIFKTSAIKGEG-LDEGMDWLVN 157 (158)
T ss_pred C-CHHHHHHHhCc--------cccC--CCcEEEEEeeccCCCC-HHHHHHHHhc
Confidence 1 11111111110 0000 1112457899999999 9999998754
No 183
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=98.96 E-value=6.7e-09 Score=89.45 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=56.8
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 104 IMFV-GLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 104 I~iv-G~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
|+++ +..|+||||++..||..+++. |++|.++++|+++..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 5555 555999999999999999997 999999999987552
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
|+||||||+...... ...+..+|.+++|+++..
T Consensus 44 ---D~IIiDtpp~~~~~~---------~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 44 ---DYVVVDLGRSLDEVS---------LAALDQADRVFLVTQQDL 76 (106)
T ss_pred ---CEEEEeCCCCcCHHH---------HHHHHHcCeEEEEecCCh
Confidence 789999988653221 112226799999999874
No 184
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.96 E-value=6.4e-09 Score=94.55 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++.|. +.+...- +.+ . .+....+..+. .. ..
T Consensus 2 ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~~------~-~~~~~~~~~~~-~~----------------~~ 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFT------DDTFDPD----LAA------T-IGVDFKVKTLT-VD----------------GK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCcc----cCC------c-ccceEEEEEEE-EC----------------CE
Confidence 48999999999999999998 4322110 000 0 00000000000 01 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHH---H---HHhc-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQA---Q---AFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~---~---~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.+++.|+||||..... .+ ....+..+|.+++|+|++......... . .+.. .-.+..+|.||+|...
T Consensus 48 ~~~~~l~D~~g~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 48 KVKLAIWDTAGQERFR-----TL--TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred EEEEEEEECCCchhhh-----hh--hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 4678999999963211 11 122334789999999987543322211 1 1211 1123588999999863
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
+....-.... ...+. -.+...+|+..|.| ++.+++.+.+.
T Consensus 121 ~~~~~~~~~~-------------~~~~~--~~~~~~~Sa~~~~g-i~~~~~~~~~~ 160 (161)
T cd01863 121 REVTREEGLK-------------FARKH--NMLFIETSAKTRDG-VQQAFEELVEK 160 (161)
T ss_pred cccCHHHHHH-------------HHHHc--CCEEEEEecCCCCC-HHHHHHHHHHh
Confidence 3211111110 00111 12346789999999 99999887664
No 185
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.95 E-value=6.3e-09 Score=96.26 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=80.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|++||||||+++++. +... +.+.| ........+. ..+
T Consensus 2 i~~~G~~~~GKTsl~~~l~------~~~~-----~~~~~------t~g~~~~~~~----------------------~~~ 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ------GEIP-----KKVAP------TVGFTPTKLR----------------------LDK 42 (167)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCC-----ccccC------cccceEEEEE----------------------ECC
Confidence 7899999999999999998 3311 11111 0000000010 135
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~~~ 256 (495)
+.+.++||||..... .+ .......+|.+++|+|++..... ......+.. ...+..+|.||.|....
T Consensus 43 ~~~~i~D~~G~~~~~-----~~--~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 43 YEVCIFDLGGGANFR-----GI--WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred EEEEEEECCCcHHHH-----HH--HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 778999999963221 11 12334588999999998854321 122222221 12346899999997533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccc----cccCccchhhhccC------CCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEF----EVFDVKPFVSRLLG------MGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l----~~f~p~~~vS~l~G------~Gdi~~L~e~i~~ 310 (495)
.. ....... ..++++ ....+....|+..| .| +..-++++.+
T Consensus 116 ~~-~~~i~~~-----------~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g-~~~~~~wl~~ 166 (167)
T cd04161 116 LL-GADVIEY-----------LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS-IVEGLRWLLA 166 (167)
T ss_pred CC-HHHHHHh-----------cCcccccCCCCceEEEEEeEceeCCCCccccC-HHHHHHHHhc
Confidence 11 1112211 111222 11123345889998 67 8888887753
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.95 E-value=9.9e-09 Score=102.80 Aligned_cols=215 Identities=18% Similarity=0.171 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-HHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+.|+|+|.+|+|||||+++|......- .+..-|..-.....+ .|. .+.....++.+..... .+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i-~~~g~v~~~~~~~~t~~D~-~~~e~~rg~si~~~~~-------------~~~ 67 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHATSDW-MEIEKQRGISVTSSVM-------------QFE 67 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCc-ccCceecccccCCCccCCC-cHHHHhCCCCeEEEEE-------------EEe
Confidence 579999999999999999998532110 011111100000000 000 0111111222111000 112
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~~~ 257 (495)
..++.+.|+||||..... .+ ....+..+|.+++|+|++.+.... ...+.... ..+ ..+++||+|.....
T Consensus 68 ~~~~~i~liDTPG~~df~----~~---~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 68 YRDCVINLLDTPGHEDFS----ED---TYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred eCCEEEEEEECCCchHHH----HH---HHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 347889999999974221 12 222333689999999998764322 12222222 234 58899999975432
Q ss_pred -cchhHH-HHhcCCCeEE----eccCCCcccc---cccCccchhhhccCC-----CC-cHHHHHHHHHhCCCCCchHHhh
Q 011010 258 -GGALSA-VAATKSPVIF----IGTGEHMDEF---EVFDVKPFVSRLLGM-----GD-WSGFMDKIHEVVPMDQQPELLQ 322 (495)
Q Consensus 258 -g~~ls~-~~~~~~PI~f----i~~Ge~i~~l---~~f~p~~~vS~l~G~-----Gd-i~~L~e~i~~~~~~~~~~~~~~ 322 (495)
...++. ....+.|+.. ++.|+.+..+ -......+.. -.|. -+ ...+.|.+.+. -.++.+
T Consensus 140 ~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~-----~~~l~e 213 (267)
T cd04169 140 PLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDEL-----GGDLAE 213 (267)
T ss_pred HHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhc-----CHHHHH
Confidence 222332 2334544332 3344443221 1100101100 0010 00 12333443332 245777
Q ss_pred ccccc-hhcHHHHHHHHHHHhccC
Q 011010 323 KLSEG-NFTLRIMYEQFQNILKMG 345 (495)
Q Consensus 323 ~~~~~-~f~~~d~~~ql~~~~k~g 345 (495)
+...+ +++.+++.+-+..-..-|
T Consensus 214 ~~~e~~~~~~~~~~~~~~~~~~~~ 237 (267)
T cd04169 214 QLREELELLEGAGPEFDQEAFLAG 237 (267)
T ss_pred HHhCCCccchhhhHHHhHHHHHcC
Confidence 77777 688888777666644444
No 187
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.95 E-value=3.2e-09 Score=98.72 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+.|+|+|++||||||+++++. +.+.. +.+.|...+. ... .+ . .. .
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~------~~~~~----~~~~~t~~~~---~~~--~~---~-~~----------------~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV------EGHFV----ESYYPTIENT---FSK--II---R-YK----------------G 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCc----cccCcchhhh---EEE--EE---E-EC----------------C
Confidence 469999999999999999998 43321 1111211000 000 00 0 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||..... .+.. .....++.+++|+|.+..... ......+.. .-.+..+|.||+|..
T Consensus 47 ~~~~~~l~D~~g~~~~~-----~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 47 QDYHLEIVDTAGQDEYS-----ILPQ--KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEEECCChHhhH-----HHHH--HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 24678999999964211 1111 122267889999998754321 111122211 112468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+ ..+. .+...+|+..|.| +..+++++.+.+
T Consensus 120 ~~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (180)
T cd04137 120 TQRQVSTEEG-------------KELAESWG--AAFLESSARENEN-VEEAFELLIEEI 162 (180)
T ss_pred hcCccCHHHH-------------HHHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4211100000 000 0111 2446689999999 999999987765
No 188
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.94 E-value=5.6e-09 Score=94.73 Aligned_cols=108 Identities=11% Similarity=0.019 Sum_probs=60.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... + ....+..+|.+++|+|...... .......+.. .-.+..+|+||+|...
T Consensus 47 ~~~~~i~D~~g~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 47 DVQLNILDTAGQEDYAA-----I--RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEEEECCChhhhhH-----H--HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 46789999999743221 1 1123336788999999765332 1122222221 1123589999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +...++. .|...+|+..|.| ++.+++.+.+.+
T Consensus 120 ~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 161 (164)
T cd04139 120 KRQVSSEEAA------------NLARQWG--VPYVETSAKTRQN-VEKAFYDLVREI 161 (164)
T ss_pred ccccCHHHHH------------HHHHHhC--CeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0001111 2457889999999 999999887654
No 189
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.94 E-value=4.5e-09 Score=95.72 Aligned_cols=107 Identities=15% Similarity=0.017 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHH---HHhccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQ---AFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~---~f~~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||..... .+ .......+|.+++|+|++....... ... .+...-.+..+|.||+|....
T Consensus 48 ~~~l~l~D~~G~~~~~-----~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 48 RVKLQIWDTAGQERFR-----SV--TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred EEEEEEEECcchHHHH-----Hh--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 4678899999963221 11 1123347899999999986433222 111 122112235889999998542
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
......... ....... .+...+|+..|.| +..+++++.+.
T Consensus 121 ~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~~~~~~~~~ 160 (161)
T cd04113 121 REVTFLEAS------------RFAQENG--LLFLETSALTGEN-VEEAFLKCARS 160 (161)
T ss_pred ccCCHHHHH------------HHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHh
Confidence 211011000 0000111 2446789999999 99999887653
No 190
>CHL00071 tufA elongation factor Tu
Probab=98.94 E-value=6.4e-09 Score=110.32 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=68.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+++|||||+++|......-..+.....+ ..|++.. ....++..-.... .+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~------~~d~~~~-e~~rg~T~~~~~~-------------~~~ 71 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYD------EIDSAPE-EKARGITINTAHV-------------EYE 71 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccc------cccCChh-hhcCCEeEEccEE-------------EEc
Confidence 4569999999999999999999554321111111100 0111111 0011111110000 011
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.++..++||||||.. .+...+ ...+..+|.+++|+|+..+... ...+..... ..+...+++||+|...
T Consensus 72 ~~~~~~~~iDtPGh~----~~~~~~---~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 72 TENRHYAHVDCPGHA----DYVKNM---ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred cCCeEEEEEECCChH----HHHHHH---HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 236678999999953 333333 3344478999999999865432 222222222 2343467899999864
No 191
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=98.94 E-value=1.6e-08 Score=107.08 Aligned_cols=41 Identities=34% Similarity=0.367 Sum_probs=36.5
Q ss_pred CeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
..+|+|+. ..||||||++.+||.+|+.+|++|++|++|++.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 46788874 559999999999999999999999999999964
No 192
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.94 E-value=4.5e-09 Score=96.13 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec--cCCCCChHHHHHHHHHHHh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~--~~~~~dp~~ia~~~l~~~~ 180 (495)
.|+++|++||||||+++++. +.+...... + . .+..+.. ....
T Consensus 5 ki~vvG~~~~GKSsli~~l~------~~~~~~~~~----~-------t----~~~~~~~~~~~~~--------------- 48 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFT------RNEFNLDSK----S-------T----IGVEFATRSIQID--------------- 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCCCCC----C-------c----cceEEEEEEEEEC---------------
Confidence 58999999999999999998 443221111 1 0 0111110 0000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||..... .+ .......++.+++|+|++......+ ....+.+ ...+..+|.||+|..
T Consensus 49 ~~~~~~~l~D~~g~~~~~-----~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 49 GKTIKAQIWDTAGQERYR-----AI--TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred CEEEEEEEEeCCChHHHH-----HH--HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 123568899999963211 11 1123347899999999975333222 1222222 113458899999975
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+.. ....+...+|+..|.| +..+++.+.+.+
T Consensus 122 ~~~~~~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~i 164 (165)
T cd01868 122 HLRAVPTEEA-------------KAFAE-KNGLSFIETSALDGTN-VEEAFKQLLTEI 164 (165)
T ss_pred ccccCCHHHH-------------HHHHH-HcCCEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 3211111000 00100 0112345689999999 999999886643
No 193
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.94 E-value=5e-09 Score=96.62 Aligned_cols=155 Identities=13% Similarity=0.038 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++++. +.+...... + ..+..+...... ...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~------~~~~~~~~~-~--------------t~~~~~~~~~~~-------------~~~ 50 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD-L--------------TIGVEFGARMIT-------------IDG 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCCCC-C--------------ccceeEEEEEEE-------------ECC
Confidence 369999999999999999998 433221110 0 001111000000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHH---HHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ---AFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~---~f~~---~~~~~~vIlTK~D~~~ 255 (495)
....+.|+||||.... ..+ .......+|.+++|+|++......+... .... .-.+..+|.||+|...
T Consensus 51 ~~~~~~i~Dt~G~~~~-----~~~--~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 51 KQIKLQIWDTAGQESF-----RSI--TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred EEEEEEEEECCCcHHH-----HHH--HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 2357889999995321 111 1233347899999999885332222221 1211 1123589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... ...... ..+...+|+..|.| +..+++.+.+.+
T Consensus 124 ~~~~~~~~~~------------~~~~~~--~~~~~e~Sa~~~~~-i~~~~~~~~~~~ 165 (168)
T cd01866 124 RREVSYEEGE------------AFAKEH--GLIFMETSAKTASN-VEEAFINTAKEI 165 (168)
T ss_pred ccCCCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111110 000011 12345689999999 999988877654
No 194
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.93 E-value=4.3e-09 Score=96.66 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||++++++ +.+..- .|.+ ..++++....... ...
T Consensus 3 ki~i~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~~-------------~~~ 48 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA------DDSFTS----AFVS-----------TVGIDFKVKTVFR-------------NDK 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-----------ceeeEEEEEEEEE-------------CCE
Confidence 58999999999999999998 433210 0111 0111111000000 012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc---CCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS---VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~---~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||..... .+ .......+|.+++|+|.+...... .....+... ..+..+|.||+|....
T Consensus 49 ~~~~~l~Dt~g~~~~~-----~~--~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 49 RVKLQIWDTAGQERYR-----TI--TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred EEEEEEEECCChHHHH-----HH--HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 4678899999964221 11 122344889999999987432211 122222221 2346999999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ +.+ +.+. .+...+|+..|.| +..|++++.+.+
T Consensus 122 ~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (165)
T cd01865 122 RVVSSERG-------------RQLADQLG--FEFFEASAKENIN-VKQVFERLVDII 162 (165)
T ss_pred cccCHHHH-------------HHHHHHcC--CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 21100000 001 1111 1345689999999 999999987764
No 195
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=98.93 E-value=1.1e-08 Score=102.48 Aligned_cols=39 Identities=31% Similarity=0.267 Sum_probs=36.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+|+|+|..||||||++.+||..|+++|++|++|+.|++-
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~ 40 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKA 40 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 689999999999999999999999999999999999854
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.93 E-value=8.7e-09 Score=113.50 Aligned_cols=184 Identities=16% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++.+|+++|.+|+|||||+++|. +.++. ... ++. .+...+..+................. ..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~------~~~v~--~~e---~gg------iTq~iG~~~v~~~~~~~~~~~~~~~~-~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIR------GSAVA--KRE---AGG------ITQHIGATEIPMDVIEGICGDLLKKF-KI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------ccccc--ccc---CCc------eecccCeeEeeecccccccccccccc-cc
Confidence 35689999999999999999998 55432 110 000 01111111111000000000000000 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
......+.|+||||..... .+. ......+|.+++|+|++.+.. ....+..+.. ..+ ..+++||+|....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~-----~l~--~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~ 136 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFT-----NLR--KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPG 136 (590)
T ss_pred ccccCcEEEEECCCcHhHH-----HHH--HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccch
Confidence 0011348999999963211 121 112237899999999986432 2222333332 244 5899999998531
Q ss_pred cc-----chhHHHHhcCCCe-------------EEeccC---CC---cccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GG-----GALSAVAATKSPV-------------IFIGTG---EH---MDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g-----~~ls~~~~~~~PI-------------~fi~~G---e~---i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ..+......+..+ .+...| +. +.++....|..++|+++|.| ++.|++.+..
T Consensus 137 ~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG-ideLl~~l~~ 213 (590)
T TIGR00491 137 WRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG-IPELLTMLAG 213 (590)
T ss_pred hhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC-hhHHHHHHHH
Confidence 10 0011000000000 000001 11 11233345678899999999 9999988754
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.93 E-value=3.6e-09 Score=112.68 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=40.3
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc--ccc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI--GQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~--g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
+++.+.|+||||... +... +...+..+|.+++|+|+.. +.. .......... ..+...+++||+|...
T Consensus 82 ~~~~i~liDtpG~~~----~~~~---~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRD----FVKN---MITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCccc----chhh---HhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 478899999999632 2121 2222347899999999986 421 1121111111 2233578999999864
No 198
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.93 E-value=2.1e-08 Score=100.47 Aligned_cols=41 Identities=24% Similarity=0.123 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRA 142 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~ 142 (495)
++|+|+|..||||||++.+||..|++ +|+||++|++|++-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~ 44 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKAD 44 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcC
Confidence 57888899999999999999999997 599999999999754
No 199
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.92 E-value=9.3e-09 Score=92.94 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++++. +.+.. +.|.+...+ .....+ . .. ..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~------~~~~~----~~~~~t~~~-------~~~~~~-~-~~----------------~~ 47 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI------QNHFV----DEYDPTIED-------SYRKQV-V-ID----------------GE 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCc----CCcCCcchh-------eEEEEE-E-EC----------------CE
Confidence 48999999999999999998 32211 111111000 000000 0 00 11
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
.+.+.++||||..... . +. ......+|.+++|+|.+......+ ....+.. ...+..+|.||+|...
T Consensus 48 ~~~~~i~Dt~G~~~~~-~----l~--~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 48 TCLLDILDTAGQEEYS-A----MR--DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEEEECCCCcchH-H----HH--HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3456789999964322 1 11 122336788999999874322111 1122221 1224589999999864
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
+......... ....+ ..+...+|+..|.| ++++++++.+.
T Consensus 121 ~~~~~~~~~~-------------~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~ 160 (162)
T cd04138 121 RTVSSRQGQD-------------LAKSY--GIPYIETSAKTRQG-VEEAFYTLVRE 160 (162)
T ss_pred ceecHHHHHH-------------HHHHh--CCeEEEecCCCCCC-HHHHHHHHHHH
Confidence 3211111100 00111 11345689999999 99999988654
No 200
>PRK10037 cell division protein; Provisional
Probab=98.92 E-value=7.2e-09 Score=102.52 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=79.6
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH-------------HHHHh---h-----hhhcCccee
Q 011010 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ---N-----ATKAKIPFY 160 (495)
Q Consensus 103 vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~-------------dqL~~---~-----a~~~~i~~~ 160 (495)
+|++++.- ||||||++.+||..|+++|++|++|++|++..... +.+.. + ....++.+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii 82 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDLL 82 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEEE
Confidence 67777544 99999999999999999999999999999753210 00000 0 001233333
Q ss_pred ccCCCCC-----hH------HHHHHHHHHHhh-cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc
Q 011010 161 GSYTESD-----PV------RIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ 228 (495)
Q Consensus 161 ~~~~~~d-----p~------~ia~~~l~~~~~-~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~ 228 (495)
+...... +. ....+.+..+.. ..||+||||||+..... ...++..+|.+++++.+..
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~---------~~~al~aaD~vlvpv~~~~-- 151 (250)
T PRK10037 83 PFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPL---------TRQLLSLCDHSLAIVNVDA-- 151 (250)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHH---------HHHHHHhCCEEEEEcCcCH--
Confidence 3211100 00 012344555532 57999999999975321 2223336899999998753
Q ss_pred cHHHHHHHHhccC-CceEEEEeCccC
Q 011010 229 AAFDQAQAFKQSV-SVGAVIVTKMDG 253 (495)
Q Consensus 229 ~~~~~~~~f~~~~-~~~~vIlTK~D~ 253 (495)
....+...... ....+++|+++.
T Consensus 152 --~~~i~~~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 152 --NCHIRLHQQALPAGAHILINDLRI 175 (250)
T ss_pred --HHHHhhhccccCCCeEEEEecCCc
Confidence 22222222211 123567888864
No 201
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.92 E-value=9.2e-09 Score=93.48 Aligned_cols=107 Identities=13% Similarity=0.056 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||..... .+.. .....+|.+++|+|.+...... .....+.. ...+..+|.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~--~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 48 QCMLEILDTAGTEQFT-----AMRD--LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEEEEEECCCccccc-----hHHH--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3566789999974322 1111 1223789999999987532211 11122221 1123588999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... +.+ ..+. .|...+|+..|.| +..+++++.+.+
T Consensus 121 ~~~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~~ 162 (163)
T cd04136 121 ERVVSREEG-------------QALARQWG--CPFYETSAKSKIN-VDEVFADLVRQI 162 (163)
T ss_pred cceecHHHH-------------HHHHHHcC--CeEEEecCCCCCC-HHHHHHHHHHhc
Confidence 211111100 111 1111 3456789999999 999999887643
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.92 E-value=4.7e-09 Score=101.87 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=40.6
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-------c--cHHHHHHHHhc-cCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-------Q--AAFDQAQAFKQ-SVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-------~--~~~~~~~~f~~-~~~~~~vIlTK~ 251 (495)
.++.+.|+||||... +. ..+...+..+|.+++|+|++.+ . ........... ..++..+++||+
T Consensus 75 ~~~~i~liDtpG~~~----~~---~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 75 EKYRFTILDAPGHRD----FV---PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred CCeEEEEEECCChHH----HH---HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 478899999999632 22 2233344478999999999863 1 11222221111 224457799999
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
|..
T Consensus 148 Dl~ 150 (219)
T cd01883 148 DDV 150 (219)
T ss_pred ccc
Confidence 986
No 203
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.92 E-value=3.8e-09 Score=116.78 Aligned_cols=151 Identities=21% Similarity=0.137 Sum_probs=85.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEE
Q 011010 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (495)
Q Consensus 108 G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvv 187 (495)
|.|||||||++|+|. |.+. .++. .+.+|......... .++..+.
T Consensus 1 G~pNvGKSSL~N~Lt------g~~~-~v~n-----------~pG~Tv~~~~~~i~------------------~~~~~i~ 44 (591)
T TIGR00437 1 GNPNVGKSTLFNALT------GANQ-TVGN-----------WPGVTVEKKEGKLG------------------FQGEDIE 44 (591)
T ss_pred CCCCCCHHHHHHHHh------CCCC-eecC-----------CCCeEEEEEEEEEE------------------ECCeEEE
Confidence 899999999999998 6553 2332 12222211100000 1245789
Q ss_pred EEeCCCCCcchHH-HHHHHH-HHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHH
Q 011010 188 IVDTSGRHKQEAA-LFEEMR-QVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA 265 (495)
Q Consensus 188 iIDTaG~~~~~~~-l~~el~-~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~ 265 (495)
++||||....... ..+++. ..... ..+|.+++|+|++..+..........+...+..+|+||+|...+.+.....
T Consensus 45 lvDtPG~~~~~~~s~~e~v~~~~l~~-~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~-- 121 (591)
T TIGR00437 45 IVDLPGIYSLTTFSLEEEVARDYLLN-EKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDE-- 121 (591)
T ss_pred EEECCCccccCccchHHHHHHHHHhh-cCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhH--
Confidence 9999997543211 112221 22222 378999999999865443333333322223468999999985433211110
Q ss_pred hcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 266 ATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 266 ~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+.+. .+. .|...+|+..|.| ++++++.+.+..
T Consensus 122 ------------~~L~~~lg--~pvv~tSA~tg~G-i~eL~~~i~~~~ 154 (591)
T TIGR00437 122 ------------EKLEERLG--VPVVPTSATEGRG-IERLKDAIRKAI 154 (591)
T ss_pred ------------HHHHHHcC--CCEEEEECCCCCC-HHHHHHHHHHHh
Confidence 1110 111 2456788888988 888888887653
No 204
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.91 E-value=3.1e-08 Score=104.32 Aligned_cols=44 Identities=27% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEec-cCCcc
Q 011010 99 GKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (495)
Q Consensus 99 ~~~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~~R~ 142 (495)
.++.+|+|+.. .||||||++.+||.+|+++|+||++||+ |++..
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~n 149 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGT 149 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCc
Confidence 34678888744 4999999999999999999999999996 98653
No 205
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.91 E-value=6.8e-09 Score=95.17 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=59.9
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHH---HHHhccCCceEEEEeCccCCCCc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQA---QAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~---~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
+.+.++||||...... . ....+..+|.+++|+|++...... ... ..+.....+..+|.||+|.....
T Consensus 56 ~~~~~~D~~g~~~~~~----~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 56 IKLQIWDTAGQERFRS----I---TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred EEEEEEECCCcHHHHH----H---HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 5578899999632211 1 122344789999999987543221 122 22222222358999999975332
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....... +.+..... .+...+|+..|.| +..+++.+.+.
T Consensus 129 ~i~~~~~-------------~~~~~~~~-~~~~~~Sa~~~~g-v~~l~~~i~~~ 167 (169)
T cd04114 129 EVSQQRA-------------EEFSDAQD-MYYLETSAKESDN-VEKLFLDLACR 167 (169)
T ss_pred ccCHHHH-------------HHHHHHcC-CeEEEeeCCCCCC-HHHHHHHHHHH
Confidence 1111111 11111111 3446789999999 99999998764
No 206
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.91 E-value=9.6e-09 Score=97.75 Aligned_cols=110 Identities=17% Similarity=0.025 Sum_probs=61.9
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHh---c-cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFK---Q-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~---~-~~~~~~vIlTK~D~~~~ 256 (495)
..+.|+||||...... +.. .....+|.+++|+|++........ ...+. . ...+..+|+||+|....
T Consensus 47 ~~l~i~D~~G~~~~~~-----~~~--~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 47 LTLDILDTSGSYSFPA-----MRK--LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred EEEEEEECCCchhhhH-----HHH--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 5678999999743221 211 123378999999998754322211 11111 1 12346999999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... +..... ..........+...+|+..|.| +..+++++.+.+.
T Consensus 120 ~~~-v~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 163 (198)
T cd04147 120 ERQ-VPAKDA-----------LSTVELDWNCGFVETSAKDNEN-VLEVFKELLRQAN 163 (198)
T ss_pred ccc-ccHHHH-----------HHHHHhhcCCcEEEecCCCCCC-HHHHHHHHHHHhh
Confidence 111 111000 0000011112445699999999 9999999988664
No 207
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.90 E-value=1.2e-08 Score=103.44 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCc
Q 011010 78 AIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (495)
Q Consensus 78 ~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i 157 (495)
+-.++|.++++.-... +.....|+++|.+|+||||++|.|. |.+++.++. |.+ ++....
T Consensus 19 ~tq~~l~~~l~~l~~~----~~~~~rIllvGktGVGKSSliNsIl------G~~v~~vs~--f~s---------~t~~~~ 77 (313)
T TIGR00991 19 ATQTKLLELLGKLKEE----DVSSLTILVMGKGGVGKSSTVNSII------GERIATVSA--FQS---------EGLRPM 77 (313)
T ss_pred HHHHHHHHHHHhcccc----cccceEEEEECCCCCCHHHHHHHHh------CCCcccccC--CCC---------cceeEE
Confidence 3445556666543222 1124579999999999999999999 998887765 111 110000
Q ss_pred ceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchH---HHHHHHHHHHHHhcCCCEEEEEe--eCCccc-cHH
Q 011010 158 PFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATVNPDLVIFVM--DSSIGQ-AAF 231 (495)
Q Consensus 158 ~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~---~l~~el~~i~~~i~~~d~vllVv--Da~~g~-~~~ 231 (495)
. .. .. ..++.+.||||||...... ...+.++.+.... .+|.++||. |..... ...
T Consensus 78 ~-~~-~~----------------~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~-g~DvVLyV~rLD~~R~~~~Dk 138 (313)
T TIGR00991 78 M-VS-RT----------------RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGK-TIDVLLYVDRLDAYRVDTLDG 138 (313)
T ss_pred E-EE-EE----------------ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcC-CCCEEEEEeccCcccCCHHHH
Confidence 0 00 00 1377899999999875421 1111122222222 689999994 443221 112
Q ss_pred HHHH----HHhcc-CCceEEEEeCccCCCC
Q 011010 232 DQAQ----AFKQS-VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 232 ~~~~----~f~~~-~~~~~vIlTK~D~~~~ 256 (495)
...+ .|.+. ...+.|++|+.|....
T Consensus 139 qlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 139 QVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 2222 33222 2347999999997643
No 208
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.90 E-value=1.8e-08 Score=92.44 Aligned_cols=149 Identities=20% Similarity=0.141 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++++.. |.-+. +.| + .+..+... . ..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~-----~~~~~------~~p---------t--~g~~~~~~-~----------------~~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL-----GEIVT------TIP---------T--IGFNVETV-E----------------YK 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc-----CCCcc------cCC---------C--CCcceEEE-E----------------EC
Confidence 488999999999999999861 21111 111 0 01111000 0 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHH-hc---cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAF-KQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f-~~---~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||...... + .......+|.++||+|++.... +....... .. ...+..++.||+|...
T Consensus 43 ~~~~~l~D~~G~~~~~~-----~--~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 43 NISFTVWDVGGQDKIRP-----L--WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CEEEEEEECCCCHhHHH-----H--HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 56789999999743211 1 1233458999999999975321 11112211 11 1134589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
... ........+ +..+. .......+|+.+|.| ++++++++.+
T Consensus 116 ~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sak~g~g-v~~~~~~l~~ 158 (159)
T cd04150 116 AMS-AAEVTDKLG-----------LHSLRNRNWYIQATCATSGDG-LYEGLDWLSN 158 (159)
T ss_pred CCC-HHHHHHHhC-----------ccccCCCCEEEEEeeCCCCCC-HHHHHHHHhc
Confidence 321 111111111 11111 011224589999999 9999988753
No 209
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=98.90 E-value=7.7e-09 Score=100.98 Aligned_cols=113 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH---hhhhhcCcce----eccCC-------CCC
Q 011010 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK---QNATKAKIPF----YGSYT-------ESD 167 (495)
Q Consensus 103 vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~---~~a~~~~i~~----~~~~~-------~~d 167 (495)
+|++. |..||||||++.+||..|++.|++|.++++|.+.+.--..+. .+.++.++++ +.... ..+
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 34443 778999999999999999999999999999998765432222 1222223322 11111 111
Q ss_pred hHH--HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 168 PVR--IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 168 p~~--ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
++. ...+++..+. ..+||+||||||.+.. +.. . ... .+|.++-.++.+
T Consensus 82 ~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~~---lsr----~-Ahs-~ADtLiTPlNdS 131 (261)
T PF09140_consen 82 NVEDKRLEQALADLE-GDLDFLVIDTPGTDDR---LSR----V-AHS-MADTLITPLNDS 131 (261)
T ss_dssp HHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-H---HHH----H-HHH-T-SEEEEEEESS
T ss_pred chhHHHHHHHHHHHh-cCCCEEEEeCCCCCcH---HHH----H-HHH-hCCEEEccCchh
Confidence 111 2344455544 5899999999998542 211 1 112 678777766654
No 210
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.90 E-value=8.3e-09 Score=94.98 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++++. +.+. .+.|.+ ..++++...... ...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~------~~~f----~~~~~~-----------t~~~~~~~~~~~-------------~~~ 49 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS------EDSF----NPSFIS-----------TIGIDFKIRTIE-------------LDG 49 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh------hCcC----Cccccc-----------CccceEEEEEEE-------------ECC
Confidence 469999999999999999998 3321 011111 011111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|.||||..... .+ ....+..+|.+++|.|++...... .....+.. .-.+..+|.||+|...
T Consensus 50 ~~~~l~l~D~~g~~~~~-----~~--~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 50 KKIKLQIWDTAGQERFR-----TI--TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred EEEEEEEEeCCchHHHH-----HH--HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 23577899999953211 11 123344889999999987543321 11222221 1124589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +....+. .|...+|+..|.| +..+++++.+.+
T Consensus 123 ~~~~~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-v~~~~~~i~~~~ 164 (167)
T cd01867 123 KRVVSKEEGE------------ALADEYG--IKFLETSAKANIN-VEEAFFTLAKDI 164 (167)
T ss_pred ccCCCHHHHH------------HHHHHcC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111111110 0001111 2446789999999 999999887654
No 211
>PLN03118 Rab family protein; Provisional
Probab=98.89 E-value=6.7e-09 Score=99.84 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|+ +.++.-.+. ..+..+....... .
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~------~~~~~~~~~----------------t~~~~~~~~~~~~-------------~ 58 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFI------SSSVEDLAP----------------TIGVDFKIKQLTV-------------G 58 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCcCC----------------CceeEEEEEEEEE-------------C
Confidence 3469999999999999999998 433211111 1111111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHH-------HHhcc-CCceEEEEeCcc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ-------AFKQS-VSVGAVIVTKMD 252 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~-------~f~~~-~~~~~vIlTK~D 252 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++......+... .+... ..+..+|.||+|
T Consensus 59 ~~~~~l~l~Dt~G~~~~~~-----~--~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 59 GKRLKLTIWDTAGQERFRT-----L--TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred CEEEEEEEEECCCchhhHH-----H--HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 1246789999999743221 1 1122347899999999985432222111 11111 123578999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............. +..... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 132 l~~~~~i~~~~~~------------~~~~~~--~~~~~e~SAk~~~~-v~~l~~~l~~~~ 176 (211)
T PLN03118 132 RESERDVSREEGM------------ALAKEH--GCLFLECSAKTREN-VEQCFEELALKI 176 (211)
T ss_pred ccccCccCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 7533211111000 000001 11335689999999 999999987765
No 212
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.88 E-value=2.4e-08 Score=93.78 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---c-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---Q-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~-~~~~~~vIlTK~D~~~ 255 (495)
++.+.++||||..... .+ .......+|.+++|+|++....... ....+. . ...+..+|+||+|...
T Consensus 51 ~~~l~l~Dt~G~~~~~-----~~--~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 51 GITFHFWDVGGQEKLR-----PL--WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred ceEEEEEECCCcHhHH-----HH--HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 5678999999963211 11 1122447899999999876432111 111111 1 1234699999999753
Q ss_pred Ccc-chhHHHHhcCCCeEEeccCCCcccccc--cCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGG-GALSAVAATKSPVIFIGTGEHMDEFEV--FDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g-~~ls~~~~~~~PI~fi~~Ge~i~~l~~--f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... ..+.... .+.++.. ..+...+|+..|.| ++.|++++.+.+
T Consensus 124 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~SA~~~~g-i~~l~~~l~~~l 169 (183)
T cd04152 124 ALSVSEVEKLL-------------ALHELSASTPWHVQPACAIIGEG-LQEGLEKLYEMI 169 (183)
T ss_pred cCCHHHHHHHh-------------CccccCCCCceEEEEeecccCCC-HHHHHHHHHHHH
Confidence 211 1111110 0111111 12345689999999 999999987765
No 213
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.88 E-value=1.2e-08 Score=92.29 Aligned_cols=153 Identities=18% Similarity=0.101 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++.+. +.+..- .+++ +............. ..
T Consensus 2 ki~i~G~~~~GKStli~~l~------~~~~~~----~~~~---------~~~~~~~~~~~~~~---------------~~ 47 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYV------ENKFNE----KHES---------TTQASFFQKTVNIG---------------GK 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCCC----CcCC---------ccceeEEEEEEEEC---------------CE
Confidence 48999999999999999998 322210 0111 01000000000000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.++||||..... .+.. .....+|.+++|+|++....... ....+.. ...+..+|+||+|....
T Consensus 48 ~~~~~~~D~~g~~~~~-----~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 48 RIDLAIWDTAGQERYH-----ALGP--IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred EEEEEEEECCchHHHH-----HhhH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 3568899999963211 1111 22347899999999875432211 1122222 11245889999998533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.....+... +....+ ..+...+|+..|.| ++.+++++...
T Consensus 121 ~~~~~~~~~------------~~~~~~--~~~~~~~s~~~~~g-i~~~~~~l~~~ 160 (162)
T cd04123 121 RVVSKSEAE------------EYAKSV--GAKHFETSAKTGKG-IEELFLSLAKR 160 (162)
T ss_pred cCCCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 211111110 000011 12345789999999 99999988664
No 214
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.87 E-value=1.3e-08 Score=93.75 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+++.|+||||....... ....+..+|.+++|+|++........ ...+. ... +..+|.||+|...
T Consensus 46 ~~~~~i~Dt~G~~~~~~~-------~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~ 117 (166)
T cd01893 46 RVPTTIVDTSSRPQDRAN-------LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLRD 117 (166)
T ss_pred eEEEEEEeCCCchhhhHH-------HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence 578899999997532221 11223488999999998754332221 11222 223 4589999999854
Q ss_pred Cccch-h-HHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGA-L-SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~-l-s~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... + ... ..+ ..+....+...+|+..|.| ++.+++.+.+.+
T Consensus 118 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~~~~~~ 163 (166)
T cd01893 118 GSSQAGLEEEM-------------LPIMNEFREIETCVECSAKTLIN-VSEVFYYAQKAV 163 (166)
T ss_pred ccchhHHHHHH-------------HHHHHHHhcccEEEEeccccccC-HHHHHHHHHHHh
Confidence 32210 0 000 000 1111122456789999999 999999988764
No 215
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.87 E-value=2.3e-08 Score=105.28 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=37.0
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++++|+|+ ...||||||++.+||.+|+..|++|++|++|++.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 45678887 5559999999999999999999999999999964
No 216
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.86 E-value=1e-08 Score=93.93 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhcc--CCceEEEEeCccCCCCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~--~~~~~vIlTK~D~~~~~ 257 (495)
.+.+.|.||||..... .+ .......+|.+++|+|++..... ......+.+. -.+..+|.||+|.....
T Consensus 48 ~~~~~i~Dt~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~ 120 (161)
T cd04124 48 TILVDFWDTAGQERFQ-----TM--HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV 120 (161)
T ss_pred EEEEEEEeCCCchhhh-----hh--hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH
Confidence 5678899999964221 11 12234488999999998754322 1222233221 12458999999974321
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ..+.+ ....|...+|+..|.| ++.+++.+.+.+
T Consensus 121 ---~~~~-------------~~~~~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 157 (161)
T cd04124 121 ---TQKK-------------FNFAE-KHNLPLYYVSAADGTN-VVKLFQDAIKLA 157 (161)
T ss_pred ---HHHH-------------HHHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0000 00000 0012446789999999 999999887654
No 217
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=98.86 E-value=2.2e-08 Score=105.32 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCCCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEec-cCCc
Q 011010 98 KGKPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFR 141 (495)
Q Consensus 98 ~~~~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~~R 141 (495)
..++.+|+|+.. .||||||++.+||.+|+.+|+||++|++ |++.
T Consensus 103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~ 148 (387)
T PHA02519 103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG 148 (387)
T ss_pred CCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 344678888744 4999999999999999999999999996 9854
No 218
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.85 E-value=7.6e-09 Score=115.55 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=41.0
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.+..++||||||.. .+...+ ...+..+|.+++|+|+..+... ......... ..+...+++||+|...
T Consensus 102 ~~~~~~liDtPG~~----~f~~~~---~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHE----QYTRNM---VTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChH----HHHHHH---HHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 46789999999963 222222 2234488999999999765321 111111111 2234578999999864
No 219
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.85 E-value=1.3e-08 Score=97.06 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=83.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++.+. +.+. .+.|.+ ..+..++......++ ..
T Consensus 2 KivivG~~~vGKTsli~~l~------~~~~----~~~~~~-----------t~~~d~~~~~v~~~~------------~~ 48 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYV------HGIF----SQHYKA-----------TIGVDFALKVIEWDP------------NT 48 (201)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCC----CCCCCC-----------ceeEEEEEEEEEECC------------CC
Confidence 48999999999999999998 3221 011111 001111100000000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHh--------ccCCceEEEEeCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFK--------QSVSVGAVIVTKM 251 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~--------~~~~~~~vIlTK~ 251 (495)
.+.+.|.||||..... .+ .......+|.+++|+|.+........ ...+. ... +..+|.||+
T Consensus 49 ~~~l~l~Dt~G~~~~~-----~~--~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~-piilv~NK~ 120 (201)
T cd04107 49 VVRLQLWDIAGQERFG-----GM--TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPI-PCLLLANKC 120 (201)
T ss_pred EEEEEEEECCCchhhh-----hh--HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCC-cEEEEEECC
Confidence 4678999999973211 11 12233488999999998753321111 11111 123 358999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|............ +.+.....+.+...+|+..|.| ++.+++++.+.+
T Consensus 121 Dl~~~~~~~~~~~-------------~~~~~~~~~~~~~e~Sak~~~~-v~e~f~~l~~~l 167 (201)
T cd04107 121 DLKKRLAKDGEQM-------------DQFCKENGFIGWFETSAKEGIN-IEEAMRFLVKNI 167 (201)
T ss_pred CcccccccCHHHH-------------HHHHHHcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 9853111111111 0010011123446789999999 999999987765
No 220
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.85 E-value=2.4e-08 Score=105.41 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=70.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|..++|||||++.|...+.+.|....... .|... +.-+...|..-..+. .
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~rG~Ti~~~~~~--~--------------- 70 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAP----EEKARGITINTAHVE--Y--------------- 70 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCH----HHHhcCcceeeEEEE--E---------------
Confidence 456999999999999999999866555444222111 12111 111122222211110 1
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
...+..+.|+||||.. .+...+ ...+..+|.+++|+|+..+.. ....+..... ..+...+++||+|...
T Consensus 71 -~~~~~~~~liDtpGh~----~f~~~~---~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 71 -ETENRHYAHVDCPGHA----DYVKNM---ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred -cCCCEEEEEEECCchH----HHHHHH---HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 1135678999999973 222222 323337899999999987532 2222222222 2444346899999864
No 221
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.85 E-value=3e-08 Score=93.25 Aligned_cols=152 Identities=18% Similarity=0.105 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++++.. |.-+. +.| +. +..+.. .. .
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~-----~~~~~------~~~---------T~--~~~~~~-~~----------------~ 58 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL-----GEVVT------TIP---------TI--GFNVET-VE----------------Y 58 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----CCccc------cCC---------cc--ccceEE-EE----------------E
Confidence 3599999999999999999961 22111 101 00 111100 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHH-hc---cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAF-KQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f-~~---~~~~~~vIlTK~D~~ 254 (495)
.++.+.|+||||...... + .......+|.+++|+|++.... .......+ .. .-.+..+|.||.|..
T Consensus 59 ~~~~~~l~D~~G~~~~~~-----~--~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRP-----L--WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred CCEEEEEEECCCCHhHHH-----H--HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 257889999999742211 1 1223348899999999874321 11112222 11 113468999999975
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCccccccc-CccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f-~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ...+....+. +.+... .+...+|+..|.| ++++++++.+.+
T Consensus 132 ~~~~-~~~i~~~l~~-----------~~~~~~~~~~~~~Sa~tg~g-v~e~~~~l~~~i 177 (182)
T PTZ00133 132 NAMS-TTEVTEKLGL-----------HSVRQRNWYIQGCCATTAQG-LYEGLDWLSANI 177 (182)
T ss_pred CCCC-HHHHHHHhCC-----------CcccCCcEEEEeeeCCCCCC-HHHHHHHHHHHH
Confidence 3211 1111211111 111111 1223479999999 999999987654
No 222
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.85 E-value=1.9e-08 Score=104.09 Aligned_cols=121 Identities=34% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc-----chh------------HHHHHhhhhhcCccee
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----AGA------------FDQLKQNATKAKIPFY 160 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R-----~~a------------~dqL~~~a~~~~i~~~ 160 (495)
.+...++|++|+.+|||||+++-|+..+..+|++|+++|+|+-. |+. .+|+...+. .|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~----~Fv 145 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTL----YFV 145 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccce----EEE
Confidence 34567899999999999999999999999999999999999732 332 233332222 223
Q ss_pred ccCCC-CChHHH---HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 161 GSYTE-SDPVRI---AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 161 ~~~~~-~dp~~i---a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
+..+. ..|... +...++.++.. .|+++|||+|.-.... -++....+..++ +||.++++=++.
T Consensus 146 G~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~~-g~elk~~li~~i-kP~~Ii~l~~~~ 211 (398)
T COG1341 146 GSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGWG-GLELKRALIDAI-KPDLIIALERAN 211 (398)
T ss_pred eccCCCCChHHHHHHHHHHHHHhhcc-CCEEEEcCCCceeCch-HHHHHHHHHhhc-CCCEEEEecccc
Confidence 33222 223222 34455555543 7999999999765422 233345567888 999999887764
No 223
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.85 E-value=2.7e-08 Score=112.26 Aligned_cols=129 Identities=20% Similarity=0.148 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec-cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
-+.|+|+|.+|+|||||+++|......- .++.-+.. +++ .|.+. .....++...... ..+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~~~----~D~~~-~e~~rgiti~~~~-------------~~~ 70 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGAAT----MDWME-QEKERGITITSAA-------------TTV 70 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCccc----cCCCH-HHHhcCCCEecce-------------EEE
Confidence 4579999999999999999998532210 01110110 000 00000 0000111111100 011
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
...++.+.|+||||..... .+ ...++..+|.+++|+|+..+.... ...........+..+++||+|...
T Consensus 71 ~~~~~~i~liDTPG~~~~~----~~---~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFT----VE---VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred EECCeEEEEEECCCCcchh----HH---HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 1247889999999986422 12 223334679999999998764332 233322222223588999999863
No 224
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.84 E-value=3.7e-08 Score=100.09 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
.++|.|.|..||||||++.+||..|++.|+||++|++|++-
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 36899999999999999999999999999999999999854
No 225
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.84 E-value=1.9e-08 Score=91.68 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=61.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc--CCceEEEEeCccCCCCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~--~~~~~vIlTK~D~~~~~ 257 (495)
.+.+.+.||||..... .+ ....+..+|.+++|+|.+...... .....+... ..+..+|.||+|.....
T Consensus 51 ~~~l~i~Dt~G~~~~~-----~~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 51 TVELFIFDSAGQELYS-----DM--VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred EEEEEEEECCCHHHHH-----HH--HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 4788999999963221 12 122344899999999987543221 122222221 13468999999985432
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ ... .....+...+|+..|.| +..+++.+.+.+
T Consensus 124 ~~~~~~~~-------------~~~-~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (164)
T cd04101 124 EVTDAQAQ-------------AFA-QANQLKFFKTSALRGVG-YEEPFESLARAF 163 (164)
T ss_pred CCCHHHHH-------------HHH-HHcCCeEEEEeCCCCCC-hHHHHHHHHHHh
Confidence 11100000 000 00112345689999999 999998887653
No 226
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.83 E-value=1.2e-08 Score=110.23 Aligned_cols=65 Identities=28% Similarity=0.297 Sum_probs=41.4
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH-----HHHHHHHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA-----FDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~-----~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+++.++||||||.. .+...+ ...+..+|.+++|+|+..|... ...+..+. .+...+++||+|...
T Consensus 105 ~~~~i~~iDTPGh~----~f~~~~---~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHE----QYTRNM---ATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcH----HHHHHH---HHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeecccc
Confidence 46789999999942 233332 2223488999999999865321 12222222 344578999999863
No 227
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.83 E-value=3.1e-09 Score=97.35 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=83.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.|. +.+. ...+.+...+ ... .... .. ..
T Consensus 2 ki~i~G~~~~GKSsli~~l~------~~~~----~~~~~~~~~~-------~~~-~~~~-~~----------------~~ 46 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYT------TGKF----PTEYVPTVFD-------NYS-ATVT-VD----------------GK 46 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCC----CCCCCCceee-------eeE-EEEE-EC----------------CE
Confidence 48999999999999999998 3332 0111110000 000 0000 00 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc--CCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~--~~~~~vIlTK~D~~~~ 256 (495)
.+.+.++||||...... +.. .....+|.+++|+|++........ ...+... ..+..+|.||+|....
T Consensus 47 ~~~l~~~D~~g~~~~~~-----~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 47 QVNLGLWDTAGQEEYDR-----LRP--LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred EEEEEEEeCCCcccccc-----cch--hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 56789999999753211 110 122378999999998753322221 1112211 1345999999997544
Q ss_pred ccchhHHHHhcCCCeEEeccC--CCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTG--EHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~G--e~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.... ... +..-..+... ..+.......+...+|+..|.| +.++++++.+
T Consensus 120 ~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~ 170 (171)
T cd00157 120 ENTL-KKL---EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG-VKEVFEEAIR 170 (171)
T ss_pred hhhh-hhc---ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC-HHHHHHHHhh
Confidence 2211 000 0000001000 1111111122456789999999 9999988764
No 228
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.83 E-value=2e-08 Score=95.72 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.++ +.+.. +.|.+ ..++.+....... ..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~~-------------~~ 52 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA------DNTFS----GSYIT-----------TIGVDFKIRTVEI-------------NG 52 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCc-----------cccceeEEEEEEE-------------CC
Confidence 469999999999999999998 43221 11111 0111111000000 00
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc--CCceEEEEeCccCCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~--~~~~~vIlTK~D~~~~ 256 (495)
..+.+.|+||||..... .+ .......+|.+++|+|++....... ....+... ..+..+|.||+|....
T Consensus 53 ~~~~l~l~D~~G~~~~~-----~~--~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 53 ERVKLQIWDTAGQERFR-----TI--TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred EEEEEEEEeCCCchhHH-----HH--HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 13567899999963221 11 1123347899999999875432221 22222221 1235889999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ +.+ ..+. .+...+|+..|.| +..+++++.+.+
T Consensus 126 ~~~~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~g-i~~lf~~l~~~~ 166 (199)
T cd04110 126 KVVETEDA-------------YKFAGQMG--ISLFETSAKENIN-VEEMFNCITELV 166 (199)
T ss_pred cccCHHHH-------------HHHHHHcC--CEEEEEECCCCcC-HHHHHHHHHHHH
Confidence 21111111 001 0111 2346689999999 999999987765
No 229
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.83 E-value=3.9e-08 Score=92.47 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=82.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++++.. +.-+ . +.| + .++.+... ..+
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~-----~~~~---~---~~p---------t--~g~~~~~~-----------------~~~ 59 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKL-----GEIV---T---TIP---------T--IGFNVETV-----------------EYK 59 (181)
T ss_pred EEEEECCCCCCHHHHHHHHcc-----CCCc---c---ccC---------C--cceeEEEE-----------------EEC
Confidence 599999999999999999861 2111 0 011 0 01111100 012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
++.+.|.||||..... .+ .......+|.++||+|++..... ......+.. .-.+..+|.||+|...
T Consensus 60 ~~~~~i~D~~Gq~~~~-----~~--~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 60 NISFTVWDVGGQDKIR-----PL--WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CEEEEEEECCCCHHHH-----HH--HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 5778999999963211 11 12233488999999999853321 112222211 1124589999999754
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccC-ccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~-p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... .-......+ ++.+.+-. ....+|+..|.| +.++++++.+.+
T Consensus 133 ~~~-~~~~~~~l~-----------l~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 177 (181)
T PLN00223 133 AMN-AAEITDKLG-----------LHSLRQRHWYIQSTCATSGEG-LYEGLDWLSNNI 177 (181)
T ss_pred CCC-HHHHHHHhC-----------ccccCCCceEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 321 111111111 11111101 122479999999 999999987654
No 230
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.83 E-value=2.8e-08 Score=109.57 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++.+|+++|.+|+|||||+++|. +.++.--. .+ ..|+. +..+....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~------~~~v~~~e----~~--------GIT~~-ig~~~v~~--------------- 131 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR------KTKVAQGE----AG--------GITQH-IGAYHVEN--------------- 131 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH------hCCccccc----CC--------ceeec-ceEEEEEE---------------
Confidence 45689999999999999999997 44443111 00 01111 10011000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
..+..+.|+||||...... +. ......+|.+++|+|+..+.. ..+.+..... .+| ..+++||+|....
T Consensus 132 -~~~~~i~~iDTPGhe~F~~-----~r--~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~ 202 (587)
T TIGR00487 132 -EDGKMITFLDTPGHEAFTS-----MR--ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEA 202 (587)
T ss_pred -CCCcEEEEEECCCCcchhh-----HH--HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccC
Confidence 0123789999999743221 11 122337899999999886432 2222222222 244 6899999998432
Q ss_pred c-cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~-g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
. ......+...+. ....+....+..++|++.|.| +..|++++..
T Consensus 203 ~~e~v~~~L~~~g~---------~~~~~~~~~~~v~iSAktGeG-I~eLl~~I~~ 247 (587)
T TIGR00487 203 NPDRVKQELSEYGL---------VPEDWGGDTIFVPVSALTGDG-IDELLDMILL 247 (587)
T ss_pred CHHHHHHHHHHhhh---------hHHhcCCCceEEEEECCCCCC-hHHHHHhhhh
Confidence 1 112222221110 001111123456799999999 9999998854
No 231
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.83 E-value=5.4e-09 Score=96.42 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHH---hccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAF---KQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f---~~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... +.. .....+|.+++|+|.+......+. ...+ ....+ ..+|.||+|...
T Consensus 47 ~~~~~i~Dt~G~~~~~~-----~~~--~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~ 118 (174)
T cd04135 47 QYLLGLYDTAGQEDYDR-----LRP--LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRD 118 (174)
T ss_pred EEEEEEEeCCCcccccc-----ccc--ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhc
Confidence 46678999999743221 111 123377999999998754321111 1122 22233 588999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.....-........++. ...++.+..-....+...+|++.|.| ++.+++.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~g-i~~~f~~~~~~ 172 (174)
T cd04135 119 DPKTLARLNDMKEKPVT-VEQGQKLAKEIGAHCYVECSALTQKG-LKTVFDEAILA 172 (174)
T ss_pred ChhhHHHHhhccCCCCC-HHHHHHHHHHcCCCEEEEecCCcCCC-HHHHHHHHHHH
Confidence 33221111111111111 00111111101112345689999999 99999988664
No 232
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.83 E-value=3e-08 Score=109.57 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+.|+|+|..++|||||+.+|...... +...+.--..|. .......++.+..... .+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~---------~~~ErerGiTI~~~~~-------------~v 59 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDS---------NDLERERGITILAKNT-------------AI 59 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccC---------chHHHhCCccEEeeeE-------------EE
Confidence 36999999999999999999854321 111111001111 1111122332222111 01
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHH-hccCCceEEEEeCccCCC-
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGHA- 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~~~~vIlTK~D~~~- 255 (495)
...++.+.||||||.. ++..++... +..+|.+++|+|+..+.... ..+... ...++ ..+++||+|...
T Consensus 60 ~~~~~kinlIDTPGh~----DF~~ev~~~---l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a 131 (594)
T TIGR01394 60 RYNGTKINIVDTPGHA----DFGGEVERV---LGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSA 131 (594)
T ss_pred EECCEEEEEEECCCHH----HHHHHHHHH---HHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc
Confidence 1247889999999973 233333333 33679999999998654321 122222 22345 489999999743
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCC---------CcHHHHHHHHHhCCC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG---------DWSGFMDKIHEVVPM 314 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~G---------di~~L~e~i~~~~~~ 314 (495)
+....+..+... |...|..-+. ...|..++|+..|.+ ++..|++.+.+.+|.
T Consensus 132 ~~~~v~~ei~~l-----~~~~g~~~e~--l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 132 RPDEVVDEVFDL-----FAELGADDEQ--LDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred CHHHHHHHHHHH-----HHhhcccccc--ccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 222222211100 0001111011 113566778877752 389999999998863
No 233
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.82 E-value=2.4e-08 Score=112.10 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.++.+|+|+|.+|+|||||+++|. +..+..- +. ...+. .+..+......
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~------~~~~~~~-----e~-------~GiTq-~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIR------KTQIAQK-----EA-------GGITQ-KIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH------hccCccc-----cC-------Ccccc-ccceEEEEEEe------------
Confidence 356689999999999999999997 3322210 00 00000 00111100000
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
...++.+.|+||||... +.... ...+..+|.+++|+|+..+.. ..+.+......--+..+++||+|....
T Consensus 291 -~~~~~kItfiDTPGhe~----F~~mr---~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 291 -KDENQKIVFLDTPGHEA----FSSMR---SRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred -cCCceEEEEEECCcHHH----HHHHH---HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc
Confidence 01257899999999632 21111 122337899999999986532 222233333222236899999998542
Q ss_pred c-cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~-g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
. ......+...+. -.+.+....|..++|+..|.| +..|++.+....
T Consensus 363 ~~e~v~~eL~~~~l---------l~e~~g~~vpvv~VSAktG~G-IdeLle~I~~l~ 409 (742)
T CHL00189 363 NTERIKQQLAKYNL---------IPEKWGGDTPMIPISASQGTN-IDKLLETILLLA 409 (742)
T ss_pred CHHHHHHHHHHhcc---------chHhhCCCceEEEEECCCCCC-HHHHHHhhhhhh
Confidence 1 111111111100 001112234667899999999 999999887653
No 234
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.82 E-value=3.2e-08 Score=90.87 Aligned_cols=105 Identities=16% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc-------cCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ-------SVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~-------~~~~~~vIlTK~D 252 (495)
.+.+.++||||...... +.. .....+|.+++|.|.+....... ....+.+ ..| ..+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~~--~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (165)
T cd04140 48 ICTLQITDTTGSHQFPA-----MQR--LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCD 119 (165)
T ss_pred EEEEEEEECCCCCcchH-----HHH--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECcc
Confidence 46788999999754221 111 12237899999999875443211 1111211 233 589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
............ ..... ..-.+...+|+..|.| +..+++++.+
T Consensus 120 l~~~~~v~~~~~-------------~~~~~-~~~~~~~e~SA~~g~~-v~~~f~~l~~ 162 (165)
T cd04140 120 ESHKREVSSNEG-------------AACAT-EWNCAFMETSAKTNHN-VQELFQELLN 162 (165)
T ss_pred ccccCeecHHHH-------------HHHHH-HhCCcEEEeecCCCCC-HHHHHHHHHh
Confidence 854211000000 00000 0011235689999999 9999998864
No 235
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.82 E-value=5.9e-09 Score=96.15 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... +.. .....+|.+++|.|.+......+. ...+. ...+ ..+|.||+|...
T Consensus 45 ~~~~~i~Dt~G~~~~~~-----~~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 116 (174)
T smart00174 45 PVELGLWDTAGQEDYDR-----LRP--LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLRE 116 (174)
T ss_pred EEEEEEEECCCCcccch-----hch--hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhh
Confidence 46789999999642211 111 123478999999998754322221 11222 2234 599999999864
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..............+|. ...++.+..-..+.+...+|+..|.| ++.+++.+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~~ 171 (174)
T smart00174 117 DKSTLRELSKQKQEPVT-YEQGEALAKRIGAVKYLECSALTQEG-VREVFEEAIRAA 171 (174)
T ss_pred ChhhhhhhhcccCCCcc-HHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHHHh
Confidence 32211111110111110 00111111111122345689999999 999999887653
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.82 E-value=2.1e-08 Score=106.32 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=41.3
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.++.+.||||||.. .+...+ ...+..+|.+++|+|+..|.... +.+..... ..+...+++||+|...
T Consensus 78 ~~~~~~liDtPGh~----~f~~~~---~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 78 DKRKFIVADTPGHE----QYTRNM---ATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred CCeEEEEEeCCCHH----HHHHHH---HHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 46789999999953 233333 22334789999999998663221 11221111 2343478999999864
No 237
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.82 E-value=4.9e-08 Score=96.81 Aligned_cols=42 Identities=29% Similarity=0.276 Sum_probs=36.4
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHH-HcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~-GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~~R~ 142 (495)
+.+|+|+..- ||||||++.+||.+|+ .+|+||++|+.|++..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 4578888776 9999999999999999 5569999999999743
No 238
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.82 E-value=3e-08 Score=90.10 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||..... .+ .......+|.+++|.|++....... ....+. ...| ..+|.||+|....
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~--~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 121 (162)
T cd04106 50 DVRLMLWDTAGQEEFD-----AI--TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQ 121 (162)
T ss_pred EEEEEEeeCCchHHHH-----Hh--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccc
Confidence 4678999999953211 11 1123348899999999875432111 112222 2344 5899999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
........ +.+ ..+. .|...+|+..|.| ++.+++.+.+
T Consensus 122 ~~v~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~ 160 (162)
T cd04106 122 AVITNEEA-------------EALAKRLQ--LPLFRTSVKDDFN-VTELFEYLAE 160 (162)
T ss_pred cCCCHHHH-------------HHHHHHcC--CeEEEEECCCCCC-HHHHHHHHHH
Confidence 21111110 001 1111 1345688899998 9998888754
No 239
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.81 E-value=2.6e-08 Score=94.05 Aligned_cols=107 Identities=10% Similarity=0.028 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc------cCCceEEEEeCccC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVTKMDG 253 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~------~~~~~~vIlTK~D~ 253 (495)
.+.+.|+||||..... .+.. .....+|.+++|+|.+..... ......+.. ...+..+|.||+|.
T Consensus 46 ~~~l~i~Dt~G~~~~~-----~~~~--~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl 118 (190)
T cd04144 46 PCMLEVLDTAGQEEYT-----ALRD--QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred EEEEEEEECCCchhhH-----HHHH--HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence 3557899999963221 1111 123378999999998754321 112222211 11235889999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +.. ..+. .+...+|+..|.| +..+++.+.+.+
T Consensus 119 ~~~~~v~~~~~-------------~~~~~~~~--~~~~e~SAk~~~~-v~~l~~~l~~~l 162 (190)
T cd04144 119 VYEREVSTEEG-------------AALARRLG--CEFIEASAKTNVN-VERAFYTLVRAL 162 (190)
T ss_pred cccCccCHHHH-------------HHHHHHhC--CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 53211000000 011 1111 1345689999999 999998886643
No 240
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.81 E-value=2.7e-08 Score=109.86 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=38.2
Q ss_pred cEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhcc-CCceEEEEeCccCC
Q 011010 185 DLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQS-VSVGAVIVTKMDGH 254 (495)
Q Consensus 185 dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~-~~~~~vIlTK~D~~ 254 (495)
.+.|+||||..... .+. ......+|.+++|+|++.+. .....+..+... .+ ..+++||+|..
T Consensus 72 ~i~~iDTPG~e~f~-----~~~--~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEAFT-----NLR--KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRI 136 (586)
T ss_pred CEEEEECCChHHHH-----HHH--HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCc
Confidence 37899999974321 111 12223689999999998642 222223333322 44 58999999975
No 241
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.81 E-value=2e-08 Score=94.91 Aligned_cols=109 Identities=12% Similarity=0.000 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||..... .+ ....+..+|.+++|+|++..... ......+.+ ...+..+|.||+|....
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~~--~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 49 KVKLQIWDTAGQERFR-----SV--THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE 121 (191)
T ss_pred EEEEEEEeCCCcHHHH-----Hh--hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc
Confidence 4578899999953211 11 12234478999999998753221 111122221 11245889999998532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
........ +.+... ...|...+|+..|.| +..|++++.+.+.
T Consensus 122 ~~~~~~~~-------------~~l~~~-~~~~~~e~Sa~~~~~-v~~l~~~l~~~~~ 163 (191)
T cd04112 122 RVVKREDG-------------ERLAKE-YGVPFMETSAKTGLN-VELAFTAVAKELK 163 (191)
T ss_pred cccCHHHH-------------HHHHHH-cCCeEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 11000111 111000 012456789999999 9999999987763
No 242
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.81 E-value=3.2e-08 Score=111.99 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.++.+|+|+|..|+|||||++.|. +.++. +. .++ ..+. .+..+...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~-e~~---------GIT~-~iga~~v~--------------- 333 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AG-EAG---------GITQ-HIGAYQVE--------------- 333 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--cc-ccC---------ceee-eccEEEEE---------------
Confidence 456789999999999999999996 43332 11 010 0011 01111110
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
..++.+.|+||||...... +. ......+|.++||+|+..+.. ....+..... .++ ..|++||+|...
T Consensus 334 --~~~~~ItfiDTPGhe~F~~-----m~--~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~ 403 (787)
T PRK05306 334 --TNGGKITFLDTPGHEAFTA-----MR--ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPG 403 (787)
T ss_pred --ECCEEEEEEECCCCccchh-----HH--HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccc
Confidence 1256789999999743221 11 122336899999999986532 2222222222 244 589999999853
Q ss_pred Cc-cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KG-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~-g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ......+...+. ..+++....|.+++|++.|.| +..|++.+..
T Consensus 404 a~~e~V~~eL~~~~~---------~~e~~g~~vp~vpvSAktG~G-I~eLle~I~~ 449 (787)
T PRK05306 404 ANPDRVKQELSEYGL---------VPEEWGGDTIFVPVSAKTGEG-IDELLEAILL 449 (787)
T ss_pred cCHHHHHHHHHHhcc---------cHHHhCCCceEEEEeCCCCCC-chHHHHhhhh
Confidence 21 112222221110 011122224667899999999 9999998864
No 243
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.80 E-value=2.9e-08 Score=92.17 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=60.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc----CCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS----VSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~----~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||.... ..+ ....+..+|.+++|.|++......+ ....+... ..+..+|.||+|...
T Consensus 62 ~~~~~i~Dt~G~~~~-----~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 62 RIHLQLWDTAGQERF-----RSL--TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEEEEEEeCCChHHH-----HHH--HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 466889999995321 111 1223448899999999875433222 12222221 234589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....-.+... +....+. .|...+|+..|.| ++.+++.+.+.
T Consensus 135 ~~~v~~~~~~------------~~~~~~~--~~~~e~Sak~~~~-v~~l~~~l~~~ 175 (180)
T cd04127 135 QRQVSEEQAK------------ALADKYG--IPYFETSAATGTN-VEKAVERLLDL 175 (180)
T ss_pred cCccCHHHHH------------HHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHH
Confidence 2111001010 0001111 2446789999999 99999988654
No 244
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.80 E-value=3.4e-08 Score=98.35 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++|+|+|..||||||++.+||..|++.| +|+++++|++.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~ 41 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKA 41 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCc
Confidence 5788889999999999999999999999 99999999864
No 245
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.80 E-value=9.8e-09 Score=94.78 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|++||||||+++++. +..- .+.|.+...+. ....+. .. ..
T Consensus 3 ki~iiG~~~~GKTsl~~~~~------~~~~----~~~~~~t~~~~-------~~~~~~--~~----------------~~ 47 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFS------KDQF----PEVYVPTVFEN-------YVADIE--VD----------------GK 47 (175)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCccccc-------eEEEEE--EC----------------CE
Confidence 59999999999999999988 2110 01122210000 000000 00 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... +. ......+|.+++|.|........+ ....+. ...| ..+|.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~--~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 119 (175)
T cd01870 48 QVELALWDTAGQEDYDR-----LR--PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRN 119 (175)
T ss_pred EEEEEEEeCCCchhhhh-----cc--ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhccc
Confidence 46789999999632111 11 012347899998888764322111 112222 2334 589999999753
Q ss_pred CccchhHHHHh-cCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAA-TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~-~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
... ....... ...++.. ..|+.+..-....+...+|+..|.| ++.+++++.+.
T Consensus 120 ~~~-~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~ 173 (175)
T cd01870 120 DEH-TRRELAKMKQEPVKP-EEGRDMANKIGAFGYMECSAKTKEG-VREVFEMATRA 173 (175)
T ss_pred Chh-hhhhhhhccCCCccH-HHHHHHHHHcCCcEEEEeccccCcC-HHHHHHHHHHH
Confidence 311 1111110 1111110 0111111111122456799999999 99999988754
No 246
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.80 E-value=3.9e-08 Score=108.83 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhccCCceEEEEeCccCCCCc-c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQSVSVGAVIVTKMDGHAKG-G 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~~~~~~vIlTK~D~~~~~-g 258 (495)
.+.+.|+||||.... ..+.. ..+..+|.+++|+|++.+..... ........++ ..+|+||+|..... .
T Consensus 69 ~~~l~liDTPG~~dF----~~~v~---~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~~ 140 (595)
T TIGR01393 69 TYVLNLIDTPGHVDF----SYEVS---RSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSADPE 140 (595)
T ss_pred EEEEEEEECCCcHHH----HHHHH---HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCHH
Confidence 477899999998532 22222 23337899999999987643322 2222333344 58999999975321 1
Q ss_pred chhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. ..+. .+.+..++|+..|.| +..|++.+.+.++.
T Consensus 141 ~~~~el~~~lg~---------------~~~~vi~vSAktG~G-I~~Lle~I~~~lp~ 181 (595)
T TIGR01393 141 RVKKEIEEVIGL---------------DASEAILASAKTGIG-IEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHHHhCC---------------CcceEEEeeccCCCC-HHHHHHHHHHhCCC
Confidence 1111111 1111 112346799999999 99999999988863
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.79 E-value=2.4e-08 Score=87.20 Aligned_cols=105 Identities=13% Similarity=-0.025 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHH-------HHHhccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQA-------QAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~-------~~f~~~~~~~~vIlTK~D~~~ 255 (495)
.+++.++||||........ ......+|.+++|+|++......... ........+..+|+||+|...
T Consensus 44 ~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR-------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEEEEecCChHHHHhHH-------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 5788999999974332211 22334789999999998654322211 111222334699999999865
Q ss_pred CccchhHH-HHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHH
Q 011010 256 KGGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 256 ~~g~~ls~-~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
........ .. ........+...+|+..|.| +..+++++.
T Consensus 117 ~~~~~~~~~~~--------------~~~~~~~~~~~~~s~~~~~~-i~~~~~~l~ 156 (157)
T cd00882 117 ERVVSEEELAE--------------QLAKELGVPYFETSAKTGEN-VEELFEELA 156 (157)
T ss_pred ccchHHHHHHH--------------HHHhhcCCcEEEEecCCCCC-hHHHHHHHh
Confidence 43222110 00 00011223456678888888 888888764
No 248
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.79 E-value=3.3e-08 Score=90.39 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=59.6
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHh-----ccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFK-----QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~-----~~~~~~~vIlTK~D~~ 254 (495)
.+.+.|+||||...... +... ....+|.+++|+|.+.... ..+....+. ...| ..+|.||+|..
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTA-----MRDL--YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchh-----HHHH--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcch
Confidence 45667999999743221 1111 2236799999999864322 111222221 1233 58999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+ ..+ ..+...+|+..|.| +..+++++.+.+
T Consensus 120 ~~~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~~~~~l~~~l 162 (164)
T cd04175 120 DERVVGKEQG-------------QNLARQW--GCAFLETSAKAKIN-VNEIFYDLVRQI 162 (164)
T ss_pred hccEEcHHHH-------------HHHHHHh--CCEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 4321110000 011 011 12446789999999 999999887654
No 249
>PRK00007 elongation factor G; Reviewed
Probab=98.79 E-value=5.1e-08 Score=110.00 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
-+.|+|+|.+|+|||||+++|+.+...- .++.-++.... ..|.+. .....++....... .+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~g~v~~~~~---~~D~~~-~E~~rg~ti~~~~~-------------~~~ 71 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVN-HKIGEVHDGAA---TMDWME-QEQERGITITSAAT-------------TCF 71 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCc-cccccccCCcc---cCCCCH-HHHhCCCCEeccEE-------------EEE
Confidence 4579999999999999999998543321 11111211000 000000 00111111111000 111
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
..++.+.||||||... ...+ +..++..+|.+++|+|+..|.... ..+..... ..+ ..+++||+|...
T Consensus 72 ~~~~~~~liDTPG~~~----f~~e---v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~ 141 (693)
T PRK00007 72 WKDHRINIIDTPGHVD----FTIE---VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTG 141 (693)
T ss_pred ECCeEEEEEeCCCcHH----HHHH---HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 2478899999999742 2223 333444679999999998764322 22333322 344 479999999863
No 250
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.79 E-value=3e-08 Score=86.92 Aligned_cols=87 Identities=23% Similarity=0.225 Sum_probs=57.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcce---eccCC-----CCChH-HHHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF---YGSYT-----ESDPV-RIAVE 174 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~---~~~~~-----~~dp~-~ia~~ 174 (495)
|++.|.+|+||||++..|+.+++++|++|.++++|+ +...+.+..... ..++ .+..+ ...+. ....+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~--~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG--EIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC--CceEEEEecccccCCCCCEehhhHHHHH
Confidence 789999999999999999999999999999999999 222222221111 1111 11110 00011 24566
Q ss_pred HHHHHhhcCCcEEEEeCCCC
Q 011010 175 GVETFKKENCDLIIVDTSGR 194 (495)
Q Consensus 175 ~l~~~~~~~~dvviIDTaG~ 194 (495)
.+.++...++|++++||++-
T Consensus 78 ~l~~~~~~~~~~vivDt~ag 97 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAG 97 (116)
T ss_pred HHHHeEccCCCEEEEecHHH
Confidence 66666667999999999654
No 251
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.78 E-value=3.7e-08 Score=95.04 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
.+.+.|+||||...... . ....+..+|.+++|+|++.+.... ...........+..+|+||+|..
T Consensus 70 ~~~i~iiDtpG~~~f~~----~---~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMD----E---VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHH----H---HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 57789999999753221 1 222233789999999998654322 22222221223458999999975
No 252
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.78 E-value=3.3e-08 Score=90.78 Aligned_cols=107 Identities=15% Similarity=0.007 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||||..... .+ .......+|.+++|+|++....... ...... ....+..+|.||+|....
T Consensus 50 ~~~l~i~Dt~G~~~~~-----~~--~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 50 KIKLQIWDTAGQERFR-----AV--TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred EEEEEEEECCCcHHHH-----HH--HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 4678899999963211 11 1223448899999999985432211 111111 112346889999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
......... +..... ..+...+|+..|.| +.++++.+...
T Consensus 123 ~~~~~~~~~------------~~~~~~--~~~~~e~Sa~~~~~-i~e~f~~l~~~ 162 (166)
T cd04122 123 RDVTYEEAK------------QFADEN--GLLFLECSAKTGEN-VEDAFLETAKK 162 (166)
T ss_pred cCcCHHHHH------------HHHHHc--CCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 211001110 000111 12445689999999 98888776543
No 253
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.78 E-value=2.7e-08 Score=109.96 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+++|.+|+||||++++|. |.. .|.+.. .-+...+. .+.+.. .. ..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~e----E~~rGiTi-d~~~~~-~~----------------~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLPE----EKKRGMTI-DLGFAY-FP----------------LP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCChh----HhcCCceE-EeEEEE-EE----------------eC
Confidence 68999999999999999998 543 222110 00111111 111110 00 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g~ 259 (495)
++.+.|+||||.. .+.. .....+..+|.+++|+|+..+.. ..+.+..+.. .++...+|+||+|.....
T Consensus 49 ~~~v~~iDtPGhe----~f~~---~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-- 119 (581)
T TIGR00475 49 DYRLGFIDVPGHE----KFIS---NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-- 119 (581)
T ss_pred CEEEEEEECCCHH----HHHH---HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH--
Confidence 4678999999952 2222 23333448899999999987532 2222222221 234258999999986432
Q ss_pred hhHHHHhcCCCeEEeccCCCccc--ccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDE--FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~--l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.+......-. +.+.. +....|.+++|+..|.| ++.|.+.+.+.++
T Consensus 120 ~~~~~~~ei~--------~~l~~~~~~~~~~ii~vSA~tG~G-I~eL~~~L~~l~~ 166 (581)
T TIGR00475 120 EIKRTEMFMK--------QILNSYIFLKNAKIFKTSAKTGQG-IGELKKELKNLLE 166 (581)
T ss_pred HHHHHHHHHH--------HHHHHhCCCCCCcEEEEeCCCCCC-chhHHHHHHHHHH
Confidence 1111100000 00001 11124667889999999 9999888877653
No 254
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.77 E-value=2.4e-08 Score=96.38 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++|. +... ...|.+ ..+++++......+ ...
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~------~~~~----~~~~~~-----------T~~~d~~~~~i~~~------------~~~ 48 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFA------KEGF----GKSYKQ-----------TIGLDFFSKRVTLP------------GNL 48 (215)
T ss_pred EEEEECcCCCCHHHHHHHHh------cCCC----CCCCCC-----------ceeEEEEEEEEEeC------------CCC
Confidence 48999999999999999998 3221 011111 01111111000000 001
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc------CCceEEEEeCccC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS------VSVGAVIVTKMDG 253 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~------~~~~~vIlTK~D~ 253 (495)
.+.+.|.||||..... .+ .......+|.+++|+|++....... ....+.+. ..+..+|.||+|.
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~l--~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 49 NVTLQVWDIGGQSIGG-----KM--LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEEEEECCCcHHHH-----HH--HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 4677899999963211 12 1122348999999999875322111 11222211 1245789999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +.+..... .+...+|+..|.| +..+++++.+.+
T Consensus 122 ~~~~~v~~~~~-------------~~~~~~~~-~~~~~iSAktg~g-v~~lf~~l~~~l 165 (215)
T cd04109 122 EHNRTVKDDKH-------------ARFAQANG-MESCLVSAKTGDR-VNLLFQQLAAEL 165 (215)
T ss_pred ccccccCHHHH-------------HHHHHHcC-CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 53211000000 11100001 2345689999999 999999887654
No 255
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=100.55 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc-CcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~-~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
-+.+||.||+||||++++|. ..|..|.+- ++||.. .+-+ ..+ .
T Consensus 198 dvGLVG~PNAGKSTLL~als------~AKpkVa~Y------------aFTTL~P~iG~-v~y-----------------d 241 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALS------RAKPKVAHY------------AFTTLRPHIGT-VNY-----------------D 241 (366)
T ss_pred ccceecCCCCcHHHHHHHhh------ccCCccccc------------ceeeeccccce-eec-----------------c
Confidence 37899999999999999999 555543332 222211 1110 001 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcccc--HHH-------HHHHHhcc--CCceEEEEe
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQA--AFD-------QAQAFKQS--VSVGAVIVT 249 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~--~~~-------~~~~f~~~--~~~~~vIlT 249 (495)
+.-++.+-|-||+-... .+..-| -+..+-++.++..+||||.+.++. +.. .++.|.+. ..+..+|+|
T Consensus 242 df~q~tVADiPGiI~GA-h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaN 320 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGA-HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVAN 320 (366)
T ss_pred ccceeEeccCccccccc-cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEe
Confidence 23348899999974322 111222 234445557899999999987632 211 23344443 245799999
Q ss_pred CccCCCCccchhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 250 KMDGHAKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
|+|........++.+. .+..| ..+++|+..|+| +..|++.+.+.
T Consensus 321 KiD~~eae~~~l~~L~~~lq~~-----------------~V~pvsA~~~eg-l~~ll~~lr~~ 365 (366)
T KOG1489|consen 321 KIDLPEAEKNLLSSLAKRLQNP-----------------HVVPVSAKSGEG-LEELLNGLREL 365 (366)
T ss_pred ccCchhHHHHHHHHHHHHcCCC-----------------cEEEeeeccccc-hHHHHHHHhhc
Confidence 9998422222233332 11111 257899999999 99999888764
No 256
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.77 E-value=5.6e-08 Score=107.93 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
+|+++|..++||||++++|. |.+ .|.+.. .-+...|. .+.+.. ... .+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt------g~~-----~dr~~e----E~~rGiTI-~l~~~~-~~~---------------~~ 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT------GVN-----ADRLPE----EKKRGMTI-DLGYAY-WPQ---------------PD 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-----Cccchh----cccCCceE-EeeeEE-Eec---------------CC
Confidence 68999999999999999998 532 222210 00111111 111100 000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~~~g~ 259 (495)
+..+.||||||.. .+... +...+..+|.+++|+|+..+... .+.+..... ..+...||+||+|.....
T Consensus 50 g~~i~~IDtPGhe----~fi~~---m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~-- 120 (614)
T PRK10512 50 GRVLGFIDVPGHE----KFLSN---MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA-- 120 (614)
T ss_pred CcEEEEEECCCHH----HHHHH---HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHH--
Confidence 4457899999962 23222 33334488999999999865322 222222222 234346899999986431
Q ss_pred hhHHHH-hcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 260 ALSAVA-ATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 260 ~ls~~~-~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.+.... ... +.+.... ...|.+++|+..|.| ++.|++.+.+...
T Consensus 121 ~~~~v~~ei~---------~~l~~~~~~~~~ii~VSA~tG~g-I~~L~~~L~~~~~ 166 (614)
T PRK10512 121 RIAEVRRQVK---------AVLREYGFAEAKLFVTAATEGRG-IDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHH---------HHHHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhc
Confidence 111111 000 0000000 124667899999999 9999999988654
No 257
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.76 E-value=4.1e-08 Score=90.32 Aligned_cols=153 Identities=15% Similarity=0.065 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++++. +.+.. . .+ ....++.+...... ...
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~------~~~~~---~-~~-----------~~~~~~~~~~~~~~-------------~~~ 51 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYV------TNKFD---T-QL-----------FHTIGVEFLNKDLE-------------VDG 51 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHH------cCCCC---c-Cc-----------CCceeeEEEEEEEE-------------ECC
Confidence 469999999999999999997 22110 0 00 00011111100000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc--------cCCceEEEEeC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ--------SVSVGAVIVTK 250 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~--------~~~~~~vIlTK 250 (495)
..+.+.|+||||..... .+ .......+|.+++|.|.+.... .......+.. .. +..+|.||
T Consensus 52 ~~~~l~i~D~~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK 123 (170)
T cd04116 52 HFVTLQIWDTAGQERFR-----SL--RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESF-PFVVLGNK 123 (170)
T ss_pred eEEEEEEEeCCChHHHH-----Hh--HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCC-cEEEEEEC
Confidence 24677899999963211 11 1123347899999988764321 1111121111 12 35899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
+|...+........ +...++. ..+...+|+..|.| +..+++.+.+.
T Consensus 124 ~Dl~~~~~~~~~~~-------------~~~~~~~-~~~~~e~Sa~~~~~-v~~~~~~~~~~ 169 (170)
T cd04116 124 NDIPERQVSTEEAQ-------------AWCRENG-DYPYFETSAKDATN-VAAAFEEAVRR 169 (170)
T ss_pred ccccccccCHHHHH-------------HHHHHCC-CCeEEEEECCCCCC-HHHHHHHHHhh
Confidence 99853321111110 0011111 12446789999999 99999887653
No 258
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.76 E-value=4e-08 Score=108.86 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HH-HHHhccCCceEEEEeCccCCCCc-c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QA-QAFKQSVSVGAVIVTKMDGHAKG-G 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~-~~f~~~~~~~~vIlTK~D~~~~~-g 258 (495)
.+.+.|+||||.... ..++.+ .+..+|.+++|+|++.+..... .. ......++ ..+|+||+|..... .
T Consensus 73 ~~~lnLiDTPGh~dF----~~~v~~---sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~~~ 144 (600)
T PRK05433 73 TYILNLIDTPGHVDF----SYEVSR---SLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAADPE 144 (600)
T ss_pred cEEEEEEECCCcHHH----HHHHHH---HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCcccHH
Confidence 578899999998532 222322 2336799999999987643322 11 22223344 58999999975321 1
Q ss_pred chhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. ..+. ......++|+..|.| +..|++.+.+.++.
T Consensus 145 ~v~~ei~~~lg~---------------~~~~vi~iSAktG~G-I~~Ll~~I~~~lp~ 185 (600)
T PRK05433 145 RVKQEIEDVIGI---------------DASDAVLVSAKTGIG-IEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHhCC---------------CcceEEEEecCCCCC-HHHHHHHHHHhCcc
Confidence 1111111 0111 011246799999999 99999999988863
No 259
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.76 E-value=6.3e-08 Score=88.28 Aligned_cols=106 Identities=13% Similarity=-0.017 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~~~~ 256 (495)
+.+.|.||||...... +.. .....+|.+++|.|.+.... .......+.. ...+..+|.||+|....
T Consensus 49 ~~l~i~Dt~G~~~~~~-~~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 49 SVLEILDTAGTEQFAS-MRD------LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred EEEEEEECCCcccccc-hHH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 4567899999643221 111 12237899999999875432 2222222221 11235889999997532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ +.+ ..+ ..|...+|+..|.| +..+++++.+.+
T Consensus 122 ~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEG-------------RALAEEW--GCPFMETSAKSKTM-VNELFAEIVRQM 162 (163)
T ss_pred CccCHHHH-------------HHHHHHh--CCEEEEecCCCCCC-HHHHHHHHHHhc
Confidence 11100000 111 111 12446789999999 999998887654
No 260
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=4.1e-08 Score=92.30 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=82.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++++ +.+... .|.+ +.+.......+... ..
T Consensus 2 ki~v~G~~~vGKSsli~~~~------~~~~~~----~~~~-------t~~~~~~~~~~~~~-----------------~~ 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT------EDEFSE----STKS-------TIGVDFKIKTVYIE-----------------NK 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-------ceeeEEEEEEEEEC-----------------CE
Confidence 48999999999999999998 433211 0000 00000000000100 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|+||||...... + ....+..+|.+++|+|++........ ...+. ....+..+|.||.|....
T Consensus 48 ~~~~~i~Dt~g~~~~~~-----~--~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 48 IIKLQIWDTNGQERFRS-----L--NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred EEEEEEEECCCcHHHHh-----h--HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 46778999999532111 1 12234488999999998754332221 11121 112346899999997532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...-.... +...... ..+...+|+..|.| +..+++.+.+.+
T Consensus 121 ~~v~~~~~-------------~~~~~~~-~~~~~evSa~~~~~-i~~~f~~l~~~~ 161 (188)
T cd04125 121 KVVDSNIA-------------KSFCDSL-NIPFFETSAKQSIN-VEEAFILLVKLI 161 (188)
T ss_pred ccCCHHHH-------------HHHHHHc-CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11000000 0000000 11446789999999 988888876654
No 261
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.75 E-value=4.9e-08 Score=90.49 Aligned_cols=157 Identities=12% Similarity=0.069 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++++. +.+.. .+.|.|.. .....+.... .. .
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~------~~~f~---~~~~~~T~-------~~~~~~~~~~-~~----------------~ 51 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFL------GRSFS---LNAYSPTI-------KPRYAVNTVE-VY----------------G 51 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHh------CCCCC---cccCCCcc-------CcceEEEEEE-EC----------------C
Confidence 458999999999999999998 43321 11222210 0000000000 00 0
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc-cCCceEEEEeCccCCCCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ-SVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~-~~~~~~vIlTK~D~~~~~ 257 (495)
....+.+.||+|...... +. ......+|.+++|+|++....... ....+.. .-.+..+|.||+|.....
T Consensus 52 ~~~~l~~~d~~g~~~~~~-----~~--~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 52 QEKYLILREVGEDEVAIL-----LN--DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred eEEEEEEEecCCcccccc-----cc--hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccc
Confidence 134567889998643211 11 111238899999999975433222 1222211 123469999999984321
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
....... +.+.....+.+...+|+..|.| +..+++.+.+.+
T Consensus 125 ~~~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~~ 165 (169)
T cd01892 125 QRYEVQP-------------DEFCRKLGLPPPLHFSSKLGDS-SNELFTKLATAA 165 (169)
T ss_pred cccccCH-------------HHHHHHcCCCCCEEEEeccCcc-HHHHHHHHHHHh
Confidence 1000000 1111111112235789999998 999999887654
No 262
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=5.9e-08 Score=107.31 Aligned_cols=175 Identities=21% Similarity=0.231 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---HcCC-ceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~---~~G~-kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l 176 (495)
-+.|+|+|..++|||||+.+|..... +.+. +-.+.+.+ ......++.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~-----------~~E~erGiTi~~~~~------------ 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSN-----------DLEKERGITILAKNT------------ 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccc-----------cccccCceEEEEEEE------------
Confidence 35799999999999999999984211 1110 00111111 111112222221111
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHH-HHhccCCceEEEEeCccC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQ-AFKQSVSVGAVIVTKMDG 253 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~-~f~~~~~~~~vIlTK~D~ 253 (495)
.+...++.+.|+||||..... .+.. ..+..+|.+++|+|+..+.... ..+. .....+++ .+++||+|.
T Consensus 62 -~i~~~~~~inliDTPG~~df~----~~v~---~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~ 132 (607)
T PRK10218 62 -AIKWNDYRINIVDTPGHADFG----GEVE---RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDR 132 (607)
T ss_pred -EEecCCEEEEEEECCCcchhH----HHHH---HHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 001246889999999975332 2222 2334789999999998764321 1222 22233454 899999997
Q ss_pred CC-CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCC---------CcHHHHHHHHHhCCC
Q 011010 254 HA-KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG---------DWSGFMDKIHEVVPM 314 (495)
Q Consensus 254 ~~-~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~G---------di~~L~e~i~~~~~~ 314 (495)
.. +....+..+... |...+. .++ ....|..++|+..|.+ ++..|++.+.+.+|.
T Consensus 133 ~~a~~~~vl~ei~~l-----~~~l~~-~~~-~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 133 PGARPDWVVDQVFDL-----FVNLDA-TDE-QLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCchhHHHHHHHHH-----HhccCc-ccc-ccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 42 222222222111 000000 000 0124567778888763 388999999998863
No 263
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.75 E-value=4.4e-08 Score=90.49 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.+.||||...... +. ......+|.+++|+|.+........ ...+. ...+ ..+|.||+|...+
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~ 119 (166)
T cd00877 48 KIRFNVWDTAGQEKFGG-----LR--DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDR 119 (166)
T ss_pred EEEEEEEECCCChhhcc-----cc--HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcccc
Confidence 46789999999743211 11 1122378999999999854332221 12222 1244 4899999998522
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.-. ... ..... ....+...+|+..|.| ++.+++++.+.+
T Consensus 120 ~~~--~~~-------------~~~~~-~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 158 (166)
T cd00877 120 KVK--AKQ-------------ITFHR-KKNLQYYEISAKSNYN-FEKPFLWLARKL 158 (166)
T ss_pred cCC--HHH-------------HHHHH-HcCCEEEEEeCCCCCC-hHHHHHHHHHHH
Confidence 110 000 00000 1112345689999999 999999987654
No 264
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.74 E-value=8.9e-08 Score=104.49 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec---cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~---D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
.+.|+|+|.+|+|||||+.+|..+... -.+..-|.. +.+....+. +.....++.+.....
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~-i~~~g~v~~~~~~~~~~~D~~---~~E~~rgiSi~~~~~------------- 72 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGA-IQEAGTVKGRKSGRHATSDWM---EMEKQRGISVTSSVM------------- 72 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCC-ccccceeeccccCccccCCCc---HHHHhhCCceeeeeE-------------
Confidence 457999999999999999999854221 011222221 111100000 111111222211100
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
.+...++.+.|+||||... +..+. ..++..+|.+++|+|++.+.... ........ .+| ..+++||+|..
T Consensus 73 ~~~~~~~~inliDTPG~~d----f~~~~---~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~ 144 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHED----FSEDT---YRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRD 144 (526)
T ss_pred EEEECCEEEEEEECCCchh----hHHHH---HHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCccc
Confidence 1112467899999999742 22222 22333679999999998764332 12222222 244 58999999975
Q ss_pred C
Q 011010 255 A 255 (495)
Q Consensus 255 ~ 255 (495)
.
T Consensus 145 ~ 145 (526)
T PRK00741 145 G 145 (526)
T ss_pred c
Confidence 4
No 265
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.73 E-value=1e-07 Score=93.03 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=65.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
..++.+|+++|++|+||||+++.|...+.. ..+.. .. . .+.+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~-----~~~~~-----------~~-g---~i~i~~---------------- 79 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTK-----QNISD-----------IK-G---PITVVT---------------- 79 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhccc-----Ccccc-----------cc-c---cEEEEe----------------
Confidence 345778999999999999999999843211 01110 00 0 011111
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhcc-CCceEEEEeCccCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQS-VSVGAVIVTKMDGH 254 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~-~~~~~vIlTK~D~~ 254 (495)
..+..+.++||||.. .. +.+.+..+|.+++|+|++.+.... .....+... .+...+|+||+|..
T Consensus 80 ---~~~~~i~~vDtPg~~-------~~---~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 ---GKKRRLTFIECPNDI-------NA---MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ---cCCceEEEEeCCchH-------HH---HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 125678999999843 11 222334789999999998654332 233333322 34335599999986
Q ss_pred C
Q 011010 255 A 255 (495)
Q Consensus 255 ~ 255 (495)
.
T Consensus 147 ~ 147 (225)
T cd01882 147 K 147 (225)
T ss_pred C
Confidence 3
No 266
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.73 E-value=8.3e-08 Score=89.80 Aligned_cols=153 Identities=19% Similarity=0.104 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|++||||||++++|. ..+..-+.+ +. +..+....
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~------~~~~~~~~p--------------T~--g~~~~~i~---------------- 54 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLK------NGEISETIP--------------TI--GFNIEEIK---------------- 54 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHH------SSSEEEEEE--------------ES--SEEEEEEE----------------
T ss_pred cEEEEEEECCCccchHHHHHHhh------hccccccCc--------------cc--ccccceee----------------
Confidence 45679999999999999999997 433221111 11 11111100
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D 252 (495)
..++.+.+.|.+|.......+ ......+|.++||+|++.... +......+.. ...+..+++||.|
T Consensus 55 -~~~~~~~~~d~gG~~~~~~~w-------~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 55 -YKGYSLTIWDLGGQESFRPLW-------KSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp -ETTEEEEEEEESSSGGGGGGG-------GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred -eCcEEEEEEeccccccccccc-------eeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc
Confidence 136788999999974322111 122237799999999985432 2222222222 1234578899999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCccccc--ccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~--~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
...... ...+.... .++.+. ........|+..|.| +.+.++++.+.
T Consensus 127 ~~~~~~-~~~i~~~l-----------~l~~l~~~~~~~v~~~sa~~g~G-v~e~l~WL~~~ 174 (175)
T PF00025_consen 127 LPDAMS-EEEIKEYL-----------GLEKLKNKRPWSVFSCSAKTGEG-VDEGLEWLIEQ 174 (175)
T ss_dssp STTSST-HHHHHHHT-----------TGGGTTSSSCEEEEEEBTTTTBT-HHHHHHHHHHH
T ss_pred ccCcch-hhHHHhhh-----------hhhhcccCCceEEEeeeccCCcC-HHHHHHHHHhc
Confidence 753211 11111111 122232 112234579999999 99999998764
No 267
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.73 E-value=5.8e-08 Score=93.68 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||+++.+. +.+.... +.+ ..++.++....... ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~------~~~~~~~----~~~-----------ti~~d~~~~~i~~~------------~~ 49 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFT------EGRFAEV----SDP-----------TVGVDFFSRLIEIE------------PG 49 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCC----CCc-----------eeceEEEEEEEEEC------------CC
Confidence 359999999999999999998 3322111 111 01111111000000 00
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||..... .+ .......+|.+++|.|.+......+ ....+.+ ...+..+|.||.|..
T Consensus 50 ~~~~l~i~Dt~G~~~~~-----~~--~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 50 VRIKLQLWDTAGQERFR-----SI--TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred CEEEEEEEeCCcchhHH-----HH--HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 13568899999963221 11 1123347899999999875432222 2222211 123457888999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+ ..+. .+...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~v~~~~~-------------~~~~~~~~--~~~~e~Sak~g~~-v~e~f~~l~~~~ 165 (211)
T cd04111 123 SQRQVTREEA-------------EKLAKDLG--MKYIETSARTGDN-VEEAFELLTQEI 165 (211)
T ss_pred cccccCHHHH-------------HHHHHHhC--CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4211111110 111 1111 2345689999999 999998886543
No 268
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.73 E-value=1.1e-07 Score=92.72 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=42.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHH-hccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAF-KQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f-~~~~~~~~vIlTK~D~~ 254 (495)
++.+.|+||||...... + ...++..+|.+++|+|+..+.... ...+.. ....+ ..+|+||+|..
T Consensus 72 ~~~i~iiDTPG~~~f~~----~---~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSS----E---VTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHH----H---HHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcc
Confidence 67889999999864322 2 223334789999999998764322 222322 23344 58999999975
No 269
>PTZ00369 Ras-like protein; Provisional
Probab=98.72 E-value=7.8e-08 Score=90.72 Aligned_cols=153 Identities=14% Similarity=0.091 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||++++++ +.+. .+.|.+...+.. +..+ .. . .
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~------~~~~----~~~~~~t~~~~~-----~~~~--~~--~----------------~ 50 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFI------QNHF----IDEYDPTIEDSY-----RKQC--VI--D----------------E 50 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCC----CcCcCCchhhEE-----EEEE--EE--C----------------C
Confidence 358999999999999999998 3221 011111100000 0000 00 0 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc-----cCCceEEEEeCccC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ-----SVSVGAVIVTKMDG 253 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~-----~~~~~~vIlTK~D~ 253 (495)
..+.+.|+||||...... +.. .....+|.+++|+|++.... .......+.. .. +..+|.||+|.
T Consensus 51 ~~~~l~i~Dt~G~~~~~~-l~~------~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~-piiiv~nK~Dl 122 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSA-MRD------QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRV-PMILVGNKCDL 122 (189)
T ss_pred EEEEEEEEeCCCCccchh-hHH------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEECccc
Confidence 235577899999753221 111 12337899999999875432 1111222211 22 35889999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ +....+. .|...+|+..|.| +..+++++.+.+
T Consensus 123 ~~~~~i~~~~~~------------~~~~~~~--~~~~e~Sak~~~g-i~~~~~~l~~~l 166 (189)
T PTZ00369 123 DSERQVSTGEGQ------------ELAKSFG--IPFLETSAKQRVN-VDEAFYELVREI 166 (189)
T ss_pred ccccccCHHHHH------------HHHHHhC--CEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 432100000000 0001111 2456789999999 999888887655
No 270
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.71 E-value=9.1e-08 Score=93.01 Aligned_cols=106 Identities=8% Similarity=-0.041 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhc-CCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATV-NPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~-~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
.+.+.|+||||.. . . +... ... .+|.+++|+|++...... .....+.. .-.+..+|.||+|..
T Consensus 49 ~~~l~i~Dt~G~~---~-~---~~~~--~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 49 ESTLVVIDHWEQE---M-W---TEDS--CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEEEEEeCCCcc---h-H---HHhH--HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 5678999999985 1 1 1111 122 689999999998543221 12222221 112459999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+..-. ..+...+|+..|.| ++.+++.+...+
T Consensus 120 ~~~~v~~~~~-------------~~~a~~~-~~~~~e~SA~~~~g-v~~l~~~l~~~~ 162 (221)
T cd04148 120 RSREVSVQEG-------------RACAVVF-DCKFIETSAGLQHN-VDELLEGIVRQI 162 (221)
T ss_pred ccceecHHHH-------------HHHHHHc-CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 3321100000 0110000 11335689999999 999999887765
No 271
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.71 E-value=1.9e-07 Score=98.16 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
.+++++||-||||||++.+++. ...|-+ . + .+++|+.- |. .++.
T Consensus 168 trTlllcG~PNVGKSSf~~~vt------radvev-q--p---------YaFTTksL---~v---------------GH~d 211 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVT------RADDEV-Q--P---------YAFTTKLL---LV---------------GHLD 211 (620)
T ss_pred cCeEEEecCCCCCcHhhccccc------cccccc-C--C---------cccccchh---hh---------------hhhh
Confidence 4679999999999999999998 222221 1 1 22333221 11 0111
Q ss_pred hcCCcEEEEeCCCCCcch--HHHHHHHHHHHHHhcCCCEEEEEeeCC--ccccHHHHHHHHhcc-----CCceEEEEeCc
Q 011010 181 KENCDLIIVDTSGRHKQE--AALFEEMRQVSEATVNPDLVIFVMDSS--IGQAAFDQAQAFKQS-----VSVGAVIVTKM 251 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~--~~l~~el~~i~~~i~~~d~vllVvDa~--~g~~~~~~~~~f~~~-----~~~~~vIlTK~ 251 (495)
..--.+.+|||||++... +.-.-||..+....+-...|+|++|-+ .|....+++..|+.. ..+.++|+||+
T Consensus 212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence 123357899999985433 223334554444443455689999976 577777888888763 24689999999
Q ss_pred cCCCCc------cchhHHHHhcC-CCeEEec
Q 011010 252 DGHAKG------GGALSAVAATK-SPVIFIG 275 (495)
Q Consensus 252 D~~~~~------g~~ls~~~~~~-~PI~fi~ 275 (495)
|..... ...++.+..-+ .||.-.+
T Consensus 292 D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 292 DAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred cccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 975432 23344444333 5555554
No 272
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.71 E-value=1e-07 Score=87.73 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=57.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh----c-cCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK----Q-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~----~-~~~~~~vIlTK~D~~ 254 (495)
.+.+.++||||..... .+.+ .....++.+++|+|.+..... ......+. . ..| ..+|.||+|..
T Consensus 48 ~~~~~i~Dt~G~~~~~-~~~~------~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~ 119 (168)
T cd04177 48 QCDLEILDTAGTEQFT-AMRE------LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLE 119 (168)
T ss_pred EEEEEEEeCCCcccch-hhhH------HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhcc
Confidence 3567899999964322 1111 112267889999998753321 11112111 1 234 47899999975
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
........... .+..-....|...+|+..|.| +..+++++...
T Consensus 120 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~SA~~~~~-i~~~f~~i~~~ 162 (168)
T cd04177 120 DDRQVSREDGV-------------SLSQQWGNVPFYETSARKRTN-VDEVFIDLVRQ 162 (168)
T ss_pred ccCccCHHHHH-------------HHHHHcCCceEEEeeCCCCCC-HHHHHHHHHHH
Confidence 33211000000 000000113456789999999 99999888654
No 273
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.71 E-value=9e-08 Score=97.68 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+++.|.|..||||||+++.+|.+++++|++|++||.||.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 478999999999999999999999999999999999984
No 274
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.71 E-value=9.3e-08 Score=98.05 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=25.4
Q ss_pred cCccchhhhccCCCCcHHHHH-HHHHhCCCCC
Q 011010 286 FDVKPFVSRLLGMGDWSGFMD-KIHEVVPMDQ 316 (495)
Q Consensus 286 f~p~~~vS~l~G~Gdi~~L~e-~i~~~~~~~~ 316 (495)
+.+..++|+..+.+ +..|.+ .+.+++|+..
T Consensus 242 ~~~iI~iSA~~e~~-L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 242 DEIVVPTSAEAELA-LRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCeEEEEeCccccc-HHHHHHhhHHHhCCCCC
Confidence 55678899999999 999998 6999998664
No 275
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.71 E-value=3.3e-08 Score=93.18 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=81.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|.+||||||+++++. +.+.. .+.|.+ ..+..++..... ....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~------~~~~~---~~~~~~-----------t~~~~~~~~~~~-------------~~~~ 48 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYV------HHRFL---VGPYQN-----------TIGAAFVAKRMV-------------VGER 48 (193)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCcC---CcCccc-----------ceeeEEEEEEEE-------------ECCE
Confidence 48999999999999999998 32211 011111 001111100000 0011
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc--CCceEEEEeCccCCCCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~--~~~~~vIlTK~D~~~~~ 257 (495)
.+.+.|+||||..... .+. ......+|.+++|+|.+...... .....+... ..+..+|.||+|.....
T Consensus 49 ~~~l~i~D~~G~~~~~-----~~~--~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 121 (193)
T cd04118 49 VVTLGIWDTAGSERYE-----AMS--RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121 (193)
T ss_pred EEEEEEEECCCchhhh-----hhh--HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccc
Confidence 3456789999964321 111 12233789999999987532211 122222221 12358999999974321
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccc-c-ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEF-E-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l-~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ +.+..+ . ...+...+|+..|.| ++.|++.+.+.+
T Consensus 122 ~~~~~v~~------------~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 165 (193)
T cd04118 122 RSLRQVDF------------HDVQDFADEIKAQHFETSSKTGQN-VDELFQKVAEDF 165 (193)
T ss_pred cccCccCH------------HHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 10000000 000011 0 012345789999999 999999887654
No 276
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.70 E-value=3.2e-08 Score=92.66 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=60.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHH---hccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAF---KQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f---~~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+.. .....+|.+++|+|.+......+. ...+ ....| ..+|.||.|...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~--~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 119 (187)
T cd04132 48 IIELALWDTAGQEEYD-----RLRP--LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRK 119 (187)
T ss_pred EEEEEEEECCCchhHH-----HHHH--HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhh
Confidence 4578899999963211 1211 233488999999998753322111 1111 22344 489999999853
Q ss_pred Cccc--hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~--~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ...... .+.+.......+...+|+..|.| +..+++.+.+.+
T Consensus 120 ~~~~~~~v~~~~-----------~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 166 (187)
T cd04132 120 DKNLDRKVTPAQ-----------AESVAKKQGAFAYLECSAKTMEN-VEEVFDTAIEEA 166 (187)
T ss_pred CccccCCcCHHH-----------HHHHHHHcCCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 2100 000000 01110001111446789999999 999999887765
No 277
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.70 E-value=1.7e-07 Score=99.40 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=65.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhc-cCCceEEEEeCccCCCCcc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g 258 (495)
+..+.|+||||.. .+... +......+|.+++|+|++.+. ...+.+..+.. ..+...+++||+|......
T Consensus 79 ~~~i~liDtPGh~----~f~~~---~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~ 151 (406)
T TIGR03680 79 LRRVSFVDAPGHE----TLMAT---MLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEK 151 (406)
T ss_pred ccEEEEEECCCHH----HHHHH---HHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHH
Confidence 4568999999962 23332 233333789999999998542 12222222222 1333578899999864321
Q ss_pred c--hhHHHHhcCCCeEEeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 G--ALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~--~ls~~~~~~~PI~fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
. .+..+. +.+.. .....|..++|+..|.| ++.|++.+...++
T Consensus 152 ~~~~~~~i~------------~~l~~~~~~~~~ii~vSA~~g~g-i~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIK------------EFVKGTVAENAPIIPVSALHNAN-IDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHH------------hhhhhcccCCCeEEEEECCCCCC-hHHHHHHHHHhCC
Confidence 1 011111 00000 01123567899999999 9999999998765
No 278
>PRK12739 elongation factor G; Reviewed
Probab=98.70 E-value=1.6e-07 Score=105.93 Aligned_cols=129 Identities=25% Similarity=0.235 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
.+.|+|+|.+|+|||||+++|+.+.... .++..|+.. ....|.+.. ....++...... ..+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~---~~~~D~~~~-E~~rgiti~~~~-------------~~~~ 69 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDG---AATMDWMEQ-EQERGITITSAA-------------TTCF 69 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCC---ccccCCChh-HhhcCCCcccee-------------EEEE
Confidence 4679999999999999999998543221 111112110 000010100 001111110000 0112
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
..++.+.||||||.+. +..+ +..++..+|.+++|+|+..+.... ..+..... ..+ ..+++||+|...
T Consensus 70 ~~~~~i~liDTPG~~~----f~~e---~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~ 139 (691)
T PRK12739 70 WKGHRINIIDTPGHVD----FTIE---VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIG 139 (691)
T ss_pred ECCEEEEEEcCCCHHH----HHHH---HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 3478899999999742 2222 334444679999999998764432 23333322 344 489999999864
No 279
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.70 E-value=1.9e-07 Score=76.89 Aligned_cols=70 Identities=31% Similarity=0.354 Sum_probs=55.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
++++.|.+|+||||++..|+.+|++.|++|++++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 3788899999999999999999999999999887
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
|++++|+++.......+ .......+|.+++|+++..
T Consensus 35 --d~iivD~~~~~~~~~~~------~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL------CLLALLAADLVIIVTTPEA 70 (99)
T ss_pred --CEEEEeCCCCccchhhh------hhhhhhhCCEEEEecCCch
Confidence 77999999876443211 1122237899999999874
No 280
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.70 E-value=1.1e-07 Score=104.08 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+|+|++|||||||+|.|. |.++..++. +++ .+++. ..++..
T Consensus 118 slrIvLVGKTGVGKSSLINSIL------Gekvf~vss--~~~--------~TTr~-~ei~~~------------------ 162 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIF------GEVKFSTDA--FGM--------GTTSV-QEIEGL------------------ 162 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------ccccccccC--CCC--------CceEE-EEEEEE------------------
Confidence 3579999999999999999999 888776654 222 23321 111111
Q ss_pred hcCCcEEEEeCCCCCcch--HHHHHH-HHHHHHHhc--CCCEEEEEeeCCc-cc--cHHHHHHHHh----cc-CCceEEE
Q 011010 181 KENCDLIIVDTSGRHKQE--AALFEE-MRQVSEATV--NPDLVIFVMDSSI-GQ--AAFDQAQAFK----QS-VSVGAVI 247 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~--~~l~~e-l~~i~~~i~--~~d~vllVvDa~~-g~--~~~~~~~~f~----~~-~~~~~vI 247 (495)
..+..+.||||||+.... ....++ +..+...+. .+|.+|||..... .. +....++.+. +. ..-++||
T Consensus 163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV 242 (763)
T TIGR00993 163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT 242 (763)
T ss_pred ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence 125789999999987542 112222 233333332 5888888876432 22 2222333332 22 2447999
Q ss_pred EeCccCCCC
Q 011010 248 VTKMDGHAK 256 (495)
Q Consensus 248 lTK~D~~~~ 256 (495)
+|+.|....
T Consensus 243 FThgD~lpp 251 (763)
T TIGR00993 243 LTHAASAPP 251 (763)
T ss_pred EeCCccCCC
Confidence 999998753
No 281
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.69 E-value=7e-08 Score=103.46 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=41.1
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHhc-cCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~~-~~~~~~vIlTK 250 (495)
..++.+.||||||.. ++..++ ...+..+|.+++|||+..|. ...+.+..... .++..++++||
T Consensus 82 ~~~~~i~lIDtPGh~----~f~~~~---~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHR----DFIKNM---ITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChH----HHHHHH---HHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 347889999999953 333333 33334789999999998752 12222222221 23434689999
Q ss_pred ccC
Q 011010 251 MDG 253 (495)
Q Consensus 251 ~D~ 253 (495)
+|.
T Consensus 155 mD~ 157 (446)
T PTZ00141 155 MDD 157 (446)
T ss_pred ccc
Confidence 994
No 282
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.69 E-value=4.2e-08 Score=90.90 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc--cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~--~~~~~~vIlTK~D~~~~ 256 (495)
...+.|+||||...... +.. .....+|.+++|.|.+....... ....+.. ...+..+|.||+|....
T Consensus 47 ~~~~~i~Dt~G~~~~~~-----~~~--~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 47 PVRLQLCDTAGQDEFDK-----LRP--LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred EEEEEEEECCCChhhcc-----ccc--cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 35678999999732211 111 13348899999999875322111 1222222 11345899999998654
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 309 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~ 309 (495)
.+...........++.. ..++.+..-....+...+|++.|.| ++.+++.+.
T Consensus 120 ~~~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~lf~~~~ 170 (173)
T cd04130 120 VNVLIQLARYGEKPVSQ-SRAKALAEKIGACEYIECSALTQKN-LKEVFDTAI 170 (173)
T ss_pred hhHHHHHhhcCCCCcCH-HHHHHHHHHhCCCeEEEEeCCCCCC-HHHHHHHHH
Confidence 33222222111111110 0001111111122446789999999 999998764
No 283
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.69 E-value=9.2e-08 Score=88.36 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.+.. .+. .+.+.+ ..+++++..... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~------~~~----~~~~~~-----------t~~~~~~~~~~~-------------~~~ 48 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA------GRF----PERTEA-----------TIGVDFRERTVE-------------IDG 48 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCC----CCcccc-----------ceeEEEEEEEEE-------------ECC
Confidence 3699999999999999999972 110 000111 011111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||...... .+ .......+|.+++|+|++....... ....+.. .-.+..+|.||+|..
T Consensus 49 ~~~~~~i~Dt~G~~~~~~----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 49 ERIKVQLWDTAGQERFRK----SM--VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred eEEEEEEEeCCChHHHHH----hh--HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 246789999999632111 11 1122347899999999975432211 1111111 112359999999975
Q ss_pred C
Q 011010 255 A 255 (495)
Q Consensus 255 ~ 255 (495)
.
T Consensus 123 ~ 123 (170)
T cd04115 123 E 123 (170)
T ss_pred h
Confidence 3
No 284
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.68 E-value=5.6e-08 Score=103.63 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=40.4
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc---cc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG---QA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g---~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.++.+.|+||||.. .+... +...+..+|.+++|+|++.+ .. .......... ..+...+|+||+|...
T Consensus 83 ~~~~i~iiDtpGh~----~f~~~---~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 DKYEVTIVDCPGHR----DFIKN---MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CCeEEEEEECCCHH----HHHHH---HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 46789999999942 22222 23333478999999999876 21 1111111111 1234578999999853
No 285
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.68 E-value=1.6e-07 Score=102.50 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC-CcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~-~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+.|+|+|.+|+|||||+.+|..+...- .+..-|..+. .+....|. .+.....++.+..... .+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~-~~~E~~rgisi~~~~~-------------~~ 75 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDW-MEMEKQRGISITTSVM-------------QF 75 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCC-CHHHHhcCCcEEEEEE-------------EE
Confidence 4579999999999999999997542110 1111222110 00000111 1111112332221100 01
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
...++.+.|+||||.. ++..+ ...++..+|.+++|+|++.+.... ...+.......+..+++||+|...
T Consensus 76 ~~~~~~inliDTPG~~----df~~~---~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 76 PYRDCLVNLLDTPGHE----DFSED---TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred eeCCeEEEEEECCChh----hHHHH---HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 1247889999999973 22222 233334789999999998764322 222222222234689999999853
No 286
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.68 E-value=2.4e-07 Score=97.81 Aligned_cols=49 Identities=8% Similarity=0.122 Sum_probs=33.6
Q ss_pred cCccchhhhccCCCCcHH-HHHHHHHhCC-------CCCchHHhhccccchhcHHHHHHHH
Q 011010 286 FDVKPFVSRLLGMGDWSG-FMDKIHEVVP-------MDQQPELLQKLSEGNFTLRIMYEQF 338 (495)
Q Consensus 286 f~p~~~vS~l~G~Gdi~~-L~e~i~~~~~-------~~~~~~~~~~~~~~~f~~~d~~~ql 338 (495)
+.+..++|+..+.+ +.. |.+.+.+++| .+..++..+| ..|+.+ .+++.+
T Consensus 244 ~~~vvpISA~~e~~-l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~ 300 (396)
T PRK09602 244 YYIVVPTSAEAELA-LRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKY 300 (396)
T ss_pred CCcEEEEcchhhhh-HHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHh
Confidence 45567899999998 888 8888888765 3345555555 455655 555554
No 287
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.68 E-value=1.5e-07 Score=92.85 Aligned_cols=187 Identities=18% Similarity=0.198 Sum_probs=104.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
..|-.|+++|.+|+|||+|||+|- +.....|..|..++- + .++. .
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF---~~~~~~v~~vg~~t~-~---------~~~~----------------------~ 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALF---QGEVKEVSKVGVGTD-I---------TTRL----------------------R 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHH---hccCceeeecccCCC-c---------hhhH----------------------H
Confidence 345567799999999999999997 222344443332110 0 0000 0
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHh-ccC-CceEEEEeCccCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFK-QSV-SVGAVIVTKMDGH 254 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~-~~~-~~~~vIlTK~D~~ 254 (495)
...++.-++|.||||.....+.--+.-+.+.+.+.+.|.+++++|+... +.+.+..+... ... ....+++|.+|..
T Consensus 82 ~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 82 LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred hhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 0012456899999999653322111123344555577999999998632 12222222111 112 4468999999986
Q ss_pred CCccchhHHHHhcCCCeEEec--cCCCcc----cccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHhhcc
Q 011010 255 AKGGGALSAVAATKSPVIFIG--TGEHMD----EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKL 324 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~--~Ge~i~----~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~ 324 (495)
.++ .++-..-+.|..-+- +-++.+ -+.+-.|..+++..++.| ++.|+..+-..+|.+...-.+.++
T Consensus 162 ~p~---~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg-l~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 162 EPG---REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG-LKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred ccc---cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc-HHHHHHHHHHhCcccccchhhhhh
Confidence 553 001111111110000 002221 134567888888889999 999999999999866444455554
No 288
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.67 E-value=1.2e-07 Score=86.79 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=57.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---H---HHHHHhc---cCCceEEEEeCccC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---D---QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~---~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
.+.+.|+||||........ ....+..+|.+++|+|++...... . ....... ..| ..+|.||+|.
T Consensus 46 ~~~~~i~D~~g~~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQ------LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccch------HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 3467899999975311111 111233789999999998543211 1 1122221 233 5899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCC-CCcHHHHHHHHHh
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~-Gdi~~L~e~i~~~ 311 (495)
........... +.+ ..+. .+...+|+..|. | +..+++.+.+.
T Consensus 119 ~~~~~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~~-v~~~f~~l~~~ 162 (165)
T cd04146 119 LHYRQVSTEEG-------------EKLASELG--CLFFEVSAAEDYDG-VHSVFHELCRE 162 (165)
T ss_pred HHhCccCHHHH-------------HHHHHHcC--CEEEEeCCCCCchh-HHHHHHHHHHH
Confidence 43211000000 011 1111 234568889885 6 99999888654
No 289
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.67 E-value=3.8e-07 Score=91.00 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=81.3
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHH-HHHcCCceEEEeccCCcch-------------hHHHHHhhhh---------hcC
Q 011010 101 PSVIMFV-GLQGSGKTTTCTKYAYY-HQKKGWKPALVCADTFRAG-------------AFDQLKQNAT---------KAK 156 (495)
Q Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLa~~-l~~~G~kVaIVs~D~~R~~-------------a~dqL~~~a~---------~~~ 156 (495)
+++|+++ |.-|+||||++++|+.+ ++..|++|+++++|+..+. -.+-|...+. ..+
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 4578887 99999999999999544 4556788899999985432 1222322211 134
Q ss_pred cceeccCCCCC-h----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--cc
Q 011010 157 IPFYGSYTESD-P----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QA 229 (495)
Q Consensus 157 i~~~~~~~~~d-p----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~ 229 (495)
+.+.+...... . .+.....+..+. +.+||+|||||+-...+. +.... .+|.+++|..+... .+
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~-~sd~~viVt~pe~~si~~ 151 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFIL-SSDELVIVTTPEPTSITD 151 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHH-hcCcEEEEeCCCcchHHH
Confidence 43333222111 1 111223334443 456999999966443321 12222 56888888887532 23
Q ss_pred HHHHHHHHhc-cCCceE--EEEeCccCCC
Q 011010 230 AFDQAQAFKQ-SVSVGA--VIVTKMDGHA 255 (495)
Q Consensus 230 ~~~~~~~f~~-~~~~~~--vIlTK~D~~~ 255 (495)
+....+.... ..+..+ +|+|+++...
T Consensus 152 A~~~i~~~~~~~~~~~~~~vV~N~v~~~~ 180 (262)
T COG0455 152 AYKTIKILSKLGLDLLGRRVVLNRVRSTK 180 (262)
T ss_pred HHHHHHHHHHcCCccccceEEEEeccccc
Confidence 4333333222 233334 9999998543
No 290
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.66 E-value=2.9e-07 Score=84.89 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=61.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+++|.+||||||+++++. +.+.. ..|.|. .+..+... ...+
T Consensus 2 i~ivG~~~vGKTsli~~~~------~~~~~----~~~~pt-----------~g~~~~~i-----------------~~~~ 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS------SERSL----ESVVPT-----------TGFNSVAI-----------------PTQD 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCCc----cccccc-----------CCcceEEE-----------------eeCC
Confidence 7899999999999999998 33210 111110 01111110 0125
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc--cCCceEEEEeCccCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ--SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~--~~~~~~vIlTK~D~~~ 255 (495)
+.+.|+||||...... + ....+..+|.+++|+|++.... .......+.. .-.+..+|.||+|...
T Consensus 44 ~~l~i~Dt~G~~~~~~-----~--~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRK-----Y--WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhH-----H--HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 6789999999753221 1 1123347899999999875432 1112222321 1223589999999753
No 291
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.66 E-value=6.1e-08 Score=99.36 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=87.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH-HH-HHhhhhh-----cCcceeccCCCCChHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-DQ-LKQNATK-----AKIPFYGSYTESDPVRIAVEG 175 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~-dq-L~~~a~~-----~~i~~~~~~~~~dp~~ia~~~ 175 (495)
+.+|.|.=||||||++++|..... |+|++|+=.+.--.+-- .. +...... .|+ .++--..+.+....+.
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGC--ICCT~r~dl~~~~~~L 78 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGC--ICCTVRDDLLPALERL 78 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCce--EEEeccchhHHHHHHH
Confidence 678899999999999999996655 89999987754222211 01 1111111 111 1111122444444333
Q ss_pred HHHHhhcCCcEEEEeCCCCCcchHHHHHHHH--HHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccC-CceEEEEeCc
Q 011010 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMR--QVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSV-SVGAVIVTKM 251 (495)
Q Consensus 176 l~~~~~~~~dvviIDTaG~~~~~~~l~~el~--~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~-~~~~vIlTK~ 251 (495)
.. .++++|+++|.|.|...+......... .+...+ .-|.++-||||........ ....+.+.+ --..+|+||+
T Consensus 79 ~~--~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~-~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~ 155 (323)
T COG0523 79 LR--RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGV-RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKT 155 (323)
T ss_pred Hh--ccCCCCEEEEeCCCCCCCHHHHHHhccccccccce-eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecc
Confidence 33 355799999999999776433322221 222333 5677999999986544333 333343332 2368999999
Q ss_pred cCCCCc
Q 011010 252 DGHAKG 257 (495)
Q Consensus 252 D~~~~~ 257 (495)
|.....
T Consensus 156 Dlv~~~ 161 (323)
T COG0523 156 DLVDAE 161 (323)
T ss_pred cCCCHH
Confidence 997664
No 292
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.65 E-value=2.2e-07 Score=84.60 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=70.2
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH------------HHHHhh---------------hh
Q 011010 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLKQN---------------AT 153 (495)
Q Consensus 102 ~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~------------dqL~~~---------------a~ 153 (495)
++|+|+|+ +|+||||++..||..+++.|++|++|+.|.+.+... +-+... ..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 47999995 599999999999999999999999999998655221 111111 11
Q ss_pred ---hcCcceeccCCCCChHH-----HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 154 ---KAKIPFYGSYTESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 154 ---~~~i~~~~~~~~~dp~~-----ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
..++.+.......++.. .....+..++ +.||+||||+|+....... ...+..+|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~--------~~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT--------QAVLELADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH--------HHHHTTHSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH--------HHHHHHCCEEEEEECCC
Confidence 12333333222222222 2334444444 3899999999987654421 11334779999999875
No 293
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.64 E-value=1.6e-07 Score=89.79 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=89.4
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC-c----------------------chhHHH-HHhhhhhcCc
Q 011010 103 VIMF-VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-R----------------------AGAFDQ-LKQNATKAKI 157 (495)
Q Consensus 103 vI~i-vG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~-R----------------------~~a~dq-L~~~a~~~~i 157 (495)
+|++ .|..||||||+.++|+..|++.|+||++|+.|.- | -+...| |..--.-.+.
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL 83 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENL 83 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCce
Confidence 3444 4999999999999999999999999999999971 1 011122 1111111122
Q ss_pred ceeccCCCCCh----HHHHHHHHHHHhhcCCcEEEEeCCC-CCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccH
Q 011010 158 PFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSG-RHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAA 230 (495)
Q Consensus 158 ~~~~~~~~~dp----~~ia~~~l~~~~~~~~dvviIDTaG-~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~ 230 (495)
-+.+.....|. .+-....+++++..+|||||+|+|. +... ...++..+|..++|..+-.. .++
T Consensus 84 ~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G----------~~~A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 84 FLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQG----------FKNAVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred EecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHH----------HHhhhhccceEEEEcCCCccccccc
Confidence 22222222221 1223445566666799999999964 4221 22233378999999887532 232
Q ss_pred HHHH---HHHh-----ccCCceEEEEeCccCC-CCccchhHH---HHhcCCCe
Q 011010 231 FDQA---QAFK-----QSVSVGAVIVTKMDGH-AKGGGALSA---VAATKSPV 271 (495)
Q Consensus 231 ~~~~---~~f~-----~~~~~~~vIlTK~D~~-~~~g~~ls~---~~~~~~PI 271 (495)
..+. .... ..-+-..+++|+++.. .+.|..+++ .....+|+
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~l 206 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPL 206 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCce
Confidence 2221 1111 1111247899999862 344566654 33344443
No 294
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.64 E-value=1.1e-07 Score=99.04 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=112.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC-cchhHHHHHhhhhhcCcceeccC---CCCChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-RAGAFDQLKQNATKAKIPFYGSY---TESDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~-R~~a~dqL~~~a~~~~i~~~~~~---~~~dp~~ia~~~l 176 (495)
...|+++|+-++||||+++++. +.=|.=--.|.| |.-|.| .+|.-... ++.+|.-+-.+|+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm------~q~VlP~i~~~~~k~Ra~D---------ELpqs~~GktItTTePkfvP~kAv 81 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFM------ELLVLPNISNEYDKERAQD---------ELPQSAAGKTIMTTEPKFVPNEAV 81 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHH------hhhccccccchhHHhHHHh---------ccCcCCCCCCcccCCCccccCcce
Confidence 4579999999999999999999 541110011111 222223 23333333 4555554433333
Q ss_pred HHHhh--cCCcEEEEeCCCCCcchHHHHHHHHH----------------------HHHHhc-CCCEEEEEe-eCCcc---
Q 011010 177 ETFKK--ENCDLIIVDTSGRHKQEAALFEEMRQ----------------------VSEATV-NPDLVIFVM-DSSIG--- 227 (495)
Q Consensus 177 ~~~~~--~~~dvviIDTaG~~~~~~~l~~el~~----------------------i~~~i~-~~d~vllVv-Da~~g--- 227 (495)
+-... -...+.+|||+|+.....--..+... ....+. .+|..++|. |++.+
T Consensus 82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~ 161 (492)
T TIGR02836 82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIP 161 (492)
T ss_pred EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccc
Confidence 32221 14789999999973221100000011 334444 688888888 88632
Q ss_pred -----ccHHHHHHHHhccCCceEEEEeCccCCC-Cccchh-HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCC
Q 011010 228 -----QAAFDQAQAFKQSVSVGAVIVTKMDGHA-KGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 300 (495)
Q Consensus 228 -----~~~~~~~~~f~~~~~~~~vIlTK~D~~~-~~g~~l-s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gd 300 (495)
.........+++...+..+|+||.|... ....+. ......+.|+..++.-+ +...|
T Consensus 162 Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~-----------------l~~~D 224 (492)
T TIGR02836 162 REDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES-----------------MRESD 224 (492)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH-----------------cCHHH
Confidence 1223456677776667799999999542 221222 22233455555443211 23345
Q ss_pred cHHHHHHHHHhCCCCCc----hHHhhccccchhcHHHH----HHHHHHHhccCChhHHhh
Q 011010 301 WSGFMDKIHEVVPMDQQ----PELLQKLSEGNFTLRIM----YEQFQNILKMGPIGQVFS 352 (495)
Q Consensus 301 i~~L~e~i~~~~~~~~~----~~~~~~~~~~~f~~~d~----~~ql~~~~k~g~~~~~~~ 352 (495)
+..+++.+.--+|..+. .+..+.+....-...++ ++.++.+.++..+.....
T Consensus 225 I~~il~~vL~EFPv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~ 284 (492)
T TIGR02836 225 ILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVYRLRDVDNVVG 284 (492)
T ss_pred HHHHHHHHHhcCCceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhc
Confidence 56666665554442221 23334444443333333 334444555555555554
No 295
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.64 E-value=5.9e-07 Score=95.45 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhc-cCCceEEEEeCccCCCCccc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g~ 259 (495)
+.+.|+||||.. .+.. .+...+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|.......
T Consensus 85 ~~i~liDtPG~~----~f~~---~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 85 RRVSFVDAPGHE----TLMA---TMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred cEEEEEECCCHH----HHHH---HHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhH
Confidence 578999999952 2322 2333333789999999998542 22223332222 23335788999998643211
Q ss_pred h--hHHHHhcCCCeEEeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 260 A--LSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 260 ~--ls~~~~~~~PI~fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
. ..... +.+.. .....|..++|+..|.| ++.|++.+.+.+++
T Consensus 158 ~~~~~~i~------------~~l~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIK------------EFVKGTVAENAPIIPVSALHKVN-IDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHH------------HHhccccCCCCeEEEEECCCCcC-HHHHHHHHHHhCCC
Confidence 0 11111 00000 11234567899999999 99999999987753
No 296
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.63 E-value=4.3e-08 Score=99.17 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=90.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|.+||.||+||||++++++ ..|+-|.+ .++||.. |..+.... ...
T Consensus 162 VGLVG~PNaGKSTlls~vS------~AkPKIad------------YpFTTL~--PnLGvV~~---------------~~~ 206 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVS------AAKPKIAD------------YPFTTLV--PNLGVVRV---------------DGG 206 (369)
T ss_pred cccccCCCCcHHHHHHHHh------hcCCcccC------------Ccccccc--CcccEEEe---------------cCC
Confidence 6899999999999999999 44554444 2344432 11121110 124
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHH-------HHHHHhccC--CceEEEEeCcc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFD-------QAQAFKQSV--SVGAVIVTKMD 252 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~-------~~~~f~~~~--~~~~vIlTK~D 252 (495)
..+|+-|-||.-....+-.---.+..+.++.+-..++|+|.+... ++.+ .+..|...+ ++.+||+||+|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 568999999984432210000022333344566889999987432 2222 233443322 45799999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.......+-... +.+. ....+ +..++|++++.| ++.|+..+.+.++
T Consensus 287 ~~~~~e~~~~~~-------------~~l~~~~~~~-~~~~ISa~t~~g-~~~L~~~~~~~l~ 333 (369)
T COG0536 287 LPLDEEELEELK-------------KALAEALGWE-VFYLISALTREG-LDELLRALAELLE 333 (369)
T ss_pred CCcCHHHHHHHH-------------HHHHHhcCCC-cceeeehhcccC-HHHHHHHHHHHHH
Confidence 543322221111 1111 11111 112299999999 9999999888774
No 297
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.63 E-value=7.6e-08 Score=98.52 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.++++|+|..||||||+++++|.++++.|++|++|+.||
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 368999999999999999999999999999999999998
No 298
>PLN03110 Rab GTPase; Provisional
Probab=98.62 E-value=1.6e-07 Score=90.87 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.|. +.+... .. . ...++++....-. ...
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~------~~~~~~-~~---~-----------~t~g~~~~~~~v~-------------~~~ 58 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFT------RNEFCL-ES---K-----------STIGVEFATRTLQ-------------VEG 58 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCC-CC---C-----------CceeEEEEEEEEE-------------ECC
Confidence 469999999999999999998 332110 00 0 0011111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc---CCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~~~~vIlTK~D~~~ 255 (495)
..+.+.|.||||..... .+ .......++.+++|+|.+....... ....+... -.+..+|.||+|...
T Consensus 59 ~~~~l~l~Dt~G~~~~~-----~~--~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 59 KTVKAQIWDTAGQERYR-----AI--TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred EEEEEEEEECCCcHHHH-----HH--HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 24578899999963221 11 1223347899999999874322111 12222221 123588999999743
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... ..+... ...+...+|+..|.| ++.+++.+.+.+
T Consensus 132 ~~~~~~~~~-------------~~l~~~-~~~~~~e~SA~~g~~-v~~lf~~l~~~i 173 (216)
T PLN03110 132 LRSVAEEDG-------------QALAEK-EGLSFLETSALEATN-VEKAFQTILLEI 173 (216)
T ss_pred ccCCCHHHH-------------HHHHHH-cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 111111 123456789999999 999988886655
No 299
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.62 E-value=1.3e-07 Score=87.77 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc----CCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS----VSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~----~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+. ......+|.+++|+|++...... .....+.+. ..+..+|.||.|...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~--~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 48 PFSLQLWDTAGQERFK-----CIA--STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred EEEEEEEeCCChHHHH-----hhH--HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 4578899999974221 111 12234899999999997532211 122222211 123589999999853
Q ss_pred Cccch-hHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGA-LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~-ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... .... +... ..+. .+...+|+..|.| ++.+++.+.+..
T Consensus 121 ~~~~~~~~~~------------~~~~~~~~~--~~~~e~Sa~~g~~-v~~lf~~l~~~~ 164 (170)
T cd04108 121 PAQYALMEQD------------AIKLAAEMQ--AEYWSVSALSGEN-VREFFFRVAALT 164 (170)
T ss_pred cccccccHHH------------HHHHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 32110 0000 0001 1111 2335689999999 999998887654
No 300
>PLN03108 Rab family protein; Provisional
Probab=98.61 E-value=2.1e-07 Score=89.62 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.|+ +.+.... +.+ ..++.+...... ...
T Consensus 7 ~kivivG~~gvGKStLi~~l~------~~~~~~~----~~~-----------ti~~~~~~~~i~-------------~~~ 52 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFT------DKRFQPV----HDL-----------TIGVEFGARMIT-------------IDN 52 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCCC----CCC-----------CccceEEEEEEE-------------ECC
Confidence 469999999999999999998 3222100 000 001111100000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHh---ccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
..+.+-|+||||..... .+ .......+|.+++|+|++...... .....+. ....+..+|.||+|...
T Consensus 53 ~~i~l~l~Dt~G~~~~~-----~~--~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 53 KPIKLQIWDTAGQESFR-----SI--TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred EEEEEEEEeCCCcHHHH-----HH--HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 13457799999963211 11 112233789999999997532211 1111111 11223589999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+.....+.. +.+ ... ..+...+|+..|.| +..+++++.+.+
T Consensus 126 ~~~~~~~~~-------------~~~~~~~--~~~~~e~Sa~~~~~-v~e~f~~l~~~~ 167 (210)
T PLN03108 126 RRAVSTEEG-------------EQFAKEH--GLIFMEASAKTAQN-VEEAFIKTAAKI 167 (210)
T ss_pred ccCCCHHHH-------------HHHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 321111111 111 111 12456789999999 998887775543
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.61 E-value=8.3e-08 Score=88.27 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HH-HHHHHhccCCceEEEEeCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FD-QAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~-~~~~f~~~~~~~~vIlTK~ 251 (495)
..+++||||||......... + .+.+.+..+|.+++|+++...... .. ..+..........+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~-~--~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT-E--ITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS-H--HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH-H--HHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 46799999999854322111 1 133444589999999999864332 22 2233333345579999985
No 302
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.61 E-value=2.5e-07 Score=94.99 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=85.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh-----hh-cCcceeccCCCCChHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-----TK-AKIPFYGSYTESDPVRIAVEG 175 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a-----~~-~~i~~~~~~~~~dp~~ia~~~ 175 (495)
.+.+|.|.-||||||++++|... ..|.+++|+-.|.-..+--.++.... +- .|+ .++....+......+.
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GC--iCCs~~~~l~~~l~~l 80 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC--ICCSRSNELEDALLDL 80 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHHHhCcCceEEEECCCE--EEEccCchHHHHHHHH
Confidence 47899999999999999999854 35899999998865443322222111 00 111 1112223333333333
Q ss_pred HHHHhh--cCCcEEEEeCCCCCcchHHHHHHH---HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc-CCceEEEEe
Q 011010 176 VETFKK--ENCDLIIVDTSGRHKQEAALFEEM---RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS-VSVGAVIVT 249 (495)
Q Consensus 176 l~~~~~--~~~dvviIDTaG~~~~~~~l~~el---~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~-~~~~~vIlT 249 (495)
+..... ..+|+|+|.|.|..... .+.+.+ ..+...+ .-+.++.|||+.......+....+... ..-+.+|+|
T Consensus 81 ~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~-~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivln 158 (318)
T PRK11537 81 LDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRY-LLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_pred HHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccE-EeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEe
Confidence 333222 15999999999997544 333332 1122223 457899999997543222111111111 123689999
Q ss_pred CccCCCC
Q 011010 250 KMDGHAK 256 (495)
Q Consensus 250 K~D~~~~ 256 (495)
|+|....
T Consensus 159 K~Dl~~~ 165 (318)
T PRK11537 159 KTDVAGE 165 (318)
T ss_pred ccccCCH
Confidence 9998754
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.60 E-value=8.7e-08 Score=96.15 Aligned_cols=102 Identities=18% Similarity=0.072 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
|+|||+|||||||++|+|+ +.++ .++. .+++|+.-..-...... ...+...+...-.+.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt------~~~~-~~~n-----------~pftTi~p~~g~v~v~d-~r~~~l~~~~~~~k~~~ 61 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT------KAGA-EAAN-----------YPFCTIEPNVGIVPVPD-ERLDKLAEIVKPKKIVP 61 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh------CCCC-cccc-----------ccccchhceeeeEEecc-chhhhHHHHhCCceeee
Confidence 5799999999999999999 8777 4444 34444322110110000 00111110000000113
Q ss_pred CcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~ 225 (495)
..+.|+||||.......- +.+ .++...+..+|.+++|||+.
T Consensus 62 ~~i~lvD~pGl~~~a~~~-~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 62 ATIEFVDIAGLVKGASKG-EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred eEEEEEECCCcCCCCchh-hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 468999999986443221 222 44555666899999999985
No 304
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.60 E-value=2.5e-07 Score=86.04 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=59.2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH------HHHHHhc-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD------QAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~------~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||..... .+. ......+|.+++|+|.+....... ....+.. ...+..+|.||+|...
T Consensus 49 ~~~l~i~Dt~G~~~~~-----~l~--~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 49 PALLDILDTAGQAEFT-----AMR--DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred EEEEEEEeCCCchhhH-----HHh--HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 4678899999964221 121 122337899999999875332111 1222211 1124589999999753
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.. .++... ++.+ ... -.+...+|++.|.| ++.+++++...+
T Consensus 122 ~~--~v~~~~-----------~~~~a~~~--~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 163 (172)
T cd04141 122 QR--QVTTEE-----------GRNLAREF--NCPFFETSAALRHY-IDDAFHGLVREI 163 (172)
T ss_pred cC--ccCHHH-----------HHHHHHHh--CCEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 21 011000 0111 111 12445689999999 999998886544
No 305
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.60 E-value=3.2e-07 Score=89.32 Aligned_cols=107 Identities=20% Similarity=0.163 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++++. +.+.. . +.+ ..+..++... ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~------~~~f~--~---~~~-----------Tig~~~~~~~-----------------~~ 42 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYM------ERRFK--D---TVS-----------TVGGAFYLKQ-----------------WG 42 (220)
T ss_pred EEEEECCCCCcHHHHHHHHh------cCCCC--C---CCC-----------ccceEEEEEE-----------------ee
Confidence 48899999999999999998 32211 0 000 0111111100 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHH---HHHhc---cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQA---QAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~---~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... +.. .....+|.+++|+|.+..+...+.. ..+.+ ...+.++|.||+|+..
T Consensus 43 ~~~l~iwDt~G~e~~~~-----l~~--~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFHG-----LGS--MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccchh-----hHH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 56789999999743221 111 1234889999999988543222211 11111 1124589999999853
No 306
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.60 E-value=2.9e-07 Score=84.45 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=57.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHH---HhccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~---f~~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||||..... . + .......+|.+++|.|.+....-.. .... ......+..+|.||.|....
T Consensus 48 ~~~l~i~D~~g~~~~~-~----~--~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 48 KVRIQIWDTAGQERYQ-T----I--TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred EEEEEEEeCCCcHhHH-h----h--HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 3567899999964322 1 1 1122347899999999875322111 1111 11111245889999997432
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
........ +.+. .+. .+-..+|+..|.| ++.+++++.+.
T Consensus 121 ~~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~-v~~~f~~l~~~ 160 (161)
T cd04117 121 RQVGDEQG-------------NKLAKEYG--MDFFETSACTNSN-IKESFTRLTEL 160 (161)
T ss_pred cCCCHHHH-------------HHHHHHcC--CEEEEEeCCCCCC-HHHHHHHHHhh
Confidence 11000000 1110 111 2335689999998 99999888653
No 307
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.58 E-value=5.7e-07 Score=90.31 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
..+|++||.+|+||||++++|... +-.-...+..+.||-+. ....|
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~A-al~p~drLFATLDpT~h-----------~a~Lp---------------------- 223 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKA-ALYPNDRLFATLDPTLH-----------SAHLP---------------------- 223 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhh-hcCccchhheeccchhh-----------hccCC----------------------
Confidence 358999999999999999999821 11123344444444222 11111
Q ss_pred hcCCcEEEEeCCCCCc-chHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhccCCc--------eEEEE
Q 011010 181 KENCDLIIVDTSGRHK-QEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQSVSV--------GAVIV 248 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~-~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~~~~--------~~vIl 248 (495)
.+..+++.||-|+.. ..-.+.+..+...+.+..+|.++-|+|.+..... ......+++ +++ -.=|-
T Consensus 224 -sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 224 -SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVD 301 (410)
T ss_pred -CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhc
Confidence 266789999999854 3445677676666666699999999999864321 112222222 221 12345
Q ss_pred eCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 249 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 249 TK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
||+|..... ..-++ +-...+|++.|.| +++|++.+.+.+
T Consensus 302 nkiD~e~~~-----------------------~e~E~-n~~v~isaltgdg-l~el~~a~~~kv 340 (410)
T KOG0410|consen 302 NKIDYEEDE-----------------------VEEEK-NLDVGISALTGDG-LEELLKAEETKV 340 (410)
T ss_pred ccccccccc-----------------------Ccccc-CCccccccccCcc-HHHHHHHHHHHh
Confidence 666643210 01111 2256899999999 999999888776
No 308
>PTZ00258 GTP-binding protein; Provisional
Probab=98.57 E-value=1.6e-07 Score=98.37 Aligned_cols=105 Identities=15% Similarity=0.023 Sum_probs=60.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|||+|||||||++|+|. +.++ .++. .+++|+.-..-..... ...++........-+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt------~~~~-~v~n-----------~pftTi~p~~g~v~~~-d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALC------KQQV-PAEN-----------FPFCTIDPNTARVNVP-DERFDWLCKHFKPKS 81 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHh------cCcc-cccC-----------CCCCcccceEEEEecc-cchhhHHHHHcCCcc
Confidence 3469999999999999999998 7665 4444 3444433221111011 111111111111111
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~ 225 (495)
.-..++.+|||||.......- +.+ .++...+..+|.+++|+|+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g-~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEG-EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcch-hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 124579999999986443221 122 34555666899999999985
No 309
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.57 E-value=3.1e-07 Score=88.29 Aligned_cols=108 Identities=14% Similarity=0.041 Sum_probs=60.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||||..... .+. ......+|.+++|+|.+......+ ....+.. .-.+..+|.||+|....
T Consensus 48 ~v~l~iwDtaGqe~~~-----~l~--~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 48 KIRLQIWDTAGQERFN-----SIT--SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred EEEEEEEeCCCchhhH-----HHH--HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 4678899999974221 121 223448899999999885432111 1122221 11235889999998532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........ +.+ ..+. ..+...+|+..|.| +..+++++.+.+
T Consensus 121 ~~v~~~~~-------------~~~a~~~~-~~~~~etSAktg~g-V~e~F~~l~~~~ 162 (202)
T cd04120 121 REISRQQG-------------EKFAQQIT-GMRFCEASAKDNFN-VDEIFLKLVDDI 162 (202)
T ss_pred cccCHHHH-------------HHHHHhcC-CCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 11000000 111 0110 12334689999999 999998876543
No 310
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.57 E-value=1.1e-07 Score=89.72 Aligned_cols=165 Identities=11% Similarity=0.090 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.+. +... .+.|.|.. ...+..... ....
T Consensus 2 kivivG~~~vGKTsli~~~~------~~~~----~~~~~~t~-----------~~~~~~~i~--------------~~~~ 46 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFT------RGYF----PQVYEPTV-----------FENYVHDIF--------------VDGL 46 (189)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCC----CCccCCcc-----------eeeeEEEEE--------------ECCE
Confidence 58999999999999999997 3211 11121110 000000000 0012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||||..... .+... ....+|.+++|.|.+....... ....+... ..+..+|.||+|+...
T Consensus 47 ~~~l~i~Dt~G~~~~~-----~l~~~--~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 47 HIELSLWDTAGQEEFD-----RLRSL--SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred EEEEEEEECCCChhcc-----ccccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 4678999999963221 12111 2237899999988765322111 12222221 1235899999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... .......+.+......|... .... ..+-..+|+..|.| ++.+++++.+.+
T Consensus 120 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~-v~e~f~~l~~~~ 173 (189)
T cd04134 120 RNE-RDDLQRYGKHTISYEEGLAVAKRIN-ALRYLECSAKLNRG-VNEAFTEAARVA 173 (189)
T ss_pred hhh-HHHHhhccCCCCCHHHHHHHHHHcC-CCEEEEccCCcCCC-HHHHHHHHHHHH
Confidence 211 11111111111000011111 0111 12345689999999 999999987655
No 311
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.56 E-value=4.8e-07 Score=94.55 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+.|+|+..---|||||+-+|.+.-.. .+.+|+=-..|. .-+...-+|.+....+..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDS---------nDlEkERGITILaKnTav------------- 63 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDS---------NDLEKERGITILAKNTAV------------- 63 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCc---------cchhhhcCcEEEecccee-------------
Confidence 45999999999999999999843211 112221110111 122333455555433321
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhccCCceEEEEeCccCC-C
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMDGH-A 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~~~~~~~vIlTK~D~~-~ 255 (495)
.++++.+-||||||.... -.|.+++.+-+ |.++++|||..|. .-.-.-+++...+++ +||+||+|.. +
T Consensus 64 ~~~~~~INIvDTPGHADF----GGEVERvl~MV---DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~A 135 (603)
T COG1217 64 NYNGTRINIVDTPGHADF----GGEVERVLSMV---DGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRPDA 135 (603)
T ss_pred ecCCeEEEEecCCCcCCc----cchhhhhhhhc---ceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCCCC
Confidence 235788999999998533 34455555544 9999999998763 434455777777777 8999999983 4
Q ss_pred CccchhH----HHHh-------cCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCc-hHHhhc
Q 011010 256 KGGGALS----AVAA-------TKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQ-PELLQK 323 (495)
Q Consensus 256 ~~g~~ls----~~~~-------~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~-~~~~~~ 323 (495)
+...+.. .... .+.||.|.+.-.....+.+-++ ..|+..|++.|.+++|.-.. .+-+-.
T Consensus 136 rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~---------~~~m~pLfe~I~~hvp~P~~~~d~PlQ 206 (603)
T COG1217 136 RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE---------ADDMAPLFETILDHVPAPKGDLDEPLQ 206 (603)
T ss_pred CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc---------ccchhHHHHHHHHhCCCCCCCCCCCeE
Confidence 4333332 2211 2445555553333322222221 34589999999999974332 233344
Q ss_pred cccchhcHHHHHH
Q 011010 324 LSEGNFTLRIMYE 336 (495)
Q Consensus 324 ~~~~~f~~~d~~~ 336 (495)
++-..+++++|+-
T Consensus 207 ~qvt~Ldyn~y~G 219 (603)
T COG1217 207 MQVTQLDYNSYVG 219 (603)
T ss_pred EEEEeeccccccc
Confidence 4445555555543
No 312
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.55 E-value=3.2e-07 Score=98.41 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=40.6
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHH-hccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAF-KQSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f-~~~~~~~~vIlTK~ 251 (495)
.++.+.||||||.. ++...+ ...+..+|..++|+|+..|. ...+.+... ...++...+++||+
T Consensus 83 ~~~~i~liDtPGh~----df~~~~---~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 83 TKYYCTVIDAPGHR----DFIKNM---ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred CCEEEEEEECCCHH----HHHHHH---HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 46789999999963 333333 22333789999999998651 112222211 12244347789999
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
|..
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 975
No 313
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.55 E-value=1.3e-07 Score=91.38 Aligned_cols=120 Identities=16% Similarity=0.247 Sum_probs=65.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++|.|. |.++.-..... .+.+. .+..+.. . ..
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~~---------~~~t~--~~~~~~~-~----------------~~ 47 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSSA---------KSVTQ--ECQKYSG-E----------------VD 47 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS-SS--TTT---------SS--S--S-EEEEE-E----------------ET
T ss_pred EEEEECCCCCCHHHHHHHHh------cccceeecccc---------CCccc--ccceeee-e----------------ec
Confidence 58999999999999999999 87763222100 01111 1111110 0 13
Q ss_pred CCcEEEEeCCCCCcc---hHHHHHHHHHHHH-HhcCCCEEEEEeeCCccc-cHHHHHH----HHhcc-CCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVSE-ATVNPDLVIFVMDSSIGQ-AAFDQAQ----AFKQS-VSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~---~~~l~~el~~i~~-~i~~~d~vllVvDa~~g~-~~~~~~~----~f~~~-~~~~~vIlTK~D 252 (495)
+..+.+|||||+... ++....++.+... ....++.++||++...-. .....++ .|... ..-+.||+|..|
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 678999999998543 3445555544332 233689999999987322 2222233 33322 234789999998
Q ss_pred CCCC
Q 011010 253 GHAK 256 (495)
Q Consensus 253 ~~~~ 256 (495)
....
T Consensus 128 ~~~~ 131 (212)
T PF04548_consen 128 ELED 131 (212)
T ss_dssp GGTT
T ss_pred cccc
Confidence 6433
No 314
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.54 E-value=5.3e-07 Score=86.54 Aligned_cols=110 Identities=24% Similarity=0.257 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|++||||||+++.|. +.+.. .++-+ .+ .++..+..... ..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~------~~~~~----~t~~s---------~~-~~~~~~~~~~~---------------~~ 46 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLT------TGKYR----STVTS---------IE-PNVATFILNSE---------------GK 46 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHh------cCCCC----CccCc---------Ee-ecceEEEeecC---------------CC
Confidence 58999999999999999998 32110 00000 00 01111110000 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCC-CEEEEEeeCCccc-cHHHHHHH----Hh------ccCCceEEEEeC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNP-DLVIFVMDSSIGQ-AAFDQAQA----FK------QSVSVGAVIVTK 250 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~-d~vllVvDa~~g~-~~~~~~~~----f~------~~~~~~~vIlTK 250 (495)
+..+.|+||||.......+ ...+..+ +.++||+|++..+ ...+.+.. +. ... +..+++||
T Consensus 47 ~~~~~l~D~pG~~~~~~~~-------~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~-pvliv~NK 118 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKL-------LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKI-PVLIACNK 118 (203)
T ss_pred CceEEEEECCCCHHHHHHH-------HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCC-CEEEEecc
Confidence 5678999999974322111 1222255 9999999998753 22221111 11 123 35899999
Q ss_pred ccCCC
Q 011010 251 MDGHA 255 (495)
Q Consensus 251 ~D~~~ 255 (495)
.|...
T Consensus 119 ~Dl~~ 123 (203)
T cd04105 119 QDLFT 123 (203)
T ss_pred hhhcc
Confidence 99753
No 315
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.7e-07 Score=99.45 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+.++||..---|||||+-+|... ...++.+..+.-..|.|.-.- .-||.+...... +.+-..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~-------tg~i~~~~~q~q~LDkl~vER-ERGITIkaQtas----------ify~~~ 122 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLEL-------TGTIDNNIGQEQVLDKLQVER-ERGITIKAQTAS----------IFYKDG 122 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHH-------hCCCCCCCchhhhhhhhhhhh-hcCcEEEeeeeE----------EEEEcC
Confidence 56888888889999999999832 124444445554555443222 223433221110 000001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhccCCceEEEEeCccCCC-Cc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQSVSVGAVIVTKMDGHA-KG 257 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~~~~~~vIlTK~D~~~-~~ 257 (495)
..|-+-+|||||...... |..+. +..+|-+++||||+.|..+ .+...+|...+.+ +.|+||+|... +.
T Consensus 123 ~~ylLNLIDTPGHvDFs~----EVsRs---laac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~i-IpVlNKIDlp~adp 194 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSG----EVSRS---LAACDGALLVVDASQGVQAQTVANFYLAFEAGLAI-IPVLNKIDLPSADP 194 (650)
T ss_pred CceEEEeecCCCcccccc----eeheh---hhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeE-EEeeeccCCCCCCH
Confidence 258889999999854332 22222 2257999999999987554 4455677666655 88999999843 32
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
......+. .+-++ +..+..++|+++|.| +++++++|.+.+|.-
T Consensus 195 e~V~~q~~-------------~lF~~-~~~~~i~vSAK~G~~-v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 195 ERVENQLF-------------ELFDI-PPAEVIYVSAKTGLN-VEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHH-------------HHhcC-CccceEEEEeccCcc-HHHHHHHHHhhCCCC
Confidence 22222221 11111 223557899999999 999999999999743
No 316
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.52 E-value=6e-07 Score=88.92 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.+. +.+.. +.|-+... .. ....+.. . ..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~------~~~f~----~~y~pTi~-d~-------~~k~~~i-~----------------~~ 46 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFL------GGRFE----EQYTPTIE-DF-------HRKLYSI-R----------------GE 46 (247)
T ss_pred EEEEECcCCCCHHHHHHHHH------cCCCC----CCCCCChh-Hh-------EEEEEEE-C----------------CE
Confidence 48999999999999999998 22110 11111100 00 0000110 0 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc------------cCCceEEE
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ------------SVSVGAVI 247 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~------------~~~~~~vI 247 (495)
.+.+-|+||+|..... .+... ....+|.+++|+|.+.... .......+.. .-.+..+|
T Consensus 47 ~~~l~I~Dt~G~~~~~-----~~~~~--~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIiv 119 (247)
T cd04143 47 VYQLDILDTSGNHPFP-----AMRRL--SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119 (247)
T ss_pred EEEEEEEECCCChhhh-----HHHHH--HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEE
Confidence 4678899999964321 12211 1237899999999875322 1111111111 11245899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 248 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 248 lTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.||+|.......-..... +... .....+...+|+..|.| ++.+++++.+..
T Consensus 120 gNK~Dl~~~~~v~~~ei~------------~~~~-~~~~~~~~evSAktg~g-I~elf~~L~~~~ 170 (247)
T cd04143 120 GNKADRDFPREVQRDEVE------------QLVG-GDENCAYFEVSAKKNSN-LDEMFRALFSLA 170 (247)
T ss_pred EECccchhccccCHHHHH------------HHHH-hcCCCEEEEEeCCCCCC-HHHHHHHHHHHh
Confidence 999998542111111110 0000 00112346789999999 999999998754
No 317
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.52 E-value=2.3e-07 Score=85.16 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
...|+++|.|||||||++|+|. |.+.+.++.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~------~~~~~~~~~ 132 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR------SKKVCKVAP 132 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh------cCCceeeCC
Confidence 4568899999999999999999 888877776
No 318
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.51 E-value=2.9e-07 Score=95.51 Aligned_cols=102 Identities=19% Similarity=0.065 Sum_probs=58.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcc-eeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP-FYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~-~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.|+|||.|||||||++|+|. +.+ +.++. .+++|+.... +...... -.+...+....-+.
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt------~~~-~~v~n-----------ypftTi~p~~G~~~v~d~--r~~~l~~~~~p~~~ 63 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALT------KAG-AEAAN-----------YPFCTIEPNVGVVPVPDP--RLDKLAEIVKPKKI 63 (364)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-Ceecc-----------cccccccceEEEEEeccc--cchhhHHhcCCccc
Confidence 59999999999999999999 777 45554 3445533211 1111110 00000000000001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~ 225 (495)
-...+.|+||||........ +.+ .+....+..+|.+++|||+.
T Consensus 64 ~~a~i~lvD~pGL~~~a~~g-~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 64 VPATIEFVDIAGLVKGASKG-EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred cCceEEEEECCCCCCCCChH-HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12468999999986433221 222 44555666999999999986
No 319
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.50 E-value=8.7e-07 Score=86.04 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++++.. |.-.. .|. ...++.++...... .
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~-----~~f~~-----~~~-----------~tig~~~~~~~~~~-------------~ 58 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KYE-----------PTIGVEVHPLDFFT-------------N 58 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhh-----CCCCC-----ccC-----------CccceeEEEEEEEE-------------C
Confidence 45799999999999999999762 21000 000 01112211100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHH---hccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAF---KQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f---~~~~~~~~vIlTK~D~~ 254 (495)
...+.+.|.||||..... .+. ......+|.+++|+|.+........ ...+ ....+ ..+|.||+|..
T Consensus 59 ~~~~~l~i~Dt~G~~~~~-----~~~--~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~ 130 (219)
T PLN03071 59 CGKIRFYCWDTAGQEKFG-----GLR--DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 130 (219)
T ss_pred CeEEEEEEEECCCchhhh-----hhh--HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhh
Confidence 124678899999964321 121 1223478999999998854322211 1112 22234 58999999985
Q ss_pred CCccc--hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~--~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+.-. .+.... ....+...+|+..|.| +..+++++.+.+
T Consensus 131 ~~~v~~~~~~~~~------------------~~~~~~~e~SAk~~~~-i~~~f~~l~~~~ 171 (219)
T PLN03071 131 NRQVKAKQVTFHR------------------KKNLQYYEISAKSNYN-FEKPFLYLARKL 171 (219)
T ss_pred hccCCHHHHHHHH------------------hcCCEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 33110 011110 0011234689999999 999999887655
No 320
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.50 E-value=2.3e-07 Score=86.67 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+. ...+. ... +..+|.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~--~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~-piilvgnK~Dl~~ 119 (175)
T cd01874 48 PYTLGLFDTAGQEDYD-----RLRP--LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 119 (175)
T ss_pred EEEEEEEECCCccchh-----hhhh--hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEECHhhhh
Confidence 4678899999974322 1111 123478999999998754322111 11222 223 3589999999753
Q ss_pred CccchhHHHHhc-CCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KGGGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~g~~ls~~~~~-~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ...+.+... ..+|. ...|+.+..-....+...+|+..|.| +..+++.+..
T Consensus 120 ~~-~~~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~e~SA~tg~~-v~~~f~~~~~ 172 (175)
T cd01874 120 DP-STIEKLAKNKQKPIT-PETGEKLARDLKAVKYVECSALTQKG-LKNVFDEAIL 172 (175)
T ss_pred Ch-hhHHHhhhccCCCcC-HHHHHHHHHHhCCcEEEEecCCCCCC-HHHHHHHHHH
Confidence 31 111111110 01110 00111111001112446789999999 9999988765
No 321
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.50 E-value=1.1e-06 Score=70.65 Aligned_cols=75 Identities=31% Similarity=0.475 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHH
Q 011010 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (495)
Q Consensus 6 l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL 83 (495)
|+++|+.+++++.++..++++.+++.+.+|..+|+++||+++++.+++++++..... ..++++.+.+.++|+++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 688999999999998888999999999999999999999999999999999993332 456778889999999886
No 322
>PRK12740 elongation factor G; Reviewed
Probab=98.49 E-value=1.1e-06 Score=98.93 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=42.1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
.++++.||||||... +..+. ...+..+|.+++|+|++.+..... ........-.+..+|+||+|...
T Consensus 58 ~~~~i~liDtPG~~~----~~~~~---~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 58 KGHKINLIDTPGHVD----FTGEV---ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred CCEEEEEEECCCcHH----HHHHH---HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 478999999999743 22222 223336899999999987643222 22222222223588999999853
No 323
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.49 E-value=3.3e-07 Score=86.28 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++..+. +.+- .+.|.| ..+..++..... ....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~------~~~f----~~~~~~-----------T~g~~~~~~~i~-------------~~~~ 47 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYV------EGEF----DEDYIQ-----------TLGVNFMEKTIS-------------IRGT 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCC----CCCCCC-----------ccceEEEEEEEE-------------ECCE
Confidence 48999999999999999997 2211 011111 011111110000 0012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||+|..... .+. ......+|.+++|+|.+......+ ....+. ....+ .+|.||+|....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~--~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~ 119 (182)
T cd04128 48 EITFSIWDLGGQREFI-----NML--PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFAD 119 (182)
T ss_pred EEEEEEEeCCCchhHH-----Hhh--HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccc
Confidence 4678899999974321 121 123448899999999875432211 112221 22223 688999998421
Q ss_pred cc-chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g-~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.. ....... ..++.+.+... .+...+|++.|.| ++.+++++.+.+
T Consensus 120 ~~~~~~~~~~---------~~~~~~a~~~~-~~~~e~SAk~g~~-v~~lf~~l~~~l 165 (182)
T cd04128 120 LPPEEQEEIT---------KQARKYAKAMK-APLIFCSTSHSIN-VQKIFKIVLAKA 165 (182)
T ss_pred ccchhhhhhH---------HHHHHHHHHcC-CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 10 0000000 00111111111 2446789999999 999999887654
No 324
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.49 E-value=3.8e-07 Score=85.99 Aligned_cols=114 Identities=25% Similarity=0.317 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+||+|||||++..+|.. |..+.-++. . ..++.+.. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~-----~~~~~T~tS-------------~--e~n~~~~~-~~---------------- 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN-----GKTVPTVTS-------------M--ENNIAYNV-NN---------------- 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH-----SS---B----------------S--SEEEECCG-SS----------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhc-----CCcCCeecc-------------c--cCCceEEe-ec----------------
Confidence 35799999999999999999994 322221111 0 11111111 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHh---------ccCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~---------~~~~~~~vIlTK 250 (495)
..+..+.+||+||.......+.+++. ....+-.++||||++..+. ..+.++.+. ....+..+++||
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~----~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELK----YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHH----HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhh----chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeC
Confidence 12457899999997655544444432 1225678999999985432 222222111 122345889999
Q ss_pred ccCCC
Q 011010 251 MDGHA 255 (495)
Q Consensus 251 ~D~~~ 255 (495)
.|...
T Consensus 122 ~Dl~~ 126 (181)
T PF09439_consen 122 QDLFT 126 (181)
T ss_dssp TTSTT
T ss_pred ccccc
Confidence 99854
No 325
>PRK13351 elongation factor G; Reviewed
Probab=98.49 E-value=1.5e-06 Score=98.29 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=41.6
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
.++.+.|+||||... +..+. ..++..+|.+++|+|++.+.... ...........+..+|+||+|...
T Consensus 71 ~~~~i~liDtPG~~d----f~~~~---~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 71 DNHRINLIDTPGHID----FTGEV---ERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred CCEEEEEEECCCcHH----HHHHH---HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 367899999999742 22222 23333679999999998664322 222223222223588999999753
No 326
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.48 E-value=2.9e-07 Score=85.87 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=60.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhc---cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+.. .....+|.+++|.|.+....-.+. ...+.. .. +..+|.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~--~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~-piilvgnK~Dl~~ 119 (174)
T cd01871 48 PVNLGLWDTAGQEDYD-----RLRP--LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 119 (174)
T ss_pred EEEEEEEECCCchhhh-----hhhh--hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEeeChhhcc
Confidence 4678899999963221 1211 123478999999999753321111 111221 23 4589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.....-........++. ...|+.+ ..+. ..+...+|+..|.| ++.+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~~~e~Sa~~~~~-i~~~f~~l~~ 172 (174)
T cd01871 120 DKDTIEKLKEKKLTPIT-YPQGLAMAKEIG-AVKYLECSALTQKG-LKTVFDEAIR 172 (174)
T ss_pred ChhhHHHHhhccCCCCC-HHHHHHHHHHcC-CcEEEEecccccCC-HHHHHHHHHH
Confidence 21111111110011110 0011111 1111 12445689999999 9999988765
No 327
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.47 E-value=1e-06 Score=94.58 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-ccH--HHHHHHHh-ccCCceEEEEeCccCCCCccc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QAA--FDQAQAFK-QSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~~--~~~~~~f~-~~~~~~~vIlTK~D~~~~~g~ 259 (495)
..+.||||||. +.+... +...+..+|.+++|+|+..+ ... .+.+.... -.++...+|+||+|..... .
T Consensus 117 ~~i~~IDtPGH----~~fi~~---m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~-~ 188 (460)
T PTZ00327 117 RHVSFVDCPGH----DILMAT---MLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA-Q 188 (460)
T ss_pred ceEeeeeCCCH----HHHHHH---HHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH-H
Confidence 46899999995 233333 33333378999999999864 121 12222111 1234457899999986421 1
Q ss_pred hhHHHHhcCCCeEEeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
......... +.+.. .....|.+++|++.|.| ++.|++.+.+.++.
T Consensus 189 ~~~~~~ei~---------~~l~~~~~~~~~iipVSA~~G~n-I~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 189 AQDQYEEIR---------NFVKGTIADNAPIIPISAQLKYN-IDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHH---------HHHHhhccCCCeEEEeeCCCCCC-HHHHHHHHHhhCCC
Confidence 111111000 00000 11345778899999999 99999999987764
No 328
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.46 E-value=6.5e-07 Score=90.14 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
..-.|+++|.+|+||||++|.|. +.++......+-.+.. -...+ ..+..+......+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~------~~~~~~~~~~~~~~~~---~~~~T--~~i~~~~~~i~~~------------ 59 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLF------NTKLIPSDYPPDPAEE---HIDKT--VEIKSSKAEIEEN------------ 59 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHH------cCCCccccCCCCcccc---ccCCc--eEEEEEEEEEEEC------------
Confidence 34579999999999999999998 6555433221100000 00001 1111111100000
Q ss_pred hhcCCcEEEEeCCCCCcch------HHHHHHHH-----------HHHH--Hh--cCCCEEEEEeeCCc-ccc--HHHHHH
Q 011010 180 KKENCDLIIVDTSGRHKQE------AALFEEMR-----------QVSE--AT--VNPDLVIFVMDSSI-GQA--AFDQAQ 235 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~------~~l~~el~-----------~i~~--~i--~~~d~vllVvDa~~-g~~--~~~~~~ 235 (495)
.....+.||||||+.... ..+...+. ++.. .. ..+|.++|+++++. +.. ....++
T Consensus 60 -g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk 138 (276)
T cd01850 60 -GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMK 138 (276)
T ss_pred -CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHH
Confidence 012568999999974321 11111110 1111 11 14678899999863 322 344566
Q ss_pred HHhccCCceEEEEeCccCCC
Q 011010 236 AFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 236 ~f~~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.++ ..+|+||+|...
T Consensus 139 ~l~~~v~-vi~VinK~D~l~ 157 (276)
T cd01850 139 RLSKRVN-IIPVIAKADTLT 157 (276)
T ss_pred HHhccCC-EEEEEECCCcCC
Confidence 6665555 489999999864
No 329
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.45 E-value=3.3e-07 Score=88.35 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=34.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+++|||||||||-|+-+...|...|+++++|..||
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 578999999999999999999999999999999997
No 330
>PLN03126 Elongation factor Tu; Provisional
Probab=98.45 E-value=1.2e-06 Score=94.69 Aligned_cols=126 Identities=19% Similarity=0.149 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE--EEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa--IVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|.+++|||||+++|...+..-+.+.. ....|... +.-..+.+..-...+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~----~Er~rGiTi~~~~~~------------------ 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAP----EERARGITINTATVE------------------ 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCCh----hHHhCCeeEEEEEEE------------------
Confidence 346999999999999999999954432111100 00111110 000111111100000
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHh-ccCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~-~~~~~~~vIlTK~D~~~ 255 (495)
+..++..+.||||||... +...+ ...+..+|.+++|+|+..|... .+.+.... ..++...+++||+|...
T Consensus 139 ~~~~~~~i~liDtPGh~~----f~~~~---~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 139 YETENRHYAHVDCPGHAD----YVKNM---ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EecCCcEEEEEECCCHHH----HHHHH---HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 011366889999999642 33333 3333378999999999866332 22222222 22343467899999864
No 331
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.44 E-value=1.2e-06 Score=83.31 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||++.++. +.+. ..+|.+ ..+..+...... ...
T Consensus 7 ~KivviG~~~vGKTsll~~~~------~~~~----~~~~~~-----------t~~~~~~~~~i~-------------~~~ 52 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQ------DGST----ESPYGY-----------NMGIDYKTTTIL-------------LDG 52 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCC----CCCCCC-----------cceeEEEEEEEE-------------ECC
Confidence 469999999999999999998 2110 011111 111111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh---ccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|.||||..... .+. ......+|.+++|.|.+....... ....+. ...+ ..+|-||.|...
T Consensus 53 ~~~~l~iwDt~G~~~~~-----~l~--~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~ 124 (189)
T cd04121 53 RRVKLQLWDTSGQGRFC-----TIF--RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAF 124 (189)
T ss_pred EEEEEEEEeCCCcHHHH-----HHH--HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchh
Confidence 24677899999974322 121 122348999999999875432211 112222 2233 589999999843
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
....-.+.. +.+..-. -.+...+|+..|.| ++.+++++.+.+
T Consensus 125 ~~~v~~~~~-------------~~~a~~~-~~~~~e~SAk~g~~-V~~~F~~l~~~i 166 (189)
T cd04121 125 KRQVATEQA-------------QAYAERN-GMTFFEVSPLCNFN-ITESFTELARIV 166 (189)
T ss_pred ccCCCHHHH-------------HHHHHHc-CCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 210000000 1110001 12345689999999 999999887644
No 332
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.43 E-value=6.5e-07 Score=87.32 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=86.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++..++ +..- .+.|-|...+. ....+. .. ..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~------~~~f----~~~y~pTi~~~-------~~~~~~--~~----------------~~ 47 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFA------KDAY----PGSYVPTVFEN-------YTASFE--ID----------------KR 47 (222)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCC----CCccCCccccc-------eEEEEE--EC----------------CE
Confidence 58999999999999999998 2110 11122211000 000110 00 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHh-------ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFK-------QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~-------~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||+|....+ .+.. .....+|.+++|.|.+...........+. ...+ ..+|.||+|+..
T Consensus 48 ~v~L~iwDt~G~e~~~-----~l~~--~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~ 119 (222)
T cd04173 48 RIELNMWDTSGSSYYD-----NVRP--LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRT 119 (222)
T ss_pred EEEEEEEeCCCcHHHH-----HHhH--HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECccccc
Confidence 4678899999974221 1211 12348899999999886433222212121 2233 588999999854
Q ss_pred CccchhHHHHhc-CCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~ls~~~~~-~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
... .+...... -.||.. ..|+.+.......+-...|+..+.+++..+++.+...
T Consensus 120 ~~~-~~~~~~~~~~~pIs~-e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 120 DLA-TLRELSKQRLIPVTH-EQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred chh-hhhhhhhccCCccCH-HHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 321 11111111 123321 1334443222222445679998885598888887664
No 333
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.43 E-value=5.4e-06 Score=86.32 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+-.|+|+|.+|+||||++|.|- |.. ..|..-+ ..- ...+|....+ |...
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr------Gl~----~~d~~aA-~tG--v~etT~~~~~-Y~~p----------------- 83 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR------GLG----HEDEGAA-PTG--VVETTMEPTP-YPHP----------------- 83 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT------T------TTSTTS---SS--SHSCCTS-EE-EE-S-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCC----CCCcCcC-CCC--CCcCCCCCee-CCCC-----------------
Confidence 4469999999999999999996 420 0111000 000 0012222222 2211
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~ 253 (495)
...++++-|.||.....-.....+.++. ...-|.+++|.+..-.......++.+...-....+|-||+|.
T Consensus 84 -~~pnv~lWDlPG~gt~~f~~~~Yl~~~~--~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 84 -KFPNVTLWDLPGIGTPNFPPEEYLKEVK--FYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -S-TTEEEEEE--GGGSS--HHHHHHHTT--GGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred -CCCCCeEEeCCCCCCCCCCHHHHHHHcc--ccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 1457999999998655443334443322 225687777777665566667777777766678999999996
No 334
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.6e-06 Score=85.58 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=37.6
Q ss_pred CeEEE-EEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch
Q 011010 101 PSVIM-FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (495)
Q Consensus 101 ~~vI~-ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~ 143 (495)
.++|+ +-|.-||||||++.+||..|++.|++|.+.+.|.+.|.
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS 90 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS 90 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCC
Confidence 34444 45999999999999999999999999999999998764
No 335
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.41 E-value=4.3e-06 Score=72.34 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++|+|+||+||||++..++..+...+..+..++++........+.. ...+................+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999888876667888888765443322111 11111112223344445555666655
Q ss_pred cCCcEEEEeCCCCCcchH
Q 011010 182 ENCDLIIVDTSGRHKQEA 199 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~ 199 (495)
..+++++||.++......
T Consensus 77 ~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 77 LKPDVLILDEITSLLDAE 94 (148)
T ss_pred cCCCEEEEECCcccCCHH
Confidence 567999999999865543
No 336
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.40 E-value=7.2e-07 Score=87.58 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+|||||+++..+. +..- .+.|.|...+.. .. .+.+ . .
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~------~~~F----~~~y~pTi~~~~---~~--~i~~----~----------------~ 58 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLA------KDCY----PETYVPTVFENY---TA--GLET----E----------------E 58 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHh------cCCC----CCCcCCceeeee---EE--EEEE----C----------------C
Confidence 468999999999999999987 2110 112222110000 00 0100 0 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~~ 254 (495)
..+.+.|.||||..... .+.. .....+|.+++|.|.+........ ...+. ... +..+|.||+|+.
T Consensus 59 ~~v~l~iwDTaG~e~~~-----~~~~--~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~-piilVgNK~DL~ 130 (232)
T cd04174 59 QRVELSLWDTSGSPYYD-----NVRP--LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPST-RILLIGCKTDLR 130 (232)
T ss_pred EEEEEEEEeCCCchhhH-----HHHH--HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCC-CEEEEEECcccc
Confidence 25678999999963211 1211 233489999999999754322211 12222 223 358999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...+...........+|. ...|+.+..-....+-..+|++.|.++++.+++.+...+
T Consensus 131 ~~~~~~~~l~~~~~~~Vs-~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 131 TDLSTLMELSNQKQAPIS-YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred cccchhhhhccccCCcCC-HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 432221111100001111 001222211111112345899999833999998876553
No 337
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.40 E-value=1.4e-06 Score=80.48 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc----hhHHHHHh-------hhhhcCcceecc--------C-CCCChH
Q 011010 110 QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA----GAFDQLKQ-------NATKAKIPFYGS--------Y-TESDPV 169 (495)
Q Consensus 110 ~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~----~a~dqL~~-------~a~~~~i~~~~~--------~-~~~dp~ 169 (495)
+|+||||++..|+.+|+++|++|.++.+..... ...+.+.. +.....+.+... . ......
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 86 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDWDEVNPYAFALPLSPHIAADQEGRPIDL 86 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCchhccCCeeeCCCCChHHHHHHhCCCCCH
Confidence 599999999999999999999999973221111 00111111 111100100000 0 000001
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc-cCCceEE
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAV 246 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~~~~v 246 (495)
....+.++.+ .++||++|||+||.....-....-..++.... .+.+++|+++..+. +.......+++ ..++.++
T Consensus 87 ~~i~~~~~~l-~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~--~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gv 163 (166)
T TIGR00347 87 EELSKHLRTL-EQKYDFVLVEGAGGLCVPITEEYTTADLIKLL--QLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGV 163 (166)
T ss_pred HHHHHHHHHH-HhcCCEEEEEcCCccccCCCCCCcHHHHHHHh--CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEE
Confidence 1123344444 36899999999985331100000012233333 34588899886543 12223334443 4677889
Q ss_pred EEe
Q 011010 247 IVT 249 (495)
Q Consensus 247 IlT 249 (495)
|+|
T Consensus 164 v~N 166 (166)
T TIGR00347 164 ILN 166 (166)
T ss_pred EeC
Confidence 987
No 338
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.39 E-value=1.5e-06 Score=81.92 Aligned_cols=120 Identities=15% Similarity=0.069 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHH----HHhcc--CCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ----AFKQS--VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~----~f~~~--~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||+|.... ..+.. .....+|.+++|.|.+.......... .+.+. ..+..+|.||+|+...
T Consensus 52 ~~~l~iwDtaG~e~~-----~~~~~--~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 124 (182)
T cd04172 52 RIELSLWDTSGSPYY-----DNVRP--LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124 (182)
T ss_pred EEEEEEEECCCchhh-----Hhhhh--hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC
Confidence 467889999996321 11211 22348899999999875432222211 22211 1245899999998543
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.+...........||. ...|+.+..-....+-..+|++.|.|++..+++.+..
T Consensus 125 ~~~~~~~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 125 LTTLVELSNHRQTPVS-YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hhhHHHHHhcCCCCCC-HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 2221111111111221 1112222111111234568999999769888887765
No 339
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.38 E-value=1e-06 Score=82.76 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHH----HH---hccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ----AF---KQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~----~f---~~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+.. .....+|.+++|.|.+....-.+... .+ .... +..+|.||+|+..
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~--~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~-~iilVgnK~DL~~ 119 (178)
T cd04131 48 RIELSLWDTSGSPYYD-----NVRP--LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNT-KVLLVGCKTDLRT 119 (178)
T ss_pred EEEEEEEECCCchhhh-----hcch--hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCC-CEEEEEEChhhhc
Confidence 4678899999963221 1211 12348899999999875332222111 12 2223 3588999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
..+...........||.. ..|+.+..-....+-..+|+..|.+++..++..+..
T Consensus 120 ~~~~~~~~~~~~~~~v~~-~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 120 DLSTLMELSHQRQAPVSY-EQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred ChhHHHHHHhcCCCCCCH-HHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 322111110001112211 112222111111133568999998449998887765
No 340
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.36 E-value=4e-06 Score=86.96 Aligned_cols=120 Identities=17% Similarity=0.203 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc---CcceeccCC----CCChHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA---KIPFYGSYT----ESDPVRIAVE 174 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~---~i~~~~~~~----~~dp~~ia~~ 174 (495)
.+.+|.|.-||||||++++|... .+|.+++++-.|....+--..|-...... .-+++.... ..-. .-...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~-~dl~~ 81 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVA-DDFIP 81 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCc-HHHHH
Confidence 37899999999999999999863 35899999999876544333332211100 001111100 0101 11233
Q ss_pred HHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHH--HHHHHhcCCCEEEEEeeCCc
Q 011010 175 GVETFK--KENCDLIIVDTSGRHKQEAALFEEMR--QVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 175 ~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~--~i~~~i~~~d~vllVvDa~~ 226 (495)
++..+. ...+|+|+|.|.|..... .+...+. .+...+ .-|.++.|||+..
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~-~i~~~~~~~~l~~~~-~l~~vvtvVDa~~ 135 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPK-PLVQAFQWPEIRSRV-TVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHH-HHHHHhcCccccceE-EeeeEEEEEECch
Confidence 444432 347999999999997544 3333331 122223 5577999999974
No 341
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.35 E-value=1.7e-06 Score=81.98 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||..... .+.. .....+|.+++|.|.+....-... ...+. ...| ..+|.||.|+..
T Consensus 50 ~~~l~i~Dt~G~e~~~-----~l~~--~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 121 (191)
T cd01875 50 TVSLNLWDTAGQEEYD-----RLRT--LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEECCCchhhh-----hhhh--hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhc
Confidence 4678899999973221 1211 123478999999998753321111 11111 2234 589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... ..+.....+........|+.+..-....+-..+|+..|.| +..+++.+.+.+
T Consensus 122 ~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~-v~e~f~~l~~~~ 176 (191)
T cd01875 122 DAD-TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG-VKEVFAEAVRAV 176 (191)
T ss_pred Chh-hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111000000111111100112345689999999 999999887655
No 342
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.33 E-value=3.4e-06 Score=83.96 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHH------H-----HHhhhhh-cCcceeccCCCCChH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------Q-----LKQNATK-AKIPFYGSYTESDPV 169 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~d------q-----L~~~a~~-~~i~~~~~~~~~dp~ 169 (495)
.+-.|.|.-|||||||+|+++ ..++|+|||++-...--..+++ | ...|-.. .|+- ++....+.+
T Consensus 58 PvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGCl--CCtVk~~gv 133 (391)
T KOG2743|consen 58 PVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCL--CCTVKDNGV 133 (391)
T ss_pred ceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeE--EEEecchHH
Confidence 477889999999999999997 4467999999866432212221 1 1122222 2322 222233445
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHH---HHHHHHhcCCCEEEEEeeCCccccHHH-------HHHHHhc
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATVNPDLVIFVMDSSIGQAAFD-------QAQAFKQ 239 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el---~~i~~~i~~~d~vllVvDa~~g~~~~~-------~~~~f~~ 239 (495)
....+.++ +...+|+|++.|.|...+.. +..-. ..+.+.+ .-|.++-|+||.......+ .-.++.+
T Consensus 134 raie~lvq--kkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdV-kLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 134 RAIENLVQ--KKGKFDHILLETTGLANPAP-IASMFWLDDELGSDV-KLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred HHHHHHHh--cCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCce-eeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 55555554 55689999999999865432 22211 2233444 6788999999974321111 1123333
Q ss_pred cCCceEEEEeCccCCCC
Q 011010 240 SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 240 ~~~~~~vIlTK~D~~~~ 256 (495)
-.-.+.+|+||.|+...
T Consensus 210 iA~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 210 IALADRIIMNKTDLVSE 226 (391)
T ss_pred HhhhheeeeccccccCH
Confidence 22236789999999765
No 343
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=98.32 E-value=9.5e-06 Score=80.26 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc------------chhHHHHHhhhh--h-----------cC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR------------AGAFDQLKQNAT--K-----------AK 156 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R------------~~a~dqL~~~a~--~-----------~~ 156 (495)
+.|+|.|.-|.||||++.+|+..|++.|+||+.|-|||-. +...+.++.... . .+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 3699999999999999999999999999999999999832 223344443322 1 12
Q ss_pred cceeccCCCCCh--------HHHHHHHHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 157 IPFYGSYTESDP--------VRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 157 i~~~~~~~~~dp--------~~ia~~~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
|.+.... ...| +..+.+.+++.. ..++|+|+.|.-|---.-...+. +.+ ..++++++|.....
T Consensus 81 i~CvEsG-GPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamP----ir~--g~a~evyIVtSge~ 153 (273)
T PF00142_consen 81 ILCVESG-GPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMP----IRE--GYAQEVYIVTSGEF 153 (273)
T ss_dssp EEEEE----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHH----HHT--TS-SEEEEEEBSSH
T ss_pred ceeeccC-CCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehh----hhh--ccCCEEEEEecCcH
Confidence 2211111 1122 233444444432 24689999998773211100000 111 16788888887642
Q ss_pred --cccHHHHHH---HHhcc--CCceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 227 --GQAAFDQAQ---AFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 227 --g~~~~~~~~---~f~~~--~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
-..+-++.+ .|... .++.++|+|.-+.......+-.+...++.||.
T Consensus 154 mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~ 206 (273)
T PF00142_consen 154 MSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPII 206 (273)
T ss_dssp HHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEE
Confidence 123333443 34332 35789999976544333444556677888765
No 344
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.30 E-value=9.3e-07 Score=83.24 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=57.8
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHh---ccCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
..+.++||||...... +... ....+|.+++|.|........+ ....+. ...+ ..+|.||+|....
T Consensus 49 ~~l~i~Dt~g~~~~~~-----~~~~--~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~ 120 (187)
T cd04129 49 VQLALWDTAGQEEYER-----LRPL--SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQD 120 (187)
T ss_pred EEEEEEECCCChhccc-----cchh--hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhC
Confidence 4578999999642211 1111 1237899999998764322111 112221 2234 5899999997432
Q ss_pred ccchhHHHHhcCCCeEEec--cCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~--~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... .. ..+-.++. .++.+..-....+.+.+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 172 (187)
T cd04129 121 AVAK-EE----YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG-VDDVFEAATRAA 172 (187)
T ss_pred cccc-cc----cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 1100 00 00000000 001110000112345689999999 999999987643
No 345
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.30 E-value=9.3e-06 Score=80.20 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=49.7
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-cccHHHHHHHHhccC-CceEEEEeCccCCCCccc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI-GQAAFDQAQAFKQSV-SVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~-g~~~~~~~~~f~~~~-~~~~vIlTK~D~~~~~g~ 259 (495)
+..|++|||||.--.-. +.+++..+|.+++|..++. |..+...+...-+.. -+.++|+||.+.-.. .
T Consensus 162 E~~~~~IIDsaaG~gCp---------Vi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ 230 (284)
T COG1149 162 ELADLLIIDSAAGTGCP---------VIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--E 230 (284)
T ss_pred hhcceeEEecCCCCCCh---------HHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--H
Confidence 34799999996543332 3344559999999999984 333332222222222 236999999954222 4
Q ss_pred hhHHHHhcCCCeEE
Q 011010 260 ALSAVAATKSPVIF 273 (495)
Q Consensus 260 ~ls~~~~~~~PI~f 273 (495)
..+.....+.||..
T Consensus 231 ie~~~~e~gi~il~ 244 (284)
T COG1149 231 IEEYCEEEGIPILG 244 (284)
T ss_pred HHHHHHHcCCCeeE
Confidence 56667777777753
No 346
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.8e-05 Score=84.44 Aligned_cols=160 Identities=21% Similarity=0.193 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
..+|.+|-|.|.---|||||+-+|- +-.|+-..+ |. .|++ |--|.+.-
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lR------ks~VAA~E~-----GG-------ITQh-IGAF~V~~------------- 197 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALR------KSSVAAGEA-----GG-------ITQH-IGAFTVTL------------- 197 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHh------hCceehhhc-----CC-------ccce-eceEEEec-------------
Confidence 3467799999999999999999987 555553332 11 1111 11122111
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc---ccHHHHHHHHhccCCceEEEEeCccCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g---~~~~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
..+-.+.|.||||... +..|+. +.+. -.|.+++||.+-.| |....+..+-...+| ..|.+||+|..
T Consensus 198 ---p~G~~iTFLDTPGHaA-----F~aMRa-RGA~-vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp 266 (683)
T KOG1145|consen 198 ---PSGKSITFLDTPGHAA-----FSAMRA-RGAN-VTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKP 266 (683)
T ss_pred ---CCCCEEEEecCCcHHH-----HHHHHh-ccCc-cccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCC
Confidence 0266789999999742 334432 2222 57999999988755 333222222222345 48999999964
Q ss_pred CC-ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 255 AK-GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 255 ~~-~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
.. ...+..-+...|+++ +++.---+..++|+++|.| +..|.|.+.-
T Consensus 267 ~a~pekv~~eL~~~gi~~---------E~~GGdVQvipiSAl~g~n-l~~L~eaill 313 (683)
T KOG1145|consen 267 GANPEKVKRELLSQGIVV---------EDLGGDVQVIPISALTGEN-LDLLEEAILL 313 (683)
T ss_pred CCCHHHHHHHHHHcCccH---------HHcCCceeEEEeecccCCC-hHHHHHHHHH
Confidence 21 122222333344443 3332223457899999999 8888887743
No 347
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.29 E-value=1.2e-05 Score=77.39 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=56.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHH---HhccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQA---FKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~---f~~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.+.||+|..... .+. ......++.+++|+|.+........ ... ..+..+ ..+|.||+|...+
T Consensus 57 ~i~i~~~Dt~g~~~~~-----~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 57 PICFNVWDTAGQEKFG-----GLR--DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDR 128 (215)
T ss_pred EEEEEEEECCCchhhh-----hhh--HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccc
Confidence 4677899999963221 111 1222377899999998754322111 111 122344 4678999997533
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
... ..... +... .......+|+..|.| ++..+.++...+
T Consensus 129 ~~~-~~~~~--------------~~~~-~~~~~~e~Sa~~~~~-v~~~f~~ia~~l 167 (215)
T PTZ00132 129 QVK-ARQIT--------------FHRK-KNLQYYDISAKSNYN-FEKPFLWLARRL 167 (215)
T ss_pred cCC-HHHHH--------------HHHH-cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 110 01100 0000 011224678899988 888777776654
No 348
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.29 E-value=4.5e-06 Score=94.75 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=43.0
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHH-hccCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAF-KQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f-~~~~~~~~vIlTK~D~~ 254 (495)
.++++.|+||||...... + +..++..+|.+++|+|+..+.. .....+.. ....++ .+++||+|..
T Consensus 84 ~~~~i~liDTPG~~~f~~----~---~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~ 151 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGG----D---VTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP-VLFINKVDRL 151 (720)
T ss_pred CceEEEEEeCCCccccHH----H---HHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE-EEEEEChhcc
Confidence 478999999999864321 1 2334447899999999987532 22333322 333454 7999999974
No 349
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.27 E-value=1.5e-06 Score=87.35 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc----ch--hHHHHHhhhhhcCc----ceeccCCCCChHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR----AG--AFDQLKQNATKAKI----PFYGSYTESDPVRI 171 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R----~~--a~dqL~~~a~~~~i----~~~~~~~~~dp~~i 171 (495)
++|.|+|.+||||||++.+|+..|+++| +|++|..|+.. ++ .....+..+...-+ .+.......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~~v~~~s~~~~~~~~~~~~---- 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGADVVYGLTDGEWVASGRDRS---- 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCcEEEEecCCeEEEEecCCC----
Confidence 4799999999999999999999999999 89999999743 33 22222222221000 0110011111
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCc
Q 011010 172 AVEGVETFKKENCDLIIVDTSGRHK 196 (495)
Q Consensus 172 a~~~l~~~~~~~~dvviIDTaG~~~ 196 (495)
..+.+..+. .++|+||||+.....
T Consensus 77 l~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 77 LDDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred HHHHHHhhC-cCCCEEEEECCCCCC
Confidence 223344443 479999999988754
No 350
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.27 E-value=4e-06 Score=80.40 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH---HHHHh---ccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ---AQAFK---QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~---~~~f~---~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||||.... ..+. ......+|.+++|+|.+........ ...+. ..++ ..+|.||+|...+
T Consensus 43 ~~~l~iwDt~G~e~~-----~~l~--~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~ 114 (200)
T smart00176 43 PIRFNVWDTAGQEKF-----GGLR--DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDR 114 (200)
T ss_pred EEEEEEEECCCchhh-----hhhh--HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 467889999997321 1121 1233478999999999865432211 11122 2234 5899999997532
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.-. ..... +.. ..-.+...+|+..|.| +..+++++...+
T Consensus 115 ~v~-~~~~~--------------~~~-~~~~~~~e~SAk~~~~-v~~~F~~l~~~i 153 (200)
T smart00176 115 KVK-AKSIT--------------FHR-KKNLQYYDISAKSNYN-FEKPFLWLARKL 153 (200)
T ss_pred cCC-HHHHH--------------HHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 100 00000 000 0011235689999999 999999987654
No 351
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.26 E-value=1.2e-05 Score=72.43 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+++|+|+||+||||++..++..+..+|.+|.+++.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 3789999999999999999999998999999999986544
No 352
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.25 E-value=9.3e-06 Score=75.76 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=72.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC----CcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT----FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~----~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l 176 (495)
...|+++|+.|+||||++.+++ -+....++.|. ++. ++.+| ...+ |+...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k~------kr~tT-va~D-~g~~~------------ 63 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGKG------KRPTT-VAMD-FGSIE------------ 63 (187)
T ss_pred ceeEEEEcccccchhhHHHHhh------ccccceeecccccccccc------cccee-Eeec-ccceE------------
Confidence 3469999999999999999999 55554454432 211 11111 1111 11111
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccC-CceEEEEeCccC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSV-SVGAVIVTKMDG 253 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~-~~~~vIlTK~D~ 253 (495)
..+++-+-|+||||....+ .|-++ ..+.++-.+++||++.+++- ......+.... .+..|.+||.|+
T Consensus 64 ---~~~~~~v~LfgtPGq~RF~-----fm~~~--l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL 133 (187)
T COG2229 64 ---LDEDTGVHLFGTPGQERFK-----FMWEI--LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDL 133 (187)
T ss_pred ---EcCcceEEEecCCCcHHHH-----HHHHH--HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeecccc
Confidence 0135778999999974332 22111 22367889999999977653 44455554443 346888999998
Q ss_pred CCC
Q 011010 254 HAK 256 (495)
Q Consensus 254 ~~~ 256 (495)
...
T Consensus 134 ~~a 136 (187)
T COG2229 134 FDA 136 (187)
T ss_pred CCC
Confidence 544
No 353
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.25 E-value=7.9e-06 Score=92.93 Aligned_cols=141 Identities=17% Similarity=0.164 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE--EEeccCCcchhHHHHHhhhhhcC
Q 011010 79 IFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAK 156 (495)
Q Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa--IVs~D~~R~~a~dqL~~~a~~~~ 156 (495)
..+.+.+++... .+.+.|+++|..++|||||+.+|......-..++. -...|.. + .++-+..+-...
T Consensus 6 ~~~~~~~~~~~~--------~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~-~--~E~~rgiTi~~~ 74 (731)
T PRK07560 6 MVEKILELMKNP--------EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFD-E--EEQARGITIKAA 74 (731)
T ss_pred HHHHHHHHhhch--------hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCcc-H--HHHHhhhhhhcc
Confidence 345666676531 12357999999999999999999854321000000 0001211 0 111111111111
Q ss_pred -cceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHH
Q 011010 157 -IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQ 233 (495)
Q Consensus 157 -i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~ 233 (495)
++++..+. ..++.+.||||||.+... .+ +..++..+|.+++|+|+..|.. ....
T Consensus 75 ~~~~~~~~~----------------~~~~~i~liDtPG~~df~----~~---~~~~l~~~D~avlVvda~~g~~~~t~~~ 131 (731)
T PRK07560 75 NVSMVHEYE----------------GKEYLINLIDTPGHVDFG----GD---VTRAMRAVDGAIVVVDAVEGVMPQTETV 131 (731)
T ss_pred ceEEEEEec----------------CCcEEEEEEcCCCccChH----HH---HHHHHHhcCEEEEEEECCCCCCccHHHH
Confidence 11111001 136778999999986532 22 2333346799999999987633 2222
Q ss_pred HHH-HhccCCceEEEEeCccCC
Q 011010 234 AQA-FKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 234 ~~~-f~~~~~~~~vIlTK~D~~ 254 (495)
... .....++ .+++||+|..
T Consensus 132 ~~~~~~~~~~~-iv~iNK~D~~ 152 (731)
T PRK07560 132 LRQALRERVKP-VLFINKVDRL 152 (731)
T ss_pred HHHHHHcCCCe-EEEEECchhh
Confidence 332 2333454 8999999974
No 354
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.23 E-value=1.6e-06 Score=81.32 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..++++|.|||||||++|.|. |.+++-++. .+.+|+....+..
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~------~~~~~~~~~-----------~pg~T~~~~~~~~------------------- 160 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLK------RSRACNVGA-----------TPGVTKSMQEVHL------------------- 160 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CcccceecC-----------CCCeEcceEEEEe-------------------
Confidence 3579999999999999999999 888877776 5555554322111
Q ss_pred hcCCcEEEEeCCCC
Q 011010 181 KENCDLIIVDTSGR 194 (495)
Q Consensus 181 ~~~~dvviIDTaG~ 194 (495)
+..+.++||||.
T Consensus 161 --~~~~~l~DtPGi 172 (172)
T cd04178 161 --DKKVKLLDSPGI 172 (172)
T ss_pred --CCCEEEEECcCC
Confidence 236789999995
No 355
>PTZ00416 elongation factor 2; Provisional
Probab=98.23 E-value=2.5e-06 Score=98.14 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=42.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
++.+.||||||.+. +..+ +..++..+|.+++|+|+..|... ....+.......+..+++||+|..
T Consensus 91 ~~~i~liDtPG~~~----f~~~---~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVD----FSSE---VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHh----HHHH---HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 56789999999853 2233 34444578999999999876332 223333332222458999999986
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.21 E-value=1.3e-05 Score=73.58 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE-EEeccCCcchh--------H-----HHHH-hhhhhcCcceeccCCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGA--------F-----DQLK-QNATKAKIPFYGSYTE 165 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa-IVs~D~~R~~a--------~-----dqL~-~~a~~~~i~~~~~~~~ 165 (495)
+..|.+.|+|||||||++.+++..|.++|++|. +++....+-|- . .+|. ....+..+.-|.+. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~-v 83 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN-V 83 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee-H
Confidence 346999999999999999999999999999886 34433211100 0 0000 00011112112211 1
Q ss_pred CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcc
Q 011010 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 166 ~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~ 197 (495)
.+...++..+++.+.. ..|++|||--|-...
T Consensus 84 ~~le~i~~~al~rA~~-~aDvIIIDEIGpMEl 114 (179)
T COG1618 84 EGLEEIAIPALRRALE-EADVIIIDEIGPMEL 114 (179)
T ss_pred HHHHHHhHHHHHHHhh-cCCEEEEecccchhh
Confidence 1223356667776653 479999999886543
No 357
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.21 E-value=1.9e-06 Score=74.43 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa 122 (495)
.|+++|.+||||||+++.|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 38999999999999999999
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.21 E-value=6.6e-06 Score=80.34 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--ceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~--kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
+-.+|+++|++++||||++|.|. |. ...+.+. ...+|+ +|-.+......
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~------~~~~~f~~~~~-----------~~~~T~-gi~~~~~~~~~----------- 56 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLF------GTLSGFDVMDT-----------SQQTTK-GIWMWSVPFKL----------- 56 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh------CCCCCeEecCC-----------CCCCcc-ceEEEeccccC-----------
Confidence 34689999999999999999999 76 3443333 233443 33222211100
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHH-HHH--HHHHHHHhcCCCEEEEEeeCCccccHHHHH
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAAL-FEE--MRQVSEATVNPDLVIFVMDSSIGQAAFDQA 234 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l-~~e--l~~i~~~i~~~d~vllVvDa~~g~~~~~~~ 234 (495)
..+..++++||||....+... ... +..+ ..+ -+|.+++.++......+.+..
T Consensus 57 ---~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l-~~l-lss~~i~n~~~~~~~~~~~~l 111 (224)
T cd01851 57 ---GKEHAVLLLDTEGTDGRERGEFEDDARLFAL-ATL-LSSVLIYNSWETILGDDLAAL 111 (224)
T ss_pred ---CCcceEEEEecCCcCccccCchhhhhHHHHH-HHH-HhCEEEEeccCcccHHHHHHH
Confidence 135789999999986554322 122 2222 222 478899999987655544433
No 359
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.19 E-value=2.7e-05 Score=83.87 Aligned_cols=187 Identities=16% Similarity=0.053 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc
Q 011010 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (495)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~ 155 (495)
+.+++.|.+-++-.........+++..++|+|.. ||||||++..|+.+|+++ |....+.+ ..+| +.+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D~id-~~p~~~~~ 286 (476)
T PRK06278 214 KILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---DVRD-IVPSLYLL 286 (476)
T ss_pred HHHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---Chhh-cCCcceec
Confidence 4455555555553322222333446678899887 999999999999999975 44443311 1111 00100000
Q ss_pred Ccceec---cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcch--HHHH-HHHHHHHHHhcCCCEEEEEeeCCccc-
Q 011010 156 KIPFYG---SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALF-EEMRQVSEATVNPDLVIFVMDSSIGQ- 228 (495)
Q Consensus 156 ~i~~~~---~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~--~~l~-~el~~i~~~i~~~d~vllVvDa~~g~- 228 (495)
..+..+ ...+.++.....+.+..+...++|++||+-+|-.... .... ....++...+ ++ -+++|+|+..+.
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l-~~-PVILV~~~~~g~i 364 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL-GF-PVYIVSSCSKSGI 364 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHh-CC-CEEEEEcCCCChH
Confidence 000000 0101122112223344443347899999998632211 0000 0112344455 33 488999987653
Q ss_pred -cHHHHH---HHH--hccCCceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 229 -AAFDQA---QAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 229 -~~~~~~---~~f--~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
.+...+ ..| ...+++.++|+|++...........++..++.||.
T Consensus 365 ~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVL 414 (476)
T PRK06278 365 EGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLI 414 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEE
Confidence 233332 233 23467889999999843222333445555788875
No 360
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.19 E-value=6.5e-06 Score=78.90 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||++++|....-..++.+.++..++-.. .....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~----------------- 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT-----------------IEPYR----------------- 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE-----------------EEeCC-----------------
Confidence 46999999999999999999965555555555444422100 00000
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc---CCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...++.++||+|...... + .......++.+++|.|.+......+. ...+... .-+..+|.||+|+.
T Consensus 52 ~~~~~~~~Dt~gq~~~~~-----~--~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRS-----L--RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred CEEEEEeecCCCHHHHHH-----H--HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 135688999999743221 1 11222388999999998753222221 1122221 12358899999986
Q ss_pred CC
Q 011010 255 AK 256 (495)
Q Consensus 255 ~~ 256 (495)
..
T Consensus 125 ~~ 126 (219)
T COG1100 125 DE 126 (219)
T ss_pred cc
Confidence 55
No 361
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.16 E-value=7.8e-06 Score=74.24 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.+... .. .+.|.+ ..+.+++......+ ..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~----~~------~~~~~~-----------t~~~~~~~~~~~~~-------------~~ 46 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING----EF------PENYIP-----------TIGIDSYSKEVSID-------------GK 46 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS----ST------TSSSET-----------TSSEEEEEEEEEET-------------TE
T ss_pred CEEEECCCCCCHHHHHHHHHhh----cc------cccccc-----------cccccccccccccc-------------cc
Confidence 3899999999999999998721 11 111111 01111111100000 13
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHH---hccCCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAF---KQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f---~~~~~~~~vIlTK~D~~~~ 256 (495)
.+.+.|.||+|...... +.. .....+|.+++|.|.+..... ......+ .....+..+|.||.|....
T Consensus 47 ~~~l~i~D~~g~~~~~~-----~~~--~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDS-----LRD--IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp EEEEEEEEETTSGGGHH-----HHH--HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG
T ss_pred ccccccccccccccccc-----ccc--ccccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 56789999999753321 111 123378999999998753221 1122222 2212356888899997642
Q ss_pred ccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
...-.... +.+ ..+. .+-..+|+..+.| +..++..+.+.
T Consensus 120 ~~v~~~~~-------------~~~~~~~~--~~~~e~Sa~~~~~-v~~~f~~~i~~ 159 (162)
T PF00071_consen 120 REVSVEEA-------------QEFAKELG--VPYFEVSAKNGEN-VKEIFQELIRK 159 (162)
T ss_dssp SSSCHHHH-------------HHHHHHTT--SEEEEEBTTTTTT-HHHHHHHHHHH
T ss_pred ccchhhHH-------------HHHHHHhC--CEEEEEECCCCCC-HHHHHHHHHHH
Confidence 11100000 111 1122 3445678888888 88888777554
No 362
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.16 E-value=4.7e-06 Score=88.67 Aligned_cols=102 Identities=16% Similarity=0.291 Sum_probs=70.3
Q ss_pred HHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCC-CCCCC----CCC-CCCeEEEEEc
Q 011010 35 ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG-KPSFT----PKK-GKPSVIMFVG 108 (495)
Q Consensus 35 i~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~-~~~~~----~~~-~~~~vI~ivG 108 (495)
|.+.|+++||.++++..+.++++..+..+.. .......+...|.+.+.+.++.. ...+. +.. .+|.+|+++|
T Consensus 185 LaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~--~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p~vil~~G 262 (475)
T PRK12337 185 LAQSLMAAGLAPDVARRLARETERDLRRSGD--RVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRPLHVLIGG 262 (475)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCCeEEEEEC
Confidence 8899999999999999999999887532111 11223445666767666655432 11111 122 3588999999
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 109 ~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++|+||||++.+||.++ |. ..++++|.+|-
T Consensus 263 ~~G~GKSt~a~~LA~~l---g~-~~ii~tD~iR~ 292 (475)
T PRK12337 263 VSGVGKSVLASALAYRL---GI-TRIVSTDAVRE 292 (475)
T ss_pred CCCCCHHHHHHHHHHHc---CC-cEEeehhHHHH
Confidence 99999999999999654 22 33889998664
No 363
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.15 E-value=4.3e-05 Score=82.29 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=86.4
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccC-CCCChHHHHHHHHHHHh
Q 011010 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY-TESDPVRIAVEGVETFK 180 (495)
Q Consensus 103 vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~-~~~dp~~ia~~~l~~~~ 180 (495)
.++|+|. +||||||++..|+.+|+++|++|....+++-...+. .+... .+.+..... ...+ .+.+.+.+..+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~-~~~~~---~g~~~~~ld~~~~~-~~~v~~~~~~~- 78 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA-YHTAA---TGRPSRNLDSWMMG-EELVRALFARA- 78 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH-HHHHH---hCCCcccCCceeCC-HHHHHHHHHHh-
Confidence 5788876 499999999999999999999999988865322211 11111 111111100 0011 12334444443
Q ss_pred hcCCcEEEEeCCCCCcc------hHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHH---HHHhccCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQ------EAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQA---QAFKQSVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~------~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~---~~f~~~~~~~~vIlTK 250 (495)
..++|++||+-+|-... +.... .++.+.+ .+ .+++|+|+.... ...... ..+...+++.++|+||
T Consensus 79 ~~~~D~vlVEGagGl~~g~~~~~~~~s~---adiA~~l-~~-pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~ 153 (451)
T PRK01077 79 AQGADIAVIEGVMGLFDGAGSDPDEGST---ADIAKLL-GA-PVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNR 153 (451)
T ss_pred cccCCEEEEECCCccccCCccCCCCCCH---HHHHHHh-CC-CEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 34799999998743211 11111 2344444 33 478888876422 221222 3343456788999999
Q ss_pred ccCCCCccchhHHHHhcCCCe
Q 011010 251 MDGHAKGGGALSAVAATKSPV 271 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI 271 (495)
+............+..++.|+
T Consensus 154 v~~~~~~~~l~~~l~~~gipv 174 (451)
T PRK01077 154 VGSERHYQLLREALERCGIPV 174 (451)
T ss_pred CCChhHHHHHHHHHHhcCCCE
Confidence 964322112233444467775
No 364
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.7e-05 Score=73.66 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc------------chhHHHHHhhhh-----h--------cC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR------------AGAFDQLKQNAT-----K--------AK 156 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R------------~~a~dqL~~~a~-----~--------~~ 156 (495)
+.|+|.|..|-||||+..++++.|++.|++|++|-|||-. |...+.|+.... . .+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 3699999999999999999999999999999999999832 444555555332 0 11
Q ss_pred cceecc-------CCCCChHHHHHHHHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc-
Q 011010 157 IPFYGS-------YTESDPVRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI- 226 (495)
Q Consensus 157 i~~~~~-------~~~~dp~~ia~~~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~- 226 (495)
|.+..+ .....-+-.+.+.++++. .+..|+||.|..|---.--..+. +.+ ..+|++++|.+.-.
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmP----iRe--g~AdeiyIVtSge~M 155 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMP----IRE--GYADEIYIVTSGEMM 155 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeee----hhc--ccCcEEEEEecCchH
Confidence 111110 000111333444444431 12469999999884211100000 111 16899988887642
Q ss_pred -cccHHHHHH---HHhcc--CCceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 227 -GQAAFDQAQ---AFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 227 -g~~~~~~~~---~f~~~--~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
-..+-++++ .|... +.+.++|.|---.+....-+-.+....+.|+.
T Consensus 156 alYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li 207 (278)
T COG1348 156 ALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLI 207 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceE
Confidence 223334444 34332 34789999865433222222334445565543
No 365
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.14 E-value=5.3e-06 Score=72.77 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+.+++||+.|+||||++++|- |..+.-- +.+ -|+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~------G~~~lyk-------------KTQ----Ave~---------------------- 36 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY------GNDTLYK-------------KTQ----AVEF---------------------- 36 (148)
T ss_pred ceeEEecccccCchhHHHHhh------cchhhhc-------------ccc----eeec----------------------
Confidence 359999999999999999998 5432210 000 1111
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCcc-
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g- 258 (495)
.|--.|||||-.-....+...+ .....++|.+++|-.+..+.... .....|. ...+-|+||+|......
T Consensus 37 --~d~~~IDTPGEy~~~~~~Y~aL---~tt~~dadvi~~v~~and~~s~f~p~f~~~~~---k~vIgvVTK~DLaed~dI 108 (148)
T COG4917 37 --NDKGDIDTPGEYFEHPRWYHAL---ITTLQDADVIIYVHAANDPESRFPPGFLDIGV---KKVIGVVTKADLAEDADI 108 (148)
T ss_pred --cCccccCCchhhhhhhHHHHHH---HHHhhccceeeeeecccCccccCCcccccccc---cceEEEEecccccchHhH
Confidence 1224689999654443343333 22233788888888776543221 1122222 22577899999874321
Q ss_pred -chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
....++...| ..|.+.+|+.-..| ++.|++.+...
T Consensus 109 ~~~~~~L~eaG-----------------a~~IF~~s~~d~~g-v~~l~~~L~~~ 144 (148)
T COG4917 109 SLVKRWLREAG-----------------AEPIFETSAVDNQG-VEELVDYLASL 144 (148)
T ss_pred HHHHHHHHHcC-----------------CcceEEEeccCccc-HHHHHHHHHhh
Confidence 1122232222 23455667777778 88888777554
No 366
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.14 E-value=3e-05 Score=74.23 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a 144 (495)
..++.|+|+||+||||++..++....+.|.+|+.++.+-+.+.-
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~r 55 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPER 55 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHH
Confidence 45899999999999999999999998889999999997655433
No 367
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.13 E-value=4.2e-05 Score=74.28 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL 148 (495)
..++.|+|+||+||||++..++....+.|.+|..++++.+.+.-+.++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~ 70 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQI 70 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH
Confidence 358999999999999999999999988899999999985544434443
No 368
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.11 E-value=5.6e-05 Score=75.41 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i 157 (495)
..++.|.|+||+||||++..++...+++|.+|+.++.+.-..--.+++...+...+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 457999999999999999999998888899999999873111112345444444443
No 369
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.11 E-value=2e-05 Score=91.00 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHH-HhccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQA-FKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~-f~~~~~~~~vIlTK~D~~ 254 (495)
++-+-||||||.. ++..++ ..++..+|.+++|+|+..|-.. ....+. .....+ ..+++||+|..
T Consensus 97 ~~~inliDtPGh~----dF~~e~---~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHV----DFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHH----HHHHHH---HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCccc
Confidence 5667899999973 333333 3333478999999999876432 222222 223344 58999999986
No 370
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.7e-05 Score=84.84 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++.+|.+.|.---|||||+-++= +-+|+--.+ |.+.| ..+. |.......
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR------~t~Va~~Ea-----GGITQ------hIGA--~~v~~~~~------------ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR------KTNVAAGEA-----GGITQ------HIGA--YQVPLDVI------------ 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh------cCccccccC-----Cceee------Eeee--EEEEeccC------------
Confidence 56699999999999999999986 444442222 11111 1111 11111000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhcc-CCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQS-VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~-~~~~~vIlTK~D~~~~ 256 (495)
...-+.|+||||... +..|+. .-+ .-+|.++||||+..|-.+ .+.....+.. +| ..|.+||+|....
T Consensus 53 --~~~~itFiDTPGHeA-----Ft~mRa-RGa-~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~ 122 (509)
T COG0532 53 --KIPGITFIDTPGHEA-----FTAMRA-RGA-SVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEA 122 (509)
T ss_pred --CCceEEEEcCCcHHH-----HHHHHh-cCC-ccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCC
Confidence 135689999999743 223322 111 257999999999866322 2222222222 44 5999999998633
Q ss_pred c-cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 257 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 257 ~-g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
. ......+...|+.. +.+..-....++|+++|.| +.+|++.+.-
T Consensus 123 np~~v~~el~~~gl~~---------E~~gg~v~~VpvSA~tg~G-i~eLL~~ill 167 (509)
T COG0532 123 NPDKVKQELQEYGLVP---------EEWGGDVIFVPVSAKTGEG-IDELLELILL 167 (509)
T ss_pred CHHHHHHHHHHcCCCH---------hhcCCceEEEEeeccCCCC-HHHHHHHHHH
Confidence 2 11122222222211 1111113456799999999 9999988754
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=4.6e-06 Score=78.83 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAY 123 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~ 123 (495)
..++|+|.|||||||++|.|..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999993
No 372
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.08 E-value=1e-05 Score=81.89 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=72.6
Q ss_pred HHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCC-CC-----CCCCCCeEEEEEc
Q 011010 35 ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS-FT-----PKKGKPSVIMFVG 108 (495)
Q Consensus 35 i~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~-~~-----~~~~~~~vI~ivG 108 (495)
+.+.|..+++...++-.+..++.+.+..+. ...-....+.+.|++.|.+........ +. .....|.+|+|.|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g--~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEG--IKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcC--CEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 568888999988888888888877765442 122344667778888887766543211 11 1123577899999
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 109 ~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++||||||++.+||.+| |.. .++++|++|
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 99999999999999887 444 588899887
No 373
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.08 E-value=8.2e-05 Score=72.77 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..+++++|+||+||||++..++....++|.+|..++.+-
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 357999999999999999999988778899999999963
No 374
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.07 E-value=1.2e-05 Score=75.49 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHh---ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||+|...... +. ......+|.+++|.|.+....-.+ ....+. ... +..+|-||+|+..
T Consensus 48 ~v~l~i~Dt~G~~~~~~-----~~--~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~-piilvgnK~Dl~~ 119 (176)
T cd04133 48 TVNLGLWDTAGQEDYNR-----LR--PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNV-PIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEEECCCCccccc-----cc--hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEeChhhcc
Confidence 46788999999643221 11 113348899999999874332211 122222 223 3589999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... .......+|. ...++.+..-....+-..+|+..|.| ++.+++.+.+.+
T Consensus 120 ~~~~~--~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n-V~~~F~~~~~~~ 172 (176)
T cd04133 120 DKQYL--ADHPGASPIT-TAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDAAIKVV 172 (176)
T ss_pred Chhhh--hhccCCCCCC-HHHHHHHHHHcCCCEEEECCCCcccC-HHHHHHHHHHHH
Confidence 32100 0000000000 00011111101111335689999999 999999887654
No 375
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.07 E-value=2.1e-05 Score=72.25 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=55.4
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHH---HHHHhc-cCCceEEEEeCccCCCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQ---AQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~---~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
+.+.|-||+|.... . . ...+|.+++|.|.+.... +... +..... ...+..+|.||.|....
T Consensus 47 ~~l~i~D~~g~~~~--~-------~---~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 47 HLLLIRDEGGAPDA--Q-------F---ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred EEEEEEECCCCCch--h-------H---HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 45778999998421 1 1 126899999999875322 1111 111111 11235899999997421
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.....+.. .|+.+. ... ..+-..+|+..|.| ++.+++.+.+.
T Consensus 115 ~~~~v~~~-----------~~~~~~~~~~-~~~~~e~SAk~~~~-i~~~f~~~~~~ 157 (158)
T cd04103 115 NPRVIDDA-----------RARQLCADMK-RCSYYETCATYGLN-VERVFQEAAQK 157 (158)
T ss_pred CCcccCHH-----------HHHHHHHHhC-CCcEEEEecCCCCC-HHHHHHHHHhh
Confidence 11111100 001111 110 12334689999999 99999887643
No 376
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=4.8e-05 Score=85.31 Aligned_cols=215 Identities=18% Similarity=0.133 Sum_probs=107.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--ceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~--kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
.+.|.|+|+-.+|||||+-.|..+-..-.+ +|. +. .+..|. .......++.+....+ .
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~--~g----~~~~D~-~e~EqeRGITI~saa~-------------s 69 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVH--DG----AATMDW-MEQEQERGITITSAAT-------------T 69 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCcccc--CC----CccCCC-cHHHHhcCCEEeeeee-------------E
Confidence 467999999999999999999866432111 111 00 000111 1112222333222111 1
Q ss_pred HhhcC-CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHH-HHhccCCceEEEEeCccCC
Q 011010 179 FKKEN-CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQ-AFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 179 ~~~~~-~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~-~f~~~~~~~~vIlTK~D~~ 254 (495)
+.+++ +.+-||||||.-. +..|..+..++ .|..++|+||..|-... ...+ +....++ ..+++||+|..
T Consensus 70 ~~~~~~~~iNlIDTPGHVD----Ft~EV~rslrv---lDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~ 141 (697)
T COG0480 70 LFWKGDYRINLIDTPGHVD----FTIEVERSLRV---LDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRL 141 (697)
T ss_pred EEEcCceEEEEeCCCCccc----cHHHHHHHHHh---hcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECcccc
Confidence 11343 8899999999753 33344444444 48899999998764322 1222 2223345 59999999975
Q ss_pred CCc-cchhH-HHHhcCCCeEE----eccCCCccc---ccccCccchh-hhccCCCCc--------HHHHHHHHHhCCCCC
Q 011010 255 AKG-GGALS-AVAATKSPVIF----IGTGEHMDE---FEVFDVKPFV-SRLLGMGDW--------SGFMDKIHEVVPMDQ 316 (495)
Q Consensus 255 ~~~-g~~ls-~~~~~~~PI~f----i~~Ge~i~~---l~~f~p~~~v-S~l~G~Gdi--------~~L~e~i~~~~~~~~ 316 (495)
... ..... +....+.++.- |+..+.+.. +..-....+- +......++ .++...+.+.+-+-
T Consensus 142 ~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~- 220 (697)
T COG0480 142 GADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEF- 220 (697)
T ss_pred ccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhc-
Confidence 331 11222 22233443322 223222221 1111111111 111111111 22233333333222
Q ss_pred chHHhhccccc-hhcHHHHHHHHHHHhcc
Q 011010 317 QPELLQKLSEG-NFTLRIMYEQFQNILKM 344 (495)
Q Consensus 317 ~~~~~~~~~~~-~f~~~d~~~ql~~~~k~ 344 (495)
..++.++.+.| +++.+.++..|+.-..-
T Consensus 221 de~l~e~yl~g~e~~~~~i~~~i~~~~~~ 249 (697)
T COG0480 221 DEELMEKYLEGEEPTEEEIKKALRKGTIA 249 (697)
T ss_pred CHHHHHHHhcCCCccHHHHHHHHHHhhhc
Confidence 26688888888 78999999988874433
No 377
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.06 E-value=8.7e-05 Score=73.11 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=36.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch
Q 011010 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (495)
Q Consensus 103 vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~ 143 (495)
+++++ |..||||||++..||.+++++|++|.++++|+..+.
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~ 45 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNAT 45 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCch
Confidence 45554 888999999999999999999999999999998763
No 378
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.06 E-value=0.00015 Score=70.12 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=76.5
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEec---cCC---cchhHHHHHhhhhhcC----c-ceeccCC-------
Q 011010 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA---DTF---RAGAFDQLKQNATKAK----I-PFYGSYT------- 164 (495)
Q Consensus 104 I~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~---D~~---R~~a~dqL~~~a~~~~----i-~~~~~~~------- 164 (495)
++|+|.. |+|||+++..|+.+|+++|++|...-+ ... +....+.+...+.... + ++.....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 5666655 999999999999999999998876542 111 1112233333221110 0 1111000
Q ss_pred --C--CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHh
Q 011010 165 --E--SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFK 238 (495)
Q Consensus 165 --~--~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~ 238 (495)
+ ........+.++.+ .++||++|||+||.............++...+ ...+++|+++..+.- .....+.+.
T Consensus 82 ~~~~~~~~~~~i~~~~~~l-~~~~D~viIEg~gg~~~~~~~~~~~adl~~~l--~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 82 ALEGVAIDLEKISAALRRL-AQQYDLVLVEGAGGLLVPLTEDLTLADLAKQL--QLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHhCCCCCHHHHHHHHHHH-HhhCCEEEEECCCceeccCCCCCcHHHHHHHh--CCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 0 00012233444443 35899999999985321100000012233333 245788888765421 112222232
Q ss_pred c-cCCceEEEEeCccCC
Q 011010 239 Q-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 239 ~-~~~~~~vIlTK~D~~ 254 (495)
. ..++.++|+|+++..
T Consensus 159 ~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 159 ARGLPLAGWVANGIPPE 175 (222)
T ss_pred HCCCCeEEEEEccCCCc
Confidence 2 356779999999865
No 379
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=3.1e-05 Score=80.57 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcc-eeccCCCCC-hHHH-----HHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP-FYGSYTESD-PVRI-----AVE 174 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~-~~~~~~~~d-p~~i-----a~~ 174 (495)
-.++|+|...+|||||+.+|.+.+. .|+. ...+.++..+...+-. |+..+.-+. ..+- ..-
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G-------~id~-----~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~ 75 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLG-------EIDK-----RTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV 75 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhC-------CCCH-----HHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE
Confidence 4589999999999999999985431 1111 1223333333222221 111110000 0000 000
Q ss_pred HHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc----------ccHHHHHHHHhccCCce
Q 011010 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG----------QAAFDQAQAFKQSVSVG 244 (495)
Q Consensus 175 ~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g----------~~~~~~~~~f~~~~~~~ 244 (495)
+...+..+.|.+-|||+||.. +....| +..+. .+|..+|||||..+ |.-.....+.-..+.-.
T Consensus 76 ~~~~fet~k~~~tIiDaPGHr----dFvknm--ItGas-qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~l 148 (428)
T COG5256 76 AHSKFETDKYNFTIIDAPGHR----DFVKNM--ITGAS-QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQL 148 (428)
T ss_pred EEEEeecCCceEEEeeCCchH----HHHHHh--hcchh-hccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceE
Confidence 111233457889999999932 333333 33333 88999999999865 22111111111113335
Q ss_pred EEEEeCccCCCC
Q 011010 245 AVIVTKMDGHAK 256 (495)
Q Consensus 245 ~vIlTK~D~~~~ 256 (495)
+|.+||+|...-
T Consensus 149 IVavNKMD~v~w 160 (428)
T COG5256 149 IVAVNKMDLVSW 160 (428)
T ss_pred EEEEEccccccc
Confidence 888999999753
No 380
>PRK04296 thymidine kinase; Provisional
Probab=98.06 E-value=4.5e-05 Score=72.53 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+++++|++|+||||++..++..+..+|++|.++.. |+ |.+ ....+++.++++.... ...+.++ .+.+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~----~~~i~~~lg~~~~~~~-~~~~~~~-~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYG----EGKVVSRIGLSREAIP-VSSDTDI-FELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-ccc----CCcEecCCCCcccceE-eCChHHH-HHHHHh-
Confidence 368889999999999999999999988999999954 54 222 1223455554432210 0111122 111222
Q ss_pred hhcCCcEEEEeCCCCCc
Q 011010 180 KKENCDLIIVDTSGRHK 196 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~ 196 (495)
....+|+|+||.+.+..
T Consensus 75 ~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred hCCCCCEEEEEccccCC
Confidence 34578999999998763
No 381
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=4.4e-05 Score=71.35 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=33.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
++|.|+||+||||++..++....++|.+|.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 788999999999999999999999999999999865
No 382
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=7.2e-06 Score=86.14 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=71.2
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHH---HHHhccCCceEEEEeCccCCCCc-
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQA---QAFKQSVSVGAVIVTKMDGHAKG- 257 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~---~~f~~~~~~~~vIlTK~D~~~~~- 257 (495)
+.|-+-||||||.-...-+ +.+.+..+...++||||+.|-++...+ .++...+.+ .-|+||+|+.+..
T Consensus 74 ~~Y~lnlIDTPGHVDFsYE-------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeI-iPViNKIDLP~Adp 145 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI-IPVLNKIDLPAADP 145 (603)
T ss_pred CEEEEEEcCCCCccceEEE-------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEE-EEeeecccCCCCCH
Confidence 3588889999997533321 222222567889999999886655444 455555555 7899999986442
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
....... |.+=.+..- ....+|+.+|.| +++++|+|.+.+|.
T Consensus 146 ervk~eI-------------e~~iGid~~-dav~~SAKtG~g-I~~iLe~Iv~~iP~ 187 (603)
T COG0481 146 ERVKQEI-------------EDIIGIDAS-DAVLVSAKTGIG-IEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHH-------------HHHhCCCcc-hheeEecccCCC-HHHHHHHHHhhCCC
Confidence 1111111 111112222 236799999999 99999999999973
No 383
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.04 E-value=6.3e-06 Score=75.43 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
...++++|.|||||||++|.|. +.+..-++.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~------~~~~~~~~~ 130 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALL------NKLKLKVGN 130 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHH------ccccccccC
Confidence 4579999999999999999999 655544444
No 384
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.02 E-value=9.9e-05 Score=72.38 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~ 149 (495)
.+++++|+||+||||++.+++..+.++|+++..++.+.......+++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 479999999999999999999888888999999998876655555543
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.02 E-value=8.6e-06 Score=73.39 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.++++|.|||||||++|.|. +.+..-++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~------~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV------GKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC
Confidence 79999999999999999999 666554444
No 386
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.02 E-value=0.0001 Score=71.10 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..++.|.|+||+||||++..+|....++|.+|+.++.|.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 457899999999999999999999988899999999874
No 387
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.01 E-value=8.4e-06 Score=82.05 Aligned_cols=31 Identities=39% Similarity=0.466 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
...++++|.|||||||++|.|. +.+++-++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~------~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLA------GKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCccccCC
Confidence 4579999999999999999999 777666655
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.98 E-value=8e-06 Score=82.69 Aligned_cols=59 Identities=27% Similarity=0.245 Sum_probs=42.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...++|+|.|||||||++|+|. |.+++-++. .+.+|+.-..+.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~------~~~~~~~~~-----------~~g~T~~~~~~~-------------------- 163 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLA------GKKIAKTGN-----------RPGVTKAQQWIK-------------------- 163 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCccccCC-----------CCCeEEEEEEEE--------------------
Confidence 4579999999999999999999 888777766 444454422111
Q ss_pred hcCCcEEEEeCCCCCcc
Q 011010 181 KENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~ 197 (495)
-+..+.||||||+...
T Consensus 164 -~~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 164 -LGKGLELLDTPGILWP 179 (287)
T ss_pred -eCCcEEEEECCCcCCC
Confidence 1345799999998644
No 389
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.97 E-value=3.5e-05 Score=79.08 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=83.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec---cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~---D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~ 174 (495)
.|.+-.|++||+.|+||||++|.|... .+++. |..|+.. ......+.++...-..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~--------~l~~~~~~~~~~~~~------~~~~~~i~~~~~~l~e~------- 78 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT--------SLVDETEIDDIRAEG------TSPTLEIKITKAELEED------- 78 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh--------hccCCCCccCccccc------CCcceEEEeeeeeeecC-------
Confidence 466778999999999999999999943 23333 3344321 11112222222111111
Q ss_pred HHHHHhhcCCcEEEEeCCCCCcc------hHHHHHHHHH-----------HHHH--h--cCCCEEEEEeeCC-ccccH--
Q 011010 175 GVETFKKENCDLIIVDTSGRHKQ------EAALFEEMRQ-----------VSEA--T--VNPDLVIFVMDSS-IGQAA-- 230 (495)
Q Consensus 175 ~l~~~~~~~~dvviIDTaG~~~~------~~~l~~el~~-----------i~~~--i--~~~d~vllVvDa~-~g~~~-- 230 (495)
.-...+.+|||||+... -+.....+.. +.+. . ...+.+||.+.++ .+-..
T Consensus 79 ------~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D 152 (373)
T COG5019 79 ------GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD 152 (373)
T ss_pred ------CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH
Confidence 11457899999997321 1222222211 1111 0 0456788888876 34343
Q ss_pred HHHHHHHhccCCceEEEEeCccCCCCcc------chhHHHHhcCCCeEE
Q 011010 231 FDQAQAFKQSVSVGAVIVTKMDGHAKGG------GALSAVAATKSPVIF 273 (495)
Q Consensus 231 ~~~~~~f~~~~~~~~vIlTK~D~~~~~g------~~ls~~~~~~~PI~f 273 (495)
+..++.+.+.+++ +-|+.|.|..+... .....+....+||.+
T Consensus 153 Ie~Mk~ls~~vNl-IPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 153 IEAMKRLSKRVNL-IPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHhcccCe-eeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4467778887776 88999999865421 122334445667664
No 390
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.95 E-value=0.00011 Score=75.48 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
..++.|.|+||+||||++..++...++.|.+|+.+++.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 35899999999999999999999999999999999874
No 391
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.94 E-value=2.2e-05 Score=79.36 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
-.|++||.+|+||||++|.|. +..+...+. .+-+... .......+.........+ .
T Consensus 5 fnImVvG~sG~GKTTFIntL~------~~~~~~~~~-~~~~~~~----~~~~~~~i~~~~~~l~e~-------------~ 60 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLF------NSDIISEDS-SIPPPSA----SISRTLEIEERTVELEEN-------------G 60 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHH------TSS----------S----------SCEEEEEEEEEEEET-------------C
T ss_pred EEEEEECCCCCCHHHHHHHHH------hcccccccc-ccccccc----ccccccceeeEEEEeccC-------------C
Confidence 469999999999999999999 544333321 1110000 000001111110000000 0
Q ss_pred cCCcEEEEeCCCCCcc-h-----HHHHHHH----HHHHH-Hh---------cCCCEEEEEeeCCc-c--ccHHHHHHHHh
Q 011010 182 ENCDLIIVDTSGRHKQ-E-----AALFEEM----RQVSE-AT---------VNPDLVIFVMDSSI-G--QAAFDQAQAFK 238 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~-~-----~~l~~el----~~i~~-~i---------~~~d~vllVvDa~~-g--~~~~~~~~~f~ 238 (495)
-...+.||||||+... + ..+...+ ..... .. ...|.+++.++++. + ...+..++.+.
T Consensus 61 ~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls 140 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS 140 (281)
T ss_dssp EEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT
T ss_pred cceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc
Confidence 1356789999997421 1 1222222 11111 11 03468899999863 3 33455677887
Q ss_pred ccCCceEEEEeCccCCCC
Q 011010 239 QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 239 ~~~~~~~vIlTK~D~~~~ 256 (495)
+.+++ +-|+.|.|..+.
T Consensus 141 ~~vNv-IPvIaKaD~lt~ 157 (281)
T PF00735_consen 141 KRVNV-IPVIAKADTLTP 157 (281)
T ss_dssp TTSEE-EEEESTGGGS-H
T ss_pred ccccE-EeEEecccccCH
Confidence 77775 889999998654
No 392
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=1.1e-05 Score=82.99 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..++++|-|||||||++|.|+ |++++.++. .+..|+.-..+..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~------~k~~~~~s~-----------~PG~Tk~~q~i~~------------------- 175 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLL------GKKVAKTSN-----------RPGTTKGIQWIKL------------------- 175 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHh------cccceeeCC-----------CCceecceEEEEc-------------------
Confidence 3569999999999999999999 999988888 4444443332211
Q ss_pred hcCCcEEEEeCCCCCcch
Q 011010 181 KENCDLIIVDTSGRHKQE 198 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~ 198 (495)
...+.|+||||+....
T Consensus 176 --~~~i~LlDtPGii~~~ 191 (322)
T COG1161 176 --DDGIYLLDTPGIIPPK 191 (322)
T ss_pred --CCCeEEecCCCcCCCC
Confidence 3447999999986544
No 393
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.94 E-value=1.3e-05 Score=71.65 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+|+++|+|||||||++..|+..+. ..+++.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHH
Confidence 589999999999999999984433 7778887644
No 394
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.93 E-value=6e-05 Score=71.94 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|.||||.... +.. .....+|.+++|.|.+....... ....+.. .. +..+|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~-------~~~--~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~-piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK-------DRR--FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV-PVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh-------hhc--ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhccc
Confidence 567899999997431 111 13348999999999875332211 1122222 23 3589999999743
Q ss_pred Cccchh-----HHHHhc--CCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 256 KGGGAL-----SAVAAT--KSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 256 ~~g~~l-----s~~~~~--~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
...... ...... ..+|. ...|+.+. .+. .+-..+|++.|.| ++.+++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~V~-~~e~~~~a~~~~--~~~~E~SAkt~~~-V~e~F~~~~~ 193 (195)
T cd01873 135 ADLDEVNRARRPLARPIKNADILP-PETGRAVAKELG--IPYYETSVVTQFG-VKDVFDNAIR 193 (195)
T ss_pred cccchhhhcccccccccccCCccC-HHHHHHHHHHhC--CEEEEcCCCCCCC-HHHHHHHHHH
Confidence 110000 000000 01110 11122221 111 1345689999999 9999988764
No 395
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.93 E-value=0.00011 Score=68.45 Aligned_cols=43 Identities=28% Similarity=0.464 Sum_probs=38.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++.+|+|+|++||||||++..|+..+...|.++.+++.|.+|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 4568999999999999999999999988899999999998753
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.91 E-value=6.8e-05 Score=71.54 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
-+++.||.||||||.|+.+-.+...-|+.+-+|..||
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 3678899999999999999999999999999999997
No 397
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.90 E-value=5e-05 Score=75.10 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=35.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
|+|+|+|||||||++..|+.++...|.++.+++.|..|
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 78999999999999999999999889999999988755
No 398
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.89 E-value=5.6e-05 Score=66.33 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~-----G~kVaIVs~D~~ 140 (495)
.+.++|.|++|+||||++..++..+... ..++..+++...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 4579999999999999999999988753 456666666433
No 399
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=5.8e-05 Score=71.14 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++|+|-++||||++++...+---.+. +-...||+|....- ++..
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~---------------------YqATIGiDFlskt~-------------~l~d 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNT---------------------YQATIGIDFLSKTM-------------YLED 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccc---------------------ccceeeeEEEEEEE-------------EEcC
Confidence 4699999999999999999984211111 11223555543111 0011
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhc------cC-CceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ------SV-SVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~------~~-~~~~vIlTK~D~~ 254 (495)
..+.+-+-||||..... .| +-..+.++...++|.|-+..+.-...-++++. .- .+..+|-||.|+.
T Consensus 69 ~~vrLQlWDTAGQERFr-----sl--ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFR-----SL--IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cEEEEEEEecccHHHHh-----hh--hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 25678899999963211 11 22455688999999998755443333333322 11 2456778999997
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCc
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQ 317 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~ 317 (495)
.+....... |++. .++... -.-+|+..|.+ +..|+.+|...+++.+.
T Consensus 142 dkrqvs~eE-------------g~~kAkel~a~--f~etsak~g~N-Vk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 142 DKRQVSIEE-------------GERKAKELNAE--FIETSAKAGEN-VKQLFRRIAAALPGMEV 189 (221)
T ss_pred chhhhhHHH-------------HHHHHHHhCcE--EEEecccCCCC-HHHHHHHHHHhccCccc
Confidence 663211111 1211 122221 13478999999 99999999999875543
No 400
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.5e-05 Score=79.01 Aligned_cols=155 Identities=17% Similarity=0.306 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---HcCCceEEEec-cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~---~~G~kVaIVs~-D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l 176 (495)
.+..+|+-.|-+||||++-||..+=. ..| -|.+ -..+.+..|+..- ...-||.+..+.-
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM~i-EkqRGISVtsSVM------------ 74 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWMEI-EKQRGISVTSSVM------------ 74 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHHHH-HHhcCceEEeeEE------------
Confidence 46799999999999999999996521 111 0111 1122333444432 2233554433211
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhc-cCCceEEEEeCccC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~~~~vIlTK~D~ 253 (495)
.|...++-+-|+||||.....++-.+ .+-.+|..+.|+||.-|-++.. ..+..+- .+|+ .-.+||+|.
T Consensus 75 -qF~Y~~~~iNLLDTPGHeDFSEDTYR-------tLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI-~TFiNKlDR 145 (528)
T COG4108 75 -QFDYADCLVNLLDTPGHEDFSEDTYR-------TLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPI-FTFINKLDR 145 (528)
T ss_pred -EeccCCeEEeccCCCCccccchhHHH-------HHHhhheeeEEEecccCccHHHHHHHHHHhhcCCce-EEEeecccc
Confidence 12234677889999998655544322 2224588999999988766432 2222222 2454 778999998
Q ss_pred CCCcc-chhHHH----HhcCCCeEE-eccCCCcc
Q 011010 254 HAKGG-GALSAV----AATKSPVIF-IGTGEHMD 281 (495)
Q Consensus 254 ~~~~g-~~ls~~----~~~~~PI~f-i~~Ge~i~ 281 (495)
..+.. .+|..+ ...-.||.+ ||.|..+.
T Consensus 146 ~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~ 179 (528)
T COG4108 146 EGRDPLELLDEIEEELGIQCAPITWPIGMGKDFK 179 (528)
T ss_pred ccCChHHHHHHHHHHhCcceecccccccCCcccc
Confidence 76642 223222 223446554 66776553
No 401
>PRK06762 hypothetical protein; Provisional
Probab=97.87 E-value=0.00013 Score=67.31 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
|.+|+|+|+|||||||++..|+.++ +..+.+++.|.+|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHH
Confidence 4689999999999999999999777 44688888877653
No 402
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.87 E-value=0.00018 Score=75.46 Aligned_cols=97 Identities=27% Similarity=0.321 Sum_probs=62.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
.+|.++|+.. +. +..++.|.|+||+||||++..++..+.+.|.+|..++.+. ..+|++..+.+.+++..
T Consensus 69 ~eLD~vLgGG---i~----~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 69 EELDRVLGGG---LV----PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHHhhcCC---cc----CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHHcCCCcc
Confidence 5666666532 11 1347999999999999999999999998889999998753 24566666666554321
Q ss_pred c--cCCCCChHHHHHHHHHHHhhcCCcEEEEeCC
Q 011010 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTS 192 (495)
Q Consensus 161 ~--~~~~~dp~~ia~~~l~~~~~~~~dvviIDTa 192 (495)
. .....+... . ++.+...++++++||.-
T Consensus 138 ~l~l~~e~~le~-I---~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 138 NLYLLAETNLED-I---LASIEELKPDLVIIDSI 167 (372)
T ss_pred cEEEEccCcHHH-H---HHHHHhcCCcEEEEcch
Confidence 1 111222222 2 22233457889999974
No 403
>PRK04328 hypothetical protein; Provisional
Probab=97.87 E-value=0.00044 Score=68.59 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..+++|.|+||+|||+++..++....++|.++..++.+-
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 357999999999999999999988778899999999865
No 404
>PRK06526 transposase; Provisional
Probab=97.86 E-value=4.7e-05 Score=75.81 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=51.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++|+|+||+|||+++..|+..+.++|++|..+++. .-.+++.... ..... .+.+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~~-----------~~~~~----~~~l~~l-- 157 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAAH-----------HAGRL----QAELVKL-- 157 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHHH-----------hcCcH----HHHHHHh--
Confidence 3589999999999999999999999999999876652 1122222110 00011 1122222
Q ss_pred cCCcEEEEeCCCCCcchHH
Q 011010 182 ENCDLIIVDTSGRHKQEAA 200 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~ 200 (495)
..+|++|||..|....+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred ccCCEEEEcccccCCCCHH
Confidence 3689999999998765443
No 405
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.84 E-value=0.00023 Score=77.08 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.9
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 104 I~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
|+|+|.. +||||++++.|+.+|+++|.+|+..-+
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 4567766 899999999999999999999886554
No 406
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=97.83 E-value=0.00025 Score=63.60 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=64.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
+.++| +|+||||++..|+..|.++|.+|....+.. .
T Consensus 3 ~~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------------------~ 38 (134)
T cd03109 3 GFGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------------------T 38 (134)
T ss_pred EEeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------C
Confidence 34456 679999999999999999999999776621 1
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc-cCCceEEEEeCccCC
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
+|+++|+.+|-....-.......++.... +. .+++|.++..+. ++....+..+. .+.+.++|.|.++..
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~-~~-~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKEL-NL-PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHh-CC-CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 68999999975321100000012233344 33 367888776542 12222333322 356789999988754
No 407
>PRK06696 uridine kinase; Validated
Probab=97.83 E-value=3.5e-05 Score=75.02 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=38.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.+.+|+|.|++||||||++.+|+..|...|..|.+++.|-|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4679999999999999999999999988888898888887654
No 408
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=97.83 E-value=0.00037 Score=66.37 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=86.4
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEec---cCCcchhHHHHHhhhhhcC----cceeccCCCCChHHHH--
Q 011010 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAK----IPFYGSYTESDPVRIA-- 172 (495)
Q Consensus 103 vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~---D~~R~~a~dqL~~~a~~~~----i~~~~~~~~~dp~~ia-- 172 (495)
.|.|+|. +|||||+++..|+.+|.++|.+|...-+ ..-.....+-+........ +..+.-.....|.-.+
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPASPHLAAEL 81 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-HHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCcccCHHHHhhc
Confidence 4778887 5999999999999999999999986543 1111122333333222111 1111111111222221
Q ss_pred ------HHHH--HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc-cC
Q 011010 173 ------VEGV--ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SV 241 (495)
Q Consensus 173 ------~~~l--~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~-~~ 241 (495)
.+.+ +.+ .+.+|++||+.+|..........-..++.+.+ ++ .+++|+++..+. +.....+.+.. ..
T Consensus 82 ~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L-~a-~vIlV~~~~~g~i~~~l~~~~~~~~~g~ 158 (199)
T PF13500_consen 82 EGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNADIAKAL-GA-PVILVASGRLGTINHTLLTIEALKQRGI 158 (199)
T ss_dssp HT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHHHHHHHH-T--EEEEEEESSTTHHHHHHHHHHHHHCTTS
T ss_pred cCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHHHHHHHc-CC-CEEEEeCCCCCCHHHHHHHHHHHHhcCC
Confidence 1112 222 35899999999886432100001113355555 44 478899887652 22223344443 35
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
++.++|+|+++... ..-.+...++.|+.
T Consensus 159 ~v~GvI~N~~~~~~---~~~~l~~~~~i~vl 186 (199)
T PF13500_consen 159 RVLGVILNRVPEPE---NLEALREKSGIPVL 186 (199)
T ss_dssp -EEEEEEEECTCCH---HHHHHHHHHCCEEC
T ss_pred CEEEEEEECCCCHH---HHHHHHHhCCCCEE
Confidence 78899999976542 22333444555543
No 409
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.83 E-value=1.8e-05 Score=73.24 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa 122 (495)
++++|+|++|||||||+|.|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999
No 410
>PHA02542 41 41 helicase; Provisional
Probab=97.82 E-value=0.0013 Score=71.31 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
..++|.|+||+||||++..+|..+++.|++|++++.+--.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 3788899999999999999999988889999999997543
No 411
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.82 E-value=0.00033 Score=67.71 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcC------CceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKG------WKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G------~kVaIVs~D 138 (495)
..++.|+|+||+||||++..++......+ .+|..++.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 34899999999999999999998877666 788888885
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.82 E-value=0.00027 Score=70.42 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCcceeccCC-CCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~-~~dp~~ia~~~l~~~ 179 (495)
.+++|.|+||+||||++..++..++.+ |++|+.++.+.-.......+... ..++++..... ..........++..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDAAFDEF 108 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHH--HhCCCcccCCccccccHHHHHHHHHHh
Confidence 478999999999999999999998876 99999999965211111112111 12232211100 111112223334444
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDS 224 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa 224 (495)
.. ...+.++|+++.... +.+.+.++.+... ...-++|||.
T Consensus 109 ~~-~~~l~i~d~~~~~~~-~~i~~~i~~~~~~---~~~~~vvID~ 148 (271)
T cd01122 109 EG-TGRLFMYDSFGEYSM-DSVLEKVRYMAVS---HGIQHIIIDN 148 (271)
T ss_pred cC-CCcEEEEcCCCccCH-HHHHHHHHHHHhc---CCceEEEECC
Confidence 32 234677887765332 3344444433322 2345788887
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.81 E-value=8.9e-05 Score=71.99 Aligned_cols=53 Identities=30% Similarity=0.354 Sum_probs=38.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKI 157 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i 157 (495)
..++++.|+||+|||+++..++....++ |.+|..|+.+.-. +++.......+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~----~~l~~~~~s~g~ 72 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP----EELIENMKSFGW 72 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H----HHHHHHHHTTTS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH----HHHHHHHHHcCC
Confidence 3589999999999999999999888888 9999999986432 444444444443
No 414
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.81 E-value=0.00027 Score=67.61 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCcceec-cCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~-~~~~~dp~~ia~~~l~~~ 179 (495)
+.|+|+|++||||||+++.|+.++... +.++..+. |+. +...+ ....+.. .....++ ....+++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~-----E~~~~----~~~~~i~q~~vg~~~-~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPI-----EFVHE----SKRSLINQREVGLDT-LSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCc-----ccccc----CccceeeecccCCCc-cCHHHHHHHH
Confidence 479999999999999999999888754 33444333 331 11100 0111111 0111111 2234456666
Q ss_pred hhcCCcEEEEeCCC
Q 011010 180 KKENCDLIIVDTSG 193 (495)
Q Consensus 180 ~~~~~dvviIDTaG 193 (495)
...+.|++++|-+.
T Consensus 71 Lr~~pd~ii~gEir 84 (198)
T cd01131 71 LRQDPDVILVGEMR 84 (198)
T ss_pred hcCCcCEEEEcCCC
Confidence 56689999999974
No 415
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.80 E-value=0.00064 Score=66.82 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..+++|.|+||+||||++..++....++|.++..|+.+-
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 357999999999999999999988778899999999864
No 416
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.79 E-value=0.00029 Score=72.43 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+++.|.|+||+||||++..++...++.|.+++.|++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 35788999999999999999999999999999999984
No 417
>PRK12289 GTPase RsgA; Reviewed
Probab=97.78 E-value=2.3e-05 Score=81.55 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa 122 (495)
.+++|+|+||||||||+|.|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHc
Confidence 368999999999999999999
No 418
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.76 E-value=3.9e-05 Score=69.49 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceE-EEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa-IVs~D~ 139 (495)
+|+|+|+.||||||++.+|+.+|.++|++|+ +.+.|.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 7999999999999999999999999999999 666654
No 419
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.76 E-value=0.00029 Score=65.72 Aligned_cols=42 Identities=31% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++.+|+|+|++||||||++..|+..|...+..+.+++.|.+|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 356899999999999999999999998888888888876543
No 420
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.76 E-value=0.00034 Score=73.46 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=81.2
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 103 vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.|+|.|+. |+||||.+..|...|.++|.+|--.. +|.--|+-.. +.....-.+++.+... .+.++....+.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~-~atG~~srNLD~~mm~-----~~~v~~~f~~~ 75 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHT-AATGRPSRNLDSWMMG-----EEGVRALFARA 75 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhh-HhhCCccCCCchhhcC-----HHHHHHHHHHh
Confidence 37788877 99999999999999999987776433 3322221111 1111111222211100 11122222222
Q ss_pred hhcCCcEEEEeC-CCCCcc-hHHH-HHHHHHHHHHhcCCCEEEEEeeCCc-cccHHHHHHH---HhccCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDT-SGRHKQ-EAAL-FEEMRQVSEATVNPDLVIFVMDSSI-GQAAFDQAQA---FKQSVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDT-aG~~~~-~~~l-~~el~~i~~~i~~~d~vllVvDa~~-g~~~~~~~~~---f~~~~~~~~vIlTK~D 252 (495)
.++.|+.||.- =|.... .... ...-..+.+.+.- -|++|+|+.. .+....++.. |...+++.|||+|++-
T Consensus 76 -~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~--PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVg 152 (451)
T COG1797 76 -AADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGA--PVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVG 152 (451)
T ss_pred -cCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCC--CEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 24677888753 222111 0000 0001224444422 3899999874 3444445544 4456788999999996
Q ss_pred CCCCccchhHHHHh-cCCCe
Q 011010 253 GHAKGGGALSAVAA-TKSPV 271 (495)
Q Consensus 253 ~~~~~g~~ls~~~~-~~~PI 271 (495)
......-...++.. +++||
T Consensus 153 serH~~llr~Ale~~~gv~v 172 (451)
T COG1797 153 SERHYELLRDALEEYTGVPV 172 (451)
T ss_pred CHHHHHHHHHHhhhcCCCcE
Confidence 54333323334433 55554
No 421
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.76 E-value=0.00046 Score=78.11 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=79.6
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+.|+|.. |+|||+++..|+.+|.++|.+|...-++...|-..+....+ ..........+...+.+..+ .
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~--------~~~~~~~~~~~~I~~~~~~l-~ 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEAL--------LASGQLDELLEEIVARYHAL-A 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHH--------HhccCChHHHHHHHHHHHHh-c
Confidence 46777665 89999999999999999999999887644332112221110 00011112223334444443 3
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHH----HHHHh--ccCCceEEEEeC--c
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQ----AQAFK--QSVSVGAVIVTK--M 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~----~~~f~--~~~~~~~vIlTK--~ 251 (495)
.+||++|||+++.............++...+ .+.+++|+++..+. ++.+. ...|. ...++.++|+|+ +
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L--~~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v 152 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL--GAEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNA 152 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHh--CCCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCC
Confidence 6899999999874332110001112344444 34578888876432 22332 23332 235678999999 5
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
|..
T Consensus 153 ~~~ 155 (684)
T PRK05632 153 PVD 155 (684)
T ss_pred CHH
Confidence 543
No 422
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.75 E-value=0.00012 Score=69.93 Aligned_cols=92 Identities=23% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh--HHHHHhhhhhcCcceeccCCCCChHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--FDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a--~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~ 175 (495)
...|..+++.|+|||||||++..+...+. +....++++|.||.-- ++.+....... ....+......++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~----~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDE----ASELTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCC----THHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhh----hHHHHHHHHHHHHHHH
Confidence 35678999999999999999999987655 6788999999988532 33332211000 0011111223345556
Q ss_pred HHHHhhcCCcEEEEeCCCCCc
Q 011010 176 VETFKKENCDLIIVDTSGRHK 196 (495)
Q Consensus 176 l~~~~~~~~dvviIDTaG~~~ 196 (495)
++.+...++++ ++||.....
T Consensus 86 ~~~a~~~~~ni-i~E~tl~~~ 105 (199)
T PF06414_consen 86 IEYAIENRYNI-IFEGTLSNP 105 (199)
T ss_dssp HHHHHHCT--E-EEE--TTSS
T ss_pred HHHHHHcCCCE-EEecCCCCh
Confidence 66776778875 559877643
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.75 E-value=0.00018 Score=78.22 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~ 158 (495)
..+++|.|+||+||||++..++...+++|.++..++.+- ..+|+...+.+.+++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE----s~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE----SRAQLLRNAYSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC----CHHHHHHHHHHcCCC
Confidence 358999999999999999999999999999999999864 345666666666654
No 424
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.75 E-value=0.00014 Score=66.28 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+|+|+|+|||||||++..|+.++...|.++.+++.|.+|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4789999999999999999999998898888899888765
No 425
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=3.1e-05 Score=79.84 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~ 226 (495)
...+-|||.||.-..... -+-| .+..+-++++|.++.|||+..
T Consensus 66 ~~~ve~vDIAGLV~GAs~-GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 66 PAPVEFVDIAGLVKGASK-GEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeeEEEEecccCCCccc-CCCcchHHHHhhhhcCeEEEEEEecC
Confidence 456789999997433221 1112 345555568999999999974
No 426
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00052 Score=71.63 Aligned_cols=99 Identities=27% Similarity=0.382 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcC
Q 011010 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (495)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~ 156 (495)
..=..||.+.|+..--+ ..+|+|-|-||.|||||+..++..+++++ +|+.|+.. .+..|++-.++|.+
T Consensus 76 ~tg~~EldRVLGGG~V~-------Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGE----ES~~QiklRA~RL~ 143 (456)
T COG1066 76 STGIEELDRVLGGGLVP-------GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGE----ESLQQIKLRADRLG 143 (456)
T ss_pred cCChHHHHhhhcCCccc-------ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCC----cCHHHHHHHHHHhC
Confidence 34457788888754322 34789999999999999999999999988 99999973 45678888899988
Q ss_pred cceec--cCCCCChHHHHHHHHHHHhhcCCcEEEEeC
Q 011010 157 IPFYG--SYTESDPVRIAVEGVETFKKENCDLIIVDT 191 (495)
Q Consensus 157 i~~~~--~~~~~dp~~ia~~~l~~~~~~~~dvviIDT 191 (495)
++... ...+.+..++ ++.+....+++++||.
T Consensus 144 ~~~~~l~l~aEt~~e~I----~~~l~~~~p~lvVIDS 176 (456)
T COG1066 144 LPTNNLYLLAETNLEDI----IAELEQEKPDLVVIDS 176 (456)
T ss_pred CCccceEEehhcCHHHH----HHHHHhcCCCEEEEec
Confidence 65422 1223333333 3444556899999994
No 427
>PRK07667 uridine kinase; Provisional
Probab=97.72 E-value=5.8e-05 Score=71.86 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+.+|+|.|++||||||++..|+..+...|.++.+++.|.|
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4689999999999999999999999999999999999974
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.71 E-value=0.00024 Score=71.42 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=54.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.|||||||++..|..++.+.+++|.+|+.|..+ ..+. . +.....+.......+.+++.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~----------~~~~-~-y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG----------IDRN-D-YADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-----------TTS-S-S--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc----------cchh-h-hhchhhhHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999999999999975422 0111 1 111111111122234445554433
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
-++||+|-.=+.. .+--++-.+.+.. ....+.+-+++.
T Consensus 71 -~~iVI~Dd~nYiK---g~RYelyclAr~~-~~~~c~i~~~~~ 108 (270)
T PF08433_consen 71 -DTIVILDDNNYIK---GMRYELYCLARAY-GTTFCVIYCDCP 108 (270)
T ss_dssp --SEEEE-S---SH---HHHHHHHHHHHHT-T-EEEEEEEE--
T ss_pred -CeEEEEeCCchHH---HHHHHHHHHHHHc-CCCEEEEEECCC
Confidence 3899999765432 3334454555555 444454555543
No 429
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.71 E-value=0.00015 Score=71.73 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.+.|.|+||+|||+++.+++.++.++|++|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 58999999999999999999999999999999876
No 430
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.70 E-value=0.00043 Score=65.11 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH----------cCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----------KGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~----------~G~kVaIVs~D~~R 141 (495)
.+++|+|++|+||||++..++..+.. ++.+|+.++.|.-.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 47999999999999999999998886 56799999998643
No 431
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.69 E-value=0.00084 Score=65.24 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
...++++|+||+||||++..++....++|.++..++.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 347999999999999999999987777899999999854
No 432
>PRK06893 DNA replication initiation factor; Validated
Probab=97.69 E-value=0.00011 Score=71.80 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.+.+.|+||+|||+++..++..+.+++.++..++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 58999999999999999999999888888887776
No 433
>PRK12288 GTPase RsgA; Reviewed
Probab=97.69 E-value=3.6e-05 Score=80.03 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIV 135 (495)
+++|+|+||||||||+|.|. +....-+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll------~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALL------PEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhc------cccceee
Confidence 58999999999999999999 6655443
No 434
>PRK13796 GTPase YqeH; Provisional
Probab=97.69 E-value=8.4e-05 Score=77.86 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+.+++||.|||||||++|+|...... ..+.+-++. .+++|+.-+.+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~-~~~~~~~s~-----------~pGTT~~~~~~~l-------------------- 208 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITG-EKDVITTSR-----------FPGTTLDKIEIPL-------------------- 208 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccC-ccceEEecC-----------CCCccceeEEEEc--------------------
Confidence 46899999999999999999843311 123444555 5566665443321
Q ss_pred cCCcEEEEeCCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~ 197 (495)
+-...|+||||+...
T Consensus 209 -~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 209 -DDGSFLYDTPGIIHR 223 (365)
T ss_pred -CCCcEEEECCCcccc
Confidence 112489999998643
No 435
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.68 E-value=0.00045 Score=67.03 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=41.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i 157 (495)
..++++.|+||+|||+++..++....++|++|..++.+- ..+++...+...+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~----~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE----REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC----CHHHHHHHHHHcCC
Confidence 357999999999999999999988888899999999964 23455554444443
No 436
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.68 E-value=5.1e-05 Score=69.95 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
++.|+|++||||||++.+|+..+..+|++|+++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4789999999999999999999999999999998763
No 437
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.67 E-value=4.9e-05 Score=70.07 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=37.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+.+|-|+|++||||||++..|...|...|.++.+++.|..|.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 568999999999999999999999999999999999998775
No 438
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0002 Score=68.58 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=63.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
++.|.++|+++||||++...|..- -++-.+++. .++ ...|..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~g----s~~~TvtSi-----------epn-----~a~~r~------------------ 79 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITG----SHRGTVTSI-----------EPN-----EATYRL------------------ 79 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcC----CccCeeeee-----------ccc-----eeeEee------------------
Confidence 356999999999999999998731 133333333 111 111110
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHh---------ccCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~---------~~~~~~~vIlTK 250 (495)
....+-|||-||.......+.+.+ ..-..+-.++||||+..... ..+.+..+. ...++..+.+||
T Consensus 80 -gs~~~~LVD~PGH~rlR~kl~e~~----~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNK 154 (238)
T KOG0090|consen 80 -GSENVTLVDLPGHSRLRRKLLEYL----KHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNK 154 (238)
T ss_pred -cCcceEEEeCCCcHHHHHHHHHHc----cccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecc
Confidence 122368999999754333333222 11115677999999986432 222222221 122345788999
Q ss_pred ccCC
Q 011010 251 MDGH 254 (495)
Q Consensus 251 ~D~~ 254 (495)
.|..
T Consensus 155 qDl~ 158 (238)
T KOG0090|consen 155 QDLF 158 (238)
T ss_pred hhhh
Confidence 9984
No 439
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.66 E-value=0.00041 Score=74.61 Aligned_cols=98 Identities=26% Similarity=0.278 Sum_probs=63.8
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
.+|.++++..-. +..++.|.|+||+||||++..++..+.++|.+|..++..- ..+|+...+.+.++...
T Consensus 67 ~~LD~~LgGGi~-------~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 67 GELDRVLGGGLV-------PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSD 135 (446)
T ss_pred HHHHHHhcCCcc-------CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChh
Confidence 566677764211 1347999999999999999999999988899999999742 24566655666554211
Q ss_pred --ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCC
Q 011010 161 --GSYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (495)
Q Consensus 161 --~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG 193 (495)
....+.+.. ..+..+...++++++||...
T Consensus 136 ~l~~~~e~~l~----~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 136 NLYLLAETNLE----AILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred cEEEeCCCCHH----HHHHHHHhhCCCEEEEechh
Confidence 111222222 22233344578999999854
No 440
>PRK08760 replicative DNA helicase; Provisional
Probab=97.66 E-value=0.0033 Score=68.21 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC-CCh--HHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDP--VRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~-~dp--~~ia~~~l 176 (495)
...++|.|+||+||||++..+|...+. .|++|++.|.+--.-.-...+... ..+++....... ... ......++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~--~s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS--NGRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh--hCCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 357899999999999999999998874 599999999965332222222221 112222111111 111 12233445
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC-----cc--c----cH---HHHHHHHhccCC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS-----IG--Q----AA---FDQAQAFKQSVS 242 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~-----~g--~----~~---~~~~~~f~~~~~ 242 (495)
..+. ...+.|-|+|+.. -+.+...++++...- . .-++|||.- .+ . +. ...++.+.+..+
T Consensus 307 ~~l~--~~~l~I~d~~~~t--~~~I~~~~r~l~~~~-~--~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 379 (476)
T PRK08760 307 KMLK--ETKIFIDDTPGVS--PEVLRSKCRRLKREH-D--LGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN 379 (476)
T ss_pred HHHh--cCCEEEeCCCCCC--HHHHHHHHHHHHHhc-C--CCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 5443 4567788888864 234444444444332 3 346777842 11 1 11 122344445566
Q ss_pred ceEEEEeCcc
Q 011010 243 VGAVIVTKMD 252 (495)
Q Consensus 243 ~~~vIlTK~D 252 (495)
+.+++++.+-
T Consensus 380 ipVi~lsQLn 389 (476)
T PRK08760 380 VPVIALSQLN 389 (476)
T ss_pred CEEEEeeccC
Confidence 6677777654
No 441
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.66 E-value=0.00046 Score=63.39 Aligned_cols=107 Identities=23% Similarity=0.233 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
-.|.++|+.||||||+..+|. |..+--+++ +--.+|. . +..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~------~~~~~~i~p--------------t~gf~Ik--t-----------------l~~ 57 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLL------GEDTDTISP--------------TLGFQIK--T-----------------LEY 57 (185)
T ss_pred eEEEEEecCCCCchhHHHHhc------CCCccccCC--------------ccceeeE--E-----------------EEe
Confidence 469999999999999999999 776544443 1111111 1 112
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc---ccHHHHHHHHh--cc--CCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG---QAAFDQAQAFK--QS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g---~~~~~~~~~f~--~~--~~~~~vIlTK~D~~ 254 (495)
++|.+.|-|..|..... +..+ ...++.|..++|+|++.. ++......... ++ ..+..|+.||.|..
T Consensus 58 ~~~~L~iwDvGGq~~lr----~~W~---nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 58 KGYTLNIWDVGGQKTLR----SYWK---NYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred cceEEEEEEcCCcchhH----HHHH---HhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 47899999999974322 2222 333477999999999632 22222222211 11 12458899999975
No 442
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.66 E-value=8.8e-05 Score=72.62 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+++.|+|++||||||++.+|+.+|.++|++|+++..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 479999999999999999999999999999999964
No 443
>PRK05973 replicative DNA helicase; Provisional
Probab=97.66 E-value=0.00057 Score=67.30 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..++|.|+||+||||++..++...+++|++|.+++.+-
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 47899999999999999999998888899999999854
No 444
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.66 E-value=0.0011 Score=68.02 Aligned_cols=45 Identities=24% Similarity=0.204 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH------HcCCceEEEecc-CCcchhH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------KKGWKPALVCAD-TFRAGAF 145 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~------~~G~kVaIVs~D-~~R~~a~ 145 (495)
..++-|+|+||+|||+++..++...+ ..+.+|..|++. +|++.-+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi 147 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI 147 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH
Confidence 35788999999999999999886543 135688888875 4677443
No 445
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=9.2e-05 Score=68.91 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
..++++|.+|+||||++|.|. +.+..-++.
T Consensus 116 ~~~~~~G~~~vGKstlin~l~------~~~~~~~~~ 145 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLR------GKKVAKVGN 145 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCceeecC
Confidence 479999999999999999999 665544443
No 446
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.64 E-value=4.8e-05 Score=71.06 Aligned_cols=142 Identities=24% Similarity=0.231 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec-cC----Ccchh-HHHHHh-----hhhhcCc--ceeccCCCCChH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DT----FRAGA-FDQLKQ-----NATKAKI--PFYGSYTESDPV 169 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~----~R~~a-~dqL~~-----~a~~~~i--~~~~~~~~~dp~ 169 (495)
.|+|.|+||+||||++.+++..|.+.|.++.=.-+ .. .|.|- +..+.. ++..... +-.+.+. -++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~-v~~e 79 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYF-VDLE 79 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCE-E-HH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEE-EcHH
Confidence 37899999999999999999999887777643322 11 11110 000000 0111100 0000000 0000
Q ss_pred H---HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEE
Q 011010 170 R---IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 246 (495)
Q Consensus 170 ~---ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~v 246 (495)
. ++..++..+. ...|+++||--|.......-+. +.+...+..+-.++.|+-...... .+..+...-.+..+
T Consensus 80 ~fe~~~~~~L~~~~-~~~~liviDEIG~mEl~~~~F~--~~v~~~l~s~~~vi~vv~~~~~~~---~l~~i~~~~~~~i~ 153 (168)
T PF03266_consen 80 SFEEIGLPALRNAL-SSSDLIVIDEIGKMELKSPGFR--EAVEKLLDSNKPVIGVVHKRSDNP---FLEEIKRRPDVKIF 153 (168)
T ss_dssp HHHCCCCCCCHHHH-HCCHEEEE---STTCCC-CHHH--HHHHHHHCTTSEEEEE--SS--SC---CHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHHhhc-CCCCEEEEeccchhhhcCHHHH--HHHHHHHcCCCcEEEEEecCCCcH---HHHHHHhCCCcEEE
Confidence 0 1111222222 4789999999998655433222 224445533445777776553211 23445544445566
Q ss_pred EEeCc
Q 011010 247 IVTKM 251 (495)
Q Consensus 247 IlTK~ 251 (495)
.+|+-
T Consensus 154 ~vt~~ 158 (168)
T PF03266_consen 154 EVTEE 158 (168)
T ss_dssp E--TT
T ss_pred EeChh
Confidence 66654
No 447
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.64 E-value=0.00051 Score=74.00 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=63.3
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
.+|.++|+..-. +..++++.|.||+||||++..++..+.++|.+|+.++.+- ..+|+...+.+.++.+.
T Consensus 81 ~~LD~vLgGGi~-------~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE----s~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 81 GELDRVLGGGIV-------PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE----SLQQIKMRAIRLGLPEP 149 (454)
T ss_pred HHHHHHhcCCcc-------CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC----CHHHHHHHHHHcCCChH
Confidence 556666653211 1357999999999999999999999988888999999853 24566665666554321
Q ss_pred --ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCC
Q 011010 161 --GSYTESDPVRIAVEGVETFKKENCDLIIVDTS 192 (495)
Q Consensus 161 --~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTa 192 (495)
....+.+... +. ..+...++++++||.-
T Consensus 150 ~l~~~~e~~~~~-I~---~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 150 NLYVLSETNWEQ-IC---ANIEEENPQACVIDSI 179 (454)
T ss_pred HeEEcCCCCHHH-HH---HHHHhcCCcEEEEecc
Confidence 1122233322 22 2334458999999963
No 448
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.64 E-value=9e-05 Score=72.41 Aligned_cols=43 Identities=28% Similarity=0.404 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEE-EeccCCc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL-VCADTFR 141 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaI-Vs~D~~R 141 (495)
+++.+|+|+|++||||||++..|+..+...+..+.+ ++.|.|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 457799999999999999999999999987777777 8887644
No 449
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.64 E-value=0.00043 Score=66.17 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccC----------CCCChHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY----------TESDPVRI 171 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~----------~~~dp~~i 171 (495)
+++++.|++|+||||++..++..+...|++|.+++. -..|.+.|...+ +++..... ....+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---T~~Aa~~L~~~~---~~~a~Ti~~~l~~~~~~~~~~~~~-- 90 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---TNKAAKELREKT---GIEAQTIHSFLYRIPNGDDEGRPE-- 90 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---SHHHHHHHHHHH---TS-EEEHHHHTTEECCEECCSSCC--
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---cHHHHHHHHHhh---CcchhhHHHHHhcCCccccccccc--
Confidence 468888999999999999999999999999999887 333444444331 12111100 000000
Q ss_pred HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcC-CCEEEEEeeCC
Q 011010 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVN-PDLVIFVMDSS 225 (495)
Q Consensus 172 a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~-~d~vllVvDa~ 225 (495)
...++++|||-++..... .+ ..+...+.. .--++||-|..
T Consensus 91 ---------~~~~~vliVDEasmv~~~--~~---~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 91 ---------LPKKDVLIVDEASMVDSR--QL---ARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp ----------TSTSEEEESSGGG-BHH--HH---HHHHHHS-T-T-EEEEEE-TT
T ss_pred ---------CCcccEEEEecccccCHH--HH---HHHHHHHHhcCCEEEEECCcc
Confidence 135789999999986433 22 333444422 24688888876
No 450
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.63 E-value=5.7e-05 Score=71.18 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+|+|+|.+||||||++..|+..+...|.++.+++.|-|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 489999999999999999999999889999999998653
No 451
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00091 Score=58.31 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
..++++|+||+||||++..++..+...+..+..++++.+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 46999999999999999999999887788888888855443
No 452
>PRK04040 adenylate kinase; Provisional
Probab=97.63 E-value=7.9e-05 Score=70.84 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+|.|||||||++..|+..|. .+ ..+++.|.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~--~~~~~~g~ 37 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-ED--YKIVNFGD 37 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cC--CeEEecch
Confidence 46899999999999999999998774 13 33455543
No 453
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.62 E-value=7.4e-05 Score=69.63 Aligned_cols=44 Identities=36% Similarity=0.468 Sum_probs=40.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.++.+|-|.|++||||||+++.|...|..+|+.+.+.+.|.-|.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 34679999999999999999999999999999999999988665
No 454
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.62 E-value=0.00049 Score=64.96 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.+|+|.|++||||||++..|+.+|...|++|.++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 479999999999999999999999999999877654
No 455
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.62 E-value=0.00015 Score=66.05 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHH
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa 122 (495)
++.+.+.|.+++.. .+....++++|.+|+||||+++.|.
T Consensus 84 i~~L~~~l~~~~~~--------~~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 84 TKILRRTIKELAKI--------DGKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred HHHHHHHHHHHHhh--------cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 35566666666542 1223457999999999999999998
No 456
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00015 Score=73.11 Aligned_cols=180 Identities=19% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHH-------HcCCceEEEeccC--CcchhHHHHHhhhhhcCcceeccCCCCChHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ-------KKGWKPALVCADT--FRAGAFDQLKQNATKAKIPFYGSYTESDPVR 170 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~-------~~G~kVaIVs~D~--~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ 170 (495)
..-.|.+||.---||||++.+|..-+. ++|-.+-+--+|. |+...-.+-..+.++..++..+..+ +
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~-----~ 83 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAET-----E 83 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCc-----c
Confidence 345699999999999999999995332 1232222222221 1110000001222222222111111 0
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc----ccHHHH-HHHHhccCCceE
Q 011010 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG----QAAFDQ-AQAFKQSVSVGA 245 (495)
Q Consensus 171 ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g----~~~~~~-~~~f~~~~~~~~ 245 (495)
+ --.+-|||.||. +.+|.-| +..+. --|..++|+.|... |..... +...-. ++-..
T Consensus 84 --------l---~R~VSfVDaPGH----e~LMATM--LsGAA-lMDgAlLvIaANEpcPQPQT~EHl~AleIig-ik~ii 144 (415)
T COG5257 84 --------L---VRRVSFVDAPGH----ETLMATM--LSGAA-LMDGALLVIAANEPCPQPQTREHLMALEIIG-IKNII 144 (415)
T ss_pred --------E---EEEEEEeeCCch----HHHHHHH--hcchh-hhcceEEEEecCCCCCCCchHHHHHHHhhhc-cceEE
Confidence 0 124679999996 4666665 22222 35888999999742 222211 111111 22247
Q ss_pred EEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 246 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 246 vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
++=||+|+.++..+.-+.... . .|+- ...-.-.|..++|+..+.+ ++.|++.+.+.+|
T Consensus 145 IvQNKIDlV~~E~AlE~y~qI-k---~Fvk-----Gt~Ae~aPIIPiSA~~~~N-IDal~e~i~~~Ip 202 (415)
T COG5257 145 IVQNKIDLVSRERALENYEQI-K---EFVK-----GTVAENAPIIPISAQHKAN-IDALIEAIEKYIP 202 (415)
T ss_pred EEecccceecHHHHHHHHHHH-H---HHhc-----ccccCCCceeeehhhhccC-HHHHHHHHHHhCC
Confidence 788999998764332211110 0 0000 0112334788999999999 9999999999996
No 457
>PRK05439 pantothenate kinase; Provisional
Probab=97.61 E-value=0.00016 Score=73.94 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCC-cc
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTF-RA 142 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~-R~ 142 (495)
.+.+.+|+|.|+|||||||++..|+..+.+ .+.+|.+++.|-| .+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 345789999999999999999999998876 3789999999865 44
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.61 E-value=0.00016 Score=72.55 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC--CcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT--FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~--~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
+.+.|++.||+|||||||++.+..|+-+...+..|.=-|| |......-|..+-+ -+.| ..-...|+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QRE----------vG~d-T~sF~~aLr 192 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQRE----------VGRD-TLSFANALR 192 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHH----------hccc-HHHHHHHHH
Confidence 3467999999999999999999999988655555555565 22211111111100 0111 122345677
Q ss_pred HHhhcCCcEEEEe
Q 011010 178 TFKKENCDLIIVD 190 (495)
Q Consensus 178 ~~~~~~~dvviID 190 (495)
.+.++++|+|||-
T Consensus 193 aALReDPDVIlvG 205 (353)
T COG2805 193 AALREDPDVILVG 205 (353)
T ss_pred HHhhcCCCEEEEe
Confidence 7778899999974
No 459
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.61 E-value=0.0013 Score=70.30 Aligned_cols=137 Identities=20% Similarity=0.291 Sum_probs=77.8
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccC-Cc-chhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH-H
Q 011010 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADT-FR-AGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE-T 178 (495)
Q Consensus 103 vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~-~R-~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~-~ 178 (495)
.++|+|.. |+||||.+..|+.+|.++|.+|.-..+.+ |. |.-.... .+.+.. .-||.-...+.+. .
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD~~~~~~~------~g~~~~----nld~~~~~~~~i~~~ 72 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFIDPSHHEAV------AGRPSR----TLDPWLSGEDGMRRN 72 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCCHHHHHHH------hCCCcc----cCChhhCCHHHHHHH
Confidence 36777776 99999999999999999999887665532 21 2111111 112211 1222222222222 2
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH-HHH---HHHhc----cCCceEEEEeC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF-DQA---QAFKQ----SVSVGAVIVTK 250 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~-~~~---~~f~~----~~~~~~vIlTK 250 (495)
+....+|++||.-+|-.-.... ....++...+ +. -+++|+|+..+.... ..+ ..|.. .+++.+||+|+
T Consensus 73 ~~~~~~d~~vIEG~gGl~dg~~--~s~adla~~l-~~-PviLVv~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~ 148 (433)
T PRK13896 73 YYRGEGDICVVEGVMGLYDGDV--SSTAMVAEAL-DL-PVVLVVDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQR 148 (433)
T ss_pred HHhhcCCEEEEECCCccccCCC--CCHHHHHHHH-CC-CEEEEEcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEC
Confidence 2233589999998764322110 0123344444 22 389999988663222 222 23443 57889999999
Q ss_pred ccC
Q 011010 251 MDG 253 (495)
Q Consensus 251 ~D~ 253 (495)
+..
T Consensus 149 ~~~ 151 (433)
T PRK13896 149 AHG 151 (433)
T ss_pred CCc
Confidence 975
No 460
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=97.61 E-value=8.4e-05 Score=72.64 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.|.+-|..||||||..+.||..+++-+.+|+||+.||-.
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 4577778889999999999999999999999999999843
No 461
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.61 E-value=0.01 Score=63.27 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC-CCh--HHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDP--VRIAVEGVE 177 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~-~dp--~~ia~~~l~ 177 (495)
..++|.|+||+||||++..+|..++ ++|++|+++|.+--.-.-...+ .+...+++....... .+. ......++.
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998887 6799999999874211111111 123334443221111 111 122333444
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC---c---cccH-------HHHHHHHhccCCce
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS---I---GQAA-------FDQAQAFKQSVSVG 244 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~---~---g~~~-------~~~~~~f~~~~~~~ 244 (495)
.+. +.++.|.|+|+... +.+...++++... ..+.-++|||.- . +.+. ...++.+....++.
T Consensus 273 ~l~--~~~l~i~d~~~~t~--~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~ 346 (421)
T TIGR03600 273 RLS--EKDLYIDDTGGLTV--AQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVP 346 (421)
T ss_pred HHh--cCCEEEECCCCCCH--HHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 443 45777778877532 2333334433322 123457788853 1 1111 11233444455666
Q ss_pred EEEEeCcc
Q 011010 245 AVIVTKMD 252 (495)
Q Consensus 245 ~vIlTK~D 252 (495)
+++++.+-
T Consensus 347 Vi~lsQln 354 (421)
T TIGR03600 347 VVLLAQLN 354 (421)
T ss_pred EEEecccC
Confidence 77777653
No 462
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.61 E-value=0.00032 Score=67.50 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa 122 (495)
.|+++|.+||||||+++.++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 463
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.60 E-value=6.1e-05 Score=74.59 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa 122 (495)
.+++|+|++||||||++|+|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999999
No 464
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00042 Score=76.31 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+..+++|.|.--+|||-++.++- +.+|---.+ -..+.+.+..|++..+ +.--...+...
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir------~tNVqegea-----------ggitqqIgAt~fp~~n----i~e~tk~~~~~ 532 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIR------GTNVQEGEA-----------GGITQQIGATYFPAEN----IREKTKELKKD 532 (1064)
T ss_pred CCceEEEeecccccchHHHHHhh------ccccccccc-----------cceeeeccccccchHH----HHHHHHHHHhh
Confidence 35689999999999999999997 444432221 1111122222222110 00000111111
Q ss_pred h---hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCccCC
Q 011010 180 K---KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 180 ~---~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D~~ 254 (495)
. ..-+-+++|||||.... .-++.-.. .-||..++|+|.+.|.+. ...+..++.+.-+.+|.|||+|..
T Consensus 533 ~K~~~kvPg~lvIdtpghEsF-----tnlRsrgs--slC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 533 AKKRLKVPGLLVIDTPGHESF-----TNLRSRGS--SLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhcCCCeeEEecCCCchhh-----hhhhhccc--cccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 1 11345789999995322 12222222 268999999999987543 333444444444569999999963
Q ss_pred C-----CccchhHHHHhcC-------------CCeEEeccCCCc------ccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 255 A-----KGGGALSAVAATK-------------SPVIFIGTGEHM------DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 255 ~-----~~g~~ls~~~~~~-------------~PI~fi~~Ge~i------~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
- ........+.... +-+.|-..|-+. .+...|...++.|+++|.| +-+|+-.+.+
T Consensus 606 Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeG-ipdLl~llv~ 684 (1064)
T KOG1144|consen 606 YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEG-IPDLLLLLVQ 684 (1064)
T ss_pred cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCC-cHHHHHHHHH
Confidence 2 1111211111100 001111111111 1223344567899999999 9998888766
Q ss_pred h
Q 011010 311 V 311 (495)
Q Consensus 311 ~ 311 (495)
.
T Consensus 685 l 685 (1064)
T KOG1144|consen 685 L 685 (1064)
T ss_pred H
Confidence 4
No 465
>PHA00729 NTP-binding motif containing protein
Probab=97.58 E-value=0.00029 Score=68.76 Aligned_cols=24 Identities=42% Similarity=0.339 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.|+|+|+||+||||++.+|+..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 466
>PF13245 AAA_19: Part of AAA domain
Probab=97.57 E-value=0.00017 Score=58.37 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc----CCceEEEeccCCcchhHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVCADTFRAGAFDQLK 149 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~----G~kVaIVs~D~~R~~a~dqL~ 149 (495)
.+++|.|+||+||||++..++.++... +.+|++++. .-.|.+.+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~---t~~aa~~l~ 59 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP---TRAAADELR 59 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC---CHHHHHHHH
Confidence 357779999999998888888888754 788888876 444445543
No 467
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.57 E-value=0.00023 Score=71.71 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh
Q 011010 75 IQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK 154 (495)
Q Consensus 75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~ 154 (495)
+...+..+|....+... ....++|+|-||+||||++|++...-.+++ +.+.|.+ +++-|+
T Consensus 125 il~~~~~~l~r~irt~~--------~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~vG~-----------~pGVT~ 184 (335)
T KOG2485|consen 125 ILTILSEELVRFIRTLN--------SEYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARVGA-----------EPGVTR 184 (335)
T ss_pred HHHHHHHHHHHhhcccC--------CceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceeccC-----------CCCcee
Confidence 34445555555554311 134699999999999999998887555544 7777766 333333
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcc
Q 011010 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 155 ~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~ 197 (495)
.--..+- . .+..++-++||||....
T Consensus 185 ~V~~~ir-i-----------------~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 185 RVSERIR-I-----------------SHRPPVYLIDTPGILVP 209 (335)
T ss_pred eehhheE-e-----------------ccCCceEEecCCCcCCC
Confidence 2111011 0 13567899999998655
No 468
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00042 Score=66.21 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.|.+.|+|||||||+++.||..|.+++++|..++.|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 5889999999999999999999999999999999964
No 469
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00012 Score=67.59 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+++++|-|||||||.++.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5689999999999999999988655
No 470
>PRK09354 recA recombinase A; Provisional
Probab=97.55 E-value=0.0011 Score=68.79 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
..++.|.|++|+||||++..++...++.|.+++.|++.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 35789999999999999999999999999999999884
No 471
>PRK08233 hypothetical protein; Provisional
Probab=97.55 E-value=0.00017 Score=67.12 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|+|.|+|||||||++..|+.+|.. ..++..|.|+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~----~~~~~~d~~~ 39 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN----SKALYFDRYD 39 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC----CceEEECCEE
Confidence 468999999999999999999976632 2445555554
No 472
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.55 E-value=0.011 Score=63.18 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=65.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC-CChHHH--HHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVRI--AVEGVE 177 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~-~dp~~i--a~~~l~ 177 (495)
..++|.|+||+||||++..++..++. .|++|++++.+--.--....+. +...+++....... -...+. ...+..
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~--~~~~~v~~~~~~~g~l~~~~~~~~~~a~~ 273 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRML--SSESRVDSQKLRTGKLSDEDWEKLTSAAG 273 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHH--HHhcCCCHHHhccCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998875 6999999999753332222222 22223332211111 111111 233344
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDS 224 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa 224 (495)
.+. ...+.|.|+++.. -..+...++++.... .+ -++|||.
T Consensus 274 ~l~--~~~l~i~d~~~~~--~~~i~~~i~~~~~~~-~~--~~vvID~ 313 (434)
T TIGR00665 274 KLS--EAPLYIDDTPGLT--ITELRAKARRLKREH-GL--GLIVIDY 313 (434)
T ss_pred HHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhc-CC--CEEEEcc
Confidence 443 3566777887653 233444444444333 34 4777885
No 473
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.54 E-value=0.00013 Score=70.14 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++.+|+|+|++||||||++..|+..+ .+..+.+++.|.|-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 46799999999999999999999887 45689999998763
No 474
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00077 Score=67.44 Aligned_cols=126 Identities=22% Similarity=0.218 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH--hhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--QNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~--~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
-.|..+|.-.-|||||.+++...|+++|...+. +++|+. +.....+|.+..... +.
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~---------~y~~id~aPeEk~rGITIntahv-------------ey 70 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAK---------AYDQIDNAPEEKARGITINTAHV-------------EY 70 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhcccccc---------chhhhccCchHhhcCceecccee-------------EE
Confidence 358889999999999999999999987633221 122221 122223333222111 01
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
....-.|-.||+||.. ++..-| +..+. +.|..++|+.|..|.- -..++.+-.-.++...+.+||+|....
T Consensus 71 et~~rhyahVDcPGHa----DYvKNM--ItgAa-qmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 71 ETANRHYAHVDCPGHA----DYVKNM--ITGAA-QMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred ecCCceEEeccCCChH----HHHHHH--hhhHH-hcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc
Confidence 1234567899999973 333333 33444 7899999999986642 222222111124556788999998753
No 475
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.54 E-value=9.8e-05 Score=71.95 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~ 140 (495)
+|+|+|++||||||++..|+..+.. .+.+|.+++.|-|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4889999999999999999999875 5678999999876
No 476
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.52 E-value=0.00067 Score=61.31 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~ 143 (495)
+++|+|+|||||||++..|+..+ ...+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccH
Confidence 37899999999999999999642 4567899998875
No 477
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.52 E-value=0.0015 Score=67.58 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEeccCCc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~~R 141 (495)
++|+|++|+||||++..|+.+|. ..|++|++++.|-|-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 67899999999999999999998 579999999999754
No 478
>COG4240 Predicted kinase [General function prediction only]
Probab=97.52 E-value=0.00037 Score=67.47 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=38.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC-CceEEEeccCC
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTF 140 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G-~kVaIVs~D~~ 140 (495)
.++|-++.|.|++||||||++..|-..|+.+| ++++-.|.|-+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 46688999999999999999999999999987 79998888753
No 479
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.52 E-value=0.00016 Score=66.98 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.++.|+|++|+||||++.+|+..|..+|++|+++..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 479999999999999999999999999999999987653
No 480
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.52 E-value=0.0017 Score=63.42 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~ 139 (495)
.+++|.|+||+||||++..++..+..+ |.+|+.++.+-
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 479999999999999999999998887 99999999975
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.50 E-value=0.00017 Score=67.68 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+.++.|+|++||||||++.+|...|..+|.+|+.|..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 456899999999999999999999999889999998763
No 482
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.50 E-value=0.0016 Score=70.23 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=76.1
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccC-CcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 104 I~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~-~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
++|+|.. ||||||++..|+.+|+++|.+|....+-+ |.-..+..........++..+. .+ .+.+.+.+..+ .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~~g~~~~~ld~~~----~~-~~~i~~~~~~~-~ 75 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQATGRPSRNLDSFF----MS-EAQIQECFHRH-S 75 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHHhCCchhhCCccc----CC-HHHHHHHHHHh-c
Confidence 6777776 89999999999999999999998776521 1100111000000001111111 11 23344444444 3
Q ss_pred cCCcEEEEeCCCCCc-----c-hHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-ccHHHH---HHHHhccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHK-----Q-EAALFEEMRQVSEATVNPDLVIFVMDSSIG-QAAFDQ---AQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~-----~-~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~~~~~---~~~f~~~~~~~~vIlTK~ 251 (495)
.++|++||.-+|-.. . +.... .++.+.+ +. -+++|+|+..- ...... ...+...+++.++|+|++
T Consensus 76 ~~~D~viVEGagGl~~g~~p~~~~~s~---adlAk~l-~~-pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v 150 (449)
T TIGR00379 76 KGTDYSIIEGVRGLYDGISAITDYGST---ASVAKAL-DA-PIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRV 150 (449)
T ss_pred ccCCEEEEecCCccccCCCCCCCCccH---HHHHHHh-CC-CEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECC
Confidence 478999999875221 1 11111 2244444 22 47888887642 222222 223444567889999999
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
+..
T Consensus 151 ~~~ 153 (449)
T TIGR00379 151 GSE 153 (449)
T ss_pred CCH
Confidence 753
No 483
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.49 E-value=0.00012 Score=67.77 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+.++.|+|..|||||||+.+|...|..+|++|++|-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 3589999999999999999999999999999999987
No 484
>PLN00023 GTP-binding protein; Provisional
Probab=97.49 E-value=0.0004 Score=71.31 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa 122 (495)
..|+++|..||||||++..+.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~ 42 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIV 42 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 469999999999999999998
No 485
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.49 E-value=0.00017 Score=75.23 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=53.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcC-cceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK-IPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~-i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+.|||+|||||||+.|.|. +.++.-+.. -+++|..- +-..... ..-.+........-+.
T Consensus 4 k~GivGlPn~GKSTlfnaLT------~~~~~~~a~-----------ypftTi~p~~g~v~v~--d~r~d~L~~~~~~~~~ 64 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATT------NLLGNEAAN-----------PPFTTIEPNAGVVNPS--DPRLDLLAIYIKPEKV 64 (368)
T ss_pred eEEEECCCCCChHHHHHHHh------CCCccccCC-----------CCCCCCCCceeEEEec--hhHHHHHHHHhCCcCc
Confidence 48899999999999999999 554411111 11221110 0000000 0001111111111111
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~ 225 (495)
....+.++|.||.......- +.+ .++...++.+|.++.|+|+.
T Consensus 65 ~~a~i~~~DiaGlv~gAs~g-~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 65 PPTTTEFVDIAGLVGGASKG-EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred CCceEEEEeccccccchhcc-cCcchHHHHHHHhCCEEEEEEeCC
Confidence 24568999999985432211 111 33445555889999999985
No 486
>PRK08506 replicative DNA helicase; Provisional
Probab=97.49 E-value=0.016 Score=62.89 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC-CChH--HHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPV--RIAVEGVET 178 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~-~dp~--~ia~~~l~~ 178 (495)
..++|.|+||+||||++..+|..+.++|++|+++|.+--...-...+ .+...++++...... -+.. .....++..
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rl--la~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRM--LSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999888899999999975222112221 122234443221111 1111 123344444
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDS 224 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa 224 (495)
+. ...+.|.|+|+.. -..+...++++... ..+.-++|||.
T Consensus 271 l~--~~~l~I~d~~~~t--i~~I~~~~r~l~~~--~~~~~lvvIDy 310 (472)
T PRK08506 271 LS--KKKLFVYDSGYVN--IHQVRAQLRKLKSQ--HPEIGLAVIDY 310 (472)
T ss_pred HH--cCCeEEECCCCCC--HHHHHHHHHHHHHh--CCCCCEEEEcC
Confidence 43 4567778887653 22344444444332 23456777886
No 487
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.48 E-value=0.00014 Score=76.26 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
++.+|.|+|.+||||||++.+|...|.++|++|++|..|.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 3569999999999999999999999999999999999754
No 488
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.48 E-value=0.00011 Score=74.09 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAY 123 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~ 123 (495)
.++.+|+|.+|||||||+|+|+-
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCc
Confidence 35899999999999999999993
No 489
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.48 E-value=0.00013 Score=76.32 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++|||.+||||||++|.|....... .+++-++. .+.+|+.-+.+..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~-~~~~~~s~-----------~pgtT~~~~~~~~-------------------- 202 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGD-KDVITTSP-----------FPGTTLDLIEIPL-------------------- 202 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCC-cceeeecC-----------CCCeEeeEEEEEe--------------------
Confidence 369999999999999999999432111 13444554 4555554332211
Q ss_pred cCCcEEEEeCCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~ 197 (495)
+-++.|+||||+...
T Consensus 203 -~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 203 -DDGHSLYDTPGIINS 217 (360)
T ss_pred -CCCCEEEECCCCCCh
Confidence 224579999998654
No 490
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=0.00012 Score=63.46 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+|+|+|+|||||||++..|+..+ | ..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---G--FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---T--CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---C--CeEEEecc
Confidence 58999999999999999999765 3 44556654
No 491
>PLN02796 D-glycerate 3-kinase
Probab=97.48 E-value=0.00057 Score=70.65 Aligned_cols=42 Identities=33% Similarity=0.436 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+|.+|+|+|++||||||++..|...+...|.++..++.|-|-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 467899999999999999999999988778889999887654
No 492
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.47 E-value=0.00038 Score=69.51 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+|+|+|.+||||||++.+|+..|.+.|.++++++.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 4899999999999999999999998899999999998766
No 493
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00045 Score=71.44 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
+|..-.+++||..|.||||++|.|...-......+....+++-+ ...+..+....+.+
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~------------t~~i~~~~~~iee~---------- 75 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKE------------TVEIESTKVEIEEN---------- 75 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccc------------cceeeeeeeeecCC----------
Confidence 44556799999999999999999983311111111111111100 01111111111111
Q ss_pred HHhhcCCcEEEEeCCCCCcc------hHHHHHHH----HHHH-------H-Hhc--CCCEEEEEeeCC-ccccHHH--HH
Q 011010 178 TFKKENCDLIIVDTSGRHKQ------EAALFEEM----RQVS-------E-ATV--NPDLVIFVMDSS-IGQAAFD--QA 234 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~------~~~l~~el----~~i~-------~-~i~--~~d~vllVvDa~-~g~~~~~--~~ 234 (495)
.-...+.+|||||+... -......+ .++. + ... ..+.+||.+.++ .|-...+ ..
T Consensus 76 ---g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M 152 (366)
T KOG2655|consen 76 ---GVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM 152 (366)
T ss_pred ---CeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH
Confidence 01356789999997211 01111111 1111 1 111 456788888876 3444444 56
Q ss_pred HHHhccCCceEEEEeCccCCCCcc------chhHHHHhcCCCeEEec
Q 011010 235 QAFKQSVSVGAVIVTKMDGHAKGG------GALSAVAATKSPVIFIG 275 (495)
Q Consensus 235 ~~f~~~~~~~~vIlTK~D~~~~~g------~~ls~~~~~~~PI~fi~ 275 (495)
+.+...+++ +-|+.|.|...+.. .....+....++|....
T Consensus 153 k~l~~~vNi-IPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp 198 (366)
T KOG2655|consen 153 KKLSKKVNL-IPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFP 198 (366)
T ss_pred HHHhccccc-cceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCC
Confidence 777777776 77899999866531 12233344555655444
No 494
>PRK15453 phosphoribulokinase; Provisional
Probab=97.47 E-value=0.00054 Score=68.92 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++.+|+|+|.+||||||++..|+..|...+.++++++.|.|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3568999999999999999999998888788899999998764
No 495
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.46 E-value=8.3e-05 Score=72.66 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
-..|+++|.|-|||||++.++...-.+ ..+ .++|..-||-...+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~y-------------------eFTTLtcIpGvi~y---------------- 106 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASY-------------------EFTTLTCIPGVIHY---------------- 106 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhce-------------------eeeEEEeecceEEe----------------
Confidence 457999999999999999999832211 111 12222223222222
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA 229 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~ 229 (495)
.+..+-++|.||+-.....--..-+++.+....+|.+++|+||+...+
T Consensus 107 --~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 107 --NGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSED 154 (364)
T ss_pred --cCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchh
Confidence 267789999999854432211112334444458999999999986543
No 496
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.46 E-value=0.00051 Score=80.22 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=63.5
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhccCCceEEEEeCccCCCCcc---
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG--- 258 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g--- 258 (495)
+.+.|+||||.... ..+. ......+|.+++|+|++.+. .....+......-.+..+|+||+|......
T Consensus 526 p~i~fiDTPGhe~F-----~~lr--~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 526 PGLLFIDTPGHEAF-----TSLR--KRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred CcEEEEECCCcHHH-----HHHH--HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCcccccccc
Confidence 45899999995321 1121 11223689999999998642 222223333322234699999999853110
Q ss_pred --c-----------hhHH-----------HHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHH
Q 011010 259 --G-----------ALSA-----------VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 310 (495)
Q Consensus 259 --~-----------~ls~-----------~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~ 310 (495)
. .... +...|...... ..++++....|.+++|+++|.| ++.|++.+..
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~---~~~~d~~~~v~iVpVSA~tGeG-Id~Ll~~l~~ 670 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRF---DRVQDFTRTVAIVPVSAKTGEG-IPELLMMVAG 670 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhh---hhhhhcCCCceEEEEEcCCCCC-HHHHHHHHHH
Confidence 0 0000 01111100000 0123344455778899999999 9999987754
No 497
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.00035 Score=60.93 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
|+|.|+||+||||++..+|.++ +..+.-+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 6789999999999999999776 455555555
No 498
>PRK13695 putative NTPase; Provisional
Probab=97.46 E-value=0.008 Score=55.93 Aligned_cols=31 Identities=35% Similarity=0.415 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceE
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa 133 (495)
.|+|+|++|+||||++..++..+...|.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4899999999999999999988887787754
No 499
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.45 E-value=0.00065 Score=66.76 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.+.|.|++|+|||+++..++.++..+|++|..++.|.+... ..+.++.+ .
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~----------------------------~~~~~~~~--~ 96 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF----------------------------VPEVLEGM--E 96 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh----------------------------hHHHHHHh--h
Confidence 58999999999999999999998888999998887421000 00111122 2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHH
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEA 211 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~ 211 (495)
.+|+++||-.++...+....+++..+...
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~ 125 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNR 125 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHH
Confidence 47899999988765554444555445433
No 500
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.45 E-value=0.0056 Score=59.91 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=76.6
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCc---------chhHHHHHhhhhhc-C----cceeccCC---
Q 011010 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---------AGAFDQLKQNATKA-K----IPFYGSYT--- 164 (495)
Q Consensus 103 vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R---------~~a~dqL~~~a~~~-~----i~~~~~~~--- 164 (495)
.+.|+|. +|+|||+++..|+.+|.++|.+|...-+=..+ ......+....... . .|+.....
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 4777775 59999999999999999999988865431111 11112222211100 0 01000000
Q ss_pred --CCChH--HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHh
Q 011010 165 --ESDPV--RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFK 238 (495)
Q Consensus 165 --~~dp~--~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~ 238 (495)
...+. +...+.++.+ ...+|+||||.+|.....-.-...+..+.... .-.+++|++...|.- +.-..+.+.
T Consensus 84 ~~~~~~i~~~~i~~~~~~l-~~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~--~~pvilV~~~~lg~in~~lLt~~~l~ 160 (231)
T PRK12374 84 VAHSCPINYTLMSNGLANL-SEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQE--QLPVLMVVGIQEGCINHALLTAQAIA 160 (231)
T ss_pred HHcCCcCCHHHHHHHHHHH-HhhCCEEEEECCCCcceeccCcccHHHHHHHh--CCCEEEEECCCcChHHHHHHHHHHHH
Confidence 11111 2234444443 36899999999983211100000011122222 234677777665541 112233343
Q ss_pred c-cCCceEEEEeCccCC
Q 011010 239 Q-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 239 ~-~~~~~~vIlTK~D~~ 254 (495)
. .+.+.++|+|+++..
T Consensus 161 ~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 161 NDGLPLIGWVANRINPG 177 (231)
T ss_pred hCCCcEEEEEEeCccCc
Confidence 3 467889999999864
Done!