Query 011011
Match_columns 495
No_of_seqs 272 out of 2521
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 8.3E-56 2.8E-60 459.7 24.4 331 54-493 150-489 (503)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.9E-55 1.3E-59 458.3 28.3 333 54-493 173-524 (536)
3 2d1s_A Luciferase, luciferin 4 100.0 7.5E-55 2.6E-59 457.1 26.4 328 58-493 191-532 (548)
4 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.9E-54 6.5E-59 453.3 27.4 331 54-493 177-520 (539)
5 3rix_A Luciferase, luciferin 4 100.0 5.8E-55 2E-59 458.4 23.1 330 57-493 188-530 (550)
6 3nyq_A Malonyl-COA ligase; A/B 100.0 3.1E-54 1.1E-58 447.9 27.2 335 54-493 150-497 (505)
7 3g7s_A Long-chain-fatty-acid-- 100.0 1.9E-54 6.6E-59 454.4 25.7 333 58-493 179-531 (549)
8 1pg4_A Acetyl-COA synthetase; 100.0 3.1E-53 1.1E-57 453.2 31.1 336 55-493 252-610 (652)
9 3e7w_A D-alanine--poly(phospho 100.0 9.1E-53 3.1E-57 438.0 32.0 357 20-493 116-492 (511)
10 3r44_A Fatty acyl COA syntheta 100.0 2.3E-53 7.8E-58 442.9 27.2 329 54-493 165-502 (517)
11 3etc_A AMP-binding protein; ad 100.0 6E-53 2.1E-57 445.0 30.2 332 55-493 221-568 (580)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.5E-53 8.7E-58 441.4 26.5 330 55-493 149-493 (504)
13 1v25_A Long-chain-fatty-acid-C 100.0 9.7E-54 3.3E-58 448.1 22.2 330 55-493 172-525 (541)
14 3o83_A Peptide arylation enzym 100.0 8.6E-54 2.9E-58 448.8 21.0 331 54-493 186-529 (544)
15 3c5e_A Acyl-coenzyme A synthet 100.0 1.5E-52 5.2E-57 441.3 29.7 333 55-493 202-551 (570)
16 1amu_A GRSA, gramicidin synthe 100.0 1E-52 3.5E-57 441.9 26.3 322 55-493 178-518 (563)
17 1ry2_A Acetyl-coenzyme A synth 100.0 1.7E-52 5.9E-57 447.8 26.6 345 54-493 257-626 (663)
18 3fce_A D-alanine--poly(phospho 100.0 1.8E-52 6.2E-57 435.9 25.8 335 54-493 139-493 (512)
19 4gr5_A Non-ribosomal peptide s 100.0 5.3E-53 1.8E-57 445.3 19.8 329 54-493 209-560 (570)
20 3rg2_A Enterobactin synthase c 100.0 7E-52 2.4E-56 440.6 27.1 332 54-493 179-523 (617)
21 3l8c_A D-alanine--poly(phospho 100.0 4.6E-52 1.6E-56 433.9 24.5 362 20-493 116-501 (521)
22 4dg8_A PA1221; ANL superfamily 100.0 5E-52 1.7E-56 440.6 24.0 322 55-493 160-502 (620)
23 3ivr_A Putative long-chain-fat 100.0 1.2E-52 4.2E-57 436.9 18.7 326 54-493 155-490 (509)
24 2v7b_A Benzoate-coenzyme A lig 100.0 4.4E-52 1.5E-56 434.8 22.9 333 55-493 179-521 (529)
25 3ipl_A 2-succinylbenzoate--COA 100.0 8.2E-52 2.8E-56 429.9 23.9 320 54-493 158-486 (501)
26 3tsy_A Fusion protein 4-coumar 100.0 4.2E-52 1.4E-56 464.5 23.1 334 53-493 219-571 (979)
27 2vsq_A Surfactin synthetase su 100.0 4.9E-49 1.7E-53 450.5 32.1 326 54-493 602-949 (1304)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.9E-50 2.7E-54 423.4 22.5 337 53-493 161-556 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 9.7E-49 3.3E-53 413.9 26.0 332 55-493 172-552 (576)
30 3ite_A SIDN siderophore synthe 100.0 3.9E-49 1.3E-53 415.5 17.5 339 55-493 171-532 (562)
31 4gs5_A Acyl-COA synthetase (AM 100.0 3.3E-48 1.1E-52 384.3 17.3 299 58-493 36-343 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 5.3E-47 1.8E-51 386.8 24.4 346 38-493 62-426 (436)
33 2y4o_A Phenylacetate-coenzyme 100.0 4.6E-46 1.6E-50 380.6 25.6 341 37-493 68-433 (443)
34 2y27_A Phenylacetate-coenzyme 100.0 9E-46 3.1E-50 377.7 25.0 340 38-493 67-428 (437)
35 3t5a_A Long-chain-fatty-acid-- 100.0 1E-40 3.5E-45 344.6 16.0 247 53-383 177-480 (480)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.5E-32 1.2E-36 271.0 16.4 270 28-394 57-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 1.6E-09 5.4E-14 87.0 8.4 93 382-493 1-99 (109)
38 4b2g_A GH3-1 auxin conjugating 98.9 1.2E-08 4E-13 104.9 15.0 132 248-407 308-458 (609)
39 3gxs_A Phenylacetate-coenzyme 98.9 3.3E-09 1.1E-13 84.9 8.2 93 382-493 1-99 (109)
40 4epl_A Jasmonic acid-amido syn 98.8 1.4E-07 4.7E-12 96.6 19.7 136 258-419 316-473 (581)
41 4eql_A 4-substituted benzoates 98.8 8.8E-08 3E-12 98.3 17.4 134 247-408 302-447 (581)
42 2cvi_A 75AA long hypothetical 48.1 37 0.0013 24.2 5.5 35 399-433 16-50 (83)
43 3ni2_A 4-coumarate:COA ligase; 47.5 1.1E+02 0.0039 30.5 11.1 97 57-161 35-138 (536)
44 2zbc_A 83AA long hypothetical 43.9 44 0.0015 23.6 5.4 33 399-431 16-48 (83)
45 3g7s_A Long-chain-fatty-acid-- 43.6 1.9E+02 0.0066 28.8 12.1 102 57-160 32-140 (549)
46 3rix_A Luciferase, luciferin 4 41.0 72 0.0025 32.1 8.4 83 78-161 50-139 (550)
47 3ivr_A Putative long-chain-fat 39.4 1.5E+02 0.005 29.3 10.3 93 57-159 19-118 (509)
48 1v25_A Long-chain-fatty-acid-C 34.3 2.6E+02 0.009 27.7 11.3 96 57-158 31-133 (541)
49 3t5a_A Long-chain-fatty-acid-- 33.3 2.2E+02 0.0076 27.5 10.5 99 57-159 37-147 (480)
50 2djw_A Probable transcriptiona 32.1 74 0.0025 23.0 5.1 40 398-437 15-54 (92)
51 2v7b_A Benzoate-coenzyme A lig 31.2 2.2E+02 0.0074 28.2 10.1 92 57-158 36-134 (529)
52 3r44_A Fatty acyl COA syntheta 29.0 3.6E+02 0.012 26.4 11.3 94 57-158 29-129 (517)
53 1amu_A GRSA, gramicidin synthe 27.8 3.5E+02 0.012 27.0 11.0 89 57-155 52-147 (563)
54 1t5h_X 4-chlorobenzoyl COA lig 27.8 3E+02 0.01 27.0 10.3 91 57-155 15-114 (504)
55 3kxw_A Saframycin MX1 syntheta 26.8 3E+02 0.01 27.5 10.4 96 57-158 24-129 (590)
56 3etc_A AMP-binding protein; ad 25.8 3.1E+02 0.011 27.6 10.2 93 57-154 69-168 (580)
57 2d1s_A Luciferase, luciferin 4 24.6 3.2E+02 0.011 27.2 9.9 81 78-159 52-139 (548)
58 4gr5_A Non-ribosomal peptide s 22.7 3.7E+02 0.012 26.9 10.0 88 57-154 88-182 (570)
59 2trc_P Phosducin, MEKA, PP33; 22.4 25 0.00086 30.7 0.9 18 67-85 3-20 (217)
60 3gqw_A Fatty acid AMP ligase; 21.8 4E+02 0.014 26.4 10.1 81 77-158 48-142 (576)
61 3c5e_A Acyl-coenzyme A synthet 21.7 3.3E+02 0.011 27.3 9.4 97 57-158 56-160 (570)
62 2cg4_A Regulatory protein ASNC 21.3 2E+02 0.007 22.8 6.4 36 398-433 82-117 (152)
63 4fuq_A Malonyl COA synthetase; 20.8 3.1E+02 0.01 26.9 8.8 80 78-158 28-114 (503)
64 3o83_A Peptide arylation enzym 20.0 3.8E+02 0.013 26.5 9.4 87 57-153 43-136 (544)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.3e-56 Score=459.72 Aligned_cols=331 Identities=27% Similarity=0.406 Sum_probs=285.2
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
...+++|+++|+|||||||.||||++||+++.+....+...++++++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 229 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP 229 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 3567899999999999999999999999999998888888889999999999999999999765 45567888888774
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 209 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (495)
++..+++.++ ++|++.++|+++..++.....
T Consensus 230 ~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~--------------------------------------------- 262 (503)
T 4fuq_A 230 KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL--------------------------------------------- 262 (503)
T ss_dssp SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC---------------------------------------------
T ss_pred CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc---------------------------------------------
Confidence 6888999888 899999999999877652100
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011 210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 288 (495)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 288 (495)
....++.+|.+++||+++++++ +.+.+.+|.++++.||+||++......
T Consensus 263 ------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 312 (503)
T 4fuq_A 263 ------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP 312 (503)
T ss_dssp ------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC
T ss_pred ------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC
Confidence 0022345699999999999987 555667899999999999998765544
Q ss_pred CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011 289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368 (495)
Q Consensus 289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~ 368 (495)
.......+++|+|+++++++|+|+++++++|+|+.|||+|+||+++.||+++|+.|++.|..+|||+|||+|++++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~---- 388 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE---- 388 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----
Confidence 3444567889999999999999998999999999999999999999999999999999999899999999999998
Q ss_pred CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.++|+++++
T Consensus 389 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~----------- 450 (503)
T 4fuq_A 389 ------RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG----------- 450 (503)
T ss_dssp ------TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred ------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC-----------
Confidence 8999999999999998 8999999999999999999999999987643 46788887653
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+.| ++|.++++.+.+.|||+
T Consensus 451 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 489 (503)
T 4fuq_A 451 -----ATIDEAQVLHGLDGQLAKFKMP-----KKVIFVDDLPRNTMGKV 489 (503)
T ss_dssp -----CCCCHHHHHHHHBTTBCGGGCC-----SEEEEESCCCBCTTSCB
T ss_pred -----CCCCHHHHHHHHHhhcccCCCC-----CEEEEECCCCCCcccce
Confidence 4557789999999999999744 88999999999999997
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.9e-55 Score=458.34 Aligned_cols=333 Identities=28% Similarity=0.465 Sum_probs=286.2
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc----ccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceE
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL 128 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~ 128 (495)
...+++|+++|+|||||||.||||++||+++.+.+..... .+++.++|++++++|++|.+++.. .+.++..|+++
T Consensus 173 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 252 (536)
T 3ni2_A 173 VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252 (536)
T ss_dssp CCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCE
T ss_pred CCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEE
Confidence 4567899999999999999999999999999877665433 456788999999999999999866 45668899998
Q ss_pred Eec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011 129 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 205 (495)
Q Consensus 129 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (495)
++. ++..+++.++++++|++.++|+++..+++.....
T Consensus 253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------- 292 (536)
T 3ni2_A 253 LIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD---------------------------------------- 292 (536)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG----------------------------------------
T ss_pred EEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc----------------------------------------
Confidence 885 6889999999999999999999998775421100
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCcc
Q 011011 206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSP 283 (495)
Q Consensus 206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~ 283 (495)
...++.+|.+++||+++++++. .+.+.+ ++++++.||+||++.
T Consensus 293 -----------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 337 (536)
T 3ni2_A 293 -----------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGP 337 (536)
T ss_dssp -----------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSS
T ss_pred -----------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccch
Confidence 0234456999999999999984 455667 899999999999987
Q ss_pred ceeccC-----CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011 284 VIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 358 (495)
Q Consensus 284 ~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD 358 (495)
+++.+. ......+++|.|+++++++|+|+++++++|.|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGD 417 (536)
T 3ni2_A 338 VLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417 (536)
T ss_dssp EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred hhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEccc
Confidence 655431 223466889999999999999999999999999999999999999999999999999998899999999
Q ss_pred eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHH
Q 011011 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE 434 (495)
Q Consensus 359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~ 434 (495)
+|++++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|++.++
T Consensus 418 l~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~- 485 (536)
T 3ni2_A 418 IGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK- 485 (536)
T ss_dssp EEEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-
T ss_pred EEEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC-
Confidence 999998 8999999999999998 899999999999999999999999999754 346788887653
Q ss_pred HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+. +++|.++++.+.+.+||+
T Consensus 486 ---------------~~~~~~~l~~~l~~~l~~~~~-----p~~i~~v~~lP~t~~GKi 524 (536)
T 3ni2_A 486 ---------------SQATEDEIKQYISKQVIFYKR-----IKRVFFIEAIPKAPSGKI 524 (536)
T ss_dssp ---------------CCCCHHHHHHHHHTTSCGGGC-----CSEEEECSCCCBCTTSCB
T ss_pred ---------------CCCCHHHHHHHHHHhccCCcc-----ccEEEEEecCCCCCCCCe
Confidence 455778999999999999984 478999999999999997
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.5e-55 Score=457.08 Aligned_cols=328 Identities=26% Similarity=0.410 Sum_probs=283.7
Q ss_pred CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhH-hHhhcCceEEec--
Q 011011 58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT-- 131 (495)
Q Consensus 58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~~-- 131 (495)
++|+++|+|||||||.||||++||+++.......... +++.++|++++++|++|.+++...+ .++ .|+++++.
T Consensus 191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~ 269 (548)
T 2d1s_A 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK 269 (548)
T ss_dssp TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence 3899999999999999999999999998887776655 6788999999999999999987644 446 99998874
Q ss_pred -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011 132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 210 (495)
Q Consensus 132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (495)
++..+++.++++++|+++++|+++..|.+.....
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 304 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN--------------------------------------------- 304 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc---------------------------------------------
Confidence 6899999999999999999999998875421000
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceecc
Q 011011 211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR 288 (495)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~ 288 (495)
...++.+|.+++||+++++++ +.+.+.+ +.++++.||+||++..++..
T Consensus 305 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 354 (548)
T 2d1s_A 305 ------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354 (548)
T ss_dssp ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred ------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence 012345689999999999987 5555667 68899999999998877665
Q ss_pred CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011 289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368 (495)
Q Consensus 289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~ 368 (495)
.......+++|+|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.|++.|+.+|||+|||+|++++
T Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~---- 430 (548)
T 2d1s_A 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE---- 430 (548)
T ss_dssp CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----
Confidence 4444567899999999999999988899999999999999999999999999999999998899999999999998
Q ss_pred CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|+++++
T Consensus 431 ------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~----------- 492 (548)
T 2d1s_A 431 ------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG----------- 492 (548)
T ss_dssp ------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred ------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC-----------
Confidence 8999999999999997 9999999999999999999999999998653 56788887643
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccc-cEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+. ++ +|.++++.+.+.+||+
T Consensus 493 -----~~~~~~~l~~~~~~~l~~~~~-----p~~~i~~v~~lP~t~~GKi 532 (548)
T 2d1s_A 493 -----KNMTEKEVMDYVASQVSNAKR-----LRGGVRFVDEVPKGLTGKI 532 (548)
T ss_dssp -----CCCCHHHHHHHHHTTSCGGGS-----CTTCEEECSSCCBCTTSCB
T ss_pred -----CCCCHHHHHHHHHHhcccccc-----ccccEEEccCCCCCCcchh
Confidence 345678999999999998874 46 8999999999999997
No 4
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.9e-54 Score=453.31 Aligned_cols=331 Identities=19% Similarity=0.297 Sum_probs=282.2
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~ 131 (495)
....++|+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3457899999999999999999999999999988888777788999999999999999999875 56678999999885
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..+++.....
T Consensus 257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------- 293 (539)
T 1mdb_A 257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------------------------- 293 (539)
T ss_dssp SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------
Confidence 6889999999999999999999998887643210
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..+..
T Consensus 294 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 341 (539)
T 1mdb_A 294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR 341 (539)
T ss_dssp --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred --------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence 023345699999999999987 45556789999999999996543332
Q ss_pred cCCC-CCCccccccCcCC-cEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011 288 RRPT-CNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365 (495)
Q Consensus 288 ~~~~-~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~ 365 (495)
.... ....+++|+|+++ .+++|+| +.++++|+|+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++
T Consensus 342 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~- 419 (539)
T 1mdb_A 342 LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR- 419 (539)
T ss_dssp TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-
Confidence 1111 1234689999976 4899999 4589999999999999999999999999999999998899999999999998
Q ss_pred CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR 441 (495)
Q Consensus 366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~ 441 (495)
+|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|+++.
T Consensus 420 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------- 480 (539)
T 1mdb_A 420 ---------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD--------- 480 (539)
T ss_dssp ---------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred ---------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------
Confidence 8999999999999996 9999999999999999999999999998653 5678888752
Q ss_pred cCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 442 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 442 ~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++ |+.|+. +++|.++++.+.+.|||+
T Consensus 481 --------~~~~~~~l~~~l~~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 520 (539)
T 1mdb_A 481 --------EAPKAAELKAFLRERGLAAYKI-----PDRVEFVESFPQTGVGKV 520 (539)
T ss_dssp --------SCCCHHHHHHHHHHTTCCGGGS-----CSEEEECSSCCBCTTSCB
T ss_pred --------CCCCHHHHHHHHHhCCCCcccC-----CCEEEEeccCCCCCCcCE
Confidence 234678899999997 999874 488999999999999997
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.8e-55 Score=458.44 Aligned_cols=330 Identities=25% Similarity=0.363 Sum_probs=205.4
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.++|+++|+|||||||.||||++||+++.......... +++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 267 (550)
T 3rix_A 188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYR 267 (550)
T ss_dssp TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence 46889999999999999999999999998877666544 4678899999999999999998778889999999885
Q ss_pred -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011 132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 210 (495)
Q Consensus 132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (495)
++..+++.++++++|++.++|+++..++......
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 302 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID--------------------------------------------- 302 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc---------------------------------------------
Confidence 6889999999999999999999998876531100
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCe-eeeccCcccCccceecc
Q 011011 211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAAR 288 (495)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~ 288 (495)
...++.+|.+++||+++++++ +.+.+.++.. +++.||+||++..++..
T Consensus 303 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 352 (550)
T 3rix_A 303 ------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352 (550)
T ss_dssp ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred ------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecC
Confidence 012345699999999999987 5555678875 89999999999888777
Q ss_pred CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011 289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368 (495)
Q Consensus 289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~ 368 (495)
.......+++|+|+++++++|+|+++++++++|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||+|++++
T Consensus 353 ~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~---- 428 (550)
T 3rix_A 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE---- 428 (550)
T ss_dssp CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----
Confidence 7666778899999999999999998999999999999999999999999999999999998899999999999998
Q ss_pred CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.++|++.++
T Consensus 429 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~----------- 490 (550)
T 3rix_A 429 ------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG----------- 490 (550)
T ss_dssp ------TCCEEEC-------------------------------------------------------------------
T ss_pred ------CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC-----------
Confidence 8999999999999998 8999999999999999999999999998764 35577776543
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccc-cEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.++ .++ .|.++++.+.+.+||+
T Consensus 491 -----~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi 530 (550)
T 3rix_A 491 -----KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKL 530 (550)
T ss_dssp --------------------------------------------------
T ss_pred -----CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCcce
Confidence 34466789999999998875 344 6899999999999986
No 6
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.1e-54 Score=447.90 Aligned_cols=335 Identities=26% Similarity=0.363 Sum_probs=277.7
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
...+++|+++|+|||||||.||||++||+++.+....+...+++.++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 3567899999999999999999999999999998888888889999999999999999999876 56678999999874
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 209 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (495)
++..+++.+ ++++|.++++|+++..++........
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------ 266 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------------------------------ 266 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH------------------------------------------
T ss_pred CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch------------------------------------------
Confidence 578888888 78999999999999888764321100
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011 210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR 288 (495)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~ 288 (495)
....++.+|.+++||++++++. +.+.+.+++++++.||+||++..++..
T Consensus 267 ------------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 316 (505)
T 3nyq_A 267 ------------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVR 316 (505)
T ss_dssp ------------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred ------------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccC
Confidence 0011223489999999999987 455566799999999999998777665
Q ss_pred CCCCCCccccccCcCCcEEEEEeCCCCCcCCC---CCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011 289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365 (495)
Q Consensus 289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~---g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~ 365 (495)
.......+++|+|+++++++|+|++ +++++. |+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++
T Consensus 317 ~~~~~~~~~vG~p~~~~~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~- 394 (505)
T 3nyq_A 317 ADGEPRAGTVGVPLPGVELRLVEED-GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP- 394 (505)
T ss_dssp TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred CCCCCCCCCcccCCCCCEEEEECCC-CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC-
Confidence 5555667899999999999999954 777765 89999999999999999999999999999899999999999998
Q ss_pred CCCCCccccCCeEEEEccc-cceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHH
Q 011011 366 HSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK 440 (495)
Q Consensus 366 ~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~ 440 (495)
+|+++|+||+ ||+|++ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|++...
T Consensus 395 ---------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~------- 457 (505)
T 3nyq_A 395 ---------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP------- 457 (505)
T ss_dssp ---------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-------
T ss_pred ---------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-------
Confidence 8999999998 588997 999999999999999999999999998865 357789988642
Q ss_pred HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
....+.++++++++++|+.|+.| ++|.++++.+.+.|||+
T Consensus 458 --------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 497 (505)
T 3nyq_A 458 --------AAPPALGTLADHVAARLAPHKRP-----RVVRYLDAVPRNDMGKI 497 (505)
T ss_dssp --------TSCCCHHHHHHHHHHHTCGGGSC-----SEEEECSCCCC------
T ss_pred --------CCCCCHHHHHHHHHhhCCCCcCc-----cEEEEECCCCCCCCcCe
Confidence 13456789999999999999854 78999999999999997
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.9e-54 Score=454.38 Aligned_cols=333 Identities=24% Similarity=0.403 Sum_probs=264.0
Q ss_pred CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---chH
Q 011011 58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR 134 (495)
Q Consensus 58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~~~ 134 (495)
++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++. ++.
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 258 (549)
T 3g7s_A 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE 258 (549)
T ss_dssp TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence 38999999999999999999999999999888888888999999999999999999988777778889988874 789
Q ss_pred hHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHH
Q 011011 135 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID 214 (495)
Q Consensus 135 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 214 (495)
.+++.++++++|+++++|+++..|+........
T Consensus 259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------------- 291 (549)
T 3g7s_A 259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNK----------------------------------------------- 291 (549)
T ss_dssp HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------------------------------------------
T ss_pred HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------------------------------------------
Confidence 999999999999999999999988765322100
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHH----cC---CeeeeccCcccCcccee
Q 011011 215 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTESSPVIA 286 (495)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~----~g---~~v~~~YG~TE~~~~~~ 286 (495)
...++.+|.+++||+++++++ +.+.+. ++ +++++.||+||++.+++
T Consensus 292 --------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 345 (549)
T 3g7s_A 292 --------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT 345 (549)
T ss_dssp --------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred --------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence 012345699999999999987 444444 56 89999999999998777
Q ss_pred ccCCCC-CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccC--CCC--ccccCceee
Q 011011 287 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGW 361 (495)
Q Consensus 287 ~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~--~~~--~~~TGDl~~ 361 (495)
...... ...+++|.|+++++++|+|+++++++|.|+.|||+|+||+++.|||++|+.|++.|. .+| ||+|||+|+
T Consensus 346 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF 425 (549)
T ss_dssp ECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEE
T ss_pred cCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEE
Confidence 655433 456789999999999999988899999999999999999999999999999999983 466 999999999
Q ss_pred eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM 437 (495)
Q Consensus 362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~ 437 (495)
+++ +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|+++++.
T Consensus 426 ~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--- 491 (549)
T 3g7s_A 426 IDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY--- 491 (549)
T ss_dssp ECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT---
T ss_pred EcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc---
Confidence 998 8999999999999998 9999999999999999999999999998764 467888876430
Q ss_pred HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
....+.++++++++++|+.|+.| ++|.++++.+.+.|||+
T Consensus 492 -----------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 492 -----------RGKVDEEDIIEWVRERISGYKRV-----REVEFVEELPRTASGKL 531 (549)
T ss_dssp -----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC-------
T ss_pred -----------cCcCCHHHHHHHHHHhccCcccc-----eEEEEeccCCCCCCcCE
Confidence 13457789999999999999854 78889999999999997
No 8
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.1e-53 Score=453.22 Aligned_cols=336 Identities=17% Similarity=0.176 Sum_probs=280.1
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHH-HHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
..+++|+++|+|||||||.||||++||++++... ..+...+++.++|++++.+|++|++++.. .+.++..|+++++.
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 4568999999999999999999999999987655 34555678999999999999999999854 66789999998874
Q ss_pred ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011 132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 205 (495)
Q Consensus 132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (495)
++..+++.++++++|++.++|+++..|.+......
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------- 372 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI--------------------------------------- 372 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT---------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc---------------------------------------
Confidence 57889999999999999999999987755311000
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHcC---CeeeeccCcccC
Q 011011 206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG---VKVQVGYGLTES 281 (495)
Q Consensus 206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~g---~~v~~~YG~TE~ 281 (495)
....++.+|.+++||+++++++. .+.+.+| +++++.||+||+
T Consensus 373 ----------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 373 ----------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp ----------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred ----------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 00134556999999999999874 4556677 899999999999
Q ss_pred ccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhccC--CCCccc
Q 011011 282 SPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLN 355 (495)
Q Consensus 282 ~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~--~~~~~~ 355 (495)
+..++...+. ....+++|+|+++++++|+|+ .++++|.|+.|||+|+| |++++|||++|+.+.+.|. .+|||+
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~ 497 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 497 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence 8766554432 356789999999999999995 58899999999999999 7999999999999988763 378999
Q ss_pred cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecC
Q 011011 356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD 431 (495)
Q Consensus 356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~ 431 (495)
|||+|++++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|+++
T Consensus 498 TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~ 566 (652)
T 1pg4_A 498 SGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN 566 (652)
T ss_dssp EEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred CCcEEEEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEEC
Confidence 999999998 8999999999999998 899999999999999999999999999764 3578999987
Q ss_pred hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
++. ...+...++++++++++|+.|+. ++.|.++++.+.+.+||+
T Consensus 567 ~~~-------------~~~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 567 HGE-------------EPSPELYAEVRNWVRKEIGPLAT-----PDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp TTC-------------CCCHHHHHHHHHHHHHHTCGGGC-----CSEEEECSCCCBCTTSCB
T ss_pred CCC-------------CCCHHHHHHHHHHHHHhCCCCcC-----CeEEEEcCCCCCCCCccc
Confidence 530 00111247788999999988874 488999999999999997
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9.1e-53 Score=437.97 Aligned_cols=357 Identities=24% Similarity=0.269 Sum_probs=290.1
Q ss_pred CCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCC
Q 011011 20 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN 99 (495)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~ 99 (495)
..+..++++++........ .......++|+++|+|||||||.||||++||+++.+....+...+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 183 (511)
T 3e7w_A 116 QQIQTVSAEELLENEGGSV------------SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG 183 (511)
T ss_dssp CSSCEEEHHHHHTSCSCCC------------CGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTT
T ss_pred cccceecHhhhhccccCCc------------cccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCc
Confidence 3466778887765432210 1123457899999999999999999999999999998888888889999
Q ss_pred CcEEEEECChhhHHHHHHhHhHhhcCceEEec------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHH
Q 011011 100 GDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR 173 (495)
Q Consensus 100 ~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 173 (495)
+|++++++|++|.+++...+.++..|+++++. ++..+++.++++++|++.++|+++..++.....
T Consensus 184 ~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------- 254 (511)
T 3e7w_A 184 GKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF--------- 254 (511)
T ss_dssp TCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------
T ss_pred cceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------
Confidence 99999999999999987778889999999874 577899999999999999999998876542100
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEec
Q 011011 174 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 253 (495)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g 253 (495)
....+..+|.+++|
T Consensus 255 ------------------------------------------------------------------~~~~~~~l~~~~~~ 268 (511)
T 3e7w_A 255 ------------------------------------------------------------------SQDLLPHADTFMFC 268 (511)
T ss_dssp ------------------------------------------------------------------STTTCTTCCEEEEC
T ss_pred ------------------------------------------------------------------ccccCCcccEEEEe
Confidence 00223455899999
Q ss_pred cCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCC-----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEE
Q 011011 254 GGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 326 (495)
Q Consensus 254 g~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl 326 (495)
|+++++++ +.+.+.+ ++++++.||+||++..++.... ......++|.|+++++++|+|+ .++++|+|+.|||
T Consensus 269 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl 347 (511)
T 3e7w_A 269 GEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEI 347 (511)
T ss_dssp SSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEE
T ss_pred cCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEE
Confidence 99999987 5555667 8999999999999876654321 1234567999999999999995 4899999999999
Q ss_pred EEccCCcchhccCCchhhhhccCC-CC--ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHH
Q 011011 327 KVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE 403 (495)
Q Consensus 327 ~v~~p~~~~gY~~~~~~t~~~~~~-~~--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~ 403 (495)
+|+||+++.|||++|+.|+++|.. ++ ||+|||+|++ + ||+++++||+||+|++ +|++|+|.|||+
T Consensus 348 ~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~ 415 (511)
T 3e7w_A 348 VIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEF 415 (511)
T ss_dssp EEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHH
T ss_pred EEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHH
Confidence 999999999999999999999832 23 7999999998 4 6999999999999998 999999999999
Q ss_pred HHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccE
Q 011011 404 AALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPI 479 (495)
Q Consensus 404 ~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 479 (495)
+|.+||.|.+|+|++.++ +.+.|+|++.++.. .......++++++++++|+.|+ .+++|
T Consensus 416 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------~~~~~~~~~l~~~l~~~L~~~~-----~P~~~ 478 (511)
T 3e7w_A 416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF------------EKEFQLTSAIKKELAASLPAYM-----IPRKF 478 (511)
T ss_dssp HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC------------SSHHHHHHHHHHHHHHHSCGGG-----SCSEE
T ss_pred HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc------------cchhhHHHHHHHHHHhhCchhh-----CCeeE
Confidence 999999999999998754 35778888864300 0000113678888888888887 44889
Q ss_pred EEecCCCCCCCCee
Q 011011 480 HVVDEPFTVNFLCL 493 (495)
Q Consensus 480 ~~~~~~~~~~~~~l 493 (495)
.++++.+.+.+||+
T Consensus 479 ~~v~~lP~t~~GKi 492 (511)
T 3e7w_A 479 IYQDHIQMTANGKI 492 (511)
T ss_dssp EECSCCCBCTTSCB
T ss_pred EEeccCCCCCCcCc
Confidence 99999999999997
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.3e-53 Score=442.88 Aligned_cols=329 Identities=26% Similarity=0.364 Sum_probs=280.4
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~ 244 (517)
T 3r44_A 165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ 244 (517)
T ss_dssp CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence 456789999999999999999999999999999888888888999999999999999999998766665589888874
Q ss_pred -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011 132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 210 (495)
Q Consensus 132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (495)
++..+++.++++++|++.++|+++..|.......
T Consensus 245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------------- 279 (517)
T 3r44_A 245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA--------------------------------------------- 279 (517)
T ss_dssp CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH---------------------------------------------
T ss_pred CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc---------------------------------------------
Confidence 6899999999999999999999998876532111
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011 211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 290 (495)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~ 290 (495)
...++.+|.+++||+++++++.+.+...++++++.||+||++..++....
T Consensus 280 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 329 (517)
T 3r44_A 280 ------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329 (517)
T ss_dssp ------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred ------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence 01234569999999999999866666669999999999999876665432
Q ss_pred C--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011 291 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368 (495)
Q Consensus 291 ~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~ 368 (495)
. ....+++|.|.++++++++|+ ++.+++.| .|||+|+||+++.||+++|+.|++.| .+|||+|||+|++++
T Consensus 330 ~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~---- 402 (517)
T 3r44_A 330 EDALRKAGSAGRATMFTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD---- 402 (517)
T ss_dssp GGTTTTTTCCBEECTTEEEEEECT-TSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT----
T ss_pred ccccccCCCCCcCCCCeEEEEECC-CCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC----
Confidence 2 345688999999999999994 57888888 89999999999999999999999999 589999999999998
Q ss_pred CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.++|+.. +
T Consensus 403 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~----------- 463 (517)
T 3r44_A 403 ------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q----------- 463 (517)
T ss_dssp ------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T-----------
T ss_pred ------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C-----------
Confidence 8999999999999997 9999999999999999999999999998654 344555332 1
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+.| ++|.++++.+.+.+||+
T Consensus 464 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 502 (517)
T 3r44_A 464 -----NEVSEQQIVEYCGTRLARYKLP-----KKVIFAEAIPRNPTGKI 502 (517)
T ss_dssp -----TTCCHHHHHHHHHHHSCGGGSC-----SEEEECSCCCBCTTCCB
T ss_pred -----CCCCHHHHHHHHHHhCCCCCCC-----CEEEEECCCCCCCCcCc
Confidence 3457789999999999999844 78999999999999997
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=6e-53 Score=444.99 Aligned_cols=332 Identities=22% Similarity=0.278 Sum_probs=273.8
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-- 131 (495)
...++|+++|+|||||||.||||+++|.++..........+++.+++++++..|++|..+... .+.++..|+++++.
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 300 (580)
T 3etc_A 221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY 300 (580)
T ss_dssp SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 467899999999999999999999999998877766666678899999999999999888765 45668889888764
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..|......
T Consensus 301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------------------------------------- 336 (580)
T 3etc_A 301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLS-------------------------------------------- 336 (580)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---------------------------------------------
T ss_pred CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccc--------------------------------------------
Confidence 588999999999999999999999877542000
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++.
T Consensus 337 --------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 337 --------------------------------HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred --------------------------------cCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 022345699999999999997 55666789999999999999877766
Q ss_pred cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc-----CCcchhccCCchhhhhccCCCCccccCceeee
Q 011011 288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362 (495)
Q Consensus 288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~-----p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~ 362 (495)
.+......+++|+|+++++++|+|++ ++++|+|+.|||+|+| ++++.||+++|+.|++.|. +|||+|||+|++
T Consensus 385 ~~~~~~~~~~~G~p~~~~~v~ivd~~-g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~ 462 (580)
T 3etc_A 385 FPWMEPKPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWM 462 (580)
T ss_dssp CTTSCCCTTCCBEECTTCEEEEECTT-SCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEE
T ss_pred CCCCCCCCCccccCCCCCEEEEECCC-CCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEE
Confidence 65556678899999999999999965 8999999999999997 7899999999999999995 899999999999
Q ss_pred ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHH
Q 011011 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA 438 (495)
Q Consensus 363 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~ 438 (495)
++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.++.
T Consensus 463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~---- 527 (580)
T 3etc_A 463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY---- 527 (580)
T ss_dssp CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----
T ss_pred CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----
Confidence 98 8999999999999998 7999999999999999999999999998654 466888876530
Q ss_pred HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+...+++++++++.|+.|+. ++.|.++++.+.+.+||+
T Consensus 528 ---------~~~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~t~sGKi 568 (580)
T 3etc_A 528 ---------TPSDSLKNELQDHVKNVTAPYKY-----PRIIEFVPELPKTISGKI 568 (580)
T ss_dssp ---------CCCHHHHHHHHHHHHHHSCGGGC-----CSEEEEECC---------
T ss_pred ---------CCCHHHHHHHHHHHHhhCCCccC-----CeEEEEeCCCCCCCCcCC
Confidence 00122346888889988888874 478999999999999997
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.5e-53 Score=441.38 Aligned_cols=330 Identities=21% Similarity=0.286 Sum_probs=278.2
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCC--CCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~ 131 (495)
...++|+++|+|||||||.||||++||+++.+....+...+++ .++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 228 (504)
T 1t5h_X 149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV 228 (504)
T ss_dssp CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence 4578999999999999999999999999999888777777777 78899999999999999854 56678899999884
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|+++++|+++..|+.......
T Consensus 229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------ 266 (504)
T 1t5h_X 229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------------------------ 266 (504)
T ss_dssp SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT------------------------------------------
T ss_pred CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc------------------------------------------
Confidence 68899999999999999999999988865421000
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
....++.+|.+++||+++++++ +.+.+.++.++++.||+||++.....
T Consensus 267 -------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 315 (504)
T 1t5h_X 267 -------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM 315 (504)
T ss_dssp -------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEE
T ss_pred -------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccc
Confidence 0012345699999999999987 55556779999999999999432222
Q ss_pred cCCCCCCccccccCcCCcEEEEEeCCCC--CcCCCCCccEEEEc-cCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011 288 RRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364 (495)
Q Consensus 288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~--~~~~~g~~GEl~v~-~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~ 364 (495)
. ....+++|.|.++++++++|++++ +++|+|+.|||+|+ ||.++.||+++|+.|++.| .+|||+|||+|++++
T Consensus 316 -~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~ 391 (504)
T 1t5h_X 316 -R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP 391 (504)
T ss_dssp -E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT
T ss_pred -c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC
Confidence 1 245678999999999999996532 89999999999999 9999999999999999999 689999999999998
Q ss_pred CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 440 (495)
Q Consensus 365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~ 440 (495)
||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|+++++
T Consensus 392 ----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~------- 453 (504)
T 1t5h_X 392 ----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG------- 453 (504)
T ss_dssp ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT-------
T ss_pred ----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC-------
Confidence 8999999999999997 9999999999999999999999999998653 57799998753
Q ss_pred HcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 441 RLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.+++++++++ +|+.|+ .+++|.++++.+.+.+||+
T Consensus 454 ---------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 493 (504)
T 1t5h_X 454 ---------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV 493 (504)
T ss_dssp ---------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred ---------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCE
Confidence 34567889999998 899987 4589999999999999997
No 13
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.7e-54 Score=448.14 Aligned_cols=330 Identities=26% Similarity=0.412 Sum_probs=243.9
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHH--hhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~- 131 (495)
..+++|+++|+|||||||.||||++||+++...... ....+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 172 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 172 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred cCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence 456789999999999999999999999999876655 23456788999999999999999987677788899998874
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..|++.....
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------- 288 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------------------------- 288 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-------------------------------------------
Confidence 6889999999999999999999998887643221
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 288 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 288 (495)
...++.+|.+++||+++++++.+.++.+|+++++.||+||++.+++..
T Consensus 289 --------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~ 336 (541)
T 1v25_A 289 --------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQN 336 (541)
T ss_dssp --------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEEC
T ss_pred --------------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecc
Confidence 022345689999999999998554577899999999999998776654
Q ss_pred CCCC-----------CCccccccCcCCcEEEEEeCCCCCcCCC-C-CccEEEEccCCcchhccCCchhhhhccCCCCccc
Q 011011 289 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 355 (495)
Q Consensus 289 ~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~-g-~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~ 355 (495)
.... ...+++|+|+++++++|+|++ ++++|. | +.|||+|+||+++.|||++|+.|+++|..+|||+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~ 415 (541)
T 1v25_A 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR 415 (541)
T ss_dssp CCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEE
T ss_pred cccccccccCccccccccCCCCCcCCCcEEEEECCC-CCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeE
Confidence 3321 134689999999999999954 778874 3 6899999999999999999999999998899999
Q ss_pred cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecC
Q 011011 356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD 431 (495)
Q Consensus 356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~ 431 (495)
|||+|++++ +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.
T Consensus 416 TGDlg~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~ 484 (541)
T 1v25_A 416 TGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR 484 (541)
T ss_dssp EEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred cCCEEEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence 999999998 8999999999999997 9999999999999999999999999998653 566777765
Q ss_pred hHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 432 KEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
. ...+.+++++++++ +|+.|+ .+++|.++++.+.+.+||+
T Consensus 485 ~-----------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 525 (541)
T 1v25_A 485 G-----------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF 525 (541)
T ss_dssp ---------------------------------CCCTTT-----SCSBC--------------
T ss_pred C-----------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCe
Confidence 1 22345678888888 788776 4578889999999999986
No 14
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.6e-54 Score=448.83 Aligned_cols=331 Identities=23% Similarity=0.329 Sum_probs=209.4
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~ 131 (495)
....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 3457899999999999999999999999999998888888889999999999999999999875 56678899999884
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..++......
T Consensus 266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------- 302 (544)
T 3o83_A 266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY------------------------------------------- 302 (544)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT-------------------------------------------
T ss_pred CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc-------------------------------------------
Confidence 6889999999999999999999998887643211
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
...++.+|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus 303 --------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 350 (544)
T 3o83_A 303 --------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR 350 (544)
T ss_dssp --------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred --------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence 022345699999999999987 45556679999999999998754443
Q ss_pred cCCC-CCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011 288 RRPT-CNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365 (495)
Q Consensus 288 ~~~~-~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~ 365 (495)
.... ....+++|+|+ ++++++|+| ++++++|+|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||+|++++
T Consensus 351 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~- 428 (544)
T 3o83_A 351 LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP- 428 (544)
T ss_dssp TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT-
T ss_pred CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC-
Confidence 2211 12346789996 899999999 6689999999999999999999999999999999998899999999999998
Q ss_pred CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR 441 (495)
Q Consensus 366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~ 441 (495)
+|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++..
T Consensus 429 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~--------- 489 (544)
T 3o83_A 429 ---------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN--------- 489 (544)
T ss_dssp ---------TSCEEEEEEEC------------------------------------------------------------
T ss_pred ---------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC---------
Confidence 8999999999999996 9999999999999999999999999998764 4557777653
Q ss_pred cCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 442 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 442 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+..++++++++ .|+.|+.| ++|.++++.+.+.|||+
T Consensus 490 --------~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~~GKi 529 (544)
T 3o83_A 490 --------PELKAVVLRRHLMELGIAQYKLP-----DQIKLIESLPLTAVGKV 529 (544)
T ss_dssp -----------------------------------------------------
T ss_pred --------CCCCHHHHHHHHHhCCCCcccCC-----cEEEEeccCCCCCCCCC
Confidence 23356778888888 79999744 78999999999999986
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.5e-52 Score=441.26 Aligned_cols=333 Identities=20% Similarity=0.243 Sum_probs=276.6
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
...++|+++|+|||||||.||||++||+.+.. ..... ..++++++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus 202 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 202 ETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp CCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 45789999999999999999999999994332 33333 6678899999999999999999874 56678889888764
Q ss_pred ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011 132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 207 (495)
Q Consensus 132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 207 (495)
++..+++.++++++|++.++|+++..+++.. ..
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~------------------------------------- 317 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS------------------------------------- 317 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT-------------------------------------
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc-------------------------------------
Confidence 6889999999999999999999998775420 00
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcccee
Q 011011 208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 286 (495)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~ 286 (495)
...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++
T Consensus 318 ---------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 318 ---------------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp ---------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred ---------------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 012344589999999999987 5555668999999999999987665
Q ss_pred ccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEc-----cCCcchhccCCchhhhhccCCCCccccCceee
Q 011011 287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361 (495)
Q Consensus 287 ~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~-----~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~ 361 (495)
.........+++|+|+++++++|+|+ .++++|.|+.|||+|+ ||+++.||+++|+.|++.|. ++||+|||+|+
T Consensus 365 ~~~~~~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~ 442 (570)
T 3c5e_A 365 VSKTMKIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGI 442 (570)
T ss_dssp CCTTSCCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEE
T ss_pred cCcccccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEE
Confidence 54444456789999999999999995 5899999999999999 99999999999999999994 89999999999
Q ss_pred eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM 437 (495)
Q Consensus 362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~ 437 (495)
+++ +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.++..
T Consensus 443 ~d~----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-- 509 (570)
T 3c5e_A 443 KDE----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL-- 509 (570)
T ss_dssp ECT----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT--
T ss_pred EcC----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc--
Confidence 998 8999999999999997 9999999999999999999999999998643 4678888765310
Q ss_pred HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
....+...++++++++++|+.|+ .+++|.++++.+.+.+||+
T Consensus 510 ---------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 551 (570)
T 3c5e_A 510 ---------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKI 551 (570)
T ss_dssp ---------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCB
T ss_pred ---------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCC
Confidence 00011235678888888888887 4588999999999999997
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1e-52 Score=441.91 Aligned_cols=322 Identities=22% Similarity=0.248 Sum_probs=271.1
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--- 131 (495)
...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD 257 (563)
T ss_dssp CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence 45689999999999999999999999999988888777788899999999999999999887777789999999874
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..+..
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------ 289 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------ 289 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence 46788999999999999999998754421
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR 288 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 288 (495)
..+..+|.+++||+++++++.+.+.. .+++++.||+||++..++..
T Consensus 290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW 335 (563)
T ss_dssp ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence 11234589999999999987544433 37899999999998765543
Q ss_pred CCC---CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC------CCccccCce
Q 011011 289 RPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI 359 (495)
Q Consensus 289 ~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~------~~~~~TGDl 359 (495)
... .....++|+|+++++++|+| ++++++|.|+.|||+|+||+++.|||++|+.|+++|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 222 13456899999999999999 45889999999999999999999999999999999843 469999999
Q ss_pred eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHH
Q 011011 360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEV 435 (495)
Q Consensus 360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~ 435 (495)
|++++ ||+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|++..
T Consensus 415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--- 480 (563)
T 1amu_A 415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--- 480 (563)
T ss_dssp EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC---
Confidence 99998 8999999999999998 999999999999999999999999998764 35778888652
Q ss_pred HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
..+.++++++++++|+.|+.| ++|.++++.+.+.+||+
T Consensus 481 ---------------~~~~~~l~~~l~~~L~~y~~P-----~~i~~v~~lP~t~~GKi 518 (563)
T 1amu_A 481 ---------------HIPLEQLRQFSSEELPTYMIP-----SYFIQLDKMPLTSNGKI 518 (563)
T ss_dssp ---------------CCCHHHHHHHHHHHSCGGGSC-----SEEEECSSCCBCTTSSB
T ss_pred ---------------CCCHHHHHHHHHhhCchhhCC-----cEEEEecccCCCCCcCh
Confidence 346788999999999999744 88999999999999987
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.7e-52 Score=447.75 Aligned_cols=345 Identities=19% Similarity=0.217 Sum_probs=279.2
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHH-HhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~ 131 (495)
..++++|+++|+|||||||.||||++||++++.... .+...+++.++|++++.+|++|+++..+ .+.++..|+++++.
T Consensus 257 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 257 TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred cccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 345789999999999999999999999999876553 4555688999999999999999999854 56789999988874
Q ss_pred -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011 132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK 204 (495)
Q Consensus 132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (495)
++..+++.|+++++|+++++|+++..|.+..... .
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------~-------------------------------- 378 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------I-------------------------------- 378 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS------S--------------------------------
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc------c--------------------------------
Confidence 4788999999999999999999987764421000 0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcC---CeeeeccCccc
Q 011011 205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG---VKVQVGYGLTE 280 (495)
Q Consensus 205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g---~~v~~~YG~TE 280 (495)
-...++.+|.+++||+++++++.+++ +.+| +++++.||+||
T Consensus 379 -----------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 423 (663)
T 1ry2_A 379 -----------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423 (663)
T ss_dssp -----------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred -----------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence 00134556999999999999985554 5677 89999999999
Q ss_pred CccceeccCC---CCCCccccccCcCCcEEEEEeCCCCCcCCC-CCccEEEEcc--CCcchhccCCchhhhhccCC--CC
Q 011011 281 SSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DG 352 (495)
Q Consensus 281 ~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~-g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~~--~~ 352 (495)
++..++...+ ....++++|.|+++++++|+|++++++++. |+.|||+++| |+++.|||+||+.|.+.|.. +|
T Consensus 424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g 503 (663)
T 1ry2_A 424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 503 (663)
T ss_dssp TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred ccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence 9876655433 235678999999999999999757889988 9999999999 58999999999999988753 78
Q ss_pred ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEE
Q 011011 353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAII 428 (495)
Q Consensus 353 ~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~v 428 (495)
||+|||+|++++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.|+|
T Consensus 504 ~y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~V 572 (663)
T 1ry2_A 504 YYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV 572 (663)
T ss_dssp SEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEE
T ss_pred EEEcCCEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEE
Confidence 999999999998 8999999999999998 899999999999999999999999999865 3588999
Q ss_pred ecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 429 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 429 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
+++++...... .........++++++++++|+.|+ .+++|.++++.+.+.+||+
T Consensus 573 v~~~~~~~~~~------~~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi 626 (663)
T 1ry2_A 573 VLKNKSSWSTA------TDDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI 626 (663)
T ss_dssp EEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred EEcCCCccccc------cchhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCc
Confidence 98764210000 000000124778888888888887 4488999999999999997
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.8e-52 Score=435.93 Aligned_cols=335 Identities=22% Similarity=0.241 Sum_probs=276.0
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
....++|+++|+|||||||.||||++||+++.+........+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 456789999999999999999999999999999888888888999999999999999999987778889999999874
Q ss_pred ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011 132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 207 (495)
Q Consensus 132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 207 (495)
++..+++.++++++|++.++|+++..++......
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------ 256 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS------------------------------------------ 256 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS------------------------------------------
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc------------------------------------------
Confidence 5778999999999999999999997764321000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccce
Q 011011 208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI 285 (495)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~ 285 (495)
...++.+|.+++||+++++++ +.+.+.+ ++++++.||+||++..+
T Consensus 257 ---------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 303 (512)
T 3fce_A 257 ---------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV 303 (512)
T ss_dssp ---------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred ---------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence 022345699999999999987 5566677 88999999999998766
Q ss_pred eccCCCC-----CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhcc---CCCCccccC
Q 011011 286 AARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTG 357 (495)
Q Consensus 286 ~~~~~~~-----~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~---~~~~~~~TG 357 (495)
+...... ....++|.|.++++++|+| ++++++|+|+.|||+|+||+++.|||++|+.|++.| +.++||+||
T Consensus 304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 5433221 2456799999999999999 568999999999999999999999999999999998 346799999
Q ss_pred ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChH
Q 011011 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE 433 (495)
Q Consensus 358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~ 433 (495)
|+|++ + +|+++|.||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.++ +.+.|+|+++.+
T Consensus 383 Dlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~ 450 (512)
T 3fce_A 383 DAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH 450 (512)
T ss_dssp EEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred ceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence 99998 5 7999999999999998 999999999999999999999999998754 346788887642
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
. ........++++++++++|+.|+ .+++|.++++.+.+.+||+
T Consensus 451 ~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi 493 (512)
T 3fce_A 451 S------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKV 493 (512)
T ss_dssp C------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSB
T ss_pred c------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcCh
Confidence 0 00000113567788888888886 4488999999999999997
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.3e-53 Score=445.32 Aligned_cols=329 Identities=22% Similarity=0.265 Sum_probs=201.8
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
....++|+++|+|||||||.||||++||+++.+.... ...+++.++|++++++|++|..+....+.++..|+++++.
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 3467899999999999999999999999998765544 4456788999999999999877766667788899988874
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..+++...
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------------------------------- 322 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--------------------------------------------- 322 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---------------------------------------------
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---------------------------------------------
Confidence 57899999999999999999999988764310
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA 286 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~ 286 (495)
..++.+|.+++||++++... +++.+.+ ++++++.||+||++.+.+
T Consensus 323 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 369 (570)
T 4gr5_A 323 ---------------------------------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT 369 (570)
T ss_dssp ---------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred ---------------------------------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence 22345699999999999765 6666666 789999999999987665
Q ss_pred ccCCC----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC--------Ccc
Q 011011 287 ARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWL 354 (495)
Q Consensus 287 ~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~--------~~~ 354 (495)
..... .....++|+|+++++++|+| +.++++++|+.|||+|+||+++.|||++|+.|+++|..+ |||
T Consensus 370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~ 448 (570)
T 4gr5_A 370 HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMY 448 (570)
T ss_dssp EEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEE
T ss_pred eeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEE
Confidence 43221 23345799999999999999 458999999999999999999999999999999998543 799
Q ss_pred ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP 430 (495)
Q Consensus 355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~ 430 (495)
+|||+|++++ +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++
T Consensus 449 ~TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~ 517 (570)
T 4gr5_A 449 RTGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA 517 (570)
T ss_dssp EEEEEEEECT----------TSCEEEEEC---------------------------------------------------
T ss_pred eCCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEe
Confidence 9999999998 8999999999999998 9999999999999999999999999998653 56678876
Q ss_pred ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
... ....+.++++++++++|+.|+.| ++|.++++.+.+.+||+
T Consensus 518 ~~~---------------~~~~~~~~l~~~l~~~l~~~~~P-----~~i~~v~~lP~t~~GKi 560 (570)
T 4gr5_A 518 ERA---------------DAPPDAAELRRHVAEALPAYMVP-----VECVPVDELPRTPNGKL 560 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCC---------------CCCcCHHHHHHHHHhhCccccCC-----cEEEEcccCCCCCCcCc
Confidence 542 12346788999999999999844 78899999999999986
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7e-52 Score=440.63 Aligned_cols=332 Identities=21% Similarity=0.336 Sum_probs=282.7
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~ 131 (495)
....++|++||+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 179 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3457899999999999999999999999999998888888889999999999999999999875 56678899999884
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..++.......
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------ 296 (617)
T 3rg2_A 259 ADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------------------------------ 296 (617)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC------------------------------------------
T ss_pred CCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc------------------------------------------
Confidence 57889999999999999999999988876432210
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
....+..+|.+++||+++++++ +.+.+.++++++|.||+||++..++.
T Consensus 297 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 345 (617)
T 3rg2_A 297 -------------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTR 345 (617)
T ss_dssp -------------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECC
T ss_pred -------------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeeccc
Confidence 0013345699999999999987 55556789999999999998755443
Q ss_pred cCCCC-CCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011 288 RRPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365 (495)
Q Consensus 288 ~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~ 365 (495)
..... ....++|.|+ ++.+++|+| +.++++|.|+.|||+|+||++++||+++|+.|++.|..++||+|||+|++++
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~- 423 (617)
T 3rg2_A 346 LDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP- 423 (617)
T ss_dssp TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred CCCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC-
Confidence 22111 2235789997 788999999 5689999999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHH
Q 011011 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR 441 (495)
Q Consensus 366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~ 441 (495)
||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++ +.+.+++++..
T Consensus 424 ---------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--------- 484 (617)
T 3rg2_A 424 ---------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--------- 484 (617)
T ss_dssp ---------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred ---------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC---------
Confidence 8999999999999997 999999999999999999999999998754 35668888752
Q ss_pred cCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 442 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 442 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
..+..++++++++ .|+.|+.| +.|.++++.+.+.|||+
T Consensus 485 ---------~~~~~~l~~~l~~~~lp~~~vP-----~~~~~v~~lP~t~~GKi 523 (617)
T 3rg2_A 485 ---------PLRAVQVRRFLREQGIAEFKLP-----DRVECVDSLPLTAVGKV 523 (617)
T ss_dssp ---------CCCHHHHHHHHHTTTCCGGGSC-----SEEEECSCCCBCTTSSB
T ss_pred ---------CCCHHHHHHHHHhCCCccccCC-----cEEEEecccCCCCCCCC
Confidence 3456788999988 68888744 88999999999999997
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.6e-52 Score=433.91 Aligned_cols=362 Identities=20% Similarity=0.214 Sum_probs=280.2
Q ss_pred CCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc--cCC
Q 011011 20 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPA 97 (495)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~--~~~ 97 (495)
..+..+.++++....... .+. .+.....++|+++|+|||||||.||||++||+++.+........ ++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 185 (521)
T 3l8c_A 116 EGISLVSLSEIESAKLAE-MPY---------ERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDV 185 (521)
T ss_dssp TTSEEEEHHHHHHHHHHT-CCC---------CCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCC
T ss_pred ccCcccchhhhhhccccc-CCc---------ccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCC
Confidence 345677777765433221 111 12345678999999999999999999999999998877665544 677
Q ss_pred CCCcEEEEECChhhHHHHHHhHhHhhcCceEEec------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcch
Q 011011 98 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSA 171 (495)
Q Consensus 98 ~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 171 (495)
.+++++++..|++|.++....+.++..|+++++. ++..+++.+.++++|++.++|+++..+......
T Consensus 186 ~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------- 258 (521)
T 3l8c_A 186 PKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF------- 258 (521)
T ss_dssp CSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC-------
T ss_pred CCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc-------
Confidence 8899999999999999887777788999998874 577899999999999999999998766432100
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEE
Q 011011 172 ARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV 251 (495)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (495)
....++.+|.++
T Consensus 259 --------------------------------------------------------------------~~~~~~~lr~~~ 270 (521)
T 3l8c_A 259 --------------------------------------------------------------------CQAKMPALTHFY 270 (521)
T ss_dssp --------------------------------------------------------------------STTTCTTCCEEE
T ss_pred --------------------------------------------------------------------ccccCccceEEE
Confidence 002234568999
Q ss_pred eccCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCCC-----CCCccccccCcCCcEEEEEeCCCCCcCCCCCcc
Q 011011 252 SGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKG 324 (495)
Q Consensus 252 ~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G 324 (495)
+||++++++. +.+.+.+ ++++++.||+||++..++..... ....+++|+|+++++++|+|+ +++++++|+.|
T Consensus 271 ~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~g~~G 349 (521)
T 3l8c_A 271 FDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGEQG 349 (521)
T ss_dssp ECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECT-TSCBCCTTCCE
T ss_pred EecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECC-CcCCCCCCCce
Confidence 9999999887 5666777 89999999999998766543221 124467999999999999994 58999999999
Q ss_pred EEEEccCCcchhccCCchhhhhcc---CCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHH
Q 011011 325 IVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 401 (495)
Q Consensus 325 El~v~~p~~~~gY~~~~~~t~~~~---~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~I 401 (495)
||+|+||+++.|||++|+.|++.| +.++||+|||+|++++ +|+++|.||+||+|++ +|++|+|.+|
T Consensus 350 El~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eI 418 (521)
T 3l8c_A 350 EIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDV 418 (521)
T ss_dssp EEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHH
T ss_pred EEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHH
Confidence 999999999999999999999998 5578999999999998 8999999999999998 8999999999
Q ss_pred HHHHhcCcccceEEEEecCC-----CeeEEEEecChHHHHHHHHHcCCCcCCc-cccChHHHHHHHHHHHHhHhccCCCc
Q 011011 402 EEAALRSSLIRQIVVIGQDQ-----RRPGAIIVPDKEEVLMAAKRLSIVHADA-SELSKEKTISLLYGELRKWTSKCSFQ 475 (495)
Q Consensus 402 E~~l~~~p~V~~~~vvg~~~-----~~~~a~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~ 475 (495)
|++|.+||.|.+|+|++..+ +.+.|+|+++++.. .... .....++++++++++|+.|+.
T Consensus 419 E~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~----------~~~~~~~~~~~~l~~~l~~~l~~~~~----- 483 (521)
T 3l8c_A 419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVK----------ERFDRELELTKAIKASVKDHMMSYMM----- 483 (521)
T ss_dssp HHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSG----------GGCSSHHHHHHHHHHHSGGGSCGGGS-----
T ss_pred HHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccc----------cccccchhhHHHHHHHHHhhCccccC-----
Confidence 99999999999999998753 35778998875410 0000 001246778888888888874
Q ss_pred cccEEEecCCCCCCCCee
Q 011011 476 IGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 476 ~~~~~~~~~~~~~~~~~l 493 (495)
+++|.++++.+.+.+||+
T Consensus 484 P~~i~~v~~lP~t~~GKi 501 (521)
T 3l8c_A 484 PSKFLYRDSLPLTPNGKI 501 (521)
T ss_dssp CSEEEECSSCCBCTTSSB
T ss_pred CeEEEEecccCCCCCcCc
Confidence 488999999999999997
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5e-52 Score=440.57 Aligned_cols=322 Identities=18% Similarity=0.178 Sum_probs=266.5
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--- 131 (495)
...++|++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|.++....+.++..|+++++.
T Consensus 160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 456899999999999999999999999999776554 4557789999999999999999988888889999998873
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL 209 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 209 (495)
++..+++.++++++|++..+|+++..+....
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~----------------------------------------------- 271 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD----------------------------------------------- 271 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence 5888999999999999999999998775420
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceec
Q 011011 210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~ 287 (495)
...++.+|.+++||++++... +++.+.+ +++++|.||+||++..++.
T Consensus 272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 320 (620)
T 4dg8_A 272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC 320 (620)
T ss_dssp -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence 022345699999999999664 6666665 8899999999999876654
Q ss_pred cCCC----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC-------Ccccc
Q 011011 288 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT 356 (495)
Q Consensus 288 ~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~-------~~~~T 356 (495)
.... .....++|+|+++++++|+|+++..++|.|+.|||+|+||++++||+++|+.|++.|..+ +||+|
T Consensus 321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT 400 (620)
T 4dg8_A 321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT 400 (620)
T ss_dssp EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence 3221 134568999999999999997755568999999999999999999999999999999653 79999
Q ss_pred CceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe---eEEEEecChH
Q 011011 357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR---PGAIIVPDKE 433 (495)
Q Consensus 357 GDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~---~~a~vv~~~~ 433 (495)
||+|++++ ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++. +.++++...
T Consensus 401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~- 468 (620)
T 4dg8_A 401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA- 468 (620)
T ss_dssp EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-
T ss_pred CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-
Confidence 99999998 8999999999999998 99999999999999999999999999876543 333433321
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
+++++.++++|+.|+.| +.|.++++.+.+.|||+
T Consensus 469 ---------------------~~~~~~l~~~Lp~y~~P-----~~~~~v~~lP~t~~GKi 502 (620)
T 4dg8_A 469 ---------------------DASPQALLRQLPTWQRP-----HACVRVEALPLTAHGKL 502 (620)
T ss_dssp ---------------------TCCCHHHHHHSCGGGSC-----SEEEECSSCCCC----C
T ss_pred ---------------------HHHHHHHHHhChhhcCC-----cEEEEECcCCCCcccCH
Confidence 22345677889999854 88999999999999996
No 23
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-52 Score=436.85 Aligned_cols=326 Identities=24% Similarity=0.340 Sum_probs=202.0
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEe--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY-- 130 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~-- 130 (495)
....++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.. +..|..++.
T Consensus 155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~ 234 (509)
T 3ivr_A 155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK 234 (509)
T ss_dssp CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence 45678999999999999999999999999999988888888899999999999999999999877665 455555554
Q ss_pred cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011 131 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 210 (495)
Q Consensus 131 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (495)
.++..+++.++++++|++.++|+++..++....
T Consensus 235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------------------------------------------- 267 (509)
T 3ivr_A 235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----------------------------------------------- 267 (509)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------
T ss_pred cCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------
Confidence 378999999999999999999999988866420
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHc-CCeeeeccCcccCccceeccC
Q 011011 211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARR 289 (495)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~ 289 (495)
...+..+|.+..+|++ ...+.+.+.+ ++++++.||+||++.+++...
T Consensus 268 ------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 315 (509)
T 3ivr_A 268 ------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAP 315 (509)
T ss_dssp ------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred ------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence 0223445888888887 4456677777 899999999999987766543
Q ss_pred CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011 290 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 369 (495)
Q Consensus 290 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~ 369 (495)
.. ....++|+|+++++++|+|++ ++++|+|+.|||+|+||+++.||+++|+.|++.|. +|||+|||+|++++
T Consensus 316 ~~-~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~----- 387 (509)
T 3ivr_A 316 YR-DRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA----- 387 (509)
T ss_dssp GG-GSTTSCCEECTTCEEEEECTT-SCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-----
T ss_pred cc-cCCCcccccCCCcEEEEECCC-CCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-----
Confidence 32 223459999999999999965 89999999999999999999999999999999995 89999999999998
Q ss_pred CccccCCeEEEEccc--cceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe----eEEEEecChHHHHHHHHHcC
Q 011011 370 RSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 443 (495)
Q Consensus 370 ~~~~~~G~l~i~GR~--~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~----~~a~vv~~~~~~~~~~~~~~ 443 (495)
+|+++|+||+ ||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++. +.++|++.++
T Consensus 388 -----dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~---------- 451 (509)
T 3ivr_A 388 -----DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG---------- 451 (509)
T ss_dssp -----TSCEEEEEEC-----------------------------------------------------------------
T ss_pred -----CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------
Confidence 8999999999 999997 99999999999999999999999999987654 5677776643
Q ss_pred CCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 444 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+.| ++|.++++.+.+.|||+
T Consensus 452 ------~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 490 (509)
T 3ivr_A 452 ------ESIAADALAEFVASLIARYKKP-----KHVVFVEALPKDAKGAI 490 (509)
T ss_dssp --------------------------------------------------
T ss_pred ------CCCCHHHHHHHHHhhCcccCCC-----cEEEEecCCCCCCCCCc
Confidence 3456788999999999999744 78999999999999986
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.4e-52 Score=434.78 Aligned_cols=333 Identities=25% Similarity=0.374 Sum_probs=268.2
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHH-HHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
..+++|+++|+|||||||.||||++||+++ ..........+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~ 258 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA 258 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence 457899999999999999999999999999 555555556678899999999999999999876 45678899998864
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY 208 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (495)
++..+++.++++++|++.++|+++..++..... .
T Consensus 259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~-------------------------------------- 295 (529)
T 2v7b_A 259 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P-------------------------------------- 295 (529)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C--------------------------------------
T ss_pred CCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c--------------------------------------
Confidence 688999999999999999999998777542100 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011 209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA 287 (495)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~ 287 (495)
. .....+|.+++||+++++++ +.+.+.+|+++++.||+||++.+...
T Consensus 296 ------------------------------~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 343 (529)
T 2v7b_A 296 ------------------------------A--RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLS 343 (529)
T ss_dssp ------------------------------C--GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEE
T ss_pred ------------------------------c--ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeec
Confidence 0 00113589999999999987 45555689999999999999766655
Q ss_pred cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011 288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 367 (495)
Q Consensus 288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~ 367 (495)
........+++|+|+++++++|+| ++++++|+|+.|||+|+||+++.||+++++.|++.|. ++||+|||+|++++
T Consensus 344 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~--- 418 (529)
T 2v7b_A 344 NRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP--- 418 (529)
T ss_dssp CCTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT---
T ss_pred cccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC---
Confidence 544445678899999999999999 5589999999999999999999999999999999995 89999999999998
Q ss_pred CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC---CCeeEEEEecChHHHHHHHHHcCC
Q 011011 368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|.||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+ ...+.|+|++..+.
T Consensus 419 -------~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~---------- 480 (529)
T 2v7b_A 419 -------NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF---------- 480 (529)
T ss_dssp -------TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------
T ss_pred -------CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------
Confidence 8999999999999998 89999999999999999999999999973 23567888876430
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+...++++++++++|+.|+ .+++|.++++.+.+.+||+
T Consensus 481 ---~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi 521 (529)
T 2v7b_A 481 ---APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKI 521 (529)
T ss_dssp ---CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCB
T ss_pred ---CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccch
Confidence 0011123567788887777776 5589999999999999997
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.2e-52 Score=429.90 Aligned_cols=320 Identities=24% Similarity=0.318 Sum_probs=270.7
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
...+++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~ 237 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence 356789999999999999999999999999999888888888999999999999999999998878889999999885
Q ss_pred -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011 132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV 210 (495)
Q Consensus 132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 210 (495)
++..+++.++++++|++.++|+++..|+.....
T Consensus 238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------- 271 (501)
T 3ipl_A 238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------------------- 271 (501)
T ss_dssp CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence 689999999999999999999999887653100
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011 211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP 290 (495)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~ 290 (495)
....+|.+++||+++++++.+.+..+++++++.||+||++..+.....
T Consensus 272 --------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 319 (501)
T 3ipl_A 272 --------------------------------EPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP 319 (501)
T ss_dssp --------------------------------SCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred --------------------------------CcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence 000348999999999999866666689999999999999875544332
Q ss_pred C--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011 291 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368 (495)
Q Consensus 291 ~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~ 368 (495)
. ....+++|.|+++++++|+|++ +|+.|||+|+|+.+++||+++++.|+. | .+|||+|||+|++++
T Consensus 320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~---- 387 (501)
T 3ipl_A 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH---- 387 (501)
T ss_dssp HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence 2 2356789999999999999965 466899999999999999999999987 5 589999999999998
Q ss_pred CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI 444 (495)
Q Consensus 369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~ 444 (495)
+|+++|.||+||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ .+.+++++.
T Consensus 388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~------------- 447 (501)
T 3ipl_A 388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE------------- 447 (501)
T ss_dssp ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence 8999999999999996 9999999999999999999999999998654 355777754
Q ss_pred CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+.| ++|.++++.+.+.|||+
T Consensus 448 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi 486 (501)
T 3ipl_A 448 -----SDISKAQLIAYLSKHLAKYKVP-----KHFEKVDTLPYTSTGKL 486 (501)
T ss_dssp -----SCCCHHHHHHHHHHHSCGGGSC-----SEEEECSSCC-------
T ss_pred -----CCCCHHHHHHHHHhhCccccCC-----CEEEEecccCCCCCCCE
Confidence 3456789999999999999854 78999999999999996
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.2e-52 Score=464.49 Aligned_cols=334 Identities=29% Similarity=0.459 Sum_probs=212.7
Q ss_pred cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc----ccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCce
Q 011011 53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIE 127 (495)
Q Consensus 53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~ 127 (495)
.....++|+++|+|||||||.||||++||+++...+..... .+++.++|++++++|++|.+++.. .+.++..|++
T Consensus 219 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~ 298 (979)
T 3tsy_A 219 SVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAA 298 (979)
T ss_dssp CSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCE
T ss_pred cCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcE
Confidence 34568999999999999999999999999999887665433 456788999999999999999866 4566889999
Q ss_pred EEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011 128 LMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK 204 (495)
Q Consensus 128 ~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (495)
+++. ++..+++.++++++|++.++|+++..++......
T Consensus 299 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------------- 339 (979)
T 3tsy_A 299 ILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE--------------------------------------- 339 (979)
T ss_dssp EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG---------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc---------------------------------------
Confidence 8885 5889999999999999999999998776531100
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCc
Q 011011 205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESS 282 (495)
Q Consensus 205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~ 282 (495)
...++.+|.+++||+++++++. .+.+.+ ++++++.||+||++
T Consensus 340 ------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~ 383 (979)
T 3tsy_A 340 ------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383 (979)
T ss_dssp ------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGC
T ss_pred ------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhh
Confidence 0123456999999999999874 455567 89999999999998
Q ss_pred cceeccC-----CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccC
Q 011011 283 PVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357 (495)
Q Consensus 283 ~~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TG 357 (495)
.+++... +.....+++|+|+++++++|+|+++++++|+|+.|||+|+||++++|||++|+.|++.|+.+|||+||
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TG 463 (979)
T 3tsy_A 384 PVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG 463 (979)
T ss_dssp SEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred HHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcC
Confidence 7665431 22345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChH
Q 011011 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE 433 (495)
Q Consensus 358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~ 433 (495)
|+|++++ +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++ .+.|+|++.++
T Consensus 464 Dl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~ 532 (979)
T 3tsy_A 464 DIGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD 532 (979)
T ss_dssp EEEEECT----------TSCEEEEEESCC---------------------------------------------------
T ss_pred CEEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence 9999998 8999999999999998 8999999999999999999999999997654 46678877543
Q ss_pred HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
...+.++++++++++|+.|+. +++|.++++.+.+.|||+
T Consensus 533 ----------------~~~~~~~l~~~l~~~l~~~~~-----p~~i~~v~~lP~t~~GKi 571 (979)
T 3tsy_A 533 ----------------SELSEDDVKQFVSKQVVFYKR-----INKVFFTESIPKAPSGKI 571 (979)
T ss_dssp ------------------------------------------------------------
T ss_pred ----------------CCCCHHHHHHHHHHhcccccC-----CeEEEEeCCcCcCCCCCe
Confidence 345678899999999999974 478999999999999986
No 27
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.9e-49 Score=450.54 Aligned_cols=326 Identities=22% Similarity=0.269 Sum_probs=278.7
Q ss_pred CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
....++|++||+|||||||.||||+++|+++.+. ......+++.++|+++++.|+.|..+....+.++..|+++++.
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 3467899999999999999999999999999865 4455667888999999999999988877778889999999885
Q ss_pred ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011 132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS 207 (495)
Q Consensus 132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 207 (495)
++..+.+.++++++|++..+|+++..+.....
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-------------------------------------------- 716 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE-------------------------------------------- 716 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS--------------------------------------------
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch--------------------------------------------
Confidence 46789999999999999999999987754200
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccce
Q 011011 208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI 285 (495)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~ 285 (495)
..+..+|.+++||++++... +++.+.+ +.+++|.||+||++..+
T Consensus 717 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 762 (1304)
T 2vsq_A 717 ----------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762 (1304)
T ss_dssp ----------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred ----------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence 01123489999999999775 6666666 47899999999998766
Q ss_pred eccCC----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC------CCccc
Q 011011 286 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLN 355 (495)
Q Consensus 286 ~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~------~~~~~ 355 (495)
+.... ......++|+|+++++++|+|+ .++++|.|+.|||+|+|+++++||+|+|++|+++|.. ++||+
T Consensus 763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr 841 (1304)
T 2vsq_A 763 TAHVVHDLPDSISSLPIGKPISNASVYILNE-QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR 841 (1304)
T ss_dssp EEEECCCCCSSCSSCCCBEECTTEEEEEECT-TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred eeeeccCccccCCCCCCceeeCCCEEEEECC-CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEe
Confidence 54332 1234467999999999999995 5899999999999999999999999999999999842 45999
Q ss_pred cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecC
Q 011011 356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD 431 (495)
Q Consensus 356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~ 431 (495)
|||+|++++ ||.++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++ ..+.|+|++.
T Consensus 842 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~ 910 (1304)
T 2vsq_A 842 TGDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR 910 (1304)
T ss_dssp EEEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred cCCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence 999999999 8999999999999998 999999999999999999999999998653 4688999875
Q ss_pred hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
. ..+.+++++++++.|+.|+.| +.|.++++.+.+.|||+
T Consensus 911 ~------------------~~~~~~l~~~l~~~Lp~ymvP-----~~~~~l~~lP~t~~GKi 949 (1304)
T 2vsq_A 911 T------------------QLSAEDVKAHLKKQLPAYMVP-----QTFTFLDELPLTTNGKV 949 (1304)
T ss_dssp S------------------SSCHHHHHHHHHHHSCGGGSC-----SEEEEESCCCCCSSCSS
T ss_pred C------------------CCCHHHHHHHHHHhChHhhhc-----cEEEEecccCCCCCccc
Confidence 2 346788999999999999855 78999999999999997
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.9e-50 Score=423.38 Aligned_cols=337 Identities=21% Similarity=0.316 Sum_probs=272.9
Q ss_pred cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011 53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT 131 (495)
Q Consensus 53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~ 131 (495)
....+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus 161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 34567899999999999999999999999999999888888889999999999999999999887 56678999998874
Q ss_pred -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011 132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK 204 (495)
Q Consensus 132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (495)
++..+++.++++++|++.++|+++..+.+.+.....
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------------------- 283 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK------------------------------------- 283 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------------------------------
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------------------------------
Confidence 477889999999999999999998877654211100
Q ss_pred CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc------CCeeeeccC
Q 011011 205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYG 277 (495)
Q Consensus 205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~------g~~v~~~YG 277 (495)
-...++.+|.+++||+++++++ +.+.+.+ +.++++.||
T Consensus 284 -----------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG 328 (590)
T 3kxw_A 284 -----------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYG 328 (590)
T ss_dssp -----------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEE
T ss_pred -----------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccc
Confidence 0023455699999999999987 5555565 247999999
Q ss_pred cccCccceeccCC---------------------------CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011 278 LTESSPVIAARRP---------------------------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330 (495)
Q Consensus 278 ~TE~~~~~~~~~~---------------------------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~ 330 (495)
+||++.+++.... .....+++|.|+++ ++|+|+++++++++|+.|||+|+|
T Consensus 329 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g 406 (590)
T 3kxw_A 329 LAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS 406 (590)
T ss_dssp CGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEES
T ss_pred cccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC
Confidence 9999887664322 11234678999988 889998889999999999999999
Q ss_pred CCcchhccCCchhhhhccCC------CC--ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHH
Q 011011 331 SQVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 402 (495)
Q Consensus 331 p~~~~gY~~~~~~t~~~~~~------~~--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE 402 (495)
|+++.|||++|+.|+++|.. +| ||+|||+|++++ |+++|+||+||+||+ +|++|+|.|||
T Consensus 407 ~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----------G~l~~~GR~dd~Ik~-~G~~v~p~eIE 474 (590)
T 3kxw_A 407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----------NELYVTGRIKDLIII-YGKNHYPQDIE 474 (590)
T ss_dssp TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----------TEEEEEEESSCHHHH-HHHTTHHHHHH
T ss_pred CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----------CEEEEEcCccceEEE-CCEecCHHHHH
Confidence 99999999999999999964 24 999999999884 999999999999998 99999999999
Q ss_pred HHH-hcCcccc--eEEEEecCC---CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHh-HhccCCCc
Q 011011 403 EAA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQ 475 (495)
Q Consensus 403 ~~l-~~~p~V~--~~~vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~ 475 (495)
++| ..||.|. +|+|++.++ ..+.+++++..+. ....+.+++.+++++.|.+ ++.+.
T Consensus 475 ~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~~~p~--- 537 (590)
T 3kxw_A 475 FSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENHQLEV--- 537 (590)
T ss_dssp HHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHhcCccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHcCCce---
Confidence 999 7899998 799888653 3466777765420 0234567899999999986 54331
Q ss_pred cccEEEe--cCCCCCCCCee
Q 011011 476 IGPIHVV--DEPFTVNFLCL 493 (495)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~l 493 (495)
..+.++ ++.+.+.+||+
T Consensus 538 -~~i~~v~~~~lP~t~sGKi 556 (590)
T 3kxw_A 538 -HTIVLIPLKAMPHTTSGKI 556 (590)
T ss_dssp -CEEEEEETTCSCCCSCHHH
T ss_pred -eEEEEECCCccCcCCCcHH
Confidence 245555 68888999986
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=9.7e-49 Score=413.90 Aligned_cols=332 Identities=20% Similarity=0.310 Sum_probs=267.0
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc-cCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT- 131 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~- 131 (495)
...++|+++|+|||||||.||||++||+++.+.+..+... +++.++|++++++|++|.+++.. .+.++..|.++++.
T Consensus 172 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 172 RPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 4568999999999999999999999999998877766543 78899999999999999999876 45568888888764
Q ss_pred ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011 132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ 205 (495)
Q Consensus 132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (495)
++..+++.++++++|++.++|+++..+.........
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------------------------- 293 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDL-------------------------------------- 293 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHH--------------------------------------
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccccc--------------------------------------
Confidence 577899999999999999999998766543211100
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc------CCeeeeccCc
Q 011011 206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYGL 278 (495)
Q Consensus 206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~------g~~v~~~YG~ 278 (495)
-...++.+|.+++||+++++++ +.+.+.+ +..+++.||+
T Consensus 294 ----------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 339 (576)
T 3gqw_A 294 ----------------------------------AELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGL 339 (576)
T ss_dssp ----------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEEC
T ss_pred ----------------------------------ccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCc
Confidence 0123455699999999999987 5555566 6789999999
Q ss_pred ccCccceeccCCCCC----------------------------CccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011 279 TESSPVIAARRPTCN----------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330 (495)
Q Consensus 279 TE~~~~~~~~~~~~~----------------------------~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~ 330 (495)
||++..++....... ...++|+|+++++++|+| ++++++|+|+.|||+|+|
T Consensus 340 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g 418 (576)
T 3gqw_A 340 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISG 418 (576)
T ss_dssp GGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEES
T ss_pred ccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeC
Confidence 999887765432110 113789999999999999 679999999999999999
Q ss_pred CCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcc
Q 011011 331 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 410 (495)
Q Consensus 331 p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~ 410 (495)
|++++||+++|+.+++.+ .+|||+|||+|++ + ||+++|+||+||+||+ +|++|+|.|||++|.+||.
T Consensus 419 ~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~-~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 419 PSLMSGYFGDQVSQDEIA-ATGWLDTGDLGYL-L----------DGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTSCCCBTTCHHHHHHHH-HHSCEEEEEEEEE-E----------TTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred ccccccccCCcccccccc-CCCeeeccceEEE-E----------CCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 999999999999888765 6899999999998 5 7999999999999998 9999999999999999999
Q ss_pred cceEEEEec--CCCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHH-HhHhccCCCccccEEEec--CC
Q 011011 411 IRQIVVIGQ--DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGEL-RKWTSKCSFQIGPIHVVD--EP 485 (495)
Q Consensus 411 V~~~~vvg~--~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~--~~ 485 (495)
|.+++|++. ++....++++.... .....+++.+.++++| +.++.+ ..+.+++ +.
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~p-----~~i~~v~~~~l 544 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRIS----------------DEERRGQLIHALAARIQSEFGVT-----AAIDLLPPHSI 544 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHSCC-----EEEEEECSSCS
T ss_pred cccccEEEEEcCCccEEEEEEEecC----------------chhHHHHHHHHHHHHHHHHhCCc-----eeEEEECCCCc
Confidence 998777665 34445555544321 2224567888898888 567644 6777777 78
Q ss_pred CCCCCCee
Q 011011 486 FTVNFLCL 493 (495)
Q Consensus 486 ~~~~~~~l 493 (495)
+.+.+||+
T Consensus 545 P~t~~GKi 552 (576)
T 3gqw_A 545 PRTSSGKP 552 (576)
T ss_dssp CBCTTSSB
T ss_pred CcCCCccc
Confidence 88999986
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.9e-49 Score=415.47 Aligned_cols=339 Identities=17% Similarity=0.151 Sum_probs=196.7
Q ss_pred CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc--------ccCCCCCcEEEEECChhhHHHHHHhHhHhhcCc
Q 011011 55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--------IVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 126 (495)
Q Consensus 55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~ 126 (495)
...++++++|+|||||||.||||++||+++.+....+.. .+.+...+++++..|+.|.++....+.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 456789999999999999999999999999876655432 244678899999999999888777777888999
Q ss_pred eEEecc----hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccC
Q 011011 127 ELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN 202 (495)
Q Consensus 127 ~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (495)
++++.. +..+.+.++++++|++.++|+++..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------------------------------- 289 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------------------------------- 289 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------------------------------
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------------------------------
Confidence 988753 46788999999999999999976543110
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHH-HcCCeeeeccCcccC
Q 011011 203 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTES 281 (495)
Q Consensus 203 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~-~~g~~v~~~YG~TE~ 281 (495)
...++.+|.+++||+++++++.+.++ .+++++++.||+||+
T Consensus 290 --------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 331 (562)
T 3ite_A 290 --------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV 331 (562)
T ss_dssp --------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGG
T ss_pred --------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchh
Confidence 02234569999999999999855554 468999999999998
Q ss_pred ccceeccC-CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCC--ccccCc
Q 011011 282 SPVIAARR-PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGD 358 (495)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~--~~~TGD 358 (495)
+..++... ......+++|+|+++++++|+|+++++++|+|+.|||+|+||+++.|||++|+.|+..+. +| ||+|||
T Consensus 332 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD 410 (562)
T 3ite_A 332 TIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD 410 (562)
T ss_dssp CSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred eeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence 87655433 233456789999999999999998899999999999999999999999999999987763 44 999999
Q ss_pred eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcC-cccceEEEEecCCCe-----eEEEEecCh
Q 011011 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRR-----PGAIIVPDK 432 (495)
Q Consensus 359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~-p~V~~~~vvg~~~~~-----~~a~vv~~~ 432 (495)
+|++++ +|+++|+||+||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++. +.++++...
T Consensus 411 lg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~ 479 (562)
T 3ite_A 411 IVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479 (562)
T ss_dssp EEEECT----------TSCEEEEEEC------------------------------------------------------
T ss_pred EEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence 999998 8999999999999998 99999999999999997 888899988876543 223333222
Q ss_pred HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCC-CCCee
Q 011011 433 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCL 493 (495)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 493 (495)
........ ..........++|+++++++|+.|+.| ++|.++++.+.. .+||+
T Consensus 480 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~L~~y~~P-----~~i~~v~~lP~t~~~GKi 532 (562)
T 3ite_A 480 AAVRGELR----WINENYKEINNSLRQACEQTLPAYMVP-----DFIIPISFIPLRDTSAKT 532 (562)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccc----ccccchhhHHHHHHHHHHhhCCcccCC-----cEEEEeccCCCCCCCCcc
Confidence 21110000 000111223568999999999999854 789999999965 88886
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.3e-48 Score=384.30 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=248.1
Q ss_pred CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-chHhH
Q 011011 58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNL 136 (495)
Q Consensus 58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-~~~~~ 136 (495)
.||++||+|||||||.||||++||+++.+.+..+...++++++|++++++|++|++++...+.++..|+++++. +....
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~ 115 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP 115 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence 47899999999999999999999999999888888889999999999999999999998888888888888775 33455
Q ss_pred HHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q 011011 137 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL 216 (495)
Q Consensus 137 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 216 (495)
++.++++++|++.++|+++..+++....
T Consensus 116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------------- 143 (358)
T 4gs5_A 116 LAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------------- 143 (358)
T ss_dssp TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence 6788999999999999999887653110
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCCCCcc
Q 011011 217 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG 296 (495)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 296 (495)
...+..+|.+++||+++++++.+.++.+++++++.||+||++..++.........+
T Consensus 144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g 199 (358)
T 4gs5_A 144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS 199 (358)
T ss_dssp ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence 01233458999999999999877777789999999999999988877766666778
Q ss_pred ccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCC
Q 011011 297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 376 (495)
Q Consensus 297 ~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G 376 (495)
.+|.+.|++.+.+.+ .|||+++|+.. .+|||+|||+|++++ +|
T Consensus 200 ~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g 242 (358)
T 4gs5_A 200 ELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA 242 (358)
T ss_dssp SCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred eeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence 899999998887633 58999986532 478999999999998 67
Q ss_pred eEEEEccccceEEeCCceeecchHHHHHH---hcCcccceEEEE-ecCCC----eeEEEEecChHHHHHHHHHcCCCcCC
Q 011011 377 VLVLEGRAKDTIVLSTGENVEPLELEEAA---LRSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD 448 (495)
Q Consensus 377 ~l~i~GR~~d~i~~~~G~~v~~~~IE~~l---~~~p~V~~~~vv-g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~ 448 (495)
+.++||+||+||+ +|++|+|.|||++| .+||.|.+|+|+ +.+++ .+.|+|+....
T Consensus 243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--------------- 305 (358)
T 4gs5_A 243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--------------- 305 (358)
T ss_dssp -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---------------
T ss_pred -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---------------
Confidence 6678999999997 89999999999877 468999999887 44443 45677665532
Q ss_pred ccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011 449 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL 493 (495)
Q Consensus 449 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 493 (495)
+...++++++++++|+.|+. +++|.++++.+.+.+||+
T Consensus 306 --~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi 343 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYEN-----PKHIYFAKAFAKTQTDKI 343 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGGS-----CSCEEEESSCCBCTTSCB
T ss_pred --CcCHHHHHHHHHhhCCCCCC-----ceEEEEECCcCCCCCCCh
Confidence 23457899999999999974 488999999999999997
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.3e-47 Score=386.76 Aligned_cols=346 Identities=16% Similarity=0.125 Sum_probs=259.5
Q ss_pred hcccCCcchhhcccc--cCCCCC-CCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh---hcccCCCCCcEEEEECChhh
Q 011011 38 RKAFSDSNDARKHYK--YETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWH 111 (495)
Q Consensus 38 ~~~~~~~~~~~~~~~--~~~~~~-~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~h 111 (495)
..|+.++.+.+++++ ...+++ +|+++++|||||||.||+|++||+++.+....+ ...+++.++|++++++|+.|
T Consensus 62 ~lP~~~~~~l~~~~p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (436)
T 3qov_A 62 KIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGM 141 (436)
T ss_dssp GSCCBCHHHHHHTTTTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTT
T ss_pred HCCCCCHHHHHhcCCCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccccc
Confidence 344444444443322 234566 899999999999999999999999997765554 33457899999999999865
Q ss_pred HHHHH-HhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHH
Q 011011 112 VYERA-CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY 187 (495)
Q Consensus 112 ~~~~~-~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (495)
..+.. ..+.++..|+++++. ++..+++.++++++|++.++|+++..|++........
T Consensus 142 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------- 202 (436)
T 3qov_A 142 FTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------- 202 (436)
T ss_dssp CHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------
T ss_pred chhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 55544 456678899998874 5789999999999999999999999887754332100
Q ss_pred HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHH
Q 011011 188 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYE 266 (495)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~ 266 (495)
..+..+|.+++||+++++++. .+.+
T Consensus 203 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 228 (436)
T 3qov_A 203 ------------------------------------------------------PRETTLKTLVIGAEPHTDEQRRKIER 228 (436)
T ss_dssp ------------------------------------------------------TTSSSCCEEEEESSCCCHHHHHHHHH
T ss_pred ------------------------------------------------------cccCCccEEEEeCCcCCHHHHHHHHH
Confidence 113456999999999999874 4555
Q ss_pred HcCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhh
Q 011011 267 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 345 (495)
Q Consensus 267 ~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~ 345 (495)
.+|+++++.||+||+++. +..... .....|.+.+++.++|+|+++++++|+|+.|||+|+|+ ++
T Consensus 229 ~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 229 MLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DR 293 (436)
T ss_dssp HHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SC
T ss_pred HhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------Cc
Confidence 679999999999999544 333222 12336778889999999998999999999999999973 34
Q ss_pred hccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----
Q 011011 346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---- 421 (495)
Q Consensus 346 ~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~---- 421 (495)
+.| .++||+|||+|+++++.|.|++... ..++|+||.||+|++ +|++|+|.+||++|.+||.|.+++|++.++
T Consensus 294 ~~~-~~~~y~TGDl~~~~~~gc~cG~~~~-~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~ 370 (436)
T 3qov_A 294 EMM-PLIRYRTRDLTRILPGKCPCGRTHL-RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370 (436)
T ss_dssp CSS-CCCSEEEEEEECEECSCCTTCCCSC-EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred CCc-eEEEEEcCCEEEEcCCCCCCCCCcc-ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence 445 5789999999999997776643110 115899999999998 899999999999999999999999998754
Q ss_pred CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhH-hccCCCccccEEEec--CCCCCCCCee
Q 011011 422 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW-TSKCSFQIGPIHVVD--EPFTVNFLCL 493 (495)
Q Consensus 422 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l 493 (495)
+.+.++|+++ +. ......+.+++++.+++.|+.+ +.+ ..+.+++ +.+.+. ||+
T Consensus 371 ~~l~a~v~~~-~~------------~~~~~~~~~~l~~~l~~~l~~~~~~p-----~~i~~v~~~~lP~t~-GKi 426 (436)
T 3qov_A 371 DEMIVEVELS-DL------------STDNYIELEKIRRDIIRQLKDEILVT-----PKVKLVKKGSLPQSE-GKA 426 (436)
T ss_dssp EEEEEEEEEC-TT------------CCCCHHHHHHHHHHHHHHHHHHHSSC-----CEEEEECTTCCC-------
T ss_pred cEEEEEEEEc-Cc------------cccchhhHHHHHHHHHHHHHHhcCCc-----eEEEEeCCCcccCcC-Ccc
Confidence 5688898886 30 0001112578999999999998 433 5788888 888888 886
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4.6e-46 Score=380.57 Aligned_cols=341 Identities=18% Similarity=0.188 Sum_probs=262.3
Q ss_pred hhcccCCcchhhcccc--cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECCh-h
Q 011011 37 SRKAFSDSNDARKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W 110 (495)
Q Consensus 37 ~~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~ 110 (495)
...|+.++.+.+++++ ....+++++++++|||||||.||+|++||+++......+. ..+++.++|++++.+|+ +
T Consensus 68 ~~lP~~~~~~l~~~~p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 68 AKFPFSTKNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp GGSCCBCHHHHHTTTTTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred HHCCCCcHHHHHhhCCCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 3445555555544333 2356789999999999999999999999999876554433 35778999999999998 6
Q ss_pred hHHHHHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHH
Q 011011 111 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY 187 (495)
Q Consensus 111 h~~~~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (495)
|..++...+.++..|++++.. ++..+++.++++++|++.++|+++..|++........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 787777777788899998874 6889999999999999999999998887654321100
Q ss_pred HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHH
Q 011011 188 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE 266 (495)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~ 266 (495)
..+..+|.+++||+++++++.+ +.+
T Consensus 209 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 234 (443)
T 2y4o_A 209 ------------------------------------------------------PAESSLKIGIFGAEPWTQALRNEVET 234 (443)
T ss_dssp ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred ------------------------------------------------------cccCCceEEEECCCcCCHHHHHHHHH
Confidence 0123458999999999998744 445
Q ss_pred HcCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhh
Q 011011 267 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 345 (495)
Q Consensus 267 ~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~ 345 (495)
.+|+++++.||+||+++. +....... ....+.+.+++.++|+|+++++++|+|+.|||+|+| .|+
T Consensus 235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~------------~t~ 300 (443)
T 2y4o_A 235 RVGIDALDIYGLSEVMGPGVACECVET--KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS------------LTK 300 (443)
T ss_dssp HHTCEEEEEEEETTTTEEEEEEECTTT--CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSC
T ss_pred HhCcCEEeccCchhhcCCeEEeccCCC--CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC------------CCc
Confidence 679999999999997432 33322211 112566778999999998889999999999999996 344
Q ss_pred hccCCCCccccCceeeeccCCCCCCccccC-CeE-----EEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEec
Q 011011 346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 419 (495)
Q Consensus 346 ~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~ 419 (495)
++| .++||+|||+|++++ + |++ +|.||.||+|++ +|++|+|.+||++|.+||.|.++++++.
T Consensus 301 ~~~-p~~~y~TGDl~~~~~----------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~ 368 (443)
T 2y4o_A 301 EAM-PVIRYRTRDLTALLP----------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITL 368 (443)
T ss_dssp SSS-CCSSEEEEEEECEEC----------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred ccC-hhheeecCCEEEEcC----------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEE
Confidence 456 478999999999998 5 665 899999999998 8999999999999999999999998875
Q ss_pred C----CCeeEEEEecCh--HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEe--cCCCCCCCC
Q 011011 420 D----QRRPGAIIVPDK--EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFL 491 (495)
Q Consensus 420 ~----~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 491 (495)
+ .+.+.++|++++ +. .....+.++++++++++|+.+.. .+.++.++ ++.+.+.+|
T Consensus 369 ~~~~~~~~~~a~v~~~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~G 431 (443)
T 2y4o_A 369 SRDGHMDRLDLAVELRSEAAA-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATG 431 (443)
T ss_dssp EEETTEEEEEEEEEECHHHHT-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTS
T ss_pred ecCCCCceEEEEEEECCcccc-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCC
Confidence 3 345778888875 20 00123457899999999998741 22567777 488888999
Q ss_pred ee
Q 011011 492 CL 493 (495)
Q Consensus 492 ~l 493 (495)
|+
T Consensus 432 Ki 433 (443)
T 2y4o_A 432 KA 433 (443)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=9e-46 Score=377.74 Aligned_cols=340 Identities=20% Similarity=0.198 Sum_probs=260.7
Q ss_pred hcccCCcchhhcccc--cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECCh-hh
Q 011011 38 RKAFSDSNDARKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WH 111 (495)
Q Consensus 38 ~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h 111 (495)
..|+.++.+.+++++ ...++++++++++|||||||.||+|++||+++......+. ..++++++|++++.+|+ +|
T Consensus 67 ~lP~~~~~~l~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 67 RFPFTTKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146 (437)
T ss_dssp GSCCBCHHHHHHTTTTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred HCCCCCHHHHHhcCCCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence 445555555443332 3456789999999999999999999999999876554332 35778899999999998 78
Q ss_pred HHHHHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHH
Q 011011 112 VYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT 188 (495)
Q Consensus 112 ~~~~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (495)
..++...+.++..|++++.. ++..+++.++++++|++.++|+++..|++........
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------- 206 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-------------------- 206 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC--------------------
Confidence 88887777788899998864 6889999999999999999999999887754321100
Q ss_pred HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHH
Q 011011 189 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEA 267 (495)
Q Consensus 189 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~ 267 (495)
..+..+|.+++||+++++++.+. .+.
T Consensus 207 -----------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~ 233 (437)
T 2y27_A 207 -----------------------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQR 233 (437)
T ss_dssp -----------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred -----------------------------------------------------cccCCeeEEEEcCccCCHHHHHHHHHH
Confidence 01234589999999999988544 456
Q ss_pred cCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhh
Q 011011 268 IGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 346 (495)
Q Consensus 268 ~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~ 346 (495)
+|+++++.||+||+++. ++...... ...++.+.+++.++|+|+++++++|+|+.|||+|+| .|++
T Consensus 234 ~g~~v~~~YG~TE~~g~~~~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~ 299 (437)
T 2y27_A 234 MGIDAVDIYGLSEVMGPGVASECVET--KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKE 299 (437)
T ss_dssp HTSEEEEEEEETTTTEEEEEECCTTT--CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCS
T ss_pred HCcCEEecCCchhhcCCeeEEecCCC--CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcC
Confidence 89999999999998433 33332221 112566778999999998889999999999999996 3445
Q ss_pred ccCCCCccccCceeeeccCCCCCCccccCCeE-----EEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-
Q 011011 347 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD- 420 (495)
Q Consensus 347 ~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~- 420 (495)
+| .++||+|||+|+++++ +|++ +|.||.||+|++ +|++|+|.+||++|.+||.|.+++|++.+
T Consensus 300 ~~-~~~~y~TGDl~~~~~~---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~ 368 (437)
T 2y27_A 300 AL-PIIRYRTRDLTRLLPG---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTK 368 (437)
T ss_dssp SS-CCCSEEEEEEECEECC---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEE
T ss_pred Cc-hhheeecCCEEEEeCC---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEee
Confidence 56 4789999999999872 2764 899999999998 89999999999999999999999888753
Q ss_pred ---CCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011 421 ---QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 493 (495)
Q Consensus 421 ---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 493 (495)
.+.+.++|+++++. .....+.++++++++++|+.+.. .+..+.++. +.+.+. ||+
T Consensus 369 ~~~~~~l~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi 428 (437)
T 2y27_A 369 EGPLDVLTLNVEPCPET-------------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKA 428 (437)
T ss_dssp ETTEEEEEEEECBCTTT-------------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSC
T ss_pred cCCCceEEEEEEECCCc-------------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccc
Confidence 35678888886531 00113457899999999999851 225677874 777777 886
No 35
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1e-40 Score=344.63 Aligned_cols=247 Identities=23% Similarity=0.317 Sum_probs=197.3
Q ss_pred cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCC------CcEEEEECChhhHHHHHH-hHhHhhcC
Q 011011 53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRG 125 (495)
Q Consensus 53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p~~h~~~~~~-~~~~~~~G 125 (495)
.....++|+++|+|||||||.||||++||+++.+.+..+...++..+ +|++++++|++|.+++.. .+.++..|
T Consensus 177 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 256 (480)
T 3t5a_A 177 FKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256 (480)
T ss_dssp CCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred CCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence 34567899999999999999999999999999888877776677766 899999999999999875 56678999
Q ss_pred ceEEec-------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 011011 126 IELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC 198 (495)
Q Consensus 126 ~~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (495)
+++++. ++..+++.++++++| +..+|+++..++....... .
T Consensus 257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~----~--------------------------- 304 (480)
T 3t5a_A 257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD----D--------------------------- 304 (480)
T ss_dssp CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG----G---------------------------
T ss_pred CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc----c---------------------------
Confidence 998874 577889999999999 8899998877765321000 0
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC------Ce
Q 011011 199 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VK 271 (495)
Q Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g------~~ 271 (495)
.-...++.+|.+++||+++++++ +++.+.++ +.
T Consensus 305 ----------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~ 344 (480)
T 3t5a_A 305 ----------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERV 344 (480)
T ss_dssp ----------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGG
T ss_pred ----------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhh
Confidence 00123456699999999999987 56666663 36
Q ss_pred eeeccCcccCccceeccCCCC-------------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEE
Q 011011 272 VQVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 326 (495)
Q Consensus 272 v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl 326 (495)
+++.||+||++..++...... ...+++|+|++ ++++|+|+++++++|.|++|||
T Consensus 345 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl 423 (480)
T 3t5a_A 345 IRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEI 423 (480)
T ss_dssp EEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEE
T ss_pred ccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEE
Confidence 999999999988776544321 23458999999 9999999888999999999999
Q ss_pred EEccCCcchhccCCchhhhhccC-----------CCCccccCceeeeccCCCCCCccccCCeEEEEcc
Q 011011 327 KVRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383 (495)
Q Consensus 327 ~v~~p~~~~gY~~~~~~t~~~~~-----------~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR 383 (495)
+|+||+++.|||++|++|+++|. .+|||+|||+|+++ ||+|+|+||
T Consensus 424 ~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR 480 (480)
T 3t5a_A 424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480 (480)
T ss_dssp EEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred EEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence 99999999999999999999995 56799999999985 599999998
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=3.5e-32 Score=271.00 Aligned_cols=270 Identities=16% Similarity=0.125 Sum_probs=185.9
Q ss_pred HHHHHhchhhhcccCCcchhhcccc----cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh---hcccCCCCC
Q 011011 28 DEIIDLGRESRKAFSDSNDARKHYK----YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENG 100 (495)
Q Consensus 28 ~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~---~~~~~~~~~ 100 (495)
+++.+..+....|+.+ .+++...+ +..++++++++|+|||||||.||+|++||+++......+ ...+++.++
T Consensus 57 ~~i~~~~dl~~lP~~~-~~l~~~~~~~~~p~~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~ 135 (369)
T 3hgu_A 57 KDVKTINDLRQFSDIS-HCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPS 135 (369)
T ss_dssp HHCCSTGGGGGSCCCG-GGGTTSCGGGGSCTTSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCC
T ss_pred HhCCCHHHHhhCCCch-hhhhcCCHHHcCCccCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCc
Confidence 4555555555566655 55443221 124578999999999999999999999999998877744 345677899
Q ss_pred cEEEEECCh-hhHHHHHHhHhHhhcCceEEec--chH-----------------------hHHHHHhHhCCcEEEeCchH
Q 011011 101 DKFLSMLPP-WHVYERACGYFIFSRGIELMYT--AVR-----------------------NLKDDLQRYQPHYMISVPLV 154 (495)
Q Consensus 101 d~~l~~~p~-~h~~~~~~~~~~~~~G~~~~~~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~ 154 (495)
|++++++|+ +|.+++...+.++..|+.++.. ++. .+++.++++++|++.++|++
T Consensus 136 d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 136 GNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp CEEEECSCCTTCHHHHHHHHHHHHTTSCEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred ceEEEecCCCchhhhHHHHHHHHHcCCEEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 999999999 9999998877778888844442 344 67779999999999999999
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011011 155 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234 (495)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
+..|++......
T Consensus 216 ~~~l~~~~~~~~-------------------------------------------------------------------- 227 (369)
T 3hgu_A 216 LRELLKRPEVVL-------------------------------------------------------------------- 227 (369)
T ss_dssp HHHHTTCHHHHH--------------------------------------------------------------------
T ss_pred HHHHHhhhhhhc--------------------------------------------------------------------
Confidence 988866421100
Q ss_pred HHHHHHHhhcCCceEEEeccCCCChhH-HHHH-HHc-CCeeeeccCcccCccceeccCCCCCCccccccC------cCCc
Q 011011 235 LVYKKIQSAIGISKAGVSGGGSLPMHI-DLFY-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHT 305 (495)
Q Consensus 235 ~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p------~~~~ 305 (495)
..+..+|.+++||+++++++ +.+. +.+ ++++++.||+||+++++..+.. .++|.| .+++
T Consensus 228 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~ 295 (369)
T 3hgu_A 228 -------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFI 295 (369)
T ss_dssp -------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTE
T ss_pred -------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCe
Confidence 01122389999999999987 5555 567 8999999999998866543221 147888 9999
Q ss_pred EEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEcccc
Q 011011 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 385 (495)
Q Consensus 306 ~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~ 385 (495)
+++|+|+++++++|+|+.|||+|++. +++.+ - -.|+|||++...+..+. ..++....+..++|.+
T Consensus 296 ~v~ivD~~~g~~vp~G~~GEl~vt~l------------~~~~~-l-~ry~tgD~~~~~~~~~g-~~~d~~~~v~~~~~~~ 360 (369)
T 3hgu_A 296 TYDVVDSITAQTVEYGERGNVIVTHL------------SPWAF-Y-PRVAERDTAIRLPGVSG-FAGDRLADIEPLKISE 360 (369)
T ss_dssp EEEEECTTTCSBCCTTCEEEEEEEEE------------ETTEE-E-EEEEEEEEEEEECCSTT-CSSCEEEEEEECC---
T ss_pred EEEEECCCCCcCCCCCCceEEEEEEc------------Ccccc-c-ccccCCceEEEecCCCC-CcCcccccceeccccC
Confidence 99999987899999999999999852 22233 1 23999999988763221 1222223466778888
Q ss_pred ceEEeCCce
Q 011011 386 DTIVLSTGE 394 (495)
Q Consensus 386 d~i~~~~G~ 394 (495)
+..++ .|.
T Consensus 361 ~~~~i-~gv 368 (369)
T 3hgu_A 361 GRKVI-EGV 368 (369)
T ss_dssp ---------
T ss_pred CCcee-eec
Confidence 87776 664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.97 E-value=1.6e-09 Score=86.96 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=62.4
Q ss_pred ccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHH
Q 011011 382 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 457 (495)
Q Consensus 382 GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (495)
.|+||||++ +|.||+|.+||++|.+||+|.++++++.++ +.+.++|+..+.. ........++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l 66 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence 489999998 999999999999999999999999998754 3455677665420 0011123556
Q ss_pred HHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011 458 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 493 (495)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 493 (495)
.+.+++.+..+..- . .++.+++ +.+.+ +||+
T Consensus 67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi 99 (109)
T 3lax_A 67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence 67777777665421 1 3566775 56665 6885
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.92 E-value=1.2e-08 Score=104.95 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=81.5
Q ss_pred eEEEeccCCCChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcC-CcEEEEEeCCCC--------
Q 011011 248 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PIN-HTEIKIVDAETN-------- 315 (495)
Q Consensus 248 ~~i~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~i~d~~~~-------- 315 (495)
.++.+|| +.+-...+..-+ +.+++ ..|++||+- +..+......++..+. .+| ..-++.++.+..
T Consensus 308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~ 383 (609)
T 4b2g_A 308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY--FGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS 383 (609)
T ss_dssp EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred EEEccCC--hHHHHHHHHHHcCCCccccCccccccee--eeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCC
Confidence 4555555 333334444333 56766 899999963 3322211111112221 122 244566643321
Q ss_pred -------CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceE
Q 011011 316 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 388 (495)
Q Consensus 316 -------~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i 388 (495)
..+..|+.+||+++.. .|+|. |++||++++..- .+....+.|+||.+++|
T Consensus 384 ~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f------~~~~p~i~~~gR~~~~l 440 (609)
T 4b2g_A 384 PPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGF------HNSAPQFHFVRRKNVLL 440 (609)
T ss_dssp CCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEE------ETTEEEEEEEEETTCCB
T ss_pred CCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeec------CCCCcEEEEEEecCCeE
Confidence 3467899999999743 23332 999999988730 00136899999999999
Q ss_pred EeCCceeecchHHHHHHhc
Q 011011 389 VLSTGENVEPLELEEAALR 407 (495)
Q Consensus 389 ~~~~G~~v~~~~IE~~l~~ 407 (495)
.+ .|+++++.+||+++.+
T Consensus 441 ~~-~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 441 SI-DSDKTDEAELQKAVDN 458 (609)
T ss_dssp CS-SSCCBCHHHHHHHHHH
T ss_pred Ec-cccCCCHHHHHHHHHH
Confidence 97 8999999999998874
No 39
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.91 E-value=3.3e-09 Score=84.95 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=64.4
Q ss_pred ccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHH
Q 011011 382 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT 457 (495)
Q Consensus 382 GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (495)
||.||||++ +|.||+|.+||++|.+||+|.++++++.++ +.+.+++++ ++. ......+.+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~------------~~~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQL------------FTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTT------------CCCCHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCc------------cccchhHHHHH
Confidence 799999998 899999999999999999999888776543 356677776 320 00001234677
Q ss_pred HHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011 458 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL 493 (495)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 493 (495)
.+.+++.+...... . ..+.+++ +.+.+ +||+
T Consensus 67 ~~~i~~~l~~~~~~---~-~~v~~v~~~~lPrt-sGKi 99 (109)
T 3gxs_A 67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA 99 (109)
T ss_dssp HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred HHHHHHHHHHhhCC---c-eEEEEECCCCccCC-CCce
Confidence 88888888754321 2 3788887 78878 8986
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.85 E-value=1.4e-07 Score=96.61 Aligned_cols=136 Identities=11% Similarity=0.047 Sum_probs=82.7
Q ss_pred ChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcCC-cEEEEEeCCC----------CCcCCCCCc
Q 011011 258 PMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAET----------NEVLPAGSK 323 (495)
Q Consensus 258 ~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~----------~~~~~~g~~ 323 (495)
.+-...+...+ +.+++ ..|++||+- +..+......++..+. .+|+ .-++.++.+. -..+..|+.
T Consensus 316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~ 393 (581)
T 4epl_A 316 EPYVPKLRHYAGDLPLVSHDYGSSEGW--IAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEE 393 (581)
T ss_dssp GGGHHHHHHHHTTSCEEECCEEETTEE--EEECCCTTSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCE
T ss_pred HHHHHHHHHHcCCCccccCceecccee--eeeecCCCCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCe
Confidence 33344444434 56766 899999963 3322221111111111 1222 3345553221 135678999
Q ss_pred cEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHH
Q 011011 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE 403 (495)
Q Consensus 324 GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~ 403 (495)
+||+++..+ |.|. |++||++++....+ ....+.|+||.++++.+ .|+++++.+||+
T Consensus 394 YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~------~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~ 449 (581)
T 4epl_A 394 YEVVITNYA---GLYR--------------YRLGDVVKVIGFYN------NTPQLKFICRRNLILSI-NIDKNTERDLQL 449 (581)
T ss_dssp EEEEEESTT---SCSS--------------EEEEEEEEEEEEET------TEEEEEEEEETTCCBCS-SSCCBCHHHHHH
T ss_pred EEEEEeecc---ceee--------------EEcCCEEEEecccC------CCcEEEEEeecCCeEEe-eeeECCHHHHHH
Confidence 999998432 2221 99999998875111 12579999999999998 899999999999
Q ss_pred HHhc------Cc--ccceEEEEec
Q 011011 404 AALR------SS--LIRQIVVIGQ 419 (495)
Q Consensus 404 ~l~~------~p--~V~~~~vvg~ 419 (495)
++.+ .. .|.|..++..
T Consensus 450 al~~a~~~l~~~~~~l~eft~~~d 473 (581)
T 4epl_A 450 SVESAAKRLSEEKIEVIDFSSYID 473 (581)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred HHHHHHHhhcccCCeEEEEEEecC
Confidence 9875 12 4566666554
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.83 E-value=8.8e-08 Score=98.30 Aligned_cols=134 Identities=12% Similarity=0.149 Sum_probs=82.6
Q ss_pred ceEEEeccCCCChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcC-CcEEEEEeCCCC-------
Q 011011 247 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PIN-HTEIKIVDAETN------- 315 (495)
Q Consensus 247 ~~~i~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~i~d~~~~------- 315 (495)
+.++.+|| +.+-...+..-+ +.+++ ..|++||+. +..+......+...+. .++ .+-++.++.+..
T Consensus 302 l~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~ 377 (581)
T 4eql_A 302 IETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVD 377 (581)
T ss_dssp EEEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEE
T ss_pred EEEEcCCC--hHHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeC
Confidence 44556666 333334444433 57776 899999963 2322211111112221 122 245566653321
Q ss_pred -CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCce
Q 011011 316 -EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 394 (495)
Q Consensus 316 -~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~ 394 (495)
..+..|+.+||+++..+ |.|. |++||++++..-. +....+.|+||.+|+|.+ .|+
T Consensus 378 l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~------~~~p~i~f~gR~~~~l~~-~Ge 433 (581)
T 4eql_A 378 LEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFY------NNAPQFKFVRRENVVLSI-DSD 433 (581)
T ss_dssp GGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEE------TTEEEEEEEEETTEEECS-SSC
T ss_pred HHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccC------CCCcEEEEEEecCCEEEe-eee
Confidence 24568999999998432 2221 9999999887400 012579999999999998 899
Q ss_pred eecchHHHHHHhcC
Q 011011 395 NVEPLELEEAALRS 408 (495)
Q Consensus 395 ~v~~~~IE~~l~~~ 408 (495)
++++.+||+++.+.
T Consensus 434 kl~~~~v~~al~~a 447 (581)
T 4eql_A 434 KTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHH
Confidence 99999999999853
No 42
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=48.06 E-value=37 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=27.4
Q ss_pred hHHHHHHhcCcccceEEEEecCCCeeEEEEecChH
Q 011011 399 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 433 (495)
Q Consensus 399 ~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~ 433 (495)
.++++.|.+.|.|.+|..+.-+.+.+.-+.+.+.+
T Consensus 16 ~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~ 50 (83)
T 2cvi_A 16 REVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLK 50 (83)
T ss_dssp HHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHH
T ss_pred HHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHH
Confidence 68999999999999999987666666655555443
No 43
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=47.51 E-value=1.1e+02 Score=30.45 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.++++....| -.+|.+.+...+..+. ...++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 5788887653322 3478888766544443 335789999999988854322 22345567888887764
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSG 161 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 161 (495)
+.+.+...++..++.+++........+...
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~ 138 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKDF 138 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHHH
Confidence 467888899999999999988776655443
No 44
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=43.91 E-value=44 Score=23.57 Aligned_cols=33 Identities=12% Similarity=-0.101 Sum_probs=25.5
Q ss_pred hHHHHHHhcCcccceEEEEecCCCeeEEEEecC
Q 011011 399 LELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD 431 (495)
Q Consensus 399 ~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~ 431 (495)
.++++.|.++|.|.+|..+.-+.+.+.-+.+.+
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d 48 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGVYDIVVKVEADS 48 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSSCSEEEEEECSS
T ss_pred HHHHHHHhCCCCeEEEEEEeccCCEEEEEEECC
Confidence 688999999999999999876666555444444
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=43.60 E-value=1.9e+02 Score=28.77 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=67.5
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++....+..+. ..-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINP 109 (549)
T ss_dssp HTTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCC
Confidence 46778877654221111 124578888766544443 335789999999998754322 22345567888888775
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLYS 160 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 160 (495)
+.+.+...++..++..++..+.....+..
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 46788899999999999998877665543
No 46
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=41.00 E-value=72 Score=32.06 Aligned_cols=83 Identities=8% Similarity=0.000 Sum_probs=58.5
Q ss_pred hhchHHHHHHHHHhhc---ccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----chHhHHHHHhHhCCcEEEe
Q 011011 78 MLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 150 (495)
Q Consensus 78 ~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~ 150 (495)
.+|.+.+...+..+.. ..++.++|++..+++-..-+ ....+.++..|+..+.. +.+.+...++..++.+++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 5788887665544433 34789999999988743221 22345557788887764 4678889999999999999
Q ss_pred CchHHHHHHHH
Q 011011 151 VPLVYETLYSG 161 (495)
Q Consensus 151 ~P~~~~~l~~~ 161 (495)
.......+...
T Consensus 129 ~~~~~~~~~~~ 139 (550)
T 3rix_A 129 SKKGLQKILNV 139 (550)
T ss_dssp CGGGHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88877665443
No 47
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=39.35 E-value=1.5e+02 Score=29.32 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=65.3
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++. . +-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 477888765 1 24588888876555443 335789999999988754322 22345567888888874
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETLY 159 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 159 (495)
+.+.+...++..++.+++..+.....+.
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 4678888999999999999887665543
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=34.31 E-value=2.6e+02 Score=27.72 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=64.1
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.++++....+ .+-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4566776643221 123578888765544433 335789999999988854322 22345557888888774
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETL 158 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l 158 (495)
+.+.+...++..++.+++..+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 467888999999999999988765543
No 49
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=33.34 E-value=2.2e+02 Score=27.53 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=65.0
Q ss_pred CCCCEEEEEeCC--CCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec
Q 011011 57 GSDDIATYVYTS--GTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT 131 (495)
Q Consensus 57 ~~~d~a~i~~TS--GTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~ 131 (495)
.|+.+|++.... +.+| ....+|.+.+...+..+... .+. ++|++..+++-..-+ ....+.++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 578888776542 2233 22567888887655544333 354 899999888754322 22345567888877754
Q ss_pred c-------hHhHHHHHhHhCCcEEEeCchHHHHHH
Q 011011 132 A-------VRNLKDDLQRYQPHYMISVPLVYETLY 159 (495)
Q Consensus 132 ~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~ 159 (495)
+ .+.+...++..++.+++..+.....+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 3 467888999999999999887665544
No 50
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=32.12 E-value=74 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=30.5
Q ss_pred chHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHHH
Q 011011 398 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLM 437 (495)
Q Consensus 398 ~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~~ 437 (495)
..++++.+.++|.|.+|..+.-+.+.+.-+.+.+.+++.+
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v~~~d~~~l~~ 54 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALVRLKDVEELDD 54 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEEEESSGGGHHH
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEEEECCHHHHHH
Confidence 4788899999999999999877767766666666554433
No 51
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=31.20 E-value=2.2e+02 Score=28.18 Aligned_cols=92 Identities=9% Similarity=-0.020 Sum_probs=63.6
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++.. | -.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 5677776532 2 3478888766554443 335789999999988754332 22345567788887764
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETL 158 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l 158 (495)
++..+...++..++..++..+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 467888999999999999988766544
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=28.99 E-value=3.6e+02 Score=26.44 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=64.6
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++.. | ....+|.+.+...+..+. ...++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 5778887653 1 123588888866554443 335789999999998854322 22345567888888774
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHHHHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVYETL 158 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l 158 (495)
+.+.+...++..++.+++........+
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAPVI 129 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHHHH
Confidence 467888899999999999877665444
No 53
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=27.81 E-value=3.5e+02 Score=26.97 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=61.4
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++. . +-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 577888764 1 13578888766544443 335789999999888754322 22345567888888774
Q ss_pred --chHhHHHHHhHhCCcEEEeCchHH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLVY 155 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~~ 155 (495)
+.+.+...++..++.+++..+...
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~ 147 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLV 147 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchh
Confidence 467888899999999999877554
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=27.78 E-value=3e+02 Score=26.97 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++... + +..+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 46777776532 1 24578888766554443 335789999999988854322 22345557788887764
Q ss_pred --chHhHHHHHhHhCCcEEEe--CchHH
Q 011011 132 --AVRNLKDDLQRYQPHYMIS--VPLVY 155 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~--~P~~~ 155 (495)
+.+.+...++..++..++. .+...
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 114 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVA 114 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhh
Confidence 4678888999999998887 55443
No 55
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=26.80 E-value=3e+02 Score=27.52 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=63.9
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc-
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA- 132 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~- 132 (495)
.|+.+|++....+ ..-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..+
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 5788887765421 123578888766554443 335788999999988754332 223455678888877643
Q ss_pred ------hHhHHHHHhHhCCcEEEeCchHHHHH
Q 011011 133 ------VRNLKDDLQRYQPHYMISVPLVYETL 158 (495)
Q Consensus 133 ------~~~~~~~i~~~~~t~~~~~P~~~~~l 158 (495)
.+.+...++..++.+++........+
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 129 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 25677788999999999887665544
No 56
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=25.83 E-value=3.1e+02 Score=27.58 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=63.5
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++..... |. ...+|.+.+......+. ...++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g~--~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--GN--EKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--SC--EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--CC--EeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 6889998865331 21 34578888765544433 345889999999998754322 22344557788887764
Q ss_pred --chHhHHHHHhHhCCcEEEeCchH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLV 154 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~ 154 (495)
+.+.+...++..++..++..+..
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESST
T ss_pred cCCHHHHHHHHHhcCCCEEEEecch
Confidence 46788899999999998876543
No 57
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=24.61 E-value=3.2e+02 Score=27.18 Aligned_cols=81 Identities=11% Similarity=-0.017 Sum_probs=56.6
Q ss_pred hhchHHHHHHHHHhhc---ccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----chHhHHHHHhHhCCcEEEe
Q 011011 78 MLTHKNLLHQIRSLYD---IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 150 (495)
Q Consensus 78 ~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~ 150 (495)
.+|.+.+...+..+.. ..++.++|++..+++-..-+ ....+.++..|+..+.. +.+.+...++..++.+++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEF-FIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 4788887665554433 35789999999888743221 12234557788877764 4678889999999999999
Q ss_pred CchHHHHHH
Q 011011 151 VPLVYETLY 159 (495)
Q Consensus 151 ~P~~~~~l~ 159 (495)
.+.....+.
T Consensus 131 ~~~~~~~~~ 139 (548)
T 2d1s_A 131 SKKGLDKVI 139 (548)
T ss_dssp CTTTHHHHH
T ss_pred cHHHHHHHH
Confidence 887765543
No 58
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=22.73 E-value=3.7e+02 Score=26.86 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=60.8
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++. . +-.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+..
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 578888764 1 12478888766554443 335789999999998754332 22345567888887774
Q ss_pred --chHhHHHHHhHhCCcEEEeCchH
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPLV 154 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~~ 154 (495)
+.+.+...++..++.+++.....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 46788889999999998876543
No 59
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=22.37 E-value=25 Score=30.70 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCCCCCCchhhhhchHHHH
Q 011011 67 TSGTTGNPKGVMLTHKNLL 85 (495)
Q Consensus 67 TSGTTG~PK~v~~th~~l~ 85 (495)
+|+.|| ||||.-.++.+-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 688899 999998888765
No 60
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=21.79 E-value=4e+02 Score=26.39 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=56.4
Q ss_pred hhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc-----------hHhHHHHHhH
Q 011011 77 VMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-----------VRNLKDDLQR 142 (495)
Q Consensus 77 v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~-----------~~~~~~~i~~ 142 (495)
-.+|.+.+...+..+. ...++.++|++..++|-..-+ ....+.++..|+..+..+ ...+...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 3578888766555443 335789999999998854322 223455678888777643 4678888999
Q ss_pred hCCcEEEeCchHHHHH
Q 011011 143 YQPHYMISVPLVYETL 158 (495)
Q Consensus 143 ~~~t~~~~~P~~~~~l 158 (495)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999887765544
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=21.72 E-value=3.3e+02 Score=27.27 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=64.6
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc---cc-CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~---~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~- 131 (495)
.|+.+|++.... .| ....+|.+.+...+..+.. .. ++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 567888775431 12 1245788887655444332 23 888999999988854322 22345567788887774
Q ss_pred ---chHhHHHHHhHhCCcEEEeCchHHHHH
Q 011011 132 ---AVRNLKDDLQRYQPHYMISVPLVYETL 158 (495)
Q Consensus 132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l 158 (495)
+.+.+...++..++.+++..+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 467888899999999999887765544
No 62
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.28 E-value=2e+02 Score=22.80 Aligned_cols=36 Identities=0% Similarity=-0.238 Sum_probs=26.6
Q ss_pred chHHHHHHhcCcccceEEEEecCCCeeEEEEecChH
Q 011011 398 PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE 433 (495)
Q Consensus 398 ~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~ 433 (495)
..++.+.+.++|.|.+|..+.-+.+.+.-+.+.+.+
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~ 117 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSID 117 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHH
Confidence 468889999999999999986555555555555443
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=20.81 E-value=3.1e+02 Score=26.89 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=56.3
Q ss_pred hhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----chHhHHHHHhHhCCcEEEe
Q 011011 78 MLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMIS 150 (495)
Q Consensus 78 ~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~ 150 (495)
.+|.+.+...+..+. ...++.++|++..+++-..-+ ....+.++..|+..+.. +.+.+...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 478888766554443 335789999999988754322 22345567888887774 4678889999999999998
Q ss_pred CchHHHHH
Q 011011 151 VPLVYETL 158 (495)
Q Consensus 151 ~P~~~~~l 158 (495)
.+.....+
T Consensus 107 ~~~~~~~~ 114 (503)
T 4fuq_A 107 DPSKRDGI 114 (503)
T ss_dssp CGGGTTTT
T ss_pred CchhhHHH
Confidence 87655433
No 64
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=20.02 E-value=3.8e+02 Score=26.51 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011 57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-- 131 (495)
Q Consensus 57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-- 131 (495)
.|+.+|++.. +-.+|.+.+...+..+. ...++.++|++..++|-..-+ ....+.++..|+..+..
T Consensus 43 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIICG---------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEF-YIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH-HHHHHHHHHhCcEEecCCC
Confidence 5788887741 23578888766544443 335789999999888754222 22345557788877754
Q ss_pred --chHhHHHHHhHhCCcEEEeCch
Q 011011 132 --AVRNLKDDLQRYQPHYMISVPL 153 (495)
Q Consensus 132 --~~~~~~~~i~~~~~t~~~~~P~ 153 (495)
+...+...++..++.+++....
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCHHHHHHHHHhcCeeEEEEccc
Confidence 4678888999999999987654
Done!