Query 011012
Match_columns 495
No_of_seqs 155 out of 707
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 5E-108 1E-112 854.6 36.9 368 107-488 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 96.2 0.055 1.2E-06 53.7 11.7 191 199-442 33-227 (247)
3 TIGR00740 methyltransferase, p 95.1 0.23 5E-06 48.7 11.2 106 224-357 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 93.4 3.4 7.3E-05 39.9 15.3 113 214-357 35-149 (231)
5 TIGR02716 C20_methyl_CrtF C-20 93.2 1.6 3.4E-05 44.6 13.2 117 213-362 138-258 (306)
6 PLN02233 ubiquinone biosynthes 93.0 6.8 0.00015 39.3 17.1 132 213-374 62-195 (261)
7 PRK06202 hypothetical protein; 89.6 6 0.00013 38.5 12.4 109 221-357 57-165 (232)
8 PF13847 Methyltransf_31: Meth 88.8 3.2 7E-05 37.5 9.3 107 223-358 2-109 (152)
9 TIGR01934 MenG_MenH_UbiE ubiqu 88.7 22 0.00047 33.6 17.3 116 212-359 27-144 (223)
10 PRK14103 trans-aconitate 2-met 87.0 4.2 9.1E-05 40.3 9.6 105 215-358 20-125 (255)
11 PF13649 Methyltransf_25: Meth 84.6 3.4 7.4E-05 34.6 6.6 97 228-351 1-99 (101)
12 TIGR03438 probable methyltrans 83.7 15 0.00032 37.7 12.0 109 226-358 65-176 (301)
13 TIGR00477 tehB tellurite resis 81.9 11 0.00024 36.0 9.6 111 211-354 17-128 (195)
14 PF12847 Methyltransf_18: Meth 81.5 3.8 8.2E-05 34.5 5.7 105 227-358 4-110 (112)
15 PRK01683 trans-aconitate 2-met 80.4 14 0.00031 36.3 10.2 111 212-358 19-129 (258)
16 PF01209 Ubie_methyltran: ubiE 79.9 22 0.00048 35.3 11.3 115 215-358 38-153 (233)
17 PF09243 Rsm22: Mitochondrial 79.7 17 0.00037 36.9 10.7 138 208-377 13-156 (274)
18 PRK12335 tellurite resistance 79.7 13 0.00029 37.6 9.9 108 214-354 110-218 (287)
19 PF00891 Methyltransf_2: O-met 77.8 14 0.0003 36.2 9.1 113 214-365 90-206 (241)
20 TIGR03587 Pse_Me-ase pseudamin 76.8 26 0.00056 33.9 10.5 100 227-361 46-145 (204)
21 TIGR03439 methyl_EasF probable 76.6 36 0.00078 35.6 12.1 127 215-361 69-199 (319)
22 PF03291 Pox_MCEL: mRNA cappin 75.2 20 0.00044 37.6 9.9 116 224-356 62-183 (331)
23 PLN02336 phosphoethanolamine N 74.2 53 0.0011 35.6 13.2 138 214-386 27-172 (475)
24 PRK11207 tellurite resistance 72.5 32 0.00069 32.8 9.9 111 212-355 18-130 (197)
25 PRK11036 putative S-adenosyl-L 71.1 25 0.00054 34.8 9.1 110 215-357 36-147 (255)
26 PRK00216 ubiE ubiquinone/menaq 69.2 1.1E+02 0.0023 29.1 16.3 41 217-265 44-84 (239)
27 smart00138 MeTrc Methyltransfe 69.0 37 0.00081 34.2 9.9 44 222-265 97-140 (264)
28 PLN02336 phosphoethanolamine N 68.7 1.1E+02 0.0025 33.0 14.3 113 213-358 255-368 (475)
29 COG2227 UbiG 2-polyprenyl-3-me 63.7 14 0.0003 37.2 5.4 100 224-357 59-159 (243)
30 PRK00107 gidB 16S rRNA methylt 63.7 1.4E+02 0.003 28.6 13.0 96 226-358 47-144 (187)
31 PF13679 Methyltransf_32: Meth 63.6 41 0.00089 30.3 8.2 40 221-265 22-61 (141)
32 TIGR00138 gidB 16S rRNA methyl 62.3 73 0.0016 30.2 10.0 96 226-358 44-141 (181)
33 PF08241 Methyltransf_11: Meth 62.2 22 0.00047 28.3 5.6 93 229-356 1-94 (95)
34 PRK05785 hypothetical protein; 59.2 1.3E+02 0.0028 29.4 11.5 91 225-355 52-143 (226)
35 PLN02244 tocopherol O-methyltr 58.7 94 0.002 32.4 10.9 98 225-355 119-219 (340)
36 TIGR02021 BchM-ChlM magnesium 57.8 78 0.0017 30.4 9.5 116 207-357 36-156 (219)
37 PTZ00098 phosphoethanolamine N 56.6 2E+02 0.0044 28.7 12.6 116 210-357 38-154 (263)
38 PF07521 RMMBL: RNA-metabolisi 56.0 20 0.00043 26.1 3.8 40 318-359 1-40 (43)
39 TIGR02081 metW methionine bios 51.5 93 0.002 29.3 8.8 38 215-264 6-43 (194)
40 PRK09489 rsmC 16S ribosomal RN 51.0 2.1E+02 0.0045 30.1 12.0 115 214-357 186-301 (342)
41 PLN02585 magnesium protoporphy 49.7 1.3E+02 0.0027 31.5 10.0 103 224-357 144-248 (315)
42 PF03848 TehB: Tellurite resis 48.1 2.1E+02 0.0046 27.7 10.7 111 214-357 20-131 (192)
43 PRK15068 tRNA mo(5)U34 methylt 48.0 2.1E+02 0.0046 29.7 11.4 112 216-358 114-225 (322)
44 cd00635 PLPDE_III_YBL036c_like 47.7 56 0.0012 31.7 6.7 69 225-299 118-197 (222)
45 TIGR02072 BioC biotin biosynth 47.2 1.1E+02 0.0025 28.8 8.7 111 213-358 20-134 (240)
46 PRK08317 hypothetical protein; 46.8 2.5E+02 0.0054 26.3 14.4 42 216-265 11-52 (241)
47 PRK00121 trmB tRNA (guanine-N( 44.5 2.1E+02 0.0045 27.4 10.1 111 224-357 40-154 (202)
48 PF13489 Methyltransf_23: Meth 44.1 1.3E+02 0.0028 26.4 8.1 93 222-357 20-113 (161)
49 PRK10258 biotin biosynthesis p 43.3 2.5E+02 0.0054 27.4 10.7 43 212-265 30-72 (251)
50 TIGR02129 hisA_euk phosphoribo 42.7 31 0.00067 35.0 4.1 29 221-253 50-78 (253)
51 PRK15001 SAM-dependent 23S rib 42.4 1.7E+02 0.0037 31.3 9.9 121 214-358 218-339 (378)
52 PRK11705 cyclopropane fatty ac 41.9 2.2E+02 0.0048 30.3 10.7 107 215-357 158-265 (383)
53 PLN02446 (5-phosphoribosyl)-5- 41.7 37 0.00081 34.6 4.5 27 221-248 55-81 (262)
54 TIGR00452 methyltransferase, p 41.0 2.5E+02 0.0055 29.2 10.6 41 215-265 112-152 (314)
55 TIGR03534 RF_mod_PrmC protein- 39.2 2.9E+02 0.0063 26.6 10.3 54 225-297 88-142 (251)
56 PRK07580 Mg-protoporphyrin IX 36.6 3.8E+02 0.0082 25.4 11.0 98 224-356 63-162 (230)
57 PRK11873 arsM arsenite S-adeno 32.3 4.8E+02 0.01 25.7 10.9 100 226-357 79-181 (272)
58 smart00828 PKS_MT Methyltransf 31.7 3.1E+02 0.0067 26.1 9.1 100 227-357 2-102 (224)
59 cd06841 PLPDE_III_MccE_like Ty 30.7 1.9E+02 0.0041 30.4 7.9 71 224-297 125-207 (379)
60 PLN02396 hexaprenyldihydroxybe 30.7 2.7E+02 0.0057 29.2 8.9 99 226-358 133-234 (322)
61 PRK06922 hypothetical protein; 30.6 3.7E+02 0.008 31.2 10.5 107 226-357 420-535 (677)
62 PRK03646 dadX alanine racemase 30.5 1.6E+02 0.0036 30.9 7.4 36 225-266 118-158 (355)
63 COG2242 CobL Precorrin-6B meth 30.2 92 0.002 30.3 4.9 50 219-286 29-81 (187)
64 COG4106 Tam Trans-aconitate me 29.9 2.2E+02 0.0049 28.7 7.6 111 219-365 25-135 (257)
65 TIGR01626 ytfJ_HI0045 conserve 29.8 1.6E+02 0.0035 28.4 6.6 111 224-349 59-182 (184)
66 PF02353 CMAS: Mycolic acid cy 28.4 3.4E+02 0.0073 27.6 9.0 113 214-358 52-165 (273)
67 COG0357 GidB Predicted S-adeno 28.0 1.5E+02 0.0032 29.4 6.0 59 225-302 68-127 (215)
68 PRK05134 bifunctional 3-demeth 27.3 4.7E+02 0.01 25.0 9.6 102 224-358 48-150 (233)
69 TIGR00044 pyridoxal phosphate 25.8 1.9E+02 0.0041 28.4 6.5 61 225-291 122-189 (229)
70 PRK13168 rumA 23S rRNA m(5)U19 24.0 5.9E+02 0.013 27.5 10.5 102 224-358 297-399 (443)
71 TIGR02469 CbiT precorrin-6Y C5 22.9 2.3E+02 0.0049 23.7 5.7 30 227-265 22-51 (124)
72 PF05175 MTS: Methyltransferas 22.1 2.2E+02 0.0049 26.2 5.9 116 212-355 19-136 (170)
73 PF15609 PRTase_2: Phosphoribo 22.0 5.6E+02 0.012 25.1 8.6 69 220-300 118-187 (191)
74 PF10524 NfI_DNAbd_pre-N: Nucl 21.9 45 0.00097 24.6 0.9 16 45-60 3-18 (44)
75 COG1341 Predicted GTPase or GT 21.9 9.9E+02 0.021 26.0 11.3 25 337-361 187-211 (398)
76 COG0123 AcuC Deacetylases, inc 21.8 63 0.0014 34.2 2.3 21 222-242 152-174 (340)
77 PRK10909 rsmD 16S rRNA m(2)G96 21.5 7.4E+02 0.016 23.9 10.3 104 226-362 55-162 (199)
78 COG4783 Putative Zn-dependent 21.4 1.2E+02 0.0026 33.5 4.4 51 273-329 73-123 (484)
79 PLN02232 ubiquinone biosynthes 20.9 6.4E+02 0.014 23.0 9.4 22 427-448 129-150 (160)
80 COG2890 HemK Methylase of poly 20.1 3.2E+02 0.0069 27.8 7.0 47 227-292 113-159 (280)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=4.8e-108 Score=854.58 Aligned_cols=368 Identities=46% Similarity=0.725 Sum_probs=340.5
Q ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHhcccCCCCCChhhhHHHHHHHHHHhhhhccCCCCCCCcccccCCCCCCCCC
Q 011012 107 LVHLLMAAAEALTGVNKSRELAQVILIRLKELVSPNDGSNMERLAAYFTDALQGLLEGAGGVHGNNKHYTSNGPHHRDDH 186 (495)
Q Consensus 107 L~~LLl~cAeAV~~~~~~~~~A~~iL~~L~~~aSp~~G~~~qRlA~yFaeAL~~Rl~g~~~~~~~~~~~~~~~p~~~~~~ 186 (495)
|+|||++||+||++ +|.+.|+.+|++|++++||. |+|+||||+||++||.+||.+++++.+.... +......
T Consensus 1 L~~lLl~cA~Av~~--~~~~~A~~lL~~l~~~as~~-g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~-----~~~~~~~ 72 (374)
T PF03514_consen 1 LVQLLLACAEAVAA--GDFARAQELLARLRQLASPT-GDPMQRLAAYFAEALAARLSGSGPGLYSALP-----PSSPSPS 72 (374)
T ss_pred CHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHhhHHHHHhccCcccccCCC-----Ccccccc
Confidence 68999999999997 57999999999999999986 7999999999999999999997765432221 1101122
Q ss_pred ChHHHHHHHHHhhccCCccchhhhhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCC
Q 011012 187 HHTDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRG 266 (495)
Q Consensus 187 ~~~~~l~Af~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p 266 (495)
...+.+.||++||++|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|| |+||||||++|
T Consensus 73 ~~~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gp--p~LrIT~i~~~ 150 (374)
T PF03514_consen 73 ESSEQLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGP--PSLRITGIGPP 150 (374)
T ss_pred chHHHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCC--CeEEEEeccCC
Confidence 3667899999999999999999999999999999999999999999999999999999999999999 89999999987
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCC---CchHHHHH
Q 011012 267 GSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRA---PDSIASFL 343 (495)
Q Consensus 267 ~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~---~~~~~~fL 343 (495)
.++ +...+++||+||.+||+++||||||++|..+++|++++++|++++||+|||||+|+||||...+ +++++.||
T Consensus 151 ~~~--~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L 228 (374)
T PF03514_consen 151 NSG--SADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL 228 (374)
T ss_pred CCC--cHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH
Confidence 655 7789999999999999999999999998889999999999999999999999999999997432 34789999
Q ss_pred HHhhhcCCcEEEEEeecCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCCCcHHHHHHHHHHhhhhhhhhhhhcc--ccc
Q 011012 344 SGAKTLNPRLVTLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIY--RTC 421 (495)
Q Consensus 344 ~~ir~L~PkvvtlvE~ea~~n~~p~F~~RF~eaL~yYsalFDSLda~~p~~s~~R~~iEr~~lg~eI~niVa~~~--r~e 421 (495)
+.||+|+|+|||++|+|++||+ |+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||++ |.|
T Consensus 229 ~~ir~L~P~vvv~~E~ea~~n~-~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~e 307 (374)
T PF03514_consen 229 RVIRSLNPKVVVLVEQEADHNS-PSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVE 307 (374)
T ss_pred HHHHhcCCCEEEEEeecCCCCC-CchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccc
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999999986 679
Q ss_pred CcccccchhhhhccCCceeccCCcchHHHHHHHhcccC-CCCeEEEeCCCEEEEEECCceEEEEEeee
Q 011012 422 GEEEVYSWGDWLGVVGFKPVNISFANHCQAKLLLGLFN-DGYRVEELANNRLVLGWKSRRLLSASVWT 488 (495)
Q Consensus 422 r~E~~~~W~~rm~~AGF~~v~ls~~~~~qAk~ll~~~~-~gy~v~e~~~~~L~LgWk~~pL~s~SaWr 488 (495)
|||++++|+.||++|||+++|+|++++.|||+||+.|. +||+|+++ +|||+||||++||+++||||
T Consensus 308 R~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~-~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 308 RHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEED-GGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred cccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEc-CCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999999999999999987 89999974 79999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.19 E-value=0.055 Score=53.69 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=98.1
Q ss_pred hccCCccchhhhhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHH
Q 011012 199 QDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQE 278 (495)
Q Consensus 199 ~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~e 278 (495)
....|.+...|-.++..+-.-+. ..-+|+|+|.|.|.-- ..|+.+-.. |..++|||+. +...++.
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~----~~l~~~~~~---~~~~v~gvD~------S~~ml~~ 97 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAAT----LSVRRNIHH---DNCKIIAIDN------SPAMIER 97 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHH----HHHHHhcCC---CCCeEEEEeC------CHHHHHH
Confidence 44568887777666654322222 2347999999998743 334432222 4688999974 3445555
Q ss_pred HHHHHHHHHHHcCC--CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCc-EE
Q 011012 279 TGRRLVAFAASIGQ--PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPR-LV 354 (495)
Q Consensus 279 tg~rL~~fA~slgv--pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pk-vv 354 (495)
+.+++.+ .|+ .++|... +.+++. ....++++ +.+.|||+. +..+..+|+.| +.|+|. ++
T Consensus 98 A~~~~~~----~~~~~~v~~~~~---d~~~~~-----~~~~D~vv--~~~~l~~l~---~~~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 98 CRRHIDA----YKAPTPVDVIEG---DIRDIA-----IENASMVV--LNFTLQFLE---PSERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred HHHHHHh----cCCCCCeEEEeC---ChhhCC-----CCCCCEEe--hhhHHHhCC---HHHHHHHHHHHHHhcCCCCEE
Confidence 5555433 333 4555432 222222 12234444 446788883 23456677766 678997 55
Q ss_pred EEEeecCCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCCCcHHHHHHHHHHhhhhhhhhhhhcccccCcccccchhhhhc
Q 011012 355 TLVEEETGPIGDGGFVSRFMDSLHHYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLARIYRTCGEEEVYSWGDWLG 434 (495)
Q Consensus 355 tlvE~ea~~n~~p~F~~RF~eaL~yYsalFDSLda~~p~~s~~R~~iEr~~lg~eI~niVa~~~r~er~E~~~~W~~rm~ 434 (495)
+++|.-...+ +..-..+.+..+.|. ...+++. ..+++. .....|++ ..++..+..++|+
T Consensus 161 ~l~e~~~~~~--~~~~~~~~~~~~~~~-----~~~g~s~-----~ei~~~--~~~~~~~~-------~~~~~~~~~~~L~ 219 (247)
T PRK15451 161 VLSEKFSFED--AKVGELLFNMHHDFK-----RANGYSE-----LEISQK--RSMLENVM-------LTDSVETHKARLH 219 (247)
T ss_pred EEEEecCCCc--chhHHHHHHHHHHHH-----HHcCCCH-----HHHHHH--HHHHHhhc-------ccCCHHHHHHHHH
Confidence 5555322222 334444444332221 1122221 111110 11122221 2355678888999
Q ss_pred cCCceecc
Q 011012 435 VVGFKPVN 442 (495)
Q Consensus 435 ~AGF~~v~ 442 (495)
.|||+.+.
T Consensus 220 ~aGF~~v~ 227 (247)
T PRK15451 220 KAGFEHSE 227 (247)
T ss_pred HcCchhHH
Confidence 99998753
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.06 E-value=0.23 Score=48.70 Aligned_cols=106 Identities=14% Similarity=0.233 Sum_probs=59.8
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
..-+|+|+|.|.|. ++..|+.+-.. |..++|||+. +...++.+.+++.++. .+.+++|... +
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~~---p~~~v~gvD~------s~~ml~~a~~~~~~~~--~~~~v~~~~~---d 114 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNINQ---PNVKIIGIDN------SQPMVERCRQHIAAYH--SEIPVEILCN---D 114 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcCC---CCCeEEEEeC------CHHHHHHHHHHHHhcC--CCCCeEEEEC---C
Confidence 34579999999985 55555555322 4689999974 3344555555554321 1234555432 2
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..++. ..+..+ |-|.+.|||+. +.....+|+.+ +.|+|.-.+++
T Consensus 115 ~~~~~-----~~~~d~--v~~~~~l~~~~---~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 115 IRHVE-----IKNASM--VILNFTLQFLP---PEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred hhhCC-----CCCCCE--EeeecchhhCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 22222 122333 34556788883 23355677766 66899866655
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=93.44 E-value=3.4 Score=39.94 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=56.8
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.++..+.=...-+|+|+|.|.|.- ...|+.+- + |..++|||+. +...++.+.+++ +..+++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~----~~~la~~~--~--~~~~v~gvD~------s~~~~~~a~~~~----~~~~~~ 96 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADW----SIALAEAV--G--PEGHVIGLDF------SENMLSVGRQKV----KDAGLH 96 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHH----HHHHHHHh--C--CCCEEEEEEC------CHHHHHHHHHHH----HhcCCC
Confidence 4455555433345799999998873 33444432 2 4578999974 223344444343 233443
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~Pkvvtlv 357 (495)
.+|... +.+++. +.-..=+.|+ +.+.+|++. + ...+|+. .+.|+|.-.+++
T Consensus 97 ~v~~~~~---d~~~~~---~~~~~fD~V~--~~~~l~~~~----~-~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 97 NVELVHG---NAMELP---FDDNSFDYVT--IGFGLRNVP----D-YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred ceEEEEe---chhcCC---CCCCCccEEE--EecccccCC----C-HHHHHHHHHHHcCcCeEEEE
Confidence 343321 122221 1111113444 345677762 2 2455654 577899855544
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.21 E-value=1.6 Score=44.56 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=66.3
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.+.|++.+.-.+.-+|+|+|-|.|. +...++++. |.+++|+++.| ..++.+ .+.++..|+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~-----p~~~~~~~D~~-------~~~~~a----~~~~~~~gl 197 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF-----PELDSTILNLP-------GAIDLV----NENAAEKGV 197 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC-----CCCEEEEEecH-------HHHHHH----HHHHHhCCc
Confidence 5667777765566799999999884 445555553 47899999642 233333 334555565
Q ss_pred C--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCc-EEEEEeecCC
Q 011012 293 P--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPR-LVTLVEEETG 362 (495)
Q Consensus 293 p--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pk-vvtlvE~ea~ 362 (495)
. ++|... +-. +. . +...+++++. ..||+.. +.....+|+.+ +.|+|. .++++|.-.+
T Consensus 198 ~~rv~~~~~--d~~-~~---~--~~~~D~v~~~--~~lh~~~---~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 198 ADRMRGIAV--DIY-KE---S--YPEADAVLFC--RILYSAN---EQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred cceEEEEec--Ccc-CC---C--CCCCCEEEeE--hhhhcCC---hHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3 555442 211 11 1 1123444433 3466652 23445677766 689996 5555665443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.97 E-value=6.8 Score=39.29 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=68.9
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
...+++.+.-...-+|+|+|.|.|. +...|+.+- + |.-+||||+. +...++.+.+|....++...-
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~-~---~~~~V~gvD~------S~~ml~~A~~r~~~~~~~~~~ 127 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV-G---SDGKVMGLDF------SSEQLAVAASRQELKAKSCYK 127 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh-C---CCCEEEEEEC------CHHHHHHHHHHhhhhhhccCC
Confidence 3344444433345689999999997 334555543 2 3468999974 344555555554322222223
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcE-EEEEeecCCCCCCCChH
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRL-VTLVEEETGPIGDGGFV 370 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~Pkv-vtlvE~ea~~n~~p~F~ 370 (495)
..+|.... .+++ .+.++..=+|-+.+.|||+. ++ ..+|+. .|-|+|.- ++++| -.... ..|.
T Consensus 128 ~i~~~~~d---~~~l-----p~~~~sfD~V~~~~~l~~~~----d~-~~~l~ei~rvLkpGG~l~i~d--~~~~~-~~~~ 191 (261)
T PLN02233 128 NIEWIEGD---ATDL-----PFDDCYFDAITMGYGLRNVV----DR-LKAMQEMYRVLKPGSRVSILD--FNKST-QPFT 191 (261)
T ss_pred CeEEEEcc---cccC-----CCCCCCEeEEEEecccccCC----CH-HHHHHHHHHHcCcCcEEEEEE--CCCCC-cHHH
Confidence 45554322 2222 22233333555667789883 33 445555 47799974 33443 22222 4455
Q ss_pred HHHH
Q 011012 371 SRFM 374 (495)
Q Consensus 371 ~RF~ 374 (495)
..+.
T Consensus 192 ~~~~ 195 (261)
T PLN02233 192 TSMQ 195 (261)
T ss_pred HHHH
Confidence 5443
No 7
>PRK06202 hypothetical protein; Provisional
Probab=89.55 E-value=6 Score=38.53 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=56.0
Q ss_pred hcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeee
Q 011012 221 ANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCR 300 (495)
Q Consensus 221 ~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~ 300 (495)
...+...|+|+|-|.|. ....|..... ..| |..+||||+. +...++...++. +.-|+.+.. ..
T Consensus 57 ~~~~~~~iLDlGcG~G~-~~~~L~~~~~-~~g---~~~~v~gvD~------s~~~l~~a~~~~----~~~~~~~~~--~~ 119 (232)
T PRK06202 57 SADRPLTLLDIGCGGGD-LAIDLARWAR-RDG---LRLEVTAIDP------DPRAVAFARANP----RRPGVTFRQ--AV 119 (232)
T ss_pred CCCCCcEEEEeccCCCH-HHHHHHHHHH-hCC---CCcEEEEEcC------CHHHHHHHHhcc----ccCCCeEEE--Ee
Confidence 33456789999999996 3333322222 224 3579999974 223333332221 122444443 22
Q ss_pred cCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 301 LDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 301 ~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
.+.+ . ..++..=+|-|.+.|||+.. ..+..+|+.+.++.-..+++.
T Consensus 120 ~~~l---~-----~~~~~fD~V~~~~~lhh~~d---~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 120 SDEL---V-----AEGERFDVVTSNHFLHHLDD---AEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cccc---c-----ccCCCccEEEECCeeecCCh---HHHHHHHHHHHHhcCeeEEEe
Confidence 2222 1 11233334455567899842 235678888866554555543
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=88.80 E-value=3.2 Score=37.51 Aligned_cols=107 Identities=21% Similarity=0.170 Sum_probs=59.2
Q ss_pred CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeec
Q 011012 223 DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRL 301 (495)
Q Consensus 223 ~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~ 301 (495)
.+..+|+|+|.|.|..=.. |+.+- + |..+||||+. +. +.=++..+.++..+++ .+|...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~----l~~~~-~---~~~~i~gvD~------s~----~~i~~a~~~~~~~~~~ni~~~~~-- 61 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQ----LAKEL-N---PGAKIIGVDI------SE----EMIEYAKKRAKELGLDNIEFIQG-- 61 (152)
T ss_dssp TTTSEEEEET-TTSHHHHH----HHHHS-T---TTSEEEEEES------SH----HHHHHHHHHHHHTTSTTEEEEES--
T ss_pred CCCCEEEEecCcCcHHHHH----HHHhc-C---CCCEEEEEEC------cH----HHHHHhhcccccccccccceEEe--
Confidence 3567899999999865433 44221 1 2456999974 22 3334455677778887 777653
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
+++++... +. +.+=+|.+...+||+. .....+-+..+.|+|..++++.
T Consensus 62 -d~~~l~~~-~~---~~~D~I~~~~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 62 -DIEDLPQE-LE---EKFDIIISNGVLHHFP----DPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp -BTTCGCGC-SS---TTEEEEEEESTGGGTS----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ehhccccc-cC---CCeeEEEEcCchhhcc----CHHHHHHHHHHHcCCCcEEEEE
Confidence 33333322 22 2232344444457762 2333334446889998666553
No 9
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=88.71 E-value=22 Score=33.59 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=59.9
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
.-+.+++.+...+...|+|+|.+.|. +...++.+- | +..++++|+. +...++.+.+++. .+
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~--~~~~~~~iD~------~~~~~~~~~~~~~-----~~ 87 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--P--DRGKVTGVDF------SSEMLEVAKKKSE-----LP 87 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--C--CCceEEEEEC------CHHHHHHHHHHhc-----cC
Confidence 33456666655567799999998885 334444442 3 3478999963 2334444443332 22
Q ss_pred CCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE-EEee
Q 011012 292 QPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT-LVEE 359 (495)
Q Consensus 292 vpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt-lvE~ 359 (495)
-...|....+. ++. ..++..=+|-+.+.+|++. + ...+|+.+ +.|+|.-.+ +++.
T Consensus 88 ~~i~~~~~d~~---~~~-----~~~~~~D~i~~~~~~~~~~----~-~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 88 LNIEFIQADAE---ALP-----FEDNSFDAVTIAFGLRNVT----D-IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCceEEecchh---cCC-----CCCCcEEEEEEeeeeCCcc----c-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 23444432221 111 1122233444556677762 2 34555554 668887544 3443
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=86.99 E-value=4.2 Score=40.26 Aligned_cols=105 Identities=24% Similarity=0.261 Sum_probs=58.5
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.+++.+.-...-+|+|+|-|.|. +...|+.+- |..++|||+. +.. ..+.|+..++.|
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~-----p~~~v~gvD~------s~~--------~~~~a~~~~~~~ 76 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW-----PGAVIEALDS------SPE--------MVAAARERGVDA 76 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC-----CCCEEEEEEC------CHH--------HHHHHHhcCCcE
Confidence 46666654555789999999983 556677663 2467999974 122 233344445543
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEEEEe
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVTLVE 358 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~PkvvtlvE 358 (495)
. . .+.+++.+ .+..=+|-|...|||+. +. ..+|+. .+.|+|.-.+++.
T Consensus 77 ~--~---~d~~~~~~------~~~fD~v~~~~~l~~~~----d~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 77 R--T---GDVRDWKP------KPDTDVVVSNAALQWVP----EH-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred E--E---cChhhCCC------CCCceEEEEehhhhhCC----CH-HHHHHHHHHhCCCCcEEEEE
Confidence 2 2 12222211 12222344445678873 33 345554 5779998666554
No 11
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=84.58 E-value=3.4 Score=34.64 Aligned_cols=97 Identities=23% Similarity=0.391 Sum_probs=53.5
Q ss_pred EEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcccc
Q 011012 228 IVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETF 307 (495)
Q Consensus 228 IVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l 307 (495)
|+|+|.|.|..=..|.+.+ +.| |..++|||+. +...++.+.++. +..+++.+|..-. ..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~---~~~---~~~~~~gvD~------s~~~l~~~~~~~----~~~~~~~~~~~~D---~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---DAG---PSSRVIGVDI------SPEMLELAKKRF----SEDGPKVRFVQAD---ARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-------HHHHHHHHHHS----HHTTTTSEEEESC---TTCH
T ss_pred CEEeecCCcHHHHHHHHHh---hhc---ccceEEEEEC------CHHHHHHHHHhc----hhcCCceEEEECC---HhHC
Confidence 7899999998777777776 223 3589999973 344454443333 3356677774422 2222
Q ss_pred ccccccccCCceEEEee-cccCCccccCCCchHHHHHHHhhh-cCC
Q 011012 308 KASALKLVRGEALIINC-MLHLPHFSYRAPDSIASFLSGAKT-LNP 351 (495)
Q Consensus 308 ~~~~L~l~~gEaLaVN~-~~~Lh~L~~~~~~~~~~fL~~ir~-L~P 351 (495)
....+..=+|-| ...+||+. +..+..+|+.+.+ |+|
T Consensus 62 -----~~~~~~~D~v~~~~~~~~~~~---~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 62 -----PFSDGKFDLVVCSGLSLHHLS---PEELEALLRRIARLLRP 99 (101)
T ss_dssp -----HHHSSSEEEEEE-TTGGGGSS---HHHHHHHHHHHHHTEEE
T ss_pred -----cccCCCeeEEEEcCCccCCCC---HHHHHHHHHHHHHHhCC
Confidence 223333434444 45588873 4567788887744 444
No 12
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=83.69 E-value=15 Score=37.66 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=67.2
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDE 305 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e 305 (495)
..|||+|.|.|.-=..|++++.. ..++|+|+. +.+.|+.+.++|.+- --++++++ +..+ ..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--------~~~~~~iDi------S~~mL~~a~~~l~~~--~p~~~v~~--i~gD-~~ 125 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--------PARYVPIDI------SADALKESAAALAAD--YPQLEVHG--ICAD-FT 125 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--------CCeEEEEEC------CHHHHHHHHHHHHhh--CCCceEEE--EEEc-cc
Confidence 57999999999877778887732 267999974 456777777777641 12344443 3222 11
Q ss_pred cccccccc--ccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 306 TFKASALK--LVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 306 ~l~~~~L~--l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+. ..+. ...+..+++.+...++++. +.....||+.+ +.|+|.-..++.
T Consensus 126 ~~--~~~~~~~~~~~~~~~~~gs~~~~~~---~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 126 QP--LALPPEPAAGRRLGFFPGSTIGNFT---PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ch--hhhhcccccCCeEEEEecccccCCC---HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 11 0010 1123567777767788873 44567889888 568997655543
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.89 E-value=11 Score=35.99 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=63.0
Q ss_pred hhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc
Q 011012 211 TANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI 290 (495)
Q Consensus 211 tANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl 290 (495)
++...|++++.-.+.-+|+|+|-|.|..-. .||.+ | .++|||+. +...++ .+.+.++.-
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~--g-----~~V~~iD~------s~~~l~----~a~~~~~~~ 75 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA--G-----YDVRAWDH------NPASIA----SVLDMKARE 75 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC--C-----CeEEEEEC------CHHHHH----HHHHHHHHh
Confidence 466788888776556789999999997543 33444 2 36899974 222233 334455566
Q ss_pred CCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE
Q 011012 291 GQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV 354 (495)
Q Consensus 291 gvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv 354 (495)
|++..+...... ... +. ..=+.++. .+.+||+. ++.+..+++.+ +.|+|.-.
T Consensus 76 ~~~v~~~~~d~~---~~~---~~-~~fD~I~~--~~~~~~~~---~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 76 NLPLRTDAYDIN---AAA---LN-EDYDFIFS--TVVFMFLQ---AGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CCCceeEeccch---hcc---cc-CCCCEEEE--ecccccCC---HHHHHHHHHHHHHHhCCCcE
Confidence 777554432211 111 11 11233433 33467773 23566777776 66899864
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.50 E-value=3.8 Score=34.52 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=58.0
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
+|+|+|-+.|.. ...|+++. |..++|||+. +...++...++..+ ...+-..+|..-.+
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~~-----~~~~v~gvD~------s~~~~~~a~~~~~~--~~~~~~i~~~~~d~----- 61 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARLF-----PGARVVGVDI------SPEMLEIARERAAE--EGLSDRITFVQGDA----- 61 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHHH-----TTSEEEEEES------SHHHHHHHHHHHHH--TTTTTTEEEEESCC-----
T ss_pred EEEEEcCcCCHH----HHHHHhcC-----CCCEEEEEeC------CHHHHHHHHHHHHh--cCCCCCeEEEECcc-----
Confidence 679999998854 33344421 3577999974 44556666555533 22334566654221
Q ss_pred ccccccccc-CCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 307 FKASALKLV-RGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 307 l~~~~L~l~-~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
....... +=++++.+. +.+|++... ..+..+|+.+ +.|+|.-+++++
T Consensus 62 --~~~~~~~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 62 --EFDPDFLEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp --HGGTTTSSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --ccCcccCCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 0011111 123455554 456655322 4566778876 579998777664
No 15
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=80.37 E-value=14 Score=36.34 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=58.9
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
-+..|++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+. +...++.+.+++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~~~v~gvD~------s~~~i~~a~~~~-------- 75 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW-----PAARITGIDS------SPAMLAEARSRL-------- 75 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC-----CCCEEEEEEC------CHHHHHHHHHhC--------
Confidence 35566666655556789999999983 345666553 2468999974 222333322221
Q ss_pred CCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 292 QPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 292 vpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
-..+|... +.+++.+. .+=+.+ -|...||++. +....+-+..+.|+|.-.+++.
T Consensus 76 ~~~~~~~~---d~~~~~~~----~~fD~v--~~~~~l~~~~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 76 PDCQFVEA---DIASWQPP----QALDLI--FANASLQWLP----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCCeEEEC---chhccCCC----CCccEE--EEccChhhCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 12344332 22222111 011233 3455678873 3333344444778998777664
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=79.86 E-value=22 Score=35.25 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=59.4
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.+++.+...+-..|+|++.|-|--+.. |+.+-+ |.-+|||++. +..-|+...+|+.+.... ..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~----~~~~v~~vD~------s~~ML~~a~~k~~~~~~~---~i 100 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG----PNGKVVGVDI------SPGMLEVARKKLKREGLQ---NI 100 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-------EEEEEES-------HHHHHHHHHHHHHTT-----SE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC----CccEEEEecC------CHHHHHHHHHHHHhhCCC---Ce
Confidence 344555556667999999999964443 444432 3568999974 445666666666654332 44
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcE-EEEEe
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRL-VTLVE 358 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkv-vtlvE 358 (495)
+|..-. . ..|.+.++..=+|-|.|.||++. +....+=...|-|+|.- ++++|
T Consensus 101 ~~v~~d---a-----~~lp~~d~sfD~v~~~fglrn~~----d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 101 EFVQGD---A-----EDLPFPDNSFDAVTCSFGLRNFP----DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEE-B---T-----TB--S-TT-EEEEEEES-GGG-S----SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEcC---H-----HHhcCCCCceeEEEHHhhHHhhC----CHHHHHHHHHHHcCCCeEEEEee
Confidence 554322 2 23344456566888999999983 33333334457799964 34444
No 17
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.74 E-value=17 Score=36.89 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=72.4
Q ss_pred hhhhhhHHhHhhhhc----CCeeEEEEccccCcc-chHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHH
Q 011012 208 GHFTANQAILEAVAN----DRRVHIVDYDIMEGI-QWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRR 282 (495)
Q Consensus 208 ahftANqAILEA~~g----~~~VHIVDf~I~~G~-QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~r 282 (495)
+++++-+.||+.+.. -+--+|+|||-|-|. =|+. .+.+ + ...++|.|+. ...+.++|++
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~--~~~~~~~vd~-------s~~~~~l~~~ 76 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------P--SLKEYTCVDR-------SPEMLELAKR 76 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------c--CceeeeeecC-------CHHHHHHHHH
Confidence 466777777777753 355699999999883 3322 1221 1 2478999963 2345667777
Q ss_pred HHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEeecC
Q 011012 283 LVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEEET 361 (495)
Q Consensus 283 L~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ea 361 (495)
|.+-..... ...... .+......+.+.+.|++. +.|-.|. +..+..+++.+ ..++| ++|+||+..
T Consensus 77 l~~~~~~~~-~~~~~~-------~~~~~~~~~~~~DLvi~s--~~L~EL~---~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 77 LLRAGPNNR-NAEWRR-------VLYRDFLPFPPDDLVIAS--YVLNELP---SAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred HHhcccccc-cchhhh-------hhhcccccCCCCcEEEEe--hhhhcCC---chHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 765332111 011111 111122223233333333 2333342 25678888888 44555 778887542
Q ss_pred CCCCCCChHHHHHHHH
Q 011012 362 GPIGDGGFVSRFMDSL 377 (495)
Q Consensus 362 ~~n~~p~F~~RF~eaL 377 (495)
..+ ...+.+.++.|
T Consensus 143 -~~G-f~~i~~aR~~l 156 (274)
T PF09243_consen 143 -PAG-FRRIAEARDQL 156 (274)
T ss_pred -hHH-HHHHHHHHHHH
Confidence 222 44555555555
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=79.68 E-value=13 Score=37.58 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=59.3
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.+++++.--+.-+|+|+|-|.|. +...||.+ | .++|||+. +...++ .+.+.|+..|++
T Consensus 110 ~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~--g-----~~V~avD~------s~~ai~----~~~~~~~~~~l~ 168 (287)
T PRK12335 110 SEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL--G-----FDVTAVDI------NQQSLE----NLQEIAEKENLN 168 (287)
T ss_pred HHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC--C-----CEEEEEEC------CHHHHH----HHHHHHHHcCCc
Confidence 345555432222389999999987 33445554 2 47999974 222333 344566777887
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV 354 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv 354 (495)
+++....+. .. .+. ..=+.++.+ +.|||+. +..+..+|+.+ +.|+|.-+
T Consensus 169 v~~~~~D~~---~~---~~~-~~fD~I~~~--~vl~~l~---~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 169 IRTGLYDIN---SA---SIQ-EEYDFILST--VVLMFLN---RERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred eEEEEechh---cc---ccc-CCccEEEEc--chhhhCC---HHHHHHHHHHHHHhcCCCcE
Confidence 666543221 11 110 111344433 3567773 34567778776 66899755
No 19
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=77.81 E-value=14 Score=36.18 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=61.8
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..++++..=.+.-+|||+|-+.|. +..+|+.+. |+||+|..+.|. +-+.++. .=.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~-----P~l~~~v~Dlp~--------v~~~~~~--------~~r 144 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY-----PNLRATVFDLPE--------VIEQAKE--------ADR 144 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS-----TTSEEEEEE-HH--------HHCCHHH--------TTT
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC-----CCCcceeeccHh--------hhhcccc--------ccc
Confidence 445566554555689999999993 445555553 689999998652 2222222 334
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCc---EEEEEeecCCCCC
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPR---LVTLVEEETGPIG 365 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pk---vvtlvE~ea~~n~ 365 (495)
.+|.+-.. . ..+-. .+++.+ ..-||+.+ +.....+|+.+ +.|+|. .++|+|.=.+...
T Consensus 145 v~~~~gd~--f-----~~~P~--~D~~~l--~~vLh~~~---d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 145 VEFVPGDF--F-----DPLPV--ADVYLL--RHVLHDWS---DEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp EEEEES-T--T-----TCCSS--ESEEEE--ESSGGGS----HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred cccccccH--H-----hhhcc--ccceee--ehhhhhcc---hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 55544211 1 11111 234444 34567764 34566777776 568876 6777776554443
No 20
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=76.85 E-value=26 Score=33.90 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=55.6
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
.|+|+|.|.|..-..|. .+- |..++|||+. +...++.+.+++. ++ ++... +..+
T Consensus 46 ~VLDiGCG~G~~~~~L~----~~~-----~~~~v~giDi------S~~~l~~A~~~~~------~~--~~~~~---d~~~ 99 (204)
T TIGR03587 46 SILELGANIGMNLAALK----RLL-----PFKHIYGVEI------NEYAVEKAKAYLP------NI--NIIQG---SLFD 99 (204)
T ss_pred cEEEEecCCCHHHHHHH----HhC-----CCCeEEEEEC------CHHHHHHHHhhCC------CC--cEEEe---eccC
Confidence 58999999996554443 331 2357999963 3334444333221 22 22221 1111
Q ss_pred cccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEeecC
Q 011012 307 FKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEET 361 (495)
Q Consensus 307 l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ea 361 (495)
+ ..++..=+|-|...|||+. |..+..+++.+.+..=+.++++|..+
T Consensus 100 --~----~~~~sfD~V~~~~vL~hl~---p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 --P----FKDNFFDLVLTKGVLIHIN---PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred --C----CCCCCEEEEEECChhhhCC---HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1 1122222333555678872 45678888888887778888888653
No 21
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=76.57 E-value=36 Score=35.59 Aligned_cols=127 Identities=17% Similarity=0.081 Sum_probs=76.1
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP- 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp- 293 (495)
.|.+++. ....|||||-|.|..=..||++|..+ +. ..+-.+|+. +.+.|+++.++|. .-..|
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~----~~~Y~plDI------S~~~L~~a~~~L~----~~~~p~ 131 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK----SVDYYALDV------SRSELQRTLAELP----LGNFSH 131 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC----CceEEEEEC------CHHHHHHHHHhhh----hccCCC
Confidence 3444443 23479999999999999999999743 22 367789964 5568888888886 12345
Q ss_pred eEEeeeecCCcccccc-ccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh--cCCcEEEEEeecC
Q 011012 294 FSFHQCRLDSDETFKA-SALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT--LNPRLVTLVEEET 361 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~-~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~--L~PkvvtlvE~ea 361 (495)
.+++++..+-...+.. ..-.....-.++.-.--.+.++ .|.....||+.+++ |+|.-..++--|.
T Consensus 132 l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf---~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 132 VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF---SRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC---CHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 7777775432111110 0000111223333333344444 35567899999987 8997555554453
No 22
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=75.20 E-value=20 Score=37.58 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=64.2
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc---CCCeEEee--
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI---GQPFSFHQ-- 298 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl---gvpFeF~~-- 298 (495)
...+|+|++.|.|.== .+=... ++ =++.||+. +...++++.+|..+.-+.. ...+.|..
T Consensus 62 ~~~~VLDl~CGkGGDL---~Kw~~~---~i----~~~vg~Di------s~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f 125 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDL---QKWQKA---KI----KHYVGIDI------SEESIEEARERYKQLKKRNNSKQYRFDFIAEF 125 (331)
T ss_dssp TT-EEEEET-TTTTTH---HHHHHT---T-----SEEEEEES-------HHHHHHHHHHHHHHHTSTT-HTSEECCEEEE
T ss_pred CCCeEEEecCCCchhH---HHHHhc---CC----CEEEEEeC------CHHHHHHHHHHHHHhccccccccccccchhhe
Confidence 6789999999998521 111111 23 34678863 4678999999986655322 22333332
Q ss_pred eecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEE
Q 011012 299 CRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTL 356 (495)
Q Consensus 299 v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtl 356 (495)
+..+....--...+.-..+..=+|+|+|.||+. ..+......||+.| +.|+|.-+.+
T Consensus 126 ~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~-Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 126 IAADCFSESLREKLPPRSRKFDVVSCQFALHYA-FESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp EESTTCCSHHHCTSSSTTS-EEEEEEES-GGGG-GSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred eccccccchhhhhccccCCCcceeehHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 333322110011122122456699999999998 44455667788887 6699985444
No 23
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=74.18 E-value=53 Score=35.58 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|++.+.....-+|+|+|-|.|.-- ..|+.+ + . ++|||+. +...++.. +++ ....-.
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~--~---~--~v~giD~------s~~~l~~a-~~~----~~~~~~ 84 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKK--A---G--QVIALDF------IESVIKKN-ESI----NGHYKN 84 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhh--C---C--EEEEEeC------CHHHHHHH-HHH----hccCCc
Confidence 45556665444448999999999544 445544 2 1 5899963 22333321 111 111112
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhh-hcCCcEEEEEeecCCCCC-------
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAK-TLNPRLVTLVEEETGPIG------- 365 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir-~L~PkvvtlvE~ea~~n~------- 365 (495)
.+|....+. + ..+...++..=+|-|.+.|||+.. ..+..+|+.++ -|+|.-+++....+.++.
T Consensus 85 i~~~~~d~~---~---~~~~~~~~~fD~I~~~~~l~~l~~---~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~ 155 (475)
T PLN02336 85 VKFMCADVT---S---PDLNISDGSVDLIFSNWLLMYLSD---KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKN 155 (475)
T ss_pred eEEEEeccc---c---cccCCCCCCEEEEehhhhHHhCCH---HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccC
Confidence 444332211 1 011222333335555667899832 34567777764 489997666543322221
Q ss_pred CCChHHHHHHHHHHHHHHHhh
Q 011012 366 DGGFVSRFMDSLHHYSAVYDS 386 (495)
Q Consensus 366 ~p~F~~RF~eaL~yYsalFDS 386 (495)
+|++... ..+|..+|..
T Consensus 156 ~~~~~~~----~~~~~~~f~~ 172 (475)
T PLN02336 156 NPTHYRE----PRFYTKVFKE 172 (475)
T ss_pred CCCeecC----hHHHHHHHHH
Confidence 1333222 4577777765
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=72.55 E-value=32 Score=32.84 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=58.6
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
+++.+++.+.....-.|+|+|.|.|. +...||++ | .+||||+. +...++.. .+.++..|
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g-----~~V~gvD~------S~~~i~~a----~~~~~~~~ 76 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G-----FDVTAWDK------NPMSIANL----ERIKAAEN 76 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C-----CEEEEEeC------CHHHHHHH----HHHHHHcC
Confidence 34455555554445679999999987 33445554 2 37999963 22333332 22334445
Q ss_pred CC-eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE
Q 011012 292 QP-FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT 355 (495)
Q Consensus 292 vp-FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt 355 (495)
++ .++... +++++. +. ..=+.|+.+ +.+|++. +..+..+++.+ +.|+|.-++
T Consensus 77 ~~~v~~~~~---d~~~~~---~~-~~fD~I~~~--~~~~~~~---~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 77 LDNLHTAVV---DLNNLT---FD-GEYDFILST--VVLMFLE---AKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CCcceEEec---ChhhCC---cC-CCcCEEEEe--cchhhCC---HHHHHHHHHHHHHHcCCCcEE
Confidence 54 333321 222221 11 112344433 4467762 34566777766 668998754
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=71.13 E-value=25 Score=34.79 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=58.2
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP- 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp- 293 (495)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|+|+. +...++...+ .++..|+.
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g-----~~v~~vD~------s~~~l~~a~~----~~~~~g~~~ 93 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G-----HQVILCDL------SAEMIQRAKQ----AAEAKGVSD 93 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C-----CEEEEEEC------CHHHHHHHHH----HHHhcCCcc
Confidence 4666665 344699999999994 45666665 2 36899963 2334444333 34445553
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
.+|... +.+++.+ ..++..=+|-|...|||+. ++...+-...+-|+|.-.+++
T Consensus 94 ~v~~~~~---d~~~l~~----~~~~~fD~V~~~~vl~~~~----~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 94 NMQFIHC---AAQDIAQ----HLETPVDLILFHAVLEWVA----DPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred ceEEEEc---CHHHHhh----hcCCCCCEEEehhHHHhhC----CHHHHHHHHHHHcCCCeEEEE
Confidence 444332 2222211 1122222333556678873 233333344577999866654
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=69.16 E-value=1.1e+02 Score=29.15 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=25.3
Q ss_pred HhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 217 LEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 217 LEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
++.+.-....+|+|+|-+.|. +...++.+- | +..++|+++.
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~~--~--~~~~v~~~D~ 84 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKAV--G--KTGEVVGLDF 84 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHHc--C--CCCeEEEEeC
Confidence 333333345789999999985 333333332 3 4688999964
No 27
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=69.03 E-value=37 Score=34.16 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=30.1
Q ss_pred cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 222 NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 222 g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
..+.++|.|.|-+.|--.-+|--.|++.-...+.+..+|+|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Di 140 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDI 140 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEEC
Confidence 34569999999999988776655555432111114689999974
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=68.66 E-value=1.1e+02 Score=33.01 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=62.2
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+. + .++|||+. +...++.+.++ +...+.
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-~-----~~v~gvDi------S~~~l~~A~~~----~~~~~~ 314 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENF-D-----VHVVGIDL------SVNMISFALER----AIGRKC 314 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhc-C-----CEEEEEEC------CHHHHHHHHHH----hhcCCC
Confidence 3456666543445689999999995 345566654 2 47999974 23344433332 233444
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
..+|.... +... .+.++..=+|-|...++|+. ++ ..+|+.+ +.|+|.-.+++.
T Consensus 315 ~v~~~~~d---~~~~-----~~~~~~fD~I~s~~~l~h~~----d~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 315 SVEFEVAD---CTKK-----TYPDNSFDVIYSRDTILHIQ----DK-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred ceEEEEcC---cccC-----CCCCCCEEEEEECCcccccC----CH-HHHHHHHHHHcCCCeEEEEE
Confidence 56665432 1111 11123233455566678873 33 3455554 779998766554
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=63.73 E-value=14 Score=37.24 Aligned_cols=100 Identities=21% Similarity=0.365 Sum_probs=63.6
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
...-|.|+|-|-| .|-+.||... ..+|||+.. ...++. =...|.+-|+..+|....++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-------a~VtgiD~s------e~~I~~----Ak~ha~e~gv~i~y~~~~~e- 116 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-------ASVTGIDAS------EKPIEV----AKLHALESGVNIDYRQATVE- 116 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-------CeeEEecCC------hHHHHH----HHHhhhhccccccchhhhHH-
Confidence 4567899999888 7888888763 578999632 112222 13356677888888765433
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEEEE
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~Pkvvtlv 357 (495)
++... -+-.=||-||=-|+|+ |++ +.|++. .+-++|.-+++.
T Consensus 117 --dl~~~-----~~~FDvV~cmEVlEHv----~dp-~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 117 --DLASA-----GGQFDVVTCMEVLEHV----PDP-ESFLRACAKLVKPGGILFL 159 (243)
T ss_pred --HHHhc-----CCCccEEEEhhHHHcc----CCH-HHHHHHHHHHcCCCcEEEE
Confidence 22221 1334478888889998 333 346665 477899866654
No 30
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=63.67 E-value=1.4e+02 Score=28.55 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~~~ 304 (495)
-.|+|+|-|.|.. ++ .++.+. |..++|+|+. +...++. ..+.++..|++ ++|.... .
T Consensus 47 ~~VLDiGcGtG~~--al--~la~~~-----~~~~V~giD~------s~~~l~~----A~~~~~~~~l~~i~~~~~d---~ 104 (187)
T PRK00107 47 ERVLDVGSGAGFP--GI--PLAIAR-----PELKVTLVDS------LGKKIAF----LREVAAELGLKNVTVVHGR---A 104 (187)
T ss_pred CeEEEEcCCCCHH--HH--HHHHHC-----CCCeEEEEeC------cHHHHHH----HHHHHHHcCCCCEEEEecc---H
Confidence 4689999988843 22 222221 3468999963 2223333 34455666764 6665432 2
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++.. -.+-+.++.|+. ..++.+++.+ +.|+|.-.+++.
T Consensus 105 ~~~~~----~~~fDlV~~~~~-----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 105 EEFGQ----EEKFDVVTSRAV-----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred hhCCC----CCCccEEEEccc-----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 22221 123456666541 1345677765 789999776664
No 31
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=63.64 E-value=41 Score=30.31 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=26.2
Q ss_pred hcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 221 ANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 221 ~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
...+..+|||+|-|.|.==-.|-..|... . |.++|++|+.
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~--~---~~~~v~~iD~ 61 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS--S---PNLRVLGIDC 61 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc--C---CCCeEEEEEC
Confidence 34678999999999985322333333222 1 4699999974
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=62.34 E-value=73 Score=30.16 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=50.3
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~~~ 304 (495)
-+|+|+|-|.|.- ++ .|+.+ + |..++|||+. +...++. +.+.++..|++ ++|.... .
T Consensus 44 ~~vLDiGcGtG~~--s~--~la~~--~---~~~~V~~iD~------s~~~~~~----a~~~~~~~~~~~i~~i~~d---~ 101 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GI--PLAIA--R---PELKLTLLES------NHKKVAF----LREVKAELGLNNVEIVNGR---A 101 (181)
T ss_pred CeEEEecCCCCcc--HH--HHHHH--C---CCCeEEEEeC------cHHHHHH----HHHHHHHhCCCCeEEEecc---h
Confidence 4899999999842 21 11222 1 3467999974 2222222 33445556764 6655432 3
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++.. ..+=+.++.|+ ++++ ..+++.+ +-|+|.-++++.
T Consensus 102 ~~~~~----~~~fD~I~s~~---~~~~--------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 102 EDFQH----EEQFDVITSRA---LASL--------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhccc----cCCccEEEehh---hhCH--------HHHHHHHHHhcCCCCEEEEE
Confidence 33311 11224555554 4433 3455554 458999777765
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=62.23 E-value=22 Score=28.29 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=48.8
Q ss_pred EEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccccc
Q 011012 229 VDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFK 308 (495)
Q Consensus 229 VDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~ 308 (495)
+|+|.|.|.....|.+. + -.++|+++. +...++.. .+..+..+++ |.. .+.
T Consensus 1 LdiG~G~G~~~~~l~~~------~----~~~v~~~D~------~~~~~~~~----~~~~~~~~~~--~~~---~d~---- 51 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR------G----GASVTGIDI------SEEMLEQA----RKRLKNEGVS--FRQ---GDA---- 51 (95)
T ss_dssp EEET-TTSHHHHHHHHT------T----TCEEEEEES-------HHHHHHH----HHHTTTSTEE--EEE---SBT----
T ss_pred CEecCcCCHHHHHHHhc------c----CCEEEEEeC------CHHHHHHH----HhcccccCch--hee---ehH----
Confidence 57888888766555554 2 267899963 22333332 2223333333 322 222
Q ss_pred cccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEE
Q 011012 309 ASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTL 356 (495)
Q Consensus 309 ~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtl 356 (495)
..+.+.++-+=+|-|...+||+ .....+|+.+ |-|+|.-+.+
T Consensus 52 -~~l~~~~~sfD~v~~~~~~~~~-----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 52 -EDLPFPDNSFDVVFSNSVLHHL-----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -TSSSS-TT-EEEEEEESHGGGS-----SHHHHHHHHHHHHEEEEEEEE
T ss_pred -HhCccccccccccccccceeec-----cCHHHHHHHHHHHcCcCeEEe
Confidence 2233444555566777778888 2345566555 6688876554
No 34
>PRK05785 hypothetical protein; Provisional
Probab=59.23 E-value=1.3e+02 Score=29.43 Aligned_cols=91 Identities=10% Similarity=0.007 Sum_probs=47.6
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-.|+|+|.|-|.. ...|+.+. + .+||||+. +..-++.. +.- .+ + +. .+.
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~-~-----~~v~gvD~------S~~Ml~~a--------~~~-~~--~--~~-~d~ 101 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVF-K-----YYVVALDY------AENMLKMN--------LVA-DD--K--VV-GSF 101 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhc-C-----CEEEEECC------CHHHHHHH--------Hhc-cc--e--EE-ech
Confidence 34799999999944 34455443 1 36999973 22333332 211 11 1 11 122
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT 355 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt 355 (495)
++ +...++..=+|-|.+.|||+. + .+.+|+.+ |-|+|.+++
T Consensus 102 ~~-----lp~~d~sfD~v~~~~~l~~~~----d-~~~~l~e~~RvLkp~~~i 143 (226)
T PRK05785 102 EA-----LPFRDKSFDVVMSSFALHASD----N-IEKVIAEFTRVSRKQVGF 143 (226)
T ss_pred hh-----CCCCCCCEEEEEecChhhccC----C-HHHHHHHHHHHhcCceEE
Confidence 22 223344444566667788873 2 34556655 567896544
No 35
>PLN02244 tocopherol O-methyltransferase
Probab=58.68 E-value=94 Score=32.43 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=53.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--CeEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--PFSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--pFeF~~v~~~ 302 (495)
.-+|+|+|.|.|. +...|+.+.+ .++|||+. +...++ +..+.++..|+ ..+|....
T Consensus 119 ~~~VLDiGCG~G~----~~~~La~~~g------~~v~gvD~------s~~~i~----~a~~~~~~~g~~~~v~~~~~D-- 176 (340)
T PLN02244 119 PKRIVDVGCGIGG----SSRYLARKYG------ANVKGITL------SPVQAA----RANALAAAQGLSDKVSFQVAD-- 176 (340)
T ss_pred CCeEEEecCCCCH----HHHHHHHhcC------CEEEEEEC------CHHHHH----HHHHHHHhcCCCCceEEEEcC--
Confidence 3579999999885 4556666542 37899963 222222 23334455555 35665322
Q ss_pred CccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEE
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVT 355 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~Pkvvt 355 (495)
..++ ...++..=+|-|...+||+. + ...+|+. .|-|+|.-.+
T Consensus 177 -~~~~-----~~~~~~FD~V~s~~~~~h~~----d-~~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 177 -ALNQ-----PFEDGQFDLVWSMESGEHMP----D-KRKFVQELARVAAPGGRI 219 (340)
T ss_pred -cccC-----CCCCCCccEEEECCchhccC----C-HHHHHHHHHHHcCCCcEE
Confidence 2121 12233333455667788883 2 3455554 5779997433
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=57.78 E-value=78 Score=30.35 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=62.6
Q ss_pred hhhhhhhHHhHhhhhc--CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHH
Q 011012 207 FGHFTANQAILEAVAN--DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLV 284 (495)
Q Consensus 207 fahftANqAILEA~~g--~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~ 284 (495)
.++-...+.+++.+.. .+.-+|+|+|-|.|. +...|+.+ + .+||||+. +...+....+++
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~--~-----~~v~gvD~------s~~~i~~a~~~~- 97 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR--G-----AIVKAVDI------SEQMVQMARNRA- 97 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC--C-----CEEEEEEC------CHHHHHHHHHHH-
Confidence 3455666777777762 345789999999885 55566654 1 37899963 233444443443
Q ss_pred HHHHHcCC--CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh-cCCcEEEEE
Q 011012 285 AFAASIGQ--PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT-LNPRLVTLV 357 (495)
Q Consensus 285 ~fA~slgv--pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~-L~Pkvvtlv 357 (495)
...++ .++|.... ++.+. ..=++++ +...++|+. +.....+++.+.+ ++|.+++..
T Consensus 98 ---~~~~~~~~i~~~~~d---~~~~~------~~fD~ii--~~~~l~~~~---~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 98 ---QGRDVAGNVEFEVND---LLSLC------GEFDIVV--CMDVLIHYP---ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---HhcCCCCceEEEECC---hhhCC------CCcCEEE--EhhHHHhCC---HHHHHHHHHHHHHHhCCCEEEEE
Confidence 22343 45565422 22222 1123332 233456652 2335566766654 566665543
No 37
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=56.63 E-value=2e+02 Score=28.75 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=59.6
Q ss_pred hhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHH
Q 011012 210 FTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAAS 289 (495)
Q Consensus 210 ftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~s 289 (495)
.-+.+.|++.+.-...-+|+|+|-+.|.-- ..|+.+. ..++|||+. +...++...++...
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~------~~~v~giD~------s~~~~~~a~~~~~~---- 97 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY------GAHVHGVDI------CEKMVNIAKLRNSD---- 97 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc------CCEEEEEEC------CHHHHHHHHHHcCc----
Confidence 345666777775556678999999998732 3444432 247999963 22333433333221
Q ss_pred cCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 290 IGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 290 lgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.-..+|.... ..+ +...++..=+|-+...++|+. ......+|+.+ +.|+|.-.+++
T Consensus 98 -~~~i~~~~~D---~~~-----~~~~~~~FD~V~s~~~l~h~~---~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 98 -KNKIEFEAND---ILK-----KDFPENTFDMIYSRDAILHLS---YADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred -CCceEEEECC---ccc-----CCCCCCCeEEEEEhhhHHhCC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 1234443321 111 111122111222334456663 12456777766 66999855554
No 38
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.95 E-value=20 Score=26.15 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=26.7
Q ss_pred ceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEee
Q 011012 318 EALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEE 359 (495)
Q Consensus 318 EaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ 359 (495)
|.+-|||....=++|.. .....+++.|+.++|+-+++|--
T Consensus 1 e~i~v~a~v~~~~fSgH--ad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 1 EMIPVRARVEQIDFSGH--ADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CEEE--SEEEESGCSSS---BHHHHHHHHHHHCSSEEEEESS
T ss_pred CEEEeEEEEEEEeecCC--CCHHHHHHHHHhcCCCEEEEecC
Confidence 34567766533336544 46789999999999999998843
No 39
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=51.51 E-value=93 Score=29.30 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=24.3
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEec
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALS 264 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~ 264 (495)
.|.+.+... -+|+|+|-|.|. +++.|+.+.+ .+++||+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~------~~~~giD 43 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ------VRGYGIE 43 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC------CcEEEEe
Confidence 344444322 379999999995 5667766531 3468996
No 40
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=51.02 E-value=2.1e+02 Score=30.11 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=64.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+++.+.....=+|+|+|-|.|. +-..|+.+. |..++|+|+. +...++.+.+++. ..++.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~-----p~~~v~~vDi------s~~Al~~A~~nl~----~n~l~ 246 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS-----PKIRLTLSDV------SAAALESSRATLA----ANGLE 246 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC-----CCCEEEEEEC------CHHHHHHHHHHHH----HcCCC
Confidence 455666654333379999999997 445555552 4678999964 3445555554443 34566
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.++... +-.+.+ -.+=+.++.|-.| |............|++.+ +.|+|.-..+.
T Consensus 247 ~~~~~~--D~~~~~------~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 247 GEVFAS--NVFSDI------KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred CEEEEc--cccccc------CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 555432 211111 1123577777654 443222223456777765 56999754433
No 41
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=49.68 E-value=1.3e+02 Score=31.47 Aligned_cols=103 Identities=20% Similarity=0.216 Sum_probs=56.6
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHH-Hc-CCCeEEeeeec
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAA-SI-GQPFSFHQCRL 301 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~-sl-gvpFeF~~v~~ 301 (495)
+...|+|+|.|.|. +...|+.+ | .+||||+. +...++...++..+.-. .. +...+|...
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~--g-----~~V~gvD~------S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~-- 204 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE--G-----AIVSASDI------SAAMVAEAERRAKEALAALPPEVLPKFEAN-- 204 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC--C-----CEEEEEEC------CHHHHHHHHHHHHhcccccccccceEEEEc--
Confidence 45689999999886 44555554 2 37999964 34455555444432100 01 234455432
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
++++++ +..=+|-|...|+|+.. .....+++.++.+.|..+++.
T Consensus 205 -Dl~~l~--------~~fD~Vv~~~vL~H~p~---~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 205 -DLESLS--------GKYDTVTCLDVLIHYPQ---DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred -chhhcC--------CCcCEEEEcCEEEecCH---HHHHHHHHHHHhhcCCEEEEE
Confidence 222221 11113335555677632 345678888888888877764
No 42
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=48.12 E-value=2.1e+02 Score=27.71 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=65.8
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|++|+.--+.-.++|+|-|.|.= ---||++ | +.+|+++. +... -++|.+.|+.-+++
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~--G-----~~VtAvD~------s~~a----l~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ--G-----FDVTAVDI------SPVA----LEKLQRLAEEEGLD 78 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT--T------EEEEEES------SHHH----HHHHHHHHHHTT-T
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC--C-----CeEEEEEC------CHHH----HHHHHHHHhhcCce
Confidence 3466776655667889999998853 1235554 2 67999973 2222 34578899999999
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhh-hcCCcEEEEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAK-TLNPRLVTLV 357 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir-~L~Pkvvtlv 357 (495)
++.....++ +.. + +++.=+|.+...+++|. +..+..+++.++ .++|--+.+.
T Consensus 79 i~~~~~Dl~---~~~---~---~~~yD~I~st~v~~fL~---~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 79 IRTRVADLN---DFD---F---PEEYDFIVSTVVFMFLQ---RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEEEE-BGC---CBS-------TTTEEEEEEESSGGGS----GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred eEEEEecch---hcc---c---cCCcCEEEEEEEeccCC---HHHHHHHHHHHHhhcCCcEEEEE
Confidence 777654322 222 2 23333555656677773 356788888875 4899754443
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=48.04 E-value=2.1e+02 Score=29.66 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=53.2
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeE
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFS 295 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFe 295 (495)
|+..+..-+--+|+|+|.|.|.. +..++.+ |+ . +++||+.. ...+.+. +...+++. ...+.+
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~---~-~V~GiD~S------~~~l~q~-~a~~~~~~-~~~~i~ 175 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GA---K-LVVGIDPS------QLFLCQF-EAVRKLLG-NDQRAH 175 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CC---C-EEEEEcCC------HHHHHHH-HHHHHhcC-CCCCeE
Confidence 34444322223799999998843 3345554 44 2 49999731 1122110 11112221 123455
Q ss_pred EeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 296 FHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 296 F~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
|.... .+++.. ++-.=+|-|+..|||+ .++...+-+..+.|+|.-.++.+
T Consensus 176 ~~~~d---~e~lp~------~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 176 LLPLG---IEQLPA------LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEeCC---HHHCCC------cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 55432 223321 1111133345567886 23444444445779998666554
No 44
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=47.66 E-value=56 Score=31.71 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=44.3
Q ss_pred eeEE-EEccc---cCccchH---HHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc----CCC
Q 011012 225 RVHI-VDYDI---MEGIQWA---SLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI----GQP 293 (495)
Q Consensus 225 ~VHI-VDf~I---~~G~QWp---sLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl----gvp 293 (495)
+||| ||-|+ -+|+.+. .+++.+.. - |.|+|.||-...+...+.+...+.-+++.++++.+ |++
T Consensus 118 ~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~--~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 191 (222)
T cd00635 118 DVLVQVNIGGEESKSGVAPEELEELLEEIAA----L--PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVN 191 (222)
T ss_pred cEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----C--CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6898 88884 4788654 44444433 2 57999999765443344456666677777777776 466
Q ss_pred eEEeee
Q 011012 294 FSFHQC 299 (495)
Q Consensus 294 FeF~~v 299 (495)
+++-.+
T Consensus 192 ~~~is~ 197 (222)
T cd00635 192 LKELSM 197 (222)
T ss_pred CCEEEC
Confidence 666544
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=47.15 E-value=1.1e+02 Score=28.82 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=55.4
Q ss_pred hHHhHhhhhc---CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHH
Q 011012 213 NQAILEAVAN---DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAAS 289 (495)
Q Consensus 213 NqAILEA~~g---~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~s 289 (495)
.+.+++.+.. .+..+|+|+|-|.|.- ...|+.+ + |..++|+|+. +...++...+++.
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~--~---~~~~~~~~D~------~~~~~~~~~~~~~----- 79 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKR--F---PQAEFIALDI------SAGMLAQAKTKLS----- 79 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHh--C---CCCcEEEEeC------hHHHHHHHHHhcC-----
Confidence 3344444443 2346899999999963 3344444 2 3567999963 2233333333322
Q ss_pred cCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 290 IGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 290 lgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
-.++|.. .+.+++. ..++..=+|-+...|||+. + ...+|+.+ +.|+|.-+++..
T Consensus 80 --~~~~~~~---~d~~~~~-----~~~~~fD~vi~~~~l~~~~----~-~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 80 --ENVQFIC---GDAEKLP-----LEDSSFDLIVSNLALQWCD----D-LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --CCCeEEe---cchhhCC-----CCCCceeEEEEhhhhhhcc----C-HHHHHHHHHHHcCCCcEEEEE
Confidence 1233322 2222221 1122122333445677762 2 34566666 568998666553
No 46
>PRK08317 hypothetical protein; Provisional
Probab=46.83 E-value=2.5e+02 Score=26.33 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=26.7
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+++.+.-...-+|+|+|.|.|. | ...++.+- + |.-++|+|+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~---~~~~a~~~-~---~~~~v~~~d~ 52 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-D---ARELARRV-G---PEGRVVGIDR 52 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-H---HHHHHHhc-C---CCcEEEEEeC
Confidence 4566555556689999998874 3 33444433 2 3568999963
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=44.52 E-value=2.1e+02 Score=27.37 Aligned_cols=111 Identities=10% Similarity=0.044 Sum_probs=54.0
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~ 302 (495)
..-.|+|+|-|.|.-...|. .+. |.-++|||+. +...++.+.++ ++..++ .++|...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la----~~~-----p~~~v~gVD~------s~~~i~~a~~~----~~~~~~~~v~~~~~--- 97 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMA----KAN-----PDINFIGIEV------HEPGVGKALKK----IEEEGLTNLRLLCG--- 97 (202)
T ss_pred CCCeEEEEccCCCHHHHHHH----HHC-----CCccEEEEEe------chHHHHHHHHH----HHHcCCCCEEEEec---
Confidence 45679999999997655543 332 3568999974 23334433333 333454 3555432
Q ss_pred Cc-cccccccccccCCceEEEeecccCCcccc-CCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SD-ETFKASALKLVRGEALIINCMLHLPHFSY-RAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~-e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~-~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+. +.+.. .+.-..=+.+++|.....++... ........||+.+ +-|+|.-+++.
T Consensus 98 d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 98 DAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred CHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 22 22210 01111113555554332211100 0011246777776 57999755544
No 48
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=44.07 E-value=1.3e+02 Score=26.43 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=50.8
Q ss_pred cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeec
Q 011012 222 NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRL 301 (495)
Q Consensus 222 g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~ 301 (495)
..+.-.|+|+|-|.| . +.+.|+.+ | . ++||++. +...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~---~--~~~g~D~------~~~~~~~-----------~~~~~~~~~~~- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--G---F--EVTGVDI------SPQMIEK-----------RNVVFDNFDAQ- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--T---S--EEEEEES------SHHHHHH-----------TTSEEEEEECH-
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--C---C--EEEEEEC------CHHHHhh-----------hhhhhhhhhhh-
Confidence 355679999999999 3 45555554 2 3 8999974 2222222 22222211100
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.....++-.=+|-|...|||+. + ...+|+.| +-|+|.-++++
T Consensus 71 ---------~~~~~~~~fD~i~~~~~l~~~~----d-~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 71 ---------DPPFPDGSFDLIICNDVLEHLP----D-PEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp ---------THHCHSSSEEEEEEESSGGGSS----H-HHHHHHHHHHCEEEEEEEEE
T ss_pred ---------hhhccccchhhHhhHHHHhhcc----c-HHHHHHHHHHhcCCCCEEEE
Confidence 1111233344555667899984 2 45677766 55888644444
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=43.35 E-value=2.5e+02 Score=27.40 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=27.7
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
.-+.+++.+...+.-+|+|+|.|.|. +.+.|+.+ | -++|+|+.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~~~D~ 72 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER--G-----SQVTALDL 72 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc--C-----CeEEEEEC
Confidence 34445566654444569999999984 55666653 2 36899963
No 50
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=42.73 E-value=31 Score=35.01 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=20.2
Q ss_pred hcCCeeEEEEccccCccchHHHHHHHhcCCCCC
Q 011012 221 ANDRRVHIVDYDIMEGIQWASLMQALVSRKDGP 253 (495)
Q Consensus 221 ~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gp 253 (495)
.|.+.|||||+ +.+ |. .+|+.+++..+.|
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~~~ 78 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYPGG 78 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCCCC
Confidence 48899999999 445 65 5666666654443
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=42.42 E-value=1.7e+02 Score=31.35 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=63.1
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+|+.+.....=.|+|+|.|.|. +--.|+.+. |..+||+|+. +...++.+.+++.+....-.-.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~-----P~~~V~~vD~------S~~Av~~A~~N~~~n~~~~~~~ 282 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN-----PQAKVVFVDE------SPMAVASSRLNVETNMPEALDR 282 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC-----CCCEEEEEEC------CHHHHHHHHHHHHHcCcccCce
Confidence 445565543322379999999997 344555553 4689999974 3445555555543331110113
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
++|.. .+-.+.+... +=+.|+.|--|+..+- -...-...+++.+ +.|+|.-.+.++
T Consensus 283 v~~~~--~D~l~~~~~~-----~fDlIlsNPPfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 283 CEFMI--NNALSGVEPF-----RFNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEE--ccccccCCCC-----CEEEEEECcCcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 45432 2222222111 1257777766654332 1112234555544 678998655554
No 52
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=41.94 E-value=2.2e+02 Score=30.34 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=54.6
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.|++.+.-...=+|+|+|.|.|. +...++.+.+ .++|||+. +...++.+.++. + ++.+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g------~~V~giDl------S~~~l~~A~~~~----~--~l~v 215 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG------VSVVGVTI------SAEQQKLAQERC----A--GLPV 215 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC------CEEEEEeC------CHHHHHHHHHHh----c--cCeE
Confidence 44454433334489999987764 4455565532 47999963 333444443333 2 3444
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+|... +..++ . ..=+.|+ +...++|+.. .....+++.+ +-|+|.-.+++
T Consensus 216 ~~~~~---D~~~l-----~-~~fD~Iv--s~~~~ehvg~---~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 216 EIRLQ---DYRDL-----N-GQFDRIV--SVGMFEHVGP---KNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EEEEC---chhhc-----C-CCCCEEE--EeCchhhCCh---HHHHHHHHHHHHHcCCCcEEEE
Confidence 44321 22222 1 0112333 2334577632 2345667666 56899866555
No 53
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=41.68 E-value=37 Score=34.59 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred hcCCeeEEEEccccCccchHHHHHHHhc
Q 011012 221 ANDRRVHIVDYDIMEGIQWASLMQALVS 248 (495)
Q Consensus 221 ~g~~~VHIVDf~I~~G~QWpsLiqaLA~ 248 (495)
.|.+.+||||+|-+.+.+ -.+|+++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 478999999999877777 556777777
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=40.95 E-value=2.5e+02 Score=29.24 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=25.4
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+|++.+...+-=+|+|+|.|.|. ++..++.+ |+ . +++||++
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~---~-~v~GiDp 152 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA---K-SLVGIDP 152 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC---C-EEEEEcC
Confidence 35554433333489999999986 34445543 44 3 6899974
No 55
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=39.16 E-value=2.9e+02 Score=26.56 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=31.8
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEe
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFH 297 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~ 297 (495)
..+|+|+|.|.| .+...++.+. |..++|||+. +...++.+ .+.++..|++ .+|.
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~-----~~~~v~~iD~------~~~~~~~a----~~~~~~~~~~~~~~~ 142 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER-----PDARVTAVDI------SPEALAVA----RKNAARLGLDNVTFL 142 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC-----CCCEEEEEEC------CHHHHHHH----HHHHHHcCCCeEEEE
Confidence 458999999988 3444455432 3568999963 22333333 3344556665 5554
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=36.60 E-value=3.8e+02 Score=25.42 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=49.4
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--CeEEeeeec
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--PFSFHQCRL 301 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--pFeF~~v~~ 301 (495)
..-.|+|+|.|.|.- ...|+.+ ++ ++|||+. +...++.+.+++ ...++ ...|...
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~~-----~v~~~D~------s~~~i~~a~~~~----~~~~~~~~i~~~~~-- 119 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--GA-----KVVASDI------SPQMVEEARERA----PEAGLAGNITFEVG-- 119 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--CC-----EEEEEEC------CHHHHHHHHHHH----HhcCCccCcEEEEc--
Confidence 456899999998853 3445543 32 3899964 333444444433 33344 3455432
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEE
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTL 356 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtl 356 (495)
+ ++... ..=+.++ |...|||+. ......+++.+.++.+..+++
T Consensus 120 d-~~~~~------~~fD~v~--~~~~l~~~~---~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 120 D-LESLL------GRFDTVV--CLDVLIHYP---QEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred C-chhcc------CCcCEEE--EcchhhcCC---HHHHHHHHHHHHhhcCCeEEE
Confidence 1 22110 1112333 334467763 234667777776654443333
No 57
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=32.34 E-value=4.8e+02 Score=25.73 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=49.4
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~~~ 304 (495)
=+|+|+|.|.|.--. .++... | +.-+||+|+. +...++.+.++ ++..|++ .+|.. .++
T Consensus 79 ~~VLDiG~G~G~~~~----~~a~~~-g---~~~~v~gvD~------s~~~l~~A~~~----~~~~g~~~v~~~~---~d~ 137 (272)
T PRK11873 79 ETVLDLGSGGGFDCF----LAARRV-G---PTGKVIGVDM------TPEMLAKARAN----ARKAGYTNVEFRL---GEI 137 (272)
T ss_pred CEEEEeCCCCCHHHH----HHHHHh-C---CCCEEEEECC------CHHHHHHHHHH----HHHcCCCCEEEEE---cch
Confidence 388999998874221 122222 2 3568999963 23334433332 3345553 44432 223
Q ss_pred cccccccccccCC--ceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 305 ETFKASALKLVRG--EALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 305 e~l~~~~L~l~~g--EaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
+++. +..+ +.|+.|+++ ||. ++....|=...|-|+|.-.+++
T Consensus 138 ~~l~-----~~~~~fD~Vi~~~v~--~~~----~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 138 EALP-----VADNSVDVIISNCVI--NLS----PDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred hhCC-----CCCCceeEEEEcCcc--cCC----CCHHHHHHHHHHHcCCCcEEEE
Confidence 3322 2222 355556654 554 2333334445577999854443
No 58
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=31.69 E-value=3.1e+02 Score=26.06 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=49.9
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
+|+|+|.+.|. +...++++- |..++|||+. +...++...+++ +..|+.-....+..+..+.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~-----~~~~v~gid~------s~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~ 62 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH-----PHLQLHGYTI------SPEQAEVGRERI----RALGLQGRIRIFYRDSAKD 62 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC-----CCCEEEEEEC------CHHHHHHHHHHH----HhcCCCcceEEEecccccC
Confidence 68999888875 344555543 2468999963 333344443333 3445543222222221111
Q ss_pred cccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 307 FKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 307 l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+. .=+.++ +...+||+. + ...+|+.+ +.|+|.-.+++
T Consensus 63 ~~~~-----~fD~I~--~~~~l~~~~----~-~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 63 PFPD-----TYDLVF--GFEVIHHIK----D-KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred CCCC-----CCCEee--hHHHHHhCC----C-HHHHHHHHHHHcCCCCEEEE
Confidence 1111 112332 344567762 2 35677776 55999855443
No 59
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=30.67 E-value=1.9e+02 Score=30.39 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=47.8
Q ss_pred CeeEE---EEcc----ccCcc---chHHHHHHHhcCCCCCCCCeEEEEEecCCCC-CCCChHHHHHHHHHHHHHHHHc-C
Q 011012 224 RRVHI---VDYD----IMEGI---QWASLMQALVSRKDGPPAPHLRITALSRGGS-GRRSISTVQETGRRLVAFAASI-G 291 (495)
Q Consensus 224 ~~VHI---VDf~----I~~G~---QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~-~~~~~~~l~etg~rL~~fA~sl-g 291 (495)
-+||| +|.| -.+|+ +++.+++.+.....- +.++|+||..... ...+.+...+.-+++.++++.+ |
T Consensus 125 ~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~~~~~~~---~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~g 201 (379)
T cd06841 125 AKVGIRLNMNYGNNVWSRFGFDIEENGEALAALKKIQES---KNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFG 201 (379)
T ss_pred ceEEEEECCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC---CCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHhcC
Confidence 37888 4555 23575 567778777665432 4799999976632 2235566777778888888888 7
Q ss_pred CCeEEe
Q 011012 292 QPFSFH 297 (495)
Q Consensus 292 vpFeF~ 297 (495)
.+++|-
T Consensus 202 ~~~~~i 207 (379)
T cd06841 202 LELEYL 207 (379)
T ss_pred CCCCEE
Confidence 776654
No 60
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=30.66 E-value=2.7e+02 Score=29.16 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--CeEEeeeecCC
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--PFSFHQCRLDS 303 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--pFeF~~v~~~~ 303 (495)
-.|+|+|.|.|. +...|+.+ + .++|||+. +...++...++ ++..++ ..+|....
T Consensus 133 ~~ILDIGCG~G~----~s~~La~~-g------~~V~GID~------s~~~i~~Ar~~----~~~~~~~~~i~~~~~d--- 188 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLARM-G------ATVTGVDA------VDKNVKIARLH----ADMDPVTSTIEYLCTT--- 188 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHHc-C------CEEEEEeC------CHHHHHHHHHH----HHhcCcccceeEEecC---
Confidence 479999999987 45567642 2 46999963 22333332222 222222 34554322
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+++. ..++..=+|-|...|||+.. ...||+.+ +-|+|.-.+++.
T Consensus 189 ae~l~-----~~~~~FD~Vi~~~vLeHv~d-----~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 189 AEKLA-----DEGRKFDAVLSLEVIEHVAN-----PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred HHHhh-----hccCCCCEEEEhhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEE
Confidence 22221 11222224555667899832 24677776 457998666654
No 61
>PRK06922 hypothetical protein; Provisional
Probab=30.59 E-value=3.7e+02 Score=31.22 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=56.5
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDE 305 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e 305 (495)
-.|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.+++ +..|.++++... + ..
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~-----P~~kVtGIDI------S~~MLe~Ararl----~~~g~~ie~I~g--D-a~ 477 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET-----EDKRIYGIDI------SENVIDTLKKKK----QNEGRSWNVIKG--D-AI 477 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC-----CCCEEEEEEC------CHHHHHHHHHHh----hhcCCCeEEEEc--c-hH
Confidence 479999999984 445666652 4589999974 333455444332 233555555322 1 11
Q ss_pred ccccccccccCCceEEEeecccCCccccC--------CCchHHHHHHHh-hhcCCcEEEEE
Q 011012 306 TFKASALKLVRGEALIINCMLHLPHFSYR--------APDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 306 ~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~--------~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++. .. +.++.+=+|-+.+.+|++..- .+.....+|+.+ +.|+|.-.+++
T Consensus 478 dLp-~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 478 NLS-SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred hCc-cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 111 00 223333344455567776210 112345666665 78999744433
No 62
>PRK03646 dadX alanine racemase; Reviewed
Probab=30.45 E-value=1.6e+02 Score=30.94 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=26.0
Q ss_pred eeEE-EEcccc-Cccc---hHHHHHHHhcCCCCCCCCeEEEEEecCC
Q 011012 225 RVHI-VDYDIM-EGIQ---WASLMQALVSRKDGPPAPHLRITALSRG 266 (495)
Q Consensus 225 ~VHI-VDf~I~-~G~Q---WpsLiqaLA~R~~Gpp~P~LRITgI~~p 266 (495)
+||| ||-|+. .|+. ++.+++.+... |.|+|+||-..
T Consensus 118 ~vhLkvDTGM~R~G~~~~e~~~~~~~i~~~------~~l~~~Gi~sH 158 (355)
T PRK03646 118 DIYLKVNSGMNRLGFQPERVQTVWQQLRAM------GNVGEMTLMSH 158 (355)
T ss_pred EEEEEeeCCCCCCCCCHHHHHHHHHHHHhC------CCCEEEEEEcC
Confidence 6899 999985 5775 55666665332 57999999765
No 63
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=30.17 E-value=92 Score=30.28 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=31.6
Q ss_pred hhhcCCeeEEEEccccCc---cchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 011012 219 AVANDRRVHIVDYDIMEG---IQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAF 286 (495)
Q Consensus 219 A~~g~~~VHIVDf~I~~G---~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~f 286 (495)
+++=.+.=|++|+|-+.| ++|. ++ + |+.|+++|+. +.+.++.+.+++.+|
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a-~~--------~---p~~~v~AIe~------~~~a~~~~~~N~~~f 81 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWA-LA--------G---PSGRVIAIER------DEEALELIERNAARF 81 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHH-Hh--------C---CCceEEEEec------CHHHHHHHHHHHHHh
Confidence 344344449999999887 6665 21 2 6899999953 344555555554444
No 64
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=29.86 E-value=2.2e+02 Score=28.71 Aligned_cols=111 Identities=23% Similarity=0.206 Sum_probs=69.0
Q ss_pred hhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEee
Q 011012 219 AVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQ 298 (495)
Q Consensus 219 A~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~ 298 (495)
-+.-+.---|+|+|.|-|-+ -+-|++|= |.=.||||++ +.+-+++ |++.....+|..
T Consensus 25 ~Vp~~~~~~v~DLGCGpGns----TelL~~Rw-----P~A~i~GiDs------S~~Mla~--------Aa~rlp~~~f~~ 81 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNS----TELLARRW-----PDAVITGIDS------SPAMLAK--------AAQRLPDATFEE 81 (257)
T ss_pred hCCccccceeeecCCCCCHH----HHHHHHhC-----CCCeEeeccC------CHHHHHH--------HHHhCCCCceec
Confidence 34445566799999999866 34556664 4567999963 3344443 344455556643
Q ss_pred eecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEeecCCCCC
Q 011012 299 CRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEETGPIG 365 (495)
Q Consensus 299 v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ea~~n~ 365 (495)
-.+..| +++ .+-..|.-|.+||- | |+..+.|-+.+-.|.|.-|.-|..-.|+..
T Consensus 82 aDl~~w---~p~----~~~dllfaNAvlqW--l----pdH~~ll~rL~~~L~Pgg~LAVQmPdN~de 135 (257)
T COG4106 82 ADLRTW---KPE----QPTDLLFANAVLQW--L----PDHPELLPRLVSQLAPGGVLAVQMPDNLDE 135 (257)
T ss_pred ccHhhc---CCC----Cccchhhhhhhhhh--c----cccHHHHHHHHHhhCCCceEEEECCCccCc
Confidence 322223 221 12345667777643 5 567788889999999999888865555443
No 65
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=29.80 E-value=1.6e+02 Score=28.36 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=66.4
Q ss_pred CeeEEEEcccc---CccchHHHHHHHhcCCCCCCCCeEEE------EEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 224 RRVHIVDYDIM---EGIQWASLMQALVSRKDGPPAPHLRI------TALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 224 ~~VHIVDf~I~---~G~QWpsLiqaLA~R~~Gpp~P~LRI------TgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.+|+||.|=-+ -+..=.++|.+|+.+. +.+ |+|.. .+....++.-+.+|+++.+..|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-------~~~~~y~~t~~IN~-------dd~~~~~~~fVk~fie~~~~~~ 124 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAK-------FPPVKYQTTTIINA-------DDAIVGTGMFVKSSAKKGKKEN 124 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcC-------CCcccccceEEEEC-------ccchhhHHHHHHHHHHHhcccC
Confidence 48999999754 3467778999996542 446 88842 1235568888999999999888
Q ss_pred EEeeeecCCccccccccccccC-Cce-EEEeecccCCc--cccCCCchHHHHHHHhhhc
Q 011012 295 SFHQCRLDSDETFKASALKLVR-GEA-LIINCMLHLPH--FSYRAPDSIASFLSGAKTL 349 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~-gEa-LaVN~~~~Lh~--L~~~~~~~~~~fL~~ir~L 349 (495)
-|.++..+. +.......++.. .++ ++||-.=.+.. ....++..++.++..|++|
T Consensus 125 P~~~vllD~-~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 125 PWSQVVLDD-KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGL 182 (184)
T ss_pred CcceEEECC-cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 877776654 222222344432 245 46664333222 1122233455667766654
No 66
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=28.40 E-value=3.4e+02 Score=27.60 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|+|.+.=+.-=||+|+|.| |-.++..+|++.| .++|||.. +.... +...+.++..|++
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g------~~v~gitl------S~~Q~----~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG------CHVTGITL------SEEQA----EYARERIREAGLE 111 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH--------EEEEEES-------HHHH----HHHHHHHHCSTSS
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC------cEEEEEEC------CHHHH----HHHHHHHHhcCCC
Confidence 445565543444588888665 7788999999863 57999952 22222 2345566677876
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
=..... ..+..++.. .=+-++.|- .+-|+. +.....|++.+ +-|+|.-..++.
T Consensus 112 ~~v~v~-~~D~~~~~~-----~fD~IvSi~---~~Ehvg---~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 112 DRVEVR-LQDYRDLPG-----KFDRIVSIE---MFEHVG---RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp STEEEE-ES-GGG--------S-SEEEEES---EGGGTC---GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CceEEE-EeeccccCC-----CCCEEEEEe---chhhcC---hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 322222 223333333 122233332 355662 34577889888 569999777663
No 67
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.97 E-value=1.5e+02 Score=29.45 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~ 302 (495)
..|++|.|-|-|+ |.+.=+++. |.+++|-|++- .+.... |...++.+|++ .++..-+++
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-------p~~~vtLles~---~Kk~~F-------L~~~~~eL~L~nv~i~~~RaE 127 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-------PDLKVTLLESL---GKKIAF-------LREVKKELGLENVEIVHGRAE 127 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-------cCCcEEEEccC---chHHHH-------HHHHHHHhCCCCeEEehhhHh
Confidence 5789998886665 888777655 57889999742 334444 44567788998 888775544
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=27.32 E-value=4.7e+02 Score=25.00 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=50.4
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
+..+|+|+|.+.|.- ...|+.+ + .++|+|+. +...++...+++ ...++..+|......
T Consensus 48 ~~~~vLdiG~G~G~~----~~~l~~~--~-----~~v~~iD~------s~~~~~~a~~~~----~~~~~~~~~~~~~~~- 105 (233)
T PRK05134 48 FGKRVLDVGCGGGIL----SESMARL--G-----ADVTGIDA------SEENIEVARLHA----LESGLKIDYRQTTAE- 105 (233)
T ss_pred CCCeEEEeCCCCCHH----HHHHHHc--C-----CeEEEEcC------CHHHHHHHHHHH----HHcCCceEEEecCHH-
Confidence 456899999988763 3344443 2 35899963 233344433332 334555566543222
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
++.. ...+-.=+|-|...++|+. +. ..+|+.+ +-|+|.-.+++.
T Consensus 106 --~~~~----~~~~~fD~Ii~~~~l~~~~----~~-~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 --ELAA----EHPGQFDVVTCMEMLEHVP----DP-ASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred --Hhhh----hcCCCccEEEEhhHhhccC----CH-HHHHHHHHHHcCCCcEEEEE
Confidence 2210 0112122333444566652 22 3455554 668888555443
No 69
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=25.77 E-value=1.9e+02 Score=28.40 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=37.1
Q ss_pred eeEE-EEcc--c-cCccchH---HHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 225 RVHI-VDYD--I-MEGIQWA---SLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 225 ~VHI-VDf~--I-~~G~QWp---sLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
.||| ||-| + -.|+.+. .+++.+. .- |.|++.||-...+...+.+..++.-+++.++.+.++
T Consensus 122 ~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~----~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (229)
T TIGR00044 122 NVLLQINISDEESKSGIQPEELLELAIQIE----EL--KHLKLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIK 189 (229)
T ss_pred eEEEEEECCCCCCCCCCCHHHHHHHHHHHh----cC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6888 8884 4 4688653 4444442 23 689999997654433444555555566666665544
No 70
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=24.00 E-value=5.9e+02 Score=27.50 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=55.5
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~ 302 (495)
..-+|+|++-|.|. +--.||.+. -+++||+. +...++.+.+ -|+..|+. .+|....+.
T Consensus 297 ~~~~VLDlgcGtG~----~sl~la~~~-------~~V~gvD~------s~~al~~A~~----n~~~~~~~~v~~~~~d~~ 355 (443)
T PRK13168 297 PGDRVLDLFCGLGN----FTLPLARQA-------AEVVGVEG------VEAMVERARE----NARRNGLDNVTFYHANLE 355 (443)
T ss_pred CCCEEEEEeccCCH----HHHHHHHhC-------CEEEEEeC------CHHHHHHHHH----HHHHcCCCceEEEEeChH
Confidence 44689999999985 333466542 26899963 3444554433 34445553 555443221
Q ss_pred CccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
+.+....+.-..=++|++|= ++ .....++..+.+++|+-++.+.
T Consensus 356 --~~l~~~~~~~~~fD~Vi~dP----Pr------~g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 356 --EDFTDQPWALGGFDKVLLDP----PR------AGAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred --HhhhhhhhhcCCCCEEEECc----CC------cChHHHHHHHHhcCCCeEEEEE
Confidence 11110001111125666661 11 1245777899999999888774
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=22.90 E-value=2.3e+02 Score=23.65 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=20.9
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+|+|+|.|.|.. ...|+.+. |..++|+|+.
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~-----~~~~v~~vD~ 51 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV-----PNGRVYAIER 51 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC-----CCceEEEEcC
Confidence 899999998754 33444442 3478999963
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=22.14 E-value=2.2e+02 Score=26.23 Aligned_cols=116 Identities=17% Similarity=0.203 Sum_probs=61.1
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
+-..+++.+...+.=+|+|+|.|.|.-= -.|+.+ + |..++|+++. +...++-+ .+-++..+
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~----~~la~~--~---~~~~v~~vDi------~~~a~~~a----~~n~~~n~ 79 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVIS----LALAKR--G---PDAKVTAVDI------NPDALELA----KRNAERNG 79 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHH----HHHHHT--S---TCEEEEEEES------BHHHHHHH----HHHHHHTT
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHH----HHHHHh--C---CCCEEEEEcC------CHHHHHHH----HHHHHhcC
Confidence 4456777776656677999999999532 233444 3 5789999963 33444443 33355566
Q ss_pred CC-eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE
Q 011012 292 QP-FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT 355 (495)
Q Consensus 292 vp-FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt 355 (495)
+. .++. ..+-.+.+... +=+.++.|=- +|.-....-.....|++.. +-|+|.-..
T Consensus 80 ~~~v~~~--~~d~~~~~~~~-----~fD~Iv~NPP--~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 80 LENVEVV--QSDLFEALPDG-----KFDLIVSNPP--FHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp CTTEEEE--ESSTTTTCCTT-----CEEEEEE-----SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred ccccccc--ccccccccccc-----ceeEEEEccc--hhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 66 4443 33333333221 2246666643 2222110011345566544 669998544
No 73
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=22.01 E-value=5.6e+02 Score=25.05 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=49.8
Q ss_pred hhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEe-cCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEee
Q 011012 220 VANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITAL-SRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQ 298 (495)
Q Consensus 220 ~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI-~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~ 298 (495)
+.+.+.|=+||=.|.-|-=-..+|++|-..- | ..+.-+..| ++. + .+-..+..++++.+|+|.+|..
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~--p-~~~yvvasL~d~~-----~----~~~~~~~~~~~~~lgi~i~~vs 185 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKY--P-RKRYVVASLLDWR-----S----EEDRARFEALAEELGIPIDVVS 185 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhC--C-CceEEEEEEeeCC-----C----HHHHHHHHHHHHHcCCcEEEEE
Confidence 4447799999999999999999999998774 2 233333333 221 1 2345677889999999999987
Q ss_pred ee
Q 011012 299 CR 300 (495)
Q Consensus 299 v~ 300 (495)
+.
T Consensus 186 L~ 187 (191)
T PF15609_consen 186 LL 187 (191)
T ss_pred ee
Confidence 64
No 74
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=21.86 E-value=45 Score=24.62 Aligned_cols=16 Identities=44% Similarity=0.897 Sum_probs=13.3
Q ss_pred ccCCCccHHHHHHHhh
Q 011012 45 LSGGQDDFHDLIESMM 60 (495)
Q Consensus 45 ~~~~~~~~~~~~~~~~ 60 (495)
++-.+||||-+||++|
T Consensus 3 ~~~~~de~hpFiEalL 18 (44)
T PF10524_consen 3 ISSQQDEFHPFIEALL 18 (44)
T ss_pred cCchHHHhhhHHHHHH
Confidence 4567899999999987
No 75
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=21.86 E-value=9.9e+02 Score=26.02 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=19.7
Q ss_pred chHHHHHHHhhhcCCcEEEEEeecC
Q 011012 337 DSIASFLSGAKTLNPRLVTLVEEET 361 (495)
Q Consensus 337 ~~~~~fL~~ir~L~PkvvtlvE~ea 361 (495)
+.++.-...|...+|++|+..|.+.
T Consensus 187 ~g~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 187 GGLELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred hHHHHHHHHHhhcCCCEEEEecccc
Confidence 3567777788999999999987653
No 76
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.84 E-value=63 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.1
Q ss_pred cCCeeEEEEccccC--ccchHHH
Q 011012 222 NDRRVHIVDYDIME--GIQWASL 242 (495)
Q Consensus 222 g~~~VHIVDf~I~~--G~QWpsL 242 (495)
|.+||=|||||+-| |.|+.--
T Consensus 152 ~~~RVaIiD~DvHHGnGTqeify 174 (340)
T COG0123 152 GVKRVAIIDFDVHHGNGTQEIFY 174 (340)
T ss_pred CCCcEEEEEecCCCChhhHHHHc
Confidence 78999999999955 6887654
No 77
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=21.46 E-value=7.4e+02 Score=23.89 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=55.4
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~~~ 304 (495)
-.|+|++-|.|. --|.+|+.. . -+||+|+. +...++.+ .+-++..|+. .+|.. .+.
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a----~~V~~vE~------~~~a~~~a----~~Nl~~~~~~~v~~~~---~D~ 111 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A----AGATLLEM------DRAVAQQL----IKNLATLKAGNARVVN---TNA 111 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C----CEEEEEEC------CHHHHHHH----HHHHHHhCCCcEEEEE---chH
Confidence 368999998882 224455542 2 36999963 23333333 3344445553 44432 222
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh---cCCcEEEEEeecCC
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT---LNPRLVTLVEEETG 362 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~---L~PkvvtlvE~ea~ 362 (495)
.+.-+. . -.+=+.|++|=-|+ .+-...++..|.. |+|+-++++|....
T Consensus 112 ~~~l~~-~-~~~fDlV~~DPPy~--------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 112 LSFLAQ-P-GTPHNVVFVDPPFR--------KGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHhh-c-CCCceEEEECCCCC--------CChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 111010 1 11235677773321 2345667777776 69999999986654
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=21.35 E-value=1.2e+02 Score=33.54 Aligned_cols=51 Identities=31% Similarity=0.409 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCC
Q 011012 273 ISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLP 329 (495)
Q Consensus 273 ~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh 329 (495)
.+.+++.|.||.+-|..-+.||+|..|.-.++..| .-.|-.|+||.-+-|+
T Consensus 73 ~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAF------A~~Gg~v~vntGLll~ 123 (484)
T COG4783 73 EEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAF------ATPGGYVVVNTGLLLT 123 (484)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchh------hcCCceEEEehHHHHh
Confidence 36789999999999999999999998754433222 2258899999877654
No 79
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=20.95 E-value=6.4e+02 Score=22.97 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=15.2
Q ss_pred cchhhhhccCCceeccCCcchH
Q 011012 427 YSWGDWLGVVGFKPVNISFANH 448 (495)
Q Consensus 427 ~~W~~rm~~AGF~~v~ls~~~~ 448 (495)
+.....|+++||..+.....+.
T Consensus 129 ~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 129 EELETLALEAGFSSACHYEISG 150 (160)
T ss_pred HHHHHHHHHcCCCcceEEECcc
Confidence 4566678999999876554433
No 80
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=3.2e+02 Score=27.84 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=31.1
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
||+|+|.|.|+. +++-...+ |..+|+|++. +.+.++-+.+ -|+..|+
T Consensus 113 ~ilDlGTGSG~i------ai~la~~~---~~~~V~a~Di------s~~Al~~A~~----Na~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAI------AIALAKEG---PDAEVIAVDI------SPDALALARE----NAERNGL 159 (280)
T ss_pred cEEEecCChHHH------HHHHHhhC---cCCeEEEEEC------CHHHHHHHHH----HHHHcCC
Confidence 999999999975 44444444 4789999974 4445555433 4555665
Done!