Query 011010
Match_columns 495
No_of_seqs 526 out of 3916
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 3.4E-95 1.1E-99 766.1 44.2 436 1-448 1-438 (443)
2 2j37_W Signal recognition part 100.0 3.5E-93 1.2E-97 764.0 25.3 480 1-484 1-490 (504)
3 3kl4_A SRP54, signal recogniti 100.0 2E-89 6.9E-94 722.0 38.9 423 8-434 4-433 (433)
4 2xxa_A Signal recognition part 100.0 8.9E-83 3E-87 673.8 41.0 430 2-435 1-432 (433)
5 2ffh_A Protein (FFH); SRP54, s 100.0 6.8E-82 2.3E-86 663.8 45.3 418 2-435 1-418 (425)
6 2v3c_C SRP54, signal recogniti 100.0 2.3E-80 8E-85 655.1 29.3 425 3-434 1-427 (432)
7 1j8m_F SRP54, signal recogniti 100.0 2.4E-45 8.2E-50 370.3 32.8 293 4-298 1-296 (297)
8 3e70_C DPA, signal recognition 100.0 4.9E-43 1.7E-47 357.8 29.7 296 2-299 7-326 (328)
9 1ls1_A Signal recognition part 100.0 2.3E-41 7.8E-46 340.9 34.0 295 2-299 1-295 (295)
10 1zu4_A FTSY; GTPase, signal re 100.0 3.2E-41 1.1E-45 343.5 30.5 288 3-301 11-313 (320)
11 1vma_A Cell division protein F 100.0 3.8E-41 1.3E-45 340.7 30.4 273 8-298 28-306 (306)
12 2og2_A Putative signal recogni 100.0 9.3E-39 3.2E-43 329.5 32.3 290 1-297 55-359 (359)
13 1rj9_A FTSY, signal recognitio 100.0 2.8E-39 9.7E-44 326.9 24.4 284 2-297 3-303 (304)
14 2yhs_A FTSY, cell division pro 100.0 7.2E-39 2.5E-43 340.2 27.9 289 3-299 196-496 (503)
15 3b9q_A Chloroplast SRP recepto 100.0 2E-36 6.9E-41 305.7 31.2 286 4-297 8-302 (302)
16 2jqe_A SRP54, signal recogniti 100.0 1.8E-37 6.1E-42 268.4 5.1 112 321-435 2-114 (119)
17 1hq1_A Signal recognition part 100.0 1.4E-36 4.8E-41 257.2 6.9 105 328-435 1-105 (105)
18 1mfq_C SRP54, signal recogniti 100.0 7.7E-36 2.6E-40 260.5 7.8 110 325-435 11-124 (129)
19 2px0_A Flagellar biosynthesis 100.0 2.8E-33 9.6E-38 282.0 23.5 258 25-297 35-296 (296)
20 1qb2_A SRP54, human signal rec 100.0 4.1E-35 1.4E-39 250.1 6.8 105 328-433 1-109 (109)
21 1dul_A Signal recognition part 99.9 3.4E-25 1.2E-29 173.0 6.7 64 368-433 6-69 (69)
22 3iev_A GTP-binding protein ERA 99.9 8.8E-26 3E-30 228.3 3.6 253 98-421 7-279 (308)
23 1wf3_A GTP-binding protein; GT 99.9 4E-24 1.4E-28 215.7 1.4 248 100-421 6-269 (301)
24 1ega_A Protein (GTP-binding pr 99.9 1.2E-22 3.9E-27 204.8 3.3 250 100-421 7-270 (301)
25 3p32_A Probable GTPase RV1496/ 99.7 4E-17 1.4E-21 167.9 10.1 191 100-313 78-283 (355)
26 3geh_A MNME, tRNA modification 99.7 9.8E-18 3.4E-22 178.3 3.5 233 8-314 148-384 (462)
27 3gee_A MNME, tRNA modification 99.7 4.2E-18 1.4E-22 181.8 0.0 234 8-313 156-397 (476)
28 2www_A Methylmalonic aciduria 99.6 9.1E-15 3.1E-19 150.1 12.8 188 101-313 74-278 (349)
29 1xzp_A Probable tRNA modificat 99.6 2E-16 7E-21 169.0 -0.2 230 9-312 169-403 (482)
30 1yrb_A ATP(GTP)binding protein 99.6 1E-14 3.5E-19 142.0 11.1 206 100-312 13-255 (262)
31 2p67_A LAO/AO transport system 99.6 1.3E-14 4.4E-19 148.5 12.0 190 100-312 55-259 (341)
32 1jwy_B Dynamin A GTPase domain 99.5 6.7E-14 2.3E-18 140.2 14.2 120 183-315 130-263 (315)
33 2qm8_A GTPase/ATPase; G protei 99.5 7.3E-14 2.5E-18 142.7 10.9 189 100-313 54-260 (337)
34 2aka_B Dynamin-1; fusion prote 99.5 2.8E-13 9.6E-18 134.4 14.2 145 183-340 124-286 (299)
35 2wsm_A Hydrogenase expression/ 99.5 1E-13 3.4E-18 131.4 9.4 180 101-313 30-213 (221)
36 2hjg_A GTP-binding protein ENG 99.5 1E-13 3.4E-18 146.3 9.9 158 103-314 5-165 (436)
37 4dhe_A Probable GTP-binding pr 99.5 1.1E-13 3.9E-18 130.9 9.2 169 101-316 29-213 (223)
38 3i8s_A Ferrous iron transport 99.4 6E-13 2E-17 131.9 10.6 160 101-315 3-170 (274)
39 1mky_A Probable GTP-binding pr 99.4 5.1E-13 1.7E-17 141.0 10.2 159 103-313 3-165 (439)
40 3pqc_A Probable GTP-binding pr 99.4 1.4E-12 4.7E-17 119.9 11.8 160 101-313 23-193 (195)
41 3zvr_A Dynamin-1; hydrolase, D 99.4 3E-12 1E-16 142.8 16.0 146 183-340 149-311 (772)
42 3iby_A Ferrous iron transport 99.4 1.1E-12 3.7E-17 128.9 11.1 154 103-311 3-164 (256)
43 4dcu_A GTP-binding protein ENG 99.4 5.4E-13 1.9E-17 141.5 9.3 158 102-313 24-184 (456)
44 2dyk_A GTP-binding protein; GT 99.4 2.3E-12 8E-17 114.7 11.9 156 103-313 3-161 (161)
45 1svi_A GTP-binding protein YSX 99.4 7.3E-12 2.5E-16 115.6 14.8 160 101-312 23-193 (195)
46 2qpt_A EH domain-containing pr 99.4 1.3E-13 4.5E-18 149.6 2.4 173 185-405 155-339 (550)
47 2hjg_A GTP-binding protein ENG 99.4 2.5E-12 8.4E-17 135.6 11.8 188 76-312 152-347 (436)
48 2gj8_A MNME, tRNA modification 99.4 2.7E-12 9.1E-17 117.4 10.5 156 101-313 4-165 (172)
49 4dzz_A Plasmid partitioning pr 99.3 1.2E-11 4.1E-16 115.6 14.9 151 102-271 2-161 (206)
50 3bfv_A CAPA1, CAPB2, membrane 99.3 2.6E-11 9E-16 120.0 17.8 147 100-255 81-258 (271)
51 3cio_A ETK, tyrosine-protein k 99.3 4.8E-11 1.6E-15 119.8 19.9 147 101-256 104-281 (299)
52 3la6_A Tyrosine-protein kinase 99.3 5.6E-11 1.9E-15 118.6 20.1 148 100-256 91-269 (286)
53 2x2e_A Dynamin-1; nitration, h 99.3 2E-12 6.8E-17 132.6 9.4 145 183-340 129-291 (353)
54 4dcu_A GTP-binding protein ENG 99.3 6.6E-12 2.2E-16 133.1 13.5 185 77-312 173-367 (456)
55 2xtp_A GTPase IMAP family memb 99.3 4.8E-12 1.7E-16 123.4 10.6 172 100-313 21-207 (260)
56 2e87_A Hypothetical protein PH 99.3 1.5E-11 5.1E-16 126.3 14.0 160 100-312 166-334 (357)
57 3end_A Light-independent proto 99.3 3.5E-11 1.2E-15 120.3 16.3 162 100-272 40-241 (307)
58 3izq_1 HBS1P, elongation facto 99.3 5.6E-12 1.9E-16 138.4 11.2 207 9-255 40-319 (611)
59 1g3q_A MIND ATPase, cell divis 99.3 5.8E-11 2E-15 113.6 16.7 160 102-271 3-193 (237)
60 3k53_A Ferrous iron transport 99.3 1.2E-11 4.1E-16 121.8 12.0 157 102-313 4-165 (271)
61 3ea0_A ATPase, para family; al 99.3 2.8E-11 9.6E-16 116.3 13.9 147 100-256 3-187 (245)
62 1hyq_A MIND, cell division inh 99.3 4.1E-11 1.4E-15 116.8 14.6 160 102-271 3-192 (263)
63 1mky_A Probable GTP-binding pr 99.3 2.6E-11 8.8E-16 127.9 13.5 167 100-312 179-353 (439)
64 3a1s_A Iron(II) transport prot 99.3 3.1E-11 1.1E-15 118.6 13.2 156 101-312 5-165 (258)
65 2qtf_A Protein HFLX, GTP-bindi 99.3 2.8E-11 9.7E-16 124.8 13.2 186 76-312 153-352 (364)
66 3q9l_A Septum site-determining 99.3 1.3E-10 4.3E-15 112.7 16.8 144 102-254 3-186 (260)
67 3kjh_A CO dehydrogenase/acetyl 99.2 2.9E-11 9.9E-16 116.0 11.7 141 103-253 2-195 (254)
68 2ph1_A Nucleotide-binding prot 99.2 1.3E-10 4.3E-15 113.9 15.9 146 101-253 18-194 (262)
69 2wji_A Ferrous iron transport 99.2 3.2E-11 1.1E-15 109.0 10.7 155 102-312 4-163 (165)
70 2qu8_A Putative nucleolar GTP- 99.2 9.9E-11 3.4E-15 111.7 13.6 163 100-312 28-203 (228)
71 3k9g_A PF-32 protein; ssgcid, 99.2 1.9E-10 6.5E-15 112.5 15.8 145 98-254 24-210 (267)
72 2hf9_A Probable hydrogenase ni 99.2 1.4E-11 4.9E-16 116.9 7.5 180 101-312 38-222 (226)
73 2oze_A ORF delta'; para, walke 99.2 5.6E-11 1.9E-15 118.1 12.0 143 102-255 35-226 (298)
74 2j69_A Bacterial dynamin-like 99.2 3.3E-11 1.1E-15 134.2 11.4 84 32-139 17-101 (695)
75 3lxw_A GTPase IMAP family memb 99.2 5.1E-11 1.7E-15 116.1 10.1 122 100-255 20-153 (247)
76 3b1v_A Ferrous iron uptake tra 99.2 7E-11 2.4E-15 117.0 11.0 158 101-313 3-163 (272)
77 1wcv_1 SOJ, segregation protei 99.2 7.9E-11 2.7E-15 114.9 11.0 144 100-255 5-183 (257)
78 1fzq_A ADP-ribosylation factor 99.2 4.6E-10 1.6E-14 103.1 15.4 154 101-313 16-177 (181)
79 2h17_A ADP-ribosylation factor 99.2 1.6E-10 5.4E-15 105.8 12.1 153 100-311 20-180 (181)
80 1cp2_A CP2, nitrogenase iron p 99.2 3.5E-10 1.2E-14 110.5 15.0 146 102-253 2-186 (269)
81 3qq5_A Small GTP-binding prote 99.1 3.5E-11 1.2E-15 126.5 7.4 164 100-315 33-197 (423)
82 3cwq_A Para family chromosome 99.1 4.5E-10 1.5E-14 106.5 14.4 127 103-255 2-134 (209)
83 2wjg_A FEOB, ferrous iron tran 99.1 2.6E-10 8.7E-15 104.5 12.1 159 101-315 7-170 (188)
84 2nzj_A GTP-binding protein REM 99.1 1.2E-10 4.2E-15 104.8 9.6 157 101-312 4-167 (175)
85 2afh_E Nitrogenase iron protei 99.1 4.5E-10 1.5E-14 111.3 14.5 146 102-253 3-189 (289)
86 2lkc_A Translation initiation 99.1 4E-11 1.4E-15 108.5 6.2 159 101-312 8-169 (178)
87 1zj6_A ADP-ribosylation factor 99.1 5.1E-10 1.7E-14 102.8 13.5 154 101-313 16-177 (187)
88 3q85_A GTP-binding protein REM 99.1 1.1E-10 3.9E-15 104.7 8.8 154 103-312 4-165 (169)
89 1u8z_A RAS-related protein RAL 99.1 8.1E-11 2.8E-15 104.8 7.7 154 102-312 5-165 (168)
90 3q72_A GTP-binding protein RAD 99.1 9.6E-11 3.3E-15 104.8 8.1 152 103-312 4-162 (166)
91 1c1y_A RAS-related protein RAP 99.1 9.7E-11 3.3E-15 104.5 8.0 154 102-312 4-165 (167)
92 1zd9_A ADP-ribosylation factor 99.1 3.1E-10 1.1E-14 104.6 11.5 155 101-313 22-184 (188)
93 1f6b_A SAR1; gtpases, N-termin 99.1 1E-10 3.4E-15 109.3 7.9 162 101-312 25-197 (198)
94 2il1_A RAB12; G-protein, GDP, 99.1 1.4E-10 4.7E-15 107.5 8.7 156 102-312 27-188 (192)
95 1z0f_A RAB14, member RAS oncog 99.1 1.6E-10 5.4E-15 104.3 8.9 156 101-312 15-176 (179)
96 3zq6_A Putative arsenical pump 99.1 1.2E-09 4.2E-14 110.5 16.4 45 102-147 15-59 (324)
97 1upt_A ARL1, ADP-ribosylation 99.1 2.2E-10 7.5E-15 102.8 9.7 155 101-313 7-168 (171)
98 2ce2_X GTPase HRAS; signaling 99.1 1.7E-10 6E-15 102.2 8.9 150 102-312 4-163 (166)
99 2xj4_A MIPZ; replication, cell 99.1 1.3E-09 4.4E-14 108.2 16.2 114 102-225 5-136 (286)
100 4bas_A ADP-ribosylation factor 99.1 1.9E-10 6.5E-15 106.1 9.4 155 100-312 16-187 (199)
101 2a9k_A RAS-related protein RAL 99.1 1.3E-10 4.6E-15 105.6 8.3 155 101-312 18-179 (187)
102 2efe_B Small GTP-binding prote 99.1 1.2E-10 4.1E-15 105.7 7.9 158 101-314 12-175 (181)
103 1r8s_A ADP-ribosylation factor 99.1 8.1E-10 2.8E-14 98.5 13.2 152 103-313 2-161 (164)
104 3clv_A RAB5 protein, putative; 99.1 1.8E-10 6.1E-15 105.8 9.1 106 184-312 93-202 (208)
105 1ky3_A GTP-binding protein YPT 99.1 9.2E-11 3.2E-15 106.2 6.9 158 101-312 8-176 (182)
106 3tw8_B RAS-related protein RAB 99.1 4E-11 1.4E-15 108.5 4.2 156 101-312 9-169 (181)
107 4a9a_A Ribosome-interacting GT 99.1 3.1E-10 1.1E-14 117.4 11.3 117 101-253 72-194 (376)
108 1r2q_A RAS-related protein RAB 99.1 1.5E-10 5.3E-15 103.3 8.0 157 101-313 6-168 (170)
109 3cph_A RAS-related protein SEC 99.1 9.4E-11 3.2E-15 109.6 6.8 154 101-312 20-180 (213)
110 1m2o_B GTP-binding protein SAR 99.1 2E-10 6.8E-15 106.5 9.0 159 101-311 23-189 (190)
111 2y8e_A RAB-protein 6, GH09086P 99.1 1E-10 3.5E-15 105.6 6.8 156 102-313 15-176 (179)
112 3tkl_A RAS-related protein RAB 99.1 1.3E-10 4.5E-15 107.0 7.5 152 101-312 16-177 (196)
113 2cxx_A Probable GTP-binding pr 99.1 3.6E-10 1.2E-14 103.3 10.5 159 103-313 3-183 (190)
114 2hxs_A RAB-26, RAS-related pro 99.1 2E-10 6.9E-15 103.9 8.6 157 101-313 6-172 (178)
115 2fg5_A RAB-22B, RAS-related pr 99.1 1.5E-10 5.2E-15 107.1 7.9 158 101-314 23-186 (192)
116 3tr5_A RF-3, peptide chain rel 99.1 3.1E-10 1.1E-14 122.5 11.5 68 182-256 80-149 (528)
117 1moz_A ARL1, ADP-ribosylation 99.1 1.9E-10 6.7E-15 104.6 8.2 153 101-312 18-178 (183)
118 1z0j_A RAB-22, RAS-related pro 99.1 3.5E-10 1.2E-14 101.2 9.5 156 102-313 7-168 (170)
119 2erx_A GTP-binding protein DI- 99.1 2.2E-10 7.5E-15 102.5 8.2 154 102-313 4-166 (172)
120 2h57_A ADP-ribosylation factor 99.1 2.9E-10 1E-14 104.7 8.9 156 100-312 20-185 (190)
121 2b6h_A ADP-ribosylation factor 99.1 1.9E-09 6.5E-14 100.0 14.4 154 100-312 28-189 (192)
122 2bov_A RAla, RAS-related prote 99.1 3.2E-10 1.1E-14 105.2 9.1 155 101-312 14-175 (206)
123 1z2a_A RAS-related protein RAB 99.1 9.5E-11 3.2E-15 104.7 5.3 155 101-312 5-165 (168)
124 1ksh_A ARF-like protein 2; sma 99.1 8.7E-10 3E-14 100.9 11.8 155 100-313 17-179 (186)
125 3t1o_A Gliding protein MGLA; G 99.1 4.9E-10 1.7E-14 102.8 10.0 107 183-312 73-190 (198)
126 1ek0_A Protein (GTP-binding pr 99.1 2.4E-10 8.4E-15 102.0 7.7 157 102-313 4-168 (170)
127 2oil_A CATX-8, RAS-related pro 99.1 1.3E-10 4.4E-15 107.3 6.0 156 101-312 25-186 (193)
128 3bc1_A RAS-related protein RAB 99.1 2.3E-10 7.8E-15 104.6 7.6 107 183-312 69-183 (195)
129 1zbd_A Rabphilin-3A; G protein 99.1 2.6E-10 8.9E-15 106.0 8.1 154 102-312 9-169 (203)
130 3j2k_7 ERF3, eukaryotic polype 99.1 5E-10 1.7E-14 118.2 11.2 66 182-254 93-168 (439)
131 2g6b_A RAS-related protein RAB 99.0 1.7E-10 5.7E-15 104.6 6.2 156 101-312 10-172 (180)
132 1g16_A RAS-related protein SEC 99.0 2.3E-10 7.7E-15 102.4 6.8 153 102-312 4-163 (170)
133 1wms_A RAB-9, RAB9, RAS-relate 99.0 4.8E-10 1.6E-14 101.3 9.0 156 101-312 7-172 (177)
134 2h5e_A Peptide chain release f 99.0 5.2E-10 1.8E-14 120.8 10.8 134 101-256 13-149 (529)
135 1vg8_A RAS-related protein RAB 99.0 1.2E-10 4E-15 108.4 5.0 155 101-312 8-173 (207)
136 2a5j_A RAS-related protein RAB 99.0 2.4E-10 8.3E-15 105.4 7.0 155 101-312 21-182 (191)
137 1kao_A RAP2A; GTP-binding prot 99.0 1.9E-10 6.7E-15 102.2 6.1 153 102-312 4-164 (167)
138 3t5d_A Septin-7; GTP-binding p 99.0 5.4E-10 1.8E-14 110.2 9.7 173 99-313 6-203 (274)
139 2hup_A RAS-related protein RAB 99.0 6.7E-10 2.3E-14 103.8 9.7 157 101-312 29-191 (201)
140 2gf0_A GTP-binding protein DI- 99.0 5E-10 1.7E-14 103.3 8.7 155 101-314 8-171 (199)
141 3ug7_A Arsenical pump-driving 99.0 4.1E-09 1.4E-13 107.9 16.3 47 101-148 26-72 (349)
142 4dsu_A GTPase KRAS, isoform 2B 99.0 2.8E-10 9.5E-15 103.8 6.7 150 102-312 5-164 (189)
143 1pui_A ENGB, probable GTP-bind 99.0 1.1E-09 3.8E-14 102.3 10.7 163 101-314 26-199 (210)
144 3con_A GTPase NRAS; structural 99.0 3.6E-10 1.2E-14 103.8 7.2 154 101-312 21-181 (190)
145 1z08_A RAS-related protein RAB 99.0 2.4E-10 8.2E-15 102.4 5.9 156 101-312 6-167 (170)
146 2yc2_C IFT27, small RAB-relate 99.0 2.7E-10 9.3E-15 105.7 6.3 158 101-312 20-190 (208)
147 2gf9_A RAS-related protein RAB 99.0 2.3E-10 8E-15 105.3 5.8 155 101-312 22-183 (189)
148 3iqw_A Tail-anchored protein t 99.0 4.4E-09 1.5E-13 107.2 15.8 40 101-140 16-55 (334)
149 2x77_A ADP-ribosylation factor 99.0 7.5E-10 2.5E-14 101.7 9.0 155 101-313 22-183 (189)
150 2bme_A RAB4A, RAS-related prot 99.0 3.9E-10 1.3E-14 102.9 7.0 155 101-312 10-171 (186)
151 2p5s_A RAS and EF-hand domain 99.0 9.4E-10 3.2E-14 102.3 9.7 158 100-312 27-195 (199)
152 3dpu_A RAB family protein; roc 99.0 1.5E-09 5.3E-14 117.1 12.7 164 101-313 41-207 (535)
153 3fkq_A NTRC-like two-domain pr 99.0 3.5E-09 1.2E-13 109.2 14.8 146 71-226 114-293 (373)
154 2fn4_A P23, RAS-related protei 99.0 3.7E-10 1.3E-14 102.1 6.5 155 101-312 9-170 (181)
155 2bcg_Y Protein YP2, GTP-bindin 99.0 3.5E-10 1.2E-14 105.5 6.4 156 101-312 8-169 (206)
156 3sjy_A Translation initiation 99.0 1.4E-09 4.9E-14 113.3 11.6 113 184-314 75-192 (403)
157 2o52_A RAS-related protein RAB 99.0 3.8E-10 1.3E-14 105.3 6.3 155 101-312 25-186 (200)
158 3fwy_A Light-independent proto 99.0 6.3E-09 2.1E-13 105.1 15.7 162 100-272 47-248 (314)
159 2f7s_A C25KG, RAS-related prot 99.0 1.2E-09 3.9E-14 102.8 9.6 107 183-312 83-197 (217)
160 1x3s_A RAS-related protein RAB 99.0 4.1E-10 1.4E-14 103.4 6.4 153 101-313 15-177 (195)
161 1lnz_A SPO0B-associated GTP-bi 99.0 1.6E-10 5.6E-15 118.1 3.8 156 103-314 160-330 (342)
162 3dz8_A RAS-related protein RAB 99.0 2.5E-10 8.6E-15 105.4 4.7 155 101-312 23-184 (191)
163 1z06_A RAS-related protein RAB 99.0 4.9E-10 1.7E-14 103.1 6.6 157 101-312 20-186 (189)
164 1wxq_A GTP-binding protein; st 99.0 4.3E-11 1.5E-15 124.8 -1.0 101 103-227 2-114 (397)
165 2fh5_B SR-beta, signal recogni 99.0 3.8E-09 1.3E-13 99.0 12.4 114 101-256 7-130 (214)
166 2woj_A ATPase GET3; tail-ancho 99.0 6.1E-09 2.1E-13 106.9 14.9 43 102-145 19-63 (354)
167 2ged_A SR-beta, signal recogni 99.0 1.9E-09 6.4E-14 99.2 9.9 133 76-256 26-171 (193)
168 4djt_A GTP-binding nuclear pro 99.0 3.1E-10 1.1E-14 106.8 4.5 157 101-313 11-174 (218)
169 3pg5_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 107.4 14.1 43 102-144 2-45 (361)
170 4gzl_A RAS-related C3 botulinu 98.9 3.2E-10 1.1E-14 106.2 4.2 169 100-312 29-203 (204)
171 3cpj_B GTP-binding protein YPT 98.9 6.3E-10 2.1E-14 105.6 6.3 157 101-313 13-175 (223)
172 1byi_A Dethiobiotin synthase; 98.9 1.9E-08 6.6E-13 95.2 16.5 164 102-271 2-199 (224)
173 3gj0_A GTP-binding nuclear pro 98.9 6.4E-10 2.2E-14 105.1 6.1 153 101-312 15-173 (221)
174 2fv8_A H6, RHO-related GTP-bin 98.9 6.3E-10 2.2E-14 104.2 5.7 166 101-312 25-198 (207)
175 3kkq_A RAS-related protein M-R 98.9 1.5E-09 5.1E-14 98.9 8.0 155 101-312 18-180 (183)
176 2woo_A ATPase GET3; tail-ancho 98.9 1.3E-08 4.4E-13 103.4 15.8 42 102-144 20-61 (329)
177 2ew1_A RAS-related protein RAB 98.9 1.2E-09 4.2E-14 102.5 7.6 156 101-312 26-187 (201)
178 3bwd_D RAC-like GTP-binding pr 98.9 7.1E-10 2.4E-14 100.6 5.7 165 101-312 8-179 (182)
179 3t5g_A GTP-binding protein RHE 98.9 3.1E-10 1E-14 103.3 3.2 155 101-312 6-167 (181)
180 3lvq_E ARF-GAP with SH3 domain 98.9 3.2E-09 1.1E-13 113.3 11.6 154 102-313 323-483 (497)
181 2j1l_A RHO-related GTP-binding 98.9 6.8E-10 2.3E-14 104.8 5.7 167 101-312 34-207 (214)
182 2q3h_A RAS homolog gene family 98.9 1.3E-09 4.4E-14 101.1 7.5 166 101-312 20-193 (201)
183 2atv_A RERG, RAS-like estrogen 98.9 1.6E-09 5.6E-14 100.2 8.1 153 101-312 28-189 (196)
184 1ihu_A Arsenical pump-driving 98.9 8E-09 2.7E-13 112.7 14.8 48 100-148 7-54 (589)
185 3oes_A GTPase rhebl1; small GT 98.9 2.3E-10 7.7E-15 106.7 2.1 155 101-312 24-185 (201)
186 2xex_A Elongation factor G; GT 98.9 8.4E-09 2.9E-13 114.8 15.1 129 100-255 9-141 (693)
187 3lxx_A GTPase IMAP family memb 98.9 4E-09 1.4E-13 101.4 10.9 121 101-255 29-159 (239)
188 1h65_A Chloroplast outer envel 98.9 2E-09 7E-14 105.8 8.9 120 101-256 39-169 (270)
189 3reg_A RHO-like small GTPase; 98.9 7.8E-10 2.7E-14 102.1 5.4 158 101-312 23-186 (194)
190 2fu5_C RAS-related protein RAB 98.9 7.7E-10 2.6E-14 100.8 5.1 156 101-312 8-169 (183)
191 1mh1_A RAC1; GTP-binding, GTPa 98.9 5.3E-10 1.8E-14 101.7 3.9 166 102-313 6-179 (186)
192 3p26_A Elongation factor 1 alp 98.9 3.3E-09 1.1E-13 113.2 10.6 67 182-255 109-185 (483)
193 1wb1_A Translation elongation 98.9 2.4E-09 8.3E-14 114.3 9.4 163 101-312 19-187 (482)
194 3cbq_A GTP-binding protein REM 98.9 2.3E-09 7.7E-14 99.9 8.0 156 101-312 23-186 (195)
195 3o47_A ADP-ribosylation factor 98.9 3E-09 1E-13 108.0 9.5 155 101-313 165-326 (329)
196 2iwr_A Centaurin gamma 1; ANK 98.9 1.5E-09 5E-14 98.4 6.4 151 101-312 7-167 (178)
197 3c5c_A RAS-like protein 12; GD 98.9 1.2E-09 4.2E-14 100.7 5.9 154 100-312 20-184 (187)
198 2gco_A H9, RHO-related GTP-bin 98.9 1.6E-09 5.4E-14 101.0 6.6 165 101-311 25-197 (201)
199 2c78_A Elongation factor TU-A; 98.9 2.8E-09 9.5E-14 111.1 9.1 128 101-255 11-142 (405)
200 3t34_A Dynamin-related protein 98.9 9.7E-09 3.3E-13 105.2 12.9 82 183-264 135-226 (360)
201 3izy_P Translation initiation 98.9 4.2E-10 1.4E-14 121.5 2.7 159 101-312 4-166 (537)
202 1f60_A Elongation factor EEF1A 98.9 4.8E-09 1.6E-13 111.3 10.0 66 182-254 83-158 (458)
203 3ez2_A Plasmid partition prote 98.9 8.7E-09 3E-13 106.9 11.7 44 98-141 105-155 (398)
204 3def_A T7I23.11 protein; chlor 98.9 5.4E-09 1.8E-13 102.4 9.4 119 101-255 36-165 (262)
205 3io3_A DEHA2D07832P; chaperone 98.9 9.8E-09 3.4E-13 105.2 11.7 39 101-139 18-58 (348)
206 3mca_A HBS1, elongation factor 98.9 1.7E-10 5.9E-15 126.1 -1.4 117 182-315 253-398 (592)
207 3l0i_B RAS-related protein RAB 98.9 9E-11 3.1E-15 109.2 -3.2 153 101-313 33-195 (199)
208 3ihw_A Centg3; RAS, centaurin, 98.9 3.2E-09 1.1E-13 97.8 7.3 152 100-312 19-178 (184)
209 2ywe_A GTP-binding protein LEP 98.8 1.2E-08 4.3E-13 111.3 12.9 108 183-314 72-184 (600)
210 2elf_A Protein translation elo 98.8 6.3E-09 2.2E-13 107.4 9.7 155 93-313 13-179 (370)
211 1s0u_A EIF-2-gamma, translatio 98.8 2.4E-08 8.2E-13 104.2 13.8 111 184-314 81-198 (408)
212 3ez9_A Para; DNA binding, wing 98.8 7.7E-09 2.6E-13 107.6 9.7 43 99-141 109-158 (403)
213 1dar_A EF-G, elongation factor 98.8 3.1E-08 1.1E-12 110.2 15.1 65 183-255 76-143 (691)
214 1kk1_A EIF2gamma; initiation o 98.8 1.5E-08 5.1E-13 105.7 11.8 111 184-314 83-200 (410)
215 2j0v_A RAC-like GTP-binding pr 98.8 3.2E-09 1.1E-13 99.4 6.1 163 101-313 9-179 (212)
216 3th5_A RAS-related C3 botulinu 98.3 4.5E-10 1.5E-14 104.7 0.0 167 101-311 30-202 (204)
217 2atx_A Small GTP binding prote 98.8 6.5E-09 2.2E-13 95.8 7.7 166 101-311 18-190 (194)
218 3cb4_D GTP-binding protein LEP 98.8 1.2E-08 3.9E-13 111.7 10.9 108 183-314 70-182 (599)
219 1d2e_A Elongation factor TU (E 98.8 8E-09 2.7E-13 107.5 8.8 126 102-255 4-133 (397)
220 1zun_B Sulfate adenylate trans 98.8 1.6E-08 5.6E-13 106.3 10.1 66 183-255 103-171 (434)
221 1g7s_A Translation initiation 98.8 1.8E-08 6.2E-13 110.1 10.8 118 184-312 70-216 (594)
222 3vqt_A RF-3, peptide chain rel 98.7 2.7E-08 9.3E-13 107.8 11.3 122 101-254 31-165 (548)
223 1zo1_I IF2, translation initia 98.7 9.9E-09 3.4E-13 109.9 7.6 158 100-311 3-164 (501)
224 2g3y_A GTP-binding protein GEM 98.7 1.5E-08 5.3E-13 96.3 8.1 158 101-312 37-201 (211)
225 1jny_A EF-1-alpha, elongation 98.7 3.2E-08 1.1E-12 104.1 10.9 67 182-255 82-158 (435)
226 2rdo_7 EF-G, elongation factor 98.7 6.7E-08 2.3E-12 107.7 13.6 65 183-255 81-148 (704)
227 3llu_A RAS-related GTP-binding 98.7 1.7E-08 5.8E-13 93.6 7.3 114 183-311 68-194 (196)
228 1jal_A YCHF protein; nucleotid 98.7 6.3E-08 2.1E-12 99.6 12.1 102 103-226 4-108 (363)
229 3igf_A ALL4481 protein; two-do 98.7 1.2E-07 4.3E-12 97.8 14.4 36 102-137 3-38 (374)
230 1nrj_B SR-beta, signal recogni 98.7 4.8E-08 1.6E-12 91.7 9.6 114 100-256 11-135 (218)
231 2cjw_A GTP-binding protein GEM 98.7 1.9E-08 6.6E-13 93.3 6.2 157 102-312 7-170 (192)
232 2dy1_A Elongation factor G; tr 98.7 9.9E-08 3.4E-12 105.7 12.8 125 101-254 9-139 (665)
233 1tq4_A IIGP1, interferon-induc 98.7 3.8E-07 1.3E-11 95.4 16.5 261 101-423 69-348 (413)
234 1m7b_A RND3/RHOE small GTP-bin 98.7 1E-08 3.5E-13 93.8 4.0 167 101-311 7-180 (184)
235 3r7w_A Gtpase1, GTP-binding pr 98.7 2.2E-08 7.5E-13 100.5 6.7 118 102-255 4-129 (307)
236 1udx_A The GTP-binding protein 98.6 2.5E-08 8.5E-13 104.5 7.0 157 103-313 159-324 (416)
237 3avx_A Elongation factor TS, e 98.6 9.4E-08 3.2E-12 110.2 12.1 169 101-313 296-485 (1289)
238 3q3j_B RHO-related GTP-binding 98.6 8.5E-09 2.9E-13 97.4 2.8 169 101-312 27-201 (214)
239 2zej_A Dardarin, leucine-rich 98.6 2.1E-08 7.3E-13 92.0 5.0 163 103-313 4-177 (184)
240 2wkq_A NPH1-1, RAS-related C3 98.6 1.7E-08 5.9E-13 100.7 4.5 168 101-312 155-328 (332)
241 1gwn_A RHO-related GTP-binding 98.6 5.8E-09 2E-13 98.1 0.9 167 101-311 28-201 (205)
242 4dkx_A RAS-related protein RAB 98.6 1.5E-07 5.2E-12 89.8 9.5 152 102-313 14-175 (216)
243 3j25_A Tetracycline resistance 98.6 1.5E-07 5.2E-12 103.7 10.3 183 102-313 3-238 (638)
244 2f9l_A RAB11B, member RAS onco 98.5 8.9E-08 3E-12 88.9 6.3 151 102-312 6-166 (199)
245 1r5b_A Eukaryotic peptide chai 98.5 1.2E-07 4.2E-12 100.7 7.5 66 183-255 120-195 (467)
246 2dby_A GTP-binding protein; GD 98.4 1E-07 3.4E-12 98.3 4.2 22 103-124 3-24 (368)
247 3of5_A Dethiobiotin synthetase 98.4 1.7E-06 5.8E-11 83.2 12.5 166 101-272 4-202 (228)
248 1oix_A RAS-related protein RAB 98.4 1.8E-07 6.3E-12 86.5 5.1 150 102-311 30-189 (191)
249 1ihu_A Arsenical pump-driving 98.4 5E-07 1.7E-11 98.5 9.2 39 102-140 328-366 (589)
250 2r8r_A Sensor protein; KDPD, P 98.4 7.8E-07 2.7E-11 85.5 9.2 43 102-144 7-49 (228)
251 2qag_A Septin-2, protein NEDD5 98.4 1.3E-06 4.3E-11 89.8 10.7 21 102-122 38-58 (361)
252 4fn5_A EF-G 1, elongation fact 98.4 3.7E-06 1.3E-10 93.7 15.0 128 101-254 13-150 (709)
253 3ec1_A YQEH GTPase; atnos1, at 98.3 5.6E-08 1.9E-12 100.3 -0.1 121 102-256 163-289 (369)
254 3h2y_A GTPase family protein; 98.3 1.7E-07 5.9E-12 96.6 3.3 122 102-256 161-288 (368)
255 2i3b_A HCR-ntpase, human cance 98.3 1.3E-07 4.6E-12 88.4 1.0 27 103-129 3-29 (189)
256 3fgn_A Dethiobiotin synthetase 98.3 6.5E-06 2.2E-10 80.4 12.6 145 101-253 26-198 (251)
257 2ohf_A Protein OLA1, GTP-bindi 98.3 8.7E-07 3E-11 92.0 6.4 104 102-226 23-128 (396)
258 3qxc_A Dethiobiotin synthetase 98.2 1.8E-05 6.1E-10 76.9 15.3 148 101-255 21-203 (242)
259 2qag_B Septin-6, protein NEDD5 98.2 1.1E-06 3.6E-11 92.2 5.9 142 104-276 45-217 (427)
260 2w0m_A SSO2452; RECA, SSPF, un 98.2 1.3E-05 4.6E-10 75.1 13.0 39 102-140 24-62 (235)
261 1gvn_B Zeta; postsegregational 98.2 1.4E-05 4.6E-10 79.4 13.4 66 68-142 6-71 (287)
262 2dr3_A UPF0273 protein PH0284; 98.2 1.9E-05 6.6E-10 74.9 13.5 38 102-139 24-61 (247)
263 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 5E-06 1.7E-10 81.1 9.4 41 101-141 4-44 (260)
264 3ec2_A DNA replication protein 98.1 4.8E-06 1.6E-10 76.0 8.3 36 102-137 39-75 (180)
265 1n0u_A EF-2, elongation factor 98.1 3.2E-06 1.1E-10 96.1 7.7 64 183-254 97-163 (842)
266 2cvh_A DNA repair and recombin 98.1 1.8E-05 6.1E-10 73.9 11.6 35 102-139 21-55 (220)
267 1puj_A YLQF, conserved hypothe 98.1 3.3E-06 1.1E-10 83.8 6.6 60 100-197 119-178 (282)
268 2qnr_A Septin-2, protein NEDD5 98.1 1.5E-05 5E-10 79.7 11.2 23 100-122 17-39 (301)
269 3c5h_A Glucocorticoid receptor 98.0 1E-05 3.4E-10 78.7 8.7 83 214-312 162-253 (255)
270 1xp8_A RECA protein, recombina 98.0 5.4E-05 1.8E-09 77.9 14.1 88 101-195 74-164 (366)
271 2orw_A Thymidine kinase; TMTK, 98.0 6E-06 2.1E-10 76.6 6.4 160 102-283 4-172 (184)
272 3hr8_A Protein RECA; alpha and 98.0 8.5E-05 2.9E-09 76.1 15.0 39 101-139 61-99 (356)
273 1nij_A Hypothetical protein YJ 98.0 6E-05 2.1E-09 75.8 13.6 172 102-278 5-189 (318)
274 1u94_A RECA protein, recombina 98.0 4.5E-05 1.5E-09 78.1 12.9 88 101-196 63-154 (356)
275 3sop_A Neuronal-specific septi 98.0 3.8E-05 1.3E-09 75.6 11.7 128 103-256 4-155 (270)
276 3szr_A Interferon-induced GTP- 98.0 9.2E-06 3.1E-10 89.0 7.7 75 183-257 146-230 (608)
277 2r6a_A DNAB helicase, replicat 98.0 0.0014 4.9E-08 68.9 24.1 39 101-139 203-242 (454)
278 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 2.5E-06 8.4E-11 88.6 1.8 22 101-122 20-41 (392)
279 2zr9_A Protein RECA, recombina 97.9 7.3E-05 2.5E-09 76.3 12.7 88 101-196 61-152 (349)
280 2qag_C Septin-7; cell cycle, c 97.9 7.7E-05 2.6E-09 78.0 12.1 25 98-122 28-52 (418)
281 1cr0_A DNA primase/helicase; R 97.8 0.00019 6.4E-09 70.8 13.7 38 102-139 36-74 (296)
282 4a1f_A DNAB helicase, replicat 97.8 0.00027 9.1E-09 71.9 14.9 142 102-251 47-205 (338)
283 1xjc_A MOBB protein homolog; s 97.8 2.1E-05 7.3E-10 72.2 6.0 40 101-140 4-43 (169)
284 2q6t_A DNAB replication FORK h 97.8 0.0021 7.3E-08 67.3 21.7 114 101-225 200-319 (444)
285 1f5n_A Interferon-induced guan 97.8 2.5E-05 8.5E-10 85.1 6.8 28 100-133 37-64 (592)
286 2ehv_A Hypothetical protein PH 97.8 6.5E-05 2.2E-09 71.4 9.0 39 101-139 30-69 (251)
287 2b8t_A Thymidine kinase; deoxy 97.8 5.3E-05 1.8E-09 72.6 8.2 96 101-209 12-113 (223)
288 3bh0_A DNAB-like replicative h 97.7 0.00026 8.8E-09 71.0 13.3 116 102-225 69-190 (315)
289 3bgw_A DNAB-like replicative h 97.7 0.0018 6.2E-08 68.1 20.3 117 101-225 197-319 (444)
290 2p5t_B PEZT; postsegregational 97.7 0.00019 6.6E-09 69.4 11.8 42 99-143 30-71 (253)
291 2z43_A DNA repair and recombin 97.7 6.3E-05 2.2E-09 75.7 8.6 42 101-142 107-155 (324)
292 1v5w_A DMC1, meiotic recombina 97.7 0.00019 6.4E-09 72.9 12.2 42 101-142 122-170 (343)
293 1n0w_A DNA repair protein RAD5 97.7 9.7E-05 3.3E-09 69.9 9.4 38 102-139 25-68 (243)
294 2axn_A 6-phosphofructo-2-kinas 97.7 0.00015 5.2E-09 77.9 11.9 43 100-142 34-76 (520)
295 3lda_A DNA repair protein RAD5 97.7 0.00046 1.6E-08 71.7 15.2 41 102-142 179-226 (400)
296 2kjq_A DNAA-related protein; s 97.7 8.5E-05 2.9E-09 66.4 8.3 36 102-137 37-72 (149)
297 4a74_A DNA repair and recombin 97.7 0.00016 5.3E-09 67.8 10.3 38 101-138 25-68 (231)
298 3lv8_A DTMP kinase, thymidylat 97.7 0.00021 7.3E-09 68.9 11.0 40 100-139 26-65 (236)
299 1xx6_A Thymidine kinase; NESG, 97.7 0.00015 5.3E-09 67.7 9.4 96 101-209 8-105 (191)
300 3c8u_A Fructokinase; YP_612366 97.7 0.0001 3.5E-09 69.0 8.3 42 100-141 21-62 (208)
301 3cnl_A YLQF, putative uncharac 97.6 3.2E-05 1.1E-09 75.8 4.6 30 102-137 100-129 (262)
302 1ly1_A Polynucleotide kinase; 97.6 0.00016 5.5E-09 65.1 7.8 38 101-142 2-39 (181)
303 1rz3_A Hypothetical protein rb 97.6 0.00019 6.4E-09 66.9 8.5 42 100-141 21-62 (201)
304 1knq_A Gluconate kinase; ALFA/ 97.6 0.00022 7.6E-09 64.3 8.7 37 101-142 8-44 (175)
305 2yvu_A Probable adenylyl-sulfa 97.5 6.5E-05 2.2E-09 68.8 5.1 43 100-142 12-54 (186)
306 3io5_A Recombination and repai 97.5 0.00054 1.8E-08 69.0 11.9 86 102-194 29-122 (333)
307 1nlf_A Regulatory protein REPA 97.5 0.00066 2.3E-08 66.4 12.3 39 101-139 30-78 (279)
308 3e1s_A Exodeoxyribonuclease V, 97.5 0.00029 9.8E-09 76.6 10.4 103 101-225 204-316 (574)
309 3bos_A Putative DNA replicatio 97.5 0.00019 6.5E-09 67.3 8.0 39 101-139 52-90 (242)
310 2i1q_A DNA repair and recombin 97.5 0.00019 6.6E-09 71.8 8.1 42 101-142 98-156 (322)
311 1l8q_A Chromosomal replication 97.5 0.00015 5.1E-09 72.4 7.2 38 102-139 38-75 (324)
312 3jvv_A Twitching mobility prot 97.5 0.00066 2.3E-08 69.4 11.9 83 101-193 123-206 (356)
313 4eun_A Thermoresistant glucoki 97.5 0.00016 5.5E-09 67.1 6.7 37 101-142 29-65 (200)
314 1np6_A Molybdopterin-guanine d 97.4 0.00013 4.4E-09 67.1 5.7 38 102-139 7-44 (174)
315 2z0h_A DTMP kinase, thymidylat 97.4 0.0025 8.4E-08 58.1 14.1 34 103-136 2-35 (197)
316 3q5d_A Atlastin-1; G protein, 97.4 0.00014 4.7E-09 76.7 6.1 28 99-126 65-92 (447)
317 4edh_A DTMP kinase, thymidylat 97.4 0.0012 4E-08 62.6 12.0 36 101-136 6-41 (213)
318 4eaq_A DTMP kinase, thymidylat 97.4 0.0025 8.6E-08 60.8 14.3 35 100-135 25-59 (229)
319 3t61_A Gluconokinase; PSI-biol 97.4 0.00072 2.4E-08 62.6 10.1 37 101-142 18-54 (202)
320 3v9p_A DTMP kinase, thymidylat 97.3 0.00084 2.9E-08 64.3 10.2 36 101-136 25-64 (227)
321 1nks_A Adenylate kinase; therm 97.3 0.00016 5.5E-09 65.7 5.0 37 102-138 2-38 (194)
322 4tmk_A Protein (thymidylate ki 97.3 0.0012 4.2E-08 62.5 11.1 37 102-139 4-41 (213)
323 3zvl_A Bifunctional polynucleo 97.3 0.0011 3.7E-08 69.1 11.3 38 99-141 256-293 (416)
324 3tqc_A Pantothenate kinase; bi 97.3 0.00044 1.5E-08 69.7 7.9 43 99-141 90-134 (321)
325 2zts_A Putative uncharacterize 97.3 0.0021 7E-08 60.8 12.1 39 101-139 30-69 (251)
326 1q57_A DNA primase/helicase; d 97.3 0.0019 6.4E-08 68.8 13.0 39 101-139 242-281 (503)
327 1odf_A YGR205W, hypothetical 3 97.3 0.00052 1.8E-08 68.2 8.0 42 99-140 29-73 (290)
328 1kht_A Adenylate kinase; phosp 97.3 0.00021 7.3E-09 64.9 4.8 37 102-138 4-40 (192)
329 3r7w_B Gtpase2, GTP-binding pr 97.2 0.00086 3E-08 67.8 9.5 69 183-256 45-121 (331)
330 1tf7_A KAIC; homohexamer, hexa 97.2 0.0017 5.8E-08 69.6 12.3 37 102-138 282-318 (525)
331 2eyu_A Twitching motility prot 97.2 0.00062 2.1E-08 66.5 8.0 81 101-193 25-108 (261)
332 1pzn_A RAD51, DNA repair and r 97.2 0.0011 3.8E-08 67.4 10.2 41 101-141 131-178 (349)
333 3ld9_A DTMP kinase, thymidylat 97.2 0.00098 3.4E-08 63.7 9.1 41 100-140 20-61 (223)
334 1fnn_A CDC6P, cell division co 97.2 0.0044 1.5E-07 62.5 14.4 61 73-140 23-84 (389)
335 4b3f_X DNA-binding protein smu 97.2 0.00068 2.3E-08 74.6 8.9 43 103-148 207-249 (646)
336 2qt1_A Nicotinamide riboside k 97.2 0.00037 1.3E-08 64.8 5.9 42 93-140 13-56 (207)
337 3uie_A Adenylyl-sulfate kinase 97.2 0.0003 1E-08 65.3 5.0 42 101-142 25-66 (200)
338 3t15_A Ribulose bisphosphate c 97.2 0.0013 4.3E-08 65.2 9.7 35 100-137 35-69 (293)
339 2ewv_A Twitching motility prot 97.2 0.0014 4.8E-08 67.3 10.3 83 100-193 135-219 (372)
340 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0048 1.6E-07 58.9 13.5 34 101-137 39-72 (262)
341 3asz_A Uridine kinase; cytidin 97.1 0.00043 1.5E-08 64.4 5.6 38 100-140 5-42 (211)
342 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.0036 1.2E-07 63.1 12.7 33 102-137 124-156 (331)
343 2chg_A Replication factor C sm 97.1 0.0018 6E-08 59.3 9.7 32 104-135 41-72 (226)
344 1a7j_A Phosphoribulokinase; tr 97.1 0.00023 7.7E-09 70.7 3.7 41 101-141 5-45 (290)
345 1m7g_A Adenylylsulfate kinase; 97.1 0.00034 1.1E-08 65.5 4.5 41 101-141 25-66 (211)
346 2qgz_A Helicase loader, putati 97.1 0.0013 4.5E-08 65.7 8.8 36 102-137 153-189 (308)
347 3syl_A Protein CBBX; photosynt 97.1 0.0044 1.5E-07 60.8 12.5 30 101-130 67-96 (309)
348 2obn_A Hypothetical protein; s 97.1 0.0062 2.1E-07 61.9 13.7 137 101-254 152-312 (349)
349 1uj2_A Uridine-cytidine kinase 97.1 0.00043 1.5E-08 66.7 4.9 42 99-140 20-66 (252)
350 2pez_A Bifunctional 3'-phospho 97.0 0.00049 1.7E-08 62.4 4.9 41 101-141 5-45 (179)
351 2qby_B CDC6 homolog 3, cell di 97.0 0.0031 1E-07 63.7 11.3 56 73-137 26-89 (384)
352 4a0g_A Adenosylmethionine-8-am 97.0 0.0057 1.9E-07 69.3 14.6 36 101-136 34-75 (831)
353 2z4s_A Chromosomal replication 97.0 0.001 3.5E-08 69.8 7.6 38 102-139 131-170 (440)
354 4hlc_A DTMP kinase, thymidylat 97.0 0.0033 1.1E-07 59.1 10.2 34 102-136 3-36 (205)
355 3cmu_A Protein RECA, recombina 97.0 0.0032 1.1E-07 76.8 12.3 91 100-196 1426-1519(2050)
356 2f1r_A Molybdopterin-guanine d 97.0 0.00047 1.6E-08 63.1 4.1 38 102-139 3-40 (171)
357 1gtv_A TMK, thymidylate kinase 97.0 0.00021 7.3E-09 66.4 1.8 36 103-138 2-37 (214)
358 1sq5_A Pantothenate kinase; P- 97.0 0.00075 2.6E-08 67.3 5.9 42 100-141 79-122 (308)
359 1ltq_A Polynucleotide kinase; 97.0 0.0014 4.7E-08 64.4 7.7 38 101-142 2-39 (301)
360 2v1u_A Cell division control p 97.0 0.0069 2.4E-07 60.8 13.0 38 101-138 44-87 (387)
361 1nn5_A Similar to deoxythymidy 96.9 0.00091 3.1E-08 62.0 5.8 35 101-135 9-43 (215)
362 2rhm_A Putative kinase; P-loop 96.9 0.0004 1.4E-08 63.3 3.3 36 101-141 5-40 (193)
363 3aez_A Pantothenate kinase; tr 96.9 0.001 3.4E-08 66.8 6.1 41 100-140 89-131 (312)
364 2qby_A CDC6 homolog 1, cell di 96.9 0.0029 1E-07 63.4 9.5 37 101-137 45-84 (386)
365 3te6_A Regulatory protein SIR3 96.9 0.028 9.6E-07 56.4 16.5 43 76-127 29-71 (318)
366 3cmw_A Protein RECA, recombina 96.9 0.0044 1.5E-07 74.7 12.0 88 101-195 732-822 (1706)
367 2j9r_A Thymidine kinase; TK1, 96.8 0.0027 9.3E-08 60.2 8.3 109 101-224 28-138 (214)
368 2w58_A DNAI, primosome compone 96.8 0.001 3.4E-08 61.4 5.3 36 102-137 55-90 (202)
369 3llm_A ATP-dependent RNA helic 96.8 0.0097 3.3E-07 56.4 12.2 125 102-230 77-222 (235)
370 3cmw_A Protein RECA, recombina 96.8 0.0047 1.6E-07 74.4 11.9 88 101-195 383-473 (1706)
371 2wwf_A Thymidilate kinase, put 96.8 0.0013 4.3E-08 60.9 5.6 36 101-136 10-45 (212)
372 2plr_A DTMP kinase, probable t 96.8 0.0012 4.2E-08 60.8 5.3 32 101-133 4-35 (213)
373 2p65_A Hypothetical protein PF 96.8 0.00099 3.4E-08 59.6 4.5 26 102-127 44-69 (187)
374 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0059 2E-07 61.2 10.6 71 101-193 45-115 (322)
375 3hjn_A DTMP kinase, thymidylat 96.8 0.0081 2.8E-07 55.9 10.8 35 103-137 2-36 (197)
376 2pbr_A DTMP kinase, thymidylat 96.8 0.0015 5E-08 59.4 5.6 32 103-134 2-33 (195)
377 3kb2_A SPBC2 prophage-derived 96.7 0.00079 2.7E-08 59.9 3.6 35 103-142 3-37 (173)
378 1g5t_A COB(I)alamin adenosyltr 96.7 0.013 4.5E-07 54.7 12.0 38 102-139 29-66 (196)
379 3cmu_A Protein RECA, recombina 96.7 0.006 2E-07 74.5 12.1 86 101-193 383-471 (2050)
380 1qhx_A CPT, protein (chloramph 96.7 0.00067 2.3E-08 61.1 3.1 37 102-141 4-40 (178)
381 4gp7_A Metallophosphoesterase; 96.7 0.011 3.8E-07 53.3 11.3 22 101-122 9-30 (171)
382 4b4t_J 26S protease regulatory 96.7 0.017 5.7E-07 59.9 13.9 68 101-191 182-249 (405)
383 3upu_A ATP-dependent DNA helic 96.7 0.01 3.5E-07 62.3 12.6 35 103-137 47-82 (459)
384 3h4m_A Proteasome-activating n 96.7 0.0035 1.2E-07 60.9 8.3 34 101-137 51-84 (285)
385 1w36_D RECD, exodeoxyribonucle 96.7 0.004 1.4E-07 68.1 9.6 36 102-137 165-204 (608)
386 3d3q_A TRNA delta(2)-isopenten 96.7 0.0014 4.6E-08 66.6 5.2 34 102-140 8-41 (340)
387 3exa_A TRNA delta(2)-isopenten 96.7 0.0028 9.4E-08 63.7 7.2 34 101-139 3-36 (322)
388 2jeo_A Uridine-cytidine kinase 96.6 0.0018 6E-08 62.1 5.5 40 100-139 24-68 (245)
389 2v54_A DTMP kinase, thymidylat 96.6 0.0019 6.3E-08 59.4 5.4 35 101-137 4-38 (204)
390 3umf_A Adenylate kinase; rossm 96.6 0.0015 5.3E-08 62.1 4.7 39 99-142 27-66 (217)
391 3a8t_A Adenylate isopentenyltr 96.6 0.0039 1.3E-07 63.2 7.9 35 101-140 40-74 (339)
392 3b9p_A CG5977-PA, isoform A; A 96.6 0.0056 1.9E-07 59.8 8.9 25 101-125 54-78 (297)
393 1jbk_A CLPB protein; beta barr 96.6 0.0038 1.3E-07 55.6 7.1 37 101-137 43-86 (195)
394 1sxj_E Activator 1 40 kDa subu 96.6 0.011 3.6E-07 59.2 11.1 23 104-126 39-61 (354)
395 3u61_B DNA polymerase accessor 96.6 0.017 5.7E-07 57.2 12.2 38 101-141 48-85 (324)
396 4b4t_M 26S protease regulatory 96.6 0.0032 1.1E-07 66.0 7.1 68 101-191 215-282 (434)
397 1y63_A LMAJ004144AAA protein; 96.5 0.0012 4.2E-08 60.3 3.4 35 100-138 9-43 (184)
398 3a00_A Guanylate kinase, GMP k 96.5 0.0011 3.8E-08 60.7 3.1 25 102-126 2-26 (186)
399 1kgd_A CASK, peripheral plasma 96.5 0.0012 4.2E-08 60.1 3.3 24 102-125 6-29 (180)
400 1sxj_C Activator 1 40 kDa subu 96.5 0.0054 1.9E-07 61.5 8.4 28 104-131 49-76 (340)
401 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.9E-08 60.6 3.7 32 102-139 3-34 (206)
402 4b4t_K 26S protease regulatory 96.5 0.0036 1.2E-07 65.5 7.1 68 101-191 206-273 (428)
403 1lv7_A FTSH; alpha/beta domain 96.5 0.009 3.1E-07 57.2 9.5 34 101-137 45-78 (257)
404 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.9E-08 58.9 4.1 33 101-138 3-35 (196)
405 1bif_A 6-phosphofructo-2-kinas 96.5 0.014 4.9E-07 61.4 11.7 43 100-142 38-80 (469)
406 3d8b_A Fidgetin-like protein 1 96.5 0.0099 3.4E-07 60.3 10.1 35 100-137 116-150 (357)
407 4b4t_L 26S protease subunit RP 96.5 0.0039 1.3E-07 65.4 7.0 34 101-137 215-248 (437)
408 1zp6_A Hypothetical protein AT 96.4 0.0018 6E-08 59.0 3.8 23 101-123 9-31 (191)
409 3vkw_A Replicase large subunit 96.4 0.017 5.8E-07 60.6 11.7 109 100-226 160-271 (446)
410 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0087 3E-07 56.9 8.5 111 100-225 27-139 (219)
411 3eie_A Vacuolar protein sortin 96.4 0.0084 2.9E-07 59.8 9.0 34 101-137 51-84 (322)
412 1lvg_A Guanylate kinase, GMP k 96.4 0.0016 5.3E-08 60.6 3.4 25 102-126 5-29 (198)
413 1uf9_A TT1252 protein; P-loop, 96.4 0.0016 5.3E-08 59.8 3.3 36 99-140 6-41 (203)
414 2c95_A Adenylate kinase 1; tra 96.4 0.0021 7.1E-08 58.6 4.1 33 101-138 9-41 (196)
415 2bbw_A Adenylate kinase 4, AK4 96.4 0.0021 7.2E-08 61.5 4.1 25 101-125 27-51 (246)
416 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0035 1.2E-07 63.3 5.9 80 102-194 172-251 (330)
417 1ukz_A Uridylate kinase; trans 96.4 0.0024 8.3E-08 58.8 4.3 36 98-138 12-47 (203)
418 3tr0_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 59.4 3.5 24 102-125 8-31 (205)
419 3tau_A Guanylate kinase, GMP k 96.4 0.0016 5.4E-08 60.9 3.0 25 101-125 8-32 (208)
420 1njg_A DNA polymerase III subu 96.4 0.02 6.7E-07 52.7 10.6 28 101-128 45-72 (250)
421 2orv_A Thymidine kinase; TP4A 96.4 0.019 6.5E-07 55.1 10.6 83 101-196 19-103 (234)
422 2if2_A Dephospho-COA kinase; a 96.3 0.0018 6.1E-08 59.8 3.2 31 103-139 3-33 (204)
423 3vaa_A Shikimate kinase, SK; s 96.3 0.0024 8.2E-08 59.0 4.1 34 101-139 25-58 (199)
424 1kag_A SKI, shikimate kinase I 96.3 0.0017 5.9E-08 58.1 3.0 33 102-139 5-37 (173)
425 2qor_A Guanylate kinase; phosp 96.3 0.0016 5.6E-08 60.4 2.9 25 101-125 12-36 (204)
426 2qp9_X Vacuolar protein sortin 96.3 0.013 4.6E-07 59.4 9.9 33 102-137 85-117 (355)
427 3cm0_A Adenylate kinase; ATP-b 96.3 0.0023 7.9E-08 57.9 3.7 33 101-138 4-36 (186)
428 4fcw_A Chaperone protein CLPB; 96.3 0.0028 9.6E-08 62.2 4.6 41 101-141 47-87 (311)
429 1ye8_A Protein THEP1, hypothet 96.3 0.0024 8.1E-08 58.6 3.8 24 103-126 2-25 (178)
430 2cdn_A Adenylate kinase; phosp 96.3 0.0028 9.7E-08 58.4 4.3 34 100-138 19-52 (201)
431 2ze6_A Isopentenyl transferase 96.3 0.0031 1E-07 61.0 4.7 34 102-140 2-35 (253)
432 3crm_A TRNA delta(2)-isopenten 96.3 0.0048 1.6E-07 62.2 6.2 35 101-140 5-39 (323)
433 3trf_A Shikimate kinase, SK; a 96.3 0.0026 9E-08 57.6 4.0 35 101-140 5-39 (185)
434 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 8.7E-08 58.1 3.9 34 101-139 12-45 (199)
435 1x6v_B Bifunctional 3'-phospho 96.2 0.0032 1.1E-07 69.0 5.1 43 100-142 51-93 (630)
436 1qf9_A UMP/CMP kinase, protein 96.2 0.0037 1.3E-07 56.5 4.8 33 101-138 6-38 (194)
437 4b4t_I 26S protease regulatory 96.2 0.007 2.4E-07 63.2 7.4 67 101-190 216-282 (437)
438 3lw7_A Adenylate kinase relate 96.2 0.0031 1.1E-07 55.7 4.1 19 103-121 3-21 (179)
439 1vht_A Dephospho-COA kinase; s 96.2 0.0027 9.4E-08 59.3 3.9 33 101-139 4-36 (218)
440 2j41_A Guanylate kinase; GMP, 96.2 0.0021 7.2E-08 59.1 3.0 25 101-125 6-30 (207)
441 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 59.2 4.1 33 101-138 4-36 (220)
442 3eph_A TRNA isopentenyltransfe 96.2 0.0084 2.9E-07 62.2 7.7 34 101-139 2-35 (409)
443 3foz_A TRNA delta(2)-isopenten 96.2 0.0083 2.8E-07 60.1 7.4 34 101-139 10-43 (316)
444 2ce7_A Cell division protein F 96.2 0.022 7.5E-07 60.4 11.1 69 102-193 50-118 (476)
445 1zak_A Adenylate kinase; ATP:A 96.2 0.0028 9.5E-08 59.5 3.8 25 101-125 5-29 (222)
446 2gza_A Type IV secretion syste 96.2 0.0035 1.2E-07 64.0 4.7 33 102-134 176-208 (361)
447 2jaq_A Deoxyguanosine kinase; 96.1 0.0032 1.1E-07 57.6 3.8 24 103-126 2-25 (205)
448 3ney_A 55 kDa erythrocyte memb 96.1 0.003 1E-07 59.2 3.6 26 100-125 18-43 (197)
449 1d2n_A N-ethylmaleimide-sensit 96.1 0.0085 2.9E-07 57.9 6.8 33 101-136 64-96 (272)
450 1iqp_A RFCS; clamp loader, ext 96.1 0.013 4.6E-07 57.4 8.4 27 103-129 48-74 (327)
451 1cke_A CK, MSSA, protein (cyti 96.1 0.0035 1.2E-07 58.6 3.9 32 102-138 6-37 (227)
452 4ido_A Atlastin-1; GTPase, GTP 96.1 0.0071 2.4E-07 63.6 6.5 27 100-126 66-92 (457)
453 3iij_A Coilin-interacting nucl 96.1 0.0035 1.2E-07 56.6 3.7 33 101-138 11-43 (180)
454 2f6r_A COA synthase, bifunctio 96.1 0.0029 9.8E-08 62.3 3.2 37 98-140 72-108 (281)
455 1sxj_B Activator 1 37 kDa subu 96.0 0.012 4.1E-07 57.6 7.7 26 104-129 45-70 (323)
456 1m8p_A Sulfate adenylyltransfe 96.0 0.0041 1.4E-07 67.5 4.7 44 99-142 394-438 (573)
457 1z6g_A Guanylate kinase; struc 96.0 0.0028 9.6E-08 59.8 3.0 25 101-125 23-47 (218)
458 1znw_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 58.5 3.4 24 102-125 21-44 (207)
459 3pxi_A Negative regulator of g 96.0 0.014 4.7E-07 65.3 9.0 36 102-137 522-557 (758)
460 3sr0_A Adenylate kinase; phosp 96.0 0.0039 1.4E-07 58.6 3.8 36 103-143 2-38 (206)
461 1p9r_A General secretion pathw 96.0 0.0057 2E-07 63.8 5.4 38 101-138 167-204 (418)
462 2nq2_C Hypothetical ABC transp 96.0 0.076 2.6E-06 51.3 13.0 38 102-139 32-75 (253)
463 2vli_A Antibiotic resistance p 96.0 0.0024 8.1E-08 57.6 2.1 25 101-125 5-29 (183)
464 1zd8_A GTP:AMP phosphotransfer 96.0 0.0034 1.2E-07 59.2 3.2 33 101-138 7-39 (227)
465 1t9h_A YLOQ, probable GTPase E 96.0 0.0026 9.1E-08 63.6 2.5 55 103-196 175-236 (307)
466 1w5s_A Origin recognition comp 96.0 0.039 1.3E-06 55.9 11.4 37 101-137 50-94 (412)
467 2iyv_A Shikimate kinase, SK; t 95.9 0.0039 1.3E-07 56.5 3.4 33 103-140 4-36 (184)
468 3tlx_A Adenylate kinase 2; str 95.9 0.0052 1.8E-07 58.9 4.3 34 100-138 28-61 (243)
469 3cf2_A TER ATPase, transitiona 95.9 0.023 8E-07 63.9 10.2 69 100-191 237-305 (806)
470 2bdt_A BH3686; alpha-beta prot 95.9 0.0041 1.4E-07 56.6 3.5 22 102-123 3-24 (189)
471 3nh6_A ATP-binding cassette SU 95.9 0.071 2.4E-06 53.1 12.7 26 101-126 80-105 (306)
472 2gks_A Bifunctional SAT/APS ki 95.9 0.0049 1.7E-07 66.5 4.4 41 101-141 372-412 (546)
473 3fb4_A Adenylate kinase; psych 95.9 0.0049 1.7E-07 57.3 3.8 30 103-137 2-31 (216)
474 1w4r_A Thymidine kinase; type 95.9 0.045 1.5E-06 51.0 10.3 38 101-138 20-57 (195)
475 3cf0_A Transitional endoplasmi 95.8 0.0034 1.1E-07 62.2 2.7 25 101-125 49-73 (301)
476 1e6c_A Shikimate kinase; phosp 95.8 0.0046 1.6E-07 55.1 3.3 33 103-140 4-36 (173)
477 3be4_A Adenylate kinase; malar 95.8 0.0044 1.5E-07 58.1 3.3 33 101-138 5-37 (217)
478 1via_A Shikimate kinase; struc 95.8 0.0046 1.6E-07 55.6 3.4 33 103-140 6-38 (175)
479 4b4t_H 26S protease regulatory 95.8 0.017 5.8E-07 60.9 8.0 69 100-191 242-310 (467)
480 2gk6_A Regulator of nonsense t 95.8 0.013 4.3E-07 64.2 7.4 46 103-151 197-243 (624)
481 3vfd_A Spastin; ATPase, microt 95.8 0.032 1.1E-06 57.0 10.1 34 101-137 148-181 (389)
482 2zan_A Vacuolar protein sortin 95.8 0.0097 3.3E-07 62.4 6.1 35 101-137 167-201 (444)
483 2pt5_A Shikimate kinase, SK; a 95.8 0.0059 2E-07 54.2 3.8 33 103-140 2-34 (168)
484 1tf7_A KAIC; homohexamer, hexa 95.8 0.042 1.4E-06 58.7 11.1 36 102-137 40-76 (525)
485 2grj_A Dephospho-COA kinase; T 95.7 0.0042 1.4E-07 57.8 2.7 35 101-140 12-46 (192)
486 3lnc_A Guanylate kinase, GMP k 95.7 0.0032 1.1E-07 59.5 1.9 25 101-125 27-52 (231)
487 1ak2_A Adenylate kinase isoenz 95.7 0.0073 2.5E-07 57.2 4.2 33 101-138 16-48 (233)
488 3dl0_A Adenylate kinase; phosp 95.7 0.0053 1.8E-07 57.2 3.1 34 103-141 2-36 (216)
489 1zuh_A Shikimate kinase; alpha 95.6 0.0071 2.4E-07 53.9 3.8 34 101-139 7-40 (168)
490 1s96_A Guanylate kinase, GMP k 95.6 0.0059 2E-07 57.9 3.4 25 102-126 17-41 (219)
491 1sxj_D Activator 1 41 kDa subu 95.6 0.051 1.7E-06 53.9 10.5 23 104-126 61-83 (353)
492 1ixz_A ATP-dependent metallopr 95.6 0.015 5E-07 55.6 6.2 22 104-125 52-73 (254)
493 2xb4_A Adenylate kinase; ATP-b 95.6 0.0072 2.5E-07 57.0 3.8 23 103-125 2-24 (223)
494 1htw_A HI0065; nucleotide-bind 95.6 0.008 2.7E-07 54.1 3.8 25 101-125 33-57 (158)
495 2gno_A DNA polymerase III, gam 95.6 0.065 2.2E-06 53.3 10.8 24 101-124 18-41 (305)
496 1e4v_A Adenylate kinase; trans 95.5 0.0077 2.6E-07 56.1 3.8 23 103-125 2-24 (214)
497 2v9p_A Replication protein E1; 95.5 0.0086 2.9E-07 59.8 4.3 24 102-125 127-150 (305)
498 2wjy_A Regulator of nonsense t 95.5 0.018 6.2E-07 64.9 7.2 47 103-152 373-420 (800)
499 3ice_A Transcription terminati 95.5 0.048 1.6E-06 56.3 9.5 39 100-138 173-213 (422)
500 3pxg_A Negative regulator of g 95.4 0.016 5.6E-07 61.0 6.2 26 102-127 202-227 (468)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-95 Score=766.12 Aligned_cols=436 Identities=43% Similarity=0.746 Sum_probs=391.9
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 011010 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (495)
Q Consensus 1 m~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (495)
|||++|+++|+.++++++++++|||+++++.+++|+.+|+++||+++++.+|++++++.+..+++..++++.++++++|+
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
++|.++|++..... ..+++|.+|+++|+|||||||++++||.+|+++|++|++|++|+||++|++||+.++.+.++|++
T Consensus 81 ~eL~~~L~~~~~~~-~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPI-EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCC-CCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCccccc-ccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 99999999743333 33446889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 161 ~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
...+..+|+.++.+++..+..++||++||||||+++.+..++.++..+..+. .||.++||+||++++++.+++..|++.
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~-~pd~vlLVvDA~~gq~a~~~a~~f~~~ 238 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI-HPHEVILVIDGTIGQQAYNQALAFKEA 238 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGHHHHHHHHHHS
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh-cCceEEEEEeCCCchhHHHHHHHHHhh
Confidence 9888899999999999999888999999999999999999999999998888 899999999999999999999999999
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCC--ch
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ--QP 318 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~--~~ 318 (495)
++++++|+||+|+++++|.++++.+.++.||.|+|+||++++|++|+|.+++++++|+||+.+|+|++++.+++++ ++
T Consensus 239 ~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~ 318 (443)
T 3dm5_A 239 TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE 318 (443)
T ss_dssp CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998775 54
Q ss_pred HHhhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcc
Q 011010 319 ELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMN 398 (495)
Q Consensus 319 ~~~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~ 398 (495)
+.+++.+|+||++||++|+++|+||||+++||+||||++ ..+++...+.++++++||+|||+|||++||++| .+|+
T Consensus 319 -~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p--~~~~ 394 (443)
T 3dm5_A 319 -DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLG-YSLPDDVISIGEERLKKFKVIMDSMTEEELLNP--EIIN 394 (443)
T ss_dssp -HHHHHHTTCCCHHHHHHHHHHHHTTCC--------------------CCCCHHHHHHHHHHHTTSCHHHHHCG--GGCC
T ss_pred -HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCch-hhcchhhhhhhHHHHHHHHHHHHcCCHHHhcCc--hhcC
Confidence 889999999999999999999999999999999999998 333433345678999999999999999999987 8899
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchhhh
Q 011010 399 DSRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLKIPKKGEMSALS 448 (495)
Q Consensus 399 ~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (495)
+||++|||+||||+++|||+||+||++|++|||+|++ |++.+||
T Consensus 395 ~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~------~~~~~~~ 438 (443)
T 3dm5_A 395 YSRIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMNK------RQLSRLA 438 (443)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCS------CCCC---
T ss_pred hHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHH
Confidence 9999999999999999999999999999999999976 4555555
No 2
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=3.5e-93 Score=764.03 Aligned_cols=480 Identities=59% Similarity=0.969 Sum_probs=425.9
Q ss_pred ChhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHH
Q 011010 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (495)
Q Consensus 1 m~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (495)
|||++|+++|+.++++|++++++||+++++.+++|+.+|+++||+++++.+|++++++.+..+++.++++|.+.++++|+
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
++|.++++....++.+...++.+|+|+|+||||||||+++||.+|+++|++|++|++|+||+++++||+.++++.+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999999877677665567889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 161 ~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
...+..+|++++.+++..+...+||++||||||+++.+..++.++..+..++ .||.++||+|++.++++..++..|++.
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i-~pd~vllVvDa~~g~~~~~~a~~~~~~ 239 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI-QPDNIVYVMDASIGQACEAQAKAFKDK 239 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHH-CCSEEEEEEETTCCTTHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhh-cCceEEEEEeccccccHHHHHHHHHhh
Confidence 8878889999999999998778999999999999988778888887777777 899999999999998888888888877
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHH
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~ 320 (495)
+++.++|+||+|..++++.++++...+++||.|+++|++++++.+|+|.+++|+++|+||+..|++++.+. ++++.+++
T Consensus 240 ~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l 318 (504)
T 2j37_W 240 VDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEAL 318 (504)
T ss_dssp HCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTT
T ss_pred cCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHH
Confidence 77779999999999888889999999999999999999999999999999999999999999999999998 56677889
Q ss_pred hhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCc--cCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCC-CCCc
Q 011010 321 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE--LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLM 397 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~--~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i 397 (495)
.+|+..|+|+++||++|++++.|||++++|++||||++ . +. ......+++.++|++|||+|||++||++++ |++|
T Consensus 319 ~~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~-~~~~~-~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~ 396 (504)
T 2j37_W 319 IEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMS-KGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 396 (504)
T ss_dssp TTSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCS-CGGGC-SCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccc-hhhcc-ccccccChHhhhhhHHHHHhCCHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999998 4 42 222335788999999999999999999976 7899
Q ss_pred --chHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcch----hhhcchhHHHhhhcCChhHHHhcCC
Q 011010 398 --NDSRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGLK-IPKKGEMS----ALSRNMNAQHMSKVLPQGMLKQIGG 470 (495)
Q Consensus 398 --~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (495)
++||++|||+||||+++|||+||+||++|++|||+|++.+ +++.+.++ .+.+++++++|+++|||+++++|||
T Consensus 397 ~~~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (504)
T 2j37_W 397 SKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGG 476 (504)
T ss_dssp HHCTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTTHHHHTCCCCSSHHHHHHHHHCCCCCCSHHHHHHHHHHT
T ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcccccCCcCCchhhhhhhhhhhHHHHHHHhhcCHHHHHhcCC
Confidence 9999999999999999999999999999999999998743 22223232 2222344678899999999999999
Q ss_pred cccHHHHHHHcCCc
Q 011010 471 VGGLQNLMKQMGST 484 (495)
Q Consensus 471 ~~~~~~~~~~~~~~ 484 (495)
++||++||+||+++
T Consensus 477 ~~~~~~~~~~~~~~ 490 (504)
T 2j37_W 477 MAGLQSMMRQFQQG 490 (504)
T ss_dssp TSSSSHHHHHHC--
T ss_pred CchHHHHHHHHhcc
Confidence 99999999999963
No 3
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=2e-89 Score=722.00 Aligned_cols=423 Identities=39% Similarity=0.680 Sum_probs=381.7
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
++|+.++++|+++++|||+++++++++|+.+|+++||+++++.+|++++++.+..+++..+++|.++++++|+++|.++|
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC
Q 011010 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d 167 (495)
++...+....++++.+|+++|++||||||++++||.+|+++|++|+++++|+||+++++||..++.+.++|++......+
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC
Confidence 97644444445568899999999999999999999999999999999999999999999999999999999999888889
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEeCCCCCc--chHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceE
Q 011010 168 PVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGA 245 (495)
Q Consensus 168 p~~ia~~~l~~~~~~~~dvviIDTaG~~~--~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~ 245 (495)
|+.++..++..+...+||++||||||+++ .+..++.++..+..++ .||.++||+|+++++++.+++..|++.+++++
T Consensus 164 p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~g 242 (433)
T 3kl4_A 164 PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDASIGQKAYDLASRFHQASPIGS 242 (433)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCccchHHHHHHHHHhcccCCcE
Confidence 99999999999988899999999999988 8889999999999888 89999999999999999999999999889999
Q ss_pred EEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHhhccc
Q 011010 246 VIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLS 325 (495)
Q Consensus 246 vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~ 325 (495)
||+||+|+++++|.++++...++.||.|+|+||++++|++|+|..++++++|+||+.+|+|++++.+++++++++.+|+.
T Consensus 243 VIlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~ 322 (433)
T 3kl4_A 243 VIITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVM 322 (433)
T ss_dssp EEEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC--------------
T ss_pred EEEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cc--hhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCch---hhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchH
Q 011010 326 EG--NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPK---GREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 400 (495)
Q Consensus 326 ~~--~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~---~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 400 (495)
+| +||++||++|+++|+||||+++||+||||++ ..++. ...+.++++++||+|||+|||++||++| .+|++|
T Consensus 323 ~g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~-~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p--~~~~~s 399 (433)
T 3kl4_A 323 EGKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLG-IMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENP--NIIDKS 399 (433)
T ss_dssp -----CCHHHHHHHHHHHHHCCSSSGGGGTTTCCC-CCSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCG--GGCCHH
T ss_pred cCCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCc-cccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCc--hhccHH
Confidence 99 8999999999999999999999999999998 34442 2345678899999999999999999987 889999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMK 434 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 434 (495)
|++|||+||||+++|||+||+||++|++|||+|+
T Consensus 400 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 433 (433)
T 3kl4_A 400 RMRRIAEGSGLEVEEVRELLEWYNNMNRLLKMVK 433 (433)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999984
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=8.9e-83 Score=673.76 Aligned_cols=430 Identities=30% Similarity=0.503 Sum_probs=387.9
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|+.++++|+++++|||+++++.+++|+.+|+++||+++++.+|++++++.+.++++..+++|.++++++|++
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
+|.+++++...++.+..+++++|+|+|++||||||++++||.+|+++ |++|++|++|+||+++++||+.++...+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999997766666655678999999999999999999999999998 99999999999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 161 ~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
......+|..++.+++..+...+||+|||||||+++.+..++.++..+...+ .|+.+++|+|++.++++...++.|+..
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~-~p~~vllVvda~~g~~~~~~~~~f~~~ 239 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASI-NPVETLFVVDAMTGQDAANTAKAFNEA 239 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHS-CCSEEEEEEETTBCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhh-cCcceeEEeecchhHHHHHHHHHHhcc
Confidence 8777788999989999988767999999999999988888888888877777 899999999999999998888999888
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHH
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~ 320 (495)
+++.++|+||+|..++++.++++...++.||.|+|+|++++++.+|+|..++++++|+||+..|++++.+.+++++.+++
T Consensus 240 l~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l 319 (433)
T 2xxa_A 240 LPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKL 319 (433)
T ss_dssp SCCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999998877777889
Q ss_pred hhccccc-hhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcch
Q 011010 321 LQKLSEG-NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND 399 (495)
Q Consensus 321 ~~~~~~~-~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~ 399 (495)
.+|+.+| +|+++|+++||+++.+|||++++++||||++ ++..+..+..++++++|++|||+|||++||++| .+|++
T Consensus 320 ~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~-~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~--~~~~~ 396 (433)
T 2xxa_A 320 ASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKG 396 (433)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCG--GGCCH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcc-hhhhhhhccccHHHHHHHHHHHHcCCHHHhcCc--cccCH
Confidence 9999999 8999999999999999999999999999998 553223222567789999999999999999987 78899
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 400 SRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 400 sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
||++|||+||||+++|||+||+||++|++|||+|++
T Consensus 397 sr~~ria~gsg~~~~~v~~l~~~~~~~~~~~~~~~~ 432 (433)
T 2xxa_A 397 SRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKK 432 (433)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999975
No 5
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=6.8e-82 Score=663.75 Aligned_cols=418 Identities=32% Similarity=0.502 Sum_probs=382.8
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|+.++++|+++++|||+++++.+++|+.+|+++||+++++++|++++++.+.++++..+++|.+++++++++
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
+|...++....++.+. ++.+|+++|++||||||++.+||.+++..|++|.++++|+||+++.+||..++.+.+++++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998765555554 67899999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
.....+|..++.+++..++..+||+|||||||+++.+..++.++..+...+ .||.++||+|+++++++.+.++.|++.+
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~-~pd~vlLVvDa~tgq~av~~a~~f~~~l 237 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-GPDEVLLVLDAMTGQEALSVARAFDEKV 237 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGTTHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc-CCceEEEEEeccchHHHHHHHHHHHhcC
Confidence 777788999989999988777999999999999988888899998888888 9999999999999999999999999888
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHHh
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 321 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~~ 321 (495)
+++++|+||+|.++++|.++++.+.++.||.|+|+||+++++++|+|..++++++|+||+.+|++++++.+++++++++.
T Consensus 238 ~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~ 317 (425)
T 2ffh_A 238 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA 317 (425)
T ss_dssp CCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC----------
T ss_pred CceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999887766555543
Q ss_pred hccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011010 322 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 401 (495)
Q Consensus 322 ~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 401 (495)
. +|+++||++|++++.||||++++++||||++ .. . +.++++++|++|||+|||++||++| .+|++||
T Consensus 318 ----~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~-~~---~--~~~~~~~~~~~~i~~smt~~e~~~p--~~~~~sr 384 (425)
T 2ffh_A 318 ----K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGVP-QG---L--KVDEKAIKRLEAIVLSMTPEERKDP--RILNGSR 384 (425)
T ss_dssp ------CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCS-CC---T--TSCHHHHHHHHHHHHTSCHHHHHCG--GGCCHHH
T ss_pred ----H-hcCHHHHHHHHHHhhCcCChhhhhccCCCch-hh---c--cccHHHHHHHHHHHHcCCHHHhcCc--cccChHH
Confidence 2 8999999999999999999999999999997 22 1 2567889999999999999999986 8899999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 402 IMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 402 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
++|||+||||+++|||+||+||++|++|||+|++
T Consensus 385 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 418 (425)
T 2ffh_A 385 RKRIAKGSGTSVQEVNRFIKAFEEMKALMKSLEK 418 (425)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999976
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=2.3e-80 Score=655.13 Aligned_cols=425 Identities=44% Similarity=0.733 Sum_probs=371.9
Q ss_pred hhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHH
Q 011010 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (495)
Q Consensus 3 ~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~e 82 (495)
|++|+++|+.++++|++++++||+++++.+++++.+|+++||+.+++++|.+++++...+.++..++++.+.+.++++++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999888777788899999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceecc
Q 011010 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (495)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~ 162 (495)
|.++++....++.+..+.+.+|+|+|+|||||||++++||.+++++|++|++|++|+||+++++||+.++.+.+++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999976666655556678999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-CCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 163 Y-TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 163 ~-~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
. +..+|+.++.+++..+ .+||++||||||+.+.+..++.++..+...+ .||.++||+|++.++++...+..|+..+
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~-~~d~vllVvda~~g~~~~~~~~~~~~~~ 237 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEIT-NPDEIILVIDGTIGQQAGIQAKAFKEAV 237 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSS-CCSEEEEEEEGGGGGGHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHh-cCcceeEEeeccccHHHHHHHHHHhhcc
Confidence 6 6678887877888777 6899999999999988888888887665555 8999999999999998888888898777
Q ss_pred -CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCCCchHH
Q 011010 242 -SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPEL 320 (495)
Q Consensus 242 -~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~~~~~ 320 (495)
++.++|+||+|..++++.++++...++.||.|+|+||+++++.+|+|..++|+++|+||+..|++++.+.+++++ +++
T Consensus 238 ~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~ 316 (432)
T 2v3c_C 238 GEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EES 316 (432)
T ss_dssp CSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STT
T ss_pred cCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHH
Confidence 878999999999988888999999999999999999999999999999999999999999999999999999887 889
Q ss_pred hhccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchH
Q 011010 321 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDS 400 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~s 400 (495)
.+|+..++|+++||++|+++++||||+++||+||||++ .+.+....+.+++.+++|+|||+|||++||++| ++|+||
T Consensus 317 ~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~--~~i~~s 393 (432)
T 2v3c_C 317 IDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFG-GAMPKELSHLTEAKIKKYKVIISSMTKEERENP--KIIKAS 393 (432)
T ss_dssp HHHHCCSCCHHHHHHHHTTTTSCC------------------------CCHHHHHHHHHHHTTSCHHHHSSC--TTCCHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccc-cccchhhhcccHHHHHHHHHHHHhCCHHHhhCc--cccCHH
Confidence 99999999999999999999999999999999999987 432222223456789999999999999999998 578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhc
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMK 434 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 434 (495)
|++|||+|||++++|||+||+||++|++||+++.
T Consensus 394 r~~rI~~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 427 (432)
T 2v3c_C 394 RIRRIARGSGTTENDVREVLRYYETTKNAIDKLH 427 (432)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998753
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=2.4e-45 Score=370.25 Aligned_cols=293 Identities=43% Similarity=0.688 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHH
Q 011010 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (495)
Q Consensus 4 ~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL 83 (495)
++|+++|+.+++++++++++||+++++.+++++.+|+++||+++++.+|++++++.+.+.++.+++++.+++++++.++|
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred HhhcCCCCCC-CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceecc
Q 011010 84 CKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (495)
Q Consensus 84 ~~ll~~~~~~-~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~ 162 (495)
...++....+ +.+.. ++.+++++|++|+||||++++||.+++..|++|.++++|+||+++.+||+.++++.+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~-~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDK-IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSS-SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999876544 54543 378999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCc--chHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhcc
Q 011010 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQS 240 (495)
Q Consensus 163 ~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~--~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~ 240 (495)
....+|..++.+++..++..+||+|||||||+++ .++.++.++..+..+. .+|.+++|+|++.+++....++.|++.
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~-~~d~vllVvda~~g~~~~~~~~~~~~~ 238 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI-KPDEVTLVIDASIGQKAYDLASKFNQA 238 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHh-cCCEEEEEeeCCchHHHHHHHHHHHhh
Confidence 6778899998899999877799999999999998 7778888888887777 899999999999998888888888887
Q ss_pred CCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCC
Q 011010 241 VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 241 ~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~ 298 (495)
.++.++|+||+|..+++|.++++...++.||.|+++||+++++++|+|..++++++|+
T Consensus 239 ~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 239 SKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp CTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 8889999999999999999999999999999999999999999999999999999986
No 8
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=4.9e-43 Score=357.80 Aligned_cols=296 Identities=32% Similarity=0.587 Sum_probs=267.4
Q ss_pred hhhHHHHHHHHHHHhc-------------------cCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhch
Q 011010 2 VLAQLGGSISRAIQQM-------------------SNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNL 62 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l-------------------~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~ 62 (495)
||+.|.++|+...+++ .++++++|+++++.+++|+.+|+++||+++++.+|++++++.+..
T Consensus 7 mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~ 86 (328)
T 3e70_C 7 MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG 86 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 6899999998766643 337889999999999999999999999999999999999999998
Q ss_pred hhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCC-----CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 63 DDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTP-----KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 63 ~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~-----~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+++..+.++.+.+.++++++|.+++++.. +..+ ...++.+++|+|++|||||||+++|+.++...+.+|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 87 KKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp CEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 88888889999999999999999998753 2222 34567899999999999999999999999999999999999
Q ss_pred cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCE
Q 011010 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDL 217 (495)
Q Consensus 138 D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~ 217 (495)
|+||+++.+|+..++.+.+++++......+|...+.+++......++|++++||+|+.+.+..++.++..+..++ .||.
T Consensus 166 D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral-~~de 244 (328)
T 3e70_C 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT-KPNL 244 (328)
T ss_dssp CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH-CCSE
T ss_pred cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHh-cCCC
Confidence 999999999999999999999988888889999999999888778999999999999888888999998888888 8999
Q ss_pred EEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 218 VIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 218 vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
.++|+|++++++..++++.|.+..+++++|+||+|+++++|.++++...++.||.|+++||+++++++|+|..++++++|
T Consensus 245 ~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg 324 (328)
T 3e70_C 245 VIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFG 324 (328)
T ss_dssp EEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred CEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 011010 298 MG 299 (495)
Q Consensus 298 ~G 299 (495)
..
T Consensus 325 ~~ 326 (328)
T 3e70_C 325 EE 326 (328)
T ss_dssp --
T ss_pred Cc
Confidence 64
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=2.3e-41 Score=340.92 Aligned_cols=295 Identities=34% Similarity=0.509 Sum_probs=260.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
||++|+++|+.+++++.+++.++++++.+.+++|+.+|+.+|++++++.++.+++.....++.+..+.++.+.+.+.+.+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999998877766555456777888899999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec
Q 011010 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (495)
Q Consensus 82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~ 161 (495)
+|...++....+..+. ++.+++++|++|+||||++.+||.+++..|.+|.++++|++|+++.+|+..+....+++++.
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 9998887543444444 56799999999999999999999999999999999999999999999999888888999887
Q ss_pred cCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 162 ~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
.....+|..+.+.++..+...+||+|||||||+.+.+...+.++..+...+ .||.+++|+|+..+++..+.++.|++.+
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~-~~~~~~lv~~~~~~~~~~~~~~~~~~~~ 237 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-GPDEVLLVLDAMTGQEALSVARAFDEKV 237 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGTHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc-CCCEEEEEEeCCCcHHHHHHHHHHhhcC
Confidence 666678988888888888667899999999999888888888888888877 8999999999998888888888888778
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCC
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~G 299 (495)
++.++|+||+|..+++|.++++...++.||.|+++||+++||++|+|..++++++|+|
T Consensus 238 ~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 238 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999999999999999999987
No 10
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=3.2e-41 Score=343.49 Aligned_cols=288 Identities=28% Similarity=0.493 Sum_probs=251.8
Q ss_pred hhHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 3 LAQLGGSISRAIQQMSNA-TIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 3 ~~~l~~~l~~a~~~l~~~-~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
|..++++|+..++++.+. +.+||+ .+++|+.+|+++||+++++.+|++++++.+..+++.. .+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 80 (320)
T 1zu4_A 11 MLKSAFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVE 80 (320)
T ss_dssp THHHHHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHH
Confidence 466778888888888764 789986 6789999999999999999999999999877665432 17899999
Q ss_pred HHHhhcCCCC-----CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhh---
Q 011010 82 ELCKMLDPGK-----PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--- 153 (495)
Q Consensus 82 eL~~ll~~~~-----~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~--- 153 (495)
+|.+++++.. .++.+...++.+|+|+|++|+||||++.+||.+++..|++|.++++|+||+++.+|+..++.
T Consensus 81 ~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~ 160 (320)
T 1zu4_A 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRL 160 (320)
T ss_dssp HHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccc
Confidence 9999998765 56666666788999999999999999999999999999999999999999999999998887
Q ss_pred hcCccee-ccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh-----cCCCEEEEEeeCCcc
Q 011010 154 KAKIPFY-GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT-----VNPDLVIFVMDSSIG 227 (495)
Q Consensus 154 ~~~i~~~-~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i-----~~~d~vllVvDa~~g 227 (495)
+.+++++ ......+|...+.+++......+||+|||||||+.+.++.++.++..+...+ ..||.+++|+|++.+
T Consensus 161 ~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 161 NNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp CTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred cCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 7888887 4455667888888888887778999999999999998888888887666554 148999999999988
Q ss_pred ccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCc
Q 011010 228 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDW 301 (495)
Q Consensus 228 ~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi 301 (495)
++....++.|.+..++.++|+||+|.++++|.++++...++.||.|+++||+++++++|+|..++++++| |++
T Consensus 241 ~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~-~~~ 313 (320)
T 1zu4_A 241 QNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS-GFM 313 (320)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG-GGC
T ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC-Ccc
Confidence 8888888889888888999999999999999999999999999999999999999999999999999998 534
No 11
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=3.8e-41 Score=340.72 Aligned_cols=273 Identities=30% Similarity=0.487 Sum_probs=241.2
Q ss_pred HHHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhh
Q 011010 8 GSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (495)
Q Consensus 8 ~~l~~a~~~l~-~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l 86 (495)
++|+..++++. ++ .+||+ .+++|+.+|+++||+++++.+|++++++ .+|. +.++++++|.++
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~l~~~ 90 (306)
T 1vma_A 28 ETFFGRVVKLLKGK-KLDDE----TREELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEIILEI 90 (306)
T ss_dssp HHTHHHHHHHHTTC-CCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHHHHHH
Confidence 34445566665 45 88984 7899999999999999999999998865 2333 789999999999
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCC
Q 011010 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (495)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~ 166 (495)
++... ++.+...++.+|+|+|++||||||++.+||.+++..|.+|.++++|+||+++.+||..++.+.+++++......
T Consensus 91 l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~ 169 (306)
T 1vma_A 91 LNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGA 169 (306)
T ss_dssp TCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTC
T ss_pred hCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCcc
Confidence 98755 55555566789999999999999999999999999999999999999999999999999999999988877778
Q ss_pred ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc-----CCCEEEEEeeCCccccHHHHHHHHhccC
Q 011010 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV-----NPDLVIFVMDSSIGQAAFDQAQAFKQSV 241 (495)
Q Consensus 167 dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~-----~~d~vllVvDa~~g~~~~~~~~~f~~~~ 241 (495)
+|..++.+++..+...+||++||||||+.+....+++++..+...+. .|+.+++|+|+++++++..+++.|.+..
T Consensus 170 ~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~ 249 (306)
T 1vma_A 170 DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 249 (306)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 89888888888877789999999999998888889999887776652 4899999999998888888888898888
Q ss_pred CceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCC
Q 011010 242 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 298 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~ 298 (495)
+++++|+||+|.++++|.++++...++.||.|+++||+++||++|+|+.++++++|.
T Consensus 250 ~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~~ 306 (306)
T 1vma_A 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE 306 (306)
T ss_dssp CCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred CCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999999999999999999873
No 12
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.3e-39 Score=329.49 Aligned_cols=290 Identities=28% Similarity=0.426 Sum_probs=253.6
Q ss_pred ChhhHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHH
Q 011010 1 MVLAQLGGSISRAIQQMS-------NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRR 73 (495)
Q Consensus 1 m~~~~l~~~l~~a~~~l~-------~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 73 (495)
++|+.|+++|+.+.+++. +.+.+| +++.+++|+.+|+++||+++++.+|++++++.+..++ +++.+
T Consensus 55 ~~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~----~~~~~ 127 (359)
T 2og2_A 55 SDVEKVFSGFSKTRENLAVIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGS 127 (359)
T ss_dssp CHHHHHHHHTHHHHHHHTHHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHH
Confidence 368899999999988875 444444 7789999999999999999999999999999876554 35678
Q ss_pred HHHHHHHHHHHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh
Q 011010 74 IIQQAIFNELCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN 151 (495)
Q Consensus 74 ~~~~~v~~eL~~ll~~~~--~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~ 151 (495)
++.++++++|.+++++.. .++.+...++.+++|+|++|||||||+++||.++...+.+|.+.+.|+||++|.+|+..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~ 207 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIW 207 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHH
Confidence 899999999999998765 566665566789999999999999999999999998899999999999999999999999
Q ss_pred hhhcCcceeccCCC-CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh-----cCCCEEEEEeeCC
Q 011010 152 ATKAKIPFYGSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT-----VNPDLVIFVMDSS 225 (495)
Q Consensus 152 a~~~~i~~~~~~~~-~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i-----~~~d~vllVvDa~ 225 (495)
+.+.+++++..... .+|...+.+++..+...++|++++||+|+.+....++.++.+...++ ..|+++++|+|++
T Consensus 208 ~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt 287 (359)
T 2og2_A 208 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN 287 (359)
T ss_dssp HHHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGG
T ss_pred HHhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 98888998876666 78888888888876666789999999999888777888775433322 3699999999999
Q ss_pred ccccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 226 IGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 226 ~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
+++++..++..|.+..+++++|+||+|+++++|.++++...++.||.|+++||.++||++|+|..++++++|
T Consensus 288 tglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 288 TGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 999999999999887788999999999999999999999999999999999999999999999999999875
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=2.8e-39 Score=326.88 Aligned_cols=284 Identities=33% Similarity=0.512 Sum_probs=228.0
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHH
Q 011010 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (495)
Q Consensus 2 ~~~~l~~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (495)
+|+.|+++|+.+.+++.++..+++ ++++.+++|+.+|+++||+++++.+|++++++.+. +++.+++++
T Consensus 3 ~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (304)
T 1rj9_A 3 FFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKE 70 (304)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 689999999999999999888998 88999999999999999999999999999988654 335689999
Q ss_pred HHHhhcCCCCC-----CCCCC-------CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH
Q 011010 82 ELCKMLDPGKP-----SFTPK-------KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (495)
Q Consensus 82 eL~~ll~~~~~-----~~~~~-------~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~ 149 (495)
+|.+++++... ++.+. .+++.+++|+|++|||||||+++|+.++...+.+|.+.+.|+||+++.+|+.
T Consensus 71 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~ 150 (304)
T 1rj9_A 71 KLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 150 (304)
T ss_dssp HHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHH
T ss_pred HHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHH
Confidence 99999987543 34332 2356799999999999999999999999988999999999999999999999
Q ss_pred hhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh-----cCCCEEEEEeeC
Q 011010 150 QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT-----VNPDLVIFVMDS 224 (495)
Q Consensus 150 ~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i-----~~~d~vllVvDa 224 (495)
.+..+.+++++......+|...+.+++..+...+++++++||+|+.+....++.++.+...++ ..|+++++++|+
T Consensus 151 ~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 151 EWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH
Confidence 998888888877667778888888888876667899999999999887777888875544332 369999999999
Q ss_pred CccccHHHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 225 SIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 225 ~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
+++++..+++..|.+..+++++|+||.|.++++|.++++.+.++.||.|+|+||+++||++|+|..++++++|
T Consensus 231 ~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 231 VTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp TBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999999877778999999999999999999999999999999999999999999999999999987
No 14
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=7.2e-39 Score=340.22 Aligned_cols=289 Identities=28% Similarity=0.466 Sum_probs=251.4
Q ss_pred hhHHHHHHHHH-------HHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHH
Q 011010 3 LAQLGGSISRA-------IQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRII 75 (495)
Q Consensus 3 ~~~l~~~l~~a-------~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 75 (495)
|+.|.+.|+.. +.++.+.+.+|++ .+++|+.+|+++||+++++.+|++++++.+... ++++.+.+
T Consensus 196 ~~~l~~~l~kt~~~l~~~l~~~~~~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~----~~~~~~~~ 267 (503)
T 2yhs_A 196 FARLKRSLLKTKENLGSGFISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRK----QLRDAEAL 267 (503)
T ss_dssp HHHHHHHTHHHHTTSTTHHHHHHTTCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TCCBGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cCCCHHHH
Confidence 45555554443 4444445778875 678999999999999999999999999877653 45566789
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~ 155 (495)
.++|+++|.++|+....++.+.-.++.+++|+|++|||||||+++|+.++...+.+|.+.+.|+||.++.+||..++.+.
T Consensus 268 ~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~ 347 (503)
T 2yhs_A 268 YGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRN 347 (503)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhc
Confidence 99999999999987666666666667899999999999999999999999988999999999999999999999998888
Q ss_pred CcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhc-----CCCEEEEEeeCCccccH
Q 011010 156 KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATV-----NPDLVIFVMDSSIGQAA 230 (495)
Q Consensus 156 ~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~-----~~d~vllVvDa~~g~~~ 230 (495)
+++++......++...+.+++..+...++|++||||+|+.+.+..++.++.++...+. .|+.++||+|+++|+++
T Consensus 348 ~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 348 NIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp TCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred CceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 8988876666788888899998888889999999999999888889988876665442 48899999999999999
Q ss_pred HHHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCC
Q 011010 231 FDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 299 (495)
Q Consensus 231 ~~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~G 299 (495)
.++++.|++.++++++|+||+|++.++|.++++++.++.||.|+|+|++++||.+|++..|+++++|+.
T Consensus 428 l~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~ 496 (503)
T 2yhs_A 428 VSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARE 496 (503)
T ss_dssp HHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC-
T ss_pred HHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhccc
Confidence 999999999888999999999999999999999999999999999999999999999999999999876
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-36 Score=305.74 Aligned_cols=286 Identities=28% Similarity=0.438 Sum_probs=242.3
Q ss_pred hHHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHH
Q 011010 4 AQLGGSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (495)
Q Consensus 4 ~~l~~~l~~a~~~l~-~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~e 82 (495)
....+.|. .++++. +.+.+| +++.+++|+.+|+++||+.+++.+|++++++.+..++ +++.+.+.++++++
T Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 79 (302)
T 3b9q_A 8 SKTRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGSEIKDALKES 79 (302)
T ss_dssp HHHHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHH
Confidence 34445555 566655 466777 5678999999999999999999999999998876544 35668899999999
Q ss_pred HHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee
Q 011010 83 LCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (495)
Q Consensus 83 L~~ll~~~~--~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~ 160 (495)
|.+++++.. .++.+...++.+++|+|++|||||||+++||.++...+.+|.+.+.|+||++|.+|+..++.+.+++++
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEE
Confidence 999998765 566655556789999999999999999999999998899999999999999999999999988889887
Q ss_pred ccCCC-CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh-----cCCCEEEEEeeCCccccHHHHH
Q 011010 161 GSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT-----VNPDLVIFVMDSSIGQAAFDQA 234 (495)
Q Consensus 161 ~~~~~-~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i-----~~~d~vllVvDa~~g~~~~~~~ 234 (495)
..... .+|...+.+++..+...+++++++||+|+.+.....+.++.+...++ ..|+++++|+|++.++++..++
T Consensus 160 ~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~ 239 (302)
T 3b9q_A 160 VAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA 239 (302)
T ss_dssp CCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH
T ss_pred EecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH
Confidence 76665 68888888888776556789999999999887777888875443332 2699999999999999999988
Q ss_pred HHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC
Q 011010 235 QAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 235 ~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G 297 (495)
..|.+..+++++|+||+|+++++|.+++++..++.||.|+++||.++++++|+|..++++++|
T Consensus 240 ~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 240 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 889877788999999999999999999999999999999999999999999999999999875
No 16
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.8e-37 Score=268.38 Aligned_cols=112 Identities=40% Similarity=0.662 Sum_probs=99.1
Q ss_pred hhccccchhcHHHHHHHHHHHhccCChhHHhhcCC-CCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcch
Q 011010 321 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP-GFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMND 399 (495)
Q Consensus 321 ~~~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P-~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~ 399 (495)
++++.+|+|||+||++|+++++||||+++|++||| |++ ..++....+.++++++|++|||+|||++||++| .+|++
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~-~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P--~ii~~ 78 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLG-LKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNP--KIIDS 78 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCC-SSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCG--GGCCH
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchh-hccchhhHhhhHHHHHHHHHHHHhCCHHHHhCh--hhcCH
Confidence 46889999999999999999999999999999999 998 422322234578899999999999999999986 88999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 400 SRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 400 sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
||++|||+||||+|+|||+||+||++|++|||+|++
T Consensus 79 SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 114 (119)
T 2jqe_A 79 SRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMKK 114 (119)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999976
No 17
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=100.00 E-value=1.4e-36 Score=257.21 Aligned_cols=105 Identities=28% Similarity=0.496 Sum_probs=73.2
Q ss_pred hhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHHHHHHHh
Q 011010 328 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIAR 407 (495)
Q Consensus 328 ~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~ria~ 407 (495)
+||++||++|+++++||||+++|++||||++ .+......+.++++++|++|||+|||++||++| .+|++||++|||+
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~-~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P--~ii~~SR~~RIA~ 77 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMG-QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAA 77 (105)
T ss_dssp CCCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCC-cccchhhhhhhHHHHHHHHHHHHcCCHHHhhCh--hhcCHHHHHHHHc
Confidence 5999999999999999999999999999998 443222234578899999999999999999986 8899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 408 GSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 408 gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
||||+|+|||+||+||++|++|||+|++
T Consensus 78 GSG~~v~eVn~LLkqf~~m~kmmk~m~~ 105 (105)
T 1hq1_A 78 GSGMQVQDVNRLLKQFDDMQRMMKKMKK 105 (105)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999864
No 18
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=100.00 E-value=7.7e-36 Score=260.49 Aligned_cols=110 Identities=53% Similarity=0.901 Sum_probs=95.5
Q ss_pred ccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCcc-CchhhhhhhhhhhhhHhHhhcCCCHHhhcCCC-CCCc--chH
Q 011010 325 SEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL-MPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLM--NDS 400 (495)
Q Consensus 325 ~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~-~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i--~~s 400 (495)
..|+|||+||++|+++|+||||+++|++||||++ .. ++....++++++++|++|||+|||++||++.+ |.+| ++|
T Consensus 11 ~~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~-~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii~~~~S 89 (129)
T 1mfq_C 11 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPG 89 (129)
T ss_dssp CCSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC---------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHHHHCTH
T ss_pred ccCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCC-ccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccccCChH
Confidence 4689999999999999999999999999999998 41 23333456788999999999999999999822 3889 999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 011010 401 RIMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKG 435 (495)
Q Consensus 401 r~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~ 435 (495)
|++|||+||||+|+|||+||+||++|++|||+|++
T Consensus 90 Rk~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~ 124 (129)
T 1mfq_C 90 RIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGG 124 (129)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999976
No 19
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=2.8e-33 Score=282.01 Aligned_cols=258 Identities=23% Similarity=0.318 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHcCcChHHHHHHHHHH-HHhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeE
Q 011010 25 EKVLNECLNEITRALLQADVQFKLVREMQTNI-KKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSV 103 (495)
Q Consensus 25 e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~v 103 (495)
+.++.+.+++++.+|+++||+.+++.+|.+++ +..+... ..++ +.+.++++++|.++++.... ..+. .++.+
T Consensus 35 ~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~l~~~~~-~~~~-~~g~v 107 (296)
T 2px0_A 35 QSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG----GLTE-ENVVGKLQEILCDMLPSADK-WQEP-IHSKY 107 (296)
T ss_dssp ----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS----CCCT-TTHHHHHHHHHHTTSCCGGG-SCCC-CCSSE
T ss_pred ccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc----CCCH-HHHHHHHHHHHHHHhCCccc-cccc-CCCcE
Confidence 33567889999999999999999999999999 4444332 3344 56889999999999976432 2222 34679
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
++|+|++||||||++++||.++.. +|++|+++++|+||+++.+||..++...+++++.. .++.. ...++..+ .
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~--~ 181 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF--S 181 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG--G
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh--c
Confidence 999999999999999999999985 79999999999999999999999999999887653 23433 35556554 5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH-HHHHHhccCCceEEEEeCccCCCCccchh
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 261 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~-~~~~f~~~~~~~~vIlTK~D~~~~~g~~l 261 (495)
++|++||||||+.+.+..++.++..+.... .++.+++|+|++++..... .+..|. .+++.++|+||+|..+++|.++
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~-~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~ 259 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFE-SSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVF 259 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCC-TTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHH
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhc-CCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHH
Confidence 799999999999988777777765554333 5789999999998754443 344454 4677899999999999999999
Q ss_pred HHHHhcCCCeEEeccCCCc-ccccccCccchhhhccC
Q 011010 262 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 297 (495)
Q Consensus 262 s~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G 297 (495)
++...++.||.|+++||++ +|+.+|+|..++++++|
T Consensus 260 ~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 260 NILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 9999999999999999999 89999999999999886
No 20
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=100.00 E-value=4.1e-35 Score=250.13 Aligned_cols=105 Identities=53% Similarity=0.924 Sum_probs=91.3
Q ss_pred hhcHHHHHHHHHHHhccCChhHHhhcCCCCCCc-cCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCC-CCCcc--hHHHH
Q 011010 328 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSE-LMPKGREKESQAKIKRYMTMMDSMTNEELDSSN-PKLMN--DSRIM 403 (495)
Q Consensus 328 ~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~-~~~i~--~sr~~ 403 (495)
+||++||++|+++++||||+++|++||||++ . +.+....+.++++++|++|||+|||++||++.+ |.+|+ +||++
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~-~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii~~~~SR~~ 79 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFG-TDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQ 79 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSC-TTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHHHHSTHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCc-ccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCccccccchHHHH
Confidence 5999999999999999999999999999998 4 313333446788999999999999999999822 38888 99999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 011010 404 RIARGSGRQVREVMEMLEEYKRLAKIWSKM 433 (495)
Q Consensus 404 ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 433 (495)
|||+||||+|+|||+||+||++|++|||+|
T Consensus 80 RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m 109 (109)
T 1qb2_A 80 RVARGSGVSTRDVQELLTQYTKFAQMVKKM 109 (109)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999875
No 21
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=99.91 E-value=3.4e-25 Score=173.00 Aligned_cols=64 Identities=31% Similarity=0.479 Sum_probs=60.4
Q ss_pred hhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 011010 368 KESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSRIMRIARGSGRQVREVMEMLEEYKRLAKIWSKM 433 (495)
Q Consensus 368 ~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~ 433 (495)
+.+++++++++|||+|||++||++| .+|++||++|||+||||+++|||+||+||++|++|||+|
T Consensus 6 ~~~e~~lkr~~aII~SMT~~Er~nP--~ii~~SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m 69 (69)
T 1dul_A 6 FLEQKVLVRMEAIINSMTMKERAKP--EIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 69 (69)
T ss_dssp HHHCCHHHHHHHHHHTSCHHHHHCG--GGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHcCCHHHHhCc--cccCHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3567889999999999999999986 889999999999999999999999999999999999985
No 22
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=8.8e-26 Score=228.26 Aligned_cols=253 Identities=16% Similarity=0.214 Sum_probs=179.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
..+++.|+|+|.||||||||+|+|. |.++++++. .+.+++..+.... +
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~-----------~~~tT~~~~~~~~--~------------- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISP-----------KAGTTRMRVLGVK--N------------- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCCSCEEEEE--E-------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh------CCCccccCC-----------CCCceeeEEEEEE--e-------------
Confidence 3456899999999999999999999 999888877 4455655443222 1
Q ss_pred HHhhc-CCcEEEEeCCCCCcch--HHHHHHHH-HHHHHhcCCCEEEEEeeCCccccH--HHH-HHHHhccCCceEEEEeC
Q 011010 178 TFKKE-NCDLIIVDTSGRHKQE--AALFEEMR-QVSEATVNPDLVIFVMDSSIGQAA--FDQ-AQAFKQSVSVGAVIVTK 250 (495)
Q Consensus 178 ~~~~~-~~dvviIDTaG~~~~~--~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~--~~~-~~~f~~~~~~~~vIlTK 250 (495)
.. +++++|+||||.+... ..+.+.+. .....+..+|.+++|+|++.+... ... ...+.....+..+|+||
T Consensus 55 ---~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK 131 (308)
T 3iev_A 55 ---IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131 (308)
T ss_dssp ---ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred ---cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEEC
Confidence 12 6789999999986543 33444442 233445588999999999865432 223 34444433346999999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHHhh
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQ 322 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~ 322 (495)
+|............ +.+.+ +..+.+..++|+..|.| ++.|++.+.+.++ ++..++..+
T Consensus 132 ~Dl~~~~~~~~~~~-------------~~l~~~~~~~~~i~~vSA~~g~g-v~~L~~~l~~~l~~~~~~~~~~~~td~~~ 197 (308)
T 3iev_A 132 IDKIGPAKNVLPLI-------------DEIHKKHPELTEIVPISALKGAN-LDELVKTILKYLPEGEPLFPEDMITDLPL 197 (308)
T ss_dssp GGGSSSGGGGHHHH-------------HHHHHHCTTCCCEEECBTTTTBS-HHHHHHHHHHHSCBCCCSSCTTCCBCCCH
T ss_pred ccCCCCHHHHHHHH-------------HHHHHhccCCCeEEEEeCCCCCC-HHHHHHHHHHhCccCCCCCCcccccCCCH
Confidence 99863222222222 11211 22556778899999999 9999999999874 345566778
Q ss_pred ccccchhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhh-h--hhhhhHhHhhcCCCHHhhcCCCCCCc--
Q 011010 323 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES-Q--AKIKRYMTMMDSMTNEELDSSNPKLM-- 397 (495)
Q Consensus 323 ~~~~~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~-~--~~~~~~~~ii~smt~~er~~~~~~~i-- 397 (495)
++...++.++.+++++++ +|||.. ++ .+..... + +...+|.|+|. +||++||+++|
T Consensus 198 ~~~~~e~irek~~~~~~~------------eiP~~~-~v--~i~~~~~~~~~~~~~~i~a~i~----ve~~~~k~i~ig~ 258 (308)
T 3iev_A 198 RLLAAEIVREKAMMLTRE------------EVPTSI-AV--KINEIKPGDANPNMLVIKGEII----VDRENLKPIIIGK 258 (308)
T ss_dssp HHHHHHHHHHHHHHTCCT------------THHHHC-EE--EEEEEEECSSCTTSEEEEEEEE----ESSGGGHHHHHCG
T ss_pred HHHHHHHHHHHHHhhhhh------------hcCCee-EE--EeEEEEEccCCCCeEEEEEEEE----EccCCcceEEEcC
Confidence 888889999999999888 999965 44 3322221 1 24668999996 99999988888
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHH
Q 011010 398 NDSRIMRIARGSGRQVREVMEMLE 421 (495)
Q Consensus 398 ~~sr~~ria~gsg~~~~~v~~ll~ 421 (495)
+|+++|+|+..|+ +|+++|+.
T Consensus 259 ~g~~ik~i~~~ar---~~~~~~~~ 279 (308)
T 3iev_A 259 KGQRLKEIGKRAR---QELELILG 279 (308)
T ss_dssp GGHHHHHHHHHHH---HHHHHHHT
T ss_pred CcHHHHHHHHHHH---HHHHHHhC
Confidence 7999999999999 88887764
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=4e-24 Score=215.66 Aligned_cols=248 Identities=19% Similarity=0.171 Sum_probs=173.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|.||||||||+|+|. |.++++++. .+.+|+..+.... +
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~-----------~~~tTr~~i~~i~--~--------------- 51 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLL------GVKVAPISP-----------RPQTTRKRLRGIL--T--------------- 51 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCCSCEEEEE--E---------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHh------CCceeeecC-----------CCCceeEEEEEEE--E---------------
Confidence 35679999999999999999999 888887776 4445555443221 1
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHH-HHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhcc--CCceEEEEeCccCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMR-QVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
..+++++|+||||.+.....+.+.+. ....++..+|.+++|+|++.+....+ ....+... ..+..+|+||+|..
T Consensus 52 -~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 52 -EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp -ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred -eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 12678999999998765444444443 34466678999999999986543322 22334432 23469999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCc-hHHhhcccc
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQ-PELLQKLSE 326 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~-~~~~~~~~~ 326 (495)
........... .+..|.+..++|+..|.| ++.|++.+.+.++ ++.. ++..+++..
T Consensus 131 ~~~~~~~~~~~----------------~~~~~~~~~~iSA~~g~g-v~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~ 193 (301)
T 1wf3_A 131 KYPEEAMKAYH----------------ELLPEAEPRMLSALDERQ-VAELKADLLALMPEGPFFYPEDYAKSDQTFGEWV 193 (301)
T ss_dssp SSHHHHHHHHH----------------HTSTTSEEEECCTTCHHH-HHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHH
T ss_pred CchHHHHHHHH----------------HhcCcCcEEEEeCCCCCC-HHHHHHHHHHhcccCCCCCCcccccCCCCHHHHH
Confidence 43221222221 123455667899999999 9999999988764 3334 556677777
Q ss_pred chhcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhh-hhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHH
Q 011010 327 GNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES-QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIM 403 (495)
Q Consensus 327 ~~f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~-~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ 403 (495)
.+..++.+++++++ ++||.. .+ .+..... ++...++.+.|. +||++|+.++| +|+++|
T Consensus 194 ~e~~Re~~~~~l~~------------eiP~~~-~v--~i~~~~~~~~~~~~i~~~i~----ve~~~~k~iiig~~g~~lk 254 (301)
T 1wf3_A 194 AEILREEAMKRLWH------------EVPYAV-AT--KVEEVAERENGVLYIKAILY----VERPSQKAIVIGEGGRKIK 254 (301)
T ss_dssp HHHHHHHHHHTCCT------------THHHHC-EE--EEEEEEEETTTEEEEEEEEE----ESSHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhhc------------ccCceE-EE--EEEEEEecCCCeEEEEEEEE----EeeCCceEEEEeCCchHHH
Confidence 78889998888888 999865 33 3322221 234456888885 99999987788 789999
Q ss_pred HHHhhcCCCHHHHHHHHH
Q 011010 404 RIARGSGRQVREVMEMLE 421 (495)
Q Consensus 404 ria~gsg~~~~~v~~ll~ 421 (495)
+|+..|+ +|+++|+.
T Consensus 255 ~i~~~ar---~~~~~~~~ 269 (301)
T 1wf3_A 255 EIGQATR---KQLEALLG 269 (301)
T ss_dssp HHHHHHH---HHHHHHHT
T ss_pred HHHHHHH---HHHHHHHC
Confidence 9999999 88888775
No 24
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.2e-22 Score=204.80 Aligned_cols=250 Identities=18% Similarity=0.180 Sum_probs=168.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++.+|+|+|+||||||||+|.|. |.++++++. .+.+++..+.-+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~-----------~~~tTr~~~~gi~--~--------------- 52 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSR-----------KAQTTRHRIVGIH--T--------------- 52 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH------TCSEEECCC-----------CSSCCSSCEEEEE--E---------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------CCCccccCC-----------CCCcceeeEEEEE--E---------------
Confidence 35689999999999999999999 999988776 3344544332111 1
Q ss_pred hhcCCcEEEEeCCCCC-cchHHHHHHHH-HHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCccCCC
Q 011010 180 KKENCDLIIVDTSGRH-KQEAALFEEMR-QVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~-~~~~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
..++.++++||||.+ .....+.+.+. ....++..+|.+++|+|++. ... ...+..+.....+..+|+||+|...
T Consensus 53 -~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 53 -EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp -ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred -ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 125688999999987 33333322331 12344557899999999865 322 2233444433344689999999865
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC-------CCCchHHhhccccch
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGN 328 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~ 328 (495)
........+. .+.+...+.+..++|++.|.| +..|++.+.+.++ ++..++..+++...+
T Consensus 131 ~~~~~~~~l~-------------~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e 196 (301)
T 1ega_A 131 EKADLLPHLQ-------------FLASQMNFLDIVPISAETGLN-VDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASE 196 (301)
T ss_dssp CHHHHHHHHH-------------HHHTTSCCSEEEECCTTTTTT-HHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHH
T ss_pred cHHHHHHHHH-------------HHHHhcCcCceEEEECCCCCC-HHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHH
Confidence 2111222221 111111233567899999999 9999999998765 334455667777778
Q ss_pred hcHHHHHHHHHHHhccCChhHHhhcCCCCCCccCchhhhhhh-hhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHH
Q 011010 329 FTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKES-QAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRI 405 (495)
Q Consensus 329 f~~~d~~~ql~~~~k~g~~~~~~~~~P~~~~~~~~~~~~~~~-~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ri 405 (495)
..++.+++.+.+ ++||.. .+ .+....+ ++...++.|.|. +||++++.++| +|+|+|+|
T Consensus 197 ~~re~l~~~l~~------------e~p~~~-~v--~i~~~~~~~~~~~~i~~~i~----v~~~~~k~i~ig~~G~~~k~i 257 (301)
T 1ega_A 197 IIREKLMRFLGA------------ELPYSV-TV--EIERFVSNERGGYDINGLIL----VEREGQKKMVIGNKGAKIKTI 257 (301)
T ss_dssp HHHHHHHHHHGG------------GCCTTE-EE--EEEEEECCSSCSEEEEEEEE----ESSHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCC------------CCCeEE-EE--EEEEEEecCCCeEEEEEEEE----EEECCceEEEECCCcHHHHHH
Confidence 889999999988 999976 44 3322221 233557888885 99999987777 78999999
Q ss_pred HhhcCCCHHHHHHHHH
Q 011010 406 ARGSGRQVREVMEMLE 421 (495)
Q Consensus 406 a~gsg~~~~~v~~ll~ 421 (495)
+..|+ .|+++|+.
T Consensus 258 g~~ar---~~i~~~~~ 270 (301)
T 1ega_A 258 GIEAR---KDMQEMFE 270 (301)
T ss_dssp HHHHH---HHHHHHTT
T ss_pred HHHHH---HHHHHHHC
Confidence 99999 88877764
No 25
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=4e-17 Score=167.92 Aligned_cols=191 Identities=17% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch---hHHH----HHhhhhhcCcceeccCCCCC---hH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AFDQ----LKQNATKAKIPFYGSYTESD---PV 169 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~---a~dq----L~~~a~~~~i~~~~~~~~~d---p~ 169 (495)
+..+|+|+|.|||||||++++|+.++...|++|+++++|+..+. ++.+ ........++.+....+... ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999999999999999999999976543 2211 11111222333332222221 12
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEe
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 249 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlT 249 (495)
...++.+..+...+++++||||||....... ....+|.+++|+|+..+.........+.+ . +.++|+|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~----------~~~~aD~vl~V~d~~~~~~~~~l~~~~~~-~-p~ivVlN 225 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVA----------VANMVDTFVLLTLARTGDQLQGIKKGVLE-L-ADIVVVN 225 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHH----------HHTTCSEEEEEEESSTTCTTTTCCTTSGG-G-CSEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHH----------HHHhCCEEEEEECCCCCccHHHHHHhHhh-c-CCEEEEE
Confidence 3345566666667899999999998654322 12489999999998765432111111111 2 3589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccCCCcccc-----cccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 250 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-----~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
|+|.....+.. ....... +.+..+ ....|.+++|+..|.| ++.|++++.+.++
T Consensus 226 K~Dl~~~~~~~-~~~~~l~---------~~l~~~~~~~~~~~~~vi~iSA~~g~G-i~~L~~~i~~~~~ 283 (355)
T 3p32_A 226 KADGEHHKEAR-LAARELS---------AAIRLIYPREALWRPPVLTMSAVEGRG-LAELWDTVERHRQ 283 (355)
T ss_dssp CCCGGGHHHHH-HHHHHHH---------HHHHHHSTTCCSCCCCEEEEBGGGTBS-HHHHHHHHHHHHH
T ss_pred CCCCcChhHHH-HHHHHHH---------HHHhhccccccCCCCceEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 99985432211 1110000 000001 1124667899999999 9999999988764
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=9.8e-18 Score=178.31 Aligned_cols=233 Identities=14% Similarity=0.156 Sum_probs=140.7
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
...+.|+++++| .++..+.+|+..|++.-..+++..||.+++ +......+ ...+..+..++..++
T Consensus 148 ~~~~~a~~~l~g-------~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~-~~~~~~~~-------~~~i~~l~~~l~~~~ 212 (462)
T 3geh_A 148 QAAQTALAGLQG-------KLAHPIRQLRANCLDILAEIEARIDFEEDL-PPLDDEAI-------ISDIENIAAEISQLL 212 (462)
T ss_dssp HHHHHHHHHHHT-------TTHHHHHHHHHHHHHHHHHHHHHTTSSSSS-CCCCTTTH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhch-------hHHHHHHHHHHHHHHHHHHHHhhccccccC-ChhhHHHH-------HHHHHHHHHHHHHHH
Confidence 467899999999 788899999999999999999999997621 11111122 334567778888777
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC
Q 011010 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d 167 (495)
.........+. ...|+|+|.|||||||++|.|+ +.+.++++. .+.+++.-+...
T Consensus 213 ~~~~~~~~~r~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~-----------~~gtT~d~~~~~------- 266 (462)
T 3geh_A 213 ATKDKGELLRT--GLKVAIVGRPNVGKSSLLNAWS------QSDRAIVTD-----------LPGTTRDVVESQ------- 266 (462)
T ss_dssp TTHHHHHHHHH--CEEEEEEECTTSSHHHHHHHHH------HHHBSCCSC-----------CTTCCHHHHHHE-------
T ss_pred HHhhhhhhhcC--CCEEEEEcCCCCCHHHHHHHHh------CCCcccccC-----------CCCeeEEEEEEE-------
Confidence 64332222222 2359999999999999999999 544444443 111222111100
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHH--HHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCc
Q 011010 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE--MRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSV 243 (495)
Q Consensus 168 p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~e--l~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~ 243 (495)
....++++.|+||||...... ..+. +.+....+..+|.+++|+|++.+..... ....+.. . +
T Consensus 267 -----------i~~~g~~v~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-~-p 332 (462)
T 3geh_A 267 -----------LVVGGIPVQVLDTAGIRETSD-QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-R-P 332 (462)
T ss_dssp -----------EEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-S-C
T ss_pred -----------EEECCEEEEEEECCccccchh-HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-C-c
Confidence 011367899999999854332 2222 2334445558999999999986543322 2333332 3 4
Q ss_pred eEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 244 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 244 ~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
..+|+||+|....... +.+.++....+...+|+..|.| ++.|++.+.+.+..
T Consensus 333 iivV~NK~Dl~~~~~~------------------~~~~~~~~~~~~i~iSAktg~G-i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 333 LILVMNKIDLVEKQLI------------------TSLEYPENITQIVHTAAAQKQG-IDSLETAILEIVQT 384 (462)
T ss_dssp EEEEEECTTSSCGGGS------------------TTCCCCTTCCCEEEEBTTTTBS-HHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcchhh------------------HHHHHhccCCcEEEEECCCCCC-HHHHHHHHHHHHhc
Confidence 6999999998643211 1112222334567899999999 99999999887643
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=4.2e-18 Score=181.83 Aligned_cols=234 Identities=17% Similarity=0.197 Sum_probs=131.9
Q ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhc
Q 011010 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (495)
Q Consensus 8 ~~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll 87 (495)
.+.+.|+++|+| .++..+.+|+..|++.-..+++..||.++..+......+ ...+..+..+|.+++
T Consensus 156 ~~~~~a~~~l~G-------~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l-------~~~i~~l~~~l~~~~ 221 (476)
T 3gee_A 156 SAYRTAVSQMKG-------DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDEL-------TMQIETLRSEVNRLI 221 (476)
T ss_dssp HHHHHHHHHHHT-------HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-------cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHH-------HHHHHHHHHHHHHHH
Confidence 467889999999 899999999999999999999988887742221121122 223455666666665
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC
Q 011010 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d 167 (495)
.........++ ...|+|+|.|||||||++|+|+ +.++++++. .+.+++.-+.....
T Consensus 222 ~~~~~~~~~r~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~-----------~~gtT~d~~~~~i~----- 277 (476)
T 3gee_A 222 DSYQHGRIVSE--GVSTVIAGKPNAGKSTLLNTLL------GQERAIVSH-----------MPGTTRDYIEECFI----- 277 (476)
T ss_dssp HHHHHHHHHHH--CEEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEE-----
T ss_pred HHHHhhHhhcC--CCEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCceEEEEEEEEE-----
Confidence 43222211222 2359999999999999999999 777777766 34444443321111
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHH--HHHHHHhcCCCEEEEEeeCCccccH------HHHHHHHhc
Q 011010 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEM--RQVSEATVNPDLVIFVMDSSIGQAA------FDQAQAFKQ 239 (495)
Q Consensus 168 p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el--~~i~~~i~~~d~vllVvDa~~g~~~------~~~~~~f~~ 239 (495)
..++++.|+||||...... ..+.+ ......+..+|.+++|+|++..... ......+.
T Consensus 278 -------------~~g~~l~liDT~G~~~~~~-~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~- 342 (476)
T 3gee_A 278 -------------HDKTMFRLTDTAGLREAGE-EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP- 342 (476)
T ss_dssp -------------ETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-
T ss_pred -------------ECCeEEEEEECCCCCcchh-HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-
Confidence 1367899999999865332 22221 3334455689999999999865432 22222222
Q ss_pred cCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 240 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 240 ~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
. .+..+|+||+|...........+. +. .+.+...+|+..|.| ++.|++++.+.+.
T Consensus 343 ~-~piIvV~NK~Dl~~~~~~~~~~l~----------------~~-~~~~~i~vSAktg~G-I~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 A-AKFLTVANKLDRAANADALIRAIA----------------DG-TGTEVIGISALNGDG-IDTLKQHMGDLVK 397 (476)
T ss_dssp T-SEEEEEEECTTSCTTTHHHHHHHH----------------HH-HTSCEEECBTTTTBS-HHHHHHHHTHHHH
T ss_pred C-CCEEEEEECcCCCCccchhHHHHH----------------hc-CCCceEEEEECCCCC-HHHHHHHHHHHHh
Confidence 2 346899999998654321100011 10 124557789999999 9999999988764
No 28
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=9.1e-15 Score=150.11 Aligned_cols=188 Identities=17% Similarity=0.165 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------HHHHHhhhhhcCcceecc-------CCCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGS-------YTES 166 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------~dqL~~~a~~~~i~~~~~-------~~~~ 166 (495)
..+|+|+|+||||||||+|+|+.++...+.+|+|+..|++.... ...+..++....+-+... .+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 46899999999999999999999998889999999999976532 112222221111111100 1111
Q ss_pred ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEE
Q 011010 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 246 (495)
Q Consensus 167 dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~v 246 (495)
+ ..+++..+...+++++||||||+......+ ...+|.+++|+|++.+.+.......+.+ . +..+
T Consensus 154 ~----~~~~~~~~~~~~~~~iliDT~Gi~~~~~~l----------~~~~d~vl~V~d~~~~~~~~~i~~~il~-~-~~iv 217 (349)
T 2www_A 154 T----TNEAILLCEGAGYDIILIETVGVGQSEFAV----------ADMVDMFVLLLPPAGGDELQGIKRGIIE-M-ADLV 217 (349)
T ss_dssp T----HHHHHHHHHHTTCSEEEEECCCC--CHHHH----------HTTCSEEEEEECCC------------CC-S-CSEE
T ss_pred H----HHHHHHhhccCCCCEEEEECCCcchhhhhH----------HhhCCEEEEEEcCCcchhHHHhHHHHHh-c-CCEE
Confidence 1 223333344568999999999986443211 2378999999999865432111111111 2 3588
Q ss_pred EEeCccCCCCccch--hHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 247 IVTKMDGHAKGGGA--LSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 247 IlTK~D~~~~~g~~--ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
|+||+|.....+.. ...+. .... + .........+..++|++.|.| ++.|++++.+.++
T Consensus 218 VlNK~Dl~~~~~~~~~~~~l~~~l~~-~-------~~~a~~~~~~vi~iSA~~g~G-i~~L~~~I~~~~~ 278 (349)
T 2www_A 218 AVTKSDGDLIVPARRIQAEYVSALKL-L-------RKRSQVWKPKVIRISARSGEG-ISEMWDKMKDFQD 278 (349)
T ss_dssp EECCCSGGGHHHHHHHHHHHHHHHTT-C-------C-----CCCEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred EEeeecCCCchhHHHHHHHHHHHHHh-c-------CccccCCCceEEEEecCCCCC-HHHHHHHHHHHHH
Confidence 99999985321110 11110 0000 0 000001123456799999999 9999999988763
No 29
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.57 E-value=2e-16 Score=168.97 Aligned_cols=230 Identities=16% Similarity=0.175 Sum_probs=141.7
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhhcC
Q 011010 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLD 88 (495)
Q Consensus 9 ~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~ 88 (495)
+++.++++++| .+...++.|+..|+..-..++...+|.++ .+..... + ...+..+..+|..++.
T Consensus 169 ~~~~a~~~l~g-------~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i-------~~~~~~l~~eL~~l~~ 232 (482)
T 1xzp_A 169 SLKLSLRNLKG-------GLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-V-------VTRLERIKEKLTEELK 232 (482)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-H-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcch-------hHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-H-------HHHHHHHHHHHHHHHH
Confidence 56788999998 89999999999999988788888888663 1100000 1 2234566677766654
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCCh
Q 011010 89 PGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDP 168 (495)
Q Consensus 89 ~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp 168 (495)
........++ ...|+|+|.|||||||++|.|+ +.+.++++. .+.+|+.-+.....
T Consensus 233 ~~~~~~~~r~--~~kV~ivG~pnvGKSSLln~L~------~~~~a~vs~-----------~~gTT~d~~~~~i~------ 287 (482)
T 1xzp_A 233 KADAGILLNR--GLRMVIVGKPNVGKSTLLNRLL------NEDRAIVTD-----------IPGTTRDVISEEIV------ 287 (482)
T ss_dssp HHHHHHHHHH--CEEEEEECCHHHHTCHHHHHHH------HHTBCCCCC-----------SSCCSSCSCCEEEE------
T ss_pred hhhhhhhccC--CCEEEEECcCCCcHHHHHHHHH------CCCCCccCC-----------CCCeeeeeEEEEEe------
Confidence 3221111111 2469999999999999999999 555555655 34445443322111
Q ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCC-cchHHHHHH--HHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCc
Q 011010 169 VRIAVEGVETFKKENCDLIIVDTSGRH-KQEAALFEE--MRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSV 243 (495)
Q Consensus 169 ~~ia~~~l~~~~~~~~dvviIDTaG~~-~~~~~l~~e--l~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~ 243 (495)
..+++++|+||||.. ..... .+. +......+..+|.+++|+|++..... ......+ ... +
T Consensus 288 ------------~~g~~~~l~DTaG~~~~~~~~-ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~~-p 352 (482)
T 1xzp_A 288 ------------IRGILFRIVDTAGVRSETNDL-VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KNK-R 352 (482)
T ss_dssp ------------ETTEEEEEEESSCCCSSCCTT-CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TTS-S
T ss_pred ------------cCCeEEEEEECCCccccchhh-HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-cCC-C
Confidence 126789999999976 33211 000 11222333478999999999765332 2222222 233 4
Q ss_pred eEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 244 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 244 ~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..+|+||+|...... ..... + . +....+...+|++.|.| ++.|++++.+.+
T Consensus 353 iivV~NK~DL~~~~~--~~~~~------------~-~--~~~~~~~i~iSAktg~G-i~eL~~~l~~~~ 403 (482)
T 1xzp_A 353 YLVVINKVDVVEKIN--EEEIK------------N-K--LGTDRHMVKISALKGEG-LEKLEESIYRET 403 (482)
T ss_dssp EEEEEEECSSCCCCC--HHHHH------------H-H--HTCSTTEEEEEGGGTCC-HHHHHHHHHHHT
T ss_pred EEEEEECcccccccC--HHHHH------------H-H--hcCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 699999999854311 11111 0 0 01112457799999999 999999998875
No 30
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=1e-14 Score=142.02 Aligned_cols=206 Identities=17% Similarity=0.156 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------------HHHHHhhhhhcCcceecc-CCC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNATKAKIPFYGS-YTE 165 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------------~dqL~~~a~~~~i~~~~~-~~~ 165 (495)
++.+++++|.+||||||++++|+.+++ .|++|++|++|+..... .+.........+..+... ...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 356788899999999999999999999 99999999999864321 111000000000000000 000
Q ss_pred CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHH--------HH
Q 011010 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQ--------AF 237 (495)
Q Consensus 166 ~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~--------~f 237 (495)
........+.+..+. .+||++||||||...... .......+...+.. +.+++|+|++...+..+... ..
T Consensus 92 ~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 92 MEKFNEYLNKILRLE-KENDYVLIDTPGQMETFL-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp HTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHH-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhh-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 011222334444443 369999999999854321 11101223334436 89999999875544333211 11
Q ss_pred hccCCceEEEEeCccCCCCcc--chhHHHHhcCCCeE-Ee------------ccCCCcccccccCccchhhhccCCCCcH
Q 011010 238 KQSVSVGAVIVTKMDGHAKGG--GALSAVAATKSPVI-FI------------GTGEHMDEFEVFDVKPFVSRLLGMGDWS 302 (495)
Q Consensus 238 ~~~~~~~~vIlTK~D~~~~~g--~~ls~~~~~~~PI~-fi------------~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~ 302 (495)
....+ ..+|+||+|...... .+...+.... ++. .+ +..+.+.++....+..++|+..|.| ++
T Consensus 169 ~~~~p-~~iv~NK~D~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g-i~ 245 (262)
T 1yrb_A 169 RLGAT-TIPALNKVDLLSEEEKERHRKYFEDID-YLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG-FE 245 (262)
T ss_dssp HHTSC-EEEEECCGGGCCHHHHHHHHHHHHCHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT-HH
T ss_pred ccCCC-eEEEEecccccccccHHHHHHHHhChH-HHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc-HH
Confidence 12234 589999999864321 0011110000 000 00 0000011222223557789999999 99
Q ss_pred HHHHHHHHhC
Q 011010 303 GFMDKIHEVV 312 (495)
Q Consensus 303 ~L~e~i~~~~ 312 (495)
.|++++.+.+
T Consensus 246 ~l~~~i~~~~ 255 (262)
T 1yrb_A 246 DLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987765
No 31
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=1.3e-14 Score=148.45 Aligned_cols=190 Identities=16% Similarity=0.115 Sum_probs=106.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH-H------hhhhhcCcceeccCCCC---ChH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL-K------QNATKAKIPFYGSYTES---DPV 169 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL-~------~~a~~~~i~~~~~~~~~---dp~ 169 (495)
+..+|+++|+||+||||+++.|+..+...|.+|++++.|++++.....+ . .+....+..+....+.. ...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 4568999999999999999999999998899999999999875321111 0 00000111111111111 111
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEe
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 249 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlT 249 (495)
....+.+..+...+++++||||||....... ....+|.+++|+|++.+........... ..+ ..+|+|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~----------~~~~aD~vl~Vvd~~~~~~~~~l~~~~~-~~p-~ivv~N 202 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETE----------VARMVDCFISLQIAGGGDDLQGIKKGLM-EVA-DLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHH----------HHTTCSEEEEEECC------CCCCHHHH-HHC-SEEEEC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHH----------HHHhCCEEEEEEeCCccHHHHHHHHhhh-ccc-CEEEEE
Confidence 1223334444456899999999998753321 1238999999999975432100000101 123 589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccCCCccccc-----ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 250 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-----VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-----~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|+|...... +........ +.+..+. .+.+..++|+..|.| ++.|++.+.+.+
T Consensus 203 K~Dl~~~~~-~~~~~~~l~---------~~l~~~~~~~~~~~~~vi~iSA~~g~g-i~~L~~~l~~~~ 259 (341)
T 2p67_A 203 KDDGDNHTN-VAIARHMYE---------SALHILRRKYDEWQPRVLTCSALEKRG-IDEIWHAIIDFK 259 (341)
T ss_dssp CCCTTCHHH-HHHHHHHHH---------HHHHHSCCSBTTBCCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred CCCCCChHH-HHHHHHHHH---------HHHHhccccccCCCCcEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 999864211 111110000 0000011 133557899999999 999999998865
No 32
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.53 E-value=6.7e-14 Score=140.24 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCcch-----HHHHHHH-HHHHHHhcCCCEEEEEeeCC-cc---ccHHHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQE-----AALFEEM-RQVSEATVNPDLVIFVMDSS-IG---QAAFDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~-----~~l~~el-~~i~~~i~~~d~vllVvDa~-~g---~~~~~~~~~f~~~~~~~~vIlTK~D 252 (495)
.++++||||||..... ..+.+.+ ......+..+|.+++|+|++ .+ .+....+..+.....+..+|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4789999999986421 1112222 22345555899999999973 33 2223455555444345699999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhcc---CCCCcHHHHHHHHHhCCCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLL---GMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~---G~Gdi~~L~e~i~~~~~~~ 315 (495)
........+..+. +....+ ..+.|...+|+.. |.| +..|++.+.+.+++.
T Consensus 210 l~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~sa~~~~~~~g-v~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 210 LMDKGTDAMEVLT------------GRVIPLTLGFIGVINRSQEDIIAKKS-IRESLKSEILYFKNH 263 (315)
T ss_dssp SSCSSCCCHHHHT------------TSSSCCTTCEEECCCCCHHHHSSSCC-HHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHh------------CCCccCCCCeEEEecCChhhhccCCC-HHHHHHHHHHHHhCC
Confidence 8755433344332 111111 2345566777777 788 999999988887543
No 33
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=7.3e-14 Score=142.72 Aligned_cols=189 Identities=18% Similarity=0.188 Sum_probs=108.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh---H----HHHHhhhhhcCcceeccCCCCC---hH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA---F----DQLKQNATKAKIPFYGSYTESD---PV 169 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a---~----dqL~~~a~~~~i~~~~~~~~~d---p~ 169 (495)
+..+++|+|+|||||||+++.|+.++...+.+|++++.|++.... + ..+.......++.......... ..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 356899999999999999999999998889999999999854311 0 0000011111111111111111 11
Q ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEe
Q 011010 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVT 249 (495)
Q Consensus 170 ~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlT 249 (495)
....+++..+...+++++||||||+......+ ...+|.+++|+|+..+.+.........+ . +..+|+|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v----------~~~~d~vl~v~d~~~~~~~~~i~~~i~~-~-~~ivvlN 201 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAV----------ADLTDFFLVLMLPGAGDELQGIKKGIFE-L-ADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH----------HTTSSEEEEEECSCC------CCTTHHH-H-CSEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhH----------HhhCCEEEEEEcCCCcccHHHHHHHHhc-c-ccEEEEE
Confidence 22334444455579999999999997654221 1378999999998654321100000111 1 2477889
Q ss_pred CccCCCCccch---hHHHHhcCCCeEEeccCCCccccc-----ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 250 KMDGHAKGGGA---LSAVAATKSPVIFIGTGEHMDEFE-----VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 250 K~D~~~~~g~~---ls~~~~~~~PI~fi~~Ge~i~~l~-----~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
|+|........ ...+.. .+.-+. .+.+..++|++.|.| ++.|++.+.+..+
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~------------a~~l~~~~~~~~~~~vl~~Sal~g~g-i~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRA------------ALHILTPPSATWTPPVVTISGLHGKG-LDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHH------------HHTTBCCSBTTBCCCEEEEBTTTTBS-HHHHHHHHHHHHH
T ss_pred chhccCchhHHHHHHHHHHH------------HHHhccccccCCCCCEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 99964321111 111110 000011 123556799999999 9999999988753
No 34
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.48 E-value=2.8e-13 Score=134.40 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=82.7
Q ss_pred CCcEEEEeCCCCCcc-----hHHHHHHHH-HHHHHhcCCCEEE-EEeeCCccccH---HHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ-----EAALFEEMR-QVSEATVNPDLVI-FVMDSSIGQAA---FDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~-----~~~l~~el~-~i~~~i~~~d~vl-lVvDa~~g~~~---~~~~~~f~~~~~~~~vIlTK~D 252 (495)
.+++.|+||||.... .+....... .+...+..++.++ +|+|++.+... ...+..+.....+..+|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 378999999997531 111111121 1234444566554 79999754322 2344444433345699999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhC----CCCCchHHhhc---c
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPELLQK---L 324 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~----~~~~~~~~~~~---~ 324 (495)
...........+. .....+. .+.+...+|+..|.| ++.|++.+.+.. +.+..++..++ .
T Consensus 204 l~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~SA~~~~g-i~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 270 (299)
T 2aka_B 204 LMDEGTDARDVLE------------NKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGTP 270 (299)
T ss_dssp GSCTTCCCHHHHT------------TCSSCCTTCEEECCCCCCBCTTS-CBCHHHHHHHHHHHHHHCTTTGGGGGGCSHH
T ss_pred cCCCCchHHHHHh------------CCcCcCCCCcEEEECCChhhccc-cccHHHHHHHHHHHHhcCCccccchhhhCHH
Confidence 8654322223221 1111111 234667899999999 999999886643 23334444444 3
Q ss_pred ccchhcHHHHHHHHHH
Q 011010 325 SEGNFTLRIMYEQFQN 340 (495)
Q Consensus 325 ~~~~f~~~d~~~ql~~ 340 (495)
.-.++..+.++.++++
T Consensus 271 ~l~~~l~~~l~~~~~~ 286 (299)
T 2aka_B 271 YLQKVLNQQLTNHIRD 286 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446667777777777
No 35
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.46 E-value=1e-13 Score=131.42 Aligned_cols=180 Identities=13% Similarity=0.211 Sum_probs=107.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCC---CChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~---~dp~~ia~~~l~ 177 (495)
..+|+|+|.+||||||++++|+..+... +++++|+.|++..-....+.. .++++...... .-......+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR----FGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT----TTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh----CCCcEEEecCCceeecccHHHHHHHH
Confidence 4589999999999999999999887655 899999999976433333332 12222111110 011112222222
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH-HHHHhccCCceEEEEeCccCCCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
...++|++||||+|........ .. .++.+++|+|++.+...... ...+ ..+ ..+|+||+|....
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~---------~~-~~~~~i~vvd~~~~~~~~~~~~~~~--~~~-~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF---------DL-GENYRVVMVSVTEGDDVVEKHPEIF--RVA-DLIVINKVALAEA 169 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC---------CC-SCSEEEEEEEGGGCTTHHHHCHHHH--HTC-SEEEEECGGGHHH
T ss_pred --hcCCCCEEEEeCCCCCCCCchh---------cc-ccCcEEEEEeCCCcchhhhhhhhhh--hcC-CEEEEecccCCcc
Confidence 3357999999999952211100 12 56889999999876433221 1222 233 5899999997432
Q ss_pred ccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 257 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 257 ~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
......... +.+..+.+..+...+|+..|.| +..|++.+.+.+.
T Consensus 170 ~~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~~l~~~l~~~~~ 213 (221)
T 2wsm_A 170 VGADVEKMK------------ADAKLINPRAKIIEMDLKTGKG-FEEWIDFLRGILN 213 (221)
T ss_dssp HTCCHHHHH------------HHHHHHCTTSEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred hhhHHHHHH------------HHHHHhCCCCeEEEeecCCCCC-HHHHHHHHHHHHH
Confidence 111111111 1111222334557789999999 9999999988764
No 36
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.46 E-value=1e-13 Score=146.31 Aligned_cols=158 Identities=22% Similarity=0.297 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|+|||||||++|+|+ |.+.++++. .+.+|+....... . ..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~T~d~~~~~~--~----------------~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSA--E----------------WL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHE------EEECC----------------------CEEEEC--T----------------TC
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCCccceEEEEE--E----------------EC
Confidence 69999999999999999999 878777766 4555655442211 1 13
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHH-HHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQ-VSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~-i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~~~g~ 259 (495)
+.++.|+||||....+..+.+++.. ...++..+|.++||+|+..+....+ .+..+.....+..+|+||+|.......
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~ 129 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN 129 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh
Confidence 5678999999986433333344432 3345558999999999987654332 334344333456999999998543111
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
+ ..+..+ .+.+...+|+..|.| +..|++++.+.+++
T Consensus 130 ~-----------------~~~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 130 I-----------------YDFYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFKN 165 (436)
T ss_dssp C-----------------CSSGGG-SSCCCEECBTTTTBT-HHHHHHHHHHTGGG
T ss_pred H-----------------HHHHHc-CCCCeEEEeCcCCCC-hHHHHHHHHHhcCc
Confidence 1 111111 122346799999999 99999999988753
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.46 E-value=1.1e-13 Score=130.89 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+|+|.+||||||++++|. +.+ ++.++. .+.+++. +.++....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~------~~~~~~~~~~-----------~~~~t~~-~~~~~~~~--------------- 75 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLC------NQKRLAFASK-----------TPGRTQH-INYFSVGP--------------- 75 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHT------TCSSSSCTTC-----------CCCSCCC-EEEEEESC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCcceeecC-----------CCCcccc-eEEEEecC---------------
Confidence 4579999999999999999998 654 443333 1112221 11121111
Q ss_pred hhcCCcEEEEeCCCCCcc------hHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCc
Q 011010 180 KKENCDLIIVDTSGRHKQ------EAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~------~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~ 251 (495)
..+..+.|+||||.... .+.+...+.........+|.+++|+|++.+... ......+.....+..+|+||+
T Consensus 76 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~ 154 (223)
T 4dhe_A 76 -AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKC 154 (223)
T ss_dssp -TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECG
T ss_pred -CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecc
Confidence 13678999999997432 122222233444444457899999999864332 233444444333468999999
Q ss_pred cCCCCccc--hhHHHHhcCCCeEEeccCCCcccc-----cccCccchhhhccCCCCcHHHHHHHHHhCCCCC
Q 011010 252 DGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 316 (495)
Q Consensus 252 D~~~~~g~--~ls~~~~~~~PI~fi~~Ge~i~~l-----~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~~ 316 (495)
|....... ...... +.+..+ ....+...+|+..|.| +..|++.+.+.++...
T Consensus 155 Dl~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 155 DKLTRQESINALRATQ------------KSLDAYRDAGYAGKLTVQLFSALKRTG-LDDAHALIESWLRPAA 213 (223)
T ss_dssp GGSCHHHHHHHHHHHH------------HHHHHHHHHTCCSCEEEEEEBTTTTBS-HHHHHHHHHHHHC---
T ss_pred ccCChhhHHHHHHHHH------------HHHHhhhhcccCCCCeEEEeecCCCcC-HHHHHHHHHHhcCccC
Confidence 98643211 111111 111111 2334567799999999 9999999999886543
No 38
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.40 E-value=6e-13 Score=131.86 Aligned_cols=160 Identities=18% Similarity=0.055 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++|.|. |.+ ..++. .+.++........ .
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~-~~v~~-----------~~g~t~~~~~~~~--~---------------- 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSR-QRVGN-----------WAGVTVERKEGQF--S---------------- 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTC-EEEEE-----------CTTSSSEEEEEEE--E----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCC-cccCC-----------CCCeeEEEEEEEE--E----------------
Confidence 3579999999999999999999 766 34443 2222221111011 0
Q ss_pred hcCCcEEEEeCCCCCcch-----HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~-----~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
..+.++.|+||||..... ..+.+.+.+.......+|.+++|+|++...........+.+...+..+|+||+|...
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 125688999999975432 122223322222234899999999998643333333333333334699999999743
Q ss_pred Cccc---hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 256 KGGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 256 ~~g~---~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
..+. ........+ .|..++|+..|.| ++.|++.+.+.++..
T Consensus 127 ~~~~~~~~~~l~~~lg------------------~~~i~~SA~~g~g-i~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 127 KQNIRIEIDALSARLG------------------CPVIPLVSTRGRG-IEALKLAIDRYKANE 170 (274)
T ss_dssp HTTEEECHHHHHHHHT------------------SCEEECCCGGGHH-HHHHHHHHHTCCCCC
T ss_pred hhhHHHHHHHHHHhcC------------------CCEEEEEcCCCCC-HHHHHHHHHHHHhcC
Confidence 2211 111111111 2456789999999 999999998887643
No 39
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=5.1e-13 Score=141.02 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|.|||||||++|+|+ |.+.++|+. .+..|+......... .
T Consensus 3 ~v~ivG~pnvGKStL~nrl~------~~~~~~v~~-----------~~g~T~d~~~~~~~~------------------~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV------KKKKAIVED-----------EEGVTRDPVQDTVEW------------------Y 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH------C-------------------------CCSEEEEEE------------------T
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCCceecC-----------CCCCccceeeEEEEE------------------C
Confidence 69999999999999999999 888887776 556666544322211 2
Q ss_pred CCcEEEEeCCCCCcch-HHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCCCcc
Q 011010 183 NCDLIIVDTSGRHKQE-AALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~-~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
+..+.|+||||..... +.+.+.+ .....++..+|.+++|+|++.+....+ ....+.....+..+|+||+|.....
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~- 126 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF- 126 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH-
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc-
Confidence 5578999999976421 1122223 223455669999999999986644332 3333333333468999999974220
Q ss_pred chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... + +..+ .+.+...+|+..|.| +..|++++.+.++
T Consensus 127 -~~~~~~------------~-~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 165 (439)
T 1mky_A 127 -EREVKP------------E-LYSL-GFGEPIPVSAEHNIN-LDTMLETIIKKLE 165 (439)
T ss_dssp -HHHTHH------------H-HGGG-SSCSCEECBTTTTBS-HHHHHHHHHHHHH
T ss_pred -HHHHHH------------H-HHhc-CCCCEEEEeccCCCC-HHHHHHHHHHhcc
Confidence 001100 0 0011 122335789999999 9999999987764
No 40
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.40 E-value=1.4e-12 Score=119.91 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+...++. ...++. .+.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~t~-~~~~~~------------------- 65 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALF------NRKIAFVSK-----------TPGKTR-SINFYL------------------- 65 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHH------TSCCSCCCS-----------SCCCCC-CEEEEE-------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHH------cCccccccC-----------CCCCcc-CeEEEE-------------------
Confidence 3479999999999999999998 655332222 111111 111111
Q ss_pred hcCCcEEEEeCCCCCcc-----hHHHHHH-HHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhccCCceEEEEeCcc
Q 011010 181 KENCDLIIVDTSGRHKQ-----EAALFEE-MRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~-----~~~l~~e-l~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~~~~~~~vIlTK~D 252 (495)
.+..+.|+||||.... ....... ..........+|.+++|+|++..... ......+.....+..+|+||+|
T Consensus 66 -~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 66 -VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp -ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred -ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 2457899999996322 1112222 23334443466999999998765332 2233333333334699999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCccc-cc--ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDE-FE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~-l~--~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... ..... +.+.. +. ...+...+|+..|.| ++.|++++.+.++
T Consensus 145 l~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 145 KVKMSE--RAKKL------------EEHRKVFSKYGEYTIIPTSSVTGEG-ISELLDLISTLLK 193 (195)
T ss_dssp GSCGGG--HHHHH------------HHHHHHHHSSCCSCEEECCTTTCTT-HHHHHHHHHHHHC
T ss_pred cCChHH--HHHHH------------HHHHHHHhhcCCCceEEEecCCCCC-HHHHHHHHHHHhh
Confidence 864321 11110 01111 11 123556789999999 9999999988764
No 41
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=3e-12 Score=142.77 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=94.0
Q ss_pred CCcEEEEeCCCCCcch-----HHHHHHHHH-HHHHh-cCCCEEEEEeeCCccc---cHHHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQE-----AALFEEMRQ-VSEAT-VNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~-----~~l~~el~~-i~~~i-~~~d~vllVvDa~~g~---~~~~~~~~f~~~~~~~~vIlTK~D 252 (495)
..+++||||||+.... .+....+.. +...+ ..+|.+++|+|++.+. +....+..+.....+..+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4579999999987521 111112211 12222 3789999999998642 222455555554445799999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh---CC----CCCchHHhhccc
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV---VP----MDQQPELLQKLS 325 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~---~~----~~~~~~~~~~~~ 325 (495)
...+.......... +...-...|.+.+++|+..|.| ++.|.+.+.+. ++ .+..++...++.
T Consensus 229 lv~~~~~~~~il~~-----------~~~~l~lg~~~VV~iSA~~G~G-vdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~ 296 (772)
T 3zvr_A 229 LMDEGTDARDVLEN-----------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGTPY 296 (772)
T ss_dssp SSCTTCCSHHHHTT-----------CSSCCSSCEEECCCCCCEESSS-SEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHH
T ss_pred cCCcchhhHHHHHH-----------HhhhhhccCCceEEeccccccc-chhHHHHHHHHHHhccCCcchhhhhhcccHHH
Confidence 97665433332210 1111112456778899999999 99999998862 31 244456667777
Q ss_pred cchhcHHHHHHHHHH
Q 011010 326 EGNFTLRIMYEQFQN 340 (495)
Q Consensus 326 ~~~f~~~d~~~ql~~ 340 (495)
-.++.++.+++++++
T Consensus 297 LaEiLrEkL~~hi~~ 311 (772)
T 3zvr_A 297 LQKVLNQQLTNHIRD 311 (772)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 789999999999998
No 42
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.39 E-value=1.1e-12 Score=128.88 Aligned_cols=154 Identities=15% Similarity=0.022 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.|||||||++|.|. |.+.. ++. .+..+........ . ..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~-----------~pg~Tv~~~~~~~--~----------------~~ 46 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALT------NANQR-VGN-----------WPGVTVEKKTGEF--L----------------LG 46 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEE-EEE-----------CTTSSSEEEEEEE--E----------------ET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCCC-ccC-----------CCCceEEEEEEEE--E----------------EC
Confidence 69999999999999999998 76533 332 1222211111001 0 12
Q ss_pred CCcEEEEeCCCCCcchH-----HHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCc
Q 011010 183 NCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~-----~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
+.++.|+||||...... ...+.+.+..-....+|.+++|+|++...........+.+...+..+|+||+|.....
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 56889999999854432 2222332222112489999999999864333333444444334569999999975332
Q ss_pred cch--hH-HHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 258 GGA--LS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 258 g~~--ls-~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
+.. .. .....+ .|..++|+..|.| ++.|++.+.+.
T Consensus 127 ~~~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESLLG------------------CSVIPIQAHKNIG-IPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHHHC------------------SCEEECBGGGTBS-HHHHHHHHHTC
T ss_pred CcHHHHHHHHHHcC------------------CCEEEEECCCCCC-HHHHHHHHHhh
Confidence 111 11 111111 3567789999999 99999999887
No 43
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=5.4e-13 Score=141.46 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+|+|+|.|||||||++|.|+ |.+.++|+. .+.+++........ .
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~-----------~~g~t~~~~~~~~~------------------~ 68 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIYSSAE------------------W 68 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHE------EEEEC----------------------CEEEECT------------------T
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcceeEEEEEEE------------------E
Confidence 479999999999999999999 888877766 34455544322221 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHH-HHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMR-QVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
.+..+.|+||||+...++.+.+++. ....++..+|.++||+|+..+.... ..+..+.....+..+|+||+|......
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~ 148 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 148 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-------
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh
Confidence 3568899999997643332333442 2334455789999999998654433 334444443345689999999753211
Q ss_pred chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.. .....+. +.+...+|+..|.| +..|++.+.+.++
T Consensus 149 ~~-----------------~e~~~lg-~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 149 NI-----------------YDFYSLG-FGEPYPISGTHGLG-LGDLLDAVAEHFK 184 (456)
T ss_dssp -------------------CCSGGGS-SSSEEECCTTTCTT-HHHHHHHHHTTGG
T ss_pred hH-----------------HHHHHcC-CCceEEeecccccc-hHHHHHHHHhhcc
Confidence 10 0011111 22235789999999 9999999988764
No 44
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.38 E-value=2.3e-12 Score=114.67 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.|. +.+...++. .+.++........ . ..
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~~~~~~~--~----------------~~ 47 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL------KKRSAVVAD-----------VPGVTRDLKEGVV--E----------------TD 47 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH------HCCC----------------------CCEEEEE--E----------------ET
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCeeeccC-----------CCCceecceEEEE--E----------------eC
Confidence 58999999999999999999 444333222 1111111110000 0 12
Q ss_pred CCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCccCCCCccc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D~~~~~g~ 259 (495)
+..+.|+||||...... +...+ ......+..+|.+++|+|++...... .....+.....+..+|+||+|.......
T Consensus 48 ~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 126 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELY 126 (161)
T ss_dssp TEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGG
T ss_pred CceEEEEECCCCCCccc-hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHh
Confidence 45789999999764221 11111 12334455889999999998643322 2223333222346999999998543111
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
+ +.+..+ .+.+...+|+..|.| ++.+++++.+.+|
T Consensus 127 ~-----------------~~~~~~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 127 L-----------------GPLYGL-GFGDPIPTSSEHARG-LEELLEAIWERLP 161 (161)
T ss_dssp C-----------------GGGGGG-SSCSCEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred H-----------------HHHHhC-CCCCeEEEecccCCC-hHHHHHHHHHhCc
Confidence 1 111111 122456789999999 9999999988764
No 45
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.37 E-value=7.3e-12 Score=115.56 Aligned_cols=160 Identities=20% Similarity=0.140 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+++|.+||||||+++.|. +.+ +..++. ...++.. +.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~t~~-~~~~~------------------ 66 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI------NRKNLARTSS-----------KPGKTQT-LNFYI------------------ 66 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH------TC------------------------CC-EEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCCccccCC-----------CCCceee-EEEEE------------------
Confidence 4579999999999999999998 543 222222 1111211 11111
Q ss_pred hhcCCcEEEEeCCCCCcc------hHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCc
Q 011010 180 KKENCDLIIVDTSGRHKQ------EAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~------~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~ 251 (495)
.+..+.|+||||+... .+...............+|.+++|+|++.+....+ ....+.....+..+|+||+
T Consensus 67 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 144 (195)
T 1svi_A 67 --INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144 (195)
T ss_dssp --ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred --ECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 1346899999996432 11121122333333334589999999986543322 2333433333469999999
Q ss_pred cCCCCccch--hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 252 DGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~--ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|........ ..... +.+. .....+...+|+..|.| ++.|++++.+.+
T Consensus 145 Dl~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 193 (195)
T 1svi_A 145 DKIPKGKWDKHAKVVR------------QTLN-IDPEDELILFSSETKKG-KDEAWGAIKKMI 193 (195)
T ss_dssp GGSCGGGHHHHHHHHH------------HHHT-CCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHH------------HHHc-ccCCCceEEEEccCCCC-HHHHHHHHHHHh
Confidence 986432110 01111 0010 11233556799999999 999999987765
No 46
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.35 E-value=1.3e-13 Score=149.64 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=86.6
Q ss_pred cEEEEeCCCCCcchHH-HHHH--H-HHHHHHhcCCCEEEEEeeCCcc---ccHHHHHHHHhccCCceEEEEeCccCCCCc
Q 011010 185 DLIIVDTSGRHKQEAA-LFEE--M-RQVSEATVNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 185 dvviIDTaG~~~~~~~-l~~e--l-~~i~~~i~~~d~vllVvDa~~g---~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~ 257 (495)
.++||||||....... +.+. . ..+...+..+|.+++|+|++.. ......+..+........+|+||+|.....
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 6899999998752211 1110 1 1122233478999999999752 222333444443323469999999986432
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh-C-CCCCchHHhhccccchhcHHHHH
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV-V-PMDQQPELLQKLSEGNFTLRIMY 335 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~-~-~~~~~~~~~~~~~~~~f~~~d~~ 335 (495)
.......... ..+.+...+|.+.. ..... . +++.. +..+++...|+ ++++
T Consensus 235 -el~~~~~~l~---------------~s~~~i~~vs~l~~---------~~~~~~~~~~~~~-~~~~~~~~~E~--e~l~ 286 (550)
T 2qpt_A 235 -QLMRVYGALM---------------WALGKVVGTPEVLR---------VYIGSFWSQPLLV-PDNRRLFELEE--QDLF 286 (550)
T ss_dssp -HHHHHHHHHH---------------HHHHHHHCCSSCCC---------EEESCCSSSCCSS-CTTHHHHHHHH--HHHH
T ss_pred -HHHHHHHHhh---------------cchhheeechHhhh---------hccccCCCCcccC-CCCHHHHHHHH--HHHH
Confidence 1111111000 00000011111100 00000 0 11111 23455555565 7777
Q ss_pred HHHHHHhccCChhHHhhcCCCCCCccCch-hhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCc--chHHHHHH
Q 011010 336 EQFQNILKMGPIGQVFSMLPGFSSELMPK-GREKESQAKIKRYMTMMDSMTNEELDSSNPKLM--NDSRIMRI 405 (495)
Q Consensus 336 ~ql~~~~k~g~~~~~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i--~~sr~~ri 405 (495)
.++ + ++||.. .+ . +++........++.|.|. +||+++++++| ++++++.|
T Consensus 287 ~~l-~------------elP~~~-~v--~~i~~~~~~~~~~~I~a~I~----v~~~sqk~i~iGk~g~~~~li 339 (550)
T 2qpt_A 287 RDI-Q------------GLPRHA-AL--RKLNDLVKRARLVRVHAYII----SYLKKEMPTVFGKENKKKQLI 339 (550)
T ss_dssp HHH-H------------TTGGGH-HH--HHHHHHHHHHHHHHHHHHHH----HHHHHHSCSSSCHHHHHHHHH
T ss_pred HHh-h------------hccHHH-HH--HHHHHHhccCCeEEEEEEEE----EeecccceeEECCchHHHHHH
Confidence 775 5 899865 34 2 222222235668999995 99999999888 34454444
No 47
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=2.5e-12 Score=135.63 Aligned_cols=188 Identities=16% Similarity=0.218 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~ 155 (495)
+..+.+++.+.+...... .....+..|+++|.|||||||++|+|. |....+++. .+.+++.
T Consensus 152 v~~L~~~i~~~l~~~~~~--~~~~~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~-----------~~gtT~d 212 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRD 212 (436)
T ss_dssp HHHHHHHHHHTGGGCCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC-------------------
T ss_pred hHHHHHHHHHhcCccccc--cccccCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC-----------CCCceee
Confidence 355666676666432111 112235689999999999999999999 877777765 4445544
Q ss_pred CcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchH-----HHHHHHHHHHHHhcCCCEEEEEeeCCccccH
Q 011010 156 KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATVNPDLVIFVMDSSIGQAA 230 (495)
Q Consensus 156 ~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~-----~l~~el~~i~~~i~~~d~vllVvDa~~g~~~ 230 (495)
-+..... ..+..+.|+||||...... +....+..+ ..+..+|.+++|+|++.+...
T Consensus 213 ~~~~~~~------------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~-~~~~~ad~~llv~D~~~~~s~ 273 (436)
T 2hjg_A 213 AVDTSFT------------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL-KAIDRSEVVAVVLDGEEGIIE 273 (436)
T ss_dssp -CCEEEE------------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH-HHHHHCSEEEEEEETTTCCCH
T ss_pred eeEEEEE------------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHH-HHHHhCCEEEEEEcCCcCCcH
Confidence 3321111 1245689999999632111 111122222 233378999999999875443
Q ss_pred HH--HHHHHhccCCceEEEEeCccCCCCccchhH-HHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHH
Q 011010 231 FD--QAQAFKQSVSVGAVIVTKMDGHAKGGGALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDK 307 (495)
Q Consensus 231 ~~--~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls-~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~ 307 (495)
.+ .+....+...+..+|+||+|.......... ...... +.+. .....|..++|++.|.| +..|++.
T Consensus 274 ~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---------~~l~-~~~~~~~~~~SA~tg~~-v~~l~~~ 342 (436)
T 2hjg_A 274 QDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR---------DHFQ-FLDYAPILFMSALTKKR-IHTLMPA 342 (436)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH---------HHCG-GGTTSCEEECCTTTCTT-GGGHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH---------Hhcc-cCCCCCEEEEecccCCC-HHHHHHH
Confidence 22 333333333456899999998654221111 110000 1111 11234678899999999 9999999
Q ss_pred HHHhC
Q 011010 308 IHEVV 312 (495)
Q Consensus 308 i~~~~ 312 (495)
+.+.+
T Consensus 343 i~~~~ 347 (436)
T 2hjg_A 343 IIKAS 347 (436)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 48
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.35 E-value=2.7e-12 Score=117.44 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|++||||||+++.|+ +.+...++. .+.+++....-...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~------~~~~~~~~~-----------~~~~t~~~~~~~~~------------------ 48 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA------GREAAIVTD-----------IAGTTRDVLREHIH------------------ 48 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS-----------STTCCCSCEEEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcceeeC-----------CCCceeceeeEEEE------------------
Confidence 3469999999999999999999 655433333 11222211110000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHH-HHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFE-EMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~-el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
..+.++.++||||.......... .+.........+|.+++|+|++... +.......+.+. ..+..+|+||+|..
T Consensus 49 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 49 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 12446789999998543211111 1222333345899999999997533 222222222221 12358999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... . .+. .. ...+...+|++.|.| ++.|++++.+.++
T Consensus 129 ~~~---~----------~~~-------~~-~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 129 GET---L----------GMS-------EV-NGHALIRLSARTGEG-VDVLRNHLKQSMG 165 (172)
T ss_dssp CCC---C----------EEE-------EE-TTEEEEECCTTTCTT-HHHHHHHHHHHC-
T ss_pred cch---h----------hhh-------hc-cCCceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 221 0 000 00 122456799999999 9999999988874
No 49
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.35 E-value=1.2e-11 Score=115.59 Aligned_cols=151 Identities=25% Similarity=0.214 Sum_probs=94.0
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 102 ~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.... ..+. ....++++..... ....+.+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-~~~~--~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-NWSK--AGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHHT--TSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-HHHh--cCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 468887 5569999999999999999999999999999865432 2221 1223344444222 33445555554
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHhc------cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFKQ------SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~~------~~~~~~vIlTK~D~ 253 (495)
+.||+|||||||..... . ...+..+|.+++|+++..... .......+.+ ..++ ++|+|++|.
T Consensus 74 -~~yD~viiD~~~~~~~~--~-------~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~ 142 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSVI--T-------SAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIE 142 (206)
T ss_dssp -TTSSEEEEECCSSSSHH--H-------HHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCT
T ss_pred -CCCCEEEEECCCCCCHH--H-------HHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCC
Confidence 46999999999876321 1 112225799999999874322 2223333332 2344 999999996
Q ss_pred CCCc-cchhHHHHhcCCCe
Q 011010 254 HAKG-GGALSAVAATKSPV 271 (495)
Q Consensus 254 ~~~~-g~~ls~~~~~~~PI 271 (495)
.... ..+...+...+.|+
T Consensus 143 ~~~~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 143 MATMLNVLKESIKDTGVKA 161 (206)
T ss_dssp TEEEEHHHHHHHHHHTCCB
T ss_pred CchHHHHHHHHHHHcCCce
Confidence 5432 22334444445444
No 50
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.34 E-value=2.6e-11 Score=119.99 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=93.2
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh---------------------hhhcCc
Q 011010 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (495)
Q Consensus 100 ~~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~---------------------a~~~~i 157 (495)
.+++|+|++. +|+||||++.+||..|++.|++|++|++|++++.....+... ....++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 3568999875 699999999999999999999999999999886543332110 001344
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-cc-
Q 011010 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QA- 229 (495)
Q Consensus 158 ~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~- 229 (495)
.+..... ..+|.++ ..+.++.++ ..||+||||||+.....+.. .+.. .+|.+++|+.+... ..
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~~---~aD~vilVv~~~~~~~~~ 231 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQ-----LFSK---FTGNVVYVVNSENNNKDE 231 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHH-----HHHH---HHCEEEEEEETTSCCHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHH-----HHHH---HCCEEEEEEeCCCCcHHH
Confidence 4443221 2344433 334455553 57999999999976443211 1112 35899999998643 22
Q ss_pred HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 230 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 230 ~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
.......+.+ ..++.++|+|++|...
T Consensus 232 ~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 232 VKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 2223344443 2456799999998653
No 51
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.34 E-value=4.8e-11 Score=119.78 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh---------------------hhhcCcc
Q 011010 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKIP 158 (495)
Q Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~---------------------a~~~~i~ 158 (495)
+++|+|+|. +|+||||++.+||..|++.|++|++|++|+.++.....+... ....++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 183 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 183 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCEE
Confidence 568999986 699999999999999999999999999999776554333210 0113444
Q ss_pred eeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-c-cH
Q 011010 159 FYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-Q-AA 230 (495)
Q Consensus 159 ~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~-~~ 230 (495)
+..... ..+|.++ ..+.++.+. +.||+||||||+.....+.. .....+|.+++|+.+... . ..
T Consensus 184 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~--------~l~~~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 184 VITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA--------VVGRSVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH--------HHGGGCSEEEEEEETTTSCTTHH
T ss_pred EEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH--------HHHHHCCEEEEEEcCCCChHHHH
Confidence 443221 2344332 344455553 57999999999976543211 112258999999998643 2 23
Q ss_pred HHHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 231 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 231 ~~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
......+.+ ..++.++|+|++|....
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 333444443 34567999999987543
No 52
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.34 E-value=5.6e-11 Score=118.65 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=95.7
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH------------hhh---------hhcCc
Q 011010 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------QNA---------TKAKI 157 (495)
Q Consensus 100 ~~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~------------~~a---------~~~~i 157 (495)
++++|+|++. +|+||||++.+||..|++.|++|++|++|+.++.....+. ... ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 3568888865 6999999999999999999999999999998875433331 100 11233
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-cc-
Q 011010 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QA- 229 (495)
Q Consensus 158 ~~~~~~~-~~dp~~i-----a~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~- 229 (495)
.+..... ..+|.++ ..+.++.+. +.||+||||||+.....+. ......+|.+++|+.+... ..
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da--------~~l~~~aD~vllVv~~~~~~~~~ 241 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDA--------AIVGRHVGTTLMVARYAVNTLKE 241 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH--------HHHTTTCSEEEEEEETTTSBHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHH--------HHHHHHCCeEEEEEeCCCCcHHH
Confidence 3333222 2344433 334455543 4799999999997654321 1122368999999998743 22
Q ss_pred HHHHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 230 AFDQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 230 ~~~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
.....+.+.. ..++.++|+|++|....
T Consensus 242 ~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 242 VETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 2233344443 25678999999986543
No 53
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=2e-12 Score=132.59 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=80.4
Q ss_pred CCcEEEEeCCCCCcc-----hHHHHHHHHH-HHHHhc-CCCEEEEEeeCCcccc---HHHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQ-VSEATV-NPDLVIFVMDSSIGQA---AFDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~-----~~~l~~el~~-i~~~i~-~~d~vllVvDa~~g~~---~~~~~~~f~~~~~~~~vIlTK~D 252 (495)
.++++||||||.... .....+.+.. +...+. ..+.+++|+|+..+.. ....++.+.....+..+|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 478999999997542 1111112211 222332 4456777888764322 22344554443345799999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhC----CCCCchHHhhc---c
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVV----PMDQQPELLQK---L 324 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~----~~~~~~~~~~~---~ 324 (495)
.......+...... +.. .+ ..+.+...+|+..|.| +..|++.+.+.- +.+..++..++ .
T Consensus 209 l~~~~~~~~~~~~~-----------~~~-~l~~~~~~v~~~SA~~~~~-i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~ 275 (353)
T 2x2e_A 209 LMDEGTDARDVLEN-----------KLL-PLRRGYIGVVNRSQKDIDG-KKDITAALAAERKFFLSHPSYRHLADRMGTP 275 (353)
T ss_dssp GSCTTCCCHHHHTT-----------CSS-CCTTCEEECCCCCHHHHHT-TCCHHHHHHHHHHHHHHCTTTGGGGGGCSHH
T ss_pred ccCcchhHHHHHhC-----------Ccc-cccCCceEEEeCCcccccc-cccHHHHHHHHHHHhccCCcccccHHhhCHH
Confidence 86553323333321 111 11 1234567799999999 999988886621 22233444444 3
Q ss_pred ccchhcHHHHHHHHHH
Q 011010 325 SEGNFTLRIMYEQFQN 340 (495)
Q Consensus 325 ~~~~f~~~d~~~ql~~ 340 (495)
.-.++..+.++.++++
T Consensus 276 ~l~~~l~e~l~~~i~~ 291 (353)
T 2x2e_A 276 YLQKVLNQQLTNHIRD 291 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345666667777776
No 54
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=6.6e-12 Score=133.12 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcC
Q 011010 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (495)
Q Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~ 156 (495)
..+.+++.+.+...... ........|+++|.+||||||+++.|. +.+...++. .+.+++..
T Consensus 173 ~~L~~~i~~~l~~~~~~--~~~~~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~-----------~~gtt~~~ 233 (456)
T 4dcu_A 173 GDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDA 233 (456)
T ss_dssp HHHHHHHHTTGGGSCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------------CT
T ss_pred HHHHHHHHhhccccccc--ccccccceeEEecCCCCCHHHHHHHHh------CCCccccCC-----------CCCeEEEE
Confidence 44556665555422111 112345679999999999999999999 877777776 44445443
Q ss_pred cceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcch-----HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH
Q 011010 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF 231 (495)
Q Consensus 157 i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~-----~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~ 231 (495)
+..... ..+..+.|+||||..... .+....+. ....+..+|.+++|+|++.+....
T Consensus 234 ~~~~~~------------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~-~~~~~~~ad~~llviD~~~~~~~~ 294 (456)
T 4dcu_A 234 VDTSFT------------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLR-ALKAIDRSEVVAVVLDGEEGIIEQ 294 (456)
T ss_dssp TSEEEE------------------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHH-HHHHHHHCSEEEEEEETTTCCCHH
T ss_pred EEEEEE------------------ECCceEEEEECCCCCcCcccchHHHHHHHHH-HHHHHhhCCEEEEEEeCCCCcCHH
Confidence 322111 125578999999953211 01111122 222334789999999998754332
Q ss_pred --HHHHHHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCccc---ccccCccchhhhccCCCCcHHHHH
Q 011010 232 --DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE---FEVFDVKPFVSRLLGMGDWSGFMD 306 (495)
Q Consensus 232 --~~~~~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~---l~~f~p~~~vS~l~G~Gdi~~L~e 306 (495)
..+....+.-.+..+|+||+|............. +.+.. ...+.|..++|++.|.| ++.|++
T Consensus 295 ~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~ 361 (456)
T 4dcu_A 295 DKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFE------------ENIRDHFQFLDYAPILFMSALTKKR-IHTLMP 361 (456)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHH------------HHHHHHCGGGTTSCEEECCTTTCTT-GGGHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHH------------HHHHHhcccCCCCCEEEEcCCCCcC-HHHHHH
Confidence 2233333333446899999998654322111111 11111 11245678899999999 999999
Q ss_pred HHHHhC
Q 011010 307 KIHEVV 312 (495)
Q Consensus 307 ~i~~~~ 312 (495)
.+.+.+
T Consensus 362 ~i~~~~ 367 (456)
T 4dcu_A 362 AIIKAS 367 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 55
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.31 E-value=4.8e-12 Score=123.42 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh-hhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN-ATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~-a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
++..|+|+|.+|||||||++.|. |.++...+.. +. +++........
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~------~~~~~~~~~~-----------~~~~t~~~~~~~~~---------------- 67 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL------RKQAFESKLG-----------SQTLTKTCSKSQGS---------------- 67 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH------TSCCSCCCTT-----------SCCCCCSCEEEEEE----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHh------CCCCcccCCC-----------CCceeeeeEEEEEE----------------
Confidence 35679999999999999999999 7665443321 11 12111110010
Q ss_pred HhhcCCcEEEEeCCCCCcch---HHHHHHHH-HHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHhcc-----CCceEEEE
Q 011010 179 FKKENCDLIIVDTSGRHKQE---AALFEEMR-QVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFKQS-----VSVGAVIV 248 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~---~~l~~el~-~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~~~-----~~~~~vIl 248 (495)
..++++.|+||||..... ....+++. .+...+..+|.+++|+|++.-.. .......+.+. ..+..+|+
T Consensus 68 --~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 68 --WGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp --ETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred --eCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 125789999999975432 23333332 23345558999999999975221 11122222221 22457777
Q ss_pred e-CccCCCCccchhHHHHhcCCC-eE-EeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 249 T-KMDGHAKGGGALSAVAATKSP-VI-FIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 249 T-K~D~~~~~g~~ls~~~~~~~P-I~-fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
| |+|.... .....+...... +. ++ +.+.. +..|.+ ..+|+..|.| ++.|++.+.+.++
T Consensus 146 ~nK~Dl~~~--~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~-~~~SA~~~~g-v~~l~~~i~~~~~ 207 (260)
T 2xtp_A 146 THKEDLNGG--SLMDYMHDSDNKALSKLV---AACGGRICAFNN-RAEGSNQDDQ-VKELMDCIEDLLM 207 (260)
T ss_dssp ECGGGGTTC--CHHHHHHHCCCHHHHHHH---HHTTTCEEECCT-TCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred EcccccCCc--cHHHHHHhcchHHHHHHH---HHhCCeEEEecC-cccccccHHH-HHHHHHHHHHHHH
Confidence 7 9998632 122211100000 00 00 11111 112555 7789999999 9999999887663
No 56
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.30 E-value=1.5e-11 Score=126.28 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+.+|+++|.+||||||++++|+ +..+. +... ++++.. +.+.. ..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~-----------~~~t~~-~~~~~-~~--------------- 210 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASY-----------PFTTRG-INVGQ-FE--------------- 210 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECC-----------TTCSSC-EEEEE-EE---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCC-----------CCeeec-eeEEE-EE---------------
Confidence 34589999999999999999999 66532 2221 112211 10000 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHH--HHHHHHHHhcCCCEEEEEeeCCccc--cHHH---HHHHHhcc--CCceEEEEeC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFE--EMRQVSEATVNPDLVIFVMDSSIGQ--AAFD---QAQAFKQS--VSVGAVIVTK 250 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~--el~~i~~~i~~~d~vllVvDa~~g~--~~~~---~~~~f~~~--~~~~~vIlTK 250 (495)
..+.++.++||||.......... +...+......+|.+++|+|++... +... ....+... ..+..+|+||
T Consensus 211 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 211 -DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp -ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred -ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 12467899999998432110000 0112222223689999999987543 3222 22222221 2345899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+|...... +.... +... ....|...+|+..|.| ++.|++++.+.+
T Consensus 290 ~Dl~~~~~--~~~~~------------~~~~--~~~~~~~~iSA~~g~g-i~~l~~~i~~~l 334 (357)
T 2e87_A 290 IDVADEEN--IKRLE------------KFVK--EKGLNPIKISALKGTG-IDLVKEEIIKTL 334 (357)
T ss_dssp TTTCCHHH--HHHHH------------HHHH--HTTCCCEECBTTTTBT-HHHHHHHHHHHH
T ss_pred cccCChHH--HHHHH------------HHHH--hcCCCeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 99865421 11110 0000 1123456789999999 999999998876
No 57
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.30 E-value=3.5e-11 Score=120.34 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-----------HHHHHh------------h--hhh
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ------------N--ATK 154 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-----------~dqL~~------------~--a~~ 154 (495)
.+++|+|+|..|+||||++.+||.+|+++|++|++|++|++.... .+.+.. . ...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~~ 119 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 119 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccCC
Confidence 467899999999999999999999999999999999999865322 122211 0 012
Q ss_pred cCcceeccCCC-----C-ChH-HHHHHHHHHH-hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 155 AKIPFYGSYTE-----S-DPV-RIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 155 ~~i~~~~~~~~-----~-dp~-~ia~~~l~~~-~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
.++.+...... . ... ......+... ..+.||+||||||+...... +..++..+|.+++|+++..
T Consensus 120 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~--------~~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 120 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG--------FAAPLQHADQAVVVTANDF 191 (307)
T ss_dssp GGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG--------GGGGGGTCSEEEEEECSSH
T ss_pred CCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHH--------HHHHHHHCCEEEEEecCcH
Confidence 23433321111 0 011 1112233331 24579999999988654321 1122337899999999864
Q ss_pred c--ccHHHHHHHHhc-----cCCceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 227 G--QAAFDQAQAFKQ-----SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 227 g--~~~~~~~~~f~~-----~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
. .........+.. ..++.++|+|+++.. ..+-.+....+.|+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCce
Confidence 2 122223333332 234568999999853 123334444565543
No 58
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.6e-12 Score=138.40 Aligned_cols=207 Identities=15% Similarity=0.187 Sum_probs=97.1
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHHHHhhchhhhccCCChHHHHHHHHHHHHHhh--
Q 011010 9 SISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM-- 86 (495)
Q Consensus 9 ~l~~a~~~l~~~~~~~e~~i~~~l~ei~~~Lle~dv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l-- 86 (495)
+|+..+++..+ |++.+++. +|-+..+++ ....++++..+....+....+|...+.+.+.+.+.++
T Consensus 40 ~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (611)
T 3izq_1 40 TLKAQLQDYQG---WDNLSLKL-------ALFDNNFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISI 106 (611)
T ss_dssp THHHHHHHHHC---CCSSHHHH-------HHHHTTTCS---SHHHHHHHHTTCSSSCC----------------------
T ss_pred HHHHHHHHhcC---cchhHHHH-------HHHHhhccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhcc
Confidence 34444444544 77776654 444555555 3455677777776666666667666666666665554
Q ss_pred ------------cC-----------------------------CCCC-----CCCCCCCCCeEEEEEcCCCCcHHHHHHH
Q 011010 87 ------------LD-----------------------------PGKP-----SFTPKKGKPSVIMFVGLQGSGKTTTCTK 120 (495)
Q Consensus 87 ------------l~-----------------------------~~~~-----~~~~~~~~~~vI~ivG~~GvGKTTl~~k 120 (495)
++ .... ...........|+++|.+|+|||||+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~lkV~ivG~~n~GKSTLin~ 186 (611)
T 3izq_1 107 SQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGR 186 (611)
T ss_dssp ------------------------------------------------------CCCCCCCCEEEEECCSSSCHHHHHHH
T ss_pred cccccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHhccCCceEEEEEECCCCCHHHHHHH
Confidence 00 0000 0000112345799999999999999999
Q ss_pred HHHHHHHcCCceEEEec--------------cCCcch-hHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcCCc
Q 011010 121 YAYYHQKKGWKPALVCA--------------DTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (495)
Q Consensus 121 La~~l~~~G~kVaIVs~--------------D~~R~~-a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~d 185 (495)
|. +....+... ..|..+ ..+++..... .++.+..... .+...++.
T Consensus 187 Ll------~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~-~GiTid~~~~-------------~~~~~~~~ 246 (611)
T 3izq_1 187 LL------YDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE-RGVTVSICTS-------------HFSTHRAN 246 (611)
T ss_dssp HH------SCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHH-TTTCCSCSCC-------------EEECSSCE
T ss_pred HH------HhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhh-CCeeEeeeeE-------------EEecCCce
Confidence 98 432222211 001000 1222221111 1221111000 01123678
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc---------ccHHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 186 LIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG---------QAAFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 186 vviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g---------~~~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
+.|+||||.... .......+..+|.+++|+|++.+ ......+..... ..+..++|+||+|...
T Consensus 247 ~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 247 FTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred EEEEECCCCccc-------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 999999997432 12233445589999999999864 112222222222 2344688899999865
No 59
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.29 E-value=5.8e-11 Score=113.61 Aligned_cols=160 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-------------HHHHHhhhh--------h-cCcc
Q 011010 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNAT--------K-AKIP 158 (495)
Q Consensus 102 ~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-------------~dqL~~~a~--------~-~~i~ 158 (495)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++.+.. .+.+..... . .++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 4677774 569999999999999999999999999999965432 222221100 0 2233
Q ss_pred eeccCCCCCh-----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHH
Q 011010 159 FYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAF 231 (495)
Q Consensus 159 ~~~~~~~~dp-----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~ 231 (495)
+.......+. .....+.++.+. ..||+||||||+..... ....+..+|.+++|+++.... ...
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~---------~~~~~~~ad~vi~v~~~~~~~~~~~~ 152 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD---------AMSAMLSGEEALLVTNPEISCLTDTM 152 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH---------HHHHHTTCSEEEEEECSCHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH---------HHHHHHHCCeEEEEecCCcccHHHHH
Confidence 2221110001 122334444443 57999999999865422 122334789999999987421 222
Q ss_pred HHHHHHhc-cCCceEEEEeCccCCCCccchhHHHHhcCCCe
Q 011010 232 DQAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 271 (495)
Q Consensus 232 ~~~~~f~~-~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI 271 (495)
.....+.+ ..++.++|+|+++..........+....+.|+
T Consensus 153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 193 (237)
T 1g3q_A 153 KVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPL 193 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCE
T ss_pred HHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccc
Confidence 23333333 23567999999987544322233334445554
No 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.29 E-value=1.2e-11 Score=121.84 Aligned_cols=157 Identities=17% Similarity=0.088 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.|+ |.+. .+.. .+..+........ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~-----------~~~~t~~~~~~~~------------------~~ 47 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALT------GLRQ-HVGN-----------WPGVTVEKKEGIM------------------EY 47 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHH------TTCE-EEEE-----------CTTSSCEEEEEEE------------------EE
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCc-ccCC-----------CCCeEEEeeEEEE------------------EE
Confidence 579999999999999999998 7655 3332 1111111000000 01
Q ss_pred cCCcEEEEeCCCCCcchHHHHHH-HHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC-CceEEEEeCccCCCCccc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEE-MRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~e-l~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~-~~~~vIlTK~D~~~~~g~ 259 (495)
.+..+.|+||||..........+ +.+..-....+|.+++|+|++...........+.+.. .+..+|+||+|...+.+.
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 127 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGA 127 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTC
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCccccc
Confidence 25678999999975432211111 2222222248999999999987544333333333322 446899999996432111
Q ss_pred ---hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 260 ---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 260 ---~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
........+ .|..++|+..|.| +..|++.+.+.+.
T Consensus 128 ~~~~~~l~~~lg------------------~~~~~~Sa~~g~g-i~~l~~~i~~~~~ 165 (271)
T 3k53_A 128 KIDIKKMRKELG------------------VPVIPTNAKKGEG-VEELKRMIALMAE 165 (271)
T ss_dssp CCCHHHHHHHHS------------------SCEEECBGGGTBT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CcEEEEEeCCCCC-HHHHHHHHHHHHh
Confidence 111121122 2456789999999 9999999887753
No 61
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.28 E-value=2.8e-11 Score=116.27 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=89.8
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHH-------------HHhhh------------
Q 011010 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQ-------------LKQNA------------ 152 (495)
Q Consensus 100 ~~~vI~ivG-~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dq-------------L~~~a------------ 152 (495)
..++|+|++ ..|+||||++.+||.+|+++ |++|++|++|++++..... +....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 356888885 45999999999999999998 9999999999874433221 11110
Q ss_pred -hhcCcceeccCCCCCh-----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 153 -TKAKIPFYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 153 -~~~~i~~~~~~~~~dp-----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
...++.+......... .....+.+..+. ..||+||||||+..... ....+..+|.+++|+.+..
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~---------~~~~l~~ad~viiv~~~~~ 152 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHV---------GVWVLEHLDELCIVTTPSL 152 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTT---------HHHHGGGCSEEEEEECSSH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchH---------HHHHHHHCCEEEEEecCcH
Confidence 1133433332211000 122344454443 47999999998865332 1223347899999999873
Q ss_pred cc--cHHHHHHHHhc---cCCceEEEEeCccCCCC
Q 011010 227 GQ--AAFDQAQAFKQ---SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 227 g~--~~~~~~~~f~~---~~~~~~vIlTK~D~~~~ 256 (495)
.. ......+.+.. .....++|+|+++....
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 153 QSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp HHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 21 12223333332 13457999999986543
No 62
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.27 E-value=4.1e-11 Score=116.79 Aligned_cols=160 Identities=16% Similarity=0.157 Sum_probs=92.6
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhH-------------HHHHhhh--------hhcCcce
Q 011010 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNA--------TKAKIPF 159 (495)
Q Consensus 102 ~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~-------------dqL~~~a--------~~~~i~~ 159 (495)
++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.+... +.+.... +..++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 467776 56699999999999999999999999999999754332 2221100 0123333
Q ss_pred eccCCCCCh-----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHH
Q 011010 160 YGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFD 232 (495)
Q Consensus 160 ~~~~~~~dp-----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~ 232 (495)
.......++ .....+.+..+. ..||+||||||+..... . ...+..+|.+++|+++.... ....
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~-------~~~~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--A-------VIAIAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--H-------HHHHHHSSEEEEEECSSHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--H-------HHHHHHCCEEEEEeCCChhHHHHHHH
Confidence 331111111 122233444443 58999999999865422 1 11122579999999886321 2222
Q ss_pred HHHHHhc-cCCceEEEEeCccCCCCccchhHHHHhcCCCe
Q 011010 233 QAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 271 (495)
Q Consensus 233 ~~~~f~~-~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI 271 (495)
....+.+ ..++.++|+|++|..........+....+.|+
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~ 192 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKV 192 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCE
T ss_pred HHHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCe
Confidence 2333322 24567999999987543312222333345554
No 63
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.26 E-value=2.6e-11 Score=127.95 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+..|+|+|+|||||||++|.|+ |....+++. .+.+++.-+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~------g~~~~~v~~-----------~~gtT~d~~~~~i~----------------- 224 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL------NKERALVSP-----------IPGTTRDPVDDEVF----------------- 224 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------CC------CCEEEE-----------------
T ss_pred cCceEEEECCCCCCHHHHHHHHh------CCcccccCC-----------CCCCcCCceEEEEE-----------------
Confidence 35689999999999999999999 888777776 33444432211110
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHH-----HHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhccCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEM-----RQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el-----~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~~~~~~~vIlTK~D 252 (495)
..+.++.++||||.........+.+ .+....+..+|.+++|+|++.+.... ...........+..+|+||+|
T Consensus 225 -~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 225 -IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp -ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred -ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 1255788999999743211100100 11223344789999999998654322 222333333345689999999
Q ss_pred CCCCccchhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............. ... +.+. ...+.|..++|++.|.| +..|++.+.+.+
T Consensus 304 l~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 353 (439)
T 1mky_A 304 LVVHREKRYDEFTKLFR---------EKLY-FIDYSPLIFTSADKGWN-IDRMIDAMNLAY 353 (439)
T ss_dssp GSTTGGGCHHHHHHHHH---------HHCG-GGTTSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHH---------HHhc-cCCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 8643221111110 000 1111 11244667899999999 999999998765
No 64
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.26 E-value=3.1e-11 Score=118.55 Aligned_cols=156 Identities=21% Similarity=0.146 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.|||||||+++.|. |.+.. +.. .+..+........ .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~~-----------~pg~tv~~~~~~~--~---------------- 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT------GTKQY-VAN-----------WPGVTVEKKEGVF--T---------------- 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TTCEE-EEE-----------CTTSCCEEEEEEE--E----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC-----------CCCceEEEEEEEE--E----------------
Confidence 3469999999999999999999 76654 222 1111111110000 0
Q ss_pred hcCCcEEEEeCCCCCcchHH-HHHHH-HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 181 KENCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~-l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
..++.+.|+||||....... ..+.+ ...... ..+|.+++|+|++...........+.+...+..+|+||+|.....+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccc
Confidence 12568899999997533211 11122 222222 3899999999998754444333444443334699999999743221
Q ss_pred c---hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 259 G---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 259 ~---~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
. ........+ .|.+.+|+..|.| ++.|++.+.+..
T Consensus 128 i~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~~ 165 (258)
T 3a1s_A 128 MKIDRYELQKHLG------------------IPVVFTSSVTGEG-LEELKEKIVEYA 165 (258)
T ss_dssp CCBCHHHHHHHHC------------------SCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC------------------CCEEEEEeeCCcC-HHHHHHHHHHHh
Confidence 1 111111111 2556789999999 999999987764
No 65
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.26 E-value=2.8e-11 Score=124.82 Aligned_cols=186 Identities=19% Similarity=0.140 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhcCCCCC--CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhh
Q 011010 76 QQAIFNELCKMLDPGKP--SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT 153 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~ 153 (495)
+..+..+|..+...... ....+.+ ..+|+|+|++||||||++|.|+ |..+ .++. ...+|
T Consensus 153 i~~l~~~l~~~~~~r~~~r~~r~~~~-~~~V~lvG~~naGKSTLln~L~------~~~~-~~~~-----------~~~~T 213 (364)
T 2qtf_A 153 INKLMKELESIKIFKEKSIESNKRNN-IPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVDT-----------KLFTT 213 (364)
T ss_dssp HHHHHHHHHHHHC--------------CCEEEEECBTTSSHHHHHHHHH------CC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CcEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------Ccccc
Confidence 45566777777653221 1112222 2369999999999999999999 7654 3332 22333
Q ss_pred hcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCC-cchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HH
Q 011010 154 KAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRH-KQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AF 231 (495)
Q Consensus 154 ~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~-~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~ 231 (495)
+....-... ..+.++.++||||+. +....+.+........+..+|.+++|+|++.... ..
T Consensus 214 ~d~~~~~i~------------------~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~ 275 (364)
T 2qtf_A 214 MSPKRYAIP------------------INNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI 275 (364)
T ss_dssp CCSCEEEEE------------------ETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH
T ss_pred cCCEEEEEE------------------ECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH
Confidence 322111110 124578999999963 2223344444445555558999999999875431 11
Q ss_pred -------HHHHHHhccCCceEEEEeCccCCCCccch-hHHHHhcCCCeEEeccCCCc-ccc-cccCccchhhhccCCCCc
Q 011010 232 -------DQAQAFKQSVSVGAVIVTKMDGHAKGGGA-LSAVAATKSPVIFIGTGEHM-DEF-EVFDVKPFVSRLLGMGDW 301 (495)
Q Consensus 232 -------~~~~~f~~~~~~~~vIlTK~D~~~~~g~~-ls~~~~~~~PI~fi~~Ge~i-~~l-~~f~p~~~vS~l~G~Gdi 301 (495)
..+..+...-.+..+|.||+|.....-.. ..... .+ ..+ ....+..++|++.|.| +
T Consensus 276 ~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~-------------~l~~~l~~~~~~~~~~SA~~g~g-i 341 (364)
T 2qtf_A 276 ETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVE-------------KLSKELYSPIFDVIPISALKRTN-L 341 (364)
T ss_dssp HHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHH-------------HHHHHHCSCEEEEEECBTTTTBS-H
T ss_pred HHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHH-------------HHHHHhcCCCCcEEEEECCCCcC-H
Confidence 11222221123468999999986432100 01110 00 011 0111236789999999 9
Q ss_pred HHHHHHHHHhC
Q 011010 302 SGFMDKIHEVV 312 (495)
Q Consensus 302 ~~L~e~i~~~~ 312 (495)
+.|++.+.+.+
T Consensus 342 ~~L~~~I~~~l 352 (364)
T 2qtf_A 342 ELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 66
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.25 E-value=1.3e-10 Score=112.70 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=87.6
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH--------------hh----------hhhcC
Q 011010 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--------------QN----------ATKAK 156 (495)
Q Consensus 102 ~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~--------------~~----------a~~~~ 156 (495)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++.+.....+. .. ....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 5788875 45999999999999999999999999999996543322211 00 01123
Q ss_pred cceeccCCCCC----hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 157 IPFYGSYTESD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 157 i~~~~~~~~~d----p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
+.+.......+ ......+.+..+....||+||||||+..... ...++..+|.+++|+++.... ..
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~---------~~~~l~~ad~vi~v~~~~~~s~~~~ 153 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG---------ALMALYFADEAIITTNPEVSSVRDS 153 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH---------HHHHHHTCSEEEEEECSSHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH---------HHHHHHhCCEEEEEecCChhHHHHH
Confidence 43333222111 1223445555554338999999999865321 112222789999999987421 12
Q ss_pred HHHHHHHhccC---------CceEEEEeCccCC
Q 011010 231 FDQAQAFKQSV---------SVGAVIVTKMDGH 254 (495)
Q Consensus 231 ~~~~~~f~~~~---------~~~~vIlTK~D~~ 254 (495)
......+.... ...++|+|++|..
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred HHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 22233333211 3569999999853
No 67
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.25 E-value=2.9e-11 Score=116.04 Aligned_cols=141 Identities=12% Similarity=0.056 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHH--------------------hhh----------
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--------------------QNA---------- 152 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~--------------------~~a---------- 152 (495)
+|+|.|..|+||||++.+||.+|+++|++|++|++|++ +.....+. ...
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNP 80 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCC
Confidence 36779999999999999999999999999999999995 43322211 100
Q ss_pred -----------hhcCcce-eccC------CCC-ChH-HHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHh
Q 011010 153 -----------TKAKIPF-YGSY------TES-DPV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT 212 (495)
Q Consensus 153 -----------~~~~i~~-~~~~------~~~-dp~-~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i 212 (495)
...++.+ .... ... .+. ....+.+..+....||+||||||+..... ...++
T Consensus 81 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~---------~~~~l 151 (254)
T 3kjh_A 81 KVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHL---------TRGTA 151 (254)
T ss_dssp CCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTC---------CHHHH
T ss_pred chhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHH---------HHHHH
Confidence 0011111 1100 000 111 34566666663568999999998865332 11223
Q ss_pred cCCCEEEEEeeCCcc-ccHHHHHHHHhcc--CCceEEEEeCccC
Q 011010 213 VNPDLVIFVMDSSIG-QAAFDQAQAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 213 ~~~d~vllVvDa~~g-~~~~~~~~~f~~~--~~~~~vIlTK~D~ 253 (495)
..+|.+++|+++... ......+..+... .+..++|+|+++.
T Consensus 152 ~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 152 KAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred HHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 378999999998632 1111211112221 2446899999984
No 68
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.23 E-value=1.3e-10 Score=113.85 Aligned_cols=146 Identities=17% Similarity=0.092 Sum_probs=86.9
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh---------------hhcCcceeccCC
Q 011010 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------------TKAKIPFYGSYT 164 (495)
Q Consensus 101 ~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a---------------~~~~i~~~~~~~ 164 (495)
+++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.+.....+.... ...++.+.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 4577777 556999999999999999999999999999999876543332110 011222221110
Q ss_pred ----CC------C--hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 165 ----ES------D--PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 165 ----~~------d--p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
.. . ......+.+..+....||+|||||||...... + ...... .+|.+++|+.+.... ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~-~-----~~~~~~-~aD~viiv~~~~~~s~~~~ 170 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP-L-----TVMQDA-KPTGVVVVSTPQELTAVIV 170 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH-H-----HHHHHH-CCSEEEEEECSSSCCHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH-H-----HHHhhc-cCCeEEEEecCccchHHHH
Confidence 00 0 11122333333323689999999998653221 1 011222 679999999876432 22
Q ss_pred HHHHHHHhc-cCCceEEEEeCccC
Q 011010 231 FDQAQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 231 ~~~~~~f~~-~~~~~~vIlTK~D~ 253 (495)
......+.+ ..++.++|+|+.|.
T Consensus 171 ~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 171 EKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp HHHHHHHHTTTCCEEEEEETTCCE
T ss_pred HHHHHHHHhCCCCEEEEEECCCcc
Confidence 223333332 24667899999974
No 69
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.23 E-value=3.2e-11 Score=109.02 Aligned_cols=155 Identities=17% Similarity=0.075 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.|+ |.+.. ++. .+..+........ ..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~------~~~~~-~~~-----------~~~~t~~~~~~~~------------------~~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT------GENVY-IGN-----------WPGVTVEKKEGEF------------------EY 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CCSSS-CC----------------CCCCCEEEE------------------EE
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCee-ccC-----------CCCcceeeeEEEE------------------EE
Confidence 469999999999999999998 54321 010 1111111100000 01
Q ss_pred cCCcEEEEeCCCCCcchH-HHHHHHH-HHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCcc-
Q 011010 182 ENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~-~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g- 258 (495)
.+..+.++||||...... ...+.+. ...... .+|.+++|+|++...........+.+...+..+|.||+|......
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE-KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH-CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcC-CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccCh
Confidence 245789999999753211 1111221 122223 789999999997643322223333332234689999999732110
Q ss_pred --chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 259 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 259 --~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
....... .+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 127 ~~~~~~~~~----------------~~~--~~~~~~SA~~~~~-v~~l~~~l~~~~ 163 (165)
T 2wji_A 127 EIDVDKLEK----------------ILG--VKVVPLSAAKKMG-IEELKKAISIAV 163 (165)
T ss_dssp CCCHHHHHH----------------HHT--SCEEECBGGGTBS-HHHHHHHHHHHT
T ss_pred hhHHHHHHH----------------HhC--CCEEEEEcCCCCC-HHHHHHHHHHHh
Confidence 0111111 111 2446789999999 999999987765
No 70
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.22 E-value=9.9e-11 Score=111.70 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
....|+|+|.+||||||+++.|. +.+.. ++. ...+++. +.+.. ..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~~-----------~~~~t~~-~~~~~-~~--------------- 72 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQS-----------YSFTTKN-LYVGH-FD--------------- 72 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EEC-----------C-----C-EEEEE-EE---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC-----------CCCccee-eeeee-ee---------------
Confidence 34679999999999999999998 66654 222 1112211 11100 00
Q ss_pred hhcCCcEEEEeCCCCCcc-----hHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-----HHHHHHHHhcc--CCceEEE
Q 011010 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-----AFDQAQAFKQS--VSVGAVI 247 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~-----~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-----~~~~~~~f~~~--~~~~~vI 247 (495)
..++.+.|+||||.... .......+ ......+|.+++|+|++.... .......+... ..+..+|
T Consensus 73 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv 148 (228)
T 2qu8_A 73 -HKLNKYQIIDTPGLLDRAFENRNTIEMTTI---TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIG 148 (228)
T ss_dssp -ETTEEEEEEECTTTTTSCGGGCCHHHHHHH---HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEE
T ss_pred -cCCCeEEEEECCCCcCcccchhhhHHHHHH---HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEE
Confidence 12467899999998421 11111112 222347799999999975321 12233444332 2346999
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 248 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 248 lTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+||+|.............. .+.+ .....+.+...+|+..|.| ++.|++.+.+.+
T Consensus 149 ~nK~Dl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 203 (228)
T 2qu8_A 149 FNKIDKCNMDSLSIDNKLL----------IKQILDNVKNPIKFSSFSTLTGVG-VEQAKITACELL 203 (228)
T ss_dssp EECGGGCC--CCCHHHHHH----------HHHHHHHCCSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred EeCcccCCchhhHHHHHHH----------HHHHHHhcCCCceEEEEecccCCC-HHHHHHHHHHHH
Confidence 9999985432111100000 0001 0111123456789999999 999999998876
No 71
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.21 E-value=1.9e-10 Score=112.50 Aligned_cols=145 Identities=19% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCCCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh------------------------
Q 011010 98 KGKPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------------------------ 152 (495)
Q Consensus 98 ~~~~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a------------------------ 152 (495)
..++++|+|+ +..|+||||++..||.+|+ +|++|++|++|++.+....-.....
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 102 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDST 102 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGG
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHh
Confidence 3456788887 5559999999999999999 9999999999997643321111000
Q ss_pred ---hhcCcceeccCCC-----CC----hHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEE
Q 011010 153 ---TKAKIPFYGSYTE-----SD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIF 220 (495)
Q Consensus 153 ---~~~~i~~~~~~~~-----~d----p~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vll 220 (495)
...++.+...... .. ......+.+..+ ...||+||||||+..... ...++..+|.+++
T Consensus 103 i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~yD~viiD~pp~~~~~---------~~~~l~~aD~viv 172 (267)
T 3k9g_A 103 IINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTL-YYKYDYIVIDTNPSLDVT---------LKNALLCSDYVII 172 (267)
T ss_dssp CEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTT-CTTCSEEEEEECSSCSHH---------HHHHHTTCSEEEE
T ss_pred hccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHh-hcCCCEEEEECcCCccHH---------HHHHHHHCCeEEE
Confidence 0022222221110 00 122344455544 358999999999865321 1223336899999
Q ss_pred EeeCCccc-c-HHHHHHHHhc---cCCceEEEEeCccCC
Q 011010 221 VMDSSIGQ-A-AFDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 221 VvDa~~g~-~-~~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
|+.+.... . .......+.. ..++ ++|+|+++..
T Consensus 173 v~~~~~~s~~~~~~~~~~l~~~~~~~~~-~vv~N~~~~~ 210 (267)
T 3k9g_A 173 PMTAEKWAVESLDLFNFFVRKLNLFLPI-FLIITRFKKN 210 (267)
T ss_dssp EEESCTTHHHHHHHHHHHHHTTTCCCCE-EEEEEEECTT
T ss_pred EeCCChHHHHHHHHHHHHHHHHhccCCE-EEEEecccCc
Confidence 99986421 1 1222233322 2344 6999999543
No 72
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.21 E-value=1.4e-11 Score=116.88 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccC----CCCChHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY----TESDPVRIAVEGV 176 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~----~~~dp~~ia~~~l 176 (495)
..+|+|+|.+||||||++++|+..+... .+++++..|++.....+.+... +....... ......+ ..+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~----~~~~~~~~~~~~~~l~~~~-~~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKH----GAKVVPLNTGKECHLDAHL-VGHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTT----TCEEEEEECTTCSSCCHHH-HHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhc----CCcEEEecCCceEeccHHH-HHHHH
Confidence 4579999999999999999999887654 7899999998754333333221 22211111 1111111 23334
Q ss_pred HHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH-HHHHHHhccCCceEEEEeCccCCC
Q 011010 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 177 ~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~-~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
..+...++|++++||+|....... .. . ..+.++.|+|+..+.... .....+. .+..+|+||+|...
T Consensus 112 ~~l~~~~~d~~~id~~g~i~~~~s--------~~-~-~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 112 EDLNLDEIDLLFIENVGNLICPAD--------FD-L-GTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLAD 178 (226)
T ss_dssp TTSCGGGCSEEEEECCSCSSGGGG--------CC-C-SCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGHH
T ss_pred HHHhcCCCCEEEEeCCCCccCcch--------hh-h-ccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccCc
Confidence 333345679999999996332111 01 1 456778888864332211 1112222 23589999999753
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+..+.+..+...+|+..|.| +..|++.+.+.+
T Consensus 179 ~~~~~~~~~~------------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 222 (226)
T 2hf9_A 179 AVGADIKKME------------NDAKRINPDAEVVLLSLKTMEG-FDKVLEFIEKSV 222 (226)
T ss_dssp HHTCCHHHHH------------HHHHHHCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHH------------HHHHHhCCCCeEEEEEecCCCC-HHHHHHHHHHHH
Confidence 2111111111 1111122234556789999999 999999887654
No 73
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.21 E-value=5.6e-11 Score=118.15 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=85.1
Q ss_pred eEEEEEc---CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHh-hhh-----------------------h
Q 011010 102 SVIMFVG---LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ-NAT-----------------------K 154 (495)
Q Consensus 102 ~vI~ivG---~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~-~a~-----------------------~ 154 (495)
++|+|++ ..|+||||++.+||.+|+++|++|++|++|++.+.+. .+.. ... .
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~-~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 113 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTK-DLAKTFKVELPRVNFYEGLKNGNLASSIVHLT 113 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHH-HHTTTSCCCCCSSCHHHHHHHTCCGGGCEESS
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHhccCCCCcccHHHHHhcCChhhhhcccC
Confidence 3577776 7899999999999999999999999999999875331 1110 000 0
Q ss_pred cCcceeccCCCCC-h------------HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEE
Q 011010 155 AKIPFYGSYTESD-P------------VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFV 221 (495)
Q Consensus 155 ~~i~~~~~~~~~d-p------------~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllV 221 (495)
.++.+.+...... . .....+.+..+ ...||+||||||+...... . .++..+|.+++|
T Consensus 114 ~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l-~~~yD~IiiD~pp~~~~~~--~-------~~l~~aD~viiv 183 (298)
T 2oze_A 114 DNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPL-KSDYDLIIIDTVPTPSVYT--N-------NAIVASDYVMIP 183 (298)
T ss_dssp SSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGG-GGGCSEEEEEECSSCSHHH--H-------HHHHHCSEEEEE
T ss_pred CCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHH-hcCCCEEEEECCCCccHHH--H-------HHHHHCCeEEEE
Confidence 1222322111000 0 11133334433 3579999999998754321 1 111147999999
Q ss_pred eeCCccc--cH---HHHHHH----HhccCCceEEEEeCccCCC
Q 011010 222 MDSSIGQ--AA---FDQAQA----FKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 222 vDa~~g~--~~---~~~~~~----f~~~~~~~~vIlTK~D~~~ 255 (495)
+.+.... .. .+.+.. ++..+++.++|+|++|...
T Consensus 184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 9986421 11 122222 2234566799999998754
No 74
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.21 E-value=3.3e-11 Score=134.19 Aligned_cols=84 Identities=8% Similarity=-0.063 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCcChHHHHHHHHHHH-HhhchhhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC
Q 011010 32 LNEITRALLQADVQFKLVREMQTNIK-KIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ 110 (495)
Q Consensus 32 l~ei~~~Lle~dv~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~ 110 (495)
+.+||..|+++-..++...+|.+... .......+ ...+..+...+..+.. .+..|+|+|.+
T Consensus 17 ~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l-------~~~l~~L~~~~~~l~~-----------~~~~V~VvG~~ 78 (695)
T 2j69_A 17 VAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSL-------ERDIEDITIASKNLQQ-----------GVFRLLVLGDM 78 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCC-------HHHHHHHHHHHHHHHH-----------CCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHH-------HHHHHHHHHHHHHhcc-----------CCCEEEEECCC
Confidence 45678888877777777777766421 11111111 2223455555555422 23469999999
Q ss_pred CCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 111 GSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 111 GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
||||||++|.|. |.+++.++.++
T Consensus 79 naGKSSLlNaLl------g~~~~~v~~~p 101 (695)
T 2j69_A 79 KRGKSTFLNALI------GENLLPSDVNP 101 (695)
T ss_dssp TSCHHHHHHHHH------TSSCSCCCCCT
T ss_pred CCCHHHHHHHHh------CCCCCCCCCCC
Confidence 999999999999 88887776643
No 75
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.19 E-value=5.1e-11 Score=116.09 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
....|+|+|.+||||||++|.|. |.++.+.+..+ ..+|+........
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~~----------~~~T~~~~~~~~~----------------- 66 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL------GQRRFFSRLGA----------TSVTRACTTGSRR----------------- 66 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH------TSCCC-------------------CCSCEEEEEE-----------------
T ss_pred CceEEEEECCCCCcHHHHHHHHh------CCCCccccCCC----------CCccccEEEEEEE-----------------
Confidence 34679999999999999999999 87776554310 0122221111110
Q ss_pred hhcCCcEEEEeCCCCCcchHHH----HHHHHH-HHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhcc------CCceEEE
Q 011010 180 KKENCDLIIVDTSGRHKQEAAL----FEEMRQ-VSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQS------VSVGAVI 247 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l----~~el~~-i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~~------~~~~~vI 247 (495)
..+..++|+||||........ ..++.+ +......+|.+++|+|++.-. ........+.+. ..+..++
T Consensus 67 -~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 67 -WDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp -ETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred -ECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 125689999999986544333 122211 122235999999999987421 122222222221 2345888
Q ss_pred EeCccCCC
Q 011010 248 VTKMDGHA 255 (495)
Q Consensus 248 lTK~D~~~ 255 (495)
.||+|...
T Consensus 146 ~nK~Dl~~ 153 (247)
T 3lxw_A 146 TRKEDLAG 153 (247)
T ss_dssp ECGGGGTT
T ss_pred EchHhcCC
Confidence 99999853
No 76
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.18 E-value=7e-11 Score=117.04 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=90.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.|||||||++|.|+ |.+.. ++. .+.++..... +...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~~-----------~pg~tv~~~~--~~~~---------------- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VGN-----------WPGVTVERKS--GLVK---------------- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-CCS-----------SSCCCCSCEE--EECT----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC-----------CCCCcEEEEE--EEEe----------------
Confidence 3579999999999999999999 65421 111 1111111110 0000
Q ss_pred hcCCcEEEEeCCCCCcchH-HHHHHHH-HHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 181 KENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~-~l~~el~-~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
. ++.+.|+||||...... ...+.+. ..... ..+|.+++|+|++...........+.+...+..+|+||+|.....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTT
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCC
Confidence 1 46789999999754321 1112221 12222 2799999999998643333333333332234689999999743211
Q ss_pred chhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 259 GALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 259 ~~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... +.+. .+ -.|...+|+..|.| ++.|++.+.+.+.
T Consensus 125 ~~~~~--------------~~l~~~l--g~~vi~~SA~~g~g-i~el~~~i~~~~~ 163 (272)
T 3b1v_A 125 KKINV--------------DKLSYHL--GVPVVATSALKQTG-VDQVVKKAAHTTT 163 (272)
T ss_dssp CCCCH--------------HHHHHHH--TSCEEECBTTTTBS-HHHHHHHHHHSCT
T ss_pred cHHHH--------------HHHHHHc--CCCEEEEEccCCCC-HHHHHHHHHHHHh
Confidence 10000 1110 11 12556789999999 9999999988764
No 77
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.17 E-value=7.9e-11 Score=114.88 Aligned_cols=144 Identities=21% Similarity=0.217 Sum_probs=84.7
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh---------h---------hcCccee
Q 011010 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------T---------KAKIPFY 160 (495)
Q Consensus 100 ~~~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a---------~---------~~~i~~~ 160 (495)
..++|+|+ +..|+||||++.+||.+|+++|++|++|++|++.. ....+.... . ..++.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN-ATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC-HHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 34688888 56699999999999999999999999999999643 222221000 0 1223333
Q ss_pred ccCCCCChHHHHH------HHHHHHhh-cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-c---
Q 011010 161 GSYTESDPVRIAV------EGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-A--- 229 (495)
Q Consensus 161 ~~~~~~dp~~ia~------~~l~~~~~-~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~--- 229 (495)
+.. ..+...-. ..+..+.. ..||+||||||+...... ..++..+|.+++|+++.... .
T Consensus 84 p~~--~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~~---------~~~l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 84 PAT--PDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPLT---------LNALAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp CCC--TTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHHH---------HHHHHHCSEEEEEEESSTHHHHHHH
T ss_pred eCC--hhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHHH---------HHHHHHCCeEEEEecCchHHHHHHH
Confidence 221 12111100 22222211 689999999998753211 11112579999999987421 1
Q ss_pred -HHHHHHHHh----ccCCceEEEEeCccCCC
Q 011010 230 -AFDQAQAFK----QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 230 -~~~~~~~f~----~~~~~~~vIlTK~D~~~ 255 (495)
..+.+..+. ...++.++|+|++|...
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 112222222 23445689999998654
No 78
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.17 E-value=4.6e-10 Score=103.07 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +.....+.+ ....+...+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~~-----------t~g~~~~~~~---------------------- 56 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLA------SEDISHITP-----------TQGFNIKSVQ---------------------- 56 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC------CSCCEEEEE-----------ETTEEEEEEE----------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCcccC-----------cCCeEEEEEE----------------------
Confidence 4679999999999999999998 655443332 1110000010
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.++||||....... .......+|.+++|+|++....... ....+.. ...+..+|.||+|.
T Consensus 57 ~~~~~l~i~Dt~G~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 57 SQGFKLNVWDIGGQRKIRPY-------WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp ETTEEEEEEECSSCGGGHHH-------HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred ECCEEEEEEECCCCHHHHHH-------HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 12567899999997543211 1233348999999999986433222 2222211 12346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+ ...+. ...+...+|+..|.| ++.+++++.+.+.
T Consensus 130 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAAP-ASEIAEGLN-----------LHTIRDRVWQIQSCSALTGEG-VQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTC-
T ss_pred ccCCC-HHHHHHHhC-----------chhccCCceEEEEccCCCCCC-HHHHHHHHHHHHH
Confidence 64321 111111111 11011 112346689999999 9999999988774
No 79
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.17 E-value=1.6e-10 Score=105.80 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|.+||||||+++.|. +.+..-... .. +..+....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~-----------t~-----~~~~~~~~---------------- 61 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTSP-----------TI-----GSNVEEIV---------------- 61 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEEC-----------CS-----SSSCEEEE----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHh------cCCCCccCC-----------cC-----ceeeEEEE----------------
Confidence 45679999999999999999999 655422222 00 11000000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D 252 (495)
..++.+.|+||||....... ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~D 133 (181)
T 2h17_A 62 -INNTRFLMWDIGGQESLRSS-------WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133 (181)
T ss_dssp -ETTEEEEEEEESSSGGGTCG-------GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred -ECCEEEEEEECCCCHhHHHH-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCC
Confidence 12578899999997432211 1233458899999999986533222 2222221 2234689999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccc-cCccchhhhccCCCCcHHHHHHHHHh
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
...... .-.+.... ....+.. ..+...+|+..|.| ++.+++++.+.
T Consensus 134 l~~~~~-~~~i~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 180 (181)
T 2h17_A 134 VKECMT-VAEISQFL-----------KLTSIKDHQWHIQACCALTGEG-LCQGLEWMMSR 180 (181)
T ss_dssp STTCCC-HHHHHHHT-----------TGGGCCSSCEEEEECBTTTTBT-HHHHHHHHHTC
T ss_pred cccCCC-HHHHHHHh-----------CcccccCCceEEEEccCCCCcC-HHHHHHHHHhh
Confidence 854311 11111110 0111111 11456789999999 99999988653
No 80
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.16 E-value=3.5e-10 Score=110.50 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHH------------HHHhh-----------hhhcCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------------QLKQN-----------ATKAKIP 158 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~d------------qL~~~-----------a~~~~i~ 158 (495)
++|+|.|..|+||||++.+||.+|+++|++|++|++|++.+.... .+... ....++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 468888999999999999999999999999999999987654321 12111 0112333
Q ss_pred eeccCCCC-Ch----HHH--HHHHHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-
Q 011010 159 FYGSYTES-DP----VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ- 228 (495)
Q Consensus 159 ~~~~~~~~-dp----~~i--a~~~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~- 228 (495)
+....... +. ... ....+..+. .+.||+|||||||....+. +... + .. ..+|.+++|+++....
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~---~-~~-~~aD~viiv~~~~~~s~ 155 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMP---I-RE-GKAQEIYIVASGEMMAL 155 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHH---H-HT-TSCCEEEEEECSSHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhh---h-hH-hhCCEEEEeecCchhhH
Confidence 33221111 00 111 011112221 3479999999998653321 1100 1 11 2689999999986321
Q ss_pred -cH---HHHHHHHhc--cCCceEEEEeCccC
Q 011010 229 -AA---FDQAQAFKQ--SVSVGAVIVTKMDG 253 (495)
Q Consensus 229 -~~---~~~~~~f~~--~~~~~~vIlTK~D~ 253 (495)
.. .+.+..+.. ..++.++|+|+.+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 156 YAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp HHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 11 122223322 23456899999974
No 81
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.15 E-value=3.5e-11 Score=126.45 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
....|+|+|.+|+||||+++.|. +.+.+.++. .+.++...........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~------~~~~~~~~~-----------~~gtT~d~~~~~~~~~--------------- 80 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSD-----------YAGTTTDPVYKSMELH--------------- 80 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSC------C------------------------CCCCEEEEEET---------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHH------cCCCCccCC-----------CCCeeeeeEEEEEEEC---------------
Confidence 34679999999999999999998 766655543 2223322111111011
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCccc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~ 259 (495)
....+.|+||||..........+.......+..+|.+++|+|+............+.+...+..+|+||+|.......
T Consensus 81 --~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 81 --PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp --TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT
T ss_pred --CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH
Confidence 122789999999753221100112233445558999999999943333333444444433346999999998654321
Q ss_pred hhHHHHhcCCCeEEeccCCCcc-cccccCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~-~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
.... .+. .+. .+...+|+..|.| ++.|++.+.+.+++.
T Consensus 159 --~~~~-------------~l~~~~g--~~v~~vSAktg~g-I~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 159 --ELKG-------------LYESRYE--AKVLLVSALQKKG-FDDIGKTISEILPGD 197 (423)
T ss_dssp --HHHH-------------HSSCCTT--CCCCCCSSCCTTS-TTTHHHHHHHHSCCC
T ss_pred --HHHH-------------HHHHHcC--CCEEEEECCCCCC-HHHHHHHHHHhhhhh
Confidence 1111 111 111 2557799999999 999999999998543
No 82
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.15 E-value=4.5e-10 Score=106.52 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=81.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+|+|+ +..|+||||++.+||.+|+++| +|++|++|++.... ..+.. . .+|+.... . ..++.+ .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~-~---~l~~~vi~-----~----~~l~~l-~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR-G---SLPFKVVD-----E----RQAAKY-A 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH-S---CCSSEEEE-----G----GGHHHH-G
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC-C---CCCcceeC-----H----HHHHHh-h
Confidence 56776 6669999999999999999999 99999999986432 22322 1 12221100 0 033444 3
Q ss_pred cCCcEEEEeCCCC-CcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhc--cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGR-HKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQ--SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~-~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~--~~~~~~vIlTK~D~~~ 255 (495)
..||+|||||||. .... ...++..+|.+++|+++.... ........+.+ ..+ .++|+|++|...
T Consensus 66 ~~yD~viiD~p~~~~~~~---------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED---------LEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSSH---------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcHH---------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 5799999999887 4332 112223789999999987421 22223333333 234 589999999764
No 83
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.14 E-value=2.6e-10 Score=104.46 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|++||||||+++.|+ +.+.. ++. .+..+.... .....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~~-----------~~~~t~~~~--~~~~~---------------- 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT------GENVY-IGN-----------WPGVTVEKK--EGEFE---------------- 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TTCEE-EEE-----------CTTSCCEEE--EEEEE----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcc-ccC-----------CCCeeccce--EEEEE----------------
Confidence 4579999999999999999999 65432 221 111111000 00000
Q ss_pred hcCCcEEEEeCCCCCcchH-HHHHHH-HHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 181 KENCDLIIVDTSGRHKQEA-ALFEEM-RQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~-~l~~el-~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
..++.+.|+||||...... ...+.+ ....... .+|.+++|+|++...........+.....+..+|.||+|......
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE-KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH-CCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHHhcc-CCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccccc
Confidence 1256789999999754321 011112 1122222 689999999987533332233333333334589999999742211
Q ss_pred ---chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCCC
Q 011010 259 ---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 315 (495)
Q Consensus 259 ---~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~~ 315 (495)
.........+ .+...+|+..|.| ++.|++.+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IEIDVDKLEKILG------------------VKVVPLSAAKKMG-IEELKKAISIAVKDK 170 (188)
T ss_dssp CCCCHHHHHHHHT------------------SCEEECBGGGTBS-HHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhC------------------CCeEEEEecCCCC-HHHHHHHHHHHHHhc
Confidence 1111111111 2446789999999 999999998877543
No 84
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=104.83 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+...+.. . .+..++..... ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~------~~~~~~~~~-----------~-----~~~~~~~~~~~-------------~~ 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA------GKQERDLHE-----------Q-----LGEDVYERTLT-------------VD 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CC-----CC-----------C-----SSSSEEEEEEE-------------ET
T ss_pred EEEEEEECCCCccHHHHHHHHh------cCCCccccC-----------c-----cccceeEEEEE-------------EC
Confidence 3469999999999999999998 654432221 0 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc----CCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS----VSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~----~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... ..+ .......+|.+++|+|.+...... .....+... ..+..+|+||+|.
T Consensus 49 ~~~~~~~~~D~~g~~~~~~---~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl 123 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDK---SWS--QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123 (175)
T ss_dssp TEEEEEEEECCC----------CHH--HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTC
T ss_pred CEEEEEEEEecCCCCccch---hhh--HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhh
Confidence 1245789999999753211 111 112334689999999987533211 112222221 1235899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ .+.. ....+...+|+..|.| ++.|++++.+.+
T Consensus 124 ~~~~~v~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 167 (175)
T 2nzj_A 124 ARCREVSVEEGR-------------ACAV-VFDCKFIETSATLQHN-VAELFEGVVRQL 167 (175)
T ss_dssp TTTCCSCHHHHH-------------HHHH-HHTSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccCHHHHH-------------HHHH-HcCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 543211111100 0000 0112456789999999 999999987765
No 85
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.14 E-value=4.5e-10 Score=111.29 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHH------------HHHhh-------------hhhcC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------------QLKQN-------------ATKAK 156 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~d------------qL~~~-------------a~~~~ 156 (495)
++|+|.|..|+||||++.+||.+|+++|++|++|++|++.+.... .+... ....+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 578889999999999999999999999999999999997654321 12110 00112
Q ss_pred cceeccCCCC-C---h-HHH--HHHHHHHHh--hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc
Q 011010 157 IPFYGSYTES-D---P-VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG 227 (495)
Q Consensus 157 i~~~~~~~~~-d---p-~~i--a~~~l~~~~--~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g 227 (495)
+.+....... . . ... ....+..+. ...||+|||||||....+. +.. .. ....+|.+++|+.+...
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~----~~-~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAM----PI-RENKAQEIYIVCSGEMM 156 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTH----HH-HTTCCCEEEEEECSSHH
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhh----hh-hhhhCCEEEEEecCCHH
Confidence 2222211110 0 0 011 111222221 3479999999998653321 110 00 11268999999998632
Q ss_pred c--cH---HHHHHHHhc--cCCceEEEEeCccC
Q 011010 228 Q--AA---FDQAQAFKQ--SVSVGAVIVTKMDG 253 (495)
Q Consensus 228 ~--~~---~~~~~~f~~--~~~~~~vIlTK~D~ 253 (495)
. .. .+.+..+.. ..++.++|+|+.+.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 1 11 122233322 23456899999864
No 86
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.13 E-value=4e-11 Score=108.54 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=88.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.+||||||+++.|. +.+.. . .+.+ ..+. .+..+. ..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~------~~~~~---~-~~~~--------~~~~-~~~~~~-----------------~~ 51 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR------HSKVT---E-QEAG--------GITQ-HIGAYQ-----------------VT 51 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH------TTCSS---C-SSCC--------SSST-TCCCCE-----------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCccc---c-CCCC--------ceeE-eeeEEE-----------------EE
Confidence 4579999999999999999998 43321 0 0000 0000 000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHhccCCceEEEEeCccCCCCcc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 258 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~~~~~~~~vIlTK~D~~~~~g 258 (495)
..+..+.|+||||....... ....+..+|.+++|+|++.+. ...+.+..+.....+..+|+||+|......
T Consensus 52 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 52 VNDKKITFLDTPGHEAFTTM-------RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp ETTEEEEESCCCSSSSSSCS-------CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred eCCceEEEEECCCCHHHHHH-------HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 12567889999996432210 112234789999999987532 233334444333334699999999864321
Q ss_pred -chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.........+ .....+....+...+|+..|.| ++.|++++.+.+
T Consensus 125 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 169 (178)
T 2lkc_A 125 DRVMQELMEYN---------LVPEEWGGDTIFCKLSAKTKEG-LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHTTTT---------CCBTTTTSSEEEEECCSSSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------cChhHcCCcccEEEEecCCCCC-HHHHHHHHHHhh
Confidence 1111111000 0001111113556799999999 999999987765
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=5.1e-10 Score=102.79 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++++|. +.+..-... + .+.......
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~~~~---------------t-~~~~~~~~~----------------- 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS------MNEVVHTSP---------------T-IGSNVEEIV----------------- 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TTSCEEEEC---------------C-SCSSCEEEE-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCcCcC---------------C-CccceEEEE-----------------
Confidence 4579999999999999999998 544331111 0 000000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|.
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRSS-------WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp ETTEEEEEEECCC----CGG-------GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred ECCEEEEEEECCCCHhHHHH-------HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 12578899999997432211 112334889999999998653222 22222222 12346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+ ...+. ...+...+|+..|.| ++.+++++.+.+.
T Consensus 130 ~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (187)
T 1zj6_A 130 KECMT-VAEISQFLK-----------LTSIKDHQWHIQACCALTGEG-LCQGLEWMMSRLK 177 (187)
T ss_dssp TTCCC-HHHHHHHHT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred cCCCC-HHHHHHHhC-----------hhhhcCCCcEEEEccCCCCcC-HHHHHHHHHHHHH
Confidence 64311 111111000 00011 112456789999999 9999999988764
No 88
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.13 E-value=1.1e-10 Score=104.66 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.|. +........ ...+ ..++..... ....
T Consensus 4 ki~ivG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~----~~~~~~~~~-------------~~~~ 49 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG------GLQGDHAHE-----------MENS----EDTYERRIM-------------VDKE 49 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH------CC---------------------------CEEEEEEE-------------ETTE
T ss_pred EEEEECCCCCCHHHHHHHHH------hccCccccc-----------CCCc----CCeeeEEEE-------------ECCe
Confidence 58999999999999999998 432221111 0000 000000000 0012
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhcc----CCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQS----VSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~~----~~~~~vIlTK~D~~~ 255 (495)
.+.+.++||||.......+.. .....+|.+++|+|++.... .......+... -.+..+|.||+|...
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEECCCCC--------C------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred EEEEEEEECCCccccchhhhh------hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 467889999997533211111 11225799999999985332 11222222221 224589999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... +.+ ..+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~i 165 (169)
T 3q85_A 124 SREVSLEEG-------------RHLAGTL--SCKHIETSAALHHN-TRELFEGAVRQI 165 (169)
T ss_dssp GCCSCHHHH-------------HHHHHHT--TCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHH-------------HHHHHHc--CCcEEEecCccCCC-HHHHHHHHHHHH
Confidence 211111111 001 011 12446789999999 999999887654
No 89
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.12 E-value=8.1e-11 Score=104.78 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.|. +.+. ...+.+ ++ +..+..... ...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~--------------~~~ 49 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------TK--ADSYRKKVV--------------LDG 49 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSCC----CSCCCT---------TC--CEEEEEEEE--------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHH------hCcc----CCCCCC---------Cc--ceEEEEEEE--------------ECC
Confidence 469999999999999999998 3331 111111 00 011100000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HH---HHHHhc-cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQ---AQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~---~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||...... +. . .....+|.+++|+|++...... .. ...... ...+..+|+||+|..
T Consensus 50 ~~~~~~l~D~~G~~~~~~-~~---~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAA-IR---D---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHH-HH---H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHH-HH---H---HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 246789999999643221 11 1 2223679999999998543211 11 111211 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +..... ..+...+|+..|.| ++.+++++.+.+
T Consensus 123 ~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (168)
T 1u8z_A 123 DKRQVSVEEAK------------NRADQW--NVNYVETSAKTRAN-VDKVFFDLMREI 165 (168)
T ss_dssp GGCCSCHHHHH------------HHHHHH--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCccCHHHHH------------HHHHHc--CCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 32111111110 000111 12446789999999 999999887654
No 90
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.12 E-value=9.6e-11 Score=104.80 Aligned_cols=152 Identities=10% Similarity=0.027 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||++++|. +.+...+.. ...++... . .. .. ..
T Consensus 4 ki~~vG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~~-~-~~-~~----------------~~ 47 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG------GVEDGPEAE-----------AAGHTYDR-S-IV-VD----------------GE 47 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC------CC---------------------CEEEE-E-EE-ET----------------TE
T ss_pred EEEEECCCCCCHHHHHHHHc------CccccCCCC-----------ccccceEE-E-EE-EC----------------CE
Confidence 59999999999999999998 655443332 11111110 0 01 01 13
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc----CCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS----VSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~----~~~~~vIlTK~D~~~ 255 (495)
.+.+.++||||...... + .......+|.+++|+|.+....... ....+... -.+..+|.||+|...
T Consensus 48 ~~~~~i~D~~g~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRW-----L--PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEECC----------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEECCCCccchh-----h--hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 56789999999643221 1 1122237899999999985432111 12222211 124589999999864
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... .... ....+...+|+..|.| ++.+++++.+.+
T Consensus 121 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVSVDEGR-------------ACAV-VFDCKFIETSAALHHN-VQALFEGVVRQI 162 (166)
T ss_dssp SCCSCHHHHH-------------HHHH-HTTCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHH-HhCCcEEEeccCCCCC-HHHHHHHHHHHH
Confidence 3211111110 0000 0112456789999999 999999987654
No 91
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.12 E-value=9.7e-11 Score=104.54 Aligned_cols=154 Identities=11% Similarity=0.040 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.|. +.+. .+.+.+ +............ .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~------~~~~----~~~~~~---------t~~~~~~~~~~~~----------------~ 48 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV------QGIF----VEKYDP---------TIEDSYRKQVEVD----------------C 48 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HCCC----CCSCCC---------CSEEEEEEEEESS----------------S
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCC----CCCCCC---------CccceEEEEEEEC----------------C
Confidence 469999999999999999998 2211 011111 0000000000001 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||........ . .....+|.+++|+|++.... .......+.. ...+..+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~----~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMR----D---LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHH----H---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHH----H---HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 24678999999975433211 1 11225799999999875421 1122222221 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+ ..+ ...+...+|+..|.| ++.|++++.+.+
T Consensus 122 ~~~~~~~~~~-------------~~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (167)
T 1c1y_A 122 DERVVGKEQG-------------QNLARQW-CNCAFLESSAKSKIN-VNEIFYDLVRQI 165 (167)
T ss_dssp GGCCSCHHHH-------------HHHHHHT-TSCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCCHHHH-------------HHHHHHc-cCCcEEEecCCCCCC-HHHHHHHHHHHH
Confidence 3211111111 001 011 123456789999999 999999987654
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.12 E-value=3.1e-10 Score=104.58 Aligned_cols=155 Identities=13% Similarity=0.030 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. +.+.+ ..+..+... .
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~-----------------~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA------SGQFN----EDMIP-----------TVGFNMRKI-----------------T 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----CSCCC-----------CCSEEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHH------cCCCC----CccCC-----------CCceeEEEE-----------------E
Confidence 4579999999999999999998 32211 01111 011111110 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.|+||||..... . + ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|.
T Consensus 64 ~~~~~~~l~Dt~G~~~~~----~-~--~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFR----S-M--WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp ETTEEEEEEEECCSHHHH----T-T--HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred eCCEEEEEEECCCCHhHH----H-H--HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 136788999999963211 1 1 1233348899999999975433222 2222221 12235899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+ ...+ ....+...+|+..|.| ++.|++++.+.+.
T Consensus 137 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 184 (188)
T 1zd9_A 137 PGALD-EKELIEKMN-----------LSAIQDREICCYSISCKEKDN-IDITLQWLIQHSK 184 (188)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTCC
T ss_pred ccCCC-HHHHHHHhC-----------hhhhccCCeeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 64321 111111111 0001 1112446789999999 9999999988874
No 93
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.11 E-value=1e-10 Score=109.34 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|++||||||++++|. +.+...... ....+...+ .
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~------~~~~~~~~~-----------t~~~~~~~~----------------------~ 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK------DDRLGQHVP-----------TLHPTSEEL----------------------T 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS------CC------C-----------CCCCSCEEE----------------------E
T ss_pred CcEEEEECCCCCCHHHHHHHHh------cCCCCccCC-----------CCCceeEEE----------------------E
Confidence 4569999999999999999998 544321111 000000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++++.++||||...... + .......+|.+++|+|++....... ....+.. ...+..+|.||+|.
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 66 IAGMTFTTFDLGGHIQARR-----V--WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp ETTEEEEEEEECC----CC-----G--GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred ECCEEEEEEECCCcHhhHH-----H--HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 1257889999999632211 1 1123347899999999986543222 2222221 12345899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCccccc----ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE----VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~----~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ..-......+..- +..++....+. ...+...+|++.|.| ++.+++++.+.+
T Consensus 139 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~l 197 (198)
T 1f6b_A 139 PEAI-SEERLREMFGLYG--QTTGKGSVSLKELNARPLEVFMCSVLKRQG-YGEGFRWMAQYI 197 (198)
T ss_dssp TTCC-CHHHHHHHHTCTT--TCCCSSCCCTTTCCSCCEEEEECBTTTTBS-HHHHHHHHHTTC
T ss_pred cccC-CHHHHHHHhCccc--ccccccccccccccCceEEEEEEECCCCCC-HHHHHHHHHHhc
Confidence 5421 1111111111110 11111111111 123456799999999 999999987654
No 94
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=107.49 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||+++.|. +.+...... + ..+..+...... ...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~~ 72 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFT------DDTFCEACK----S-----------TVGVDFKIKTVE-------------LRG 72 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHC------C------------C-----------CTTEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCcCCC----C-----------ccceeEEEEEEE-------------ECC
Confidence 469999999999999999998 433221100 0 011111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|...
T Consensus 73 ~~~~l~l~Dt~G~~~~~~-~------~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNS-I------TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEEEECCSGGGHH-H------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred eEEEEEEEeCCCcHHHHH-H------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 246789999999754322 1 1122236799999999986432211 1122221 1234689999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... +.+.......+...+|+..|.| ++.+++.+.+.+
T Consensus 146 ~~~v~~~~~-------------~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 188 (192)
T 2il1_A 146 DREITRQQG-------------EKFAQQITGMRFCEASAKDNFN-VDEIFLKLVDDI 188 (192)
T ss_dssp GCCSCHHHH-------------HHHHHTSTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHH-------------HHHHHhcCCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211111111 0110000123446789999999 999999887654
No 95
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.11 E-value=1.6e-10 Score=104.34 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. . .+.+ + .+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~---------t--~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFT------EKKFM---A-DCPH---------T--IGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---S-SCTT---------S--CCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCC---------c--cceEEEEEEEE-------------EC
Confidence 3579999999999999999998 33211 0 0000 0 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|..
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAV-------TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHH-------HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CeEEEEEEEECCCChHhhhh-------HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 12467899999996433221 122333789999999998643211 11111221 223468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +..... ..+...+|+..|.| ++.+++++.+.+
T Consensus 134 ~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 176 (179)
T 1z0f_A 134 AQRDVTYEEAK------------QFAEEN--GLLFLEASAKTGEN-VEDAFLEAAKKI 176 (179)
T ss_dssp GGCCSCHHHHH------------HHHHHT--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHH------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32211111110 000011 12446789999999 999999887654
No 96
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.11 E-value=1.2e-09 Score=110.54 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ 147 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dq 147 (495)
.++++.|.+|+||||++.+||.+++++|++|++|++|+ ++...+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~ 59 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDS 59 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHH
Confidence 46666699999999999999999999999999999999 5544333
No 97
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.10 E-value=2.2e-10 Score=102.80 Aligned_cols=155 Identities=19% Similarity=0.088 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.+||||||+++.|. +.+.. .+.| + .+.......
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~------~~~~~-----~~~~----------t-~~~~~~~~~----------------- 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQ------VGEVV-----TTIP----------T-IGFNVETVT----------------- 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSSCC-----CCCC----------C-SSEEEEEEE-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCC-----CcCC----------c-CccceEEEE-----------------
Confidence 4579999999999999999997 22210 1111 0 011110000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|.
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRPY-------WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp ETTEEEEEEEECCCGGGGGG-------GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred ECCEEEEEEECCCChhhhHH-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 12567899999997532211 123344889999999998653222 22222221 12346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+. +.... ...+...+|+..|.| ++.+++++.+.+.
T Consensus 121 ~~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (171)
T 1upt_A 121 EQAMT-SSEMANSLGL--------PALKD--RKWQIFKTSATKGTG-LDEAMEWLVETLK 168 (171)
T ss_dssp TTCCC-HHHHHHHHTG--------GGCTT--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cCCCC-HHHHHHHhCc--------hhccC--CceEEEECcCCCCcC-HHHHHHHHHHHHh
Confidence 54321 1111111110 00011 111456799999999 9999999887653
No 98
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.10 E-value=1.7e-10 Score=102.21 Aligned_cols=150 Identities=14% Similarity=0.037 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.|+ +.+.. +.+.+ +............ .
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~------~~~~~----~~~~~---------~~~~~~~~~~~~~----------------~ 48 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI------QNHFV----DECDP---------TIEDSYRKQVVID----------------G 48 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSSCC----SCCCT---------TCCEEEEEEEEET----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCcCc----cccCC---------ccceEEEEEEEEC----------------C
Confidence 359999999999999999998 32210 01111 0000000000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HH---HHHHhc-cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQ---AQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~---~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
..+++.|+||||........ ...+..+|.+++|+|++...... .. +..+.. ...+..+|+||+|..
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMR-------DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHH-------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEEEEECCCchhhhHHH-------HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 24678999999975433211 11222679999999987543211 11 122221 123458999999986
Q ss_pred CCccch---hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~---ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+.... .......+ .+...+|+..|.| +..+++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (166)
T 2ce2_X 122 ARTVESRQAQDLARSYG------------------IPYIETSAKTRQG-VEDAFYTLVREI 163 (166)
T ss_dssp CCCSCHHHHHHHHHHHT------------------CCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHcC------------------CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 532111 11111111 1446689999999 999999887654
No 99
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.10 E-value=1.3e-09 Score=108.19 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=72.6
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhh------h---hcCc-ceeccCC--CCCh
Q 011010 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------T---KAKI-PFYGSYT--ESDP 168 (495)
Q Consensus 102 ~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a------~---~~~i-~~~~~~~--~~dp 168 (495)
++|+|+ +..|+||||++..||.+|++.|++|++|++|+..+.....+.... . ..++ ++..... ...+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~ 84 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAER 84 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcCh
Confidence 478887 556999999999999999999999999999996665544443211 0 1122 2222100 0000
Q ss_pred -----HHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 169 -----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 169 -----~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
.....+.+..+. ..||+||||||+..... ...++..+|.+++|+.+.
T Consensus 85 ~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~---------~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 85 PEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAI---------TRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHH---------HHHHHHTCSEEEEEEESS
T ss_pred hhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHH---------HHHHHHHCCEEEEEEcCC
Confidence 112344455543 57999999999875321 122233789999999986
No 100
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.10 E-value=1.9e-10 Score=106.14 Aligned_cols=155 Identities=21% Similarity=0.135 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
....|+|+|.+||||||+++.|. +.+...+...+ + .+..+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~~~------------t--~~~~~~~~~---------------- 59 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHITA------------T--VGYNVETFE---------------- 59 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS------CCC----CCCC------------C--SSEEEEEEE----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------cCCCccccccc------------c--cceeEEEEE----------------
Confidence 35689999999999999999998 65544332111 0 111111100
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc------------cCCce
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ------------SVSVG 244 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~------------~~~~~ 244 (495)
...+.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ..+ .
T Consensus 60 -~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 130 (199)
T 4bas_A 60 -KGRVAFTVFDMGGAKKFRGL-------WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-F 130 (199)
T ss_dssp -ETTEEEEEEEECCSGGGGGG-------GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-E
T ss_pred -eCCEEEEEEECCCCHhHHHH-------HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-E
Confidence 13678999999997533211 113345899999999998654322 12222211 333 5
Q ss_pred EEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCcccc-c-ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 245 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF-E-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 245 ~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+|+||+|...... ...+....+ ...+ . ...+...+|+..|.| ++.+++++.+.+
T Consensus 131 ilv~NK~Dl~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 187 (199)
T 4bas_A 131 LFFANKMDAAGAKT-AAELVEILD-----------LTTLMGDHPFVIFASNGLKGTG-VHEGFSWLQETA 187 (199)
T ss_dssp EEEEECTTSTTCCC-HHHHHHHHT-----------HHHHHTTSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred EEEEECcCCCCCCC-HHHHHHHhc-----------chhhccCCeeEEEEeeCCCccC-HHHHHHHHHHHH
Confidence 89999999864421 111111111 0000 0 112446789999999 999999998765
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.10 E-value=1.3e-10 Score=105.57 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+. .+.+.+ ++ ...+...... .
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~~--------------~ 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------TK--ADSYRKKVVL--------------D 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CCSCCT---------TC--CEEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHh------hCCC----CCcCCC---------cc--ceEEEEEEEE--------------C
Confidence 3579999999999999999998 3331 111111 00 0111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHH---HHHHhc-cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQ---AQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~---~~~f~~-~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... +. ...+..+|.+++|+|++..... ... +..... ...+..+|+||+|.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~-~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAA-IR------DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHH-HH------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHH-HH------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1246789999999754332 11 1122367999999999854321 111 112222 12235899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ +..... ..+...+|+..|.| ++.+++++.+.+
T Consensus 136 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (187)
T 2a9k_A 136 EDKRQVSVEEAK------------NRAEQW--NVNYVETSAKTRAN-VDKVFFDLMREI 179 (187)
T ss_dssp GGGCCSCHHHHH------------HHHHHT--TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCccCHHHHH------------HHHHHc--CCeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 532111111110 000111 12446789999999 999999987765
No 102
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.10 E-value=1.2e-10 Score=105.69 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV------KDQFV---E-FQES-----------TIGAAFFSQTLA-------------VN 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCT---T-TSCC-----------CSCCSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC---C-cCCC-----------CceeEEEEEEEE-------------EC
Confidence 3579999999999999999998 22110 0 0000 011111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+... ..+..+|+||+|..
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHS-L------APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp TEEEEEEEEECCCSGGGGG-G------THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhh-h------hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 1246789999999643221 1 11233478999999999754321 1222222221 23458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
........... .+.. ....+...+|+..|.| ++.+++++.+.+..
T Consensus 131 ~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 131 DARKVTAEDAQ-------------TYAQ-ENGLFFMETSAKTATN-VKEIFYEIARRLPR 175 (181)
T ss_dssp TTCCSCHHHHH-------------HHHH-HTTCEEEECCSSSCTT-HHHHHHHHHHTCC-
T ss_pred ccccCCHHHHH-------------HHHH-HcCCEEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 43211111110 0000 0112446789999999 99999999988753
No 103
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.10 E-value=8.1e-10 Score=98.50 Aligned_cols=152 Identities=20% Similarity=0.107 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.|.. .+. .+ +.| +. +....... ..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~------~~~--~~---~~~----------t~-~~~~~~~~-----------------~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL------GEI--VT---TIP----------TI-GFNVETVE-----------------YK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------HCS--SC---CCC----------CS-SCCEEEEE-----------------CS
T ss_pred EEEEECCCCCCHHHHHHHHHc------CCc--Cc---ccC----------cC-ceeEEEEE-----------------EC
Confidence 489999999999999999983 110 00 111 00 01000000 13
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
++.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|...
T Consensus 43 ~~~~~i~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP-L------WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp SCEEEEEECCCCGGGHH-H------HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEEcCCChhhHH-H------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 67899999999854321 1 1233458999999999986533222 2222222 1234689999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... ...+....+ ...+. ...+...+|+..|.| ++.+++++.+.+.
T Consensus 116 ~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 116 AMN-AAEITDKLG-----------LHSLRHRNWYIQATCATSGDG-LYEGLDWLSNQLR 161 (164)
T ss_dssp CCC-HHHHHHHTT-----------GGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred CCC-HHHHHHHhC-----------cccccCccEEEEEcccCCCcC-HHHHHHHHHHHHh
Confidence 321 111111111 11111 112346789999999 9999999988764
No 104
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.10 E-value=1.8e-10 Score=105.84 Aligned_cols=106 Identities=16% Similarity=0.067 Sum_probs=61.4
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc-CCceEEEEeCccCCCCccc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS-VSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~-~~~~~vIlTK~D~~~~~g~ 259 (495)
+.+.|+||||....... ....+..+|.+++|+|++....... ....+... ..+..+|+||+|...+. .
T Consensus 93 ~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~-~ 164 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ-V 164 (208)
T ss_dssp EEEEEEECTTGGGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC-S
T ss_pred eEEEEEECCCcHHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc-C
Confidence 68999999996432211 1223348899999999986533222 22222221 24569999999932221 1
Q ss_pred hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... +..... ..+...+|+..|.| ++.+++++.+.+
T Consensus 165 ~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 202 (208)
T 3clv_A 165 DILEVQ------------KYAQDN--NLLFIQTSAKTGTN-IKNIFYMLAEEI 202 (208)
T ss_dssp CHHHHH------------HHHHHT--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CHHHHH------------HHHHHc--CCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 111111 000111 12456789999999 999999887654
No 105
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.10 E-value=9.2e-11 Score=106.19 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +.+.. +.+.+ ..+..++......+ .
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~~~------------~ 54 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV------NDKYS----QQYKA-----------TIGADFLTKEVTVD------------G 54 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----TTC--------------CCCSCEEEEECCS------------S
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCcCC----cccCC-----------ccceEEEEEEEEEc------------C
Confidence 4579999999999999999998 32211 01111 00111111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc-------cCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~-------~~~~~~vIlTK 250 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ...+..+|+||
T Consensus 55 ~~~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQS-----L--GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp SCCEEEEEECCC-----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred CcEEEEEEEECCCChHhhh-----h--hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 1246789999999532111 1 12234478999999999864321 111112211 12245899999
Q ss_pred ccCCCCccch-hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 251 MDGHAKGGGA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 251 ~D~~~~~g~~-ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+|........ .... +.+.......+...+|+..|.| ++.+++++.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (182)
T 1ky3_A 128 IDAEESKKIVSEKSA-------------QELAKSLGDIPLFLTSAKNAIN-VDTAFEEIARSA 176 (182)
T ss_dssp TTSCGGGCCSCHHHH-------------HHHHHHTTSCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CccccccccCCHHHH-------------HHHHHhcCCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 9984321111 1101 0111101223456789999999 999999987654
No 106
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.09 E-value=4e-11 Score=108.50 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+...... + ..+..+...... ..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~~~~----~-----------~~~~~~~~~~~~-------------~~ 54 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA------DNTFSGSYI----T-----------TIGVDFKIRTVE-------------IN 54 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC------SCC---CCT----T-----------TBSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCCccC----C-----------CceeEEEEEEEE-------------EC
Confidence 3569999999999999999998 544331111 0 011111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhccC--CceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQSV--SVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~~--~~~~vIlTK~D~~~ 255 (495)
...+.+.|+||||....... ....+..+|.+++|+|++....... ....+.... .+..+|+||+|...
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTI-------TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSC-------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhh-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch
Confidence 12367899999995322110 1123347899999999986433222 222222221 34589999999754
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... .... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (181)
T 3tw8_B 128 RKVVETEDAY-------------KFAG-QMGIQLFETSAKENVN-VEEMFNCITELV 169 (181)
T ss_dssp GCCSCHHHHH-------------HHHH-HHTCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred hcccCHHHHH-------------HHHH-HcCCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211111000 0000 0112446789999999 999999988776
No 107
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3.1e-10 Score=117.37 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
-..|+|||+||||||||+|+|. |.++. |+. .+++|+..++-...+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt------~~~~~-v~~-----------~pftT~~~~~g~~~~----------------- 116 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLT------GTESE-AAE-----------YEFTTLVTVPGVIRY----------------- 116 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHH------SBCCC-GGG-----------TCSSCCCEEEEEEEE-----------------
T ss_pred CCeEEEECCCCCCHHHHHHHHh------CCCCc-ccC-----------CCCceeeeeeEEEEe-----------------
Confidence 3579999999999999999999 76643 344 456666544322211
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHH----HHHhcc--CCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQA----QAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~----~~f~~~--~~~~~vIlTK~D~ 253 (495)
.+..+.|+||||+............++...+..+|.+++|+|++......+.. ..+... -.+..+++||.|.
T Consensus 117 -~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 117 -KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp -TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred -CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 26789999999986543332222345555666899999999998543333322 222111 1234789999985
No 108
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.09 E-value=1.5e-10 Score=103.34 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 51 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFV------KGQFH----EFQES-----------TIGAAFLTQTVC-------------LD 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----TTCCC-----------CSSEEEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ccceEEEEEEEE-------------EC
Confidence 3469999999999999999998 22110 00000 011111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... .......+|.+++|+|++....... ....+... ..+..+|.||+|..
T Consensus 52 ~~~~~~~~~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 52 DTTVKFEIWDTAGQERYHSL-------APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGG-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHHhhhh-------hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 12567899999996432211 1223347899999999985432211 12222221 22357778999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
........... .+.. ....+...+|+..|.| ++.|++++.+.++
T Consensus 125 ~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~i~~~~~ 168 (170)
T 1r2q_A 125 NKRAVDFQEAQ-------------SYAD-DNSLLFMETSAKTSMN-VNEIFMAIAKKLP 168 (170)
T ss_dssp GGCCSCHHHHH-------------HHHH-HTTCEEEECCTTTCTT-HHHHHHHHHHTSC
T ss_pred cccccCHHHHH-------------HHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 32111011110 0000 0112345689999999 9999999988775
No 109
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=9.4e-11 Score=109.56 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. . .+.+ ..+..+...... ..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~ 65 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFV------EDKFN---P-SFIT-----------TIGIDFKIKTVD-------------IN 65 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HCCCC---C-SSSC-----------CCSCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC---c-ccCC-----------cccceEEEEEEE-------------EC
Confidence 4579999999999999999998 33221 0 0111 001111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRTI-------TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TEEEEEEEECCTTGGGGTCC-------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CEEEEEEEEeCCCcHHHHHH-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 11367899999996432211 12233488999999999754321 112222222 123458999999984
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+.... .... .+ ..+ ..+...+|+..|.| ++.+++++.+.+
T Consensus 139 ~~~~~~-~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 180 (213)
T 3cph_A 139 TRVVTA-DQGE-------------ALAKEL--GIPFIESSAKNDDN-VNEIFFTLAKLI 180 (213)
T ss_dssp SCCSCH-HHHH-------------HHHHHH--TCCEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCH-HHHH-------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 332111 1100 00 011 12456789999999 999999887654
No 110
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.09 E-value=2e-10 Score=106.46 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||++++|. +.+... +.+ ....+...+ .
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~------~~~~~~-----~~~------t~~~~~~~~----------------------~ 63 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK------NDRLAT-----LQP------TWHPTSEEL----------------------A 63 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH------HSCCCC-----CCC------CCSCEEEEE----------------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCc-----ccc------CCCCCeEEE----------------------E
Confidence 3469999999999999999998 333211 111 000000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.++||||...... + .......+|.+++|+|++....... ....+.. ...+..+|.||+|.
T Consensus 64 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 64 IGNIKFTTFDLGGHIQARR-----L--WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp ETTEEEEEEECCCSGGGTT-----S--GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred ECCEEEEEEECCCCHHHHH-----H--HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence 1257889999999753221 0 1123348899999999986543222 2222211 12346999999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.... ..-.+....+.+. ..++.. .. ....+...+|+..|.| ++.+++++.+.
T Consensus 137 ~~~~-~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 189 (190)
T 1m2o_B 137 PNAV-SEAELRSALGLLN---TTGSQRIEG-QRPVEVFMCSVVMRNG-YLEAFQWLSQY 189 (190)
T ss_dssp TTCC-CHHHHHHHTTCSS---CCC---CCS-SCCEEEEECBTTTTBS-HHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHhCCcc---ccccccccc-cceEEEEEeECCcCCC-HHHHHHHHHhh
Confidence 6421 1111222222211 011111 00 1112446789999999 99999988764
No 111
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.09 E-value=1e-10 Score=105.58 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||+++.|. +.+.. ..+.+ ..++.++..... ...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 60 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM------YDSFD----NTYQA-----------TIGIDFLSKTMY-------------LED 60 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceeeEEEEEEEE-------------ECC
Confidence 569999999999999999998 22211 00100 001111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHh---ccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFK---QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~---~~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||....... ....+..+|.+++|+|++.... .......+. ....+..+|+||+|...
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSL-------IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEEEEECCSGGGGGG-------SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred eEEEEEEEECCCcHHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 2467899999996432211 1122237899999999975322 111222221 11234589999999753
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.......... +..... ..+...+|+..|.| ++.+++.+.+.+.
T Consensus 134 ~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 134 KRQVSTEEGE------------RKAKEL--NVMFIETSAKAGYN-VKQLFRRVAAALP 176 (179)
T ss_dssp GCCSCHHHHH------------HHHHHH--TCEEEEEBTTTTBS-HHHHHHHHHHTCC
T ss_pred cCcCCHHHHH------------HHHHHc--CCeEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 2111111000 000011 12446789999999 9999999988774
No 112
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=106.97 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+... .+.+ ..+..+...... ..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------~~~~~~~~~~~~-------------~~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA------DDTYTE----SYIS-----------TIGVDFKIRTIE-------------LD 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCS----CCCC-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCC----CCCC-----------cccceEEEEEEE-------------EC
Confidence 3579999999999999999998 222110 0000 001111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++.... .......+.. ...+..+|+||+|..
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTI-------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTT-------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEECCCcHhhhhh-------HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 12367899999996433211 1223347899999999986432 1112222222 123468999999985
Q ss_pred CCccch----hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~----ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... .......+ .+...+|+..|.| ++.+++++.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-v~~l~~~l~~~i 177 (196)
T 3tkl_A 135 TKKVVDYTTAKEFADSLG------------------IPFLETSAKNATN-VEQSFMTMAAEI 177 (196)
T ss_dssp TTCCSCHHHHHHHHHHTT------------------CCEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcC------------------CcEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 432111 11111111 2445689999999 998888876654
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.09 E-value=3.6e-10 Score=103.30 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+++|.+||||||+++.|. +.+.. ++ +.+ ..+.....+ .
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~-~~---~~~--------~~t~~~~~~-~--------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT------GKKVR-RG---KRP--------GVTRKIIEI-E--------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH------SCCCS-SS---SST--------TCTTSCEEE-E---------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------CcCCc-cC---CCC--------CccceeEEE-e---------------------
Confidence 58999999999999999998 54311 11 111 111111110 0
Q ss_pred CCcEEEEeCCCCCcc-------hHHHHHHHHHHHHH-hcCCCEEEEEeeCCccccHH-------------HHHHHHhccC
Q 011010 183 NCDLIIVDTSGRHKQ-------EAALFEEMRQVSEA-TVNPDLVIFVMDSSIGQAAF-------------DQAQAFKQSV 241 (495)
Q Consensus 183 ~~dvviIDTaG~~~~-------~~~l~~el~~i~~~-i~~~d~vllVvDa~~g~~~~-------------~~~~~f~~~~ 241 (495)
...+.|+||||.... .+............ ...++.+++|+|+....... ..........
T Consensus 43 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 43 WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 116789999995321 11222222233332 44678999999987543221 1112222222
Q ss_pred CceEEEEeCccCCCCccchh-HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 242 SVGAVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 242 ~~~~vIlTK~D~~~~~g~~l-s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.+..+|+||+|......... .+....+.|. ... ..+...+|+..|.| ++.+++++.+.+.
T Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPL---------SEI--DKVFIPISAKFGDN-IERLKNRIFEVIR 183 (190)
T ss_dssp CCEEEEEECGGGCSCHHHHHHHHHHHHTCCG---------GGH--HHHEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CceEEEeehHhccCcHHHHHHHHHHHhhhhh---------hcc--CCcEEEEecCCCCC-HHHHHHHHHHhcc
Confidence 33599999999865421111 1222122110 000 11346789999999 9999999887663
No 114
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.08 E-value=2e-10 Score=103.89 Aligned_cols=157 Identities=20% Similarity=0.095 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+. .. ...+ + .++.++......+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~------~~~~--------~~----~~~~-t--~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA------QETF--------GK----QYKQ-T--IGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------GGGT--------TH----HHHH-T--TTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHH------hCcC--------CC----CCCC-c--eeEEEEEEEEEeC------------C
Confidence 4579999999999999999998 3221 00 0011 1 1111111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc------cCCceEEEEeCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVTKM 251 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~------~~~~~~vIlTK~ 251 (495)
...+.+.|+||||....... ....+..+|.+++|+|++..... ......+.. ..++..+|.||+
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKM-------LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTT-------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCEEEEEEEECCCCccccch-------hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 01367899999997532211 11233488999999999854321 112222222 334458899999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
|............. .+ ..+ ..+...+|+..|.| ++.+++++.+.+.
T Consensus 126 Dl~~~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 172 (178)
T 2hxs_A 126 DLEHMRTIKPEKHL-------------RFCQEN--GFSSHFVSAKTGDS-VFLCFQKVAAEIL 172 (178)
T ss_dssp GGGGGCSSCHHHHH-------------HHHHHH--TCEEEEECTTTCTT-HHHHHHHHHHHHT
T ss_pred ccccccccCHHHHH-------------HHHHHc--CCcEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 98532111011000 00 011 12446789999999 9999999988764
No 115
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.08 E-value=1.5e-10 Score=107.06 Aligned_cols=158 Identities=14% Similarity=0.129 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+.. +.+.+ ..+..+....... .
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~~-------------~ 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV------QDHFD----HNISP-----------TIGASFMTKTVPC-------------G 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HCCCC----TTCCC-----------CSSEEEEEEEEEC-------------S
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCC-----------CcceeEEEEEEEe-------------C
Confidence 3579999999999999999998 32210 00100 0111111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++....... ....+... ..+..+|+||+|..
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSL-------APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGG-------THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEcCCCchhhHhh-------hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 12567899999996432211 1123347899999999976432211 22222221 23458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
........... +....+ ..+...+|+..|.| ++.|++.+.+.+.+
T Consensus 142 ~~~~v~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 142 DIREVPLKDAK------------EYAESI--GAIVVETSAKNAIN-IEELFQGISRQIPP 186 (192)
T ss_dssp GGCCSCHHHHH------------HHHHTT--TCEEEECBTTTTBS-HHHHHHHHHHTCC-
T ss_pred cccccCHHHHH------------HHHHHc--CCEEEEEeCCCCcC-HHHHHHHHHHHHHh
Confidence 32111111110 000111 12456789999999 99999999988753
No 116
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.08 E-value=3.1e-10 Score=122.48 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=44.6
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
.++.+.|+||||....... ....+..+|.+++|+|++.+..... ..........+..+|+||+|....
T Consensus 80 ~~~~i~liDTPG~~df~~~-------~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTED-------TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTEEEEEECCCCSTTCCHH-------HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CCEEEEEEECCCchhHHHH-------HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 3678999999997543322 3334457899999999987644322 223333322345899999998543
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.08 E-value=1.9e-10 Score=104.63 Aligned_cols=153 Identities=19% Similarity=0.105 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +.+..-... .. +.......
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~-----------t~-----~~~~~~~~----------------- 58 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ------IGEVVTTKP-----------TI-----GFNVETLS----------------- 58 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC------CSEEEEECS-----------ST-----TCCEEEEE-----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCcCccCC-----------cC-----ccceEEEE-----------------
Confidence 4679999999999999999998 555422211 00 01000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.++||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|.
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 59 YKNLKLNVWDLGGQTSIRPY-------WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp ETTEEEEEEEEC----CCTT-------GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred ECCEEEEEEECCCCHhHHHH-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 12567899999997432211 112334789999999987653322 22222222 12346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... ...+....+ ...+. ...+...+|+..|.| ++.+++++.+.+
T Consensus 132 ~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 178 (183)
T 1moz_A 132 PGALS-ASEVSKELN-----------LVELKDRSWSIVASSAIKGEG-ITEGLDWLIDVI 178 (183)
T ss_dssp TTCCC-HHHHHHHTT-----------TTTCCSSCEEEEEEBGGGTBT-HHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhC-----------cccccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 54311 111111111 00111 112456799999999 999999987765
No 118
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.07 E-value=3.5e-10 Score=101.19 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~~ 52 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFV------EDSFD---P-NINP-----------TIGASFMTKTVQ-------------YQN 52 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC---T-TCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECcCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ceeEEEEEEEEE-------------ECC
Confidence 469999999999999999998 32210 0 0000 011111100000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||...... . ....+..+|.+++|+|++...... .....+.. ...+..+|.||+|...
T Consensus 53 ~~~~~~~~Dt~G~~~~~~-~------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRA-L------APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEEEEEEECCSGGGGG-G------THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred eEEEEEEEcCCCchhhhc-c------cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 246789999999743221 1 112334789999999998643221 12222222 2234578889999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.......... .+.. ....+...+|+..|.| ++.|++++.+.+.
T Consensus 126 ~~~v~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~~-i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREVMERDAK-------------DYAD-SIHAIFVETSAKNAIN-INELFIEISRRIP 168 (170)
T ss_dssp GCCSCHHHHH-------------HHHH-HTTCEEEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred ccccCHHHHH-------------HHHH-HcCCEEEEEeCCCCcC-HHHHHHHHHHHHh
Confidence 2111111110 0000 0112446789999999 9999999988764
No 119
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=2.2e-10 Score=102.53 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.|. +.+.. +.+.+. .....+..+ . .. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~t-----~~~~~~~~~---~-~~----------------~ 48 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV------KGTFR----ESYIPT-----VEDTYRQVI---S-CD----------------K 48 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TCCCC----SSCCCC-----SCEEEEEEE---E-ET----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCCC-----ccccEEEEE---E-EC----------------C
Confidence 469999999999999999998 43211 001010 000000000 0 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHH---HHHHh---ccCCceEEEEeCcc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQ---AQAFK---QSVSVGAVIVTKMD 252 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~---~~~f~---~~~~~~~vIlTK~D 252 (495)
..+.+.|+||||........ ...+..+|.+++|+|++.... .... ...+. ...+ ..+|+||+|
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~D 120 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQ-------RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCD 120 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHH-------HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGG
T ss_pred EEEEEEEEECCCchhhHHHH-------HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccc
Confidence 24678999999976433211 112225799999999985322 1111 22222 1234 589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
............ +.+.. ....+...+|+..|.| ++.+++++.+.+.
T Consensus 121 l~~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 166 (172)
T 2erx_A 121 ESPSREVQSSEA-------------EALAR-TWKCAFMETSAKLNHN-VKELFQELLNLEK 166 (172)
T ss_dssp GGGGCCSCHHHH-------------HHHHH-HHTCEEEECBTTTTBS-HHHHHHHHHHTCC
T ss_pred cccccccCHHHH-------------HHHHH-HhCCeEEEecCCCCcC-HHHHHHHHHHHHh
Confidence 753311100000 00000 0012446789999999 9999999998874
No 120
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.06 E-value=2.9e-10 Score=104.68 Aligned_cols=156 Identities=16% Similarity=0.110 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|.+||||||+++.|. +.+...... .+ + .+.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~---~~----------t-~~~~~~~~~---------------- 63 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK------PSNAQSQNI---LP----------T-IGFSIEKFK---------------- 63 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS------CGGGCCSSC---CC----------C-SSEEEEEEE----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCc---CC----------c-cceeEEEEE----------------
Confidence 35679999999999999999998 543211111 00 0 011110000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc------cCCceEEEEeC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTK 250 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~------~~~~~~vIlTK 250 (495)
..++.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||
T Consensus 64 -~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK 135 (190)
T 2h57_A 64 -SSSLSFTVFDMSGQGRYRNL-------WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135 (190)
T ss_dssp -CSSCEEEEEEECCSTTTGGG-------GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEEC
T ss_pred -ECCEEEEEEECCCCHHHHHH-------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeC
Confidence 12578999999996433211 112334789999999998643221 22222221 12345899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+|...... ...+.... ....+. ...+...+|+..|.| ++.|++++.+.+
T Consensus 136 ~Dl~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 185 (190)
T 2h57_A 136 MDLRDAVT-SVKVSQLL-----------CLENIKDKPWHICASDAIKGEG-LQEGVDWLQDQI 185 (190)
T ss_dssp TTSTTCCC-HHHHHHHH-----------TGGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC
T ss_pred cCcccCCC-HHHHHHHh-----------ChhhccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 99864321 11111100 001111 112456789999999 999999998877
No 121
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.06 E-value=1.9e-09 Score=99.95 Aligned_cols=154 Identities=19% Similarity=0.103 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|.+||||||+++.|. +.+.. .. .| +. +..... ..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~---~~----------t~-~~~~~~-~~--------------- 69 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP----------TI-GFNVET-VE--------------- 69 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------SSCCE--EE---EE----------ET-TEEEEE-EE---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHH------hCCcc--cc---CC----------cC-ceeEEE-EE---------------
Confidence 35679999999999999999997 43321 11 11 00 010000 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D 252 (495)
..++.+.|+||||....... ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|
T Consensus 70 -~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 70 -YKNICFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp -ETTEEEEEEECC-----CTT-------HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred -ECCEEEEEEECCCCHhHHHH-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 12578899999997432211 1122337899999999986533222 2222221 1234689999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCccccc-ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... ....+....+ ..... ...+...+|+..|.| ++.+++++.+.+
T Consensus 142 l~~~~-~~~~i~~~~~-----------~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 189 (192)
T 2b6h_A 142 MPNAM-PVSELTDKLG-----------LQHLRSRTWYVQATCATQGTG-LYDGLDWLSHEL 189 (192)
T ss_dssp STTCC-CHHHHHHHTT-----------GGGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHT
T ss_pred CCCCC-CHHHHHHHhC-----------cccccCCceEEEECcCCCcCC-HHHHHHHHHHHH
Confidence 85431 1111221111 00010 112346789999999 999999998776
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.06 E-value=3.2e-10 Score=105.16 Aligned_cols=155 Identities=11% Similarity=0.058 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+. .+.+.+ ++ +..+...... .
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~~--------------~ 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFM------YDEF----VEDYEP---------TK--ADSYRKKVVL--------------D 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CTTCCT---------TC--CEEEEEEEEE--------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCCC----CCCCCC---------cc--ceEEEEEEEE--------------C
Confidence 4579999999999999999998 3331 111111 00 1111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... +. ...+..+|.+++|+|++...... .....+.. ...+..+|+||+|.
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~-~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAA-IR------DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHH-HH------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHH-HH------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 1246789999999754332 11 11222679999999998543211 11112221 12245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ +..... ..+...+|+..|.| ++.+++++.+.+
T Consensus 132 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~g~g-i~~l~~~l~~~i 175 (206)
T 2bov_A 132 EDKRQVSVEEAK------------NRAEQW--NVNYVETSAKTRAN-VDKVFFDLMREI 175 (206)
T ss_dssp GGGCCSCHHHHH------------HHHHHH--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccHHHHH------------HHHHHh--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 542211111110 000111 12456789999999 999999887765
No 123
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.06 E-value=9.5e-11 Score=104.71 Aligned_cols=155 Identities=12% Similarity=0.108 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++++|. +.... . .+.+ ..+..++..... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC------KGIFT---K-DYKK-----------TIGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HCCCC---C-CSSC-----------CCSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ceEEEEEEEEEE-------------EC
Confidence 3469999999999999999998 32211 1 1111 001111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh---ccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~---~~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+. ...+ ..+|+||+|..
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDA-I------TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLL 122 (168)
T ss_dssp TEEEEEEEECCTTGGGTTC-C------CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEcCCCcHhHHH-H------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccC
Confidence 1246789999999643211 0 11233478999999999854321 11122221 2334 58999999975
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +....+ ..+...+|+..|.| ++.+++++.+.+
T Consensus 123 ~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-i~~l~~~l~~~~ 165 (168)
T 1z2a_A 123 DDSCIKNEEAE------------GLAKRL--KLRFYRTSVKEDLN-VSEVFKYLAEKH 165 (168)
T ss_dssp GGCSSCHHHHH------------HHHHHH--TCEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred cccccCHHHHH------------HHHHHc--CCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 32111011100 000011 12446789999999 999999987654
No 124
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.06 E-value=8.7e-10 Score=100.86 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|.+||||||+++.|. +.+ . ..+.| + .+.......
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~--~---~~~~~----------t-~~~~~~~~~---------------- 58 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GED--V---DTISP----------T-LGFNIKTLE---------------- 58 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCC--C---SSCCC----------C-SSEEEEEEE----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCC--C---Ccccc----------c-CccceEEEE----------------
Confidence 35679999999999999999998 544 1 11111 0 011100000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D 252 (495)
..++.+.|+||||..... .+ ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|
T Consensus 59 -~~~~~~~~~Dt~G~~~~~-----~~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 59 -HRGFKLNIWDVGGQKSLR-----SY--WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp -ETTEEEEEEEECCSHHHH-----TT--GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred -ECCEEEEEEECCCCHhHH-----HH--HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence 125788999999973211 01 1233458899999999986543222 2222221 1234689999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... ...+....+ ...+ ....+...+|+..|.| ++.+++++.+.+.
T Consensus 131 l~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 131 LPGALS-CNAIQEALE-----------LDSIRSHHWRIQGCSAVTGED-LLPGIDWLLDDIS 179 (186)
T ss_dssp STTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCCCC-HHHHHHHhC-----------hhhccCCceEEEEeeCCCCCC-HHHHHHHHHHHHH
Confidence 854321 111111111 0001 1112456789999999 9999999987663
No 125
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.06 E-value=4.9e-10 Score=102.80 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-----cHHHHH-HHHhc-----cCCceEEEEeCc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-----AAFDQA-QAFKQ-----SVSVGAVIVTKM 251 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-----~~~~~~-~~f~~-----~~~~~~vIlTK~ 251 (495)
.+.+.|+||||....... ....+..+|.+++|+|++.+. +....+ ..+.+ ...+..+|.||+
T Consensus 73 ~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNAS-------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp EEEEEEEECCSCCSCSHH-------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECT
T ss_pred ceEEEEEeCCChHHHHHH-------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEch
Confidence 467899999996543321 122345899999999998431 112222 22211 122458999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|...... ..... +.... ..+.+...+|+..|.| ++.+++++.+.+
T Consensus 146 Dl~~~~~--~~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~i 190 (198)
T 3t1o_A 146 DLPDALP--VEMVR------------AVVDP-EGKFPVLEAVATEGKG-VFETLKEVSRLV 190 (198)
T ss_dssp TSTTCCC--HHHHH------------HHHCT-TCCSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred hcccccC--HHHHH------------HHHHh-cCCceEEEEecCCCcC-HHHHHHHHHHHH
Confidence 9854311 11110 00011 1122456789999999 999999887654
No 126
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.05 E-value=2.4e-10 Score=102.02 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.|. +.+.. +.+.+ ..+..+...... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 49 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV------SNDFA----ENKEP-----------TIGAAFLTQRVT-------------INE 49 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSCCC----TTCCC-----------CSSEEEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCCCC----CCCCC-----------ccceeEEEEEEE-------------ECC
Confidence 369999999999999999998 32211 01111 001111000000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||....... ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|...
T Consensus 50 ~~~~~~~~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASL-------APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEEEEECCSGGGGGG-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCChhhhhh-------hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 2467899999996433211 1223348899999999986432221 1222221 1234588999999854
Q ss_pred Ccc--chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g--~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... ....... +.+.. ....+...+|+..|.| ++.+++++.+.+.
T Consensus 123 ~~~~~~v~~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 123 EGGERKVAREEG------------EKLAE-EKGLLFFETSAKTGEN-VNDVFLGIGEKIP 168 (170)
T ss_dssp SSCCCCSCHHHH------------HHHHH-HHTCEEEECCTTTCTT-HHHHHHHHHTTSC
T ss_pred cccccCCCHHHH------------HHHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 311 1100000 00000 0112446789999999 9999999988764
No 127
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=107.25 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.... +.+ ..++.+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~----~~~-----------t~~~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFT------RNEFSHD----SRT-----------TIGVEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCSS----CCC-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCC----CCC-----------ccceeEEEEEEE-------------EC
Confidence 3579999999999999999998 3322111 110 011111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+... ..+..+|+||+|..
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~-~------~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRA-I------TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TEEEEEEEEEESCCCTTCT-T------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCchhhhh-h------hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 1256789999999754321 1 11233488999999999854321 1222222221 23468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+.. ....+...+|+..|.| ++.+++.+.+.+
T Consensus 144 ~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (193)
T 2oil_A 144 QAREVPTEEAR-------------MFAE-NNGLLFLETSALDSTN-VELAFETVLKEI 186 (193)
T ss_dssp GGCCSCHHHHH-------------HHHH-HTTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHH-------------HHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32111111110 0000 0112445689999999 999999887654
No 128
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.05 E-value=2.3e-10 Score=104.59 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=63.2
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||...... . ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|...
T Consensus 69 ~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRS-L------TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp EEEEEEEEECCSGGGHH-H------HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred EEEEEEEeCCCcHHHHH-H------HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 46789999999753321 1 23344589999999999754322 122222221 1234589999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... .+ ..+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 183 (195)
T 3bc1_A 142 QRAVKEEEAR-------------ELAEKY--GIPYFETSAANGTN-ISHAIEMLLDLI 183 (195)
T ss_dssp GCCSCHHHHH-------------HHHHHH--TCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHc--CCCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2111111110 00 011 12446789999999 999999887765
No 129
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.05 E-value=2.6e-10 Score=106.01 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||+++.|. +.+... .+.+ ..++.+...... ...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~~ 54 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYA------DDSFTP----AFVS-----------TVGIDFKVKTIY-------------RND 54 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------TCCCCS----CCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCC----CcCC-----------ccceeEEEEEEE-------------ECC
Confidence 469999999999999999998 443210 0111 011111100000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||...... + ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|...
T Consensus 55 ~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRT-I------TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp EEEEEEEEEECCSGGGHH-H------HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred eEEEEEEEECCCchhhcc-h------HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 246789999999753321 1 223344789999999998643221 11222222 1234689999999854
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... .+ ..+. .+...+|+..|.| +..+++++.+.+
T Consensus 128 ~~~~~~~~~~-------------~~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~i 169 (203)
T 1zbd_A 128 ERVVSSERGR-------------QLADHLG--FEFFEASAKDNIN-VKQTFERLVDVI 169 (203)
T ss_dssp SCCSCHHHHH-------------HHHHHHT--CEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHCC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211111110 00 0111 1446789999999 999998887654
No 130
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.05 E-value=5e-10 Score=118.21 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=41.5
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHH-hccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAF-KQSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f-~~~~~~~~vIlTK~ 251 (495)
.++.+.|+||||... +... ....+..+|.+++|+|++.+. .....+... ...++...+|+||+
T Consensus 93 ~~~~~~iiDTPGh~~----f~~~---~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 93 EKKHFTILDAPGHKS----FVPN---MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CCeEEEEEECCChHH----HHHH---HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 367899999999632 2222 233334789999999998752 222222222 22344358999999
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
|..
T Consensus 166 Dl~ 168 (439)
T 3j2k_7 166 DDP 168 (439)
T ss_pred CCc
Confidence 985
No 131
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=1.7e-10 Score=104.62 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||++++|. +.+.... .+.+ ..++.+...... ..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~---~~~~-----------t~~~~~~~~~~~-------------~~ 56 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFK------DGAFLAG---TFIS-----------TVGIDFRNKVLD-------------VD 56 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCCC---CCCC-----------CCSCEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCC---CcCC-----------ceeeEEEEEEEE-------------EC
Confidence 4579999999999999999998 3322110 1111 011111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~-----~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRS-----V--THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC---------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHH-----H--HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 1245789999999642211 1 12233478999999999864321 112222221 223468999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+ ... ..+...+|+..|.| ++.+++++.+.+
T Consensus 130 ~~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (180)
T 2g6b_A 130 HERVVKREDGE-------------KLAKEY--GLPFMETSAKTGLN-VDLAFTAIAKEL 172 (180)
T ss_dssp SCCCSCHHHHH-------------HHHHHH--TCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHH-------------HHHHHc--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 43211111110 00 011 12445689999999 999999987765
No 132
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.04 E-value=2.3e-10 Score=102.44 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.|. +.+.. +.+.+ ..+.......+. .. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-------~~~~~~~~~~~~-~~----------------~ 49 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFV------EDKFN----PSFIT-------TIGIDFKIKTVD-IN----------------G 49 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HCCCC----C--------------CCEEEEEEE-SS----------------S
T ss_pred eEEEEECcCCCCHHHHHHHHH------hCCCC----CCCCC-------ccceeEEEEEEE-EC----------------C
Confidence 469999999999999999998 33221 00000 000000000000 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||....... ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|...
T Consensus 50 ~~~~~~l~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTI-------TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp CEEEEEEECCTTGGGTSCC-------CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEEEeCCCChhhhhh-------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 2357899999996432210 11233478999999999854321 112222222 1234589999999843
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+.... .... .+ ..+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 123 ~~~~~-~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 163 (170)
T 1g16_A 123 RVVTA-DQGE-------------ALAKEL--GIPFIESSAKNDDN-VNEIFFTLAKLI 163 (170)
T ss_dssp CCSCH-HHHH-------------HHHHHH--TCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CccCH-HHHH-------------HHHHHc--CCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 32111 1110 00 011 12446789999999 999999887765
No 133
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.04 E-value=4.8e-10 Score=101.28 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|++||||||+++.|. +.+.. ..+.+ ..+..+....... .
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~~-------------~ 52 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYV------TNKFD----TQLFH-----------TIGVEFLNKDLEV-------------D 52 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----C---------------CCSEEEEEEEEEE-------------T
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ceeeeEEEEEEEE-------------C
Confidence 3569999999999999999998 22210 00000 0111111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHH---hc----cCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAF---KQ----SVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f---~~----~~~~~~vIlTK 250 (495)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+ .. ...+..+|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRS-----L--RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHH-----H--HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhh-----h--HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEEC
Confidence 1236789999999643221 1 12334478999999999864321 1111222 11 11245899999
Q ss_pred ccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 251 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
+|...+.-. ..... .+.......+...+|+..|.| ++.+++++.+.+
T Consensus 126 ~Dl~~~~~~-~~~~~-------------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (177)
T 1wms_A 126 IDISERQVS-TEEAQ-------------AWCRDNGDYPYFETSAKDATN-VAAAFEEAVRRV 172 (177)
T ss_dssp TTCSSCSSC-HHHHH-------------HHHHHTTCCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CcccccccC-HHHHH-------------HHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 998632211 11110 010001123456789999999 999999987764
No 134
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.04 E-value=5.2e-10 Score=120.76 Aligned_cols=134 Identities=15% Similarity=0.186 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+|+||||++++|+.+...-.....+.+.|.++....+..... ...++.+..... .+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E-~~rGiTi~~~~~-------------~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEME-KQRGISITTSVM-------------QFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTEE-------------EEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhc-ccCCcceeeeEE-------------EEE
Confidence 457999999999999999999843111111112233333333222221110 111121110000 011
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~~~ 256 (495)
..++.+.|+||||....... ....+..+|.+++|+|++.+.... ........ .++ ..+++||+|....
T Consensus 79 ~~~~~i~liDTPG~~df~~~-------~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~ 149 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSED-------TYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIR 149 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHH-------HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCS
T ss_pred ECCeEEEEEECCCChhHHHH-------HHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccc
Confidence 23678999999998543321 233445789999999998764322 22222222 344 5899999998644
No 135
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.04 E-value=1.2e-10 Score=108.39 Aligned_cols=155 Identities=15% Similarity=0.089 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..+.+ ..+..++...... .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~~-------------~ 53 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKA-----------TIGADFLTKEVMV-------------D 53 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC----SSCCC-----------CCSEEEEEEEEES-------------S
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC-----------cccceEEEEEEEE-------------C
Confidence 4579999999999999999998 33211 01111 0011111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh--------ccCCceEEEEe
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK--------QSVSVGAVIVT 249 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~--------~~~~~~~vIlT 249 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+. ...+ ..+|+|
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~n 125 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQS-L------GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGN 125 (207)
T ss_dssp SCEEEEEEEEECSSGGGSC-S------CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEE
T ss_pred CEEEEEEEEeCCCcHHHHH-h------HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEE
Confidence 1246789999999643211 0 11233478999999999854321 11112121 1233 589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 250 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|+|...+... ..... .+.......+...+|+..|.| ++.+++++.+.+
T Consensus 126 K~Dl~~~~~~-~~~~~-------------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 173 (207)
T 1vg8_A 126 KIDLENRQVA-TKRAQ-------------AWCYSKNNIPYFETSAKEAIN-VEQAFQTIARNA 173 (207)
T ss_dssp CTTSSCCCSC-HHHHH-------------HHHHHTTSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCcccccC-HHHHH-------------HHHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 9998633211 11110 010001223456789999999 999999987765
No 136
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.03 E-value=2.4e-10 Score=105.45 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+...... + . .+..+...... ..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~----~-------t----~~~~~~~~~~~-------------~~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD----L-------T----IGVEFGARMVN-------------ID 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCC--------------------CCSSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-------c----ccceeEEEEEE-------------EC
Confidence 4579999999999999999998 322211100 0 0 01111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRS-----I--TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSC-----C--CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhh-----h--HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 1246789999999643211 0 11233478999999999854322 112222222 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+ ... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 140 ~~~~v~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (191)
T 2a5j_A 140 SRRDVKREEGE-------------AFAREH--GLIFMETSAKTACN-VEEAFINTAKEI 182 (191)
T ss_dssp GGCCSCHHHHH-------------HHHHHH--TCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred CccccCHHHHH-------------HHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32111111110 00 001 12445689999999 999999887654
No 137
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.03 E-value=1.9e-10 Score=102.19 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|++||||||+++.|. +.+.. +.+.+.. ....... +. .. .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~~~-------~~~~~~~-~~-~~----------------~ 48 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV------TGTFI----EKYDPTI-------EDFYRKE-IE-VD----------------S 48 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC----SCCCTTC-------CEEEEEE-EE-ET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------cCCCc----ccCCCCc-------ceeEEEE-EE-EC----------------C
Confidence 469999999999999999998 22211 1111100 0000000 00 00 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||...... +. . ..+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~---~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFAS-MR---D---LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEEECCCTTCCHH-HH---H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHH-HH---H---HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 245689999999754322 11 1 122267999999999854321 111112211 123458999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+ ..+ ..+...+|+..|.| ++.+++++.+.+
T Consensus 122 ~~~~~~~~~~~-------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 164 (167)
T 1kao_A 122 SEREVSSSEGR-------------ALAEEW--GCPFMETSAKSKTM-VDELFAEIVRQM 164 (167)
T ss_dssp GGCCSCHHHHH-------------HHHHHH--TSCEEEECTTCHHH-HHHHHHHHHHHH
T ss_pred ccccCCHHHHH-------------HHHHHh--CCCEEEecCCCCcC-HHHHHHHHHHHH
Confidence 32111010000 00 001 12446689999999 999999887654
No 138
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.03 E-value=5.4e-10 Score=110.24 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
+....|+++|.+||||||++|.|. +.++...+. ++....+. ....+.++......+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~------~~~~~~~~~----~~~~~~~~---~t~~~~~~~~~~~~~----------- 61 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLF------LTDLYSPEY----PGPSHRIK---KTVQVEQSKVLIKEG----------- 61 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHS------SSCC----------------------CCCEEEEEEECC------------
T ss_pred ccEEEEEEECCCCCCHHHHHHHHh------CCCccccCC----CCcccccC---CceEEEEEEEEEecC-----------
Confidence 444579999999999999999998 766654432 00000001 111121111110000
Q ss_pred HhhcCCcEEEEeCCCCCcc------hHHHHHHH----HHHHHH-h---------cCCCEEEEEeeCCc-ccc--HHHHHH
Q 011010 179 FKKENCDLIIVDTSGRHKQ------EAALFEEM----RQVSEA-T---------VNPDLVIFVMDSSI-GQA--AFDQAQ 235 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~------~~~l~~el----~~i~~~-i---------~~~d~vllVvDa~~-g~~--~~~~~~ 235 (495)
...+.+.|+||||.... ...+...+ ...... . ..+|.++++++++. +.. .....+
T Consensus 62 --~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~ 139 (274)
T 3t5d_A 62 --GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK 139 (274)
T ss_dssp ---CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHH
T ss_pred --CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHH
Confidence 01347899999997311 12222222 111111 0 03668888887653 333 333455
Q ss_pred HHhccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCc-ccccc-cCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 236 AFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 236 ~f~~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~-f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.+....+ ..+|+||+|...... +.... +.+ ..+.. ..+...+|+..|.| +..|.+++.+.+|
T Consensus 140 ~l~~~~p-vi~V~nK~D~~~~~e--~~~~~------------~~i~~~l~~~~i~v~~~sa~~~~~-~~~l~~~l~~~~p 203 (274)
T 3t5d_A 140 RLHEKVN-IIPLIAKADTLTPEE--CQQFK------------KQIMKEIQEHKIKIYEFPETDDEE-ENKLVKKIKDRLP 203 (274)
T ss_dssp HHTTTSC-EEEEESSGGGSCHHH--HHHHH------------HHHHHHHHHTTCCCCCC------------CHHHHHTCS
T ss_pred HHhccCC-EEEEEeccCCCCHHH--HHHHH------------HHHHHHHHHcCCeEEcCCCCCChh-HHHHHHHHhcCCC
Confidence 5555444 599999999864321 11110 011 11111 11233467788888 8888888888775
No 139
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.03 E-value=6.7e-10 Score=103.82 Aligned_cols=157 Identities=15% Similarity=0.069 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. . .+.+ + .+..+...... ..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~------~~~~~---~-~~~~----------t-~~~~~~~~~~~-------------~~ 74 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFK------TGAFS---E-RQGS----------T-IGVDFTMKTLE-------------IQ 74 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSCC-------------------------CEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------hCCCC---C-CCCC----------C-cceEEEEEEEE-------------EC
Confidence 3579999999999999999997 32211 0 0000 0 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ...+..+|.||+|..
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-~------~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRT-I------TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHH-H------HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHH-H------HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 1236889999999753321 1 12334488999999998754321 112222222 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+.....+.+...+|+..|.| ++.+++++.+.+
T Consensus 148 ~~~~v~~~~~-------------~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 191 (201)
T 2hup_A 148 ELREVSLAEA-------------QSLAEHYDILCAIETSAKDSSN-VEEAFLRVATEL 191 (201)
T ss_dssp GGCCSCHHHH-------------HHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHH-------------HHHHHHcCCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4211101101 0010001112456789999999 999999987765
No 140
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=5e-10 Score=103.28 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. +.+.+ + .+..+..... ..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~----------t-~~~~~~~~~~--------------~~ 52 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFV------KGTFR----DTYIP----------T-IEDTYRQVIS--------------CD 52 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------HSCCC----CTTSC----------C-CCEEEEEEEE--------------ET
T ss_pred eeEEEEECCCCCcHHHHHHHHH------cCCCC----CcccC----------c-cccceeEEEE--------------EC
Confidence 4579999999999999999998 32110 11111 0 0000000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHH---HHHHhc---cCCceEEEEeCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQ---AQAFKQ---SVSVGAVIVTKM 251 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~---~~~f~~---~~~~~~vIlTK~ 251 (495)
...+.+.|+||||...... +. ...+..+|.+++|+|++.... .... +..+.. ..+ ..+|+||+
T Consensus 53 ~~~~~~~l~Dt~G~~~~~~-~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~ 124 (199)
T 2gf0_A 53 KSVCTLQITDTTGSHQFPA-MQ------RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKC 124 (199)
T ss_dssp TEEEEEEEEECCGGGSCHH-HH------HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECT
T ss_pred CEEEEEEEEeCCChHHhHH-HH------HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 1246789999999654321 11 112226799999999975322 1111 222221 234 59999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
|...+.-....... ....+ ..+...+|+..|.| ++.|++++.+.+.+
T Consensus 125 Dl~~~~~~~~~~~~-------------~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 125 DETQREVDTREAQA-------------VAQEW--KCAFMETSAKMNYN-VKELFQELLTLETR 171 (199)
T ss_dssp TCSSCSSCHHHHHH-------------HHHHH--TCEEEECBTTTTBS-HHHHHHHHHHHCSS
T ss_pred cCCccccCHHHHHH-------------HHHHh--CCeEEEEecCCCCC-HHHHHHHHHHHHhh
Confidence 98643211111100 00011 12345689999999 99999999988753
No 141
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.02 E-value=4.1e-09 Score=107.88 Aligned_cols=47 Identities=34% Similarity=0.432 Sum_probs=39.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL 148 (495)
..++++.|.+|+||||++.+||.++++.|++|++|++|+ ++...+.+
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l 72 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDIF 72 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHh
Confidence 345666699999999999999999999999999999999 45444443
No 142
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.02 E-value=2.8e-10 Score=103.83 Aligned_cols=150 Identities=13% Similarity=0.060 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.|. +... .+.+.+ ++........... .
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~------~~~~----~~~~~~---------t~~~~~~~~~~~~----------------~ 49 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLI------QNHF----VDEYDP---------TIEDSYRKQVVID----------------G 49 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSSC----CCCCCT---------TCCEEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHH------hCCC----CCCCCC---------CchheEEEEEEEC----------------C
Confidence 469999999999999999998 3321 111111 1100000000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||........ . ..+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~----~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMR----D---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTH----H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHH----H---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 24567889999964322111 1 122257999999999854321 112222222 123458999999986
Q ss_pred CCccch---hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~---ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+.... .......+ .+...+|+..|.| ++.+++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~~ 164 (189)
T 4dsu_A 123 SRTVDTKQAQDLARSYG------------------IPFIETSAKTRQG-VDDAFYTLVREI 164 (189)
T ss_dssp SCSSCHHHHHHHHHHHT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 432111 11111111 2446689999999 999999987765
No 143
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.01 E-value=1.1e-09 Score=102.29 Aligned_cols=163 Identities=18% Similarity=0.131 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-eEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k-VaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+|+|++||||||+++.|+ |.. +..++. ....+... ..+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~------g~~~~~~~~~-----------~~G~~~~~-~~~~------------------ 69 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT------NQKSLARTSK-----------TPGRTQLI-NLFE------------------ 69 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC------CC------------------------CCE-EEEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCccccccC-----------CCccceee-EEEE------------------
Confidence 4579999999999999999998 654 333332 11111110 0000
Q ss_pred hhcCCcEEEEeCCCCCcch------HHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCc
Q 011010 180 KKENCDLIIVDTSGRHKQE------AALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKM 251 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~------~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~ 251 (495)
..+ .+.++||||..... ..+...+..+......++.+++|+|++.+....+ ..........+..+|.||+
T Consensus 70 -~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 70 -VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp -EET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred -ecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc
Confidence 012 57899999974311 1111122223333336788999999876433221 2222222222346789999
Q ss_pred cCCCCccch--hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 252 DGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 252 D~~~~~g~~--ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
|....+... +.... ..+.+.....+..++|++.+.| +..+++.+.+..++
T Consensus 148 D~~s~~~~~~~~~~~~------------~~~~~~~~~~~~~~~Sal~~~~-~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 148 DKLASGARKAQLNMVR------------EAVLAFNGDVQVETFSSLKKQG-VDKLRQKLDTWFSE 199 (210)
T ss_dssp GGSCHHHHHHHHHHHH------------HHHGGGCSCEEEEECBTTTTBS-HHHHHHHHHHHHC-
T ss_pred cCCCchhHHHHHHHHH------------HHHHhcCCCCceEEEeecCCCC-HHHHHHHHHHHHhh
Confidence 976432111 11111 0111111223456789999999 99999999887643
No 144
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.01 E-value=3.6e-10 Score=103.81 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+..|+++|.+||||||+++.|+ +.+.. +.+.+ ++...........
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~---------t~~~~~~~~~~~~---------------- 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLI------QNHFV----DEYDP---------TIEDSYRKQVVID---------------- 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSCC----SCCCT---------TCCEEEEEEEEET----------------
T ss_pred eeEEEEECcCCCCHHHHHHHHH------cCCCc----cccCC---------ccceEEEEEEEEC----------------
Confidence 3579999999999999999998 32210 11111 0000000000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---H---HHHHhc-cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---Q---AQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~---~~~f~~-~~~~~~vIlTK~D~ 253 (495)
...+++.|+||||...... + ....+..+|.+++|+|++......+ . +..+.. ...+..+|+||+|.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSA-----M--RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp TEEEEEEEEECCC------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred CEEEEEEEEECCChHHHHH-----H--HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 1246789999999642211 1 1233447899999999985432111 1 122221 12245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..+......... ....+. .+...+|+..|.| +..+++++.+.+
T Consensus 139 ~~~~~~~~~~~~-------------~~~~~~--~~~~~~Sa~~~~g-i~~l~~~l~~~~ 181 (190)
T 3con_A 139 PTRTVDTKQAHE-------------LAKSYG--IPFIETSAKTRQG-VEDAFYTLVREI 181 (190)
T ss_dssp SCCCSCHHHHHH-------------HHHHHT--CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CcccCCHHHHHH-------------HHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 643211111110 001111 1456789999999 999999987765
No 145
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.01 E-value=2.4e-10 Score=102.43 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+.. +.+.+ ..+..+....... .
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~~-------------~ 51 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYC------ENKFN----DKHIT-----------TLGASFLTKKLNI-------------G 51 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCC----SSCCC-----------CCSCEEEEEEEES-------------S
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----cCCCC-----------ccceEEEEEEEEE-------------C
Confidence 3469999999999999999998 32210 00101 0011111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+.. ...+..+|+||+|..
T Consensus 52 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 52 GKRVNLAIWDTAGQERFHA-----L--GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp SCEEEEEEEECCCC--------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCcHhhhh-----h--HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 1245788999999632211 1 1123347899999999986432111 1112211 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +....+ ..+...+|+..|.| ++.+++++.+.+
T Consensus 125 ~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (170)
T 1z08_A 125 KERHVSIQEAE------------SYAESV--GAKHYHTSAKQNKG-IEELFLDLCKRM 167 (170)
T ss_dssp GGCCSCHHHHH------------HHHHHT--TCEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHHH------------HHHHHc--CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 42111111110 000011 12345689999999 999999987654
No 146
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.01 E-value=2.7e-10 Score=105.68 Aligned_cols=158 Identities=14% Similarity=0.066 Sum_probs=60.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.++...+. +.+ +.............
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~--~~~---------t~~~~~~~~~~~~~--------------- 67 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFT------SKGSKFLKD--YAM---------TSGVEVVVAPVTIP--------------- 67 (208)
T ss_dssp EEEEEEC---------------------------------------------------CEEEECT---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCcccCC--CCC---------ccceEEEEEEEEEC---------------
Confidence 3579999999999999999998 442222211 111 11000000000000
Q ss_pred hc--CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc------cCCceEEEEe
Q 011010 181 KE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVT 249 (495)
Q Consensus 181 ~~--~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~------~~~~~~vIlT 249 (495)
.. .+.+.|+||||..... .+ ....+..+|.+++|+|++...... .....+.. ...+..+|+|
T Consensus 68 ~~~~~~~~~l~Dt~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 68 DTTVSVELFLLDTAGSDLYK-----EQ--ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp TSSEEEEEEEEETTTTHHHH-----HH--HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred CcccEEEEEEEECCCcHHHH-----HH--HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence 01 4578999999974211 11 223445889999999998643221 12222222 1234689999
Q ss_pred CccCCC-CccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhcc-CCCCcHHHHHHHHHhC
Q 011010 250 KMDGHA-KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL-GMGDWSGFMDKIHEVV 312 (495)
Q Consensus 250 K~D~~~-~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~-G~Gdi~~L~e~i~~~~ 312 (495)
|+|... .......... +....+. .+...+|+.. |.| +..+++++.+.+
T Consensus 141 K~Dl~~~~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~g-i~~l~~~i~~~~ 190 (208)
T 2yc2_C 141 KTDLPPQRHQVRLDMAQ------------DWATTNT--LDFFDVSANPPGKD-ADAPFLSIATTF 190 (208)
T ss_dssp CC-------CCCHHHHH------------HHHHHTT--CEEEECCC--------CHHHHHHHHHH
T ss_pred CcccchhhccCCHHHHH------------HHHHHcC--CEEEEeccCCCCcC-HHHHHHHHHHHH
Confidence 999864 2111011110 0001111 2446789999 999 999999987765
No 147
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.01 E-value=2.3e-10 Score=105.26 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+... .+.+ ..+..+...... ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYA------DDSFTP----AFVS-----------TVGIDFKVKTVY-------------RH 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCC----SCCC-----------CCCCEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCCC----CcCC-----------ceeEEEEEEEEE-------------EC
Confidence 3579999999999999999998 322110 0000 011111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++.... .......+.. ...+..+|+||+|..
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTI-------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCS-------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CeEEEEEEEeCCCcHHHhhh-------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 12567899999996432210 1223448899999999975432 1122222222 123468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+ ..+. .+...+|+..|.| ++.|++++.+.+
T Consensus 141 ~~~~~~~~~~~-------------~~~~~~~--~~~~~~Sa~~g~g-i~~l~~~l~~~i 183 (189)
T 2gf9_A 141 DERVVPAEDGR-------------RLADDLG--FEFFEASAKENIN-VKQVFERLVDVI 183 (189)
T ss_dssp GGCCSCHHHHH-------------HHHHHHT--CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCCHHHHH-------------HHHHHcC--CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 42111111110 00 0111 1446789999999 999999887654
No 148
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.01 E-value=4.4e-09 Score=107.18 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.+++++.|..|+||||++.+||.++++.|++|++|++|+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4577778999999999999999999999999999999963
No 149
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.00 E-value=7.5e-10 Score=101.71 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=88.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+.. +. .| +. +.......
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~------~~~~~--~~---~~---------t~--~~~~~~~~----------------- 62 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH------LGDVV--TT---VP---------TV--GVNLETLQ----------------- 62 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC------CSCCE--EE---CS---------ST--TCCEEEEE-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC--Cc---CC---------CC--ceEEEEEE-----------------
Confidence 4579999999999999999996 43321 11 11 00 11000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
..++.+.|+||||....... ....+..+|.+++|+|++...... .....+.. ...+..+|+||+|.
T Consensus 63 ~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 63 YKNISFEVWDLGGQTGVRPY-------WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp ETTEEEEEEEECCSSSSCCC-------CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred ECCEEEEEEECCCCHhHHHH-------HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 12568899999996432210 112234789999999998653322 22222222 12346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+. +.... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 136 ~~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 183 (189)
T 2x77_A 136 PDAAS-EAEIAEQLGV--------SSIMN--RTWTIVKSSSKTGDG-LVEGMDWLVERLR 183 (189)
T ss_dssp TTCCC-HHHHHHHTTG--------GGCCS--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cCCCC-HHHHHHHhCh--------hhccC--CceEEEEccCCCccC-HHHHHHHHHHHHH
Confidence 64321 1111111110 00011 111456799999999 9999999887653
No 150
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.00 E-value=3.9e-10 Score=102.87 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. +.+.+ ..+..+...... ..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFI------EKKFK----DDSNH-----------TIGVEFGSKIIN-------------VG 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC----TTCCC-----------CSEEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------ccceEEEEEEEE-------------EC
Confidence 3579999999999999999998 32211 00000 001111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHH---HHHhccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQA---QAFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~---~~f~~~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++...... ... ........+..+|+||+|..
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRS-V------TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp TEEEEEEEEEECCSGGGHH-H------HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHHHHH-H------HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 1236789999999753321 1 223445889999999998643211 111 12212223468999999984
Q ss_pred CCccch-hHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGA-LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~-ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... ..... .... ...+...+|+..|.| ++.+++++.+.+
T Consensus 129 ~~~~~~~~~~~~-------------~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (186)
T 2bme_A 129 ADREVTFLEASR-------------FAQE--NELMFLETSALTGEN-VEEAFVQCARKI 171 (186)
T ss_dssp GGCCSCHHHHHH-------------HHHH--TTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHH-------------HHHH--cCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 321110 11100 0000 112445689999999 999999887654
No 151
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.00 E-value=9.4e-10 Score=102.27 Aligned_cols=158 Identities=14% Similarity=0.074 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|.+||||||+++.|. +.+.. +.+.+ . .+..+...... .
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~------t-----~~~~~~~~~~~-------------~ 72 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC------KNEFR----ENISA------T-----LGVDFQMKTLI-------------V 72 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH------HCCCC-------------------------CEEEEEE-------------E
T ss_pred CCeEEEEECcCCCCHHHHHHHHH------hCCCC----ccCCC------C-----ccceeEEEEEE-------------E
Confidence 35679999999999999999998 32210 00000 0 01111000000 0
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
....+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|.
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~-~------~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRS-I------AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHH-H------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred CCEEEEEEEEECCCCcchhh-h------HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 01246789999999754322 1 11222368999999999754321 111222221 12235899999997
Q ss_pred CCCc-----cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKG-----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~-----g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... ....... ++.+.. ....+...+|+..|.| ++.+++++.+.+
T Consensus 146 ~~~~~~~~~~~v~~~~------------~~~~~~-~~~~~~~~~SA~~g~g-v~el~~~l~~~i 195 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHF------------GEKLAM-TYGALFCETSAKDGSN-IVEAVLHLAREV 195 (199)
T ss_dssp HHHHHHTTCCCCCHHH------------HHHHHH-HHTCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccccccccccCHHH------------HHHHHH-HcCCeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 4210 0000000 000100 0112445689999999 999999987765
No 152
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.00 E-value=1.5e-09 Score=117.08 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCC-ChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~-dp~~ia~~~l~~~ 179 (495)
...|+++|.+||||||+++.|. +.+.. . .+.+ ..++.+....... ..+.+ ..
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~------~~~~~---~-~~~~-----------t~g~~~~~~~~~~~~~v~~------~~ 93 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLI------GETFD---P-KESQ-----------THGLNVVTKQAPNIKGLEN------DD 93 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHH------C--------------------------CCCEEEEEGGGSGGGTT------CS
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------ccceEEEEeccccccceee------cC
Confidence 4579999999999999999998 43321 0 0000 0111111000000 00000 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhccC--CceEEEEeCccCCCCc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQSV--SVGAVIVTKMDGHAKG 257 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~~~--~~~~vIlTK~D~~~~~ 257 (495)
...++.+.|+||||...... +.. ..+..+|.+++|+|++...........+.... .+..+|.||+|.....
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~-~~~------~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHA-SHQ------FFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSY 166 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTT-TCH------HHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTC
T ss_pred CCceEEEEEEECCcHHHHHH-HHH------HHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCccccc
Confidence 01267899999999532221 110 11227899999999986654433333333221 3458999999986433
Q ss_pred cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 258 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 258 g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
........ +....+. .+...+|+..|.| ++.|++.+.+.+.
T Consensus 167 ~v~~~~~~------------~~~~~~~--~~~~~vSA~~g~g-i~eL~~~l~~~~~ 207 (535)
T 3dpu_A 167 NIEQKKIN------------ERFPAIE--NRFHRISCKNGDG-VESIAKSLKSAVL 207 (535)
T ss_dssp CCCHHHHH------------HHCGGGT--TCEEECCC------CTTHHHHHHHHHT
T ss_pred ccCHHHHH------------HHHHhcC--CceEEEecCcccC-HHHHHHHHHHHHh
Confidence 21111111 0011111 1345677888887 8888877776653
No 153
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.00 E-value=3.5e-09 Score=109.21 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc--------
Q 011010 71 KRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------- 141 (495)
Q Consensus 71 ~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG-~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R-------- 141 (495)
+.+.+++.+.....+.... ..+......++++|+|++ ..|+||||++.+||..|+++|++|++|++|.+.
T Consensus 114 ~~~~i~~ei~~~~~e~~~~-~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~ 192 (373)
T 3fkq_A 114 RVDVIFKQILGVYSDMAAN-VATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQA 192 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCC
T ss_pred CHHHHHHHHHHHHhhcccc-cccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCC
Confidence 3444554444444332211 112333445678999985 779999999999999999999999999999321
Q ss_pred ---chhHHHHHh--------------hh--hhcCcceeccCCC-CCh----HHHHHHHHHHHh-hcCCcEEEEeCCCCCc
Q 011010 142 ---AGAFDQLKQ--------------NA--TKAKIPFYGSYTE-SDP----VRIAVEGVETFK-KENCDLIIVDTSGRHK 196 (495)
Q Consensus 142 ---~~a~dqL~~--------------~a--~~~~i~~~~~~~~-~dp----~~ia~~~l~~~~-~~~~dvviIDTaG~~~ 196 (495)
.+-.+.+.. .. ...++.+...... .++ .......++.+. ...||+||||||+...
T Consensus 193 ~~~~~l~d~l~~~~~~~~~~~~~l~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~ 272 (373)
T 3fkq_A 193 EGNATMSDVIYSLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLE 272 (373)
T ss_dssp SCSCCHHHHHHHHHSCCSCHHHHHHHTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCC
T ss_pred CCCCCHHHHHhhhhcccccccccHHHHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence 111111111 11 1134443332211 111 112223333332 2589999999986543
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 197 QEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 197 ~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
.. ....+..+|.+++|+.+..
T Consensus 273 ~~---------~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 273 IE---------KLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp HH---------HHHHHTTCSEEEEEECCCH
T ss_pred HH---------HHHHHHHCCEEEEEecCCc
Confidence 22 1223347899999998864
No 154
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.00 E-value=3.7e-10 Score=102.08 Aligned_cols=155 Identities=13% Similarity=0.056 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +... + ..+.+ ++. ..+...... .
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~------~~~~--~--~~~~~---------t~~--~~~~~~~~~--------------~ 53 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI------QSYF--V--SDYDP---------TIE--DSYTKICSV--------------D 53 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSC--C--SSCCT---------TCC--EEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcC--c--cccCC---------CcC--ceEEEEEEE--------------C
Confidence 4579999999999999999998 3211 0 01111 111 111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHH----hccCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAF----KQSVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f----~~~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... +. . ..+..+|.+++|+|++...... .....+ .....+..+|+||+|.
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~-~~---~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGA-MR---E---QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSC-CH---H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHH-HH---H---HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1236788999999643221 11 1 1122579999999998643211 111122 1112245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ .+. .....+...+|+..|.| ++.+++++.+.+
T Consensus 127 ~~~~~v~~~~~~-------------~~~-~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 170 (181)
T 2fn4_A 127 ESQRQVPRSEAS-------------AFG-ASHHVAYFEASAKLRLN-VDEAFEQLVRAV 170 (181)
T ss_dssp GGGCCSCHHHHH-------------HHH-HHTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccCHHHHH-------------HHH-HHcCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 542111011110 000 01112446789999999 999999887765
No 155
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.99 E-value=3.5e-10 Score=105.48 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. . .+.+ ..++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFS------DDTYT---N-DYIS-----------TIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HCCCC---T-TCCC-----------SSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------cccceeEEEEEE-------------EC
Confidence 3579999999999999999998 32211 0 0100 011111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++....... ....+.. ...+..+|+||+|..
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRTI-------TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp TEEEEEEEECCTTTTTTTCC-------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEeCCChHHHHHH-------HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 12467899999996432110 1123448899999999986432221 1222221 223458999999986
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... .+.. ....+...+|+..|.| ++.+++++.+.+
T Consensus 127 ~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~i 169 (206)
T 2bcg_Y 127 DKRVVEYDVAK-------------EFAD-ANKMPFLETSALDSTN-VEDAFLTMARQI 169 (206)
T ss_dssp TTCCSCHHHHH-------------HHHH-HTTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHH-------------HHHH-HcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 43211111110 0000 0112446789999999 999999887765
No 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.99 E-value=1.4e-09 Score=113.30 Aligned_cols=113 Identities=18% Similarity=0.103 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-c--HHHHHHHHhc-cCCceEEEEeCccCCCCccc
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-A--AFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~--~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g~ 259 (495)
..+.|+||||...... .....+..+|.+++|+|++.+. . ..+....... ..++..+|+||+|......
T Consensus 75 ~~~~iiDtPGh~~~~~-------~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~- 146 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA-------TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE- 146 (403)
T ss_dssp EEEEEEECCCCGGGHH-------HHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-
T ss_pred ceEEEEECCCcHHHHH-------HHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH-
Confidence 6789999999643221 1233334899999999998653 2 1222222222 2334689999999864321
Q ss_pred hhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 260 ALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 260 ~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
......... +.+... ....|..++|++.|.| ++.|++.+.+.++.
T Consensus 147 ~~~~~~~i~---------~~l~~~~~~~~~ii~vSA~~g~g-i~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 147 ALSQYRQIK---------QFTKGTWAENVPIIPVSALHKIN-IDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHH---------HHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHH---------HHHHhhCCCCCEEEEEECCCCcC-hHHHHHHHHHhCCC
Confidence 111110000 000000 1133567899999999 99999999997753
No 157
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.99 E-value=3.8e-10 Score=105.33 Aligned_cols=155 Identities=14% Similarity=0.023 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+...... + ..+.......+. ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~----~-------t~~~~~~~~~~~-~~---------------- 70 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI------ENKFKQDSN----H-------TIGVEFGSRVVN-VG---------------- 70 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------C-----------------------CCEEEEEEE-ET----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCccCC----C-------cccceeEEEEEE-EC----------------
Confidence 3579999999999999999998 433221110 0 000000000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||..... .+ ....+..+|.+++|+|++..... ......+.. ...+..+|+||+|..
T Consensus 71 ~~~~~l~l~Dt~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFR-----SV--TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TEEEEEEEECCTTHHHHS-----CC--CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CeeeEEEEEcCCCcHhHH-----HH--HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 123688999999952111 01 12234478999999999854321 112222221 123468999999984
Q ss_pred CCccc-hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~-~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... ...... .... ...+...+|+..|.| ++.+++.+.+.+
T Consensus 144 ~~~~v~~~~~~~-------------~~~~--~~~~~~~~SA~~g~g-i~~l~~~l~~~i 186 (200)
T 2o52_A 144 PEREVTFLEASR-------------FAQE--NELMFLETSALTGEN-VEEAFLKCARTI 186 (200)
T ss_dssp GGCCSCHHHHHH-------------HHHH--TTCEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHH-------------HHHH--cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 32111 011110 0000 112345689999999 999999887654
No 158
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=98.99 E-value=6.3e-09 Score=105.13 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh-----------HHHHHhh--------------hhh
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQN--------------ATK 154 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a-----------~dqL~~~--------------a~~ 154 (495)
..++|+|.|.-||||||++.+||..|++.|+||++|++|++-... .+..... ...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 126 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGF 126 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECG
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeecC
Confidence 457999999999999999999999999999999999999854322 1111100 001
Q ss_pred cCcceeccCCC----CChHHHHHHHHHHH----hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 155 AKIPFYGSYTE----SDPVRIAVEGVETF----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 155 ~~i~~~~~~~~----~dp~~ia~~~l~~~----~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
.++.+...... ..........+..+ ..+.||++++|+||-..... +..++..+|.+++|+.+..
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~--------~~~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG--------FAAPLQHADQAVVVTANDF 198 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG--------GGGGGGTCSEEEEEECSSH
T ss_pred CCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhh--------hHhHHhhCCeEEEEeCCcH
Confidence 12222211110 00111112222222 33579999999987532221 1122337899999998753
Q ss_pred c--ccHHH---HHHHHhcc--CCceEEEEeCccCCCCccchhHHHHhcCCCeE
Q 011010 227 G--QAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 272 (495)
Q Consensus 227 g--~~~~~---~~~~f~~~--~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~ 272 (495)
. .+..+ .++.+... .++.++|+|+.+... ..-......+.|+.
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~---~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD---EVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH---HHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh---HHHHHHHHhCCeEE
Confidence 1 12222 22333332 345689999876532 22334445565543
No 159
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.98 E-value=1.2e-09 Score=102.82 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=61.7
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHHHHHHhc-------cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQAQAFKQ-------SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~~~~f~~-------~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||... . ..+ ....+..+|.+++|+|++...........+.. ...+..+|+||+|...
T Consensus 83 ~~~l~l~Dt~G~~~----~-~~~--~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 83 KVHLQLWDTAGQER----F-RSL--TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEEEEESHHH----H-HHH--HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred eEEEEEEECCCcHh----H-HhH--HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 46789999999521 1 111 22344588999999999864432222222221 1134689999999853
Q ss_pred CccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... .+ ..+ ..+...+|+..|.| ++.+++++.+.+
T Consensus 156 ~~~v~~~~~~-------------~~~~~~--~~~~~~~Sa~~g~g-i~~l~~~l~~~i 197 (217)
T 2f7s_A 156 QREVNERQAR-------------ELADKY--GIPYFETSAATGQN-VEKAVETLLDLI 197 (217)
T ss_dssp GCCSCHHHHH-------------HHHHHT--TCCEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHHC--CCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 2111011110 00 001 12346689999999 999999887754
No 160
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=4.1e-10 Score=103.37 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+.. . .+.+ ..++.+...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT------DDTFD---P-ELAA-----------TIGVDFKVKTIS-------------VD 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---c-cCCC-----------ccceEEEEEEEE-------------EC
Confidence 3579999999999999999998 32210 0 0000 001111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhcc----CCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~----~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||....... ....+..+|.+++|+|++..... ......+... ..+..+|+||+|.
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTL-------TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCS-------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred CeEEEEEEEeCCCchhhhhh-------hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 12567899999996432211 12233488999999999854322 2222333321 1345899999998
Q ss_pred CCCccc---hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~---~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..+.-. +..... .. ..+...+|+..|.| ++.+++++.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~----------------~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 134 ENREVDRNEGLKFAR----------------KH--SMLFIEASAKTCDG-VQCAFEELVEKII 177 (195)
T ss_dssp SSCCSCHHHHHHHHH----------------HT--TCEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHH----------------Hc--CCEEEEecCCCCCC-HHHHHHHHHHHHH
Confidence 533111 111111 11 12345689999999 9999999887663
No 161
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.98 E-value=1.6e-10 Score=118.15 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc-CcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~-~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.|+|+|.|||||||+++.|. +.++.+ +. .+.+|.. .+..+. ..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~------~~~~~i-~~-----------~~ftTl~p~~g~v~-~~----------------- 203 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS------SAKPKI-AD-----------YHFTTLVPNLGMVE-TD----------------- 203 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE------EECCEE-SS-----------TTSSCCCCCEEEEE-CS-----------------
T ss_pred eeeeeCCCCCCHHHHHHHHH------cCCCcc-cc-----------CCccccCceEEEEE-eC-----------------
Confidence 48999999999999999998 555433 22 1122211 111111 00
Q ss_pred cCCcEEEEeCCCCCcc---hHHHHHHHHHHHHHhcCCCEEEEEeeCCcc--ccHHH----HHHHHhc-----cCCceEEE
Q 011010 182 ENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATVNPDLVIFVMDSSIG--QAAFD----QAQAFKQ-----SVSVGAVI 247 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~---~~~l~~el~~i~~~i~~~d~vllVvDa~~g--~~~~~----~~~~f~~-----~~~~~~vI 247 (495)
....++|+||||.... ...+.. .+...+..+|.+++|+|++.. .+... ....+.. .-.+..+|
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~---~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGH---QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHH---HHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBE
T ss_pred CCceEEEecCCCCcccccccchhHH---HHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEE
Confidence 1367999999996321 111111 122333368999999999741 22221 1122221 12335899
Q ss_pred EeCccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 248 VTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 248 lTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
+||+|...... .+..+. +.+....+...+|+..|.| ++.|++++.+.+.+
T Consensus 281 ~NK~Dl~~~~e-~~~~l~---------------~~l~~~~~v~~iSA~tg~g-i~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 281 ANKMDMPEAAE-NLEAFK---------------EKLTDDYPVFPISAVTREG-LRELLFEVANQLEN 330 (342)
T ss_dssp EECTTSTTHHH-HHHHHH---------------HHCCSCCCBCCCSSCCSST-THHHHHHHHHHHTS
T ss_pred EECccCCCCHH-HHHHHH---------------HHhhcCCCEEEEECCCCcC-HHHHHHHHHHHHhh
Confidence 99999864321 111111 1111113457799999999 99999999988753
No 162
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=2.5e-10 Score=105.36 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|... ......... .++.+...... ..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~t-----------------~~~~~~~~~~~-------------~~ 68 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD----TFTPAFVST-----------------VGIDFKVKTVY-------------RH 68 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH----TTCCCEEEE-----------------ETTTEEEEEEE-------------ET
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC----CCCcccCCC-----------------eeeEEEEEEEE-------------EC
Confidence 357999999999999999999831 111111110 01111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||..... .+ ....+..+|.+++|+|++.... .......+.. ...+..+|+||+|..
T Consensus 69 ~~~~~~~i~Dt~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYR-----TI--TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TTTEEEEEECHHHHHHCH-----HH--HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEeCCChHHHH-----HH--HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 125678999999943211 11 2233448899999999985322 1122222222 223468999999984
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+ ..+ ..+...+|+..|.| +..+++.+.+.+
T Consensus 142 ~~~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (191)
T 3dz8_A 142 EERVVPTEKG-------------QLLAEQL--GFDFFEASAKENIS-VRQAFERLVDAI 184 (191)
T ss_dssp GGCCSCHHHH-------------HHHHHHH--TCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHH-------------HHHHHHc--CCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211111111 000 001 12446789999999 999999887654
No 163
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.98 E-value=4.9e-10 Score=103.09 Aligned_cols=157 Identities=15% Similarity=0.071 Sum_probs=81.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+.. +.+.+ ..++.+...... ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 65 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC------AGRFP----DRTEA-----------TIGVDFRERAVD-------------ID 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSSCC----SSCCC-----------CCSCCEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCC-----------CcceEEEEEEEE-------------EC
Confidence 4579999999999999999998 22211 00100 001111100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||..... ..+ ....+..+|.+++|+|++.... .......+.. ...+..+|+||+|.
T Consensus 66 ~~~~~~~l~Dt~G~~~~~----~~~--~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFR----KSM--VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp TEEEEEEEEECCCSHHHH----TTT--HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred CEEEEEEEEECCCchhhh----hhh--hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 124678999999963211 011 1233448899999999985322 1112222221 12345899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccC---CCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG---MGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G---~Gdi~~L~e~i~~~~ 312 (495)
............ .+.. ....+...+|+..| .| +..+++++.+.+
T Consensus 140 ~~~~~v~~~~~~-------------~~~~-~~~~~~~~~Sa~~~~~~~~-i~~l~~~l~~~i 186 (189)
T 1z06_A 140 RSAIQVPTDLAQ-------------KFAD-THSMPLFETSAKNPNDNDH-VEAIFMTLAHKL 186 (189)
T ss_dssp GGGCCSCHHHHH-------------HHHH-HTTCCEEECCSSSGGGGSC-HHHHHHHHC---
T ss_pred cccceeCHHHHH-------------HHHH-HcCCEEEEEeCCcCCcccC-HHHHHHHHHHHH
Confidence 532111111110 0100 00113456888888 78 888888886655
No 164
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=4.3e-11 Score=124.83 Aligned_cols=101 Identities=15% Similarity=0.007 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcce---ec--cCCCC-----ChHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF---YG--SYTES-----DPVRIA 172 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~---~~--~~~~~-----dp~~ia 172 (495)
.|+|+|.|||||||++|+|. |.+ +.++. .+++|+..... +. ..... .|...
T Consensus 2 kI~ivG~pnvGKSTL~n~L~------~~~-~~~~~-----------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~- 62 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT------LVD-VEIAN-----------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNY- 62 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH------C--------------------------CCEEEEEEEEECSCSSSCCSCCCSSS-
T ss_pred EEEEECCCCCCHHHHHHHHH------CCC-CcccC-----------CCCcccCCceEEEeeccCCchHHhhhhcccccc-
Confidence 48999999999999999999 666 44444 34444322111 00 00000 00000
Q ss_pred HHHHHHHh-hcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCcc
Q 011010 173 VEGVETFK-KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSIG 227 (495)
Q Consensus 173 ~~~l~~~~-~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~g 227 (495)
.... ....++.|+||||...... ..+.+ .++...+..+|.+++|+|++.+
T Consensus 63 ----~~~~~~~~~~i~lvDtpG~~~~a~-~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 63 ----EYRNGLALIPVKMVDVAGLVPGAH-EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----CEETTEEEEEEEEEECC----------------CCCSSTTCSEEEEEEETTCC
T ss_pred ----cccCCcceEEEEEEECCCcccchh-hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 0000 0135789999999853211 11112 2222344589999999999764
No 165
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.97 E-value=3.8e-09 Score=99.05 Aligned_cols=114 Identities=20% Similarity=0.188 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+. ...|.+ + ...++......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~------~~~~----~~~~~~----------~--~~~~~~~~~~~-------------- 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL------TGQY----RDTQTS----------I--TDSSAIYKVNN-------------- 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH------HSCC----CCBCCC----------C--SCEEEEEECSS--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCc----ccccCC----------c--ceeeEEEEecC--------------
Confidence 4579999999999999999998 3220 011110 0 01111100000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc-HHHHHHHHh---------ccCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~-~~~~~~~f~---------~~~~~~~vIlTK 250 (495)
..++.+.|+||||...... .+ .......+|.+++|+|++.... .......+. ....+..+|.||
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~----~~--~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRF----QL--LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp TTCCEEEEEECCCCHHHHH----HH--HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred CCccEEEEEECCCChhHHH----HH--HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 1157899999999743221 11 1122447899999999975322 111111111 112346899999
Q ss_pred ccCCCC
Q 011010 251 MDGHAK 256 (495)
Q Consensus 251 ~D~~~~ 256 (495)
+|....
T Consensus 125 ~Dl~~~ 130 (214)
T 2fh5_B 125 QDIAMA 130 (214)
T ss_dssp TTSTTC
T ss_pred CCCCCc
Confidence 998644
No 166
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=98.96 E-value=6.1e-09 Score=106.89 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH--HcCCceEEEeccCCcchhH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAF 145 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~--~~G~kVaIVs~D~~R~~a~ 145 (495)
.++++.|.+|+||||++++||..|+ +.|+||++|++|+ ++...
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~-~~~l~ 63 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP-AHNLS 63 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCCHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCCHH
Confidence 4566669999999999999999999 8899999999999 44433
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.9e-09 Score=99.22 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc--eEEEeccCCcchhHHHHHhhhh
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK--PALVCADTFRAGAFDQLKQNAT 153 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k--VaIVs~D~~R~~a~dqL~~~a~ 153 (495)
+..+.+++.+++....... ......|+++|++||||||+++.|. +.. ..+.+. .+..+
T Consensus 26 ~~~l~~~l~~~~~~~~~~~---~~~~~~i~vvG~~g~GKSsll~~l~------~~~~~~~~~~~-----------~~~~~ 85 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGG---GSYQPSIIIAGPQNSGKTSLLTLLT------TDSVRPTVVSQ-----------EPLSA 85 (193)
T ss_dssp CHHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHH------HSSCC----------------------
T ss_pred HHHHHHHHHHHHHhhcCCC---CCCCCEEEEECCCCCCHHHHHHHHh------cCCCCcccccC-----------CCcee
Confidence 3556667777665433221 1234579999999999999999998 322 111111 00000
Q ss_pred hcCcceeccCCCCChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC-ccccHHH
Q 011010 154 KAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS-IGQAAFD 232 (495)
Q Consensus 154 ~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~-~g~~~~~ 232 (495)
..+ ..+.+.|+||||.......+...+ ...+..+|.+++|+|++ .......
T Consensus 86 ---~~~----------------------~~~~~~l~Dt~G~~~~~~~~~~~~---~~~~~~~~~~i~v~d~~~~~~~~~~ 137 (193)
T 2ged_A 86 ---ADY----------------------DGSGVTLVDFPGHVKLRYKLSDYL---KTRAKFVKGLIFMVDSTVDPKKLTT 137 (193)
T ss_dssp ----CC----------------------CCTTCSEEEETTCCBSSCCHHHHH---HHHGGGEEEEEEEEETTCCHHHHHH
T ss_pred ---eee----------------------cCCeEEEEECCCCchHHHHHHHHH---HhhcccCCEEEEEEECCCCchhHHH
Confidence 000 256789999999854432222222 22223579999999998 3222111
Q ss_pred ---HHHHHhc-------cCCceEEEEeCccCCCC
Q 011010 233 ---QAQAFKQ-------SVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 233 ---~~~~f~~-------~~~~~~vIlTK~D~~~~ 256 (495)
....+.. ...+..+|+||+|....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 138 TAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 1111110 12345899999998643
No 168
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.96 E-value=3.1e-10 Score=106.83 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE-EEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa-IVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+|+|.+||||||++++|. +.+.. -... ....+.....+.. ..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~~-----------t~~~~~~~~~~~~-~~--------------- 57 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVL------DGRFEKNYNA-----------TVGAVNHPVTFLD-DQ--------------- 57 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCT------TCSTTCEEET-----------TTTEEEEEEEEEB-TT---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCCCCCC-----------ccceeeEEEEEEe-CC---------------
Confidence 4579999999999999999998 43311 1111 0111111111111 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHH---hccCCceEEEEeCccC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAF---KQSVSVGAVIVTKMDG 253 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f---~~~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + .......+|.+++|+|++...... .....+ ...-.+..+|+||+|.
T Consensus 58 -~~~~~~~l~Dt~G~~~~~~-~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 58 -GNVIKFNVWDTAGQEKKAV-L------KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp -SCEEEEEEEEECSGGGTSC-C------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred -CcEEEEEEEecCCchhhch-H------HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 0126789999999643221 0 011233789999999998653221 111222 2222345899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
............ .... ....+...+|+..|.| ++.+++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~-------------~~~~-~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 174 (218)
T 4djt_A 130 KNRQKISKKLVM-------------EVLK-GKNYEYFEISAKTAHN-FGLPFLHLARIFT 174 (218)
T ss_dssp C----CCHHHHH-------------HHTT-TCCCEEEEEBTTTTBT-TTHHHHHHHHHHH
T ss_pred ccccccCHHHHH-------------HHHH-HcCCcEEEEecCCCCC-HHHHHHHHHHHHh
Confidence 643211111111 0000 1122456789999999 9999999988763
No 169
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=98.95 E-value=5.5e-09 Score=107.40 Aligned_cols=43 Identities=30% Similarity=0.308 Sum_probs=37.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh
Q 011010 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (495)
Q Consensus 102 ~vI~iv-G~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a 144 (495)
++|+|+ +..|+||||++.+||..|++.|++|++|++|++.+..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 467777 6779999999999999999999999999999986543
No 170
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.95 E-value=3.2e-10 Score=106.25 Aligned_cols=169 Identities=14% Similarity=0.039 Sum_probs=87.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+++|.+||||||+++.+.. ... + +.+.+ ++...........
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~------~~~--~--~~~~~---------t~~~~~~~~~~~~--------------- 74 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT------NAF--P--GEYIP---------TVFDNYSANVMVD--------------- 74 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH------SCC--C--C-CCC---------CSEEEEEEEEECC---------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh------CCC--C--CCcCC---------eecceeEEEEEEC---------------
Confidence 356799999999999999999982 111 0 01111 0000000000011
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc--CCceEEEEeCccC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~--~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++......+. ...+... ..+..+|+||+|.
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 75 -GKPVNLGLWDTAGLEDYDR-----L--RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp --CEEEEEEEEECCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred -CEEEEEEEEECCCchhhHH-----H--HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 1245677999999743221 0 11234488999999999864432221 2222221 2345899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... .................+.....-..+.+...+|+..|.| ++.+++++.+.+
T Consensus 147 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~ 203 (204)
T 4gzl_A 147 RDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 203 (204)
T ss_dssp HTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHTT
T ss_pred ccchh-hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 54321 1111111110000000001111111223456799999999 999999987653
No 171
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.3e-10 Score=105.61 Aligned_cols=157 Identities=14% Similarity=0.077 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+...... + . .++.+...... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~------~~~~~~~~~----~-------t----~~~~~~~~~~~-------------~~ 58 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFT------KNEFNMDSK----S-------T----IGVEFATRTLE-------------IE 58 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHH------HCCCCC---------------------CCSEEEEEEE-------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-------c----ccceeEEEEEE-------------EC
Confidence 3569999999999999999998 333211110 0 0 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+... ..+..+|+||+|..
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRA-----I--TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TEEEEEEEECCTTTTTTTC-----C--CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CEEEEEEEEECCCccchhh-----h--HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 1236789999999643211 0 1123347899999999986433222 12222221 23458899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
........... +.... ...+...+|+..|.| ++.+++++.+.+.
T Consensus 132 ~~~~v~~~~~~------------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 175 (223)
T 3cpj_B 132 HLRAVPTEESK------------TFAQE--NQLLFTETSALNSEN-VDKAFEELINTIY 175 (223)
T ss_dssp GGCCSCHHHHH------------HHHHH--TTCEEEECCCC-CCC-HHHHHHHHHHHHT
T ss_pred cccccCHHHHH------------HHHHH--cCCEEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 32111111110 00000 112445689999999 9999999987764
No 172
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=98.94 E-value=1.9e-08 Score=95.19 Aligned_cols=164 Identities=15% Similarity=0.226 Sum_probs=87.4
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEeccCC---------cchhHHHHHhhhhhc----Cc-ceeccCCCC
Q 011010 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTF---------RAGAFDQLKQNATKA----KI-PFYGSYTES 166 (495)
Q Consensus 102 ~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~---------R~~a~dqL~~~a~~~----~i-~~~~~~~~~ 166 (495)
++|+|++. +|+||||++.+||.+|+++|++|+++++... ..+..+.+..+.... .+ ++.. ....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTF-AEPT 80 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEE-SSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEe-CCCC
Confidence 46888875 6999999999999999999999999764211 111222232222110 01 1111 0011
Q ss_pred Ch------------HHHHHHHHHHHhhcCCcEEEEeCCCCCcch--HHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 167 DP------------VRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 167 dp------------~~ia~~~l~~~~~~~~dvviIDTaG~~~~~--~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
.| .....+.++.+. +.||+|||||||..... ..+ ....+.... .+.+++|+++..+. +.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~--~~~~l~~~~--~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 81 SPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTF--TFADWVTQE--QLPVILVVGVKLGCINHA 155 (224)
T ss_dssp CHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTE--EHHHHHHHH--TCCEEEEEECSTTHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcch--hHHHHHHHh--CCCEEEEecCCCCcHHHH
Confidence 11 223344555553 58999999998754311 000 001122222 23578888875421 22
Q ss_pred HHHHHHHh-ccCCceEEEEeCccCCCCc-cchhHHH-HhcCCCe
Q 011010 231 FDQAQAFK-QSVSVGAVIVTKMDGHAKG-GGALSAV-AATKSPV 271 (495)
Q Consensus 231 ~~~~~~f~-~~~~~~~vIlTK~D~~~~~-g~~ls~~-~~~~~PI 271 (495)
....+.+. ...++.++|+|++|..... ...+..+ ...+.|+
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~v 199 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPL 199 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCE
Confidence 22333333 3456789999999875332 2223333 3356665
No 173
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.94 E-value=6.4e-10 Score=105.14 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++++.. |.....+.. ....+.....+.. .
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~-----~~~~~~~~~-----------t~~~~~~~~~~~~--~---------------- 60 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA-----------TLGVEVHPLVFHT--N---------------- 60 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHH-----HHHTCEEET-----------TTTEEEEEEEEEE--T----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHc-----CCCCCCCCC-----------ccceeEEEEEEEE--C----------------
Confidence 45799999999999999999542 111111111 1111111111110 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+.. ..+ ..+|+||+|..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~-~------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 132 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGG-L------RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIK 132 (221)
T ss_dssp TEEEEEEEEEECSGGGTSC-C------CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSS
T ss_pred CEEEEEEEEeCCChHHHhH-H------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccc
Confidence 1356789999999632211 0 11223378999999999864322 112222222 334 58999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+.... . . ..+.. ....+...+|+..|.| +..+++++.+.+
T Consensus 133 ~~~~~~-~-~-------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~~~l 173 (221)
T 3gj0_A 133 DRKVKA-K-S-------------IVFHR-KKNLQYYDISAKSNYN-FEKPFLWLARKL 173 (221)
T ss_dssp SCSSCG-G-G-------------CCHHH-HHTCEEEECBGGGTBT-TTHHHHHHHHHH
T ss_pred cccccH-H-H-------------HHHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 432110 0 0 00100 0112446689999999 999999988765
No 174
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=6.3e-10 Score=104.25 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..+.+ +. +..+...... .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~~--------------~ 69 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS------KDEFP----EVYVP---------TV--FENYVADIEV--------------D 69 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSCC----------------------CCEEEEEEEE--------------T
T ss_pred CcEEEEECcCCCCHHHHHHHHh------cCCCC----CcCCC---------cc--cceEEEEEEE--------------C
Confidence 4579999999999999999998 32221 01111 00 0011000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ..+ ..+|+||+|.
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDR-----L--RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDL 141 (207)
T ss_dssp TEEEEEEEEECTTCTTCTT-----T--GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----H--HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence 1246789999999743221 0 1123447899999999875432111 1222222 334 5899999998
Q ss_pred CCCccchhHHHHhcC-CCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~-~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... ....+.... ..+. ...++.+..-....+...+|+..|.| ++.|++++.+.+
T Consensus 142 ~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~i 198 (207)
T 2fv8_A 142 RSDEH-VRTELARMKQEPVR-TDDGRAMAVRIQAYDYLECSAKTKEG-VREVFETATRAA 198 (207)
T ss_dssp GGCHH-HHHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hcccc-chhhhhhcccCCCC-HHHHHHHHHhcCCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 54321 111111100 0000 00000110001112446789999999 999999987764
No 175
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.93 E-value=1.5e-09 Score=98.87 Aligned_cols=155 Identities=13% Similarity=0.049 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|.. ... .+.+.+ +. +..+...... .
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~------~~~----~~~~~~---------t~--~~~~~~~~~~--------------~ 62 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ------KIF----VDDYDP---------TI--EDSYLKHTEI--------------D 62 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------SCC----CSCCCT---------TC--CEEEEEEEEE--------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCC----CCCCCC---------Cc--cceeEEEEEe--------------C
Confidence 45799999999999999999982 211 001111 00 0111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHH---h-ccCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAF---K-QSVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f---~-~~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||........ . ..+..+|.+++|+|++.... .......+ . ....+..+|+||+|.
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~----~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMR----E---QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSH----H---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHH----H---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 123456779999964322111 1 12226799999999986422 11111222 1 122235899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhc-cCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l-~G~Gdi~~L~e~i~~~~ 312 (495)
............ +....+. .+...+|+. .|.| ++.+++.+.+.+
T Consensus 136 ~~~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~~-v~~l~~~l~~~i 180 (183)
T 3kkq_A 136 MHLRKVTRDQGK------------EMATKYN--IPYIETSAKDPPLN-VDKTFHDLVRVI 180 (183)
T ss_dssp STTCCSCHHHHH------------HHHHHHT--CCEEEEBCSSSCBS-HHHHHHHHHHHH
T ss_pred hhccCcCHHHHH------------HHHHHhC--CeEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 542111111110 0001111 234568888 8999 999999887654
No 176
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.93 E-value=1.3e-08 Score=103.35 Aligned_cols=42 Identities=29% Similarity=0.223 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a 144 (495)
.++++.|.+|+||||++.+||..+++.|++|++|++|+. +..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l 61 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNL 61 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCH
Confidence 456677999999999999999999999999999999986 443
No 177
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=1.2e-09 Score=102.50 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|.. .+.. . .+.+ ..+++++..... ..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~------~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ------GLFP---P-GQGA-----------TIGVDFMIKTVE-------------IN 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SSCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHh------CCCC---C-CCCC-----------ccceeEEEEEEE-------------EC
Confidence 35799999999999999999983 2110 0 0000 011111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHh---ccCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~---~~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++..... ......+. ....+..+|.||+|..
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFRS-----I--TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp TEEEEEEEEEECCSGGGHH-----H--HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----H--HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 1246789999999643211 1 22344588999999999754321 11222222 1223458899999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.......... +.+.. ....+...+|+..|.| ++.+++++.+.+
T Consensus 145 ~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~g~g-v~~l~~~l~~~i 187 (201)
T 2ew1_A 145 ERREVSQQRA-------------EEFSE-AQDMYYLETSAKESDN-VEKLFLDLACRL 187 (201)
T ss_dssp GGCSSCHHHH-------------HHHHH-HHTCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccCHHHH-------------HHHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211111111 00000 0112446689999999 999999887655
No 178
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.93 E-value=7.1e-10 Score=100.61 Aligned_cols=165 Identities=15% Similarity=0.087 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.+. +.+. .+.+.+ +..... ..... . .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~------~~~~----~~~~~~---------t~~~~~--~~~~~-~-------------~ 52 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT------SNTF----PTDYVP---------TVFDNF--SANVV-V-------------N 52 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH------HSCC----C-------------------C--BCCCC----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCC---------eeeeeE--EEEEE-E-------------C
Confidence 4569999999999999999998 2221 011111 110000 00000 0 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ..+ ..+|+||+|.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 124 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNR-----L--RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDL 124 (182)
T ss_dssp -----CEEECCCC-CTTTT-----T--GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred CEEEEEEEEECCCChhhhh-----h--HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhh
Confidence 1245677999999643221 0 1123447899999999975432111 1222222 234 5899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... ... .....++.. ..++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~-~~~-~~~~~~v~~-~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (182)
T 3bwd_D 125 RDDKQF-FID-HPGAVPITT-VQGEELKKLIGAPAYIECSSKSQEN-VKGVFDAAIRVV 179 (182)
T ss_dssp HTCHHH-HHH-C--CCCCCH-HHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hcCccc-ccc-cccCCCCCH-HHHHHHHHHcCCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 533210 000 000000000 0001111111122456799999999 999999987654
No 179
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.93 E-value=3.1e-10 Score=103.28 Aligned_cols=155 Identities=13% Similarity=0.058 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+. + ..+.+ +. +..+...... .
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~------~~~~--~--~~~~~---------t~--~~~~~~~~~~--------------~ 50 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV------EGQF--V--DSYDP---------TI--ENTFTKLITV--------------N 50 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSC--C--SCCCT---------TC--CEEEEEEEEE--------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCC--C--CCCCC---------Cc--cccEEEEEEE--------------C
Confidence 4579999999999999999998 2221 0 11111 11 1111100000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+.. ...+..+|+||+|.
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSI-----F--PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp TEEEEEEEEECCCCCTTCC-----C--CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred CEEEEEEEEeCCCchhhhH-----H--HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1246778999999643211 0 1122337899999999985332211 1112211 12245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
............ +....+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~------------~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 167 (181)
T 3t5g_A 124 HMERVISYEEGK------------ALAESW--NAAFLESSAKENQT-AVDVFRRIILEA 167 (181)
T ss_dssp TTTCCSCHHHHH------------HHHHHT--TCEEEECCTTSHHH-HHHHHHHHHHHH
T ss_pred hhcceecHHHHH------------HHHHHh--CCcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 533211111110 000011 11345689999999 999999987765
No 180
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.93 E-value=3.2e-09 Score=113.30 Aligned_cols=154 Identities=14% Similarity=0.033 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||++++|. +.+. +.. .+ | .+..+.... .
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~------~~~~--~~~---~~----------T-~~~~~~~~~-----------------~ 363 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLK------LGQS--VTT---IP----------T-VGFNVETVT-----------------Y 363 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSSC--CCC---CC----------C-SSEEEEEEE-----------------S
T ss_pred eeEEEEcCCCCCHHHHHHHHh------cCCC--CCc---CC----------c-cceeEEEEE-----------------e
Confidence 579999999999999999998 3331 111 01 1 111111100 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc----cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~----~~~~~~vIlTK~D~~ 254 (495)
.++.+.|+||||....... ....+..+|.+++|+|++....... ....+.. .-.+..+|+||+|..
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~-------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPL-------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp SSCEEEEEEECCCGGGSGG-------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred CCEEEEEEECCCcHHHHHH-------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 3678999999996433211 1234458999999999986543222 2222211 123468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.... ...+....+.+. . .....+.+.+|+..|.| ++.|++++.+.+.
T Consensus 437 ~~~~-~~~~~~~~~~~~--------~--~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~~ 483 (497)
T 3lvq_E 437 DAMK-PHEIQEKLGLTR--------I--RDRNWYVQPSCATSGDG-LYEGLTWLTSNYK 483 (497)
T ss_dssp SCCC-HHHHHHHTTCTT--------C--CSSCEEEEECBTTTTBT-HHHHHHHHHHHCC
T ss_pred cCCC-HHHHHHHhchhh--------h--hcCCeEEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 4321 112222122110 0 01122457799999999 9999999999885
No 181
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.93 E-value=6.8e-10 Score=104.80 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..+.+ +. ...+..... ..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~--------------~~ 78 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFA------DGAFP----ESYTP---------TV--FERYMVNLQ--------------VK 78 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------C-----------CC---------CC--CEEEEEEEE--------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC----CCCCC---------cc--ceeEEEEEE--------------EC
Confidence 4579999999999999999998 43321 01111 00 000000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHh---ccCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFK---QSVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~---~~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||..... .+ ....+..+|.+++|+|++........ ...+. ...+ ..+|+||+|.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~-----~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 150 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYD-----RL--RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDL 150 (214)
T ss_dssp TEEEEEEEEEC----------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhh-----HH--HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 124578999999964221 11 11223478999999999854322211 12222 2334 5899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
..... .............-...++.+..-..+.+...+|+..|.| ++.+++.+.+.+
T Consensus 151 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~~ 207 (214)
T 2j1l_A 151 RKDKS-LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN-VHAVFQEAAEVA 207 (214)
T ss_dssp GSCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred hccch-hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 64321 1111111000000000001111011123556799999999 999999987764
No 182
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=101.09 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+ ..+ .|.+ ++...........
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~------~~~--~~~--~~~~---------t~~~~~~~~~~~~---------------- 64 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYT------TNG--YPT--EYIP---------TAFDNFSAVVSVD---------------- 64 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------C------------C---------CSSEEEEEEEEET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCC--CCC--CCCC---------cccceeEEEEEEC----------------
Confidence 4579999999999999999998 433 111 1111 1111110000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++......+ ....+.. ..+ ..+|.||+|.
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~-~------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDK-L------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp TEEEEEEEEECCCSTTCSS-S------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCHHHHH-H------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 1235677999999743221 0 1123348899999999985432222 1122222 334 5899999998
Q ss_pred CCCccchhHHHHhc-CCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~-~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...... ....... ...+. ...++.+.....+.+...+|+..|.| ++.+++++.+.+
T Consensus 137 ~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 193 (201)
T 2q3h_A 137 REDVKV-LIELDKCKEKPVP-EEAAKLLAEEIKAASYIECSALTQKN-LKEVFDAAIVAG 193 (201)
T ss_dssp GGCHHH-HHHHHTTTCCCCC-HHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hhchhh-hhhhcccccccCC-HHHHHHHHHhcCCcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 542110 0000000 00000 00001111111122456789999999 999999987765
No 183
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.93 E-value=1.6e-09 Score=100.24 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..+.+ +. +..+..... ..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~--------------~~ 72 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFL------TKRFI----WEYDP---------TL--ESTYRHQAT--------------ID 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------HSCCC----SCCCT---------TC--CEEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC----cccCC---------CC--CceEEEEEE--------------EC
Confidence 4579999999999999999998 33211 11111 00 001100000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHH---HHHHHhc-cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFD---QAQAFKQ-SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~---~~~~f~~-~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||... . .+. ...+..+|.+++|+|++.... ... .+..+.. ...+..+|+||+|.
T Consensus 73 ~~~~~~~l~Dt~G~~~-~-~~~------~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 73 DEVVSMEILDTAGQED-T-IQR------EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp TEEEEEEEEECCCCCC-C-HHH------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred CEEEEEEEEECCCCCc-c-cch------hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 1246789999999865 1 111 112226799999999975322 111 1222221 12235899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCC-CCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~-Gdi~~L~e~i~~~~ 312 (495)
........... +.+ ..+ ..+...+|+..|. | +..+++++.+.+
T Consensus 145 ~~~~~v~~~~~-------------~~~~~~~--~~~~~~~Sa~~g~~g-i~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSRQVSTEEG-------------EKLATEL--ACAFYECSACTGEGN-ITEIFYELCREV 189 (196)
T ss_dssp GGGCCSCHHHH-------------HHHHHHH--TSEEEECCTTTCTTC-HHHHHHHHHHHH
T ss_pred ccccccCHHHH-------------HHHHHHh--CCeEEEECCCcCCcC-HHHHHHHHHHHH
Confidence 54211100100 000 011 1244568999999 7 999999887654
No 184
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.92 E-value=8e-09 Score=112.73 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=41.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL 148 (495)
.++++++.|.+|+||||++.+||.+++++|++|++|++|+ ++...+.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l~~~l 54 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNVGQVF 54 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHh
Confidence 3567888899999999999999999999999999999998 55544444
No 185
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.92 E-value=2.3e-10 Score=106.69 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..+.+ +. +..+...... .
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~~--------------~ 68 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFV------EGEFS----EGYDP---------TV--ENTYSKIVTL--------------G 68 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SCCCC---------CS--EEEEEEEEC----------------
T ss_pred cEEEEEECCCCcCHHHHHHHHH------hCCCC----CCCCC---------cc--ceEEEEEEEE--------------C
Confidence 4579999999999999999998 33221 11111 00 0111110010 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhcc----CCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~~----~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||....... ....+..+|.+++|+|++..... ......+... ..+..+|+||+|.
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSIL-------PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp --CEEEEEEEECCCCTTCCC-------CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred CEEEEEEEEECCCccchHHH-------HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 13577899999996432210 11233478999999999854322 1222223221 1245899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +.+.. ....+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~v~~~~~-------------~~~~~-~~~~~~~~~Sa~~~~~-v~~l~~~l~~~i 185 (201)
T 3oes_A 142 SPEREVQAVEG-------------KKLAE-SWGATFMESSARENQL-TQGIFTKVIQEI 185 (201)
T ss_dssp GGGCCSCHHHH-------------HHHHH-HHTCEEEECCTTCHHH-HHHHHHHHHHHH
T ss_pred ccccccCHHHH-------------HHHHH-HhCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 53321111100 00000 0112446689999999 999999987765
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.92 E-value=8.4e-09 Score=114.79 Aligned_cols=129 Identities=19% Similarity=0.125 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH--HhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL--KQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL--~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
+...|+|+|.+|+|||||+++|..+-.... +..-|+.. .....+... ....+.......
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~-~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~----------------- 69 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIH-KIGETHEG-ASQMDWMEQEQDRGITITSAATT----------------- 69 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEE-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC-ceecccchhhhhcCceEeeeeEE-----------------
Confidence 356899999999999999999985321100 00111110 000000000 011111100000
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhccCCceEEEEeCccCCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+...++.+.|+||||........ ...+..+|.+++|+|++.+..... ..........+..+|+||+|...
T Consensus 70 -~~~~~~~i~liDTPG~~df~~~~-------~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 70 -AAWEGHRVNIIDTPGHVDFTVEV-------ERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp -EEETTEEEEEECCCCCSSCCHHH-------HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred -EEECCeeEEEEECcCCcchHHHH-------HHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 01136789999999986543322 222235799999999987643322 22222222223589999999864
No 187
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.92 E-value=4e-09 Score=101.39 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|++||||||+++.|+ |.++.. +. .+ ...++.........
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~------g~~~~~-~~---~~------~~~~t~~~~~~~~~------------------ 74 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL------GRKVFH-SG---TA------AKSITKKCEKRSSS------------------ 74 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TSCCSC-C----------------CCSCEEEEEE------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHc------CCCcCc-cC---CC------CCceeeeEEEEEEE------------------
Confidence 4679999999999999999999 655521 11 00 00111111110010
Q ss_pred hcCCcEEEEeCCCCCcch---HHHHHHHHHHH-HHhcCCCEEEEEeeCCcccc-HHHHHHHH----hc-cCCceEEEEeC
Q 011010 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVS-EATVNPDLVIFVMDSSIGQA-AFDQAQAF----KQ-SVSVGAVIVTK 250 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~---~~l~~el~~i~-~~i~~~d~vllVvDa~~g~~-~~~~~~~f----~~-~~~~~~vIlTK 250 (495)
..+..+.|+||||+.... ....+++.... .....+|.+++|+|++.... ....+..+ .. ...+..+|+||
T Consensus 75 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 125678999999975432 23334443332 33447899999999864322 22222222 22 12346899999
Q ss_pred ccCCC
Q 011010 251 MDGHA 255 (495)
Q Consensus 251 ~D~~~ 255 (495)
+|...
T Consensus 155 ~D~~~ 159 (239)
T 3lxx_A 155 KDDLG 159 (239)
T ss_dssp GGGC-
T ss_pred CccCC
Confidence 99753
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.92 E-value=2e-09 Score=105.77 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+|+||||++|.|. |.++..++. ...++.....+.. .
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~~-----------~~~~t~~~~~~~~------------------~ 83 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII------GERVVSISP-----------FQSEGPRPVMVSR------------------S 83 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------TSCCSCCCS-----------SSCCCSSCEEEEE------------------E
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CCCcceeeEEEEE------------------e
Confidence 4579999999999999999999 766543333 1111211111111 0
Q ss_pred hcCCcEEEEeCCCCCcch---HHHHHHHHHHHHHhcCCCEEEEEeeCCc-ccc--HHHHHHHHhccC-----CceEEEEe
Q 011010 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSEATVNPDLVIFVMDSSI-GQA--AFDQAQAFKQSV-----SVGAVIVT 249 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~---~~l~~el~~i~~~i~~~d~vllVvDa~~-g~~--~~~~~~~f~~~~-----~~~~vIlT 249 (495)
..++.+.|+||||..... ....+.+...... ..+|.++||+|... ... .......+.+.. .+..+|+|
T Consensus 84 ~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~-~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 84 RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD-KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT-CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc-CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 135689999999984332 3333333222111 25899999976542 122 222333333221 24689999
Q ss_pred CccCCCC
Q 011010 250 KMDGHAK 256 (495)
Q Consensus 250 K~D~~~~ 256 (495)
|+|....
T Consensus 163 K~Dl~~~ 169 (270)
T 1h65_A 163 HAQFSPP 169 (270)
T ss_dssp CCSCCCG
T ss_pred CcccCCc
Confidence 9998643
No 189
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.91 E-value=7.8e-10 Score=102.13 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+. ...+.+ +. +..+..... ..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~------~~~~----~~~~~~---------t~--~~~~~~~~~--------------~~ 67 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFS------KGEI----PTAYVP---------TV--FENFSHVMK--------------YK 67 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC----CSSCCC---------CS--EEEEEEEEE--------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCC----CCccCC---------ee--eeeeEEEEE--------------EC
Confidence 4579999999999999999998 3321 011111 00 011000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+... ..+..+|.||+|..
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDR-----L--RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TEEEEEEEEEECCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred CEEEEEEEEECCCcHHHHH-----H--hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 1246679999999643221 0 1123448899999999986433222 11122221 23468999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... ++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 141 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (194)
T 3reg_A 141 KDGSDDVTKQE-----------GDDLCQKLGCVAYIEASSVAKIG-LNEVFEKSVDCI 186 (194)
T ss_dssp CTTTTCCCHHH-----------HHHHHHHHTCSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cCCCCcccHHH-----------HHHHHHhcCCCEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 42111100000 00110001122245689999999 999999987765
No 190
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.91 E-value=7.7e-10 Score=100.76 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=65.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. . .+ .+. .+..+...... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~------~~~~~-~---~~--------~~t---~~~~~~~~~~~-------------~~ 53 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS------EDAFN-S---TF--------IST---IGIDFKIRTIE-------------LD 53 (183)
T ss_dssp EEEEEEECCCCC--------------------------CH--------HHH---HCEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC-C---CC--------CCc---ccceeEEEEEE-------------EC
Confidence 3569999999999999999998 32211 0 00 110 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhc---cCCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ...+..+|.||+|..
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 54 GKRIKLQIWDTAGQERFRT-----I--TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp TEEEEEEEEEC----------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred CEEEEEEEEcCCCChhhhh-----h--HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 1236789999999632111 1 1123448899999999986432211 1222222 123458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +....+. .+...+|+..|.| ++.+++.+.+.+
T Consensus 127 ~~~~v~~~~~~------------~~~~~~~--~~~~~~Sa~~~~~-i~~l~~~l~~~i 169 (183)
T 2fu5_C 127 DKRQVSKERGE------------KLALDYG--IKFMETSAKANIN-VENAFFTLARDI 169 (183)
T ss_dssp SCCCSCHHHHH------------HHHHHHT--CEEEECCC---CC-HHHHHHHHHHHH
T ss_pred ccCcCCHHHHH------------HHHHHcC--CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 43211111110 0000111 2446789999999 999999987765
No 191
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.91 E-value=5.3e-10 Score=101.66 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.|.. .+. ...+.+ +............ .
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~------~~~----~~~~~~---------t~~~~~~~~~~~~----------------~ 50 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT------NAF----PGEYIP---------TVFDNYSANVMVD----------------G 50 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH------SSC----CSSCCC---------CSCCEEEEEEEET----------------T
T ss_pred EEEEEECCCCCCHHHHHHHHHc------CCC----CCCcCC---------cccceeEEEEEEC----------------C
Confidence 4699999999999999999972 211 011111 0000000000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~~ 254 (495)
..+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ..+ ..+|+||+|..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDR-----L--RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEEECCCCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCCHhHHH-----H--HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 246678999999743221 1 1123447899999999986432211 1222222 334 58999999985
Q ss_pred CCccchhHHHHhcC-CCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g~~ls~~~~~~-~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.... ......... ..+. ...++.+..-..+.+...+|+..|.| ++.|++.+.+.+.
T Consensus 123 ~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 179 (186)
T 1mh1_A 123 DDKD-TIEKLKEKKLTPIT-YPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAVL 179 (186)
T ss_dssp TCHH-HHHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHHS
T ss_pred ccch-hhhhhcccccccCC-HHHHHHHHHhcCCcEEEEecCCCccC-HHHHHHHHHHHHh
Confidence 4321 111111100 0000 00000110001123557799999999 9999999988764
No 192
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.91 E-value=3.3e-09 Score=113.25 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=41.4
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHh-ccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~~~~vIlTK~ 251 (495)
.++.+.|+||||..... ......+..+|.+++|+|++.+. .....+.... ...+...+|+||+
T Consensus 109 ~~~~~~iiDTPG~~~f~-------~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFV-------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp SSCEEEEECCCCCGGGH-------HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CCceEEEEECCCcHHHH-------HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 36789999999984322 12233444899999999998752 1111111111 1234468899999
Q ss_pred cCCC
Q 011010 252 DGHA 255 (495)
Q Consensus 252 D~~~ 255 (495)
|...
T Consensus 182 Dl~~ 185 (483)
T 3p26_A 182 DNVD 185 (483)
T ss_dssp GGGT
T ss_pred Cccc
Confidence 9864
No 193
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.90 E-value=2.4e-09 Score=114.31 Aligned_cols=163 Identities=21% Similarity=0.244 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+|+|||||+++|. +..... ..|.+.. + -.+..|. .+.+.. +.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~------~~~~~~-~~d~~~~---e-~~~GiTi-~~~~~~-----------------~~ 69 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLT------EIASTS-AHDKLPE---S-QKRGITI-DIGFSA-----------------FK 69 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TTC--------------------------CCCE-----------------EE
T ss_pred CCEEEEECCCCChHHHHHHHHH------CCCccc-ccccccc---c-ccCccEE-ecceEE-----------------EE
Confidence 4579999999999999999998 543110 0111100 0 0011111 010000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHh-ccCCceEEEEeCccCCCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~-~~~~~~~vIlTK~D~~~~~ 257 (495)
..++.+.|+||||.. .+. ......+..+|.+++|+|++.+.. ..+.+.... ..++. .+|+||+|.....
T Consensus 70 ~~~~~i~iiDtPGh~----~~~---~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~ 141 (482)
T 1wb1_A 70 LENYRITLVDAPGHA----DLI---RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTE 141 (482)
T ss_dssp ETTEEEEECCCSSHH----HHH---HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHH
T ss_pred ECCEEEEEEECCChH----HHH---HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccch
Confidence 125789999999962 222 223444558999999999986432 222222222 23555 8999999986421
Q ss_pred cchhHHHHh-cCCCeEEeccCCCcccc--cccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 GGALSAVAA-TKSPVIFIGTGEHMDEF--EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 g~~ls~~~~-~~~PI~fi~~Ge~i~~l--~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.+..... .. +.+... ....|..++|++.|.| ++.|++.+.+.+
T Consensus 142 --~~~~~~~~l~---------~~l~~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~i 187 (482)
T 1wb1_A 142 --EIKRTEMIMK---------SILQSTHNLKNSSIIPISAKTGFG-VDELKNLIITTL 187 (482)
T ss_dssp --HHHHHHHHHH---------HHHHHSSSGGGCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred --hHHHHHHHHH---------HHHhhhcccccceEEEEECcCCCC-HHHHHHHHHHhh
Confidence 1111100 00 000000 0123567899999999 999999998865
No 194
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=99.94 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|+ +.+... +. .+.+ ..+++..... ..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~~-~~-----------~~~~---~~~~~~~~~~-------------~~ 68 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG------GLQGDS-AH-----------EPEN---PEDTYERRIM-------------VD 68 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC------CEECCG-GG-----------TTTS---CTTEEEEEEE-------------ET
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hccCCc-cC-----------CCCc---ccceEEEEEE-------------EC
Confidence 3579999999999999999997 422110 00 0000 1111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc---HHHHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~---~~~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||.......+.. .....+|.+++|+|.+.... .......+.. ...+..+|.||+|.
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRD------HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHH------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred CEEEEEEEEecCCCccchhhhHH------HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 12467788999998543321211 11226799999999975322 1122222221 12245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +.+ ..+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 143 ~~~~~v~~~~~-------------~~~a~~~--~~~~~e~Sa~~~~~-v~~lf~~l~~~i 186 (195)
T 3cbq_A 143 ARSREVSLEEG-------------RHLAGTL--SCKHIETSAALHHN-TRELFEGAVRQI 186 (195)
T ss_dssp TTTCCSCHHHH-------------HHHHHHT--TCEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCcCHHHH-------------HHHHHHh--CCEEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 54321111111 111 011 12346789999999 999999987765
No 195
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.90 E-value=3e-09 Score=107.97 Aligned_cols=155 Identities=18% Similarity=0.093 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. +. + | | .++.+....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~------~~~~~--~~--~-p----------T-~~~~~~~~~----------------- 205 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK------LGEIV--TT--I-P----------T-IGFNVETVE----------------- 205 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC------SSCCE--EE--E-E----------E-TTEEEEEEE-----------------
T ss_pred cceEEEECCCCccHHHHHHHHh------CCCCC--Cc--c-c----------c-cceEEEEEe-----------------
Confidence 3479999999999999999997 54421 11 0 0 1 111111110
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHH-hcc---CCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAF-KQS---VSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f-~~~---~~~~~vIlTK~D~ 253 (495)
..++.+.|+||||...... + ....+..+|.+++|+|++....... ....+ ... ..+..+|+||+|.
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRP-----L--WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp ETTEEEEEEECC-----CC-----S--HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cCcEEEEEEECCCCHhHHH-----H--HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence 1357889999999532211 1 1223347899999999975332222 12222 111 2346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..... ...+....+.. ... ....+.+.+|+..|.| ++.|++.+.+.+.
T Consensus 279 ~~~~~-~~~i~~~~~~~--------~~~--~~~~~~~~vSAk~g~g-i~el~~~l~~~l~ 326 (329)
T 3o47_A 279 PNAMN-AAEITDKLGLH--------SLR--HRNWYIQATCATSGDG-LYEGLDWLSNQLR 326 (329)
T ss_dssp TTCCC-HHHHHHHHTCT--------TCC--SSCEEEEECBTTTTBT-HHHHHHHHHHHHT
T ss_pred CcccC-HHHHHHHhchh--------hhh--cCCCEEEEEECCCCcC-HHHHHHHHHHHHH
Confidence 54321 11222211110 000 0112456789999999 9999999987663
No 196
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.89 E-value=1.5e-09 Score=98.44 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+.. + +.+. . ....... +. ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~------~~~~~----~-~~~t------~-~~~~~~~-~~-~~---------------- 50 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL------TGSYQ----V-LEKT------E-SEQYKKE-ML-VD---------------- 50 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH------HSCCC----C-CSSC------S-SSEEEEE-EE-ET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC----C-cCCC------c-ceeEEEE-EE-EC----------------
Confidence 4569999999999999999998 32221 0 1110 0 0000000 00 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH------HHHHhc---cCCceEEEEeCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ------AQAFKQ---SVSVGAVIVTKM 251 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~------~~~f~~---~~~~~~vIlTK~ 251 (495)
...+.+.|+||||.... .....+|.+++|+|++........ ...+.. .-.+..+|.||+
T Consensus 51 ~~~~~l~i~Dt~G~~~~------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA------------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118 (178)
T ss_dssp TEEEEEEEEECSSSCCH------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred CEEEEEEEEECCCCchh------------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 12456889999997541 112257999999999854322111 222222 123468999999
Q ss_pred cCCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 252 DGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
|.........+... ++.+ ..+ ...+...+|+..|.| ++.+++.+.+.+
T Consensus 119 Dl~~~~~~~v~~~~-----------~~~~~~~~-~~~~~~~~Sa~~~~~-i~~lf~~l~~~~ 167 (178)
T 2iwr_A 119 RISASSPRVVGDAR-----------ARALXADM-KRCSYYETXATYGLN-VDRVFQEVAQKV 167 (178)
T ss_dssp TCBTTBCCCSCHHH-----------HHHHHHHH-SSEEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccccccCcCCHHH-----------HHHHHHhh-cCCeEEEEeccccCC-HHHHHHHHHHHH
Confidence 98321100000000 0000 001 112446789999999 999999887654
No 197
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.89 E-value=1.2e-09 Score=100.75 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|.+||||||+++.|. +.+.. +.|.+ +. +..+..... .
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~------~~~~~----~~~~~---------t~--~~~~~~~~~--------------~ 64 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL------TKRFI----SEYDP---------NL--EDTYSSEET--------------V 64 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCC----SCCCT---------TC--CEEEEEEEE--------------E
T ss_pred ceEEEEEECCCCCcHHHHHHHHH------hCCCC----cccCC---------Cc--cceeeEEEE--------------E
Confidence 34679999999999999999998 33210 11111 11 111100000 0
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHh-------ccCCceEEEEe
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFK-------QSVSVGAVIVT 249 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~-------~~~~~~~vIlT 249 (495)
....+.+.|+||||...... + ...+..+|.+++|+|.+....... ....+. ...+ ..+|.|
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-----~---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~n 135 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-----C---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGN 135 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-----T---HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEE
T ss_pred CCEEEEEEEEECCCCCcchh-----H---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEE
Confidence 01246788999999643221 1 123347899999999985332111 112221 1233 589999
Q ss_pred CccCCCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhh-ccCCCCcHHHHHHHHHhC
Q 011010 250 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSR-LLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 250 K~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~-l~G~Gdi~~L~e~i~~~~ 312 (495)
|+|............. +....+. .+...+|+ ..|.| ++.+++.+.+.+
T Consensus 136 K~Dl~~~~~v~~~~~~------------~~~~~~~--~~~~e~Sa~~~g~g-v~~lf~~l~~~i 184 (187)
T 3c5c_A 136 KLDMAQYRQVTKAEGV------------ALAGRFG--CLFFEVSACLDFEH-VQHVFHEAVREA 184 (187)
T ss_dssp CGGGGGGCSSCHHHHH------------HHHHHHT--CEEEECCSSSCSHH-HHHHHHHHHHHH
T ss_pred CcchhhcCccCHHHHH------------HHHHHcC--CcEEEEeecCcccc-HHHHHHHHHHHH
Confidence 9998432111000000 0001111 24456898 88999 999999887653
No 198
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.89 E-value=1.6e-09 Score=101.02 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..|.+. . +..+..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t---------~--~~~~~~~~~--------------~~ 69 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS------KDQFP----EVYVPT---------V--FENYIADIE--------------VD 69 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC----SSCCCS---------S--CCCCEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcCC----cccCCc---------c--cceEEEEEE--------------EC
Confidence 3579999999999999999998 32211 111110 0 000000000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ..+ ..+|+||+|.
T Consensus 70 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYDR-----L--RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 141 (201)
T ss_dssp TEEEEEEEECCCCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhHHH-----H--HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence 1246789999999643221 1 1123448899999999875432111 1222222 334 5899999998
Q ss_pred CCCccchhHHHHhcC-CCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 254 HAKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~-~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..... ....+.... ..+.. ..++.+..-..+.+...+|+..|.| ++.|++.+.+.
T Consensus 142 ~~~~~-~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~ 197 (201)
T 2gco_A 142 RQDEH-TRRELAKMKQEPVRS-EEGRDMANRISAFGYLECSAKTKEG-VREVFEMATRA 197 (201)
T ss_dssp TTCHH-HHHHHHTTTCCCCCH-HHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred hcCcc-chhhhcccccCcCCH-HHHHHHHHhCCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 65421 111111000 00000 0000010001122456789999999 99999988764
No 199
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.89 E-value=2.8e-09 Score=111.15 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch-hHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~-a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...|+++|.+|+|||||+++|...+.+.|... .|... ..+.+... ...++.+..... .+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~------~~~~~~~~d~~~~e-~~~GiTi~~~~~-------------~~ 70 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EVKDYGDIDKAPEE-RARGITINTAHV-------------EY 70 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS------CCCCHHHHSCSHHH-HHHTCCCSCEEE-------------EE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc------cccchhhccCCHHH-HHcCCCEEeeee-------------Ee
Confidence 35799999999999999999998776665410 01000 01111000 011111100000 00
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
...++.+.|+||||..... . .....+..+|.+++|+|++.+... ......... .++...+|+||+|...
T Consensus 71 ~~~~~~~~iiDtpG~~~f~----~---~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 71 ETAKRHYSHVDCPGHADYI----K---NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp ECSSCEEEEEECCCSGGGH----H---HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred ccCCeEEEEEECCChHHHH----H---HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 1136789999999975422 1 123334489999999999866322 222222222 2342478999999864
No 200
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.88 E-value=9.7e-09 Score=105.23 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=50.2
Q ss_pred CCcEEEEeCCCCCcc-----hHHHHHHHHH-HHHHhcCCCEEEEEeeCCcc----ccHHHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQ-VSEATVNPDLVIFVMDSSIG----QAAFDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~-----~~~l~~el~~-i~~~i~~~d~vllVvDa~~g----~~~~~~~~~f~~~~~~~~vIlTK~D 252 (495)
..++.||||||.... .......+.. +...+..||.+++|+|++.. .+....+..+.....++.+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 467999999997543 1222333322 33455689999999987531 2234444555443345799999999
Q ss_pred CCCCccchhHHH
Q 011010 253 GHAKGGGALSAV 264 (495)
Q Consensus 253 ~~~~~g~~ls~~ 264 (495)
............
T Consensus 215 l~~~~~~~~~~~ 226 (360)
T 3t34_A 215 LMDKGTDAVEIL 226 (360)
T ss_dssp GCCTTCCSHHHH
T ss_pred cCCCcccHHHHH
Confidence 876554444433
No 201
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.88 E-value=4.2e-10 Score=121.46 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+.+|+++|.+|+|||||+++|...-...... +..+.. +..+....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~------------------~giT~~-i~~~~v~~---------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA------------------GGITQH-IGAFLVSL---------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSS------------------CCBCCC-TTSCCBCS----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccC------------------CceeEE-EeEEEEEe----------------
Confidence 4579999999999999999998432111110 011111 11111000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHAKG 257 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~~~ 257 (495)
..+..+.|+||||....... ....+..+|.++||+|++.+... ...+..... ..| ..+++||+|.....
T Consensus 49 ~~g~~i~~iDTPGhe~f~~~-------~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~ 120 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAFSAM-------RARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEAD 120 (537)
T ss_dssp SCSSCCBCEECSSSCCTTTS-------BBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTS
T ss_pred CCCCEEEEEECCChHHHHHH-------HHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccc
Confidence 02457889999996432210 11223478999999999875432 222333332 244 58999999985321
Q ss_pred -cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 258 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 258 -g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......+...+ ...+++....|.+++|+..|.| ++.|++.+...+
T Consensus 121 ~~~v~~~l~~~~---------~~~e~~~~~~~iv~vSAktG~G-I~eLle~I~~l~ 166 (537)
T 3izy_P 121 PEKVKKELLAYD---------VVCEDYGGDVQAVHVSALTGEN-MMALAEATIALA 166 (537)
T ss_dssp CCSSSSHHHHTT---------SCCCCSSSSEEECCCCSSSSCS-SHHHHHHHHHHH
T ss_pred hHHHHHHHHhhh---------hhHHhcCCCceEEEEECCCCCC-chhHHHHHHHhh
Confidence 11112221111 1112222223567899999999 999999998764
No 202
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.86 E-value=4.8e-09 Score=111.27 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=41.5
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHh-ccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~~~~vIlTK~ 251 (495)
.++.+.|+||||... +. ......+..+|.++||+|++.+. .....+.... ..++...+|+||+
T Consensus 83 ~~~~~~iiDtPGh~~----f~---~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 83 PKYQVTVIDAPGHRD----FI---KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SSEEEEEEECCCCTT----HH---HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred CCceEEEEECCCcHH----HH---HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 357899999999642 11 22334455899999999998652 1112222111 2234357899999
Q ss_pred cCC
Q 011010 252 DGH 254 (495)
Q Consensus 252 D~~ 254 (495)
|..
T Consensus 156 Dl~ 158 (458)
T 1f60_A 156 DSV 158 (458)
T ss_dssp GGG
T ss_pred ccc
Confidence 986
No 203
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.86 E-value=8.7e-09 Score=106.94 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCCCeEEEEE-cCCCCcHHHHHHHHHHHHH------HcCCceEEEeccCCc
Q 011010 98 KGKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (495)
Q Consensus 98 ~~~~~vI~iv-G~~GvGKTTl~~kLa~~l~------~~G~kVaIVs~D~~R 141 (495)
...+++|+|+ |..|+||||++.+||.+|+ ++|++|++|++|++.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 3456788888 6779999999999999998 469999999999854
No 204
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.86 E-value=5.4e-09 Score=102.36 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=67.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. |.+++.++. +.+ ++.........
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~------~~~~~~~~~--~~~---------~t~~~~~~~~~------------------ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLI------GEQVVRVSP--FQA---------EGLRPVMVSRT------------------ 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TSCCSCCCS--SCC----------CCCCEEEEEE------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCCcccCC--CCC---------cceeeEEEEEE------------------
Confidence 4579999999999999999999 766543332 111 11111111010
Q ss_pred hcCCcEEEEeCCCCCcc---hHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-cc--HHHHHHHHhcc-----CCceEEEEe
Q 011010 181 KENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATVNPDLVIFVMDSSIG-QA--AFDQAQAFKQS-----VSVGAVIVT 249 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~---~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~--~~~~~~~f~~~-----~~~~~vIlT 249 (495)
..+..+.|+||||.... .+...+.+.+....- .+|.++||+|.... .. .......+.+. ..+..+|+|
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~-~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 159 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNR-TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLT 159 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC-EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcC-CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEe
Confidence 12568899999997432 223333333322222 67899999665421 22 11233333322 124689999
Q ss_pred CccCCC
Q 011010 250 KMDGHA 255 (495)
Q Consensus 250 K~D~~~ 255 (495)
|+|...
T Consensus 160 K~Dl~~ 165 (262)
T 3def_A 160 HAQFSP 165 (262)
T ss_dssp CTTCCC
T ss_pred CcccCC
Confidence 999853
No 205
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=98.86 E-value=9.8e-09 Score=105.17 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~--~~G~kVaIVs~D~ 139 (495)
.+++++.|..|+||||++.+||.+++ ..|++|++|++|+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 46788889999999999999999999 8899999999995
No 206
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.86 E-value=1.7e-10 Score=126.13 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=54.5
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHh-ccCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~~~~vIlTK~ 251 (495)
.++.+.|+||||....... ....+..+|.++||+|++.+. .....+.... ..++..++|+||+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~-------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISG-------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp ------CCEEESSSEEEEE-------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred CCeEEEEEECCChHHHHHH-------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4678899999997532211 111223789999999998531 2222222222 2344357899999
Q ss_pred cCCCCccchhHHHH-hcCCCeEEeccCCCc-c--ccc-ccCccchhhhccCCCCcH--------------HHHHHHHHhC
Q 011010 252 DGHAKGGGALSAVA-ATKSPVIFIGTGEHM-D--EFE-VFDVKPFVSRLLGMGDWS--------------GFMDKIHEVV 312 (495)
Q Consensus 252 D~~~~~g~~ls~~~-~~~~PI~fi~~Ge~i-~--~l~-~f~p~~~vS~l~G~Gdi~--------------~L~e~i~~~~ 312 (495)
|........+.... ... +.+ . .+. ...|.+++|++.|.| +. .|++.+....
T Consensus 326 Dl~~~~~~~~~~i~~el~---------~~l~~~~g~~~~~~~ii~iSA~~G~g-I~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVS---------DFLIKMVGFKTSNVHFVPISAISGTN-LIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GGGTTCHHHHHHHHHHHH---------HHHTTTSCCCGGGEEEEEECSSSCSS-SCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccccccHHHHHHHHHHHH---------HHHHHhhCCCccceEEEEEecccCcc-cccccccccccccchHHHHHHHHhhc
Confidence 98542111111110 000 000 0 000 011446678888888 75 7999998877
Q ss_pred CCC
Q 011010 313 PMD 315 (495)
Q Consensus 313 ~~~ 315 (495)
++.
T Consensus 396 pp~ 398 (592)
T 3mca_A 396 PPE 398 (592)
T ss_dssp CCS
T ss_pred ccc
Confidence 643
No 207
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.86 E-value=9e-11 Score=109.23 Aligned_cols=153 Identities=14% Similarity=0.023 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||++++|. +.+..... ....+.......+. ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~-----------~~~~~~~~~~~~~~-~~---------------- 78 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA------DDTYTESY-----------ISTIGVDFKIRTIE-LD---------------- 78 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB------CCCCCCHH-----------HHHHCCSEEEEEEE-ET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCCCc-----------CCcccceEEEEEEE-EC----------------
Confidence 4579999999999999999997 43221000 00111111111011 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhcc---CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQS---VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~---~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||....... ....+..+|.+++|+|++....... ....+... ..+..+|+||+|..
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTI-------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCC-------SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CEEEEEEEEECCCcHhHHHH-------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 12367899999996432210 1122347899999999986433222 22222221 23458899999985
Q ss_pred CCcc----chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 255 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 255 ~~~g----~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
.... .+..... .+ ..+...+|+..|.| ++.+++++.+.+.
T Consensus 152 ~~~~v~~~~~~~~~~----------------~~--~~~~~~vSA~~g~g-v~~l~~~l~~~l~ 195 (199)
T 3l0i_B 152 TKKVVDYTTAKEFAD----------------SL--GIPFLETSAKNATN-VEQSFMTMAAEIK 195 (199)
T ss_dssp --CCCCSCC-CHHHH----------------TT--TCCBCCCCC---HH-HHHHHHHHTTTTT
T ss_pred ccccCCHHHHHHHHH----------------Hc--CCeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 3311 1111111 11 12446689999999 9999999887663
No 208
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.85 E-value=3.2e-09 Score=97.84 Aligned_cols=152 Identities=12% Similarity=0.024 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|.+||||||+++++.. .+.. +.+.+ +...........
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~------~~~~----~~~~~----------t~~~~~~~~~~~--------------- 63 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT------GTYV----QEESP----------EGGRFKKEIVVD--------------- 63 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH------SSCC----CCCCT----------TCEEEEEEEEET---------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc------CCCC----CCcCC----------CcceEEEEEEEC---------------
Confidence 345799999999999999999982 2211 01111 000000000000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhcc----CCceEEEEeCcc
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQS----VSVGAVIVTKMD 252 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~~----~~~~~vIlTK~D 252 (495)
...+.+.|+||||..... ....+|.+++|+|.+...... .....+... ..+..+|.||+|
T Consensus 64 -~~~~~l~i~Dt~G~~~~~------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 64 -GQSYLLLIRDEGGPPELQ------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp -TEEEEEEEEECSSSCCHH------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred -CEEEEEEEEECCCChhhh------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 124667889999975322 112579999999998643222 222222221 123589999999
Q ss_pred CCCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 253 GHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 253 ~~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.........+... ++.+ ..+ ...+...+|+..|.| ++.+++++.+.+
T Consensus 131 l~~~~~~~v~~~~-----------~~~~~~~~-~~~~~~e~Sa~~~~g-v~~lf~~l~~~i 178 (184)
T 3ihw_A 131 ISAANPRVIDDSR-----------ARKLSTDL-KRCTYYETCATYGLN-VERVFQDVAQKV 178 (184)
T ss_dssp CBTTBCCCSCHHH-----------HHHHHHHT-TTCEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccccccccCHHH-----------HHHHHHHc-CCCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 8421111111000 0011 111 112446689999999 999999887654
No 209
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.85 E-value=1.2e-08 Score=111.33 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--H-HHHHhccCCceEEEEeCccCCCCc-c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--Q-AQAFKQSVSVGAVIVTKMDGHAKG-G 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~-~~~f~~~~~~~~vIlTK~D~~~~~-g 258 (495)
.+.+.|+||||...... ++. ..+..+|.+++|+|++.+..... . .......++ ..+|+||+|..... .
T Consensus 72 ~~~inliDTPGh~dF~~----ev~---r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~~ 143 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSY----EVS---RALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSADVD 143 (600)
T ss_dssp EEEEEEECCCCSGGGHH----HHH---HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHH
T ss_pred eEEEEEEECCCcHhHHH----HHH---HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccCHH
Confidence 46788999999854322 222 22337899999999987654322 1 122223344 58999999985432 1
Q ss_pred chhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. ..+ + ...+..++|++.|.| ++.|++.+.+.++.
T Consensus 144 ~v~~el~~~lg--------------~-~~~~vi~vSAktg~G-I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 144 RVKKQIEEVLG--------------L-DPEEAILASAKEGIG-IEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHTSC--------------C-CGGGCEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhC--------------C-CcccEEEEEeecCCC-chHHHHHHHHhccc
Confidence 1111111 011 1 012357899999999 99999999998864
No 210
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.84 E-value=6.3e-09 Score=107.44 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=85.7
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHH
Q 011010 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIA 172 (495)
Q Consensus 93 ~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia 172 (495)
++++.....+.|+++|.+|+|||||+++|. ++| ++.| +.++...
T Consensus 13 ~~~~~~~~m~~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~------------------~~~~~~~--------- 56 (370)
T 2elf_A 13 GLVPRGSHMANVAIIGTEKSGRTSLAANLG----KKG-----TSSD------------------ITMYNND--------- 56 (370)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHTTS----EEE-----EESS------------------SEEEEEC---------
T ss_pred ccccccccCCEEEEECCCCCCHHHHHHHHH----hCC-----EEEE------------------eeEEEEe---------
Confidence 344443333479999999999999999997 111 1111 1111101
Q ss_pred HHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEe
Q 011010 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVT 249 (495)
Q Consensus 173 ~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlT 249 (495)
..++.+.|+||||...... . ....+..+|.+++|+| ..+... .+....... .++...+++|
T Consensus 57 --------~~~~~i~iiDtPGh~~f~~----~---~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvN 120 (370)
T 2elf_A 57 --------KEGRNMVFVDAHSYPKTLK----S---LITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALT 120 (370)
T ss_dssp --------SSSSEEEEEECTTTTTCHH----H---HHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred --------cCCeEEEEEECCChHHHHH----H---HHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence 1356799999999754322 2 2222338999999999 655332 222222221 2444488999
Q ss_pred -CccCCCCcc--chhHHHHhcCCCeEEeccCCCccccc-ccCccch--hhhcc---CCCCcHHHHHHHHHhCC
Q 011010 250 -KMDGHAKGG--GALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPF--VSRLL---GMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 250 -K~D~~~~~g--~~ls~~~~~~~PI~fi~~Ge~i~~l~-~f~p~~~--vS~l~---G~Gdi~~L~e~i~~~~~ 313 (495)
|+|. .... .....+. +.+.... ...|..+ +|++. |.| ++.|++.+.+.++
T Consensus 121 NK~Dl-~~~~~~~~~~~i~------------~~l~~~~~~~~~ii~~~~SA~~~~~g~g-i~~L~~~l~~~~~ 179 (370)
T 2elf_A 121 RSDST-HMHAIDELKAKLK------------VITSGTVLQDWECISLNTNKSAKNPFEG-VDELKARINEVAE 179 (370)
T ss_dssp CGGGS-CHHHHHHHHHHHH------------HHTTTSTTTTCEEEECCCCTTSSSTTTT-HHHHHHHHHHHHH
T ss_pred eccCC-CHHHHHHHHHHHH------------HHHHhcCCCceEEEecccccccCcCCCC-HHHHHHHHHhhcc
Confidence 9998 3210 0001111 0001110 1235667 89999 999 9999999887764
No 211
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.83 E-value=2.4e-08 Score=104.18 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhc-cCCceEEEEeCccCCCCcc-
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g- 258 (495)
+.+.|+||||.. .+.. .....+..+|.+++|+|++.+. ...+.+..+.. ..++..+++||+|......
T Consensus 81 ~~i~iiDtPGh~----~f~~---~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 81 RRVSFVDSPGHE----TLMA---TMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp EEEEEEECSSHH----HHHH---HHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT
T ss_pred cEEEEEECCCHH----HHHH---HHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH
Confidence 578999999952 2222 2333344789999999998542 12222222222 2334589999999854321
Q ss_pred -chhHHHHhcCCCeEEeccCCCcccc-cccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. +.+... ....|..++|++.|.| ++.|++.+.+.++.
T Consensus 154 ~~~~~~i~------------~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 154 EENYEQIK------------EFVKGTIAENAPIIPISAHHEAN-IDVLLKAIQDFIPT 198 (408)
T ss_dssp TTHHHHHH------------HHHTTSTTTTCCEEEC------C-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH------------HHHhhcCCCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 1111111 000000 1123567899999999 99999999987753
No 212
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=98.82 E-value=7.7e-09 Score=107.58 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHHHHH------HcCCceEEEeccCCc
Q 011010 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (495)
Q Consensus 99 ~~~~vI~iv-G~~GvGKTTl~~kLa~~l~------~~G~kVaIVs~D~~R 141 (495)
..+++|+|+ |..|+||||++.+||.+|+ +.|++|++|++|++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 456788888 7779999999999999998 679999999999854
No 213
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.82 E-value=3.1e-08 Score=110.19 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHHHhc-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
++.+.|+||||...... +. ...+..+|.+++|+|++.+..... ....... .++ ..+|+||+|...
T Consensus 76 ~~~i~liDTPG~~df~~----~~---~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTI----EV---ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHH----HH---HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHH----HH---HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCccc
Confidence 67899999999854322 22 222236799999999987643322 2222222 344 589999999854
No 214
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.82 E-value=1.5e-08 Score=105.75 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhc-cCCceEEEEeCccCCCCcc-
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG- 258 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~-~~~~~~vIlTK~D~~~~~g- 258 (495)
+.+.|+||||.. .+.. .....+..+|.+++|+|++.+. ...+.+..+.. ..+...+|+||+|......
T Consensus 83 ~~i~iiDtPGh~----~f~~---~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 83 RRVSFIDAPGHE----ALMT---TMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EEEEEEECSSHH----HHHH---HHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred cEEEEEECCChH----HHHH---HHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHH
Confidence 568999999952 2222 2333344789999999998642 12222222222 2344578899999864321
Q ss_pred -chhHHHHhcCCCeEEeccCCCccc-ccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 -GALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 -~~ls~~~~~~~PI~fi~~Ge~i~~-l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. +.+.. .....|..++|++.|.| +..|++.+.+.++.
T Consensus 156 ~~~~~~i~------------~~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 156 LENYRQIK------------EFIEGTVAENAPIIPISALHGAN-IDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHH------------HHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH------------HHHHhcCcCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 0111111 00000 01234667899999999 99999999987753
No 215
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.82 E-value=3.2e-09 Score=99.41 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+. .+.|.+ +............
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~------~~~~----~~~~~~---------t~~~~~~~~~~~~---------------- 53 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYT------SNKF----PTDYIP---------TVFDNFSANVAVD---------------- 53 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCC----CSSCCC---------SSCCCEEEEEECS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CccCCC---------ccceeEEEEEEEC----------------
Confidence 4579999999999999999998 2221 111111 1111110000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhc---cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQ---SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~---~~~~~~vIlTK~D~ 253 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+.. ..+ ..+|.||+|.
T Consensus 54 ~~~~~~~i~Dt~G~~~~~~-~------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 125 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQEDYSR-L------RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDL 125 (212)
T ss_dssp SCEEEEEEECCCCCCCCCC---------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred CEEEEEEEEECCCcHHHHH-H------HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHh
Confidence 1246789999999743221 1 1123448899999999975432221 1222222 334 5899999997
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCc-ccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i-~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
...... ......++. ...++.+ ..+ ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 126 ~~~~~~----~~~~~~~v~-~~~~~~~~~~~-~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 179 (212)
T 2j0v_A 126 RDDKGY----LADHTNVIT-STQGEELRKQI-GAAAYIECSSKTQQN-VKAVFDTAIKVVL 179 (212)
T ss_dssp HTCHHH----HHTCSSCCC-HHHHHHHHHHH-TCSEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred hhCccc----cccccCCCC-HHHHHHHHHHc-CCceEEEccCCCCCC-HHHHHHHHHHHHh
Confidence 433110 000000000 0000111 111 112456799999999 9999999987763
No 216
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=4.5e-10 Score=104.75 Aligned_cols=167 Identities=13% Similarity=0.050 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|. +.+.. . .+.+ ++..... . .. ...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~------~~~~~--~--~~~~---------t~~~~~~--~-~~-------------~~~ 74 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYT------TNAFP--G--EYIP---------TVFDNYS--A-NV-------------MVD 74 (204)
Confidence 4569999999999999999997 22210 0 0111 0000000 0 00 001
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++......+ ....+... ..+..+|+||+|..
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 75 GKPVNLGLWDTAGQEDYDR-----L--RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 1245677999999642211 1 1122337899999999875432211 11222221 12358999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..... ................++.+..-..+.+...+|+..|.| ++.|++.+.+.
T Consensus 148 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g-i~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
Confidence 43211 111100000000000011111111122456799999999 99998887654
No 217
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=6.5e-09 Score=95.76 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|.. .+. .+.+.+ +............
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~------~~~----~~~~~~---------t~~~~~~~~~~~~---------------- 62 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAN------DAF----PEEYVP---------TVFDHYAVSVTVG---------------- 62 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH------SSC----CCSCCC---------SSCCCEEEEEESS----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCC---------cccceeEEEEEEC----------------
Confidence 35799999999999999999982 211 011111 1111110000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+... ..+..+|.||+|..
T Consensus 63 ~~~~~~~i~D~~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDR-----L--RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp SCEEEEEEECCCCSSSSTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred CEEEEEEEEECCCCcchhH-----H--HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 1236788999999753221 0 1123447899999999975432111 12222221 22358999999986
Q ss_pred CCccchhHHHHhcC-CCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~-~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.... ......... ..+. ...++.+..-..+.+...+|+..|.| ++.+++++.+.
T Consensus 136 ~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 190 (194)
T 2atx_A 136 DDPK-TLARLNDMKEKPIC-VEQGQKLAKEIGACCYVECSALTQKG-LKTVFDEAIIA 190 (194)
T ss_dssp TCHH-HHHHHTTTTCCCCC-HHHHHHHHHHHTCSCEEECCTTTCTT-HHHHHHHHHHH
T ss_pred cccc-chhhcccccCcccC-HHHHHHHHHHcCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 4321 000000000 0000 00001110001122456789999999 99999988764
No 218
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.81 E-value=1.2e-08 Score=111.69 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH---HHHHHhccCCceEEEEeCccCCCCc-c
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD---QAQAFKQSVSVGAVIVTKMDGHAKG-G 258 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~---~~~~f~~~~~~~~vIlTK~D~~~~~-g 258 (495)
.+.+.|+||||..... .++.+. +..+|.+++|+|++.+..... ........++ ..+|+||+|..... .
T Consensus 70 ~~~l~liDTPGh~dF~----~ev~~~---l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~~ 141 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFS----YEVSRS---LAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADPE 141 (599)
T ss_dssp EEEEEEEECCCCGGGH----HHHHHH---HHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCHH
T ss_pred eEEEEEEECCCchHHH----HHHHHH---HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCcccccHH
Confidence 4678899999985432 222222 235799999999987643222 2222223344 58999999985432 1
Q ss_pred chhHHHH-hcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCCC
Q 011010 259 GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 314 (495)
Q Consensus 259 ~~ls~~~-~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~~ 314 (495)
.....+. ..+. ...+..++|+..|.| ++.|++.+.+.++.
T Consensus 142 ~v~~ei~~~lg~---------------~~~~vi~vSAktg~G-I~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 142 RVAEEIEDIVGI---------------DATDAVRCSAKTGVG-VQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHTCC---------------CCTTCEEECTTTCTT-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC---------------CcceEEEeecccCCC-chhHHHHHhhcCCC
Confidence 1111111 1111 112357799999999 99999999998863
No 219
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.80 E-value=8e-09 Score=107.46 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch-hHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~-a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
..|+++|.+|+|||||+++|.....+.|... |... ..+.+.. ....++.+..... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~~~-e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNAPE-ERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSCCE-EEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcCHH-HHhcCcEEEeeeE-------------Eec
Confidence 4699999999999999999997766655321 1100 0111100 0011111100000 001
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
..++.+.|+||||... +.. .....+..+|.+++|+|++.+... .+....... .++...+++||+|...
T Consensus 63 ~~~~~~~iiDtpG~~~----f~~---~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHAD----YVK---NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHHH----HHH---HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChHH----HHH---HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 1367899999999632 222 233445589999999999875322 222222222 2343478999999864
No 220
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.77 E-value=1.6e-08 Score=106.30 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH--HHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~--~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
++.+.|+||||...... . ....+..+|.+++|+|++.+... ......... ..+...+|+||+|...
T Consensus 103 ~~~~~iiDtpGh~~f~~----~---~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTR----N---MATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SEEEEEEECCCSGGGHH----H---HHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCChHHHHH----H---HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 56789999999643221 1 22233489999999999876322 111221111 2344588999999864
No 221
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.77 E-value=1.8e-08 Score=110.09 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=64.8
Q ss_pred CcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhccCCceEEEEeCccCCCCccc--
Q 011010 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGGG-- 259 (495)
Q Consensus 184 ~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~~~~~~~vIlTK~D~~~~~g~-- 259 (495)
+.+.|+||||....... ....+..+|.+++|+|++.|.. ...........-.+..+++||+|.......
T Consensus 70 ~~i~liDTPGhe~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~ 142 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHE 142 (594)
T ss_dssp CEEEEECCCTTSCCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCT
T ss_pred CCEEEEECCCcHHHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccccccccc
Confidence 46899999997433210 1122336899999999997532 222233333222236999999998532100
Q ss_pred ---hh----------------------HHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 260 ---AL----------------------SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 260 ---~l----------------------s~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.. ..+...+...... ..+.+.....|..++|++.|.| +..|++.+...+
T Consensus 143 ~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~---~~l~~~~~~vpvv~vSA~tG~G-I~eLl~~I~~~~ 216 (594)
T 1g7s_A 143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF---DRVTDFASQVSIIPISAITGEG-IPELLTMLMGLA 216 (594)
T ss_dssp TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEG---GGCSCTTTEEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHH---HHHHhccCcceEEEEeccCCCC-chhHHHHHHhhc
Confidence 00 0011111100000 0001112234678899999999 999999987654
No 222
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.75 E-value=2.7e-08 Score=107.77 Aligned_cols=122 Identities=18% Similarity=0.155 Sum_probs=67.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---Hc-----CCce--EEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KK-----GWKP--ALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVR 170 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~---~~-----G~kV--aIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ 170 (495)
.+.|+|+|..++|||||+-+|..+-. +. |... .+.+. ......-+|.+.....
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~-----------~~~EreRGITI~s~~~------ 93 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDW-----------MAMERERGISVTTSVM------ 93 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTEE------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCC-----------hHHHHHCCCcEeeceE------
Confidence 46799999999999999999985421 11 1100 11111 1111122222211100
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHHH-HhccCCceEEE
Q 011010 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQA-FKQSVSVGAVI 247 (495)
Q Consensus 171 ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~~-f~~~~~~~~vI 247 (495)
.+...++.+-||||||...... |..+... -+|..++||||..|-.+.. ..+. ....+| ..++
T Consensus 94 -------~~~~~~~~iNlIDTPGHvDF~~----Ev~raL~---~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~f 158 (548)
T 3vqt_A 94 -------QFPYRDRVVNLLDTPGHQDFSE----DTYRVLT---AVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTF 158 (548)
T ss_dssp -------EEEETTEEEEEECCCCGGGCSH----HHHHHHH---SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEE
T ss_pred -------EEEECCEEEEEEeCCCcHHHHH----HHHHHHH---hcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEE
Confidence 1223578899999999854433 3333333 5699999999998765432 2222 223355 4899
Q ss_pred EeCccCC
Q 011010 248 VTKMDGH 254 (495)
Q Consensus 248 lTK~D~~ 254 (495)
+||+|..
T Consensus 159 INK~Dr~ 165 (548)
T 3vqt_A 159 VNKMDRE 165 (548)
T ss_dssp EECTTSC
T ss_pred Eecccch
Confidence 9999974
No 223
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.74 E-value=9.9e-09 Score=109.88 Aligned_cols=158 Identities=21% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
++.+|+++|.+|+|||||+++|...-...+.. ...|.. +..+...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~------------------~GIT~~-i~~~~v~---------------- 47 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA------------------GGITQH-IGAYHVE---------------- 47 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB------------------CCCCCC-SSCCCCC----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccC------------------CCeeEe-EEEEEEE----------------
Confidence 45679999999999999999997421111110 001100 1001100
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHHHHHHh-ccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~~~~f~-~~~~~~~vIlTK~D~~~~ 256 (495)
..++.+.|+||||....... ....+..+|.+++|+|++.+. ...+.+.... ..+| ..+++||+|....
T Consensus 48 -~~~~~i~~iDTPGhe~f~~~-------~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~ 118 (501)
T 1zo1_I 48 -TENGMITFLDTPGHAAFTSM-------RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEA 118 (501)
T ss_dssp -TTSSCCCEECCCTTTCCTTS-------BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTT
T ss_pred -ECCEEEEEEECCCcHHHHHH-------HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccccc
Confidence 12567899999997432211 112234789999999998642 1222222222 2345 5999999998532
Q ss_pred c-cchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 257 G-GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 257 ~-g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
. ......+... +...+.+....|..++|++.|.| +..|++.+...
T Consensus 119 ~~~~v~~~l~~~---------~~~~~~~~~~~~~v~vSAktG~g-I~eLle~I~~~ 164 (501)
T 1zo1_I 119 DPDRVKNELSQY---------GILPEEWGGESQFVHVSAKAGTG-IDELLDAILLQ 164 (501)
T ss_dssp CCCCTTCCCCCC---------CCCTTCCSSSCEEEECCTTTCTT-CTTHHHHTTTT
T ss_pred CHHHHHHHHHHh---------hhhHHHhCCCccEEEEeeeeccC-cchhhhhhhhh
Confidence 1 1111111000 00001111224667899999999 99999998653
No 224
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.5e-08 Score=96.25 Aligned_cols=158 Identities=13% Similarity=0.042 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.+. |.+..+++. .+. .+..++..... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~------~~~~~~~~~-----------~~~---~g~d~~~~~i~-------------~~ 83 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------CEV---LGEDTYERTLM-------------VD 83 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CCCCTTCCC-----------------CCTTEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCCCCc-----------CCc---cceeeEEEEEE-------------EC
Confidence 3569999999999999999998 543322221 000 11111110000 00
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HH-HHHHHHhc----cCCceEEEEeCccC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AF-DQAQAFKQ----SVSVGAVIVTKMDG 253 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~-~~~~~f~~----~~~~~~vIlTK~D~ 253 (495)
...+.++++||+|..... ..+. ......+|.+++|.|.+.... .. .....+.. ...+..+|.||+|+
T Consensus 84 ~~~~~l~~~Dt~g~~~~~----~~l~--~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 84 GESATIILLDMWENKGEN----EWLH--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp TEEEEEEEECCTTTTHHH----HHHH--HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred CeeeEEEEeecCCCcchh----hhHH--HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 123567899999965321 1121 112236789999999874322 11 11122221 11245899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
........... +.... ....+...+|++.|.| ++.+++.+.+.+
T Consensus 158 ~~~r~v~~~e~-------------~~~a~-~~~~~~~e~SAk~g~~-v~elf~~l~~~i 201 (211)
T 2g3y_A 158 VRCREVSVSEG-------------RACAV-VFDCKFIETSAAVQHN-VKELFEGIVRQV 201 (211)
T ss_dssp GGGCCSCHHHH-------------HHHHH-HHTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred hcCceEeHHHH-------------HHHHH-HcCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 53211101100 00000 0011345689999999 999999887654
No 225
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.73 E-value=3.2e-08 Score=104.12 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=42.0
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHhc-cCCceEEEEeCc
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKM 251 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~~-~~~~~~vIlTK~ 251 (495)
.++.+.|+||||...... .....+..+|.+++|+|++.+. ........... ..+...+++||+
T Consensus 82 ~~~~~~iiDtpG~~~f~~-------~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVK-------NMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp SSCEEEECCCSSSTTHHH-------HHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred CCeEEEEEECCCcHHHHH-------HHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 467899999999754221 1333455899999999998751 11111111111 233358999999
Q ss_pred cCCC
Q 011010 252 DGHA 255 (495)
Q Consensus 252 D~~~ 255 (495)
|...
T Consensus 155 Dl~~ 158 (435)
T 1jny_A 155 DLTE 158 (435)
T ss_dssp GGSS
T ss_pred cCCC
Confidence 9864
No 226
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.72 E-value=6.7e-08 Score=107.72 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHh-ccCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFK-QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~-~~~~~~~vIlTK~D~~~ 255 (495)
.+++.||||||..... .+.. .++..+|.+++|+|++.+.... ....... ..++ ..+|+||+|...
T Consensus 81 ~~~i~liDTPG~~df~----~~~~---~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFT----IEVE---RSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchH----HHHH---HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccc
Confidence 4899999999975322 2222 2333679999999998764322 2222222 2344 588999999854
No 227
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.72 E-value=1.7e-08 Score=93.58 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-ccHHH-HHHHHhc-----cCCceEEEEeCccCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QAAFD-QAQAFKQ-----SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~~~~-~~~~f~~-----~~~~~~vIlTK~D~~~ 255 (495)
.+.+.|+||||.......... .......+|.+++|+|++.. .+... ....+.+ ...+..+|.||+|...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFD----YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCC----HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred eeEEEEEECCCCHHHHhhhhh----cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 578999999996432111000 01222378999999999864 12222 1122211 1234589999999754
Q ss_pred Cccch---hHHHHhcCCCeEEeccCCCccc-c--cccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGGA---LSAVAATKSPVIFIGTGEHMDE-F--EVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~~---ls~~~~~~~PI~fi~~Ge~i~~-l--~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
..... ..+... .++.+.. . ....+...+|+.. .| +..+++.+.+.
T Consensus 144 ~~~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~e~Sa~~-~~-v~~~f~~l~~~ 194 (196)
T 3llu_A 144 DDHKIETQRDIHQR---------ANDDLADAGLEKLHLSFYLTSIYD-HS-IFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHTTCTTSCEEEEEECTTS-TH-HHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHH---------HHHHHHHhhhhcCCcceEEEEech-hh-HHHHHHHHHHH
Confidence 21100 000000 0011100 0 1112345689999 88 99999888664
No 228
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.71 E-value=6.3e-08 Score=99.59 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=52.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCc-ceeccCCCCCh-HHHHHHHHHHHh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI-PFYGSYTESDP-VRIAVEGVETFK 180 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i-~~~~~~~~~dp-~~ia~~~l~~~~ 180 (495)
.|+|+|.|||||||++|.|+ +.+ +.++. .+.+|.... .... . .+. ...........+
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt------~~~-~~v~~-----------~p~tTi~p~~g~v~-~--~~~r~~~l~~~~~~~~ 62 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALT------KAG-IEAAN-----------YPFCTIEPNTGVVP-M--PDPRLDALAEIVKPER 62 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHH------HTC------------------CCCCCCCCSSEEE-C--CCHHHHHHHHHHCCSE
T ss_pred EEEEECCCCCCHHHHHHHHH------CCC-CcccC-----------CCCceECceEEEEe-c--CCcccceeeeeecccc
Confidence 58999999999999999999 444 22222 122222110 0000 0 111 000000000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~ 226 (495)
.....+.|+||||....... .+.+ ..+...+..+|.+++|+|++.
T Consensus 63 ~~~~~i~lvDtpGl~~~a~~-~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 63 ILPTTMEFVDIAGLVAGASK-GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EECCEEEEEECCSCCTTHHH-HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeeEEEEEECCCCcccccc-cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 11357899999998643321 1122 223334458999999999974
No 229
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.71 E-value=1.2e-07 Score=97.82 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+++++.|..|+||||++.+||.++++.|++|++|++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467888999999999999999999999999999999
No 230
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.69 E-value=4.8e-08 Score=91.69 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+...|+|+|++||||||+++.|+ +..... ....+.+ ... .+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~------~~~~~~-~~~~~~~----------------~~~----~~~----------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT------TDSVRP-TVVSQEP----------------LSA----ADY----------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH------HSSCCC-BCCCSSC----------------EEE----TTG-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------cCCCCC-eeeecCc----------------eEE----EEe-----------
Confidence 34579999999999999999998 322100 0000111 000 000
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC-cccc---HHHHHHHHhc-------cCCceEEEE
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS-IGQA---AFDQAQAFKQ-------SVSVGAVIV 248 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~-~g~~---~~~~~~~f~~-------~~~~~~vIl 248 (495)
..+.+.|+||||...........+ ......+|.+++|+|++ .... .......+.. ...+..+|+
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~---~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYL---KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHH---HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred --eCceEEEEECCCcHHHHHHHHHHH---HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEE
Confidence 256889999999865443322222 12222478999999998 2211 1122211111 123358999
Q ss_pred eCccCCCC
Q 011010 249 TKMDGHAK 256 (495)
Q Consensus 249 TK~D~~~~ 256 (495)
||+|....
T Consensus 128 nK~Dl~~~ 135 (218)
T 1nrj_B 128 NKSELFTA 135 (218)
T ss_dssp ECTTSTTC
T ss_pred EchHhccc
Confidence 99998644
No 231
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.67 E-value=1.9e-08 Score=93.31 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.++ |.+..+++. ... .+..++..... ...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~------~~~~~~~~~-----------~~~---~~~~~~~~~~~-------------~~~ 53 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------XEV---LGEDTYERTLM-------------VDG 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HHSCCC---------------GG---GCTTEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCcCCcCcc-----------ccc---cceeEEEEEEE-------------ECC
Confidence 469999999999999999998 322222221 000 01111110000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HH-HHHHHHh---c-cCCceEEEEeCccCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AF-DQAQAFK---Q-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~-~~~~~f~---~-~~~~~~vIlTK~D~~ 254 (495)
..+.++++||+|...... .+.... ...+|.+++|.|.+.... .. .....+. . .-.+..+|.||+|..
T Consensus 54 ~~~~l~~~Dt~~~~~~~~----~~~~~~--~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 54 ESATIILLDMWENKGENE----WLHDHC--MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEEEECCCCC----C----TTGGGH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred eEEEEEEEEeccCcchhh----hHHHhh--cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 235678999999643211 111111 114688899998864321 11 1111121 1 112358999999975
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
......... |+.... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~r~v~~~~-------------~~~~a~-~~~~~~~e~SA~~g~~-v~~lf~~l~~~~ 170 (192)
T 2cjw_A 128 RXREVSVSE-------------GRAXAV-VFDXKFIETSAAVQHN-VKELFEGIVRQV 170 (192)
T ss_dssp GGCCSCHHH-------------HHHHHH-HTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccHHH-------------HHHHHH-HhCCceEEeccccCCC-HHHHHHHHHHHH
Confidence 321110110 010000 0011335689999999 999999887654
No 232
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.66 E-value=9.9e-08 Score=105.71 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=67.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH---cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK---KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~---~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
...|+|+|++|+|||||++.|+..... .| +| .....+..-..... +.++.+.....
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~d~~~~e~-----~~giti~~~~~------------- 67 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTTDYTPEAK-----LHRTTVRTGVA------------- 67 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSSCCSHHHH-----HTTSCCSCEEE-------------
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccccCCHHHH-----hcCCeEEecce-------------
Confidence 457999999999999999999955331 12 12 00000000000001 11121111000
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHHHHhc-cCCceEEEEeCccCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGH 254 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~~f~~-~~~~~~vIlTK~D~~ 254 (495)
.+....+.+.|+||||...... +.. ..+..+|.+++|+|++.+.+.. ........ ..+ ..+|+||+|..
T Consensus 68 ~~~~~~~~~nliDTpG~~~f~~----~~~---~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 68 PLLFRGHRVFLLDAPGYGDFVG----EIR---GALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp EEEETTEEEEEEECCCSGGGHH----HHH---HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC
T ss_pred EEeeCCEEEEEEeCCCccchHH----HHH---HHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh
Confidence 0001256789999999754322 222 2223579999999998764432 22222222 234 58899999986
No 233
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=3.8e-07 Score=95.37 Aligned_cols=261 Identities=14% Similarity=0.127 Sum_probs=125.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
+.+++|+|++|||||||++.|+..+.. .+..+.... ..+++.++ ++. ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g-----------~~~t~~~~-v~q-~~---------------- 117 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGV-----------VEVTMERH-PYK-HP---------------- 117 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------------CCCE-EEE-CS----------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECC-----------eecceeEE-ecc-cc----------------
Confidence 458999999999999999999932211 111111110 00111122 111 11
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-cHHHHHHHHhccCCceEEEEeCccCCC----
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHA---- 255 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-~~~~~~~~f~~~~~~~~vIlTK~D~~~---- 255 (495)
...++.++|++|.........+.+..+. +...+..++ ++...++ .....+.++.....+..+|+||.|..-
T Consensus 118 -~~~~ltv~D~~g~~~~~~~~~~~L~~~~--L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 118 -NIPNVVFWDLPGIGSTNFPPDTYLEKMK--FYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp -SCTTEEEEECCCGGGSSCCHHHHHHHTT--GGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH
T ss_pred -ccCCeeehHhhcccchHHHHHHHHHHcC--CCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcc
Confidence 1236899999997543222222222211 213355554 7765323 234456666554445689999987520
Q ss_pred -C------ccchhHHHHhcCCCeEEeccCCCcccc-cccCccchhhh--ccCCCCcHHHHHHHHHhCCCCCchHHhhccc
Q 011010 256 -K------GGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSR--LLGMGDWSGFMDKIHEVVPMDQQPELLQKLS 325 (495)
Q Consensus 256 -~------~g~~ls~~~~~~~PI~fi~~Ge~i~~l-~~f~p~~~vS~--l~G~Gdi~~L~e~i~~~~~~~~~~~~~~~~~ 325 (495)
. ....+..+...- -+.+.+. ..+...+++|. +.+.| ++.|.+.+.+.+|+.+.......+-
T Consensus 194 tsgLD~~~~~~l~~~l~~l~--------~~~l~~~g~~~~~iiliSsh~l~~~~-~e~L~d~I~~~Lpeg~~~~~~~~l~ 264 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNC--------VNTFRENGIAEPPIFLLSNKNVCHYD-FPVLMDKLISDLPIYKRHNFMVSLP 264 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHH--------HHHHHHTTCSSCCEEECCTTCTTSTT-HHHHHHHHHHHSCGGGHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHH--------HHHHHhcCCCCCcEEEEecCcCCccC-HHHHHHHHHHhCccchhhHHHHhcc
Confidence 0 011112211000 0000010 12334466777 45556 9999999999998654322212222
Q ss_pred c-chhcHHHHHHHHHHHhc-cCChhHHhhcC--CCCCCccCchhhhhhhhhhhhhHhHhhcCCCHHhhcCCCCCCcchHH
Q 011010 326 E-GNFTLRIMYEQFQNILK-MGPIGQVFSML--PGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNDSR 401 (495)
Q Consensus 326 ~-~~f~~~d~~~ql~~~~k-~g~~~~~~~~~--P~~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~~i~~sr 401 (495)
. .+-+.++=...+++... -.-.+....-+ ||+.+ ......-...+..|..+.- ++..-
T Consensus 265 ~~~~~~~e~k~~~~~~~i~~~a~~a~~~~~~P~~g~~~----~~~~~~~~~~l~~~~~~FG--------------ld~~s 326 (413)
T 1tq4_A 265 NITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLL----DSDLETLKKSMKFYRTVFG--------------VDETS 326 (413)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCC----HHHHHHHHHHHHHHHHHTT--------------CSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhc----cccHHHHHHHHHHHHHhcC--------------CCHHH
Confidence 2 22333333333322211 11112222233 34321 1101111222333333331 35566
Q ss_pred HHHHHhhcCCCHHHHHHHHHHH
Q 011010 402 IMRIARGSGRQVREVMEMLEEY 423 (495)
Q Consensus 402 ~~ria~gsg~~~~~v~~ll~~~ 423 (495)
++|||...|++++|+..+++..
T Consensus 327 l~~~a~~~~~~~~~~~~~~~s~ 348 (413)
T 1tq4_A 327 LQRLARDWEIEVDQVEAMIKSP 348 (413)
T ss_dssp HHHHHSSSSSCHHHHHHTCSHH
T ss_pred HHHHHHHhCCCHHHHHHHHhCh
Confidence 9999999999999999988876
No 234
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.66 E-value=1e-08 Score=93.83 Aligned_cols=167 Identities=15% Similarity=0.085 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.|.. .+. .+.|.+.. +..+...... .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~------~~~----~~~~~~t~-----------~~~~~~~~~~--------------~ 51 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK------DCF----PENYVPTV-----------FENYTASFEI--------------D 51 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH------SCC----CSSCCCCS-----------EEEEEEEEEC--------------S
T ss_pred EEEEEEECCCCCCHHHHHHHHhc------CCC----CCCCCCcc-----------ceeEEEEEEE--------------C
Confidence 45699999999999999999983 211 01121100 0000000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + .......+|.+++|+|++........ ...+... ..+..+|.||+|..
T Consensus 52 ~~~~~~~i~Dt~G~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYDN-----V--RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SCEEEEEEEEECCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhh-----h--HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 1246789999999643211 1 11233488999999999854322211 1222221 23458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhc-cCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l-~G~Gdi~~L~e~i~~~ 311 (495)
...............++.. ..++.+..-....+...+|++ .|.| ++.+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~Sa~~~~~g-i~~l~~~i~~~ 180 (184)
T 1m7b_A 125 TDVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 180 (184)
T ss_dssp GCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECBTTTBHHH-HHHHHHHHHHH
T ss_pred cchhhHhhhhhcccCCCCH-HHHHHHHHHcCCcEEEEeeecCCCcC-HHHHHHHHHHH
Confidence 3211000000000000000 000111000012345668998 5888 99999888664
No 235
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.66 E-value=2.2e-08 Score=100.50 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+++|.+||||||+++.+. +.....++. ....| .++.+..... .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~------~~~~~~~~~-----------~~~~T-i~~~~~~~~~----------------~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF------SNYSAFDTR-----------RLGAT-IDVEHSHLRF----------------L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------SCCCTGGGG-----------GCCCC-CSEEEEEEEE----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCcccc-----------CcCCc-cceEEEEEEe----------------C
Confidence 469999999999999999988 432211111 11111 1221111000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH------HHHHHhcc--CCceEEEEeCccC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD------QAQAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~------~~~~f~~~--~~~~~vIlTK~D~ 253 (495)
.++.+.|+||||.....+.....+ ....+..+|.+++|+|++......+ ....+... ..+..+|+||+|.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~--~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl 127 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQ--KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 127 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTT--HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhH--HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc
Confidence 257889999999743211111111 2233458999999999986532111 12222211 2346899999998
Q ss_pred CC
Q 011010 254 HA 255 (495)
Q Consensus 254 ~~ 255 (495)
..
T Consensus 128 ~~ 129 (307)
T 3r7w_A 128 VQ 129 (307)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 236
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.65 E-value=2.5e-08 Score=104.49 Aligned_cols=157 Identities=16% Similarity=0.214 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhc-CcceeccCCCCChHHHHHHHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~-~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.|+|+|+||||||||++.|+ +.++.+-+. +.++.. .+-+.. ..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Ls------g~~~~i~~~------------~ftTl~p~~G~V~-~~----------------- 202 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMT------RAHPKIAPY------------PFTTLSPNLGVVE-VS----------------- 202 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHC------SSCCEECCC------------TTCSSCCEEEEEE-CS-----------------
T ss_pred EEEEECCCCCcHHHHHHHHH------cCCccccCc------------ccceecceeeEEE-ec-----------------
Confidence 58999999999999999999 765533221 112111 111111 00
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCC-ccccHHH----HHHHHhcc--CCceEEEEeCccC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSS-IGQAAFD----QAQAFKQS--VSVGAVIVTKMDG 253 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~-~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~ 253 (495)
....+.+.||||........ ..+ ......+..++.+++|+|++ ....... +...+... ..+..+|+||+|.
T Consensus 203 ~~~~~~l~DtpGli~~a~~~-~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl 281 (416)
T 1udx_A 203 EEERFTLADIPGIIEGASEG-KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDL 281 (416)
T ss_dssp SSCEEEEEECCCCCCCGGGS-CCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTT
T ss_pred CcceEEEEeccccccchhhh-hhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCCh
Confidence 12578999999974211100 000 11222334789999999986 1111111 12222111 1346899999998
Q ss_pred CCCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 254 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 254 ~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... ..+..+. +.+.. .-.+..++|++.+.| ++.|++++.+.+.
T Consensus 282 ~~~--~~~~~l~------------~~l~~--~g~~vi~iSA~~g~g-i~eL~~~i~~~l~ 324 (416)
T 1udx_A 282 LEE--EAVKALA------------DALAR--EGLAVLPVSALTGAG-LPALKEALHALVR 324 (416)
T ss_dssp SCH--HHHHHHH------------HHHHT--TTSCEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred hhH--HHHHHHH------------HHHHh--cCCeEEEEECCCccC-HHHHHHHHHHHHH
Confidence 654 2222211 00100 112457899999999 9999999988774
No 237
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.64 E-value=9.4e-08 Score=110.22 Aligned_cols=169 Identities=16% Similarity=0.070 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEE--EeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL--VCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaI--Vs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
...|+++|.+|+|||||+++|.....+.|..... ...|. +.. ....++.+..... .
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~--------~~~-ErerGITIdva~v-------------~ 353 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDN--------APE-EKARGITINTSHV-------------E 353 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC------------------------------CCSCE-------------E
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccccccccccccccc--------ccc-cccCceeEEEEEE-------------E
Confidence 4579999999999999999999765544431100 00111 000 0001111100000 0
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcccc--HHHHHHHHhc-cCCceEEEEeCccCCC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~--~~~~~~~f~~-~~~~~~vIlTK~D~~~ 255 (495)
+...++.+.|+||||... +. ......+..+|.+++|+|++.+.. ..+.+..... .++...+++||+|...
T Consensus 354 f~~~~~kI~IIDTPGHed----F~---~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHAD----YV---KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EECSSCEEEEEECCCHHH----HH---HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred EcCCCEEEEEEECCChHH----HH---HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 012367899999999632 22 223344558999999999986522 2222222222 3443478999999864
Q ss_pred CccchhH--------HHHhcCCCeEEeccCCCcccccccCccchhhhccC--------CCCcHHHHHHHHHhCC
Q 011010 256 KGGGALS--------AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG--------MGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g~~ls--------~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G--------~Gdi~~L~e~i~~~~~ 313 (495)
.. ..+. .+...+.+ ....|..++|++.| .| +..|++.+.+.++
T Consensus 427 d~-e~le~i~eEi~elLk~~G~~-------------~~~vp~IpvSAktG~ng~~~w~eG-I~eLleaL~~~Ip 485 (1289)
T 3avx_A 427 DE-ELLELVEMEVRELLSQYDFP-------------GDDTPIVRGSALKALEGDAEWEAK-ILELAGFLDSYIP 485 (1289)
T ss_dssp CH-HHHHHHHHHHHHHHHHTTSC-------------TTTCCEEECCSTTTTTCCHHHHHH-HHHHHHHHHHTSC
T ss_pred ch-hhHHHHHHHHHHHHHhcccc-------------ccceeEEEEEeccCCCCCcccccc-chhhHhHHhhhcC
Confidence 21 1111 11111100 00124456777777 35 8899999988775
No 238
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.64 E-value=8.5e-09 Score=97.43 Aligned_cols=169 Identities=13% Similarity=0.066 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. ..|.+. . +..+...... .
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~------~~~~~----~~~~~t---------~--~~~~~~~~~~--------------~ 71 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA------KDCYP----ETYVPT---------V--FENYTACLET--------------E 71 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSCCC----SSCCCC---------S--EEEEEEEEEC---------------
T ss_pred eEEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCCe---------e--eeeEEEEEEE--------------C
Confidence 4579999999999999999998 32210 111110 0 1111000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++....... ....+... -.+..+|.||+|..
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDN-----V--RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp -CEEEEEEEEECCSGGGTT-----T--GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHhHHH-----H--HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 1246789999999643221 1 1123448899999999986433222 12222221 23458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
................+. ...++.+..-..+.+...+|+..|.|.++.+++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 145 TDLSTLMELSHQKQAPIS-YEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp GCHHHHHHHHHTTCCCCC-HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccccCccC-HHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 421100000000000000 000011101111224466899998855889988887765
No 239
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.62 E-value=2.1e-08 Score=91.96 Aligned_cols=163 Identities=19% Similarity=0.122 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.|+|+|++||||||+++.|+ +........ + ....++.+........ .....
T Consensus 4 kv~ivG~~gvGKStLl~~l~------~~~~~~~~~--~-----------~~t~g~~~~~~~~~~~----------~~~~~ 54 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM------KTKKSDLGM--Q-----------SATVGIDVKDWPIQIR----------DKRKR 54 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT------CC------------------------CSEEEEEEEC------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCccCCC--c-----------ceeccEEeEEeeeccc----------cCCCC
Confidence 59999999999999999998 532111110 0 0112233221110000 00013
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH----HHHHHhcc--CCceEEEEeCccCCCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAK 256 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~----~~~~f~~~--~~~~~vIlTK~D~~~~ 256 (495)
.+.+.++||||..... .+.. ..+..++.+++|+|.+......+ ....+... -.+..+|.||+|....
T Consensus 55 ~~~~~i~Dt~G~~~~~-----~~~~--~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFY-----STHP--HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp -CEEEEEEECSHHHHH-----TTSH--HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred ceEEEEEecCCCHHHH-----HhhH--HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 5778999999953211 1111 11225688899999876532222 11222211 2345777899998543
Q ss_pred ccchhH-HHHhcCCCeEEeccCCCc-cccc--ccCccchhhhccCC-CCcHHHHHHHHHhCC
Q 011010 257 GGGALS-AVAATKSPVIFIGTGEHM-DEFE--VFDVKPFVSRLLGM-GDWSGFMDKIHEVVP 313 (495)
Q Consensus 257 ~g~~ls-~~~~~~~PI~fi~~Ge~i-~~l~--~f~p~~~vS~l~G~-Gdi~~L~e~i~~~~~ 313 (495)
. ..+ ..... ++.+ ..+. ...+...+|+..|. | +..|++.+.+.+.
T Consensus 128 ~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Sa~~~~~~-~~~l~~~i~~~~~ 177 (184)
T 2zej_A 128 K--QRKACMSKI---------TKELLNKRGFPAIRDYHFVNATEESDA-LAKLRKTIINESL 177 (184)
T ss_dssp H--HHHHHHHHH---------HHHTTTCTTSCEEEEEEECCTTSCCHH-HHHHHHHHHHHHH
T ss_pred h--hhHHHHHHH---------HHHHHHhcCCcchhheEEEecccCchh-HHHHHHHHHHHHh
Confidence 1 111 00000 0111 1111 01124568999996 7 9999998877653
No 240
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.62 E-value=1.7e-08 Score=100.73 Aligned_cols=168 Identities=14% Similarity=0.035 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+++|.+||||||+++.+.. .+. . +.+.+ ++...........
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~------~~~--~--~~~~~---------t~~~~~~~~~~~~---------------- 199 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTT------NAF--P--GEYIP---------TVFDNYSANVMVD---------------- 199 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH------SCC--C--CSCCC---------CSEEEEEEEEEET----------------
T ss_pred eeEEEEECCCCCChHHHHHHHHh------CCC--C--cccCC---------cccceeEEEEEEC----------------
Confidence 34699999999999999999982 211 0 11111 1111000000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++......+. ...+... ..+..+|+||+|..
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDR-----L--RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp TEEEEEEEEEECCCGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred CEEEEEEEEeCCCchhhhH-----H--HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 1235567999999743221 0 11234488999999999864332221 1222221 22458999999974
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... .................++.+..-..+.+...+|+..|.| ++.|++.+.+.+
T Consensus 273 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 328 (332)
T 2wkq_A 273 DDKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 328 (332)
T ss_dssp TCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccc-hhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcC-HHHHHHHHHHHH
Confidence 3311 1111111000000000001110001122556789999999 999999887654
No 241
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.61 E-value=5.8e-09 Score=98.11 Aligned_cols=167 Identities=15% Similarity=0.087 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
...|+|+|.+||||||+++.|. +.+.. +.|.+.. +..+...... .
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~----~~~~~t~-----------~~~~~~~~~~--------------~ 72 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA------KDCFP----ENYVPTV-----------FENYTASFEI--------------D 72 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCCCS-----------EEEEEEEEES--------------S
T ss_pred eeEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCCcc-----------ceeEEEEEEE--------------C
Confidence 4579999999999999999998 32210 1111100 0000000000 0
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHHH----HHHHhcc--CCceEEEEeCccCC
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGH 254 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~~----~~~f~~~--~~~~~vIlTK~D~~ 254 (495)
...+.+.|+||||...... + ....+..+|.+++|+|++........ ...+... ..+..+|.||+|..
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~-----~--~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDN-----V--RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SSEEEEEEEEECCSGGGTT-----T--GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEeCCCcHhhhH-----H--HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 1246789999999643211 1 11233488999999999854322211 1222221 23458999999985
Q ss_pred CCccchhHHHHhcCCCeEEeccCCCcccccccCccchhhhc-cCCCCcHHHHHHHHHh
Q 011010 255 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 311 (495)
Q Consensus 255 ~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l-~G~Gdi~~L~e~i~~~ 311 (495)
...............+|.. ..++.+..-....+...+|++ .|.| ++.+++.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~SAk~~~~g-v~~lf~~l~~~ 201 (205)
T 1gwn_A 146 TDVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 201 (205)
T ss_dssp GCHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECCTTTCHHH-HHHHHHHHHHH
T ss_pred cchhhhhhhcccccCCCCH-HHHHHHHHHcCCCEEEEeeeccCCcC-HHHHHHHHHHH
Confidence 3211000000000000000 000111000012244668988 5788 99999887664
No 242
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.57 E-value=1.5e-07 Score=89.76 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|.+||||||+++.+.. +.= .+.|.| ..++.++......+ .
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~-----~~f-----~~~~~~-----------Tig~d~~~k~~~~~-------------~ 59 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY-----DSF-----DNTYQA-----------TIGIDFLSKTMYLE-------------D 59 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----SCC-----C---------------------CEEEEEECS-------------S
T ss_pred EEEEEECcCCcCHHHHHHHHHh-----CCC-----CCCcCC-----------ccceEEEEEEEEec-------------c
Confidence 4699999999999999999872 110 011111 01111111000000 1
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHH---HHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQ---AFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~---~f~~~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|.||||...... + .......++.+++|.|.+...... .... .....-.+..+|.||+|+..
T Consensus 60 ~~v~l~iwDtaGqe~~~~-----l--~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRS-----L--IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp CEEEEEEECCSCTTTCGG-----G--HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred eEEEEEEEECCCchhhhh-----H--HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 246778999999643221 1 112234889999999987533211 1111 11112224588899999854
Q ss_pred Ccc----chhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhCC
Q 011010 256 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 256 ~~g----~~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
... .+...... +. .+-..+|++.|.| ++.+++.+.+.+.
T Consensus 133 ~r~V~~~e~~~~a~~----------------~~--~~~~e~SAktg~n-V~e~F~~i~~~i~ 175 (216)
T 4dkx_A 133 KRQVSIEEGERKAKE----------------LN--VMFIETSAKAGYN-VKQLFRRVAAALP 175 (216)
T ss_dssp GCCSCHHHHHHHHHH----------------HT--CEEEEEBTTTTBS-HHHHHHHHHHHC-
T ss_pred cCcccHHHHhhHHHH----------------hC--CeeEEEeCCCCcC-HHHHHHHHHHHHH
Confidence 211 11111111 11 1224589999999 9999999988774
No 243
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.56 E-value=1.5e-07 Score=103.72 Aligned_cols=183 Identities=16% Similarity=0.094 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
+.|+|+|..++|||||+-+|..+-.. +-.+|. .-+++ .|. ......-+|.+..... .+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~--~g~~~----~D~-~~~EreRGITI~s~~~-------------~~ 62 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVD--KGTTR----TDN-TLLERQRGITIQTGIT-------------SF 62 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC--CSCCS----TTC-STTHHHHSSCSSCCCC-------------CC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccc--cCCcc----cCC-cHHHHhCCCcEEeeeE-------------EE
Confidence 35999999999999999999865432 101110 00000 000 0111122333222111 11
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH--HHHH-HHhccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF--DQAQ-AFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~--~~~~-~f~~~~~~~~vIlTK~D~~~~ 256 (495)
..+++.+-||||||...... |. .+++.-+|..++||||..|-... ...+ .....+++ .+++||+|....
T Consensus 63 ~~~~~~iNlIDTPGH~DF~~----Ev---~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a 134 (638)
T 3j25_A 63 QWENTKVNIIDTPGHMDFLA----EV---YRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGI 134 (638)
T ss_dssp BCSSCBCCCEECCCSSSTHH----HH---HHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSC
T ss_pred EECCEEEEEEECCCcHHHHH----HH---HHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccC
Confidence 23578899999999864332 33 23344679999999999774432 1222 22234565 889999997432
Q ss_pred -ccchhHH-HHhcCCCeEEeccC----------------------------------CCcccc------------cccCc
Q 011010 257 -GGGALSA-VAATKSPVIFIGTG----------------------------------EHMDEF------------EVFDV 288 (495)
Q Consensus 257 -~g~~ls~-~~~~~~PI~fi~~G----------------------------------e~i~~l------------~~f~p 288 (495)
....+.. ....+.++.+...- +.++.. ..+.|
T Consensus 135 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~P 214 (638)
T 3j25_A 135 DLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFP 214 (638)
T ss_dssp CSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccc
Confidence 2222222 22233332211100 000000 12467
Q ss_pred cchhhhccCCCCcHHHHHHHHHhCC
Q 011010 289 KPFVSRLLGMGDWSGFMDKIHEVVP 313 (495)
Q Consensus 289 ~~~vS~l~G~Gdi~~L~e~i~~~~~ 313 (495)
..+.|++.+.| ++.|++.+.+.+|
T Consensus 215 v~~gSa~~~~G-v~~LLd~i~~~~p 238 (638)
T 3j25_A 215 LYHGSAKSNIG-IDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCSTTCCS-HHHHHHHHHHSCC
T ss_pred ccccccccCCC-chhHhhhhhcccc
Confidence 77889999999 9999999999886
No 244
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=8.9e-08 Score=88.89 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.|+ |........ + ..++++...... +..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~------~~~~~~~~~----~-----------t~~~~~~~~~i~-------------~~g 51 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFT------RNEFNLESK----S-----------TIGVEFATRSIQ-------------VDG 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH------HSCCCC-------C-----------CCSCEEEEEEEE-------------ETT
T ss_pred EEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------ccceeEEEEEEE-------------ECC
Confidence 468999999999999999999 432211110 0 001111000000 001
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHH---HHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~---~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.|+||||...... + .......++.+++|+|.+...... .....+.. ...+..+|+||+|...
T Consensus 52 ~~~~~~i~Dt~g~~~~~~-----~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 52 KTIKAQIWDTAGQERYRR-----I--TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp EEEEEEEEECSSGGGTTC-----C--CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEEEECCCchhhhh-----h--hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 134677899999642211 0 111223779999999987533211 11222221 1234688999999853
Q ss_pred Cccc----hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 256 KGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 256 ~~g~----~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
.... +.......+ .+...+|++.+.| +..+++.+.+.+
T Consensus 125 ~~~~~~~~a~~l~~~~~------------------~~~~d~Sal~~~~-i~~l~~~l~~~~ 166 (199)
T 2f9l_A 125 LRAVPTDEARAFAEKNN------------------LSFIETSALDSTN-VEEAFKNILTEI 166 (199)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111 111111111 1122378899999 999998887655
No 245
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.50 E-value=1.2e-07 Score=100.67 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---------cHHHHHHHHh-ccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---------~~~~~~~~f~-~~~~~~~vIlTK~D 252 (495)
++.+.|+||||.... .. .....+..+|.+++|+|++.+. .....+.... ..++...+++||+|
T Consensus 120 ~~~~~iiDtPGh~~f----~~---~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY----VT---NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CeEEEEEECCCcHHH----HH---HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 567899999997422 11 1233344899999999998752 2222222222 22443588999999
Q ss_pred CCC
Q 011010 253 GHA 255 (495)
Q Consensus 253 ~~~ 255 (495)
...
T Consensus 193 l~~ 195 (467)
T 1r5b_A 193 EPS 195 (467)
T ss_dssp STT
T ss_pred CCC
Confidence 853
No 246
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.42 E-value=1e-07 Score=98.34 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYY 124 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~ 124 (495)
.|+|||+|||||||+++.|...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999943
No 247
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.42 E-value=1.7e-06 Score=83.21 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=87.5
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEec---cC-Ccchh---HHHHHhhhhhcC------cceeccCCCC
Q 011010 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DT-FRAGA---FDQLKQNATKAK------IPFYGSYTES 166 (495)
Q Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs~---D~-~R~~a---~dqL~~~a~~~~------i~~~~~~~~~ 166 (495)
.+.++|.|. +|+||||++..|+..|+++|++|+..-+ -+ +..+. .|-+. ...... .++.. ....
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~-~~p~ 81 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL-NAYKHKFTAAEINLISF-NQAV 81 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH-HHTTTSSCHHHHCSEEE-SSSS
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH-HhcCCCCChhhEEEEEE-CCCC
Confidence 457899998 5999999999999999999999998642 11 11110 12221 111111 11111 0111
Q ss_pred Ch------------HHHHHHHHHHHhhcCCcEEEEeCCCCCcc--hHHHHHHHHHHHHHhcCCCEEEEEeeCCccc--cH
Q 011010 167 DP------------VRIAVEGVETFKKENCDLIIVDTSGRHKQ--EAALFEEMRQVSEATVNPDLVIFVMDSSIGQ--AA 230 (495)
Q Consensus 167 dp------------~~ia~~~l~~~~~~~~dvviIDTaG~~~~--~~~l~~el~~i~~~i~~~d~vllVvDa~~g~--~~ 230 (495)
.| .+...+.+.......||++|||+||-... .... ...++...+ ...+++|+++..+. ..
T Consensus 82 sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~--~~adla~~l--~~pviLV~~~~~~~i~~~ 157 (228)
T 3of5_A 82 APHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHT--TQLDLIKAL--QIPVLLVSAIKVGCINHT 157 (228)
T ss_dssp CHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSC--BHHHHHHHH--TCCEEEEEECSTTHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccch--hHHHHHHHc--CCCEEEEEcCCcchHHHH
Confidence 11 12233333331236899999999873211 1100 011233333 24588899987543 12
Q ss_pred HHHHHHH-hccCCceEEEEeCccCCCC-ccchhHHHH-hcCCCeE
Q 011010 231 FDQAQAF-KQSVSVGAVIVTKMDGHAK-GGGALSAVA-ATKSPVI 272 (495)
Q Consensus 231 ~~~~~~f-~~~~~~~~vIlTK~D~~~~-~g~~ls~~~-~~~~PI~ 272 (495)
......+ ....++.++|+|+++.... .......+. .++.|+.
T Consensus 158 ~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvL 202 (228)
T 3of5_A 158 LLTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCS 202 (228)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEE
Confidence 2222222 3346788999999987532 222333333 3576653
No 248
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.40 E-value=1.8e-07 Score=86.46 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..|+|+|++||||||+++.|+ |...... +.+ ..++.+...... ...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~------~~~~~~~----~~~-----------t~~~~~~~~~i~-------------~~g 75 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFT------RNEFNLE----SKS-----------TIGVEFATRSIQ-------------VDG 75 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHH------HSCCCCS----CCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECcCCCCHHHHHHHHh------cCCCCCC----CCC-----------ccceEEEEEEEE-------------ECC
Confidence 579999999999999999998 4321110 100 001111000000 000
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccH---HHHHHHHhc---cCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~---~~~~~~f~~---~~~~~~vIlTK~D~~~ 255 (495)
..+.+.+.||||...... + .......++.+++|.|.+..... ......+.. ...+..+|+||+|...
T Consensus 76 ~~~~~~i~Dt~g~~~~~~-~------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRA-I------TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSC-C------CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhh-h------hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 124456799999643221 0 11122367889999998743221 111222221 2234688999999753
Q ss_pred Cccc----hhHHHHhcCCCeEEeccCCCcccccccCccchhhhccCCCCcHHHHHHHHHh
Q 011010 256 KGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 311 (495)
Q Consensus 256 ~~g~----~ls~~~~~~~PI~fi~~Ge~i~~l~~f~p~~~vS~l~G~Gdi~~L~e~i~~~ 311 (495)
.... +.......+ .+...+|++.+.| +..+++.+.+.
T Consensus 149 ~~~~~~~~a~~l~~~~~------------------~~~ld~Sald~~~-v~~l~~~l~~~ 189 (191)
T 1oix_A 149 LRAVPTDEARAFAEKNG------------------LSFIETSALDSTN-VEAAFQTILTE 189 (191)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 2111 111111101 1122378899999 99999887654
No 249
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.40 E-value=5e-07 Score=98.52 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.++++.|.+|+||||++.+||..+++.|++|++|++|+.
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 456667999999999999999999999999999999986
No 250
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.39 E-value=7.8e-07 Score=85.49 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=38.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a 144 (495)
-.|.+.|++||||||++.++|.++.++|++|.+++.|++....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 4588889999999999999999999999999999999975544
No 251
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.36 E-value=1.3e-06 Score=89.77 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa 122 (495)
..|+|+|++|+||||+++.|.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHh
Confidence 458999999999999999987
No 252
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.35 E-value=3.7e-06 Score=93.74 Aligned_cols=128 Identities=23% Similarity=0.183 Sum_probs=68.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---HcCC---ceEEEeccCCcchhHHHHHhhhhh-cCcceeccCCCCChHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW---KPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAV 173 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~---~~G~---kVaIVs~D~~R~~a~dqL~~~a~~-~~i~~~~~~~~~dp~~ia~ 173 (495)
-+.|+|+|..++|||||+-+|..+-. +.|. +..+.|.+ + .||-+-.+-. ..+.++......
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~---~--~E~eRGITI~s~~~s~~~~~~~~------- 80 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWM---V--QEQERGITITSAAVTTFWKGSRG------- 80 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------CCEEEEEECCTTS-------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCCh---H--HHHHcCCeEEeeeEEEEeccCcC-------
Confidence 36799999999999999999986542 2221 11111210 0 1111111111 112221111100
Q ss_pred HHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--H-HHHHhccCCceEEEEeC
Q 011010 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--Q-AQAFKQSVSVGAVIVTK 250 (495)
Q Consensus 174 ~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~-~~~f~~~~~~~~vIlTK 250 (495)
..++|-+-||||||..... .|..+..++ +|..++||||..|-.+.. . -.+....+++ .+++||
T Consensus 81 ------~~~~~~iNlIDTPGHvDF~----~Ev~~aLr~---~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNK 146 (709)
T 4fn5_A 81 ------QYDNYRVNVIDTPGHVDFT----IEVERSLRV---LDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNK 146 (709)
T ss_dssp ------CSCCEEEEEECCCSCTTCH----HHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEEC
T ss_pred ------CCCCEEEEEEeCCCCcccH----HHHHHHHHH---hCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEcc
Confidence 0125778899999985433 344444444 599999999998754432 2 2333445665 899999
Q ss_pred ccCC
Q 011010 251 MDGH 254 (495)
Q Consensus 251 ~D~~ 254 (495)
+|..
T Consensus 147 iDr~ 150 (709)
T 4fn5_A 147 MDRQ 150 (709)
T ss_dssp SSST
T ss_pred cccc
Confidence 9974
No 253
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.34 E-value=5.6e-08 Score=100.26 Aligned_cols=121 Identities=11% Similarity=0.057 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++++|.|||||||++|.|........ +.+.++. .+.+|+....+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~-~~~~~~~-----------~~gtT~~~~~~~~-------------------- 210 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG-NVITTSY-----------FPGTTLDMIEIPL-------------------- 210 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT-CCCEEEE-----------CTTSSCEEEEEEC--------------------
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc-cceeecC-----------CCCeEEeeEEEEe--------------------
Confidence 3599999999999999999996544322 3344444 3344443332211
Q ss_pred cCCcEEEEeCCCCCcch---HHHH-HHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQE---AALF-EEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~---~~l~-~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+..+.+|||||+.... ..+. +++..+... ...+.+++++|+... .........+.....+..+++||.|...
T Consensus 211 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~-~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 211 -ESGATLYDTPGIINHHQMAHFVDARDLKIITPK-REIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp -STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCS-SCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred -CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcc-cccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 2347999999985432 1111 112222111 377899999998421 1111000111111123589999999854
Q ss_pred C
Q 011010 256 K 256 (495)
Q Consensus 256 ~ 256 (495)
+
T Consensus 289 ~ 289 (369)
T 3ec1_A 289 R 289 (369)
T ss_dssp E
T ss_pred c
Confidence 3
No 254
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.33 E-value=1.7e-07 Score=96.57 Aligned_cols=122 Identities=10% Similarity=0.031 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
..++++|.+||||||++|.|.........+...++. .+.+|+....+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~-----------~~gtT~~~~~~~~-------------------- 209 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH-----------FPGTTLDLIDIPL-------------------- 209 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC-----------CC----CEEEEES--------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCC-----------CCCeecceEEEEe--------------------
Confidence 369999999999999999999554221122344444 3444544332211
Q ss_pred cCCcEEEEeCCCCCcch---HHHH-HHHHHHHHHhcCCCEEEEEeeCCcc--ccHHHHHHHHhccCCceEEEEeCccCCC
Q 011010 182 ENCDLIIVDTSGRHKQE---AALF-EEMRQVSEATVNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 182 ~~~dvviIDTaG~~~~~---~~l~-~el~~i~~~i~~~d~vllVvDa~~g--~~~~~~~~~f~~~~~~~~vIlTK~D~~~ 255 (495)
+..+.+|||||+.... ..+. +++..+.. ....+.+++++|+... .........+.....+..+++||.|...
T Consensus 210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~-~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITP-TKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSC-SSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhcc-ccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 2247999999985432 1111 12222221 2377889999998421 1111000111111123589999999864
Q ss_pred C
Q 011010 256 K 256 (495)
Q Consensus 256 ~ 256 (495)
+
T Consensus 288 ~ 288 (368)
T 3h2y_A 288 R 288 (368)
T ss_dssp E
T ss_pred c
Confidence 4
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.28 E-value=1.3e-07 Score=88.40 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G 129 (495)
+++|+|++|+||||++.+|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 589999999999999999999988556
No 256
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.26 E-value=6.5e-06 Score=80.39 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=81.3
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEec-----c-CCcchhHHHHHhhhhhcC-cceeccCCCCC-----
Q 011010 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA-----D-TFRAGAFDQLKQNATKAK-IPFYGSYTESD----- 167 (495)
Q Consensus 101 ~~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~-----D-~~R~~a~dqL~~~a~~~~-i~~~~~~~~~d----- 167 (495)
.+.++|+|.. |+||||++..|+.+|+++|++|...-+ . .+ .....+...+.... ...+.-.....
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~--~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa 103 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD--DDLAEVGRLAGVTQLAGLARYPQPMAPAAAA 103 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC--CHHHHHHHHHCCCEEEEEEECSSSSCHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC--HHHHHHHHHcCCCCCCCCeeECCCCChHHHH
Confidence 4678999987 999999999999999999999998752 1 11 11222222221110 01111000001
Q ss_pred --------hHHHHHHHHHHHhhcCCcEEEEeCCCCCcc--hHH--HHHHHHHHHHHhcCCCEEEEEeeCCccc--cHHHH
Q 011010 168 --------PVRIAVEGVETFKKENCDLIIVDTSGRHKQ--EAA--LFEEMRQVSEATVNPDLVIFVMDSSIGQ--AAFDQ 233 (495)
Q Consensus 168 --------p~~ia~~~l~~~~~~~~dvviIDTaG~~~~--~~~--l~~el~~i~~~i~~~d~vllVvDa~~g~--~~~~~ 233 (495)
..+...+.+..+ ...||++|||+||-... .+. .. .++...+ ...+++|+|+..+. .....
T Consensus 104 ~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~---adla~~l--~~pVILV~~~~~g~i~~~~lt 177 (251)
T 3fgn_A 104 EHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTL---RDVAVDV--AAAALVVVTADLGTLNHTKLT 177 (251)
T ss_dssp HHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEH---HHHHHHT--TCEEEEEECSSTTHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchH---HHHHHHc--CCCEEEEEcCCCccHHHHHHH
Confidence 112233333333 35899999999874321 111 11 1233333 45689999987542 12222
Q ss_pred HHHH-hccCCceEEEEeCccC
Q 011010 234 AQAF-KQSVSVGAVIVTKMDG 253 (495)
Q Consensus 234 ~~~f-~~~~~~~~vIlTK~D~ 253 (495)
...+ ....++.++|+||+..
T Consensus 178 ~~~l~~~g~~i~GvIlN~v~~ 198 (251)
T 3fgn_A 178 LEALAAQQVSCAGLVIGSWPD 198 (251)
T ss_dssp HHHHHHTTCCEEEEEEEEECS
T ss_pred HHHHHhCCCCEEEEEEECCCC
Confidence 2333 3356789999999954
No 257
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.25 E-value=8.7e-07 Score=92.02 Aligned_cols=104 Identities=15% Similarity=0.017 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCC-hHHHHHHHHHHHh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD-PVRIAVEGVETFK 180 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~d-p~~ia~~~l~~~~ 180 (495)
..|+|+|+|||||||++|.|+ |.++ .++. .+.+|..-.. +...-.+ .............
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Lt------g~~~-~~~~-----------~p~tTi~p~~--g~v~v~~~r~~~l~~~~~p~~ 82 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLT------NSQA-SAEN-----------FPFCTIDPNE--SRVPVPDERFDFLCQYHKPAS 82 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHH------C-------------------------CCSE--EEEECCCHHHHHHHHHHCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------CCccccCcee--EEEEECCccceeeccccCccc
Confidence 459999999999999999999 7665 3333 2333321110 0000011 0110000000000
Q ss_pred hcCCcEEEEeCCCCCcchHHHHHHH-HHHHHHhcCCCEEEEEeeCCc
Q 011010 181 KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 181 ~~~~dvviIDTaG~~~~~~~l~~el-~~i~~~i~~~d~vllVvDa~~ 226 (495)
.-...+.|+||||....... .+.+ ..+...+..+|.+++|+|++.
T Consensus 83 ~~~~~i~lvDtpGl~~~as~-~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 83 KIPAFLNVVDIAGLVKGAHN-GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EECCEEEEEECCC------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccEEEECCCcccccch-hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 01346899999998643321 1222 233444558999999999963
No 258
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.25 E-value=1.8e-05 Score=76.86 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=83.0
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCceEEEe-----ccCC--cchhHHHH----Hhhh-hh--cC-cceeccCC
Q 011010 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVC-----ADTF--RAGAFDQL----KQNA-TK--AK-IPFYGSYT 164 (495)
Q Consensus 101 ~~vI~ivG~-~GvGKTTl~~kLa~~l~~~G~kVaIVs-----~D~~--R~~a~dqL----~~~a-~~--~~-i~~~~~~~ 164 (495)
.+.++|+|. +|||||+++..|+..|+++|.+|+..- ++.. +......+ ...+ .. .. .|+.....
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p 100 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV 100 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence 467899998 599999999999999999999999875 2211 11111222 1111 00 00 11111000
Q ss_pred ----------C---CChHHHHHHHHHHHhhcCCcEEEEeCCCCCcc---hHHHHHHHHHHHHHhcCCCEEEEEeeCCccc
Q 011010 165 ----------E---SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATVNPDLVIFVMDSSIGQ 228 (495)
Q Consensus 165 ----------~---~dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~---~~~l~~el~~i~~~i~~~d~vllVvDa~~g~ 228 (495)
. ....+.+.+.+..+ ...||++|||+||-... +.... .++...+ ...+++|+++..+.
T Consensus 101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~---adlA~~l--~~pVILV~~~~lg~ 174 (242)
T 3qxc_A 101 SAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENM---LDFALKL--KAKMLLISHDNLGL 174 (242)
T ss_dssp SCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBH---HHHHHHH--TCEEEEEECCSTTH
T ss_pred CChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchH---HHHHHHc--CCCEEEEEcCCCcH
Confidence 0 01122334444443 35899999999874321 11111 2233333 34589999997652
Q ss_pred --cHHHHHHHHh-ccCCceEEEEeCccCCC
Q 011010 229 --AAFDQAQAFK-QSVSVGAVIVTKMDGHA 255 (495)
Q Consensus 229 --~~~~~~~~f~-~~~~~~~vIlTK~D~~~ 255 (495)
........+. ..++ .++|+|+++...
T Consensus 175 i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 175 INDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 1222333443 3467 899999998653
No 259
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=92.20 Aligned_cols=142 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~~ 183 (495)
++|+|++|||||||++.|+ |..+.-.+.... .+..++..+.+...... -.
T Consensus 45 vaLvG~nGaGKSTLln~L~------G~~l~g~~~~~~--------~~~~~~~~i~~v~Q~~~----------------l~ 94 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLF------NTKFEGEPATHT--------QPGVQLQSNTYDLQESN----------------VR 94 (427)
T ss_dssp EEEECSTTSSSHHHHHHHH------TSCC-------C--------CSSCEEEEEEEEEEC------------------CE
T ss_pred EEEECCCCCCHHHHHHHHh------CccccCCcCCCC--------CccceEeeEEEEeecCc----------------cc
Confidence 9999999999999999999 764321111000 01111222222211110 01
Q ss_pred CcEEEEeCCCCCcc-h-----HHHHHHH----HHHHHHh----------cCC--C-EEEEEeeCCccccH--HHHHHHHh
Q 011010 184 CDLIIVDTSGRHKQ-E-----AALFEEM----RQVSEAT----------VNP--D-LVIFVMDSSIGQAA--FDQAQAFK 238 (495)
Q Consensus 184 ~dvviIDTaG~~~~-~-----~~l~~el----~~i~~~i----------~~~--d-~vllVvDa~~g~~~--~~~~~~f~ 238 (495)
..+.++||+|+... + ..+...+ ..+.... ..+ | .++||+|+..+... ...++.+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 36789999997532 1 1111112 1111111 011 1 47788888765433 44566665
Q ss_pred ccCCceEEEEeCccCCCCcc--chhH----HHHhcCCCeEEecc
Q 011010 239 QSVSVGAVIVTKMDGHAKGG--GALS----AVAATKSPVIFIGT 276 (495)
Q Consensus 239 ~~~~~~~vIlTK~D~~~~~g--~~ls----~~~~~~~PI~fi~~ 276 (495)
...+ .++|+||+|..+... .... .+...|+||.|++.
T Consensus 175 ~~~~-vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 175 SKVN-IIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCSE-EEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hCCC-EEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 4444 589999999865421 1111 23346899999984
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.20 E-value=1.3e-05 Score=75.10 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.+++|+|++|+||||++..++..+...+.+|.+++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 479999999999999999999888887889999998763
No 261
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.19 E-value=1.4e-05 Score=79.44 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 68 GHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 68 ~~~~~~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.+++ +.+.+++.+.+..+++... ....+..|+|+|+|||||||++..|+..+ +.....|++|.+|.
T Consensus 6 ~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 6 NFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFKQ 71 (287)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHHT
T ss_pred CCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhHH
Confidence 3444 6678888888888887532 23346789999999999999999998654 22567889998874
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.17 E-value=1.9e-05 Score=74.93 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+++|+|+||+||||++..++..+.+.|.+|.+++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 47999999999999999999999888899999999875
No 263
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.16 E-value=5e-06 Score=81.08 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|+|+|+|||||||++..|+.+|...|+.+.+++.|.+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 56899999999999999999999998889888888888655
No 264
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.14 E-value=4.8e-06 Score=76.04 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~ 137 (495)
..++|+|++|+||||++..++..+. ..|..+..++.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4699999999999999999999997 67888888776
No 265
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.11 E-value=3.2e-06 Score=96.05 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccccHHH--HHH-HHhccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~~~~~--~~~-~f~~~~~~~~vIlTK~D~~ 254 (495)
++.+.|+||||....... ....+..+|.+++|+|++.+..... ... .....++ ..+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~-------~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSE-------VTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHH-------HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHH-------HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcc
Confidence 577899999998653322 2223337899999999987643322 122 2223344 48999999974
No 266
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.11 E-value=1.8e-05 Score=73.92 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+++|+|++|+||||++..++. ..|.+|.+++.+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 4799999999999999999997 5588999999875
No 267
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.09 E-value=3.3e-06 Score=83.77 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+..++++|.|||||||++|.|. |.+++.++. .+.+|+....+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~------~~~~~~~~~-----------~~g~T~~~~~~~------------------- 162 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLA------KKNIAKTGD-----------RPGITTSQQWVK------------------- 162 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH------TSCCC-----------------------CCEE-------------------
T ss_pred CCceEEEEecCCCchHHHHHHHh------cCceeecCC-----------CCCeeeeeEEEE-------------------
Confidence 35679999999999999999999 888776665 444444322111
Q ss_pred hhcCCcEEEEeCCCCCcc
Q 011010 180 KKENCDLIIVDTSGRHKQ 197 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~ 197 (495)
-+..+.|+||||+...
T Consensus 163 --~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 163 --VGKELELLDTPGILWP 178 (282)
T ss_dssp --ETTTEEEEECCCCCCS
T ss_pred --eCCCEEEEECcCcCCC
Confidence 1346899999998643
No 268
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.09 E-value=1.5e-05 Score=79.72 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa 122 (495)
..-.|+|+|++|||||||++.|+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999998
No 269
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.04 E-value=1e-05 Score=78.68 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=46.3
Q ss_pred CCCEEEEEeeCCcc--ccHHH---HHHHHh----ccCCceEEEEeCccCCCCccchhHHHHhcCCCeEEeccCCCccccc
Q 011010 214 NPDLVIFVMDSSIG--QAAFD---QAQAFK----QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE 284 (495)
Q Consensus 214 ~~d~vllVvDa~~g--~~~~~---~~~~f~----~~~~~~~vIlTK~D~~~~~g~~ls~~~~~~~PI~fi~~Ge~i~~l~ 284 (495)
.+|.+++|+|++.. ..... ....+. ....+..+|.||+|...... .+.. +.+..-.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~-------------~~~~~~~ 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDA-------------HTFALSK 226 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHH-------------HHHHHTS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHH-------------HHHHHhc
Confidence 37999999998754 22111 112221 11233589999999743211 1111 1110000
Q ss_pred ccCccchhhhccCCCCcHHHHHHHHHhC
Q 011010 285 VFDVKPFVSRLLGMGDWSGFMDKIHEVV 312 (495)
Q Consensus 285 ~f~p~~~vS~l~G~Gdi~~L~e~i~~~~ 312 (495)
...+...+|+..|.| ++.+++++.+.+
T Consensus 227 ~~~~~~e~SAk~g~g-v~elf~~l~~~l 253 (255)
T 3c5h_A 227 KNLQVVETSARSNVN-VDLAFSTLVQLI 253 (255)
T ss_dssp SSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCC-HHHHHHHHHHHh
Confidence 123456689999999 999999887653
No 270
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.02 E-value=5.4e-05 Score=77.87 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee--ccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~--~~~~~~dp~~ia~~~l~~ 178 (495)
..++.|.|+||+||||++..++..+++.|.+|++++++.-. +++ .+.+.+++.- ......+ .+-+.+.+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~----~~~--~a~~~g~d~~~l~i~~~~~-~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL----DPV--YARALGVNTDELLVSQPDN-GEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHH--HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh----hHH--HHHHcCCCHHHceeecCCc-HHHHHHHHHH
Confidence 34789999999999999999999999889999999997421 111 1222232210 0011112 2333333443
Q ss_pred H-hhcCCcEEEEeCCCCC
Q 011010 179 F-KKENCDLIIVDTSGRH 195 (495)
Q Consensus 179 ~-~~~~~dvviIDTaG~~ 195 (495)
+ ...++++||||..+..
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 3 2357999999997754
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.02 E-value=6e-06 Score=76.59 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.+++++|++|+||||++..++..+..+|.+|.++.. |. |.+. ....++.++...... ..++.++ ++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~----~~i~s~~g~~~~~~~-~~~~~~~----~~~~ 73 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHS----TMIVSHSGNGVEAHV-IERPEEM----RKYI 73 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CC----CEECC----CEECEE-ESSGGGG----GGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCc----ccEEecCCCceeeEE-ECCHHHH----HHHh
Confidence 478899999999999999999999888999998864 22 2110 111222222211100 0111111 1111
Q ss_pred hhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc---cHHHHHHHHhccCCceEEEEeCccCCCC
Q 011010 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 180 ~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~---~~~~~~~~f~~~~~~~~vIlTK~D~~~~ 256 (495)
. .++|+|+||.+.+... ++.+.+..+.+. +.. +++.+.... ........+..... -++|++....
T Consensus 74 ~-~~~dvviIDE~Q~~~~--~~~~~l~~l~~~----~~~-Vi~~Gl~~~f~~~~f~~~~~ll~~ad----~v~~l~~ic~ 141 (184)
T 2orw_A 74 E-EDTRGVFIDEVQFFNP--SLFEVVKDLLDR----GID-VFCAGLDLTHKQNPFETTALLLSLAD----TVIKKKAVCH 141 (184)
T ss_dssp C-TTEEEEEECCGGGSCT--THHHHHHHHHHT----TCE-EEEEEESBCTTSCBCHHHHHHHHHCS----EEEECCBCCT
T ss_pred c-CCCCEEEEECcccCCH--HHHHHHHHHHHC----CCC-EEEEeeccccccCCccchHHHHHHhh----heEEeeeecC
Confidence 1 3689999999887532 244445444332 322 222222111 11111111111111 1255554432
Q ss_pred -cc---chhHHHHhcCCCeEEeccCCCcccc
Q 011010 257 -GG---GALSAVAATKSPVIFIGTGEHMDEF 283 (495)
Q Consensus 257 -~g---~~ls~~~~~~~PI~fi~~Ge~i~~l 283 (495)
.| +..+.....+.|+.+||.++....+
T Consensus 142 ~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~ 172 (184)
T 2orw_A 142 RCGEYNATLTLKVAGGEEEIDVGGQEKYIAV 172 (184)
T ss_dssp TTCCSCBCEEEECSSCSCSCCCCSTTTEEEE
T ss_pred CCCCeeceeEEEEcCCCCEEEECCCCcEEEc
Confidence 33 4455555557788888877765443
No 272
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=8.5e-05 Score=76.06 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..++.|+|+||+||||++..++..++..|.+|+.++.+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 358999999999999999999999998899999998853
No 273
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.99 E-value=6e-05 Score=75.75 Aligned_cols=172 Identities=18% Similarity=0.233 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH-Hhh----hhhcCcceeccCCCCChHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL-KQN----ATKAKIPFYGSYTESDPVRIAVEGV 176 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL-~~~----a~~~~i~~~~~~~~~dp~~ia~~~l 176 (495)
.+++|+|+.||||||+++.|+... .|++++|+.+|.-...--.++ ... .+-.+..+.+ ....+........+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc-~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICC-SRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEE-CTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEE-cccHHHHHHHHHHH
Confidence 579999999999999999999653 588999999874221100000 000 0000111111 11122222222222
Q ss_pred HHHhhc--CCcEEEEeCCCCCcchHHHHHHH---HHHHHHhcCCCEEEEEeeCCccccHHHH-HHHHhccCCceEEEEeC
Q 011010 177 ETFKKE--NCDLIIVDTSGRHKQEAALFEEM---RQVSEATVNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTK 250 (495)
Q Consensus 177 ~~~~~~--~~dvviIDTaG~~~~~~~l~~el---~~i~~~i~~~d~vllVvDa~~g~~~~~~-~~~f~~~~~~~~vIlTK 250 (495)
...... .++++++++.|..... .+...+ ....... ..+.++-++|+......... .....+......+|+||
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~-~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRY-LLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHE-EEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeE-EECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 112223 3499999999986433 222211 1222222 45677888998643322211 11112223446788899
Q ss_pred ccCCCCccchhHHHHh--cCCCeEEeccCC
Q 011010 251 MDGHAKGGGALSAVAA--TKSPVIFIGTGE 278 (495)
Q Consensus 251 ~D~~~~~g~~ls~~~~--~~~PI~fi~~Ge 278 (495)
.|.......+...+.. .+.+|.+++.|.
T Consensus 160 ~dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 160 TDVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp TTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred cccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 9986432233333322 467788887663
No 274
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.99 E-value=4.5e-05 Score=78.13 Aligned_cols=88 Identities=22% Similarity=0.219 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC-CcchhHHHHHhhhhhcCccee--ccCCCCChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~-~R~~a~dqL~~~a~~~~i~~~--~~~~~~dp~~ia~~~l~ 177 (495)
..++.|.|+||+||||++..++..+++.|.+|++++.+. +.+. .+.+.+++.- .... .+..+.+.+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~-------~a~~~g~~~~~l~i~~-~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-------YARKLGVDIDNLLCSQ-PDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCCGGGCEEEC-CSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH-------HHHHcCCChhheeeeC-CCCHHHHHHHHH
Confidence 347999999999999999999999999899999999853 2221 1222222210 0011 112233333333
Q ss_pred HH-hhcCCcEEEEeCCCCCc
Q 011010 178 TF-KKENCDLIIVDTSGRHK 196 (495)
Q Consensus 178 ~~-~~~~~dvviIDTaG~~~ 196 (495)
.+ ...++++|+||+.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCC
T ss_pred HHHhccCCCEEEEcCHHHhc
Confidence 33 24579999999987643
No 275
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.98 E-value=3.8e-05 Score=75.58 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=64.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhhc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~~ 182 (495)
.++|+|++|||||||++.|+..+.-..-.+.+-..|.- ....+..+.+..... .-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~---------~~~~~~~i~~v~q~~----------------~~ 58 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP---------KTVEIKAIGHVIEEG----------------GV 58 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CC---------CCCSCCEEEESCC--------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC---------cceeeeeeEEEeecC----------------CC
Confidence 68999999999999999999765432222222111110 001111222111100 01
Q ss_pred CCcEEEEeCCCCCcc------hHHHHHHH-----HHHHHHh----------cCCCEEEEEeeCC-ccccH--HHHHHHHh
Q 011010 183 NCDLIIVDTSGRHKQ------EAALFEEM-----RQVSEAT----------VNPDLVIFVMDSS-IGQAA--FDQAQAFK 238 (495)
Q Consensus 183 ~~dvviIDTaG~~~~------~~~l~~el-----~~i~~~i----------~~~d~vllVvDa~-~g~~~--~~~~~~f~ 238 (495)
...+.++||+|+... ...+...+ ......+ ..++.+++++|.. .+-+. ...++.+.
T Consensus 59 ~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~ 138 (270)
T 3sop_A 59 KMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS 138 (270)
T ss_dssp CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH
T ss_pred cCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH
Confidence 346789999996321 11122222 1111211 1357788999965 44443 34556666
Q ss_pred ccCCceEEEEeCccCCCC
Q 011010 239 QSVSVGAVIVTKMDGHAK 256 (495)
Q Consensus 239 ~~~~~~~vIlTK~D~~~~ 256 (495)
+.. ...+|+||+|..+.
T Consensus 139 ~~~-~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 139 KVV-NIIPVIAKADTMTL 155 (270)
T ss_dssp TTS-EEEEEETTGGGSCH
T ss_pred hcC-cEEEEEeccccCCH
Confidence 653 45899999998654
No 276
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.97 E-value=9.2e-06 Score=89.03 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=43.7
Q ss_pred CCcEEEEeCCCCCcc-----hHHHHHHHHHHH-HHhcCC-CEEEEEeeCCcc---ccHHHHHHHHhccCCceEEEEeCcc
Q 011010 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVS-EATVNP-DLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMD 252 (495)
Q Consensus 183 ~~dvviIDTaG~~~~-----~~~l~~el~~i~-~~i~~~-d~vllVvDa~~g---~~~~~~~~~f~~~~~~~~vIlTK~D 252 (495)
..+++|+|+||+... +......+..+. ..+..+ ..+++|+++... +.+...+..+......+++|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 368999999986432 222233333333 333333 566677776532 3455566666555556899999999
Q ss_pred CCCCc
Q 011010 253 GHAKG 257 (495)
Q Consensus 253 ~~~~~ 257 (495)
....+
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 87654
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.96 E-value=0.0014 Score=68.88 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~ 139 (495)
..+++|+|+||+||||++..++..++. .|.+|++++.+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 358999999999999999999999886 588999999864
No 278
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.91 E-value=2.5e-06 Score=88.62 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa 122 (495)
..+++|+|+||||||||+|.|+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999999
No 279
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.91 E-value=7.3e-05 Score=76.34 Aligned_cols=88 Identities=22% Similarity=0.181 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC-CcchhHHHHHhhhhhcCccee--ccCCCCChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~-~R~~a~dqL~~~a~~~~i~~~--~~~~~~dp~~ia~~~l~ 177 (495)
..++.|+|+||+||||++..++..+++.|.+|+.++.+. +.+. .+.+.++..- ......+ .+-+.+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-------~a~~lG~~~~~l~i~~~~~-~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-------YAKKLGVDTDSLLVSQPDT-GEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHTTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-------HHHHcCCCHHHeEEecCCC-HHHHHHHHH
Confidence 347999999999999999999999998899999999864 2221 1233332210 0011112 222222222
Q ss_pred HH-hhcCCcEEEEeCCCCCc
Q 011010 178 TF-KKENCDLIIVDTSGRHK 196 (495)
Q Consensus 178 ~~-~~~~~dvviIDTaG~~~ 196 (495)
.+ ...+++++|||.+....
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCC
T ss_pred HHHhcCCCCEEEEcChHhhc
Confidence 22 23479999999977543
No 280
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.86 E-value=7.7e-05 Score=78.01 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHH
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa 122 (495)
.+..-.|+|+|++|||||||++.|+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3444568999999999999999999
No 281
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.83 E-value=0.00019 Score=70.82 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~ 139 (495)
.+++|+|+||+||||++..++..+... |.+|.+++.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 479999999999999999999998865 88999998764
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.82 E-value=0.00027 Score=71.87 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccC-CCCChH--HHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY-TESDPV--RIAVEGVET 178 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~-~~~dp~--~ia~~~l~~ 178 (495)
..++|+|+||+||||++..+|..++..|.+|++++.+.-...-...+. +...+++..... ..-+.. ..+..+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rll--s~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRAL--SDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHH--HHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHH--HHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999989999999999643221112111 111122211100 011111 112233333
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC---cc--------ccHH---HHHHHHhccCCce
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS---IG--------QAAF---DQAQAFKQSVSVG 244 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~---~g--------~~~~---~~~~~f~~~~~~~ 244 (495)
+. ..++.|.|+|+.. -..+...++++... .++.-++|||.- .+ ++.. ..++.+....++.
T Consensus 125 l~--~~~l~I~d~~~~s--i~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vp 198 (338)
T 4a1f_A 125 LS--QKKLFFYDKSYVR--IEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIP 198 (338)
T ss_dssp HH--HSCEEEECCTTCC--HHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSC
T ss_pred Hh--cCCeEEeCCCCCc--HHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCe
Confidence 32 3567888998764 22343334433322 236788899952 11 1122 2334444555666
Q ss_pred EEEEeCc
Q 011010 245 AVIVTKM 251 (495)
Q Consensus 245 ~vIlTK~ 251 (495)
+++++.+
T Consensus 199 Vi~lsQl 205 (338)
T 4a1f_A 199 IIALVQL 205 (338)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7777665
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.81 E-value=2.1e-05 Score=72.17 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
..+++|+|++||||||++.+|+.+|..+|++|+++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999999999999998764
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.78 E-value=0.0021 Score=67.35 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHh--hhhhcCcceeccCC-CCChH--HHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQ--NATKAKIPFYGSYT-ESDPV--RIAVE 174 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~--~a~~~~i~~~~~~~-~~dp~--~ia~~ 174 (495)
..+++|+|+||+||||++..+|...+. .|.+|++++...- .+|+.. .+...+++...... .-++. .....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~----~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~ 275 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP----AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVD 275 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC----HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC----HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHH
Confidence 358999999999999999999999886 5899999998632 122221 12233333211100 01111 11233
Q ss_pred HHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 175 ~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
++..+. ...+.+.|+|+... ..+...++++.... .+ -++|||.-
T Consensus 276 a~~~l~--~~~l~i~d~~~~s~--~~l~~~~~~l~~~~-~~--~lIvID~l 319 (444)
T 2q6t_A 276 VASRLS--EAPIYIDDTPDLTL--MEVRARARRLVSQN-QV--GLIIIDYL 319 (444)
T ss_dssp HHHHHH--TSCEEEECCTTCBH--HHHHHHHHHHHHHS-CC--CEEEEECG
T ss_pred HHHHHh--cCCEEEECCCCCCH--HHHHHHHHHHHHHc-CC--CEEEEcCh
Confidence 444443 34677778876532 23444444444333 34 46777863
No 285
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.77 E-value=2.5e-05 Score=85.09 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa 133 (495)
+..+|+|+|+|||||||++|.|+ |.+++
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~------g~~~~ 64 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLA------GKKKG 64 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHT------TCSSC
T ss_pred CCcEEEEECCCCCCHHHHHHhHc------CCCCc
Confidence 34679999999999999999999 77654
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.77 E-value=6.5e-05 Score=71.43 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~ 139 (495)
..+++|+|++|||||||+..++.... ..+..+.+++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 34899999999999999999996555 5677788877654
No 287
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.76 E-value=5.3e-05 Score=72.61 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=59.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
..++++.|++|+||||++..++..+..+|.+|.++.. |. | +. ...+.+.++.+..... ... .+.++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~-~~~----~~i~~~ 80 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEV-ESA----PEILNY 80 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEE-SST----HHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCcccccc-CCH----HHHHHH
Confidence 4688899999999999999999999999999999954 33 3 21 1234455543322111 111 122222
Q ss_pred Hh----hcCCcEEEEeCCCCCcchHHHHHHHHHHH
Q 011010 179 FK----KENCDLIIVDTSGRHKQEAALFEEMRQVS 209 (495)
Q Consensus 179 ~~----~~~~dvviIDTaG~~~~~~~l~~el~~i~ 209 (495)
+. ...+|+|+||-+-.... +..+.+..+.
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~~--~~ve~l~~L~ 113 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFDD--RICEVANILA 113 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSCT--HHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEecCccCcH--HHHHHHHHHH
Confidence 22 23589999999876532 3444444443
No 288
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.74 E-value=0.00026 Score=71.03 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceecc------CCCCChHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVEG 175 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~------~~~~dp~~ia~~~ 175 (495)
.+++|+|+||+||||++..+|...+.+|.+|++++...-...-...+.. ...+++.... .+..+... ...+
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~--~~~~i~~~~l~~~~~~l~~~~~~~-l~~a 145 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIV--TAGSINAQKIKAARRDFASEDWGK-LSMA 145 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHH--HHTTCCHHHHHSCHHHHCSSCHHH-HHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHH--HHcCCCHHHHhcCCCCCCHHHHHH-HHHH
Confidence 4799999999999999999999998888999999986322111222211 1122321110 11222222 2233
Q ss_pred HHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 176 l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
...+. ...+.+.|+|+.. -..+...++++.... .++..++|||.-
T Consensus 146 ~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~-~~~~~lVVID~l 190 (315)
T 3bh0_A 146 IGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKN-PGKRVIVMIDYL 190 (315)
T ss_dssp HHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTS-SSCCEEEEEECG
T ss_pred HHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhc-CCCCeEEEEeCc
Confidence 33332 4577888888753 234444444443332 444348889974
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.74 E-value=0.0018 Score=68.10 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec----c--CCCCChHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG----S--YTESDPVRIAVE 174 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~----~--~~~~dp~~ia~~ 174 (495)
...++|+|+||+||||++..+|...+.+|.+|++++..--...-...+. +...+++... . .+..+.. ....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~--~~~~~i~~~~l~~g~~~l~~~~~~-~l~~ 273 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDWG-KLSM 273 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH--HHHSCCCHHHHHHTGGGTCCSCHH-HHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcccCCCCHHHHH-HHHH
Confidence 3489999999999999999999999988999999999743221122111 2222332111 0 1222222 2233
Q ss_pred HHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 175 ~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
+...+. ..++.|.|+|+.. -..+...++++.... .++..++|||.-
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~-~~~~~lIVID~L 319 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKN-PGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHS-CSSCEEEEEECS
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHh-CCCCeEEEEecH
Confidence 444442 4678888988753 234555555554444 566558889974
No 290
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.73 E-value=0.00019 Score=69.41 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcch
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~ 143 (495)
..+.+|+|+|+|||||||++..|+..+ +..+.+++.|.+|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 346789999999999999999999655 335678899988753
No 291
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=6.3e-05 Score=75.72 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc------CCceEEEeccC-Ccc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT-FRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~------G~kVaIVs~D~-~R~ 142 (495)
..++.|+|+||+||||++..++...+.. +.+|+.++.+. |++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~ 155 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRW 155 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH
Confidence 3489999999999999999999876654 77899999864 554
No 292
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.73 E-value=0.00019 Score=72.93 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCceEEEeccC-Ccc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT-FRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~------~G~kVaIVs~D~-~R~ 142 (495)
..++.|+|+||+||||++..++...+. .+.+|+.++.+. |++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~ 170 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP 170 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCH
Confidence 458999999999999999999987544 478899998864 444
No 293
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=9.7e-05 Score=69.93 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH------cCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~------~G~kVaIVs~D~ 139 (495)
.+++|+|++|+||||++..++..... .+..+..++.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 48999999999999999999986432 256788787754
No 294
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.72 E-value=0.00015 Score=77.90 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.+.+|+++|+|||||||++.+|+.+|.-.+.++.+++.|.+|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4578999999999999999999999988889999999988765
No 295
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=0.00046 Score=71.70 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH------cCCceEEEecc-CCcc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD-TFRA 142 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~------~G~kVaIVs~D-~~R~ 142 (495)
.++.|+|++|+||||++..|+..... .+.++..++.. .+++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~ 226 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP 226 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH
Confidence 48999999999999999988755442 34678878774 3544
No 296
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.71 E-value=8.5e-05 Score=66.38 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
..++|+|++|+||||++..++..+...|+++..++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 469999999999999999999998877888877776
No 297
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.70 E-value=0.00016 Score=67.85 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~------~G~kVaIVs~D 138 (495)
..+++|+|++||||||++..|+..+.. .+..+..++.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 358999999999999999999976543 23345555553
No 298
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.67 E-value=0.00021 Score=68.93 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
++.+|+|.|++||||||.+..|+.+|...|.++.++...|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 3568999999999999999999999999999854554444
No 299
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.66 E-value=0.00015 Score=67.67 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe--ccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs--~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
..+++++|+.|+||||.+..++..+..+|++|.++. .|+ |.+. ....++.++....... .++. +.++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~-~~~~----~i~~~ 77 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAI-KNSR----EILKY 77 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEE-SSST----HHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEee-CCHH----HHHHH
Confidence 458899999999999999999999999999999996 343 2221 1223344432211111 1111 22222
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHH
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVS 209 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~ 209 (495)
+. ..+|+|+||.+.+... +..+.++.+.
T Consensus 78 ~~-~~~dvViIDEaqfl~~--~~v~~l~~l~ 105 (191)
T 1xx6_A 78 FE-EDTEVIAIDEVQFFDD--EIVEIVNKIA 105 (191)
T ss_dssp CC-TTCSEEEECSGGGSCT--HHHHHHHHHH
T ss_pred Hh-ccCCEEEEECCCCCCH--HHHHHHHHHH
Confidence 22 3589999999888643 2344454443
No 300
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.65 E-value=0.0001 Score=68.99 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++.+|+|+|++||||||++..|+..+...|..+..|..|.|-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 356899999999999999999999988667788999988654
No 301
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.63 E-value=3.2e-05 Score=75.84 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
..++++|.|||||||++|.|. |.++.-+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~------~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK------GKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHh------cccccccCC
Confidence 369999999999999999999 766654443
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.56 E-value=0.00016 Score=65.06 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
|.+|+|+|+|||||||++..|+.. .....+++.|.+|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHHH
Confidence 357999999999999999999952 24567788877654
No 303
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.55 E-value=0.00019 Score=66.87 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++.+|+|+|++||||||++..|+..+...|.+|.+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 356899999999999999999999998888899999888754
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=0.00022 Score=64.31 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
..+|+|+|++||||||++..|+..+ | ..+++.|..+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~~ 44 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLHP 44 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccccc
Confidence 4589999999999999999999665 3 45678876653
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.55 E-value=6.5e-05 Score=68.78 Aligned_cols=43 Identities=40% Similarity=0.527 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++.+|+|+|++||||||++..|+.++...|.++.+++.|.+|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~ 54 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWART 54 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHH
Confidence 3568999999999999999999999998899999998876543
No 306
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.53 E-value=0.00054 Score=69.00 Aligned_cols=86 Identities=7% Similarity=0.049 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc--CCceEEEecc-CCcchhHHHHHhhhhhcCcceec--cCCCCChHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGV 176 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~--G~kVaIVs~D-~~R~~a~dqL~~~a~~~~i~~~~--~~~~~dp~~ia~~~l 176 (495)
+++.|.|+||+||||++..++..++++ |.+|+.|++. .+++. .+.+.+++.-. .....+...+..+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-------ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-------YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-------HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-------HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 368999999999999999999988876 7899999884 34432 23343332110 011222222213333
Q ss_pred HH---HhhcCCcEEEEeCCCC
Q 011010 177 ET---FKKENCDLIIVDTSGR 194 (495)
Q Consensus 177 ~~---~~~~~~dvviIDTaG~ 194 (495)
+. +....+++++||.-.-
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHhhccCceEEEEecccc
Confidence 33 3456789999998553
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.52 E-value=0.00066 Score=66.39 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc----------CCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----------GWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~----------G~kVaIVs~D~ 139 (495)
..+++|+|++|+||||++..++..+... +.+|+.++.+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3589999999999999999999877652 35787777643
No 308
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.51 E-value=0.00029 Score=76.65 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=63.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhh--------cCcc--eeccCCCCChHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK--------AKIP--FYGSYTESDPVR 170 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~--------~~i~--~~~~~~~~dp~~ 170 (495)
.++++|.|+||+||||+++.++..+...|.+|.+++. +.+ |.+.|...... .+.. .+. ....+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap-T~~--Aa~~L~e~~~~~a~Tih~ll~~~~~~~~-~~~~~--- 276 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP-TGK--AARRLGEVTGRTASTVHRLLGYGPQGFR-HNHLE--- 276 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES-SHH--HHHHHHHHHTSCEEEHHHHTTEETTEES-CSSSS---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC-cHH--HHHHhHhhhcccHHHHHHHHcCCcchhh-hhhcc---
Confidence 3578999999999999999999999999999987765 333 33333321100 0000 000 00001
Q ss_pred HHHHHHHHHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 171 ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
...+|++|||.++.... .++. .+...+.....+++|-|..
T Consensus 277 ----------~~~~dvlIIDEasml~~--~~~~---~Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 277 ----------PAPYDLLIVDEVSMMGD--ALML---SLLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp ----------CCSCSEEEECCGGGCCH--HHHH---HHHTTSCTTCEEEEEECTT
T ss_pred ----------cccCCEEEEcCccCCCH--HHHH---HHHHhCcCCCEEEEEeccc
Confidence 12689999999997643 3333 3444453344688888875
No 309
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.51 E-value=0.00019 Score=67.29 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+..++|+|+||+||||++..++..+...+.++..++++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 346999999999999999999999988899999888743
No 310
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.48 E-value=0.00019 Score=71.83 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH------------HcC----CceEEEeccC-Ccc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------------KKG----WKPALVCADT-FRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~------------~~G----~kVaIVs~D~-~R~ 142 (495)
..++.|+|+||+||||++..++...+ +.| .+|+.++.+. |++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 45899999999999999999997642 234 6888888864 444
No 311
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.48 E-value=0.00015 Score=72.40 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.++|.|+||+||||++..++..+...+.++..++++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 34999999999999999999999988888888888743
No 312
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.47 E-value=0.00066 Score=69.44 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
..+++|+|++|||||||++.|+.++... +..+..+. |+.... +.. ....++...... +. ....+++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~----~~~--~~~~v~q~~~~~--~~-~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV----HES--KKCLVNQREVHR--DT-LGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC----CCC--SSSEEEEEEBTT--TB-SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh----hhc--cccceeeeeecc--cc-CCHHHHHHHH
Confidence 4589999999999999999999998865 55554443 331110 000 000011111111 11 1133467777
Q ss_pred hhcCCcEEEEeCCC
Q 011010 180 KKENCDLIIVDTSG 193 (495)
Q Consensus 180 ~~~~~dvviIDTaG 193 (495)
...++|++++|-|-
T Consensus 193 L~~~PdvillDEp~ 206 (356)
T 3jvv_A 193 LREDPDIILVGEMR 206 (356)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEecCCCC
Confidence 77899999999986
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.46 E-value=0.00016 Score=67.15 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+.+|+|+|++||||||++..|+..+ | ..+++.|.++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~~ 65 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFHS 65 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccccc
Confidence 4589999999999999999999766 3 45667776543
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.44 E-value=0.00013 Score=67.14 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+++|+|++||||||++++|+..+...|++|+++..|+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 57999999999999999999999998899999998865
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.42 E-value=0.0025 Score=58.14 Aligned_cols=34 Identities=41% Similarity=0.553 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs 136 (495)
+|+|.|++||||||++..|+.+|...|..|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5899999999999999999999988898885443
No 316
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.41 E-value=0.00014 Score=76.65 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.+..+|+|+|++++|||||+|.|..++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~ 92 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMY 92 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcc
Confidence 4567999999999999999999997753
No 317
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.41 E-value=0.0012 Score=62.61 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs 136 (495)
..+|+|.|++||||||.+..|+.+|...|.+|..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458999999999999999999999999999985443
No 318
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.39 E-value=0.0025 Score=60.79 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIV 135 (495)
+..+|+|.|++||||||++..|+.+|.. |.+|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4568999999999999999999999988 8777543
No 319
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00072 Score=62.56 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+.+|+|+|++||||||++..|+..+ ...+++.|.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~ 54 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHP 54 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcc
Confidence 4579999999999999999999766 355778887654
No 320
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.34 E-value=0.00084 Score=64.34 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc----CCceEEEe
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVC 136 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~----G~kVaIVs 136 (495)
..+|+|.|++||||||.+..|+.+|... |.+|.++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 4589999999999999999999999987 99986443
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.34 E-value=0.00016 Score=65.71 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+|+|+|++||||||++..|+.+|...|..+..++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3689999999999999999999998888888888653
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.32 E-value=0.0012 Score=62.50 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCC-ceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~-kVaIVs~D~ 139 (495)
.+|+|.|++||||||.+..|+.+|...|. .| +++-.|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCC
Confidence 47999999999999999999999999998 55 444433
No 323
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.29 E-value=0.0011 Score=69.07 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
..+.+|+|+|+|||||||++..|+.. ....+|+.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS-----AGYVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG-----GTCEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh-----cCcEEEccchHH
Confidence 34678999999999999999999843 246778888764
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.28 E-value=0.00044 Score=69.74 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHH--cCCceEEEeccCCc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~--~G~kVaIVs~D~~R 141 (495)
+.+.+|+|+|++||||||++..|+..+.. .+.+|.+++.|.|-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 45789999999999999999999988874 35689999999764
No 325
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.27 E-value=0.0021 Score=60.77 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH-HHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l-~~~G~kVaIVs~D~ 139 (495)
..++.|+|+||+||||++..+|... .+.|++|.+++.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 3479999999999999999998765 45688999999864
No 326
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.27 E-value=0.0019 Score=68.78 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~ 139 (495)
..+++|.|+||+||||++..+|..++.+ |.+|++++.+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3479999999999999999999999886 99999999864
No 327
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.26 E-value=0.00052 Score=68.18 Aligned_cols=42 Identities=33% Similarity=0.337 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC--CceE-EEeccCC
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPA-LVCADTF 140 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G--~kVa-IVs~D~~ 140 (495)
+++.+|+|+|++||||||++..|+..|...| .++. +|+.|.|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3467999999999999999999999998654 4444 4498875
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00021 Score=64.88 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+|+|+|++||||||++..|+.++...|.+..+++.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4799999999999999999999998878766777753
No 329
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.24 E-value=0.00086 Score=67.81 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCcc-ccHHHHH----HHH---hccCCceEEEEeCccCC
Q 011010 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSIG-QAAFDQA----QAF---KQSVSVGAVIVTKMDGH 254 (495)
Q Consensus 183 ~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g-~~~~~~~----~~f---~~~~~~~~vIlTK~D~~ 254 (495)
...+.|.||||......... + .......++.+++|+|++.. .+..... ... ...+ +..++.||+|+.
T Consensus 45 ~v~LqIWDTAGQErf~~~~l--~--~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~i-pillvgNK~DL~ 119 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSY--D--SERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI-NIEVLIHKVDGL 119 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSH--H--HHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTC-EEEEECCCCCSS
T ss_pred EEEEEEEECCCchhccchhh--h--hhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCC-cEEEEEECcccC
Confidence 46889999999743211000 0 11223488999999998754 1222211 111 1223 347889999986
Q ss_pred CC
Q 011010 255 AK 256 (495)
Q Consensus 255 ~~ 256 (495)
..
T Consensus 120 ~~ 121 (331)
T 3r7w_B 120 SE 121 (331)
T ss_dssp CS
T ss_pred ch
Confidence 43
No 330
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.23 E-value=0.0017 Score=69.61 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+++|+|++|+||||++..++..+...|.++..++.+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4799999999999999999999888778887666553
No 331
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.22 E-value=0.00062 Score=66.53 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccC-CcchhHHHHHhhhhhcCcceecc-CCCCChHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVE 177 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~-~R~~a~dqL~~~a~~~~i~~~~~-~~~~dp~~ia~~~l~ 177 (495)
..+++|+|++||||||+++.|+.++... ..+|.+...+. |.+ +..+.+... ....++. ..+.++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-----------~~~~~~v~q~~~gl~~~-~l~~~la 92 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-----------KHKKSIVNQREVGEDTK-SFADALR 92 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-----------CCSSSEEEEEEBTTTBS-CHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-----------CCcceeeeHHHhCCCHH-HHHHHHH
Confidence 4589999999999999999999988764 55666655442 111 000000000 0000111 1134555
Q ss_pred HHhhcCCcEEEEeCCC
Q 011010 178 TFKKENCDLIIVDTSG 193 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG 193 (495)
.+...++|++++|.|-
T Consensus 93 ~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 93 AALREDPDVIFVGEMR 108 (261)
T ss_dssp HHHHHCCSEEEESCCC
T ss_pred HHHhhCCCEEEeCCCC
Confidence 5555689999999986
No 332
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.22 E-value=0.0011 Score=67.41 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH---c---CCceEEEec-cCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK---K---GWKPALVCA-DTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~---~---G~kVaIVs~-D~~R 141 (495)
..++.|+|++|+||||++..++..++. . |.+|..++. +.++
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 458999999999999999999988743 2 357666665 3443
No 333
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.21 E-value=0.00098 Score=63.71 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTF 140 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~ 140 (495)
++.+|+|.|++||||||.+..|+.+|.. .|.+|.+++..|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4678999999999999999999999998 8999988554443
No 334
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.20 E-value=0.0044 Score=62.48 Aligned_cols=61 Identities=18% Similarity=0.059 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCC
Q 011010 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTF 140 (495)
Q Consensus 73 ~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~ 140 (495)
+...+.+...+...+... .+.+..++|+|++|+||||++..++..+... +..+..+++...
T Consensus 23 ~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp HHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred HHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344555555555554321 1112279999999999999999999888776 577777776443
No 335
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.20 E-value=0.00068 Score=74.56 Aligned_cols=43 Identities=30% Similarity=0.348 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL 148 (495)
+.+|.||||+|||||+..+..++.++|.+|++++. --.|.|++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i 249 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNL 249 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHH
Confidence 56788999999999999999999999999988875 33445544
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.20 E-value=0.00037 Score=64.76 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=33.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--ceEEEeccCC
Q 011010 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTF 140 (495)
Q Consensus 93 ~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~--kVaIVs~D~~ 140 (495)
++...-.++.+|+|+|++||||||++..|+ +. .+.+++.|.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~------~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQ------KHLPNCSVISQDDF 56 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHH------TTSTTEEEEEGGGG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHH------HhcCCcEEEeCCcc
Confidence 344444556789999999999999999999 64 7899999875
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.18 E-value=0.0003 Score=65.26 Aligned_cols=42 Identities=31% Similarity=0.338 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+.+|+|+|++||||||++..|+..+...|.-+..++.|.++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 568999999999999999999999987687666777765543
No 338
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.17 E-value=0.0013 Score=65.16 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.|..++|.|+||+|||+++..+|..+ |..+..+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 35678889999999999999999877 667777765
No 339
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.16 E-value=0.0014 Score=67.27 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCceEEEeccCCcchhHHHHHhhhhhcCcceecc-CCCCChHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVE 177 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~-~~~~dp~~ia~~~l~ 177 (495)
+..+++|+|++|||||||++.|+.++... ..+|.++..+. . +..+..+.+... ....++.. ...++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~-e---------~~~~~~~~~v~Q~~~g~~~~~-~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI-E---------YVFKHKKSIVNQREVGEDTKS-FADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC-C---------SCCCCSSSEEEEEEBTTTBSC-SHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH-h---------hhhccCceEEEeeecCCCHHH-HHHHHH
Confidence 34689999999999999999999998865 45666555322 1 001111111111 00011111 134566
Q ss_pred HHhhcCCcEEEEeCCC
Q 011010 178 TFKKENCDLIIVDTSG 193 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG 193 (495)
.+...++|++++|-|.
T Consensus 204 ~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 204 AALREDPDVIFVGEMR 219 (372)
T ss_dssp HHTTSCCSEEEESCCC
T ss_pred HHhhhCcCEEEECCCC
Confidence 6656689999999986
No 340
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.16 E-value=0.0048 Score=58.85 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
++.++|+|+||+||||++..++..+ +..+..+++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~ 72 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAG 72 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEech
Confidence 4568999999999999999999755 455655665
No 341
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.14 E-value=0.00043 Score=64.39 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
++.+|+|+|++||||||++..|+..+.. ++.+++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 3568999999999999999999965542 5889998864
No 342
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.14 E-value=0.0036 Score=63.15 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.++.|.|+||+||||++..++.. .|.+|..++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 56789999999999999999876 5778888877
No 343
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.13 E-value=0.0018 Score=59.32 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIV 135 (495)
++|+|++|+||||++..++..+...++.+.++
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 99999999999999999998886655443333
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.12 E-value=0.00023 Score=70.72 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|+|.|++||||||++..|+..|...|.++.+++.|.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 45899999999999999999999888778899999998654
No 345
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.10 E-value=0.00034 Score=65.51 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~D~~R 141 (495)
+.+|+|+|++||||||++..|+.+|. ..|.++..++.|.+|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45899999999999999999999998 678888888877655
No 346
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.07 E-value=0.0013 Score=65.67 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-HcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~-~~G~kVaIVs~ 137 (495)
..+.|.|+||+|||+++..++..+. ++|.+|..+++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 4689999999999999999999999 88999998887
No 347
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.06 E-value=0.0044 Score=60.78 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW 130 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~ 130 (495)
+..++|+|+||+||||++..++..+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 346999999999999999999999887554
No 348
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.06 E-value=0.0062 Score=61.91 Aligned_cols=137 Identities=13% Similarity=0.263 Sum_probs=84.5
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 101 ~~vI~ivG~~-GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
...++++|.- .+||||++..|...+.++|.++..+.+.. . . .+ ....+++. ..-.++.+..+++.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq--t-g--~~---~~~~gi~~-----Dav~~df~aG~ve~~ 218 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ--T-G--VM---LEGDGVAL-----DAVRVDFAAGAVEQM 218 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH--H-H--HH---HHSCSCCG-----GGSBHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc--h-h--hh---hhcCCcch-----hHHHHHHHhhhHHHH
Confidence 5689999987 99999999999999999999999876511 0 0 01 11222221 111233333333332
Q ss_pred ---hhcCCcEEEEeCCCC-CcchHHHHHHHHHHHHHhcCCCEEEEEeeCCccc-------------cHHHHHHHHh----
Q 011010 180 ---KKENCDLIIVDTSGR-HKQEAALFEEMRQVSEATVNPDLVIFVMDSSIGQ-------------AAFDQAQAFK---- 238 (495)
Q Consensus 180 ---~~~~~dvviIDTaG~-~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~g~-------------~~~~~~~~f~---- 238 (495)
..+.+|+++|.-.|- .+..... ...+.... +|+.+++|.++..+. ........+.
T Consensus 219 ~~~~~~~~d~vlVEGqGgl~~P~~~~---t~~ll~g~-~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~ 294 (349)
T 2obn_A 219 VMRYGKNYDILHIEGQGSLLHPGSTA---TLPLIRGS-QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGG 294 (349)
T ss_dssp HHHHTTTCSEEEECCCCCTTSTTCCT---HHHHHHHH-CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEEeCCCcccCcChHh---HHHHHHHc-CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhc
Confidence 234799999999873 2222211 12355555 899999999986432 1233333332
Q ss_pred --ccCCceEEEEeCccCC
Q 011010 239 --QSVSVGAVIVTKMDGH 254 (495)
Q Consensus 239 --~~~~~~~vIlTK~D~~ 254 (495)
...++.++++|..+..
T Consensus 295 ~~~~~~V~Gi~lN~~~~~ 312 (349)
T 2obn_A 295 AFGTVPVVGIALNTAHLD 312 (349)
T ss_dssp TSCCCCEEEEEEECTTSC
T ss_pred cCCCCcEEEEEEECCCCC
Confidence 3367899999998764
No 349
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.05 E-value=0.00043 Score=66.73 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHH-----cCCceEEEeccCC
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-----KGWKPALVCADTF 140 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~-----~G~kVaIVs~D~~ 140 (495)
+++.+|+|+|++||||||++..|+..|.- .++++.+++.|.|
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 45678999999999999999999987653 2567889999864
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00049 Score=62.45 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|+|+|++||||||++..|+.++...|..+..++.|..|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 45799999999999999999999987778888777775543
No 351
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.0031 Score=63.72 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc--------CCceEEEec
Q 011010 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK--------GWKPALVCA 137 (495)
Q Consensus 73 ~~~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~--------G~kVaIVs~ 137 (495)
+...+.+...|...+.. +.+..++|.|++|+||||++..++..+... +..+..+++
T Consensus 26 ~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred HHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 34455565666555442 234579999999999999999999988765 667776765
No 352
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.04 E-value=0.0057 Score=69.28 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=32.2
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHc-----CCceEEEe
Q 011010 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKK-----GWKPALVC 136 (495)
Q Consensus 101 ~~vI~ivG~~-GvGKTTl~~kLa~~l~~~-----G~kVaIVs 136 (495)
.+.++|.|.. ||||||++..|+..|+++ |.+|+..-
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 3569999995 999999999999999999 99999876
No 353
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.00 E-value=0.001 Score=69.84 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc--CCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~--G~kVaIVs~D~ 139 (495)
+.++|.|+||+||||++..++.++... +.++..+++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 459999999999999999999998776 78888888743
No 354
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.99 E-value=0.0033 Score=59.06 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs 136 (495)
+.|+|=|..||||||.+..|+.+|. +|.+|.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4789999999999999999999996 488876654
No 355
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.97 E-value=0.0032 Score=76.82 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec-cCCCCChHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVET 178 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~-~~~~~dp~~ia~~~l~~ 178 (495)
++..+.|+||||+||||++.+++....++|.+|+.++++-.. +++. +...++++-. .....+|.+-+.+.+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~----~~l~--a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIY--ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC----CHHH--HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc----CHHH--HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 356899999999999999999999999999999999985321 1111 2333322110 00122333333333332
Q ss_pred -HhhcCCcEEEEeCC-CCCc
Q 011010 179 -FKKENCDLIIVDTS-GRHK 196 (495)
Q Consensus 179 -~~~~~~dvviIDTa-G~~~ 196 (495)
.+...+++|+||.- ++.+
T Consensus 1500 lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHhcCCCCEEEEcChhHhcc
Confidence 34468999999996 4543
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.00047 Score=63.12 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+++|+|++||||||++..|+.++...|.++..|..|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 47999999999999999999999998888888887764
No 357
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.97 E-value=0.00021 Score=66.36 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+|+|+|++||||||++..|+.+|...|.+|.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 689999999999999999999998888888877643
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.96 E-value=0.00075 Score=67.34 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCceEEEeccCCc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFR 141 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~--~~G~kVaIVs~D~~R 141 (495)
++.+|+|+|++||||||++..|+..+. -.+.+|.+++.|-+-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 456899999999999999999998876 345679999988643
No 359
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.96 E-value=0.0014 Score=64.44 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+.+|+|+|+|||||||++..|+..+ ....+++.|.+|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHH
Confidence 3579999999999999999998532 2467888887664
No 360
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.0069 Score=60.81 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc------CCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~------G~kVaIVs~D 138 (495)
+..++|+|++|+||||++..++..+... +..+..+++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4569999999999999999999988654 5555556653
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.94 E-value=0.00091 Score=61.97 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEE
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIV 135 (495)
+.+|+|+|++||||||++..|+.+|...+..+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 46899999999999999999999998888887544
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.0004 Score=63.32 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|+|+|+|||||||++..|+.++ |. .+++.|.+|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 5689999999999999999999766 33 356777654
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.89 E-value=0.001 Score=66.80 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CceEEEeccCC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTF 140 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-G-~kVaIVs~D~~ 140 (495)
++.+|+|+|++||||||++..|+..+... | .++.+|..|.|
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 45689999999999999999999888753 4 57999998864
No 364
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0029 Score=63.44 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc---CCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK---GWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~---G~kVaIVs~ 137 (495)
+..++|+|++|+||||++..++..+... +..+..+++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 4569999999999999999999988765 666777765
No 365
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.028 Score=56.42 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 011010 76 QQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (495)
Q Consensus 76 ~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~ 127 (495)
+..++..|...+.. +++..+.|.|+||+|||+++..++..+..
T Consensus 29 ~~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 29 FTRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45566666666542 23557999999999999999999999975
No 366
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.85 E-value=0.0044 Score=74.67 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec--cCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~--~~~~~dp~~ia~~~l~~ 178 (495)
..++.|.|+||+||||++..+|..+++.|.+|+.++.+--. +|+. +.+.+++... ..... +..-+.+.++.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~----~ql~--A~~lGvd~~~L~i~~~~-~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIY--ARKLGVDIDNLLCSQPD-TGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CHHH--HHHTTCCGGGCEEECCS-SHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH----HHHH--HHHcCCChhheEEecCC-cHHHHHHHHHH
Confidence 45899999999999999999999999989999999985321 2222 4444433211 01112 23333333332
Q ss_pred H-hhcCCcEEEEeCCCCC
Q 011010 179 F-KKENCDLIIVDTSGRH 195 (495)
Q Consensus 179 ~-~~~~~dvviIDTaG~~ 195 (495)
+ ...++++|+||.-...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 2 2357999999986654
No 367
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.85 E-value=0.0027 Score=60.25 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=58.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
..+.+++|+.|+||||.+..++..+..+|++|.++.. |. |.+. ....++.++....... .++. +.++.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~-R~ge----~~i~s~~g~~~~a~~~-~~~~----~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN-RYSE----EDVVSHNGLKVKAVPV-SASK----DIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC----------------------CCEEEC-SSGG----GGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC-cchH----HHHHhhcCCeeEEeec-CCHH----HHHHH
Confidence 4678899999999999999999999999999999974 32 2211 1122333332221111 1111 11221
Q ss_pred HhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeC
Q 011010 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDS 224 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa 224 (495)
+ ...+|+|+||-+-+...+ ..+.+..+... .-..++.=+|.
T Consensus 98 ~-~~~~dvViIDEaQF~~~~--~V~~l~~l~~~--~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 98 I-TEEMDVIAIDEVQFFDGD--IVEVVQVLANR--GYRVIVAGLDQ 138 (214)
T ss_dssp C-CSSCCEEEECCGGGSCTT--HHHHHHHHHHT--TCEEEEEECSB
T ss_pred H-hcCCCEEEEECcccCCHH--HHHHHHHHhhC--CCEEEEEeccc
Confidence 2 135999999998876433 33444443321 23344444543
No 368
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.001 Score=61.41 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
..++|.|++|+||||++..++..+..++.++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 469999999999999999999999888889988877
No 369
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.0097 Score=56.43 Aligned_cols=125 Identities=19% Similarity=0.276 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HHcCC--ceEEEeccCCcchhHHHHHhhhhhcCcce-----ec-----cC--CCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYH-QKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPF-----YG-----SY--TES 166 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l-~~~G~--kVaIVs~D~~R~~a~dqL~~~a~~~~i~~-----~~-----~~--~~~ 166 (495)
..++++|++|+||||++..++... ...+. .+.++...+.|.-+.......+...+..+ +. .. ...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 369999999999999887666443 33333 55666666777666544444333222110 00 00 000
Q ss_pred -----ChHHHHHHHHHHHhhcCCcEEEEeCCCCCcchHHHH-HHHHHHHHHhcCCCEEEEEeeCCccccH
Q 011010 167 -----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALF-EEMRQVSEATVNPDLVIFVMDSSIGQAA 230 (495)
Q Consensus 167 -----dp~~ia~~~l~~~~~~~~dvviIDTaG~~~~~~~l~-~el~~i~~~i~~~d~vllVvDa~~g~~~ 230 (495)
.| ....+.+.. .-.++++++||.+-....+.+.. ..++.+.... ++.-++++.|+...+.
T Consensus 157 ~Ivv~Tp-g~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~--~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 157 SIMFCTV-GVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY--PEVRIVLMSATIDTSM 222 (235)
T ss_dssp EEEEEEH-HHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCCHH
T ss_pred eEEEECH-HHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC--CCCeEEEEecCCCHHH
Confidence 01 122222322 23578999999997643343333 3455555443 5667788888865443
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.82 E-value=0.0047 Score=74.40 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceec--cCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~--~~~~~dp~~ia~~~l~~ 178 (495)
..++.|.|+||+||||++..++...++.|.+|+.++.+--.. ++ .+.+.+++... ..... +.+-+.+.+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~----~~--~a~~lGvd~~~L~i~~~~-~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PI--YARKLGVDIDNLLCSQPD-TGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HH--HHHHTTCCGGGCEEECCS-SHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH----HH--HHHHcCCCHHHeEEcCCC-CHHHHHHHHHH
Confidence 458999999999999999999999999999999999964221 11 13333332110 01112 22333333332
Q ss_pred -HhhcCCcEEEEeCCCCC
Q 011010 179 -FKKENCDLIIVDTSGRH 195 (495)
Q Consensus 179 -~~~~~~dvviIDTaG~~ 195 (495)
....++++|+||.-...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 23457999999986543
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.81 E-value=0.0013 Score=60.95 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs 136 (495)
+.+|+|+|++||||||++..|+.+|...+..+.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999988788774433
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.0012 Score=60.76 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceE
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVa 133 (495)
+.+|+|.|++||||||++..|+.+|...| ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 45799999999999999999999887666 553
No 373
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.77 E-value=0.00099 Score=59.57 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~ 127 (495)
..++|+|++|+||||++..++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999988866
No 374
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0059 Score=61.17 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
++-++|.|+||+|||+++..+|..+ .+..+..+++... ...+. ..........+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l-------------------~~~~~-g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDL-------------------VSKWL-GESEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSS-------------------CCSSC-CSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHH-------------------Hhhhh-hHHHHHHHHHHHHHH
Confidence 4579999999999999999999765 2344444444111 00011 112233444444555
Q ss_pred hcCCcEEEEeCCC
Q 011010 181 KENCDLIIVDTSG 193 (495)
Q Consensus 181 ~~~~dvviIDTaG 193 (495)
.....++|||-..
T Consensus 103 ~~~~~vl~iDEid 115 (322)
T 1xwi_A 103 ENKPSIIFIDEID 115 (322)
T ss_dssp HTSSEEEEEETTT
T ss_pred hcCCcEEEeecHH
Confidence 5567899999654
No 375
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.76 E-value=0.0081 Score=55.94 Aligned_cols=35 Identities=40% Similarity=0.537 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.|+|=|.-||||||.+..|+.+|.++|.+|.++.-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 47788999999999999999999999999876653
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.76 E-value=0.0015 Score=59.36 Aligned_cols=32 Identities=44% Similarity=0.686 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEE
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaI 134 (495)
+|+|+|++||||||++..|+.+|...|..+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 58999999999999999999999877876543
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.75 E-value=0.00079 Score=59.94 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
+|+|+|++||||||++..|+..+ | ..+++.|.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeeecCccccc
Confidence 68999999999999999999654 2 45678887543
No 378
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.74 E-value=0.013 Score=54.74 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..|.+.+.+|.||||.+..+|.....+|++|.++....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 35777788899999999999999999999999997654
No 379
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.74 E-value=0.006 Score=74.45 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCccee--ccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~--~~~~~~dp~~ia~~~l~~ 178 (495)
..++.|.|+||+||||++..++...++.|.+|+.++..--.. ++. +.+.+++.. ...... ..+-+.+.++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~----~~~--a~~lGvd~~~L~I~~~~-~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQPD-TGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC----HHH--HHHTTCCTTTCEEECCS-SHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH----HHH--HHHcCCCHHHeEEeCCC-CHHHHHHHHHH
Confidence 458999999999999999999999998899999999864211 111 333333210 001122 22223333332
Q ss_pred H-hhcCCcEEEEeCCC
Q 011010 179 F-KKENCDLIIVDTSG 193 (495)
Q Consensus 179 ~-~~~~~dvviIDTaG 193 (495)
+ ...++++|+||.-.
T Consensus 456 lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHHhcCCcEEEECCHH
Confidence 2 34579999999854
No 380
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.74 E-value=0.00067 Score=61.12 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
.+|.|+|++||||||++..|+..+ +.....++.|.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLI 40 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHh
Confidence 479999999999999999999654 3344455676543
No 381
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.74 E-value=0.011 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYA 122 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa 122 (495)
..+++++|++||||||+++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999855
No 382
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.017 Score=59.94 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=43.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
|+-|++.||||+|||+++.++|..+ |.....|++.. +...+ ..+.....++....++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~-------------------l~sk~-vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAE-------------------LVQKY-IGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGG-------------------GSCSS-TTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHH-------------------hhccc-cchHHHHHHHHHHHHH
Confidence 4459999999999999999999543 44555454410 01111 1223344566666666
Q ss_pred hcCCcEEEEeC
Q 011010 181 KENCDLIIVDT 191 (495)
Q Consensus 181 ~~~~dvviIDT 191 (495)
....-++|||-
T Consensus 239 ~~aP~IIFiDE 249 (405)
T 4b4t_J 239 EHAPSIIFMDE 249 (405)
T ss_dssp HTCSEEEEEES
T ss_pred HhCCceEeeec
Confidence 66778899884
No 383
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.73 E-value=0.01 Score=62.34 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCC-ceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~-kVaIVs~ 137 (495)
.++|.|++|+||||++..++.+|...|. +|.+++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 6899999999999999999999998887 5666654
No 384
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.0035 Score=60.87 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+..++|.|+||+||||++..++..+ +..+..+++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3459999999999999999998654 445554544
No 385
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.72 E-value=0.004 Score=68.07 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH----cCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----KGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~----~G~kVaIVs~ 137 (495)
+.+++.|+||+||||+++.+...+.+ .+.+|.++++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 47899999999999999999998874 3556666554
No 386
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.69 E-value=0.0014 Score=66.64 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.+|+|+|++||||||++..||..+ .+.+++.|.|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 479999999999999999999654 3789999975
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.66 E-value=0.0028 Score=63.72 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+||+||||||++..||.. ....+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR-----LNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT-----TTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh-----CccceeecCc
Confidence 457999999999999999999953 4568999995
No 388
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.64 E-value=0.0018 Score=62.10 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCceEEEeccC
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADT 139 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~-----G~kVaIVs~D~ 139 (495)
++.+|+|+|++||||||++..|+..+..- ..++.+++.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 45689999999999999999999876321 34577777764
No 389
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.63 E-value=0.0019 Score=59.41 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+.+|+|+|++||||||++..|+.+| .|.++..++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 4579999999999999999999776 3566655543
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.61 E-value=0.0015 Score=62.08 Aligned_cols=39 Identities=36% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec-cCCcc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~~R~ 142 (495)
.++++|+|+|+|||||||.+..|+..| .+.-+++ |.+|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHHH
Confidence 356799999999999999999999655 2333443 55553
No 391
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.60 E-value=0.0039 Score=63.18 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+.+|+|+||+||||||++..||. ....-+|++|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 45899999999999999999993 345789999963
No 392
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.59 E-value=0.0056 Score=59.82 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+..++|.|+||+||||++..++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999654
No 393
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.0038 Score=55.61 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-------cCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-------KGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~-------~G~kVaIVs~ 137 (495)
+..++|+|++|+||||++..++..+.. .+..+..+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345899999999999999999998876 3555555554
No 394
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.011 Score=59.23 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
++|+|++|+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999998654
No 395
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.017 Score=57.22 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
++.+++.|+||+||||++..++..+ +.++.-+++..++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~ 85 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK 85 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC
Confidence 4568888999999999999998665 4555555553333
No 396
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0032 Score=66.02 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
|+-|++.||||+|||+++.++|..+ |.....|++... .. ..........+.....+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l-------------------~~-~~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL-------------------VQ-MYIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CS-SCSSHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh-------------------hh-cccchHHHHHHHHHHHHH
Confidence 5569999999999999999999543 455555554110 01 111122334455555555
Q ss_pred hcCCcEEEEeC
Q 011010 181 KENCDLIIVDT 191 (495)
Q Consensus 181 ~~~~dvviIDT 191 (495)
....-++|||-
T Consensus 272 ~~aP~IifiDE 282 (434)
T 4b4t_M 272 EKAPTIIFIDE 282 (434)
T ss_dssp HHCSEEEEEEC
T ss_pred hcCCeEEeecc
Confidence 55677888885
No 397
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.53 E-value=0.0012 Score=60.32 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
++.+|+|+|++||||||++..|+..+ ....++++|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHH
Confidence 34579999999999999999999541 145667775
No 398
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.52 E-value=0.0011 Score=60.67 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.+++|+||+||||||++..|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999997765
No 399
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=60.14 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.+++|+|++||||||+++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999654
No 400
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0054 Score=61.51 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWK 131 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G~k 131 (495)
++|+|++|+||||++..++..+...+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 8999999999999999999887654433
No 401
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0014 Score=60.59 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+|+|+|++||||||++..|+ +....++++|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La------~lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT------DLGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH------TTTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH------HCCCcccchHH
Confidence 479999999999999999998 44455677764
No 402
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0036 Score=65.52 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=42.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
|+-|++.||||+|||+++.++|..+ |.....|++... ...+ ........++....++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l-------------------~~~~-~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF-------------------VHKY-LGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT-------------------CCSS-CSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh-------------------hccc-cchhHHHHHHHHHHHH
Confidence 4569999999999999999999654 455555554110 0111 1122334455555665
Q ss_pred hcCCcEEEEeC
Q 011010 181 KENCDLIIVDT 191 (495)
Q Consensus 181 ~~~~dvviIDT 191 (495)
....-+++||-
T Consensus 263 ~~aP~IifiDE 273 (428)
T 4b4t_K 263 ENAPSIIFIDE 273 (428)
T ss_dssp HTCSEEEEEEC
T ss_pred HcCCCeeechh
Confidence 55667888884
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.009 Score=57.18 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+.-++|+|+||+||||++..++..+ +..+..+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 3458999999999999999999765 334444443
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.0017 Score=58.87 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|+|||||||++..|+..+ | ..+++.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHH
Confidence 5689999999999999999999654 3 3456665
No 405
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.48 E-value=0.014 Score=61.44 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
.+.+|+++|.|||||||++.+|+.++...+...-.++.|.+|.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 4568999999999999999999999887777777777665443
No 406
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.47 E-value=0.0099 Score=60.32 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
.++.++|+|+||+||||++..+|..+ +..+..+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 35679999999999999999998654 555555555
No 407
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0039 Score=65.41 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
|+-|++.||||+|||+++.++|..+ |.....|++
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 4569999999999999999999654 455555554
No 408
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.44 E-value=0.0018 Score=59.01 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAY 123 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~ 123 (495)
+.+++|+|++||||||++..|+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999993
No 409
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.43 E-value=0.017 Score=60.61 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=63.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
..++.++.|+||+||||++.+++. ..++.++++ +..+.+.++.-....+.+. .....+......+...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTp---T~~aa~~l~~kl~~~~~~~----~~~~~V~T~dsfL~~~ 227 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVP---GRQAAEMIRRRANASGIIV----ATKDNVRTVDSFLMNY 227 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEES---CHHHHHHHHHHHTTTSCCC----CCTTTEEEHHHHHHTT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeC---CHHHHHHHHHHhhhcCccc----cccceEEEeHHhhcCC
Confidence 456889999999999999999873 256777776 4444555544332211100 0000111112222221
Q ss_pred hhc---CCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCCc
Q 011010 180 KKE---NCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSSI 226 (495)
Q Consensus 180 ~~~---~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~~ 226 (495)
... .+|++|||-++..+.. ++ ..+...+ .+..++++=|...
T Consensus 228 ~~~~~~~~d~liiDE~sm~~~~--~l---~~l~~~~-~~~~vilvGD~~Q 271 (446)
T 3vkw_A 228 GKGARCQFKRLFIDEGLMLHTG--CV---NFLVEMS-LCDIAYVYGDTQQ 271 (446)
T ss_dssp TSSCCCCCSEEEEETGGGSCHH--HH---HHHHHHT-TCSEEEEEECTTS
T ss_pred CCCCCCcCCEEEEeCcccCCHH--HH---HHHHHhC-CCCEEEEecCccc
Confidence 111 2899999999876432 22 2233445 6789999999863
No 410
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.42 E-value=0.0087 Score=56.87 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~ 177 (495)
...+.+++|+-|+||||.+...+..+..+|.+|.++.. |+ |.+ .....++.++....... .++.++. .
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~-R~~----~~~I~Sr~G~~~~a~~v-~~~~di~----~ 96 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD-RYH----KEKVVSHNGNAIEAINI-SKASEIM----T 96 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------CBTTBCCEEEEE-SSGGGGG----G
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC-cch----hhhHHHhcCCceeeEEe-CCHHHHH----H
Confidence 34688999999999999888888888888999999965 32 211 12234444543322111 1111110 0
Q ss_pred HHhhcCCcEEEEeCCCCCcchHHHHHHHHHHHHHhcCCCEEEEEeeCC
Q 011010 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATVNPDLVIFVMDSS 225 (495)
Q Consensus 178 ~~~~~~~dvviIDTaG~~~~~~~l~~el~~i~~~i~~~d~vllVvDa~ 225 (495)
. ....+|+|+||-+=+... ++.+.+..+.. . .-+.+++=+|..
T Consensus 97 ~-i~~~~dvV~IDEaQFf~~--~~v~~l~~la~-~-gi~Vi~~GLd~D 139 (219)
T 3e2i_A 97 H-DLTNVDVIGIDEVQFFDD--EIVSIVEKLSA-D-GHRVIVAGLDMD 139 (219)
T ss_dssp S-CCTTCSEEEECCGGGSCT--HHHHHHHHHHH-T-TCEEEEEEESBC
T ss_pred H-HhcCCCEEEEechhcCCH--HHHHHHHHHHH-C-CCEEEEeecccc
Confidence 1 124789999999988643 45555655552 3 455666666654
No 411
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.42 E-value=0.0084 Score=59.79 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
++.++|.|+||+|||+++..+|..+ +..+..|++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 4569999999999999999998664 445555554
No 412
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0016 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.+++|+||+||||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4699999999999999999997664
No 413
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0016 Score=59.79 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+++.+|+|+|++||||||++..|+.. ...+++.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 34678999999999999999999853 3567788753
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.40 E-value=0.0021 Score=58.58 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|++||||||++..|+.++ | ..+++.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 4589999999999999999999765 3 3456665
No 415
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.37 E-value=0.0021 Score=61.49 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+|+|+|++||||||++..|+.+|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999766
No 416
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.36 E-value=0.0035 Score=63.26 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
.+++|+|++||||||+++.|+.++......|.+=+.+.+... . .+..+.++.. .. .-.+.++..+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~------~--~~~~i~~~~g-gg----~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK------H--HKNYTQLFFG-GN----ITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS------S--CSSEEEEECB-TT----BCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc------c--chhEEEEEeC-CC----hhHHHHHHHHhh
Confidence 369999999999999999999776554444444333222110 0 1112222210 11 123344555556
Q ss_pred cCCcEEEEeCCCC
Q 011010 182 ENCDLIIVDTSGR 194 (495)
Q Consensus 182 ~~~dvviIDTaG~ 194 (495)
.+.|++++|-|--
T Consensus 239 ~~p~ilildE~~~ 251 (330)
T 2pt7_A 239 MRPDRIILGELRS 251 (330)
T ss_dssp SCCSEEEECCCCS
T ss_pred hCCCEEEEcCCCh
Confidence 6889999997654
No 417
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.36 E-value=0.0024 Score=58.80 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
..++.+|+|+|++||||||++..|+..+ | ..+++.|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 3456789999999999999999999643 3 4667765
No 418
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.36 E-value=0.0019 Score=59.40 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.+++|+|++||||||++..|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999999653
No 419
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.35 E-value=0.0016 Score=60.91 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+|+|+||+||||||++..|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999543
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.35 E-value=0.02 Score=52.72 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK 128 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~ 128 (495)
++.++|+|++|+||||++..++..+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3478999999999999999999777643
No 421
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.019 Score=55.07 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=50.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec--cCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~--D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~ 178 (495)
..+.+++|+.|+||||.+..++..+..+|++|.++.. |+ |.+ .. ..++.++........ +..+ .++.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg--~~---i~sr~G~~~~a~~i~-~~~d----i~~~ 87 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS--SS---FCTHDRNTMEALPAC-LLRD----VAQE 87 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEES-SGGG----GHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch--HH---HHhhcCCeeEEEecC-CHHH----HHHH
Confidence 4678889999999999999999999999999999984 43 333 11 122223322211111 1111 2222
Q ss_pred HhhcCCcEEEEeCCCCCc
Q 011010 179 FKKENCDLIIVDTSGRHK 196 (495)
Q Consensus 179 ~~~~~~dvviIDTaG~~~ 196 (495)
+ ..+|+|+||-+-+..
T Consensus 88 ~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 88 A--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp H--TTCSEEEESSGGGCT
T ss_pred h--ccCCEEEEEchhhhh
Confidence 2 479999999988764
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.33 E-value=0.0018 Score=59.78 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+|+|+|++||||||++..|+. ..+.+++.|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~------~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE------LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH------TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH------CCCEEEEccH
Confidence 699999999999999999994 3467777765
No 423
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.33 E-value=0.0024 Score=59.02 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..+|+|+|++||||||++..|+..+ | ..+++.|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l---~--~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL---N--VPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcchH
Confidence 4589999999999999999999766 3 33566654
No 424
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.32 E-value=0.0017 Score=58.07 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=26.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
.+|+|+|++||||||++..|+..+ ...+++.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d~ 37 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ 37 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEeccH
Confidence 369999999999999999999543 345666654
No 425
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.32 E-value=0.0016 Score=60.42 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+|+|+|++||||||+++.|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4479999999999999999999765
No 426
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.32 E-value=0.013 Score=59.37 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+-|+|+|+||+||||++..+|..+ +..+..+++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 458999999999999999999776 445555554
No 427
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.30 E-value=0.0023 Score=57.94 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 3579999999999999999999665 3 3456664
No 428
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.29 E-value=0.0028 Score=62.21 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
...++|+|+||+||||++..++..+...+..+..+++..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 35799999999999999999999887767777778775543
No 429
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.29 E-value=0.0024 Score=58.62 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.++|+|++||||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998774
No 430
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.29 E-value=0.0028 Score=58.42 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+.+|+|+|+|||||||++..|+.++ |.. +++.|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 45689999999999999999999766 333 56654
No 431
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.28 E-value=0.0031 Score=61.04 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.+|+|+|++||||||++..||..+ + ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 368999999999999999999654 2 457788864
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.27 E-value=0.0048 Score=62.20 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+.+|+|+|++||||||++..||.. ....+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~-----l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA-----LPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-----cCCcEEeccch
Confidence 357999999999999999999954 34778999863
No 433
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.27 E-value=0.0026 Score=57.58 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+..|+++|++||||||++..|+..+ | ..+++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~--~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---K--RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEChHH
Confidence 3479999999999999999999665 3 446677654
No 434
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.26 E-value=0.0026 Score=58.12 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+|++||||||++..|+.++. ..+++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHH
Confidence 35799999999999999999997652 55677654
No 435
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.25 E-value=0.0032 Score=68.95 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~ 142 (495)
++.+|.|+|.+||||||++..|+.+|..+|..+..++.|..|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 4568999999999999999999999988899888888776554
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.24 E-value=0.0037 Score=56.54 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|++||||||++..|+..+ | ..+++.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 5689999999999999999999655 3 4566764
No 437
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.007 Score=63.20 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~ 180 (495)
|+-|++.||||+|||+++.++|..+ |.....|+... +.. ....+.....+.....+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~-------------------l~s-k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSE-------------------LIQ-KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGG-------------------GCC-SSSSHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHH-------------------hhh-ccCchHHHHHHHHHHHHH
Confidence 4569999999999999999999543 44455454411 011 111122344455555565
Q ss_pred hcCCcEEEEe
Q 011010 181 KENCDLIIVD 190 (495)
Q Consensus 181 ~~~~dvviID 190 (495)
....-++|||
T Consensus 273 ~~aP~IIfiD 282 (437)
T 4b4t_I 273 ENAPSIVFID 282 (437)
T ss_dssp HTCSEEEEEE
T ss_pred hcCCcEEEEe
Confidence 5566788887
No 438
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.22 E-value=0.0031 Score=55.68 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKY 121 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kL 121 (495)
+|+|+|+|||||||++..|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999999998
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.0027 Score=59.29 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+|++||||||++..|+. ....++++|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~------lg~~~id~D~ 36 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD------LGINVIDADI 36 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH------TTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH------cCCEEEEccH
Confidence 46899999999999999999984 3456777764
No 440
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.21 E-value=0.0021 Score=59.10 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+|+|+|++||||||++..|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3489999999999999999999665
No 441
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.20 E-value=0.003 Score=59.18 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+..|+|+|+|||||||++..|+.+| | ..+++.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 4579999999999999999999765 3 3456663
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.20 E-value=0.0084 Score=62.17 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+||+||||||++..||..+. ..+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 35799999999999999999997653 35899985
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.19 E-value=0.0083 Score=60.11 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
+.+|+|+||+||||||++..||.. ...-+|++|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI-----LPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-----CCCcEEeccc
Confidence 568999999999999999999954 3567899985
No 444
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.19 E-value=0.022 Score=60.39 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHHhh
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~~~ 181 (495)
+-++|+|+||+||||++..++..+ +....-+++..+. . .+. .......+..+..+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~-----------~-----~~~----g~~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV-----------E-----LFV----GVGAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT-----------T-----CCT----THHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH-----------H-----HHh----cccHHHHHHHHHHHHh
Confidence 348999999999999999999644 4444444441110 0 000 0012223444555555
Q ss_pred cCCcEEEEeCCC
Q 011010 182 ENCDLIIVDTSG 193 (495)
Q Consensus 182 ~~~dvviIDTaG 193 (495)
..+.++|||-+.
T Consensus 107 ~~p~ILfIDEid 118 (476)
T 2ce7_A 107 HAPCIVFIDEID 118 (476)
T ss_dssp TCSEEEEEETGG
T ss_pred cCCCEEEEechh
Confidence 578899999763
No 445
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0028 Score=59.50 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+..|+|+|++||||||++..|+.+|
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999765
No 446
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.16 E-value=0.0035 Score=63.99 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEE
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaI 134 (495)
.+++|+|++||||||+++.|+.++......|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 369999999999999999999766543334444
No 447
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.14 E-value=0.0032 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
+|+|+|++||||||++..|+.+|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999997663
No 448
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.12 E-value=0.003 Score=59.20 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
++.+|+|+||+||||||+++.|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34589999999999999999999553
No 449
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.09 E-value=0.0085 Score=57.95 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs 136 (495)
+..++|+|+||+||||++..++..+ +.....++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 4679999999999999999999763 44544443
No 450
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.013 Score=57.37 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G 129 (495)
.++|.|++|+||||++..++..+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 389999999999999999998875433
No 451
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.09 E-value=0.0035 Score=58.65 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
.+|+|+|++||||||++..|+..| .+..++.|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCc
Confidence 479999999999999999999543 24556664
No 452
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.07 E-value=0.0071 Score=63.60 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
+-.+|+|+|++++||||++|.|..++.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~ 92 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMY 92 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhh
Confidence 457899999999999999999987774
No 453
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.07 E-value=0.0035 Score=56.65 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|++||||||++..|+..+ ....++.|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS-----GLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHH
Confidence 3468999999999999999999665 24455554
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.05 E-value=0.0029 Score=62.26 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
.+++.+|+|+|++||||||++..|+. .| ..++++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg--~~~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN----LG--AYIIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH----HT--CEEEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----CC--CcEEehhHH
Confidence 34578999999999999999999983 24 456788753
No 455
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.012 Score=57.62 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcC
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQKKG 129 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~~~G 129 (495)
++|.|++|+||||++..++..+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~ 70 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRS 70 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 89999999999999999998875433
No 456
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.04 E-value=0.0041 Score=67.49 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC-CceEEEeccCCcc
Q 011010 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTFRA 142 (495)
Q Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G-~kVaIVs~D~~R~ 142 (495)
.++.+|.|+|++||||||++..|+..|..+| ..+.+++.|..|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3456899999999999999999999998878 8888888876554
No 457
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.03 E-value=0.0028 Score=59.79 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
..+++|+|++||||||+++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999999765
No 458
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.03 E-value=0.0033 Score=58.51 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.+++|+|++||||||+++.|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999655
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.03 E-value=0.014 Score=65.30 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
..++|+|+||+|||+++..++..+...+..+..+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 469999999999999999999998777777777777
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.00 E-value=0.0039 Score=58.63 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEe-ccCCcch
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC-ADTFRAG 143 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs-~D~~R~~ 143 (495)
+|+|+|+|||||||.+..|+..| .+.-++ .|.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHHHH
Confidence 58899999999999999999654 333344 4677753
No 461
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.00 E-value=0.0057 Score=63.79 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
..+++|+|++|||||||++.|+.++.....+|.++..+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 45899999999999999999998887655567666543
No 462
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.98 E-value=0.076 Score=51.30 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH-cC-----CceEEEeccC
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KG-----WKPALVCADT 139 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~-~G-----~kVaIVs~D~ 139 (495)
.+++|+|++||||||++..|+..+.- .| .+++.|.-++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~ 75 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFF 75 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCC
Confidence 47999999999999999999965532 12 3466666554
No 463
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.97 E-value=0.0024 Score=57.62 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+.+|+|+|++||||||++..|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998654
No 464
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.97 E-value=0.0034 Score=59.19 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 4579999999999999999999654 3 4556663
No 465
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.96 E-value=0.0026 Score=63.64 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhh-------hhhcCcceeccCCCCChHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN-------ATKAKIPFYGSYTESDPVRIAVEG 175 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~-------a~~~~i~~~~~~~~~dp~~ia~~~ 175 (495)
+++|+|++|||||||+|.|+ |....-... ... +++....+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~------g~~~~~~G~-----------I~~~~~~G~~tt~~~~~~~~-------------- 223 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAIS------PELGLRTNE-----------ISEHLGRGKHTTRHVELIHT-------------- 223 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHC------C------------------------------CCCCCEEEE--------------
T ss_pred EEEEECCCCCCHHHHHHHhc------ccccccccc-----------eeeecCCCcccccHHHHhhc--------------
Q ss_pred HHHHhhcCCcEEEEeCCCCCc
Q 011010 176 VETFKKENCDLIIVDTSGRHK 196 (495)
Q Consensus 176 l~~~~~~~~dvviIDTaG~~~ 196 (495)
. .-.++||||...
T Consensus 224 -------~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 224 -------S-GGLVADTPGFSS 236 (307)
T ss_dssp -------T-TEEEESSCSCSS
T ss_pred -------C-CEEEecCCCccc
No 466
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.95 E-value=0.039 Score=55.92 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=29.4
Q ss_pred CeEEEE--EcCCCCcHHHHHHHHHHHHHHc------CCceEEEec
Q 011010 101 PSVIMF--VGLQGSGKTTTCTKYAYYHQKK------GWKPALVCA 137 (495)
Q Consensus 101 ~~vI~i--vG~~GvGKTTl~~kLa~~l~~~------G~kVaIVs~ 137 (495)
+..++| +|++|+||||++..++..+... +..+..+++
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 456777 9999999999999999887653 556666665
No 467
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.94 E-value=0.0039 Score=56.46 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+|+|+|+|||||||++..|+..| | ..+++.|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---G--VGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---C--CCEEeCchH
Confidence 59999999999999999999654 3 346787754
No 468
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.92 E-value=0.0052 Score=58.92 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
++.+|+|+|+|||||||++..|+..+ ....+++|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 35689999999999999999999655 34556653
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.92 E-value=0.023 Score=63.87 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.|+-|+|.||||+|||+++.++|..+ |..+..|++ .... . ....+.....++....+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~-----------~~l~--------s-k~~gese~~lr~lF~~A 293 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAFFFLING-----------PEIM--------S-KLAGESESNLRKAFEEA 293 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH-----------HHHH--------S-SCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh-----------HHhh--------c-ccchHHHHHHHHHHHHH
Confidence 46679999999999999999999432 444554544 1100 0 11112234455666666
Q ss_pred hhcCCcEEEEeC
Q 011010 180 KKENCDLIIVDT 191 (495)
Q Consensus 180 ~~~~~dvviIDT 191 (495)
.....-++|||-
T Consensus 294 ~~~~PsIIfIDE 305 (806)
T 3cf2_A 294 EKNAPAIIFIDE 305 (806)
T ss_dssp TTSCSEEEEEES
T ss_pred HHcCCeEEEEeh
Confidence 666677889884
No 470
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.91 E-value=0.0041 Score=56.61 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAY 123 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~ 123 (495)
.+++|+|++||||||++..|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3789999999999999999984
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.90 E-value=0.071 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.352 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
..+++|+|++||||||+++.|+..+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34899999999999999999995543
No 472
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.89 E-value=0.0049 Score=66.51 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R 141 (495)
+.+|.|+|.+||||||++..|+..|..+|+++.+++.|..|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 56899999999999999999999999889999999988654
No 473
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.87 E-value=0.0049 Score=57.33 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
+|+|+|+|||||||++..|+..+ | ..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---E--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CcEeeH
Confidence 48899999999999999998654 3 345555
No 474
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.86 E-value=0.045 Score=51.04 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
..+..++|+.|+||||.+.+.+..+..+|.+|.++++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45788899999999988888888888889999999853
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.85 E-value=0.0034 Score=62.17 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
+..++|+|+||+||||++..++..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4569999999999999999999654
No 476
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.83 E-value=0.0046 Score=55.13 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+|+|+|++||||||++..|+..| | ..+++.|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~d~~ 36 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL---G--YEFVDTDIF 36 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CcEEcccHH
Confidence 69999999999999999999755 3 356777654
No 477
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.83 E-value=0.0044 Score=58.08 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
...|+|+|+|||||||++..|+.+| | ..+++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--ceEEehh
Confidence 3479999999999999999999776 3 4456664
No 478
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.83 E-value=0.0046 Score=55.63 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+|+|+|+|||||||++..|+..+ ....++.|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcccHH
Confidence 58999999999999999999654 2456677643
No 479
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.017 Score=60.87 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCCcchhHHHHHhhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~R~~a~dqL~~~a~~~~i~~~~~~~~~dp~~ia~~~l~~~ 179 (495)
.|+-|+|.||||+|||+++.++|..+ |.....|++.. + .. ..........+.....+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~-----------L--------~s-k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSE-----------L--------VQ-KYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGG-----------G--------CC-CSSSHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHH-----------h--------hc-ccCCHHHHHHHHHHHHH
Confidence 35679999999999999999999643 44555555411 0 11 11112234455556666
Q ss_pred hhcCCcEEEEeC
Q 011010 180 KKENCDLIIVDT 191 (495)
Q Consensus 180 ~~~~~dvviIDT 191 (495)
.....-++|||-
T Consensus 299 r~~aP~IIfiDE 310 (467)
T 4b4t_H 299 RTKKACIIFFDE 310 (467)
T ss_dssp HHTCSEEEEEEC
T ss_pred HhcCCceEeecc
Confidence 666677888884
No 480
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.82 E-value=0.013 Score=64.23 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQN 151 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~ 151 (495)
+.+|.|+||+||||++..++.++.+ .+.+|++++. ...|.+++...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~ 243 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEK 243 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES---SHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC---cHHHHHHHHHH
Confidence 5788999999999999999998887 5777777665 44556666544
No 481
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.81 E-value=0.032 Score=57.00 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
++.++|+|+||+|||+++..+|.. .+..+..+++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 457999999999999999999854 3556655555
No 482
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.79 E-value=0.0097 Score=62.38 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~ 137 (495)
++-++|.|+||+||||++..+|..+ .+..+..+++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 4679999999999999999999765 2344444444
No 483
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.78 E-value=0.0059 Score=54.22 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
+|+|+|++||||||++..|+.++ | ..+++.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---N--IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEECcHH
Confidence 58999999999999999999755 3 345677644
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.77 E-value=0.042 Score=58.72 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-HHHHHcCCceEEEec
Q 011010 102 SVIMFVGLQGSGKTTTCTKYA-YYHQKKGWKPALVCA 137 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa-~~l~~~G~kVaIVs~ 137 (495)
.+++|+|++|||||||+..++ .-+...+.....++.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 479999999999999999953 233332444555554
No 485
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.74 E-value=0.0042 Score=57.76 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccCC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~~ 140 (495)
..+|+|+|.+||||||++..|+..+ .+.++++|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHH
Confidence 4689999999999999999999543 3678888864
No 486
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.71 E-value=0.0032 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=16.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-HHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYA-YYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa-~~l 125 (495)
..+++|+|++||||||++..|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999999 765
No 487
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.68 E-value=0.0073 Score=57.21 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEecc
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D 138 (495)
+..|+|+|++||||||++..|+.+|. ..+++.|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC-----VCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT-----CEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-----CceecHH
Confidence 45799999999999999999997762 4556664
No 488
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.66 E-value=0.0053 Score=57.15 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEec-cCCc
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFR 141 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~-D~~R 141 (495)
.|+|+|+|||||||++..|+..+ ...+++. |..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHH
Confidence 48899999999999999998543 3455666 3444
No 489
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.64 E-value=0.0071 Score=53.93 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCceEEEeccC
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~kVaIVs~D~ 139 (495)
..+|+|+|.+||||||++..|+..| |. .+++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g~--~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---KL--EVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---TC--CEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 3579999999999999999999654 33 4566654
No 490
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.64 E-value=0.0059 Score=57.93 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
.+++|+||+||||||+++.|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999996543
No 491
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.051 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYHQ 126 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l~ 126 (495)
++|.|+||+||||++..++..+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 492
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.61 E-value=0.015 Score=55.56 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 011010 104 IMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 104 I~ivG~~GvGKTTl~~kLa~~l 125 (495)
++|+|+||+||||++..++..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999655
No 493
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.58 E-value=0.0072 Score=56.96 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.|+|+|+|||||||++..|+.+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999776
No 494
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.56 E-value=0.008 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
..+++|+|+.||||||++..|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3489999999999999999999776
No 495
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.065 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 011010 101 PSVIMFVGLQGSGKTTTCTKYAYY 124 (495)
Q Consensus 101 ~~vI~ivG~~GvGKTTl~~kLa~~ 124 (495)
...++|.|++|+||||++..|+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999964
No 496
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.54 E-value=0.0077 Score=56.15 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.|+|+|+|||||||++..|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999766
No 497
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.54 E-value=0.0086 Score=59.84 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l 125 (495)
.+++|+|++|+||||++..|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 479999999999999999999888
No 498
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.48 E-value=0.018 Score=64.88 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCceEEEeccCCcchhHHHHHhhh
Q 011010 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNA 152 (495)
Q Consensus 103 vI~ivG~~GvGKTTl~~kLa~~l~~-~G~kVaIVs~D~~R~~a~dqL~~~a 152 (495)
+.+|.|+||+||||++..++.++.+ .+.+|++++. ...|.++|....
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~l 420 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEKI 420 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES---SHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHH
Confidence 5788999999999999999999887 5777776665 345566665443
No 499
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.45 E-value=0.048 Score=56.34 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCc--eEEEecc
Q 011010 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK--PALVCAD 138 (495)
Q Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLa~~l~~~G~k--VaIVs~D 138 (495)
+...++|+|++|+||||+++.|+.+..+++.. +.++.+|
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 34579999999999999999999988775444 3344444
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.41 E-value=0.016 Score=61.02 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 011010 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (495)
Q Consensus 102 ~vI~ivG~~GvGKTTl~~kLa~~l~~ 127 (495)
+.++|+|+||+||||++..|+..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 45889999999999999999988765
Done!