Query 011012
Match_columns 495
No_of_seqs 155 out of 707
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gek_A TRNA (CMO5U34)-methyltr 96.7 0.0035 1.2E-07 61.2 8.5 107 225-359 71-179 (261)
2 3dtn_A Putative methyltransfer 93.9 0.14 4.9E-06 47.5 8.0 112 214-357 33-146 (234)
3 4a6d_A Hydroxyindole O-methylt 93.7 0.097 3.3E-06 52.9 6.9 118 213-362 168-287 (353)
4 3mcz_A O-methyltransferase; ad 93.6 0.71 2.4E-05 45.8 13.0 116 215-360 169-289 (352)
5 3dp7_A SAM-dependent methyltra 93.4 0.45 1.5E-05 48.0 11.2 115 215-359 170-288 (363)
6 2r3s_A Uncharacterized protein 93.3 1.1 3.7E-05 43.9 13.6 116 214-361 153-274 (335)
7 3i53_A O-methyltransferase; CO 93.1 0.67 2.3E-05 45.7 11.8 111 215-358 160-274 (332)
8 3mgg_A Methyltransferase; NYSG 91.5 2.4 8.1E-05 40.1 13.0 102 224-357 37-140 (276)
9 1qzz_A RDMB, aclacinomycin-10- 90.9 1.8 6.1E-05 43.2 11.9 113 214-359 172-288 (374)
10 1xxl_A YCGJ protein; structura 89.8 6.4 0.00022 36.5 14.2 108 216-357 13-122 (239)
11 2ip2_A Probable phenazine-spec 89.6 1.8 6.2E-05 42.5 10.6 115 214-360 158-274 (334)
12 4fsd_A Arsenic methyltransfera 89.5 2.9 9.8E-05 42.4 12.2 113 224-357 83-201 (383)
13 3htx_A HEN1; HEN1, small RNA m 89.4 1.8 6.1E-05 49.4 11.3 123 214-361 711-837 (950)
14 3dlc_A Putative S-adenosyl-L-m 89.2 5.2 0.00018 35.7 12.6 112 213-358 33-147 (219)
15 3p9c_A Caffeic acid O-methyltr 88.6 2.4 8.1E-05 42.8 10.8 108 214-360 190-300 (364)
16 3gwz_A MMCR; methyltransferase 88.5 1.9 6.4E-05 43.5 10.0 115 214-361 192-310 (369)
17 1vl5_A Unknown conserved prote 88.3 12 0.0004 35.0 14.8 109 215-357 28-138 (260)
18 3dh0_A SAM dependent methyltra 88.0 5.6 0.00019 35.9 12.1 113 214-357 27-141 (219)
19 3ujc_A Phosphoethanolamine N-m 87.8 4.9 0.00017 37.3 11.8 132 193-357 25-157 (266)
20 3hnr_A Probable methyltransfer 86.8 5.4 0.00018 36.1 11.2 43 212-265 33-75 (220)
21 3bkx_A SAM-dependent methyltra 86.3 12 0.00042 34.9 13.8 127 214-364 33-165 (275)
22 2aot_A HMT, histamine N-methyl 86.1 4.9 0.00017 38.6 11.1 118 223-357 51-170 (292)
23 3m70_A Tellurite resistance pr 86.0 6.5 0.00022 37.4 11.8 112 213-357 109-221 (286)
24 2p35_A Trans-aconitate 2-methy 85.0 6.2 0.00021 36.5 10.9 107 215-358 24-131 (259)
25 3vc1_A Geranyl diphosphate 2-C 84.1 11 0.00037 36.5 12.6 110 214-357 106-219 (312)
26 2o57_A Putative sarcosine dime 83.9 24 0.00081 33.5 14.8 114 214-360 68-189 (297)
27 3jwh_A HEN1; methyltransferase 83.7 9.3 0.00032 34.6 11.3 115 215-359 20-141 (217)
28 3reo_A (ISO)eugenol O-methyltr 83.4 5.2 0.00018 40.3 10.2 108 214-360 192-302 (368)
29 3jwg_A HEN1, methyltransferase 83.3 5.9 0.0002 35.9 9.7 119 214-362 19-144 (219)
30 3hem_A Cyclopropane-fatty-acyl 83.1 13 0.00046 35.6 12.7 112 215-357 63-181 (302)
31 3ocj_A Putative exported prote 81.5 9.8 0.00034 36.7 11.1 106 224-358 118-226 (305)
32 3kkz_A Uncharacterized protein 81.4 32 0.0011 32.1 14.4 115 209-357 30-148 (267)
33 3g5l_A Putative S-adenosylmeth 81.0 12 0.0004 34.7 11.0 111 213-358 33-144 (253)
34 2xvm_A Tellurite resistance pr 80.7 15 0.0005 32.3 11.1 110 213-355 21-132 (199)
35 1nkv_A Hypothetical protein YJ 80.1 22 0.00075 32.7 12.6 111 213-357 25-138 (256)
36 3ofk_A Nodulation protein S; N 79.5 15 0.00052 32.9 11.0 109 216-357 43-152 (216)
37 1ve3_A Hypothetical protein PH 79.1 18 0.00061 32.5 11.4 101 225-357 39-140 (227)
38 3lst_A CALO1 methyltransferase 78.9 3.2 0.00011 41.2 6.7 43 214-265 174-216 (348)
39 2qe6_A Uncharacterized protein 77.6 13 0.00043 35.9 10.4 134 198-357 47-194 (274)
40 3bus_A REBM, methyltransferase 75.7 31 0.0011 32.1 12.4 111 214-357 51-164 (273)
41 2vdw_A Vaccinia virus capping 75.6 18 0.0006 35.5 10.9 109 225-357 49-167 (302)
42 3f4k_A Putative methyltransfer 75.0 51 0.0017 30.2 13.8 121 203-357 24-148 (257)
43 4e2x_A TCAB9; kijanose, tetron 74.7 5.9 0.0002 40.2 7.4 109 215-358 98-207 (416)
44 3i9f_A Putative type 11 methyl 73.8 29 0.00099 29.7 10.8 103 214-357 7-110 (170)
45 3r0q_C Probable protein argini 73.7 20 0.0007 36.1 11.1 144 214-389 53-205 (376)
46 3u81_A Catechol O-methyltransf 73.5 10 0.00035 34.7 8.1 144 189-358 23-169 (221)
47 1fp1_D Isoliquiritigenin 2'-O- 73.3 9.1 0.00031 38.3 8.3 43 214-265 198-241 (372)
48 1x19_A CRTF-related protein; m 73.2 15 0.00052 36.3 9.9 114 214-360 180-297 (359)
49 3g2m_A PCZA361.24; SAM-depende 73.2 7.8 0.00027 37.2 7.5 115 214-358 73-189 (299)
50 3h2b_A SAM-dependent methyltra 72.4 14 0.00048 32.8 8.6 98 225-358 42-140 (203)
51 1dus_A MJ0882; hypothetical pr 70.9 30 0.001 29.8 10.3 113 212-358 40-156 (194)
52 3q7e_A Protein arginine N-meth 69.4 29 0.00098 34.5 10.9 103 225-358 67-172 (349)
53 4htf_A S-adenosylmethionine-de 68.7 53 0.0018 30.8 12.3 109 216-358 61-172 (285)
54 3ccf_A Cyclopropane-fatty-acyl 68.4 37 0.0013 31.9 11.1 106 214-358 47-153 (279)
55 3g5t_A Trans-aconitate 3-methy 68.1 37 0.0013 32.3 11.1 110 224-357 36-147 (299)
56 3fzg_A 16S rRNA methylase; met 67.8 4.4 0.00015 38.3 4.1 101 227-359 52-152 (200)
57 4dcm_A Ribosomal RNA large sub 66.4 29 0.00099 35.1 10.4 118 212-357 210-332 (375)
58 3ou2_A SAM-dependent methyltra 65.9 30 0.001 30.7 9.4 108 213-357 34-144 (218)
59 3bkw_A MLL3908 protein, S-aden 65.6 42 0.0014 30.3 10.5 109 214-357 33-142 (243)
60 3bgv_A MRNA CAP guanine-N7 met 65.4 39 0.0013 32.5 10.7 123 215-357 23-153 (313)
61 1wzn_A SAM-dependent methyltra 64.7 67 0.0023 29.3 11.9 104 223-359 40-145 (252)
62 1y8c_A S-adenosylmethionine-de 63.4 45 0.0015 30.1 10.2 103 224-358 37-141 (246)
63 2yqz_A Hypothetical protein TT 62.6 61 0.0021 29.6 11.1 101 224-358 39-140 (263)
64 3mq2_A 16S rRNA methyltransfer 62.3 5.9 0.0002 36.0 3.9 117 215-358 18-139 (218)
65 3p9n_A Possible methyltransfer 61.9 38 0.0013 29.7 9.2 108 225-362 45-156 (189)
66 3l8d_A Methyltransferase; stru 61.6 44 0.0015 30.2 9.8 97 224-358 53-152 (242)
67 3hm2_A Precorrin-6Y C5,15-meth 61.4 76 0.0026 27.0 12.2 60 215-293 16-75 (178)
68 3giw_A Protein of unknown func 59.6 7.7 0.00026 38.3 4.4 150 188-358 39-200 (277)
69 3thr_A Glycine N-methyltransfe 59.3 32 0.0011 32.4 8.8 123 214-358 47-174 (293)
70 3frh_A 16S rRNA methylase; met 58.7 17 0.00058 35.5 6.5 101 225-359 106-206 (253)
71 2p7i_A Hypothetical protein; p 58.2 34 0.0012 30.8 8.4 106 214-357 31-139 (250)
72 3e8s_A Putative SAM dependent 57.8 50 0.0017 29.2 9.4 44 211-265 39-82 (227)
73 3cc8_A Putative methyltransfer 56.8 69 0.0023 28.4 10.1 106 213-357 22-128 (230)
74 1tw3_A COMT, carminomycin 4-O- 56.8 45 0.0015 32.6 9.6 113 214-359 173-289 (360)
75 1kpg_A CFA synthase;, cyclopro 56.5 1.2E+02 0.004 28.4 12.2 109 215-357 55-166 (287)
76 3uwp_A Histone-lysine N-methyl 56.1 42 0.0014 35.2 9.5 118 214-357 163-286 (438)
77 3lcc_A Putative methyl chlorid 54.4 55 0.0019 29.7 9.2 99 226-357 68-169 (235)
78 3pfg_A N-methyltransferase; N, 53.9 46 0.0016 30.8 8.7 98 225-358 51-150 (263)
79 3sm3_A SAM-dependent methyltra 53.5 1.1E+02 0.0038 27.1 11.1 102 225-357 31-139 (235)
80 3p2e_A 16S rRNA methylase; met 53.4 21 0.00072 33.2 6.2 111 224-357 24-137 (225)
81 3eey_A Putative rRNA methylase 53.1 72 0.0025 27.9 9.5 108 226-357 24-137 (197)
82 2fyt_A Protein arginine N-meth 52.9 1.2E+02 0.0041 29.9 12.0 111 214-356 54-168 (340)
83 2yxd_A Probable cobalt-precorr 52.9 74 0.0025 27.0 9.4 102 216-357 27-129 (183)
84 1xtp_A LMAJ004091AAA; SGPP, st 52.8 67 0.0023 29.2 9.5 113 214-358 83-196 (254)
85 2y1w_A Histone-arginine methyl 51.6 70 0.0024 31.6 10.1 114 213-358 39-154 (348)
86 3gu3_A Methyltransferase; alph 51.3 1.6E+02 0.0054 27.6 12.7 102 224-357 22-124 (284)
87 2j66_A BTRK, decarboxylase; bu 51.3 51 0.0017 33.6 9.2 68 224-297 133-223 (428)
88 3lcv_B Sisomicin-gentamicin re 50.7 60 0.002 32.1 9.0 132 215-387 125-258 (281)
89 3e05_A Precorrin-6Y C5,15-meth 49.6 1.4E+02 0.0046 26.3 11.2 109 214-357 30-140 (204)
90 1pjz_A Thiopurine S-methyltran 49.5 55 0.0019 29.4 8.2 31 224-265 22-52 (203)
91 2p8j_A S-adenosylmethionine-de 48.9 1.3E+02 0.0043 26.4 10.5 103 225-358 24-127 (209)
92 1zg3_A Isoflavanone 4'-O-methy 48.5 34 0.0012 33.7 7.2 42 215-265 182-225 (358)
93 1wy7_A Hypothetical protein PH 48.5 1.3E+02 0.0045 26.3 10.6 96 225-354 50-145 (207)
94 3b3j_A Histone-arginine methyl 47.7 43 0.0015 35.2 8.1 113 214-358 148-262 (480)
95 1fp2_A Isoflavone O-methyltran 46.8 34 0.0012 33.6 6.8 33 224-265 188-220 (352)
96 3d2l_A SAM-dependent methyltra 46.6 1.6E+02 0.0055 26.3 12.0 108 216-358 27-136 (243)
97 1ws6_A Methyltransferase; stru 46.5 77 0.0026 26.7 8.3 106 225-361 42-149 (171)
98 2fk8_A Methoxy mycolic acid sy 45.6 1.1E+02 0.0037 29.2 10.1 109 215-357 81-192 (318)
99 1g6q_1 HnRNP arginine N-methyl 44.5 2.1E+02 0.0072 27.8 12.2 113 214-357 28-143 (328)
100 3njr_A Precorrin-6Y methylase; 44.4 1.7E+02 0.006 26.1 11.3 105 214-357 45-152 (204)
101 3e23_A Uncharacterized protein 44.1 1.2E+02 0.0041 26.7 9.6 96 225-358 44-140 (211)
102 3dxy_A TRNA (guanine-N(7)-)-me 43.9 75 0.0026 29.1 8.3 111 224-358 34-149 (218)
103 2pjd_A Ribosomal RNA small sub 42.1 42 0.0015 33.0 6.7 118 212-358 184-302 (343)
104 3ege_A Putative methyltransfer 41.6 58 0.002 30.3 7.2 41 214-265 24-64 (261)
105 2fpo_A Methylase YHHF; structu 41.4 62 0.0021 29.0 7.2 102 226-360 56-161 (202)
106 2gb4_A Thiopurine S-methyltran 40.9 1.7E+02 0.0059 27.4 10.5 105 224-355 68-187 (252)
107 3g89_A Ribosomal RNA small sub 40.1 48 0.0016 31.2 6.4 102 223-357 79-182 (249)
108 3g07_A 7SK snRNA methylphospha 39.9 62 0.0021 30.9 7.3 56 215-285 35-92 (292)
109 2esr_A Methyltransferase; stru 39.5 55 0.0019 28.1 6.3 104 226-362 33-141 (177)
110 1u2z_A Histone-lysine N-methyl 39.0 1.7E+02 0.0057 30.4 10.8 119 214-358 232-358 (433)
111 3bxo_A N,N-dimethyltransferase 38.9 1.4E+02 0.0048 26.6 9.3 99 224-358 40-140 (239)
112 2b3t_A Protein methyltransfera 36.9 2.6E+02 0.009 26.0 11.4 55 224-297 109-164 (276)
113 2g72_A Phenylethanolamine N-me 36.9 34 0.0012 32.4 4.8 21 425-445 235-255 (289)
114 3cpg_A Uncharacterized protein 36.4 94 0.0032 29.9 8.0 60 225-290 162-228 (282)
115 1nv8_A HEMK protein; class I a 36.2 1.2E+02 0.0041 29.0 8.8 59 105-165 14-79 (284)
116 2avn_A Ubiquinone/menaquinone 36.0 1.3E+02 0.0043 27.8 8.6 31 224-265 54-84 (260)
117 1yzh_A TRNA (guanine-N(7)-)-me 35.5 2.4E+02 0.008 25.0 10.9 111 224-359 41-156 (214)
118 2gs9_A Hypothetical protein TT 35.4 2.1E+02 0.007 25.1 9.7 101 216-357 29-130 (211)
119 2pt6_A Spermidine synthase; tr 33.9 74 0.0025 31.3 6.9 111 225-360 117-231 (321)
120 3lpm_A Putative methyltransfer 33.4 2.7E+02 0.0093 25.6 10.6 109 225-357 50-174 (259)
121 2kl8_A OR15; structural genomi 33.2 55 0.0019 25.4 4.4 34 256-297 42-75 (85)
122 1xj5_A Spermidine synthase 1; 33.1 2.6E+02 0.009 27.5 10.9 115 225-361 121-237 (334)
123 1uwv_A 23S rRNA (uracil-5-)-me 32.8 2.4E+02 0.0082 28.7 10.8 109 217-358 279-388 (433)
124 3ckk_A TRNA (guanine-N(7)-)-me 31.7 3.1E+02 0.011 25.2 12.2 50 222-286 44-93 (235)
125 2ex4_A Adrenal gland protein A 31.3 2E+02 0.0067 26.0 9.0 103 224-357 79-183 (241)
126 1o9g_A RRNA methyltransferase; 30.5 89 0.0031 28.8 6.5 56 216-284 43-98 (250)
127 3m33_A Uncharacterized protein 30.2 86 0.003 28.4 6.3 30 225-265 49-78 (226)
128 1zx0_A Guanidinoacetate N-meth 30.0 3.1E+02 0.01 24.7 11.6 106 224-357 60-168 (236)
129 2fca_A TRNA (guanine-N(7)-)-me 30.0 1.6E+02 0.0056 26.4 8.1 56 224-298 38-94 (213)
130 1dl5_A Protein-L-isoaspartate 29.7 3.6E+02 0.012 25.8 11.1 110 213-358 64-174 (317)
131 1jsx_A Glucose-inhibited divis 29.7 89 0.003 27.5 6.1 96 226-358 67-164 (207)
132 3iv6_A Putative Zn-dependent a 29.6 61 0.0021 31.2 5.3 41 214-265 35-75 (261)
133 2kw5_A SLR1183 protein; struct 29.0 2.8E+02 0.0097 23.9 13.5 98 227-358 32-130 (202)
134 2qgh_A Diaminopimelate decarbo 28.8 1.5E+02 0.0052 30.0 8.4 68 224-297 150-240 (425)
135 2qn6_B Translation initiation 28.3 34 0.0012 28.2 2.7 42 252-297 50-91 (93)
136 4hg2_A Methyltransferase type 28.2 3.4E+02 0.012 25.4 10.3 91 227-357 42-133 (257)
137 1iy9_A Spermidine synthase; ro 27.7 3.6E+02 0.012 25.5 10.5 109 225-358 76-188 (275)
138 2i7c_A Spermidine synthase; tr 27.0 1.3E+02 0.0046 28.7 7.3 109 225-358 79-191 (283)
139 3tfw_A Putative O-methyltransf 26.1 1.5E+02 0.005 27.5 7.2 102 225-358 64-169 (248)
140 3dmg_A Probable ribosomal RNA 26.1 5E+02 0.017 25.9 11.7 118 212-358 215-339 (381)
141 2fhp_A Methylase, putative; al 25.0 1.6E+02 0.0056 25.0 6.9 105 225-361 45-156 (187)
142 3grz_A L11 mtase, ribosomal pr 25.0 1.4E+02 0.0049 26.1 6.6 70 209-298 43-115 (205)
143 3dli_A Methyltransferase; PSI- 24.6 92 0.0031 28.3 5.4 96 225-357 42-138 (240)
144 3ggd_A SAM-dependent methyltra 24.4 1.4E+02 0.0048 27.0 6.6 104 226-359 58-164 (245)
145 3mti_A RRNA methylase; SAM-dep 24.4 3.3E+02 0.011 23.2 10.0 105 226-357 24-133 (185)
146 1ct5_A Protein (yeast hypothet 23.7 1.4E+02 0.005 28.3 6.7 61 203-267 105-183 (256)
147 2b2c_A Spermidine synthase; be 23.4 1.9E+02 0.0064 28.3 7.7 131 225-386 109-245 (314)
148 3tm4_A TRNA (guanine N2-)-meth 22.2 3.1E+02 0.011 27.1 9.2 108 224-357 217-329 (373)
149 5nul_A Flavodoxin; electron tr 22.2 3.3E+02 0.011 22.3 9.1 73 275-357 11-85 (138)
150 4hc4_A Protein arginine N-meth 21.7 4E+02 0.014 26.9 9.9 98 227-356 86-186 (376)
151 2a14_A Indolethylamine N-methy 21.6 2.1E+02 0.0071 26.5 7.3 39 318-357 156-195 (263)
152 3ghf_A Septum site-determining 21.3 97 0.0033 26.4 4.4 49 227-294 50-99 (120)
153 1inl_A Spermidine synthase; be 20.8 5.5E+02 0.019 24.4 11.2 132 226-386 92-228 (296)
154 4azs_A Methyltransferase WBDD; 20.4 34 0.0012 36.5 1.6 82 224-332 66-148 (569)
155 1lbq_A Ferrochelatase; rossman 20.4 3.3E+02 0.011 27.5 8.9 42 256-300 158-207 (362)
156 2i62_A Nicotinamide N-methyltr 20.3 1.5E+02 0.0051 26.9 5.9 19 427-445 220-238 (265)
157 1vlm_A SAM-dependent methyltra 20.1 3.9E+02 0.013 23.6 8.6 21 425-445 167-187 (219)
No 1
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=96.74 E-value=0.0035 Score=61.24 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=62.4
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|. +...|+.+-.. |..+||||+. +...++...+++.++- ...+++|..- +.
T Consensus 71 ~~~vLDlGcGtG~----~~~~la~~~~~---~~~~v~gvD~------s~~ml~~A~~~~~~~~--~~~~v~~~~~---D~ 132 (261)
T 4gek_A 71 GTQVYDLGCSLGA----ATLSVRRNIHH---DNCKIIAIDN------SPAMIERCRRHIDAYK--APTPVDVIEG---DI 132 (261)
T ss_dssp TCEEEEETCTTTH----HHHHHHHTCCS---SSCEEEEEES------CHHHHHHHHHHHHTSC--CSSCEEEEES---CT
T ss_pred CCEEEEEeCCCCH----HHHHHHHhcCC---CCCEEEEEEC------CHHHHHHHHHHHHhhc--cCceEEEeec---cc
Confidence 3479999999884 45666766433 4789999974 3445665555544321 2235666532 22
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE-EEEee
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV-TLVEE 359 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv-tlvE~ 359 (495)
+++. ..+-.+++ |.+.|||+. +..+..+|+.| |.|+|.-+ ++.|.
T Consensus 133 ~~~~-----~~~~d~v~--~~~~l~~~~---~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 133 RDIA-----IENASMVV--LNFTLQFLE---PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp TTCC-----CCSEEEEE--EESCGGGSC---HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc-----ccccccce--eeeeeeecC---chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 2332 22223444 445788883 33466788877 66999854 44443
No 2
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=93.95 E-value=0.14 Score=47.46 Aligned_cols=112 Identities=10% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHhHhhhh-cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 214 QAILEAVA-NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 214 qAILEA~~-g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
+.+++.+. ..+.-.|+|+|.|.|.- ...|+.+- |..++|||+. +...++.+.+++ +..+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~----~~~l~~~~-----~~~~v~~vD~------s~~~~~~a~~~~----~~~~- 92 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLL----SAFLMEKY-----PEATFTLVDM------SEKMLEIAKNRF----RGNL- 92 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHH----HHHHHHHC-----TTCEEEEEES------CHHHHHHHHHHT----CSCT-
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHH----HHHHHHhC-----CCCeEEEEEC------CHHHHHHHHHhh----ccCC-
Confidence 55666665 34568999999999853 44444442 3578999974 233344433332 2222
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+|... +.+++... +..=+|-|...|||+.. .....+|+.+ +.|+|.-++++
T Consensus 93 ~~~~~~~---d~~~~~~~------~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 93 KVKYIEA---DYSKYDFE------EKYDMVVSALSIHHLED---EDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp TEEEEES---CTTTCCCC------SCEEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEeC---chhccCCC------CCceEEEEeCccccCCH---HHHHHHHHHHHHhcCCCcEEEE
Confidence 4555432 22222221 33334445567888832 2344577766 56999855544
No 3
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=93.72 E-value=0.097 Score=52.93 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=65.5
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.+.|++++.-...-+|||+|-+.|. ++.+|+++. |++|+|..+.| ..++.+.+++ +.+ ..=
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~----~~~~l~~~~-----p~~~~~~~dlp-------~v~~~a~~~~-~~~--~~~ 228 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGA----LAKECMSLY-----PGCKITVFDIP-------EVVWTAKQHF-SFQ--EEE 228 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSH----HHHHHHHHC-----SSCEEEEEECH-------HHHHHHHHHS-CC----CC
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCH----HHHHHHHhC-----CCceeEeccCH-------HHHHHHHHhh-hhc--ccC
Confidence 4567777654455689999999995 566677664 68999998743 2333332222 111 111
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCc-EEEEEeecCC
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPR-LVTLVEEETG 362 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pk-vvtlvE~ea~ 362 (495)
..+|..- +-.++ .+...++++.. .-||+... .....+|+.+ +.|+|. .++++|.-.+
T Consensus 229 rv~~~~g--D~~~~------~~~~~D~~~~~--~vlh~~~d---~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 229 QIDFQEG--DFFKD------PLPEADLYILA--RVLHDWAD---GKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp SEEEEES--CTTTS------CCCCCSEEEEE--SSGGGSCH---HHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred ceeeecC--ccccC------CCCCceEEEee--eecccCCH---HHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 3555542 21111 12233454444 45787732 3455677777 569997 4555665443
No 4
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=93.63 E-value=0.71 Score=45.82 Aligned_cols=116 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred HhHhhhhcCC-eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 215 AILEAVANDR-RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 215 AILEA~~g~~-~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
.|++.+.-.+ ..+|+|+|-|.|. +...|+.+- |.+++|+++.| ..++...+ .++..++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~~-------~~~~~a~~----~~~~~~~~ 228 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGT----YLAQVLRRH-----PQLTGQIWDLP-------TTRDAARK----TIHAHDLG 228 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCH----HHHHHHHHC-----TTCEEEEEECG-------GGHHHHHH----HHHHTTCG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCH----HHHHHHHhC-----CCCeEEEEECH-------HHHHHHHH----HHHhcCCC
Confidence 5777766555 7899999999986 455555542 46899999742 12333333 33444553
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE-EEEeec
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV-TLVEEE 360 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv-tlvE~e 360 (495)
++|.... ..+..+ . .++.+=+|-|...|||+. +.....+|+.+ +.|+|.-. +++|.-
T Consensus 229 ~~v~~~~~d---~~~~~~--~--~~~~~D~v~~~~vlh~~~---~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 229 GRVEFFEKN---LLDARN--F--EGGAADVVMLNDCLHYFD---AREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGEEEEECC---TTCGGG--G--TTCCEEEEEEESCGGGSC---HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CceEEEeCC---cccCcc--c--CCCCccEEEEecccccCC---HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 6665432 211110 0 122233444556788873 23456777776 56899744 444443
No 5
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=93.42 E-value=0.45 Score=48.02 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=62.1
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-- 292 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-- 292 (495)
.+++.+.....-+|+|+|-|.|. +...|+++. |.+++|+++.| ..++... +.++..|+
T Consensus 170 ~~l~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~~-------~~~~~a~----~~~~~~~~~~ 229 (363)
T 3dp7_A 170 KALEIVFSHHPKRLLDIGGNTGK----WATQCVQYN-----KEVEVTIVDLP-------QQLEMMR----KQTAGLSGSE 229 (363)
T ss_dssp HHHHHHGGGCCSEEEEESCTTCH----HHHHHHHHS-----TTCEEEEEECH-------HHHHHHH----HHHTTCTTGG
T ss_pred HHHHHhcccCCCEEEEeCCCcCH----HHHHHHHhC-----CCCEEEEEeCH-------HHHHHHH----HHHHhcCccc
Confidence 34555444456799999999985 445555542 46899999731 2333333 33444555
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEee
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEE 359 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ 359 (495)
..+|.... ..+... .+. ..-++++. ...||++.. .....+|+.+ +.|+|.- ++++|.
T Consensus 230 ~v~~~~~d---~~~~~~-~~p-~~~D~v~~--~~vlh~~~~---~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 230 RIHGHGAN---LLDRDV-PFP-TGFDAVWM--SQFLDCFSE---EEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp GEEEEECC---CCSSSC-CCC-CCCSEEEE--ESCSTTSCH---HHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ceEEEEcc---ccccCC-CCC-CCcCEEEE--echhhhCCH---HHHHHHHHHHHHhcCCCcEEEEEee
Confidence 36665432 211100 011 12234444 446788732 3455778777 5599975 444453
No 6
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=93.31 E-value=1.1 Score=43.92 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=67.0
Q ss_pred HHhHhhhhc--CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 214 QAILEAVAN--DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 214 qAILEA~~g--~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
+.|++.+.. .+..+|+|+|-+.|. +...|+.+. |..++|+++. + ..++...+++ +..|
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~------~-~~~~~a~~~~----~~~~ 212 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGL----FGIAVAQHN-----PNAEIFGVDW------A-SVLEVAKENA----RIQG 212 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCH----HHHHHHHHC-----TTCEEEEEEC------H-HHHHHHHHHH----HHHT
T ss_pred HHHHHhcccccCCCCEEEEECCCcCH----HHHHHHHHC-----CCCeEEEEec------H-HHHHHHHHHH----HhcC
Confidence 466777765 667899999999994 445555543 3579999973 2 3444444444 3345
Q ss_pred CC--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeecC
Q 011012 292 QP--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEET 361 (495)
Q Consensus 292 vp--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ea 361 (495)
++ ++|.... ..+. .+..+ +=+|-|...|||+.. .....+|+.+ +.|+|.- ++++|...
T Consensus 213 ~~~~v~~~~~d---~~~~-----~~~~~-~D~v~~~~~l~~~~~---~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 213 VASRYHTIAGS---AFEV-----DYGND-YDLVLLPNFLHHFDV---ATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp CGGGEEEEESC---TTTS-----CCCSC-EEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCcceEEEecc---cccC-----CCCCC-CcEEEEcchhccCCH---HHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 53 6665432 2111 11122 334445556788732 2345677776 5589976 55555443
No 7
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=93.14 E-value=0.67 Score=45.75 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=61.6
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-- 292 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-- 292 (495)
.|++.+.-.+..+|+|+|-+.| .+...|+++- |.+++|+++. ...++...+++ +..|+
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G----~~~~~l~~~~-----p~~~~~~~D~-------~~~~~~a~~~~----~~~~~~~ 219 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSG----GLLSALLTAH-----EDLSGTVLDL-------QGPASAAHRRF----LDTGLSG 219 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTS----HHHHHHHHHC-----TTCEEEEEEC-------HHHHHHHHHHH----HHTTCTT
T ss_pred HHHHhCCCCCCCEEEEeCCChh----HHHHHHHHHC-----CCCeEEEecC-------HHHHHHHHHhh----hhcCcCc
Confidence 3445444345679999999999 4555566553 4689999963 22344444333 34454
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE-EEe
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT-LVE 358 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt-lvE 358 (495)
..+|..... .+.+ +. .-++++ |...|||+.. .....+|+.+ +.|+|.-.+ ++|
T Consensus 220 ~v~~~~~d~--~~~~-p~-----~~D~v~--~~~vlh~~~~---~~~~~~l~~~~~~L~pgG~l~i~e 274 (332)
T 3i53_A 220 RAQVVVGSF--FDPL-PA-----GAGGYV--LSAVLHDWDD---LSAVAILRRCAEAAGSGGVVLVIE 274 (332)
T ss_dssp TEEEEECCT--TSCC-CC-----SCSEEE--EESCGGGSCH---HHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CeEEecCCC--CCCC-CC-----CCcEEE--EehhhccCCH---HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 367765322 1111 11 123333 4446788732 2356777776 568997443 444
No 8
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=91.52 E-value=2.4 Score=40.15 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=57.5
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~ 302 (495)
+.-+|+|+|.+.|. +...|+.+ + |..++|||+. +...++.. .+.++..|++ .+|...
T Consensus 37 ~~~~vLDiG~G~G~----~~~~l~~~--~---~~~~v~~vD~------s~~~~~~a----~~~~~~~~~~~~~~~~~--- 94 (276)
T 3mgg_A 37 PGAKVLEAGCGIGA----QTVILAKN--N---PDAEITSIDI------SPESLEKA----RENTEKNGIKNVKFLQA--- 94 (276)
T ss_dssp TTCEEEETTCTTSH----HHHHHHHH--C---TTSEEEEEES------CHHHHHHH----HHHHHHTTCCSEEEEEC---
T ss_pred CCCeEEEecCCCCH----HHHHHHHh--C---CCCEEEEEEC------CHHHHHHH----HHHHHHcCCCCcEEEEc---
Confidence 34589999999884 44555555 2 3568999974 23334333 3344455664 555432
Q ss_pred CccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+.+++ ...++..=+|-|...|||+. + ...+|+.+ +-|+|.-++++
T Consensus 95 d~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~~ 140 (276)
T 3mgg_A 95 NIFSL-----PFEDSSFDHIFVCFVLEHLQ----S-PEEALKSLKKVLKPGGTITV 140 (276)
T ss_dssp CGGGC-----CSCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred ccccC-----CCCCCCeeEEEEechhhhcC----C-HHHHHHHHHHHcCCCcEEEE
Confidence 22222 12234444555666788873 2 24666666 56999855444
No 9
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=90.89 E-value=1.8 Score=43.22 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=63.3
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|++.+.-.+..+|+|+|.|.| .+...|+.+. |.+++|+++. ...++...+++ +..|++
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G----~~~~~l~~~~-----~~~~~~~~D~-------~~~~~~a~~~~----~~~~~~ 231 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNG----GMLAAIALRA-----PHLRGTLVEL-------AGPAERARRRF----ADAGLA 231 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTS----HHHHHHHHHC-----TTCEEEEEEC-------HHHHHHHHHHH----HHTTCT
T ss_pred HHHHHhCCCCCCCEEEEECCCcC----HHHHHHHHHC-----CCCEEEEEeC-------HHHHHHHHHHH----HhcCCC
Confidence 44666654445679999999999 4555555542 4689999963 22344443333 445653
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEee
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEE 359 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ 359 (495)
.+|..... .+.+. ..+=+|-|...|||+.. .....+|+.+ +.|+|.- ++++|.
T Consensus 232 ~~v~~~~~d~--~~~~~--------~~~D~v~~~~vl~~~~~---~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 232 DRVTVAEGDF--FKPLP--------VTADVVLLSFVLLNWSD---EDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp TTEEEEECCT--TSCCS--------CCEEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceEEEeCCC--CCcCC--------CCCCEEEEeccccCCCH---HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 66654321 11111 11323445556788732 2234677766 5689985 445554
No 10
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=89.84 E-value=6.4 Score=36.51 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=60.2
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-e
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-F 294 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-F 294 (495)
+++.+.-.+.-+|+|+|.|.|. +...|+.+ + + ++|||+. +...++...+ .++..|++ +
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~--~v~~vD~------s~~~~~~a~~----~~~~~~~~~v 71 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGH----TALAFSPY--V---Q--ECIGVDA------TKEMVEVASS----FAQEKGVENV 71 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSH----HHHHHGGG--S---S--EEEEEES------CHHHHHHHHH----HHHHHTCCSE
T ss_pred HHHHhCcCCCCEEEEEccCcCH----HHHHHHHh--C---C--EEEEEEC------CHHHHHHHHH----HHHHcCCCCe
Confidence 4455555556689999999886 44556654 2 2 7899974 2334444333 33444654 5
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+|.... .+++ ...++..=+|-|...+||+. + ...+|+.+ +-|+|.-.+++
T Consensus 72 ~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~LkpgG~l~~ 122 (239)
T 1xxl_A 72 RFQQGT---AESL-----PFPDDSFDIITCRYAAHHFS----D-VRKAVREVARVLKQDGRFLL 122 (239)
T ss_dssp EEEECB---TTBC-----CSCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecc---cccC-----CCCCCcEEEEEECCchhhcc----C-HHHHHHHHHHHcCCCcEEEE
Confidence 655432 2222 22233333455566788873 2 34555554 66899855544
No 11
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=89.60 E-value=1.8 Score=42.49 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=60.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.|++.+.-.. .+|+|+|-+.|. +...|+.+. |.+++|+++.|. .++...+++.+.- +.-.
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~~~-------~~~~a~~~~~~~~--~~~~ 218 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGE----LTKAILQAE-----PSARGVMLDREG-------SLGVARDNLSSLL--AGER 218 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCH----HHHHHHHHC-----TTCEEEEEECTT-------CTHHHHHHTHHHH--HTTS
T ss_pred HHHHHhCCCCC-CEEEEeCCCchH----HHHHHHHHC-----CCCEEEEeCcHH-------HHHHHHHHHhhcC--CCCc
Confidence 45666654334 799999999995 445555542 357999998621 2333333433221 2223
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeec
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEE 360 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~e 360 (495)
++|.... ..+ + +. ..-++++ +...|||+. +.....+|+.+ +.|+|.- ++++|.-
T Consensus 219 v~~~~~d---~~~--~--~~-~~~D~v~--~~~vl~~~~---~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 219 VSLVGGD---MLQ--E--VP-SNGDIYL--LSRIIGDLD---EAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp EEEEESC---TTT--C--CC-SSCSEEE--EESCGGGCC---HHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EEEecCC---CCC--C--CC-CCCCEEE--EchhccCCC---HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 5665432 211 1 11 1123444 444577773 23345777776 5689974 4445543
No 12
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=89.48 E-value=2.9 Score=42.40 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=62.8
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-C----CCeEEee
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-G----QPFSFHQ 298 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-g----vpFeF~~ 298 (495)
+.-+|+|+|.|.|.-=..|.+.+ + |..++|||+. +...++.+.+++.+.+..+ | -..+|..
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~-----~---~~~~v~gvD~------s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~ 148 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLV-----G---EHGKVIGVDM------LDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH-----T---TTCEEEEEEC------CHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE
T ss_pred CCCEEEEecCccCHHHHHHHHHh-----C---CCCEEEEEEC------CHHHHHHHHHHHHHhhhhcccccCCCceEEEE
Confidence 34579999999985333333332 2 3468999974 4556777777777776654 4 3566655
Q ss_pred eecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 299 CRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 299 v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+..+..+.+ ..+.++..=+|-|...|||+. + ...+|+.+ +-|+|.-.+++
T Consensus 149 ~d~~~l~~~~~--~~~~~~~fD~V~~~~~l~~~~----d-~~~~l~~~~r~LkpgG~l~i 201 (383)
T 4fsd_A 149 GFIENLATAEP--EGVPDSSVDIVISNCVCNLST----N-KLALFKEIHRVLRDGGELYF 201 (383)
T ss_dssp SCTTCGGGCBS--CCCCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred ccHHHhhhccc--CCCCCCCEEEEEEccchhcCC----C-HHHHHHHHHHHcCCCCEEEE
Confidence 33222211110 022233233444445677772 2 34666665 67999855444
No 13
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=89.42 E-value=1.8 Score=49.40 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=72.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHH--HHHcC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAF--AASIG 291 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~f--A~slg 291 (495)
+.|++.+.....-.|+|+|-|.|. +...|+.+. + |.-+||||+. +...++...+||... ++..|
T Consensus 711 e~LLelL~~~~g~rVLDVGCGTG~----lai~LAr~g--~--p~a~VtGVDI------S~emLe~AReRLa~~lnAkr~g 776 (950)
T 3htx_A 711 EYALKHIRESSASTLVDFGCGSGS----LLDSLLDYP--T--SLQTIIGVDI------SPKGLARAAKMLHVKLNKEACN 776 (950)
T ss_dssp HHHHHHHHHSCCSEEEEETCSSSH----HHHHHTSSC--C--CCCEEEEEES------CHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHHHHHhcccCCCEEEEECCCCCH----HHHHHHHhC--C--CCCeEEEEEC------CHHHHHHHHHHhhhccchhhcC
Confidence 345555554455679999999984 456666653 3 4579999974 445667776777654 22335
Q ss_pred CC-eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEEEEeecC
Q 011012 292 QP-FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVTLVEEET 361 (495)
Q Consensus 292 vp-FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~PkvvtlvE~ea 361 (495)
++ .+|.. .+.+++.. ..+..=+|-|...|||+.. .....||+. .+-|+|.++++...+.
T Consensus 777 l~nVefiq---GDa~dLp~-----~d~sFDlVV~~eVLeHL~d---p~l~~~L~eI~RvLKPG~LIISTPN~ 837 (950)
T 3htx_A 777 VKSATLYD---GSILEFDS-----RLHDVDIGTCLEVIEHMEE---DQACEFGEKVLSLFHPKLLIVSTPNY 837 (950)
T ss_dssp CSEEEEEE---SCTTSCCT-----TSCSCCEEEEESCGGGSCH---HHHHHHHHHHHHTTCCSEEEEEECBG
T ss_pred CCceEEEE---CchHhCCc-----ccCCeeEEEEeCchhhCCh---HHHHHHHHHHHHHcCCCEEEEEecCc
Confidence 54 45543 22333222 2232224444567888832 234467766 5779999777765543
No 14
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=89.22 E-value=5.2 Score=35.73 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=64.8
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.+.|++.+..... +|+|+|.|.|. +...|+.+ | ..++|||+. +...++.+.+ .++..|+
T Consensus 33 ~~~~~~~~~~~~~-~vLdiG~G~G~----~~~~l~~~---~---~~~v~~~D~------s~~~~~~a~~----~~~~~~~ 91 (219)
T 3dlc_A 33 AENIINRFGITAG-TCIDIGSGPGA----LSIALAKQ---S---DFSIRALDF------SKHMNEIALK----NIADANL 91 (219)
T ss_dssp HHHHHHHHCCCEE-EEEEETCTTSH----HHHHHHHH---S---EEEEEEEES------CHHHHHHHHH----HHHHTTC
T ss_pred HHHHHHhcCCCCC-EEEEECCCCCH----HHHHHHHc---C---CCeEEEEEC------CHHHHHHHHH----HHHhccc
Confidence 3556666655555 99999999985 45556655 2 478999974 3334444433 3445565
Q ss_pred C--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 293 P--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 293 p--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
. ++|....+ +++ .+.++..=+|-|...|||+ ++ ...+|+.+ +.|+|.-.+++.
T Consensus 92 ~~~~~~~~~d~---~~~-----~~~~~~~D~v~~~~~l~~~----~~-~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 92 NDRIQIVQGDV---HNI-----PIEDNYADLIVSRGSVFFW----ED-VATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TTTEEEEECBT---TBC-----SSCTTCEEEEEEESCGGGC----SC-HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCceEEEEcCH---HHC-----CCCcccccEEEECchHhhc----cC-HHHHHHHHHHhCCCCCEEEEE
Confidence 3 66654322 222 1223333344455677887 22 34566655 668998665553
No 15
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=88.59 E-value=2.4 Score=42.78 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 214 QAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 214 qAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
..|++.+.+ ...-+|+|+|-+.|.- ...|+.+- |.+++|+++.| ..++ .|+.. -
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~----~~~l~~~~-----p~~~~~~~D~~-------~~~~--------~a~~~-~ 244 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGAT----VAAIAAHY-----PTIKGVNFDLP-------HVIS--------EAPQF-P 244 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHH----HHHHHHHC-----TTCEEEEEECH-------HHHT--------TCCCC-T
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHH----HHHHHHHC-----CCCeEEEecCH-------HHHH--------hhhhc-C
Confidence 346666653 3467999999999864 44454443 57899999743 1111 12211 2
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeec
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEE 360 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~e 360 (495)
..+|..- +..+ + +..+++++. ...||++.. .....+|+.+ +.|+|.- ++++|.-
T Consensus 245 ~v~~~~~---D~~~--~----~p~~D~v~~--~~vlh~~~d---~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 245 GVTHVGG---DMFK--E----VPSGDTILM--KWILHDWSD---QHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp TEEEEEC---CTTT--C----CCCCSEEEE--ESCGGGSCH---HHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CeEEEeC---CcCC--C----CCCCCEEEe--hHHhccCCH---HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3555442 1211 1 112355544 345788732 3456778877 5589974 4455543
No 16
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=88.49 E-value=1.9 Score=43.49 Aligned_cols=115 Identities=19% Similarity=0.208 Sum_probs=63.6
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ- 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv- 292 (495)
..|++.+.-.+..+|+|+|-+.|. +...|+.+. |.+++|+++. ...++...++ ++..|+
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~-------~~~~~~a~~~----~~~~~l~ 251 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGS----LMAAVLDAF-----PGLRGTLLER-------PPVAEEAREL----LTGRGLA 251 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSH----HHHHHHHHC-----TTCEEEEEEC-------HHHHHHHHHH----HHHTTCT
T ss_pred HHHHHhCCCccCcEEEEeCCCccH----HHHHHHHHC-----CCCeEEEEcC-------HHHHHHHHHh----hhhcCcC
Confidence 446666554567899999999996 455555552 4689999963 2234444333 334454
Q ss_pred -CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeecC
Q 011012 293 -PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEET 361 (495)
Q Consensus 293 -pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ea 361 (495)
..+|..... .+.+ +. .-++++. ...||++.. .....+|+.+ +.|+|.- ++++|.-.
T Consensus 252 ~~v~~~~~d~--~~~~-p~-----~~D~v~~--~~vlh~~~d---~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 252 DRCEILPGDF--FETI-PD-----GADVYLI--KHVLHDWDD---DDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp TTEEEEECCT--TTCC-CS-----SCSEEEE--ESCGGGSCH---HHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred CceEEeccCC--CCCC-CC-----CceEEEh--hhhhccCCH---HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 366665321 1111 11 1234433 345677732 2344677777 5589974 44445433
No 17
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=88.27 E-value=12 Score=34.96 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=61.2
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP- 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp- 293 (495)
.|++.+.-...-+|+|+|.|.|. +...|+.+. + ++|||+. +...++... +.++..|++
T Consensus 28 ~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~-----~--~v~gvD~------s~~~l~~a~----~~~~~~~~~~ 86 (260)
T 1vl5_A 28 KLMQIAALKGNEEVLDVATGGGH----VANAFAPFV-----K--KVVAFDL------TEDILKVAR----AFIEGNGHQQ 86 (260)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCH----HHHHHGGGS-----S--EEEEEES------CHHHHHHHH----HHHHHTTCCS
T ss_pred HHHHHhCCCCCCEEEEEeCCCCH----HHHHHHHhC-----C--EEEEEeC------CHHHHHHHH----HHHHhcCCCc
Confidence 34444544455689999998885 556676652 2 7999974 333444433 334445654
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++|.... .+++ .+.++..=+|-|.+.|||+. +. ..+|+.+ |-|+|.-.+++
T Consensus 87 v~~~~~d---~~~l-----~~~~~~fD~V~~~~~l~~~~----d~-~~~l~~~~r~LkpgG~l~~ 138 (260)
T 1vl5_A 87 VEYVQGD---AEQM-----PFTDERFHIVTCRIAAHHFP----NP-ASFVSEAYRVLKKGGQLLL 138 (260)
T ss_dssp EEEEECC---C-CC-----CSCTTCEEEEEEESCGGGCS----CH-HHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEec---HHhC-----CCCCCCEEEEEEhhhhHhcC----CH-HHHHHHHHHHcCCCCEEEE
Confidence 6665432 2222 12233333455667788883 33 3555554 67999855544
No 18
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=88.04 E-value=5.6 Score=35.93 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=64.7
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.|++.+.-...-.|+|+|.|.|.--..|.+.. + |..++|||+. +...++.+.++ ++..|++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------~--~~~~v~~vD~------s~~~~~~a~~~----~~~~~~~ 88 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMV------G--EKGKVYAIDV------QEEMVNYAWEK----VNKLGLK 88 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHH------T--TTCEEEEEES------CHHHHHHHHHH----HHHHTCT
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHh------C--CCcEEEEEEC------CHHHHHHHHHH----HHHcCCC
Confidence 566677655556689999999987544444433 2 4578999974 33444444443 3445664
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++|.... .+++ ....+..=+|-|...|||+. + ...+|+.+ +.|+|.-++++
T Consensus 89 ~~~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~LkpgG~l~i 141 (219)
T 3dh0_A 89 NVEVLKSE---ENKI-----PLPDNTVDFIFMAFTFHELS----E-PLKFLEELKRVAKPFAYLAI 141 (219)
T ss_dssp TEEEEECB---TTBC-----SSCSSCEEEEEEESCGGGCS----S-HHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEEecc---cccC-----CCCCCCeeEEEeehhhhhcC----C-HHHHHHHHHHHhCCCeEEEE
Confidence 6665432 2222 12233333455556778872 2 34566655 66999755544
No 19
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=87.79 E-value=4.9 Score=37.28 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=69.6
Q ss_pred HHHHHhhccCCccchhhhhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCC
Q 011012 193 AAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRS 272 (495)
Q Consensus 193 ~Af~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~ 272 (495)
..|+.++.. .++.-+....-+.|++.+.-...-+|+|+|.|.|.- ...|+.+. + .++|||+. +
T Consensus 25 ~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~----~~~l~~~~-~-----~~v~~vD~------s 87 (266)
T 3ujc_A 25 KVYEFIFGE-NYISSGGLEATKKILSDIELNENSKVLDIGSGLGGG----CMYINEKY-G-----AHTHGIDI------C 87 (266)
T ss_dssp HHHHHHHCT-TCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHH----HHHHHHHH-C-----CEEEEEES------C
T ss_pred HHHHHHhCC-CccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHH----HHHHHHHc-C-----CEEEEEeC------C
Confidence 334444432 444445555567777777655667999999998853 34444432 2 47999974 2
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCC
Q 011012 273 ISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNP 351 (495)
Q Consensus 273 ~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~P 351 (495)
...++...+++.+. -..+|.... .+++ ....+..=+|-|...|||+. +.....+|+.+ +-|+|
T Consensus 88 ~~~~~~a~~~~~~~-----~~~~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~---~~~~~~~l~~~~~~L~p 151 (266)
T 3ujc_A 88 SNIVNMANERVSGN-----NKIIFEAND---ILTK-----EFPENNFDLIYSRDAILALS---LENKNKLFQKCYKWLKP 151 (266)
T ss_dssp HHHHHHHHHTCCSC-----TTEEEEECC---TTTC-----CCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHhhcC-----CCeEEEECc---cccC-----CCCCCcEEEEeHHHHHHhcC---hHHHHHHHHHHHHHcCC
Confidence 22333222221111 345554322 2222 12233333555566788883 23456677666 56899
Q ss_pred cEEEEE
Q 011012 352 RLVTLV 357 (495)
Q Consensus 352 kvvtlv 357 (495)
.-.+++
T Consensus 152 gG~l~~ 157 (266)
T 3ujc_A 152 TGTLLI 157 (266)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 744443
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=86.83 E-value=5.4 Score=36.06 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=30.7
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
.-..+++.+...+.-.|+|+|.|.|. +...|+.+ | .++|||+.
T Consensus 33 ~~~~~l~~~~~~~~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~~vD~ 75 (220)
T 3hnr_A 33 HYEDILEDVVNKSFGNVLEFGVGTGN----LTNKLLLA--G-----RTVYGIEP 75 (220)
T ss_dssp THHHHHHHHHHTCCSEEEEECCTTSH----HHHHHHHT--T-----CEEEEECS
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCH----HHHHHHhC--C-----CeEEEEeC
Confidence 33567777766677799999999984 55556665 2 37999963
No 21
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=86.26 E-value=12 Score=34.94 Aligned_cols=127 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ- 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv- 292 (495)
..|++.+.-.+.-+|+|+|.|.|.-- ..|+.+- | |..++|||+.......+...++...+++ +..|+
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~----~~l~~~~-g---~~~~v~gvD~s~~~~~~~~~~~~a~~~~----~~~~~~ 100 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLS----AVLADQV-G---SSGHVTGIDIASPDYGAPLTLGQAWNHL----LAGPLG 100 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHH----HHHHHHH-C---TTCEEEEECSSCTTCCSSSCHHHHHHHH----HTSTTG
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHH----HHHHHHh-C---CCCEEEEEECCccccccHHHHHHHHHHH----HhcCCC
Confidence 35566665445568999999888533 3444432 3 3578999975321000011234433333 34454
Q ss_pred -CeEEeeeecCCccccccccccccCC--ceEEEeecccCCccccCCCchHHHHHHHhhhcCC--cEEEEEeecCCCC
Q 011012 293 -PFSFHQCRLDSDETFKASALKLVRG--EALIINCMLHLPHFSYRAPDSIASFLSGAKTLNP--RLVTLVEEETGPI 364 (495)
Q Consensus 293 -pFeF~~v~~~~~e~l~~~~L~l~~g--EaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~P--kvvtlvE~ea~~n 364 (495)
..+|... + ++....+...++ ++|+ |...|||+. ++ ..+++.++.|.| ..+++.+.....+
T Consensus 101 ~~v~~~~~--d---~~~~~~~~~~~~~fD~v~--~~~~l~~~~----~~-~~~~~~~~~l~~~gG~l~~~~~~~~~~ 165 (275)
T 3bkx_A 101 DRLTVHFN--T---NLSDDLGPIADQHFDRVV--LAHSLWYFA----SA-NALALLFKNMAAVCDHVDVAEWSMQPT 165 (275)
T ss_dssp GGEEEECS--C---CTTTCCGGGTTCCCSEEE--EESCGGGSS----CH-HHHHHHHHHHTTTCSEEEEEEECSSCS
T ss_pred CceEEEEC--C---hhhhccCCCCCCCEEEEE--EccchhhCC----CH-HHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 3555432 2 111112222222 3444 445568873 22 348888998887 3566666554433
No 22
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=86.10 E-value=4.9 Score=38.62 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=61.6
Q ss_pred CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecC
Q 011012 223 DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLD 302 (495)
Q Consensus 223 ~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~ 302 (495)
....+|+|+|-|-|.--..+++.|+.+. |. -.+.+|||+. +..-++...+++.+...--++.|+|....
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~--~~-~~v~~~~vD~------S~~ml~~a~~~~~~~~~~~~v~~~~~~~~-- 119 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQY--PG-VCINNEVVEP------SAEQIAKYKELVAKTSNLENVKFAWHKET-- 119 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHS--TT-CEEEEEEECS------CHHHHHHHHHHHHTCSSCTTEEEEEECSC--
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhC--CC-ceeeEEEEeC------CHHHHHHHHHHHHhccCCCcceEEEEecc--
Confidence 4567999999999954445777777653 20 1334599963 34445544444321100013445554322
Q ss_pred Ccccccccc-ccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SDETFKASA-LKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~e~l~~~~-L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+++.... ....++..=+|-|...|||+. + ...+|+.+ |-|+|.-.+++
T Consensus 120 -~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~----d-~~~~l~~~~r~LkpgG~l~i 170 (292)
T 2aot_A 120 -SSEYQSRMLEKKELQKWDFIHMIQMLYYVK----D-IPATLKFFHSLLGTNAKMLI 170 (292)
T ss_dssp -HHHHHHHHHTTTCCCCEEEEEEESCGGGCS----C-HHHHHHHHHHTEEEEEEEEE
T ss_pred -hhhhhhhhccccCCCceeEEEEeeeeeecC----C-HHHHHHHHHHHcCCCcEEEE
Confidence 22221000 001223344666777899983 2 35667666 45799854443
No 23
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=86.03 E-value=6.5 Score=37.39 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=66.2
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.+.+++.+...+.-+|+|+|-|.|. +...|+.+ | .++|||+. +...++.+ .+.++..|+
T Consensus 109 ~~~~~~~~~~~~~~~vLD~GcG~G~----~~~~l~~~--g-----~~v~~vD~------s~~~~~~a----~~~~~~~~~ 167 (286)
T 3m70_A 109 HGDVVDAAKIISPCKVLDLGCGQGR----NSLYLSLL--G-----YDVTSWDH------NENSIAFL----NETKEKENL 167 (286)
T ss_dssp CHHHHHHHHHSCSCEEEEESCTTCH----HHHHHHHT--T-----CEEEEEES------CHHHHHHH----HHHHHHTTC
T ss_pred HHHHHHHhhccCCCcEEEECCCCCH----HHHHHHHC--C-----CeEEEEEC------CHHHHHHH----HHHHHHcCC
Confidence 3466677665567789999999986 45556665 3 37999974 23334433 344555677
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+|.... ..++.. .+..=+|-|...|||+. +..+..+|+.+ +.|+|.-++++
T Consensus 168 ~~~~~~~d---~~~~~~------~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 168 NISTALYD---INAANI------QENYDFIVSTVVFMFLN---RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp CEEEEECC---GGGCCC------CSCEEEEEECSSGGGSC---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEEec---cccccc------cCCccEEEEccchhhCC---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 66665432 222221 23222344445678873 24466777776 56899865433
No 24
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=85.02 E-value=6.2 Score=36.54 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=56.8
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.+++.+.....-+|+|+|.|.|.--..|.+.+ | ..++|||+. +...++...++ .-..
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~---~~~v~~~D~------s~~~~~~a~~~--------~~~~ 80 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY------G---VNVITGIDS------DDDMLEKAADR--------LPNT 80 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH------C---TTSEEEEES------CHHHHHHHHHH--------STTS
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC------C---CCEEEEEEC------CHHHHHHHHHh--------CCCc
Confidence 34444443445579999999887555555443 1 246899973 23333333222 2234
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+|.... .+++. .++..=+|-|...|||+. + ...+|+.+ +.|+|.-.+++.
T Consensus 81 ~~~~~d---~~~~~------~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 81 NFGKAD---LATWK------PAQKADLLYANAVFQWVP----D-HLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp EEEECC---TTTCC------CSSCEEEEEEESCGGGST----T-HHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEECC---hhhcC------ccCCcCEEEEeCchhhCC----C-HHHHHHHHHHhcCCCeEEEEE
Confidence 554332 22222 122222444556788872 2 45566665 779998555443
No 25
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=84.13 E-value=11 Score=36.53 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHhHhhhh-cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 214 QAILEAVA-NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 214 qAILEA~~-g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
+.|++.+. -...-+|+|+|.|.|. +...|+.+. | .++|||+. +...++. ..+.++..|+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~----~~~~la~~~-~-----~~v~gvD~------s~~~~~~----a~~~~~~~~~ 165 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGG----SMVMAHRRF-G-----SRVEGVTL------SAAQADF----GNRRARELRI 165 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSH----HHHHHHHHH-C-----CEEEEEES------CHHHHHH----HHHHHHHTTC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCH----HHHHHHHHc-C-----CEEEEEeC------CHHHHHH----HHHHHHHcCC
Confidence 34666665 2345689999998884 334455442 2 46999963 2333433 3444556676
Q ss_pred C--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 P--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 p--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+ .+|.... .+++. ..++..=+|-|...|||+ . ...+|+.+ +-|+|.-.+++
T Consensus 166 ~~~v~~~~~d---~~~~~-----~~~~~fD~V~~~~~l~~~-~-----~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 166 DDHVRSRVCN---MLDTP-----FDKGAVTASWNNESTMYV-D-----LHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp TTTEEEEECC---TTSCC-----CCTTCEEEEEEESCGGGS-C-----HHHHHHHHHHHEEEEEEEEE
T ss_pred CCceEEEECC---hhcCC-----CCCCCEeEEEECCchhhC-C-----HHHHHHHHHHHcCCCcEEEE
Confidence 5 6765432 22221 222333344455667887 1 45666665 66999744443
No 26
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=83.89 E-value=24 Score=33.48 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHhHhhh----hcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHH
Q 011012 214 QAILEAV----ANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAAS 289 (495)
Q Consensus 214 qAILEA~----~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~s 289 (495)
..|++.+ .-...-+|+|+|.|.|..-..|.+.+ | .++|||+. +...++...++ ++.
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~-----~~v~gvD~------s~~~~~~a~~~----~~~ 127 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-----G-----VSIDCLNI------APVQNKRNEEY----NNQ 127 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-----C-----CEEEEEES------CHHHHHHHHHH----HHH
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-----C-----CEEEEEeC------CHHHHHHHHHH----HHh
Confidence 3455555 22345689999999887554444433 1 37999964 23344443333 344
Q ss_pred cCCC--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEE-EEEeec
Q 011012 290 IGQP--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLV-TLVEEE 360 (495)
Q Consensus 290 lgvp--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvv-tlvE~e 360 (495)
.|++ ++|.... .+++ .+.++..=+|-|...|||+. + ...+|+.+ |-|+|.-. ++++..
T Consensus 128 ~~~~~~~~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 128 AGLADNITVKYGS---FLEI-----PCEDNSYDFIWSQDAFLHSP----D-KLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp HTCTTTEEEEECC---TTSC-----SSCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCcceEEEEcC---cccC-----CCCCCCEeEEEecchhhhcC----C-HHHHHHHHHHHcCCCeEEEEEEec
Confidence 4553 6665432 2222 22234444555667788883 2 45666665 66899744 344433
No 27
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=83.70 E-value=9.3 Score=34.57 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=63.7
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-- 292 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-- 292 (495)
.|++.+...+.-.|+|+|.|.|. +...|+.+. |..++|||+. +...++.+.+++ +..|+
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~------s~~~~~~a~~~~----~~~~~~~ 80 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGN----LLKILLKDS-----FFEQITGVDV------SYRSLEIAQERL----DRLRLPR 80 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCH----HHHHHHHCT-----TCSEEEEEES------CHHHHHHHHHHH----TTCCCCH
T ss_pred HHHHHHHhcCCCEEEEeCCCCCH----HHHHHHhhC-----CCCEEEEEEC------CHHHHHHHHHHH----HHhcCCc
Confidence 34444444455689999999885 455566652 3468999974 334444443332 33344
Q ss_pred ----CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEee
Q 011012 293 ----PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEE 359 (495)
Q Consensus 293 ----pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ 359 (495)
.++|.... ++.+.. ....=++++ |...|||+. +..+..+|+.+ +.|+|.-++++..
T Consensus 81 ~~~~~v~~~~~d---~~~~~~---~~~~fD~v~--~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 81 NQWERLQLIQGA---LTYQDK---RFHGYDAAT--VIEVIEHLD---LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp HHHTTEEEEECC---TTSCCG---GGCSCSEEE--EESCGGGCC---HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccCcceEEEeCC---cccccc---cCCCcCEEe--eHHHHHcCC---HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 35555432 211111 111123444 455678882 23456778776 5589998776643
No 28
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=83.38 E-value=5.2 Score=40.28 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=59.0
Q ss_pred HHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 214 QAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 214 qAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
..|++.+.+ ...-+|+|+|-|.|. +...|+.+- |.+++|+++.| ..++ .|+.. -
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~~-------~~~~--------~a~~~-~ 246 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGA----VASMIVAKY-----PSINAINFDLP-------HVIQ--------DAPAF-S 246 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSH----HHHHHHHHC-----TTCEEEEEECH-------HHHT--------TCCCC-T
T ss_pred HHHHHhcccccCCCEEEEeCCCcCH----HHHHHHHhC-----CCCEEEEEehH-------HHHH--------hhhhc-C
Confidence 345666552 345799999999986 444555543 57899999742 1111 12211 1
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeec
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEE 360 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~e 360 (495)
..+|..- +..+ + + ..+++++.+ ..||++.. .....+|+.+ +.|+|.- ++++|.-
T Consensus 247 ~v~~~~~---d~~~--~--~--p~~D~v~~~--~vlh~~~~---~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 247 GVEHLGG---DMFD--G--V--PKGDAIFIK--WICHDWSD---EHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp TEEEEEC---CTTT--C--C--CCCSEEEEE--SCGGGBCH---HHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCEEEec---CCCC--C--C--CCCCEEEEe--chhhcCCH---HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3555432 1211 1 1 123555444 35788732 3455778877 5689974 4555543
No 29
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=83.34 E-value=5.9 Score=35.92 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=65.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ- 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv- 292 (495)
+.|++.+...+.-.|+|+|.+.|. +...|+.+. |..++|||+. +...++...+++ +..++
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~------s~~~~~~a~~~~----~~~~~~ 79 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGN----LLSLLLKDK-----SFEQITGVDV------SYSVLERAKDRL----KIDRLP 79 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCH----HHHHHHTST-----TCCEEEEEES------CHHHHHHHHHHH----TGGGSC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCH----HHHHHHhcC-----CCCEEEEEEC------CHHHHHHHHHHH----Hhhccc
Confidence 445555554555689999999886 556666652 3579999974 334444444443 22233
Q ss_pred -----CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEeecCC
Q 011012 293 -----PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEEETG 362 (495)
Q Consensus 293 -----pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ea~ 362 (495)
.++|.... ++.+.. ....=++|+ |...|||+. +..+..+|+.+ +.|+|.-++++.....
T Consensus 80 ~~~~~~v~~~~~d---~~~~~~---~~~~fD~V~--~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 144 (219)
T 3jwg_A 80 EMQRKRISLFQSS---LVYRDK---RFSGYDAAT--VIEVIEHLD---ENRLQAFEKVLFEFTRPQTVIVSTPNKE 144 (219)
T ss_dssp HHHHTTEEEEECC---SSSCCG---GGTTCSEEE--EESCGGGCC---HHHHHHHHHHHHTTTCCSEEEEEEEBGG
T ss_pred cccCcceEEEeCc---cccccc---ccCCCCEEE--EHHHHHhCC---HHHHHHHHHHHHHhhCCCEEEEEccchh
Confidence 35554322 221111 011112333 556688882 22346777766 6689998777655543
No 30
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=83.13 E-value=13 Score=35.56 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=62.0
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP- 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp- 293 (495)
.|++.+.-...-+|+|+|.|.|. +...|+.+. + .++|||+. +...++.+.+ .++..|++
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~-~~v~gvD~------s~~~~~~a~~----~~~~~~~~~ 122 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGS----TMRHAVAEY-----D-VNVIGLTL------SENQYAHDKA----MFDEVDSPR 122 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSH----HHHHHHHHH-----C-CEEEEEEC------CHHHHHHHHH----HHHHSCCSS
T ss_pred HHHHHcCCCCcCEEEEeeccCcH----HHHHHHHhC-----C-CEEEEEEC------CHHHHHHHHH----HHHhcCCCC
Confidence 35555544555689999988775 344444442 1 46999963 3334444333 34556765
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccC----CCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYR----APDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~----~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+|... +.+++ . ..=++|+. ...+||+... .......+|+.+ +-|+|.-.+++
T Consensus 123 ~v~~~~~---d~~~~-~-----~~fD~v~~--~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 181 (302)
T 3hem_A 123 RKEVRIQ---GWEEF-D-----EPVDRIVS--LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL 181 (302)
T ss_dssp CEEEEEC---CGGGC-C-----CCCSEEEE--ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred ceEEEEC---CHHHc-C-----CCccEEEE--cchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 555432 23333 1 11134443 3567888432 224556777776 56999855544
No 31
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=81.53 E-value=9.8 Score=36.73 Aligned_cols=106 Identities=8% Similarity=-0.025 Sum_probs=58.3
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeec
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRL 301 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~ 301 (495)
..-+|+|+|.|.|. +...|+.+. . |..++|||+. +...++.+ .+.++..|++ .+|....
T Consensus 118 ~~~~vLDiGcG~G~----~~~~la~~~-~---~~~~v~gvD~------s~~~~~~a----~~~~~~~~~~~~v~~~~~d- 178 (305)
T 3ocj_A 118 PGCVVASVPCGWMS----ELLALDYSA-C---PGVQLVGIDY------DPEALDGA----TRLAAGHALAGQITLHRQD- 178 (305)
T ss_dssp TTCEEEETTCTTCH----HHHTSCCTT-C---TTCEEEEEES------CHHHHHHH----HHHHTTSTTGGGEEEEECC-
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-C---CCCeEEEEEC------CHHHHHHH----HHHHHhcCCCCceEEEECc-
Confidence 34579999999884 334444222 2 4689999974 23344443 3334555665 6665432
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
..++. .. +..=+|-|...+||+.. +.....+|+.+ +.|+|.-.+++.
T Consensus 179 --~~~~~-----~~-~~fD~v~~~~~~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~ 226 (305)
T 3ocj_A 179 --AWKLD-----TR-EGYDLLTSNGLNIYEPD--DARVTELYRRFWQALKPGGALVTS 226 (305)
T ss_dssp --GGGCC-----CC-SCEEEEECCSSGGGCCC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --hhcCC-----cc-CCeEEEEECChhhhcCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 22221 11 32334445556777732 23334577776 569998766663
No 32
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=81.40 E-value=32 Score=32.08 Aligned_cols=115 Identities=14% Similarity=-0.042 Sum_probs=64.8
Q ss_pred hhhhhHHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHH
Q 011012 209 HFTANQAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFA 287 (495)
Q Consensus 209 hftANqAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA 287 (495)
+...-..+++.+.+ ...-+|+|+|.|.|. +...|+.++ ..++|||+. +...++.+ .+.+
T Consensus 30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~----~~~~la~~~------~~~v~gvD~------s~~~~~~a----~~~~ 89 (267)
T 3kkz_A 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGG----QTMVLAGHV------TGQVTGLDF------LSGFIDIF----NRNA 89 (267)
T ss_dssp CHHHHHHHHTTCCCCCTTCEEEEETCTTCH----HHHHHHTTC------SSEEEEEES------CHHHHHHH----HHHH
T ss_pred CHHHHHHHHHhcccCCCCCEEEEeCCCCCH----HHHHHHhcc------CCEEEEEeC------CHHHHHHH----HHHH
Confidence 33334445555542 335689999998774 556677762 358999974 33344443 3445
Q ss_pred HHcCCC--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 288 ASIGQP--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 288 ~slgvp--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+..|++ .+|.... .+++. ...+..=+|-|...+||+ . ...+|+.+ +-|+|.-++++
T Consensus 90 ~~~~~~~~v~~~~~d---~~~~~-----~~~~~fD~i~~~~~~~~~-~-----~~~~l~~~~~~LkpgG~l~~ 148 (267)
T 3kkz_A 90 RQSGLQNRVTGIVGS---MDDLP-----FRNEELDLIWSEGAIYNI-G-----FERGLNEWRKYLKKGGYLAV 148 (267)
T ss_dssp HHTTCTTTEEEEECC---TTSCC-----CCTTCEEEEEESSCGGGT-C-----HHHHHHHHGGGEEEEEEEEE
T ss_pred HHcCCCcCcEEEEcC---hhhCC-----CCCCCEEEEEEcCCceec-C-----HHHHHHHHHHHcCCCCEEEE
Confidence 566775 7775432 22222 223333455566667887 1 24566665 66999855544
No 33
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=81.01 E-value=12 Score=34.74 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=62.6
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
-+.|++.+...+.-.|+|+|.|.|. +...|+.+ |+ . ++|||+. +...++.+.+++. +.
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~----~~~~l~~~--~~---~-~v~~vD~------s~~~~~~a~~~~~------~~ 90 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGW----HCIYAAEH--GA---K-KVLGIDL------SERMLTEAKRKTT------SP 90 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCH----HHHHHHHT--TC---S-EEEEEES------CHHHHHHHHHHCC------CT
T ss_pred HHHHHHhhhccCCCEEEEECCCCCH----HHHHHHHc--CC---C-EEEEEEC------CHHHHHHHHHhhc------cC
Confidence 3455666655566789999999984 55566665 33 3 8999974 2333333322222 33
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
..+|.... .+++ ....+..=+|-|...|||+. + ...+|+.+ +.|+|.-++++.
T Consensus 91 ~~~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 91 VVCYEQKA---IEDI-----AIEPDAYNVVLSSLALHYIA----S-FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp TEEEEECC---GGGC-----CCCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEEEcc---hhhC-----CCCCCCeEEEEEchhhhhhh----h-HHHHHHHHHHHcCCCcEEEEE
Confidence 45554422 2222 22234333555556788882 2 45677666 559998666653
No 34
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=80.71 E-value=15 Score=32.29 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=60.9
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
++.|++.+...+.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++...++ ++..++
T Consensus 21 ~~~l~~~~~~~~~~~vLdiG~G~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~~a~~~----~~~~~~ 79 (199)
T 2xvm_A 21 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G-----YDVDAWDK------NAMSIANVERI----KSIENL 79 (199)
T ss_dssp CHHHHHHTTTSCSCEEEEETCTTSH----HHHHHHHT--T-----CEEEEEES------CHHHHHHHHHH----HHHHTC
T ss_pred cHHHHHHhhccCCCeEEEEcCCCCH----HHHHHHHC--C-----CeEEEEEC------CHHHHHHHHHH----HHhCCC
Confidence 3456666655455599999999886 34455655 2 37999964 23344443333 334455
Q ss_pred -CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE
Q 011012 293 -PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT 355 (495)
Q Consensus 293 -pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt 355 (495)
..+|.... ..++. . ++..=+|-|...+||+. +.....+|+.+ +.|+|.-.+
T Consensus 80 ~~~~~~~~d---~~~~~-----~-~~~~D~v~~~~~l~~~~---~~~~~~~l~~~~~~L~~gG~l 132 (199)
T 2xvm_A 80 DNLHTRVVD---LNNLT-----F-DRQYDFILSTVVLMFLE---AKTIPGLIANMQRCTKPGGYN 132 (199)
T ss_dssp TTEEEEECC---GGGCC-----C-CCCEEEEEEESCGGGSC---GGGHHHHHHHHHHTEEEEEEE
T ss_pred CCcEEEEcc---hhhCC-----C-CCCceEEEEcchhhhCC---HHHHHHHHHHHHHhcCCCeEE
Confidence 45655432 22221 1 22222333445678873 23456677776 668998553
No 35
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=80.08 E-value=22 Score=32.73 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=60.6
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
-..|++.+.-...-+|+|+|.|.|.. ...|+.+. | .++|||+. +...++.. .+.++..|+
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~----~~~la~~~-~-----~~v~gvD~------s~~~l~~a----~~~~~~~~~ 84 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEM----LCTWARDH-G-----ITGTGIDM------SSLFTAQA----KRRAEELGV 84 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHH----HHHHHHHT-C-----CEEEEEES------CHHHHHHH----HHHHHHTTC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHH----HHHHHHhc-C-----CeEEEEeC------CHHHHHHH----HHHHHhcCC
Confidence 34455555434455899999999873 33444443 2 25799964 23334433 344555676
Q ss_pred C--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 P--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 p--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+ .+|.... .+++.. ++..=+|-|...+||+. + ...+|+.+ |-|+|.-.+++
T Consensus 85 ~~~v~~~~~d---~~~~~~------~~~fD~V~~~~~~~~~~----~-~~~~l~~~~r~LkpgG~l~~ 138 (256)
T 1nkv_A 85 SERVHFIHND---AAGYVA------NEKCDVAACVGATWIAG----G-FAGAEELLAQSLKPGGIMLI 138 (256)
T ss_dssp TTTEEEEESC---CTTCCC------SSCEEEEEEESCGGGTS----S-SHHHHHHHTTSEEEEEEEEE
T ss_pred CcceEEEECC---hHhCCc------CCCCCEEEECCChHhcC----C-HHHHHHHHHHHcCCCeEEEE
Confidence 4 7776532 222221 22232444556678873 2 34566665 56899854444
No 36
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=79.46 E-value=15 Score=32.95 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=61.4
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeE
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFS 295 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFe 295 (495)
|.+.+...+.-+|+|+|.|.|. +...|+.+ + -++|||+. +...++.+.+++.+ .+ .++
T Consensus 43 l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~~a~~~~~~----~~-~~~ 100 (216)
T 3ofk_A 43 LRLSLSSGAVSNGLEIGCAAGA----FTEKLAPH--C-----KRLTVIDV------MPRAIGRACQRTKR----WS-HIS 100 (216)
T ss_dssp HHHHTTTSSEEEEEEECCTTSH----HHHHHGGG--E-----EEEEEEES------CHHHHHHHHHHTTT----CS-SEE
T ss_pred HHHHcccCCCCcEEEEcCCCCH----HHHHHHHc--C-----CEEEEEEC------CHHHHHHHHHhccc----CC-CeE
Confidence 3334455567899999999984 45556655 2 47999974 33344444333322 22 455
Q ss_pred EeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 296 FHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 296 F~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
|.... .+++. .++..=+|-|...|||+.. +..+..+|+.+ +.|+|.-++++
T Consensus 101 ~~~~d---~~~~~------~~~~fD~v~~~~~l~~~~~--~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 101 WAATD---ILQFS------TAELFDLIVVAEVLYYLED--MTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp EEECC---TTTCC------CSCCEEEEEEESCGGGSSS--HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEcc---hhhCC------CCCCccEEEEccHHHhCCC--HHHHHHHHHHHHHHcCCCCEEEE
Confidence 55432 22222 1233334555567888832 23455666665 66999866655
No 37
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=79.15 E-value=18 Score=32.55 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=54.4
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|. +...|+.+ + + ++|||+. +...++.+.++ ++..+...+|.... .
T Consensus 39 ~~~vLDlG~G~G~----~~~~l~~~--~---~--~v~~vD~------s~~~~~~a~~~----~~~~~~~~~~~~~d---~ 94 (227)
T 1ve3_A 39 RGKVLDLACGVGG----FSFLLEDY--G---F--EVVGVDI------SEDMIRKAREY----AKSRESNVEFIVGD---A 94 (227)
T ss_dssp CCEEEEETCTTSH----HHHHHHHT--T---C--EEEEEES------CHHHHHHHHHH----HHHTTCCCEEEECC---T
T ss_pred CCeEEEEeccCCH----HHHHHHHc--C---C--EEEEEEC------CHHHHHHHHHH----HHhcCCCceEEECc---h
Confidence 4589999999884 44556665 3 3 8999963 23344443333 33344455665432 2
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.++. +.-..=+.|+.|..+.+++. .....+|+.+ +.|+|.-++++
T Consensus 95 ~~~~---~~~~~~D~v~~~~~~~~~~~-----~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 95 RKLS---FEDKTFDYVIFIDSIVHFEP-----LELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp TSCC---SCTTCEEEEEEESCGGGCCH-----HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCC---CCCCcEEEEEEcCchHhCCH-----HHHHHHHHHHHHHcCCCcEEEE
Confidence 2221 11111245666655545554 2345566665 66899855544
No 38
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=78.87 E-value=3.2 Score=41.22 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
..|++.+.-.+.-+|+|+|-|.|. +...|+.+- |.+++|+++.
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~ 216 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGG----FLLTVLREH-----PGLQGVLLDR 216 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSH----HHHHHHHHC-----TTEEEEEEEC
T ss_pred HHHHHhCCccCCceEEEECCccCH----HHHHHHHHC-----CCCEEEEecC
Confidence 356666654567899999999985 344555442 4789999974
No 39
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=77.56 E-value=13 Score=35.88 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=68.6
Q ss_pred hhccCCccchhhhhhhHHhHhh----hhcC-CeeEEEEccccC---ccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCC
Q 011012 198 LQDMSPYVKFGHFTANQAILEA----VAND-RRVHIVDYDIME---GIQWASLMQALVSRKDGPPAPHLRITALSRGGSG 269 (495)
Q Consensus 198 f~e~sP~~kfahftANqAILEA----~~g~-~~VHIVDf~I~~---G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~ 269 (495)
+.++.|-+. ....+|+..++. +... ..-+|+|+|-|. |. .. +.+..+ . |..|||+|+.
T Consensus 47 ~~~~~p~~~-~~a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~-~~---~~~~~~--~---p~~~v~~vD~---- 112 (274)
T 2qe6_A 47 ACKHIPGLK-ESAIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQN-TH---EVAQSV--N---PDARVVYVDI---- 112 (274)
T ss_dssp HHHHSTTHH-HHHHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSC-HH---HHHHHH--C---TTCEEEEEES----
T ss_pred HHHhcchhH-HHHHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCCh-HH---HHHHHh--C---CCCEEEEEEC----
Confidence 444445433 223455555443 3322 234899999998 73 33 333332 1 3579999974
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcccc-c-c---ccccccCCceEEEeecccCCccccCCCchHHHHHH
Q 011012 270 RRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETF-K-A---SALKLVRGEALIINCMLHLPHFSYRAPDSIASFLS 344 (495)
Q Consensus 270 ~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l-~-~---~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~ 344 (495)
+...++...+++.. .-..+|....+...+.+ . + ..+. .+...+|-+...|||+.. .....+|+
T Consensus 113 --sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~~~d--~~~~d~v~~~~vlh~~~d---~~~~~~l~ 180 (274)
T 2qe6_A 113 --DPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRRMID--FSRPAAIMLVGMLHYLSP---DVVDRVVG 180 (274)
T ss_dssp --SHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHHHCC--TTSCCEEEETTTGGGSCT---TTHHHHHH
T ss_pred --ChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhccCC--CCCCEEEEEechhhhCCc---HHHHHHHH
Confidence 33445544444421 12355554322211000 0 0 1122 234566667778999943 24667888
Q ss_pred Hhhh-cCCcEEEEE
Q 011012 345 GAKT-LNPRLVTLV 357 (495)
Q Consensus 345 ~ir~-L~Pkvvtlv 357 (495)
.+++ |+|.-.+++
T Consensus 181 ~~~~~L~pGG~l~i 194 (274)
T 2qe6_A 181 AYRDALAPGSYLFM 194 (274)
T ss_dssp HHHHHSCTTCEEEE
T ss_pred HHHHhCCCCcEEEE
Confidence 8765 999744433
No 40
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=75.70 E-value=31 Score=32.06 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|++.+.-...-+|+|+|.|.|.. ...|+.+.+ .++|||+. +...++.. .+.++..|++
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~----~~~l~~~~~------~~v~gvD~------s~~~~~~a----~~~~~~~~~~ 110 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKP----AVRLATARD------VRVTGISI------SRPQVNQA----NARATAAGLA 110 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHH----HHHHHHHSC------CEEEEEES------CHHHHHHH----HHHHHHTTCT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHH----HHHHHHhcC------CEEEEEeC------CHHHHHHH----HHHHHhcCCC
Confidence 3445555444556899999988753 344554431 47999964 23334333 3344555664
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+|.... .+++ ...++..=+|-|...|||+. + ...+|+.+ +-|+|.-.+++
T Consensus 111 ~~~~~~~~d---~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 111 NRVTFSYAD---AMDL-----PFEDASFDAVWALESLHHMP----D-RGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp TTEEEEECC---TTSC-----CSCTTCEEEEEEESCTTTSS----C-HHHHHHHHHTTEEEEEEEEE
T ss_pred cceEEEECc---cccC-----CCCCCCccEEEEechhhhCC----C-HHHHHHHHHHHcCCCeEEEE
Confidence 6665432 2222 12233333444566788883 2 25666665 56899854443
No 41
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=75.62 E-value=18 Score=35.49 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=60.1
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-------eEEe
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-------FSFH 297 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-------FeF~ 297 (495)
.-+|+|+|.|.|.- +..++.+. + -++|||+. +...++.+.+|..+ .++. ++|.
T Consensus 49 ~~~VLDlGCG~G~~----l~~~~~~~-~-----~~v~GiD~------S~~~l~~A~~~~~~----~~~~~~~~~~~~~f~ 108 (302)
T 2vdw_A 49 KRKVLAIDFGNGAD----LEKYFYGE-I-----ALLVATDP------DADAIARGNERYNK----LNSGIKTKYYKFDYI 108 (302)
T ss_dssp CCEEEETTCTTTTT----HHHHHHTT-C-----SEEEEEES------CHHHHHHHHHHHHH----HCC----CCCEEEEE
T ss_pred CCeEEEEecCCcHh----HHHHHhcC-C-----CeEEEEEC------CHHHHHHHHHHHHh----ccccccccccccchh
Confidence 45799999999852 22233332 1 36999974 44566666555432 3432 4565
Q ss_pred eeecCCcccccccccc--ccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 298 QCRLDSDETFKASALK--LVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 298 ~v~~~~~e~l~~~~L~--l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
...+... .+. ..|. ...+..=+|.|++.||++... ..+..+|+.+ +.|+|.-++++
T Consensus 109 ~~d~~~d-~~~-~~l~~~~~~~~FD~V~~~~~lhy~~~~--~~~~~~l~~~~r~LkpGG~~i~ 167 (302)
T 2vdw_A 109 QETIRSD-TFV-SSVREVFYFGKFNIIDWQFAIHYSFHP--RHYATVMNNLSELTASGGKVLI 167 (302)
T ss_dssp ECCTTSS-SHH-HHHHTTCCSSCEEEEEEESCGGGTCST--TTHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhcccc-hhh-hhhhccccCCCeeEEEECchHHHhCCH--HHHHHHHHHHHHHcCCCCEEEE
Confidence 4322110 000 1111 123444477889999987332 2456788877 66999865554
No 42
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=75.02 E-value=51 Score=30.20 Aligned_cols=121 Identities=12% Similarity=-0.036 Sum_probs=66.4
Q ss_pred CccchhhhhhhHHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHH
Q 011012 203 PYVKFGHFTANQAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGR 281 (495)
Q Consensus 203 P~~kfahftANqAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~ 281 (495)
+-..-.+......+++.+.+ ...-+|+|+|.|.|.. ...|+.+. | . ++|||+. +...++.
T Consensus 24 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~----~~~l~~~~--~---~-~v~~vD~------s~~~~~~--- 84 (257)
T 3f4k_A 24 KRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQ----TLFLADYV--K---G-QITGIDL------FPDFIEI--- 84 (257)
T ss_dssp SCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHH----HHHHHHHC--C---S-EEEEEES------CHHHHHH---
T ss_pred cccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHH----HHHHHHhC--C---C-eEEEEEC------CHHHHHH---
Confidence 33333444444555665543 2345899999998864 34444442 2 3 8999974 2333443
Q ss_pred HHHHHHHHcCCC--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 282 RLVAFAASIGQP--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 282 rL~~fA~slgvp--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+.++..|++ .+|.... .+++. ..++..=+|-|...|||+ . ...+|+.+ +-|+|.-++++
T Consensus 85 -a~~~~~~~~~~~~~~~~~~d---~~~~~-----~~~~~fD~v~~~~~l~~~-~-----~~~~l~~~~~~L~pgG~l~~ 148 (257)
T 3f4k_A 85 -FNENAVKANCADRVKGITGS---MDNLP-----FQNEELDLIWSEGAIYNI-G-----FERGMNEWSKYLKKGGFIAV 148 (257)
T ss_dssp -HHHHHHHTTCTTTEEEEECC---TTSCS-----SCTTCEEEEEEESCSCCC-C-----HHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHcCCCCceEEEECC---hhhCC-----CCCCCEEEEEecChHhhc-C-----HHHHHHHHHHHcCCCcEEEE
Confidence 34445666776 6665432 22222 223333345555668887 1 34566665 55999755544
No 43
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=74.70 E-value=5.9 Score=40.18 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=62.9
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
.|++.+.-...-.|+|+|-|.|. ++..|+.+ | .++|||+. +.. ..+.|+..|++.
T Consensus 98 ~l~~~~~~~~~~~VLDiGcG~G~----~~~~l~~~--g-----~~v~gvD~------s~~--------~~~~a~~~~~~~ 152 (416)
T 4e2x_A 98 DFLATELTGPDPFIVEIGCNDGI----MLRTIQEA--G-----VRHLGFEP------SSG--------VAAKAREKGIRV 152 (416)
T ss_dssp HHHHTTTCSSSCEEEEETCTTTT----THHHHHHT--T-----CEEEEECC------CHH--------HHHHHHTTTCCE
T ss_pred HHHHHhCCCCCCEEEEecCCCCH----HHHHHHHc--C-----CcEEEECC------CHH--------HHHHHHHcCCCc
Confidence 34555544456689999999997 56666664 2 27999963 222 334566667665
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.-.... .-....+...++..=+|-|...|||+. ....+|+.+ +-|+|.-+++++
T Consensus 153 ~~~~~~-----~~~~~~l~~~~~~fD~I~~~~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 153 RTDFFE-----KATADDVRRTEGPANVIYAANTLCHIP-----YVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp ECSCCS-----HHHHHHHHHHHCCEEEEEEESCGGGCT-----THHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeeec-----hhhHhhcccCCCCEEEEEECChHHhcC-----CHHHHHHHHHHHcCCCeEEEEE
Confidence 422111 111112222334444555667789983 245677766 568998666665
No 44
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=73.75 E-value=29 Score=29.71 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=57.2
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.+++.+.-.+.-.|+|+|.|.|. +...|+.+. . ++|||+. +...++.+.++ .-.
T Consensus 7 ~~~~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~------~-~v~~vD~------s~~~~~~a~~~--------~~~ 61 (170)
T 3i9f_A 7 EEYLPNIFEGKKGVIVDYGCGNGF----YCKYLLEFA------T-KLYCIDI------NVIALKEVKEK--------FDS 61 (170)
T ss_dssp TTTHHHHHSSCCEEEEEETCTTCT----THHHHHTTE------E-EEEEECS------CHHHHHHHHHH--------CTT
T ss_pred HHHHHhcCcCCCCeEEEECCCCCH----HHHHHHhhc------C-eEEEEeC------CHHHHHHHHHh--------CCC
Confidence 345666665667789999999886 345555542 3 8999963 23334433333 222
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+|... + +...++..=+|-|...+||+. + ...+|+.+ +.|+|.-.+++
T Consensus 62 v~~~~~--d---------~~~~~~~~D~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~~ 110 (170)
T 3i9f_A 62 VITLSD--P---------KEIPDNSVDFILFANSFHDMD----D-KQHVISEVKRILKDDGRVII 110 (170)
T ss_dssp SEEESS--G---------GGSCTTCEEEEEEESCSTTCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEeC--C---------CCCCCCceEEEEEccchhccc----C-HHHHHHHHHHhcCCCCEEEE
Confidence 333321 1 222233333444556788872 2 34566555 66899755544
No 45
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=73.72 E-value=20 Score=36.09 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=75.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
++|++...-.+.-.|+|+|-|.| .+...|+.+ |. -++|||+.. ..++ ...+.++..|++
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG----~ls~~la~~--g~----~~V~gvD~s-------~~~~----~a~~~~~~~~~~ 111 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSG----ILAIWSAQA--GA----RKVYAVEAT-------KMAD----HARALVKANNLD 111 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTT----HHHHHHHHT--TC----SEEEEEESS-------TTHH----HHHHHHHHTTCT
T ss_pred HHHHhccccCCCCEEEEeccCcC----HHHHHHHhc--CC----CEEEEEccH-------HHHH----HHHHHHHHcCCC
Confidence 34444433334567999999998 344555655 33 389999742 1222 234445666775
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEeecCCCC---CCC
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEEETGPI---GDG 367 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ea~~n---~~p 367 (495)
.+|... +.+++... .+=++|+.|.+ .|.+.. ...+..+|+.+ +-|+|.-+++...-.-+. .++
T Consensus 112 ~~v~~~~~---d~~~~~~~----~~~D~Iv~~~~--~~~l~~--e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~ 180 (376)
T 3r0q_C 112 HIVEVIEG---SVEDISLP----EKVDVIISEWM--GYFLLR--ESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSN 180 (376)
T ss_dssp TTEEEEES---CGGGCCCS----SCEEEEEECCC--BTTBTT--TCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCT
T ss_pred CeEEEEEC---chhhcCcC----CcceEEEEcCh--hhcccc--hHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecch
Confidence 666542 23333221 11234444432 333422 24577889888 889999777654322111 112
Q ss_pred ChHH---HHHHHHHHHHHHHhhhhc
Q 011012 368 GFVS---RFMDSLHHYSAVYDSLEA 389 (495)
Q Consensus 368 ~F~~---RF~eaL~yYsalFDSLda 389 (495)
.+.. .|.+.+..+..+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~W~~fw~~~~~ 205 (376)
T 3r0q_C 181 IADRKRNDFDGAMADWHNFSDEIKS 205 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhhhhhccCc
Confidence 2221 344555555566654444
No 46
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=73.46 E-value=10 Score=34.71 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhccCCccchhhhhhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCC
Q 011012 189 TDVLAAFQLLQDMSPYVKFGHFTANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGS 268 (495)
Q Consensus 189 ~~~l~Af~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~ 268 (495)
...+.++..|....++..-..-..-+.|...+...+.-+|+|+|.+.|.-= ..||.+- + +.-+||+|+.
T Consensus 23 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~----~~la~~~--~--~~~~v~~vD~--- 91 (221)
T 3u81_A 23 QSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSA----VRMARLL--Q--PGARLLTMEI--- 91 (221)
T ss_dssp HHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHH----HHHHTTS--C--TTCEEEEEES---
T ss_pred HHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHH----HHHHHhC--C--CCCEEEEEeC---
Confidence 345566655554444431111111222222333234458999999988642 2344331 2 3468999974
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecCC-ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHH
Q 011012 269 GRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLDS-DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSG 345 (495)
Q Consensus 269 ~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~~-~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ 345 (495)
+...++.+ .+.++..|+. ++|..-.+.. ++.+.. ......=+.|+++.. .++. .....++..
T Consensus 92 ---~~~~~~~a----~~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~~~fD~V~~d~~--~~~~-----~~~~~~~~~ 156 (221)
T 3u81_A 92 ---NPDCAAIT----QQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTLDMVFLDHW--KDRY-----LPDTLLLEK 156 (221)
T ss_dssp ---CHHHHHHH----HHHHHHHTCGGGEEEEESCHHHHGGGTTT-TSCCCCCSEEEECSC--GGGH-----HHHHHHHHH
T ss_pred ---ChHHHHHH----HHHHHHcCCCCceEEEECCHHHHHHHHHH-hcCCCceEEEEEcCC--cccc-----hHHHHHHHh
Confidence 23334443 3344455664 6664321100 111110 000012245555532 2222 123356666
Q ss_pred hhhcCCcEEEEEe
Q 011012 346 AKTLNPRLVTLVE 358 (495)
Q Consensus 346 ir~L~PkvvtlvE 358 (495)
++-|+|.-+++++
T Consensus 157 ~~~LkpgG~lv~~ 169 (221)
T 3u81_A 157 CGLLRKGTVLLAD 169 (221)
T ss_dssp TTCCCTTCEEEES
T ss_pred ccccCCCeEEEEe
Confidence 6899999888874
No 47
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=73.33 E-value=9.1 Score=38.30 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 214 QAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 214 qAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
..|++.+.+ .+.-+|+|+|-|.|. +...|+.+- |.+++|+++.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~-----~~~~~~~~D~ 241 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGR----NLELIISKY-----PLIKGINFDL 241 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSH----HHHHHHHHC-----TTCEEEEEEC
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcH----HHHHHHHHC-----CCCeEEEeCh
Confidence 456666642 345789999999885 445555542 4689999973
No 48
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=73.19 E-value=15 Score=36.31 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.|++.+.-.+.-.|+|+|-|.|.- ...|+.+. |.+++|+++.| ..++...+++ +..|++
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~----~~~l~~~~-----p~~~~~~~D~~-------~~~~~a~~~~----~~~~~~ 239 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDI----SAAMLKHF-----PELDSTILNLP-------GAIDLVNENA----AEKGVA 239 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHH----HHHHHHHC-----TTCEEEEEECG-------GGHHHHHHHH----HHTTCT
T ss_pred HHHHHhcCCCCCCEEEEECCcccHH----HHHHHHHC-----CCCeEEEEecH-------HHHHHHHHHH----HhcCCC
Confidence 5677776555667999999999863 44444442 46899999741 2344443333 334553
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEeec
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEEE 360 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~e 360 (495)
.+|.... ..+. .+..+++++.+ ..||++.. .....+|+.+ +.|+|.- ++++|..
T Consensus 240 ~~v~~~~~d---~~~~-----~~~~~D~v~~~--~vlh~~~d---~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 240 DRMRGIAVD---IYKE-----SYPEADAVLFC--RILYSANE---QLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp TTEEEEECC---TTTS-----CCCCCSEEEEE--SCGGGSCH---HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred CCEEEEeCc---cccC-----CCCCCCEEEEe--chhccCCH---HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 6665432 2111 12233555544 45777732 2356777776 5589974 4455543
No 49
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=73.18 E-value=7.8 Score=37.23 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=61.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+++.+..... .|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.+++.+....+...
T Consensus 73 ~~~~~~~~~~~~-~vLDlGcG~G~----~~~~l~~~--~-----~~v~gvD~------s~~~~~~a~~~~~~~~~~~~~~ 134 (299)
T 3g2m_A 73 REFATRTGPVSG-PVLELAAGMGR----LTFPFLDL--G-----WEVTALEL------STSVLAAFRKRLAEAPADVRDR 134 (299)
T ss_dssp HHHHHHHCCCCS-CEEEETCTTTT----THHHHHTT--T-----CCEEEEES------CHHHHHHHHHHHHTSCHHHHTT
T ss_pred HHHHHhhCCCCC-cEEEEeccCCH----HHHHHHHc--C-----CeEEEEEC------CHHHHHHHHHHHhhcccccccc
Confidence 445555544434 89999999997 44555655 2 35899974 3344554444433221111134
Q ss_pred eEEeeeecCCccccccccccccCCce-EEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEA-LIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEa-LaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
++|.... .+++. . ++.. +||.+...+|++. +..+..+|+.+ +.|+|.-.+++.
T Consensus 135 v~~~~~d---~~~~~-----~-~~~fD~v~~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 135 CTLVQGD---MSAFA-----L-DKRFGTVVISSGSINELD---EADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp EEEEECB---TTBCC-----C-SCCEEEEEECHHHHTTSC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEeCc---hhcCC-----c-CCCcCEEEECCcccccCC---HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 6665432 22222 1 2222 2333334456652 23467777776 568998666654
No 50
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=72.42 E-value=14 Score=32.82 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=55.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++.. +...-..+|.. .+.
T Consensus 42 ~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~gvD~------s~~~~~~a--------~~~~~~~~~~~---~d~ 93 (203)
T 3h2b_A 42 DGVILDVGSGTGR----WTGHLASL--G-----HQIEGLEP------ATRLVELA--------RQTHPSVTFHH---GTI 93 (203)
T ss_dssp CSCEEEETCTTCH----HHHHHHHT--T-----CCEEEECC------CHHHHHHH--------HHHCTTSEEEC---CCG
T ss_pred CCeEEEecCCCCH----HHHHHHhc--C-----CeEEEEeC------CHHHHHHH--------HHhCCCCeEEe---Ccc
Confidence 5579999999986 55666666 3 26899963 23333333 32222344432 222
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++ ...++..=+|-|...|||+. +.....+|+.+ +.|+|.-.+++.
T Consensus 94 ~~~-----~~~~~~fD~v~~~~~l~~~~---~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 94 TDL-----SDSPKRWAGLLAWYSLIHMG---PGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp GGG-----GGSCCCEEEEEEESSSTTCC---TTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccc-----ccCCCCeEEEEehhhHhcCC---HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222 22234343555566788884 23456677666 668997555543
No 51
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=70.94 E-value=30 Score=29.84 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=60.9
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
..+.+++.+.-.+.-+|+|+|.|.|. +...|+.+ + .++|||+. +...++... +.++..|
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~----~~~~~~~~--~-----~~v~~~D~------~~~~~~~a~----~~~~~~~ 98 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGV----IGIALADE--V-----KSTTMADI------NRRAIKLAK----ENIKLNN 98 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSH----HHHHHGGG--S-----SEEEEEES------CHHHHHHHH----HHHHHTT
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCH----HHHHHHHc--C-----CeEEEEEC------CHHHHHHHH----HHHHHcC
Confidence 34556666655556689999999884 44456655 2 37899963 233344433 3344556
Q ss_pred CC---eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 292 QP---FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 292 vp---FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
++ .+|....+. +.+.. ..=+.|+.|. .+|+- ......+|+.+ +.|+|.-++++.
T Consensus 99 ~~~~~~~~~~~d~~--~~~~~-----~~~D~v~~~~--~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 99 LDNYDIRVVHSDLY--ENVKD-----RKYNKIITNP--PIRAG----KEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp CTTSCEEEEECSTT--TTCTT-----SCEEEEEECC--CSTTC----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccceEEEECchh--ccccc-----CCceEEEECC--Ccccc----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 65 666543221 11111 1113555544 33431 13455666665 568998665554
No 52
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=69.36 E-value=29 Score=34.54 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=57.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~ 302 (495)
.-.|+|+|-|.|. +...|+.+ | .-+++||+. + ..++. ..+.++..|++ .+|....
T Consensus 67 ~~~VLDvGcG~G~----~~~~la~~--g----~~~v~gvD~------s-~~l~~----a~~~~~~~~~~~~v~~~~~d-- 123 (349)
T 3q7e_A 67 DKVVLDVGSGTGI----LCMFAAKA--G----ARKVIGIEC------S-SISDY----AVKIVKANKLDHVVTIIKGK-- 123 (349)
T ss_dssp TCEEEEESCTTSH----HHHHHHHT--T----CSEEEEEEC------S-THHHH----HHHHHHHTTCTTTEEEEESC--
T ss_pred CCEEEEEeccchH----HHHHHHHC--C----CCEEEEECc------H-HHHHH----HHHHHHHcCCCCcEEEEECc--
Confidence 3469999999984 45566666 2 258999974 1 12333 33445566766 6765432
Q ss_pred CccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+++.. .-.+=++|+.+++. +++.. ......+|+.+ |-|+|.-+++.+
T Consensus 124 -~~~~~~---~~~~fD~Iis~~~~--~~l~~--~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 124 -VEEVEL---PVEKVDIIISEWMG--YCLFY--ESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp -TTTCCC---SSSCEEEEEECCCB--BTBTB--TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred -HHHccC---CCCceEEEEEcccc--ccccC--chhHHHHHHHHHHhCCCCCEEccc
Confidence 333311 10111344444432 22322 24567888887 779999777643
No 53
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=68.68 E-value=53 Score=30.83 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=59.8
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-- 293 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-- 293 (495)
+++.+.. +.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++.+. +.++..|++
T Consensus 61 ~l~~~~~-~~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~gvD~------s~~~~~~a~----~~~~~~~~~~~ 118 (285)
T 4htf_A 61 VLAEMGP-QKLRVLDAGGGEGQ----TAIKMAER--G-----HQVILCDL------SAQMIDRAK----QAAEAKGVSDN 118 (285)
T ss_dssp HHHHTCS-SCCEEEEETCTTCH----HHHHHHHT--T-----CEEEEEES------CHHHHHHHH----HHHHC-CCGGG
T ss_pred HHHhcCC-CCCEEEEeCCcchH----HHHHHHHC--C-----CEEEEEEC------CHHHHHHHH----HHHHhcCCCcc
Confidence 3444433 35689999999984 55666666 2 36999974 233444433 334455664
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+|.... .+++.+ ..++..=+|-|...|||+. +. ..+|+.+ +-|+|.-++++.
T Consensus 119 v~~~~~d---~~~~~~----~~~~~fD~v~~~~~l~~~~----~~-~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 119 MQFIHCA---AQDVAS----HLETPVDLILFHAVLEWVA----DP-RSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp EEEEESC---GGGTGG----GCSSCEEEEEEESCGGGCS----CH-HHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEcC---HHHhhh----hcCCCceEEEECchhhccc----CH-HHHHHHHHHHcCCCeEEEEE
Confidence 5554432 222221 1223333445566788872 33 4566655 669998666553
No 54
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=68.42 E-value=37 Score=31.88 Aligned_cols=106 Identities=8% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
+.+++.+.-...-.|+|+|.|.|.--. .|+. + ..++|||+. +...++...+++ -++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~----~l~~-~------~~~v~gvD~------s~~~~~~a~~~~------~~~- 102 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTE----KIAQ-S------GAEVLGTDN------AATMIEKARQNY------PHL- 102 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHH----HHHH-T------TCEEEEEES------CHHHHHHHHHHC------TTS-
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHH----HHHh-C------CCeEEEEEC------CHHHHHHHHhhC------CCC-
Confidence 345566654455689999999886433 4444 2 247999974 233333333222 133
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+|... +.+++. . ++..=+|-|...|||+. + ...+|+.+ +-|+|.-.+++.
T Consensus 103 -~~~~~---d~~~~~-----~-~~~fD~v~~~~~l~~~~----d-~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 103 -HFDVA---DARNFR-----V-DKPLDAVFSNAMLHWVK----E-PEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp -CEEEC---CTTTCC-----C-SSCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEEE
T ss_pred -EEEEC---ChhhCC-----c-CCCcCEEEEcchhhhCc----C-HHHHHHHHHHhcCCCcEEEEE
Confidence 34332 222222 1 23232444556788873 2 34555554 668998655553
No 55
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=68.13 E-value=37 Score=32.31 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=58.6
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
..-+|+|+|.|.|. +...|+.+- + +..++|||+. +...++.+.+++.+. ....-..+|....
T Consensus 36 ~~~~vLDiGcG~G~----~~~~la~~~--~--~~~~v~gvD~------s~~~~~~a~~~~~~~-~~~~~~v~~~~~d--- 97 (299)
T 3g5t_A 36 ERKLLVDVGCGPGT----ATLQMAQEL--K--PFEQIIGSDL------SATMIKTAEVIKEGS-PDTYKNVSFKISS--- 97 (299)
T ss_dssp CCSEEEEETCTTTH----HHHHHHHHS--S--CCSEEEEEES------CHHHHHHHHHHHHHC-C-CCTTEEEEECC---
T ss_pred CCCEEEEECCCCCH----HHHHHHHhC--C--CCCEEEEEeC------CHHHHHHHHHHHHhc-cCCCCceEEEEcC---
Confidence 56789999999884 444455421 1 3468999974 333444443333221 0113456666533
Q ss_pred cccccccc-ccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 304 DETFKASA-LKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~-L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+++.... ..+..+..=+|-|...|||+ . ...+|+.+ +.|+|.-++++
T Consensus 98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~-----~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 98 SDDFKFLGADSVDKQKIDMITAVECAHWF-D-----FEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTCCGGGCTTTTTSSCEEEEEEESCGGGS-C-----HHHHHHHHHHHEEEEEEEEE
T ss_pred HHhCCccccccccCCCeeEEeHhhHHHHh-C-----HHHHHHHHHHhcCCCcEEEE
Confidence 33332111 11112444466666778888 2 34566655 56899855544
No 56
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=67.78 E-value=4.4 Score=38.30 Aligned_cols=101 Identities=9% Similarity=0.100 Sum_probs=57.1
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
+|+|+|.|.| +|--.++.+. |..+++|++- +...++- ..+.|+..|+...+... +-.+
T Consensus 52 ~VLDlGCG~G----plAl~l~~~~-----p~a~~~A~Di------~~~~lei----ar~~~~~~g~~~~v~~~--d~~~- 109 (200)
T 3fzg_A 52 SILDFGCGFN----PLALYQWNEN-----EKIIYHAYDI------DRAEIAF----LSSIIGKLKTTIKYRFL--NKES- 109 (200)
T ss_dssp EEEEETCTTH----HHHHHHHCSS-----CCCEEEEECS------CHHHHHH----HHHHHHHSCCSSEEEEE--CCHH-
T ss_pred eEEEecCCCC----HHHHHHHhcC-----CCCEEEEEeC------CHHHHHH----HHHHHHhcCCCccEEEe--cccc-
Confidence 7789877654 5555555543 5679999963 2233333 34456778988555442 2111
Q ss_pred cccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEee
Q 011012 307 FKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEE 359 (495)
Q Consensus 307 l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ 359 (495)
. ..++..=+|=....||+| .+..+ ...+.++.|+|..+++.=+
T Consensus 110 ---~---~~~~~~DvVLa~k~LHlL-~~~~~---al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 110 ---D---VYKGTYDVVFLLKMLPVL-KQQDV---NILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp ---H---HTTSEEEEEEEETCHHHH-HHTTC---CHHHHHHTCEEEEEEEEEE
T ss_pred ---c---CCCCCcChhhHhhHHHhh-hhhHH---HHHHHHHHhCCCCEEEEeC
Confidence 1 112222222233357888 43233 4447789999998887754
No 57
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=66.38 E-value=29 Score=35.14 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=63.5
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
..+.+++.+.....-+|+|+|.|.|. +...|+.+. |..++|+|+. +...++.+.+++ +..|
T Consensus 210 ~~~~ll~~l~~~~~~~VLDlGcG~G~----~s~~la~~~-----p~~~V~gvD~------s~~al~~Ar~n~----~~ng 270 (375)
T 4dcm_A 210 GARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN-----PQAKVVFVDE------SPMAVASSRLNV----ETNM 270 (375)
T ss_dssp HHHHHHHTCCCSCCSEEEEETCTTCH----HHHHHHHHC-----TTCEEEEEES------CHHHHHHHHHHH----HHHC
T ss_pred HHHHHHHhCcccCCCeEEEEeCcchH----HHHHHHHHC-----CCCEEEEEEC------cHHHHHHHHHHH----HHcC
Confidence 44567888876666789999999984 444455542 3578999973 334444444443 3445
Q ss_pred C----CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhh-hcCCcEEEEE
Q 011012 292 Q----PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAK-TLNPRLVTLV 357 (495)
Q Consensus 292 v----pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir-~L~Pkvvtlv 357 (495)
+ .++|..- +-.+.+... .=+.|+.|-.| |+...........+|+.++ .|+|.-.+++
T Consensus 271 l~~~~~v~~~~~--D~~~~~~~~-----~fD~Ii~nppf--h~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 271 PEALDRCEFMIN--NALSGVEPF-----RFNAVLCNPPF--HQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp GGGGGGEEEEEC--STTTTCCTT-----CEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCcCceEEEEec--hhhccCCCC-----CeeEEEECCCc--ccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4 3566542 212212111 12466666554 4432111233446777764 5899865555
No 58
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=65.88 E-value=30 Score=30.70 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=59.8
Q ss_pred hHHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 213 NQAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 213 NqAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
.+.|++.+.. ...-+|+|+|.|.|. +...|+.+ | .++|||+. +.. ..+.|+..|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~----~~~~l~~~--~-----~~v~~~D~------s~~--------~~~~a~~~~ 88 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGY----WTRHLSGL--A-----DRVTALDG------SAE--------MIAEAGRHG 88 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSH----HHHHHHHH--S-----SEEEEEES------CHH--------HHHHHGGGC
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCH----HHHHHHhc--C-----CeEEEEeC------CHH--------HHHHHHhcC
Confidence 4456666653 233599999999886 44445554 2 37899973 222 233344355
Q ss_pred -CCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 292 -QPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 292 -vpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
-..+|.... .+++ ..++..=+|-|...|||+.. ..+..+|+.+ +.|+|.-++++
T Consensus 89 ~~~~~~~~~d---~~~~------~~~~~~D~v~~~~~l~~~~~---~~~~~~l~~~~~~L~pgG~l~~ 144 (218)
T 3ou2_A 89 LDNVEFRQQD---LFDW------TPDRQWDAVFFAHWLAHVPD---DRFEAFWESVRSAVAPGGVVEF 144 (218)
T ss_dssp CTTEEEEECC---TTSC------CCSSCEEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeEEEecc---cccC------CCCCceeEEEEechhhcCCH---HHHHHHHHHHHHHcCCCeEEEE
Confidence 345555432 2222 12233334555667888832 2256677766 56899754444
No 59
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=65.56 E-value=42 Score=30.34 Aligned_cols=109 Identities=14% Similarity=0.123 Sum_probs=57.0
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..|++.+.....-+|+|+|.|.|. +...|+.+ |+ -++|||+. +...++...+++.. -.
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~----~~~~l~~~--~~----~~v~~vD~------s~~~~~~a~~~~~~------~~ 90 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGW----FCRWAHEH--GA----SYVLGLDL------SEKMLARARAAGPD------TG 90 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCH----HHHHHHHT--TC----SEEEEEES------CHHHHHHHHHTSCS------SS
T ss_pred HHHHHhccccCCCEEEEEcCcCCH----HHHHHHHC--CC----CeEEEEcC------CHHHHHHHHHhccc------CC
Confidence 456666654455689999999885 34555655 32 27999963 22333332222111 13
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++|... +.+++. ...+..=+|-|...|||+. + ...+|+.+ +.|+|.-.+++
T Consensus 91 ~~~~~~---d~~~~~-----~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~~ 142 (243)
T 3bkw_A 91 ITYERA---DLDKLH-----LPQDSFDLAYSSLALHYVE----D-VARLFRTVHQALSPGGHFVF 142 (243)
T ss_dssp EEEEEC---CGGGCC-----CCTTCEEEEEEESCGGGCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEc---Chhhcc-----CCCCCceEEEEeccccccc----h-HHHHHHHHHHhcCcCcEEEE
Confidence 444432 222221 2223222333445678872 2 34666665 66899855554
No 60
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=65.44 E-value=39 Score=32.48 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=62.6
Q ss_pred HhHhhhhcC--CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHH---
Q 011012 215 AILEAVAND--RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAAS--- 289 (495)
Q Consensus 215 AILEA~~g~--~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~s--- 289 (495)
.+++.+... +.-+|+|+|.|.|.- ...|+.++ .-++|||+. +...++...+++.+....
T Consensus 23 ~~~~~l~~~~~~~~~VLDlGcG~G~~----~~~l~~~~------~~~v~gvD~------s~~~l~~a~~~~~~~~~~~~~ 86 (313)
T 3bgv_A 23 EFLEKVRQKKKRDITVLDLGCGKGGD----LLKWKKGR------INKLVCTDI------ADVSVKQCQQRYEDMKNRRDS 86 (313)
T ss_dssp HHHHHHHHTC--CCEEEEETCTTTTT----HHHHHHTT------CSEEEEEES------CHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHhhhccCCCCEEEEECCCCcHH----HHHHHhcC------CCEEEEEeC------CHHHHHHHHHHHHHhhhcccc
Confidence 344444333 456899999998873 33444432 247999974 344555555555432210
Q ss_pred -cCCCeEEeeeecCCcccccc-ccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 290 -IGQPFSFHQCRLDSDETFKA-SALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 290 -lgvpFeF~~v~~~~~e~l~~-~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
....++|... +.+++.. ..+.-..+..=+|-|.+.||++.. .......+|+.+ +.|+|.-++++
T Consensus 87 ~~~~~~~~~~~---D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~LkpgG~li~ 153 (313)
T 3bgv_A 87 EYIFSAEFITA---DSSKELLIDKFRDPQMCFDICSCQFVCHYSFE-SYEQADMMLRNACERLSPGGYFIG 153 (313)
T ss_dssp -CCCEEEEEEC---CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGG-SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccceEEEEEe---cccccchhhhcccCCCCEEEEEEecchhhccC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 1123445432 2222210 011111222334555667888721 123455777776 66999866655
No 61
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=64.73 E-value=67 Score=29.29 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=56.1
Q ss_pred CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecC
Q 011012 223 DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLD 302 (495)
Q Consensus 223 ~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~ 302 (495)
.+.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++...++ ++..|+..+|....
T Consensus 40 ~~~~~vLDlGcG~G~----~~~~l~~~--~-----~~v~gvD~------s~~~l~~a~~~----~~~~~~~v~~~~~d-- 96 (252)
T 1wzn_A 40 REVRRVLDLACGTGI----PTLELAER--G-----YEVVGLDL------HEEMLRVARRK----AKERNLKIEFLQGD-- 96 (252)
T ss_dssp SCCCEEEEETCTTCH----HHHHHHHT--T-----CEEEEEES------CHHHHHHHHHH----HHHTTCCCEEEESC--
T ss_pred cCCCEEEEeCCCCCH----HHHHHHHC--C-----CeEEEEEC------CHHHHHHHHHH----HHhcCCceEEEECC--
Confidence 344689999999885 34455554 2 37999974 33444444443 34456666665432
Q ss_pred CccccccccccccCCceEEEeecc-cCCccccCCCchHHHHHHHh-hhcCCcEEEEEee
Q 011012 303 SDETFKASALKLVRGEALIINCML-HLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEE 359 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~-~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ 359 (495)
..++.. ++..=+|-|.+ .++++. +.....+|+.+ +.|+|.-+++++-
T Consensus 97 -~~~~~~------~~~fD~v~~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 97 -VLEIAF------KNEFDAVTMFFSTIMYFD---EEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp -GGGCCC------CSCEEEEEECSSGGGGSC---HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -hhhccc------CCCccEEEEcCCchhcCC---HHHHHHHHHHHHHHcCCCeEEEEec
Confidence 222211 12221222332 233331 23456777766 5699997777653
No 62
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=63.40 E-value=45 Score=30.07 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=57.5
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
+.-+|+|+|.|.|.- ...|+.+ | .++|||+. +...++...+++ ...++..+|... +
T Consensus 37 ~~~~vLdiG~G~G~~----~~~l~~~--~-----~~~~~~D~------s~~~~~~a~~~~----~~~~~~~~~~~~---d 92 (246)
T 1y8c_A 37 VFDDYLDLACGTGNL----TENLCPK--F-----KNTWAVDL------SQEMLSEAENKF----RSQGLKPRLACQ---D 92 (246)
T ss_dssp CTTEEEEETCTTSTT----HHHHGGG--S-----SEEEEECS------CHHHHHHHHHHH----HHTTCCCEEECC---C
T ss_pred CCCeEEEeCCCCCHH----HHHHHHC--C-----CcEEEEEC------CHHHHHHHHHHH----hhcCCCeEEEec---c
Confidence 456899999998873 3455554 2 36999963 334444444443 334555555432 2
Q ss_pred ccccccccccccCCceEEEeecc-cCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCML-HLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~-~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+++. .. +..=+|-|.. .|||+.. +.....+|+.+ +.|+|.-+++++
T Consensus 93 ~~~~~-----~~-~~fD~v~~~~~~l~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 93 ISNLN-----IN-RKFDLITCCLDSTNYIID--SDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCC-----CS-CCEEEEEECTTGGGGCCS--HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCC-----cc-CCceEEEEcCccccccCC--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 22221 11 2222333455 6788732 23456777776 558998766664
No 63
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=62.62 E-value=61 Score=29.62 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=54.3
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
+.-+|+|+|.|.|.- ...|+.+ + .++|||+. +...++...+++ +...-.++|....
T Consensus 39 ~~~~vLDiG~G~G~~----~~~l~~~--~-----~~v~~vD~------s~~~~~~a~~~~----~~~~~~~~~~~~d--- 94 (263)
T 2yqz_A 39 EEPVFLELGVGTGRI----ALPLIAR--G-----YRYIALDA------DAAMLEVFRQKI----AGVDRKVQVVQAD--- 94 (263)
T ss_dssp SCCEEEEETCTTSTT----HHHHHTT--T-----CEEEEEES------CHHHHHHHHHHT----TTSCTTEEEEESC---
T ss_pred CCCEEEEeCCcCCHH----HHHHHHC--C-----CEEEEEEC------CHHHHHHHHHHh----hccCCceEEEEcc---
Confidence 456899999998864 3345554 2 36999964 333444433332 2223346665432
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+++. +.++..=+|-|...|||+. + ...+|+.+ +-|+|.-.+++.
T Consensus 95 ~~~~~-----~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 95 ARAIP-----LPDESVHGVIVVHLWHLVP----D-WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TTSCC-----SCTTCEEEEEEESCGGGCT----T-HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCC-----CCCCCeeEEEECCchhhcC----C-HHHHHHHHHHHCCCCcEEEEE
Confidence 22221 2233333444556788873 2 34566655 668998655544
No 64
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=62.30 E-value=5.9 Score=35.95 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=59.4
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-C
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-P 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-p 293 (495)
..++.+.....-+|+|+|.|.|.- ...|+.+ + |..++|||+.. ...++.+.++..+.++..++ .
T Consensus 18 ~~~~~l~~~~~~~vLDiGcG~G~~----~~~la~~--~---p~~~v~gvD~s------~~~l~~~~~~a~~~~~~~~~~~ 82 (218)
T 3mq2_A 18 AEFEQLRSQYDDVVLDVGTGDGKH----PYKVARQ--N---PSRLVVALDAD------KSRMEKISAKAAAKPAKGGLPN 82 (218)
T ss_dssp HHHHHHHTTSSEEEEEESCTTCHH----HHHHHHH--C---TTEEEEEEESC------GGGGHHHHHHHTSCGGGTCCTT
T ss_pred HHHHHhhccCCCEEEEecCCCCHH----HHHHHHH--C---CCCEEEEEECC------HHHHHHHHHHHHHhhhhcCCCc
Confidence 344555555667899999998853 3444444 2 46899999742 23344433333333344565 4
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeec-ccC--CccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCM-LHL--PHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~-~~L--h~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+|.... .+++.. .-.. +.+.++.. ..+ ||+. ++ ..+|+.+ +-|+|.-.+++.
T Consensus 83 v~~~~~d---~~~l~~---~~~~-d~v~~~~~~~~~~~~~~~----~~-~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 83 LLYLWAT---AERLPP---LSGV-GELHVLMPWGSLLRGVLG----SS-PEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EEEEECC---STTCCS---CCCE-EEEEEESCCHHHHHHHHT----SS-SHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEecc---hhhCCC---CCCC-CEEEEEccchhhhhhhhc----cH-HHHHHHHHHHcCCCcEEEEE
Confidence 6665432 222221 1111 23332221 122 2442 12 3555555 669998766664
No 65
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=61.87 E-value=38 Score=29.74 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=57.8
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~~ 303 (495)
.-.|+|+|.|.|.- ...++.+ | .-++|||+. +...++.+. +-++..|+ ..+|... +
T Consensus 45 ~~~vLDlgcG~G~~----~~~~~~~--~----~~~v~~vD~------~~~~~~~a~----~~~~~~~~~~v~~~~~---d 101 (189)
T 3p9n_A 45 GLAVLDLYAGSGAL----GLEALSR--G----AASVLFVES------DQRSAAVIA----RNIEALGLSGATLRRG---A 101 (189)
T ss_dssp TCEEEEETCTTCHH----HHHHHHT--T----CSEEEEEEC------CHHHHHHHH----HHHHHHTCSCEEEEES---C
T ss_pred CCEEEEeCCCcCHH----HHHHHHC--C----CCeEEEEEC------CHHHHHHHH----HHHHHcCCCceEEEEc---c
Confidence 34689999988843 2223333 2 247999973 333444433 33445565 3555432 2
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh---cCCcEEEEEeecCC
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT---LNPRLVTLVEEETG 362 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~---L~PkvvtlvE~ea~ 362 (495)
..++.. .+.-..=+.++.|..+ |+. ......+|..+++ |+|.-+++++.+..
T Consensus 102 ~~~~~~-~~~~~~fD~i~~~~p~--~~~----~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 102 VAAVVA-AGTTSPVDLVLADPPY--NVD----SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHHH-HCCSSCCSEEEECCCT--TSC----HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HHHHHh-hccCCCccEEEECCCC--Ccc----hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 222211 0111122466666543 332 1345677777765 99998888876654
No 66
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=61.56 E-value=44 Score=30.23 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=53.9
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc--CCCeEEeeeec
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI--GQPFSFHQCRL 301 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl--gvpFeF~~v~~ 301 (495)
+.-+|+|+|.|.|. +...|+.+ | .++|||+. +...++ .|+.. +...+|....+
T Consensus 53 ~~~~vLDiG~G~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~--------~a~~~~~~~~~~~~~~d~ 107 (242)
T 3l8d_A 53 KEAEVLDVGCGDGY----GTYKLSRT--G-----YKAVGVDI------SEVMIQ--------KGKERGEGPDLSFIKGDL 107 (242)
T ss_dssp TTCEEEEETCTTSH----HHHHHHHT--T-----CEEEEEES------CHHHHH--------HHHTTTCBTTEEEEECBT
T ss_pred CCCeEEEEcCCCCH----HHHHHHHc--C-----CeEEEEEC------CHHHHH--------HHHhhcccCCceEEEcch
Confidence 34589999999885 45566665 3 36899974 222333 33332 33455554322
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++ ....+..=+|-|...|||+ ++. ..+|+.+ +.|+|.-++++.
T Consensus 108 ---~~~-----~~~~~~fD~v~~~~~l~~~----~~~-~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 108 ---SSL-----PFENEQFEAIMAINSLEWT----EEP-LRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp ---TBC-----SSCTTCEEEEEEESCTTSS----SCH-HHHHHHHHHHEEEEEEEEEE
T ss_pred ---hcC-----CCCCCCccEEEEcChHhhc----cCH-HHHHHHHHHHhCCCeEEEEE
Confidence 222 2223434455566778888 233 3455554 679997655543
No 67
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=61.45 E-value=76 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=36.6
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
.+++.+.-...-+|+|+|.|.| .+...|+.+. |..++|+|+. +...++.+. +.++..|++
T Consensus 16 ~~~~~~~~~~~~~vldiG~G~G----~~~~~l~~~~-----~~~~v~~vD~------~~~~~~~a~----~~~~~~~~~ 75 (178)
T 3hm2_A 16 LAISALAPKPHETLWDIGGGSG----SIAIEWLRST-----PQTTAVCFEI------SEERRERIL----SNAINLGVS 75 (178)
T ss_dssp HHHHHHCCCTTEEEEEESTTTT----HHHHHHHTTS-----SSEEEEEECS------CHHHHHHHH----HHHHTTTCT
T ss_pred HHHHHhcccCCCeEEEeCCCCC----HHHHHHHHHC-----CCCeEEEEeC------CHHHHHHHH----HHHHHhCCC
Confidence 3455555455668999999887 3455566653 3588999963 333444433 334456765
No 68
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=59.56 E-value=7.7 Score=38.27 Aligned_cols=150 Identities=10% Similarity=0.097 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhccCCccchhhhhhhHHhHhh----hhcCCe-eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEE
Q 011012 188 HTDVLAAFQLLQDMSPYVKFGHFTANQAILEA----VANDRR-VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITA 262 (495)
Q Consensus 188 ~~~~l~Af~~f~e~sP~~kfahftANqAILEA----~~g~~~-VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITg 262 (495)
..|... -..+.+..|-++ ...-+|.+-|.. +.++.. =+|+|+|.|-|.. ..+..++++. - |..|||+
T Consensus 39 ~~Dr~~-~~~~~~~~P~~~-~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~--~~~~~la~~~--~--P~arVv~ 110 (277)
T 3giw_A 39 PADKEA-GDAMSREWPALP-VHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTS--PNLHEIAQSV--A--PESRVVY 110 (277)
T ss_dssp HHHHHH-HHHHHHHCTTHH-HHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCS--SCHHHHHHHH--C--TTCEEEE
T ss_pred HHHHHH-HHHHHHhCCCHH-HHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcc--cHHHHHHHHH--C--CCCEEEE
Confidence 344433 344566678874 234478877764 233323 3799999986442 1223333322 1 4579999
Q ss_pred ecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcccc-c----cccccccCCceEEEeecccCCccccCCCc
Q 011012 263 LSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDETF-K----ASALKLVRGEALIINCMLHLPHFSYRAPD 337 (495)
Q Consensus 263 I~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l-~----~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~ 337 (495)
|+. +...|.....+|.+. -.-..+|...-+..++.+ . ...+.+ ++.++|-+...|||+... .
T Consensus 111 VD~------sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~--~~p~av~~~avLH~l~d~--~ 177 (277)
T 3giw_A 111 VDN------DPIVLTLSQGLLAST---PEGRTAYVEADMLDPASILDAPELRDTLDL--TRPVALTVIAIVHFVLDE--D 177 (277)
T ss_dssp EEC------CHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHHHTCHHHHTTCCT--TSCCEEEEESCGGGSCGG--G
T ss_pred EeC------ChHHHHHHHHHhccC---CCCcEEEEEecccChhhhhcccccccccCc--CCcchHHhhhhHhcCCch--h
Confidence 973 344455444444321 011356655433332110 1 112332 444455566678999432 1
Q ss_pred hHHHHHH-HhhhcCCcE-EEEEe
Q 011012 338 SIASFLS-GAKTLNPRL-VTLVE 358 (495)
Q Consensus 338 ~~~~fL~-~ir~L~Pkv-vtlvE 358 (495)
....+|+ ..+.|+|.- +++++
T Consensus 178 ~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 178 DAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp CHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hHHHHHHHHHHhCCCCcEEEEEe
Confidence 1245564 457789974 44443
No 69
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=59.32 E-value=32 Score=32.38 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=63.7
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC-C
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG-Q 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg-v 292 (495)
+.|++.+.....-+|+|+|.|.|. +...|+.+ | . ++|||+. +...++.+.+++.+.....+ .
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~--~v~gvD~------s~~~l~~a~~~~~~~~~~~~~~ 109 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGV----DSIMLVEE--G---F--SVTSVDA------SDKMLKYALKERWNRRKEPAFD 109 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSH----HHHHHHHT--T---C--EEEEEES------CHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHhcccCCCEEEEecCCCCH----HHHHHHHC--C---C--eEEEEEC------CHHHHHHHHHhhhhcccccccc
Confidence 445555555566789999999986 34455555 3 2 7999974 34455555444322111111 1
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeec-ccCCcccc--CCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCM-LHLPHFSY--RAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~-~~Lh~L~~--~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+.|... ++.++.. .+ ..++..=+|-|. ..|||+.. ........+|+.+ +.|+|.-++++.
T Consensus 110 ~~~~~~~---d~~~~~~-~~-~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 110 KWVIEEA---NWLTLDK-DV-PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp TCEEEEC---CGGGHHH-HS-CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeeEeec---ChhhCcc-cc-ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 2334322 2222211 11 223333345555 67888843 0123466777776 558998655553
No 70
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=58.67 E-value=17 Score=35.48 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=60.1
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
--.|+|+|-|.|.- +++.+ | ..+++|++-. ..+-..+.+++...|+++.|.......
T Consensus 106 p~~VLDlGCG~gpL------al~~~---~---~~~y~a~DId----------~~~i~~ar~~~~~~g~~~~~~v~D~~~- 162 (253)
T 3frh_A 106 PRRVLDIACGLNPL------ALYER---G---IASVWGCDIH----------QGLGDVITPFAREKDWDFTFALQDVLC- 162 (253)
T ss_dssp CSEEEEETCTTTHH------HHHHT---T---CSEEEEEESB----------HHHHHHHHHHHHHTTCEEEEEECCTTT-
T ss_pred CCeEEEecCCccHH------HHHhc---c---CCeEEEEeCC----------HHHHHHHHHHHHhcCCCceEEEeeccc-
Confidence 34899999987731 11112 2 4788999632 234555667788889999998653211
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEee
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEE 359 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ 359 (495)
..+. .+.+++.++- .+|||-....+ ..++.+..|+|..|++.-+
T Consensus 163 -----~~~~-~~~DvvLllk--~lh~LE~q~~~---~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 163 -----APPA-EAGDLALIFK--LLPLLEREQAG---SAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp -----SCCC-CBCSEEEEES--CHHHHHHHSTT---HHHHHHHHCBCSEEEEEEE
T ss_pred -----CCCC-CCcchHHHHH--HHHHhhhhchh---hHHHHHHHhcCCCEEEEcC
Confidence 1111 1345555553 46777332223 4447778999988887654
No 71
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=58.17 E-value=34 Score=30.81 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHhHhhhhc-CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 214 QAILEAVAN-DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 214 qAILEA~~g-~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
+.+++.+.. .+.-+|+|+|.|.|. +...|+.+ + + ++|||+. +...++...+++..
T Consensus 31 ~~~~~~l~~~~~~~~vLDiGcG~G~----~~~~l~~~--~---~--~v~gvD~------s~~~~~~a~~~~~~------- 86 (250)
T 2p7i_A 31 PFMVRAFTPFFRPGNLLELGSFKGD----FTSRLQEH--F---N--DITCVEA------SEEAISHAQGRLKD------- 86 (250)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSH----HHHHHTTT--C---S--CEEEEES------CHHHHHHHHHHSCS-------
T ss_pred HHHHHHHHhhcCCCcEEEECCCCCH----HHHHHHHh--C---C--cEEEEeC------CHHHHHHHHHhhhC-------
Confidence 334454432 233469999998885 45566654 3 2 5899974 23333333222211
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhh--hcCCcEEEEE
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAK--TLNPRLVTLV 357 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir--~L~Pkvvtlv 357 (495)
..+|... +.+++ ..++..=+|-|...|||+. ++ ..+|+.++ -|+|.-.+++
T Consensus 87 ~v~~~~~---d~~~~------~~~~~fD~v~~~~~l~~~~----~~-~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 87 GITYIHS---RFEDA------QLPRRYDNIVLTHVLEHID----DP-VALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp CEEEEES---CGGGC------CCSSCEEEEEEESCGGGCS----SH-HHHHHHHHHTTEEEEEEEEE
T ss_pred CeEEEEc---cHHHc------CcCCcccEEEEhhHHHhhc----CH-HHHHHHHHHHhcCCCCEEEE
Confidence 4455432 22222 1123333445566788883 22 56777765 6899755444
No 72
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=57.82 E-value=50 Score=29.24 Aligned_cols=44 Identities=30% Similarity=0.464 Sum_probs=32.5
Q ss_pred hhhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 211 TANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 211 tANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
...+.|++.+...+.-+|+|+|.|.|. +...|+.+ | .++|||+.
T Consensus 39 ~~~~~~~~~~~~~~~~~vLdiG~G~G~----~~~~l~~~--~-----~~v~~vD~ 82 (227)
T 3e8s_A 39 VTDQAILLAILGRQPERVLDLGCGEGW----LLRALADR--G-----IEAVGVDG 82 (227)
T ss_dssp THHHHHHHHHHHTCCSEEEEETCTTCH----HHHHHHTT--T-----CEEEEEES
T ss_pred cccHHHHHHhhcCCCCEEEEeCCCCCH----HHHHHHHC--C-----CEEEEEcC
Confidence 355677888776667899999999984 55667766 3 36999974
No 73
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=56.82 E-value=69 Score=28.37 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=55.9
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.+.|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+. +.. ..+.|+....
T Consensus 22 ~~~l~~~~~-~~~~~vLdiG~G~G~----~~~~l~~~--~-----~~~~~~D~------~~~--------~~~~~~~~~~ 75 (230)
T 3cc8_A 22 NPNLLKHIK-KEWKEVLDIGCSSGA----LGAAIKEN--G-----TRVSGIEA------FPE--------AAEQAKEKLD 75 (230)
T ss_dssp CHHHHTTCC-TTCSEEEEETCTTSH----HHHHHHTT--T-----CEEEEEES------SHH--------HHHHHHTTSS
T ss_pred HHHHHHHhc-cCCCcEEEeCCCCCH----HHHHHHhc--C-----CeEEEEeC------CHH--------HHHHHHHhCC
Confidence 345666655 455689999998883 55666666 1 47999963 222 2334443332
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+|... +.+++. +...++..=+|-|...|||+. ++ ..+|+.+ +.|+|.-.+++
T Consensus 76 --~~~~~---d~~~~~---~~~~~~~fD~v~~~~~l~~~~----~~-~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 76 --HVVLG---DIETMD---MPYEEEQFDCVIFGDVLEHLF----DP-WAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp --EEEES---CTTTCC---CCSCTTCEEEEEEESCGGGSS----CH-HHHHHHTGGGEEEEEEEEE
T ss_pred --cEEEc---chhhcC---CCCCCCccCEEEECChhhhcC----CH-HHHHHHHHHHcCCCCEEEE
Confidence 33322 222211 112223222333455678873 22 4677766 55899855444
No 74
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=56.82 E-value=45 Score=32.64 Aligned_cols=113 Identities=20% Similarity=0.184 Sum_probs=62.4
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ- 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv- 292 (495)
+.|++.+.-.+..+|+|+|-|.|.- ...|+.+. |.+++|+++.+ ..++...+++ +..|+
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~----~~~l~~~~-----~~~~~~~~D~~-------~~~~~a~~~~----~~~~~~ 232 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGF----AAAIARRA-----PHVSATVLEMA-------GTVDTARSYL----KDEGLS 232 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHH----HHHHHHHC-----TTCEEEEEECT-------THHHHHHHHH----HHTTCT
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHH----HHHHHHhC-----CCCEEEEecCH-------HHHHHHHHHH----HhcCCC
Confidence 4456666545567999999999853 34444442 46899999741 2344443333 34465
Q ss_pred -CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEee
Q 011012 293 -PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEE 359 (495)
Q Consensus 293 -pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ 359 (495)
.++|..... .+.+. ..+=+|-+...|||+.. .....+|+.+ +.|+|.- ++++|.
T Consensus 233 ~~v~~~~~d~--~~~~~--------~~~D~v~~~~vl~~~~~---~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 233 DRVDVVEGDF--FEPLP--------RKADAIILSFVLLNWPD---HDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp TTEEEEECCT--TSCCS--------SCEEEEEEESCGGGSCH---HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CceEEEeCCC--CCCCC--------CCccEEEEcccccCCCH---HHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 367654321 11111 11323444556788732 2334677776 5589975 444553
No 75
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=56.49 E-value=1.2e+02 Score=28.36 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-- 292 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-- 292 (495)
.|++.+.-...-+|+|+|.|.|. +...|+.+. + .++|||+. +...++.+.+ .++..|+
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~~--~----~~v~gvd~------s~~~~~~a~~----~~~~~~~~~ 114 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGA----TMMRAVEKY--D----VNVVGLTL------SKNQANHVQQ----LVANSENLR 114 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSH----HHHHHHHHH--C----CEEEEEES------CHHHHHHHHH----HHHTCCCCS
T ss_pred HHHHHcCCCCcCEEEEECCcccH----HHHHHHHHc--C----CEEEEEEC------CHHHHHHHHH----HHHhcCCCC
Confidence 34455544455689999988775 444555432 2 28999963 2333444333 3344555
Q ss_pred CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 293 PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 293 pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..+|... +.+++. ..=++|+ |...|||+.. .....+|+.+ +-|+|.-.+++
T Consensus 115 ~~~~~~~---d~~~~~------~~fD~v~--~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 115 SKRVLLA---GWEQFD------EPVDRIV--SIGAFEHFGH---ERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp CEEEEES---CGGGCC------CCCSEEE--EESCGGGTCT---TTHHHHHHHHHHHSCTTCEEEE
T ss_pred CeEEEEC---ChhhCC------CCeeEEE--EeCchhhcCh---HHHHHHHHHHHHhcCCCCEEEE
Confidence 3555432 222332 1113333 3446788842 2345666665 66899844443
No 76
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=56.09 E-value=42 Score=35.19 Aligned_cols=118 Identities=5% Similarity=0.036 Sum_probs=62.2
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHH---HHHHHHc
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRL---VAFAASI 290 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL---~~fA~sl 290 (495)
+.|++.+.-...=+|+|+|-|.|. +.-.+|.+. | .-+++||+. +...++-+.+++ .+.++..
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~----l~l~lA~~~-g----~~kVvGIDi------S~~~lelAr~n~e~frkr~~~~ 227 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQ----VVLQVAAAT-N----CKHHYGVEK------ADIPAKYAETMDREFRKWMKWY 227 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSH----HHHHHHHHC-C----CSEEEEEEC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCH----HHHHHHHHC-C----CCEEEEEeC------CHHHHHHHHHHHHHHHHHHHHh
Confidence 446666654455579999998874 233344332 1 237999973 222233222222 2345666
Q ss_pred CC---CeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 291 GQ---PFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 291 gv---pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
|+ .++|.. .+..++.... .+..=.+|++|+.+ + .++....+....|.|+|.-.+++
T Consensus 228 Gl~~~rVefi~---GD~~~lp~~d-~~~~aDVVf~Nn~~--F-----~pdl~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 228 GKKHAEYTLER---GDFLSEEWRE-RIANTSVIFVNNFA--F-----GPEVDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp TBCCCEEEEEE---CCTTSHHHHH-HHHTCSEEEECCTT--C-----CHHHHHHHHHHHTTSCTTCEEEE
T ss_pred CCCCCCeEEEE---CcccCCcccc-ccCCccEEEEcccc--c-----CchHHHHHHHHHHcCCCCcEEEE
Confidence 76 355543 2222222111 11234577777643 1 13445566666788999855554
No 77
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=54.38 E-value=55 Score=29.69 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=54.2
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC--CCeEEeeeecCC
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG--QPFSFHQCRLDS 303 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg--vpFeF~~v~~~~ 303 (495)
-.|+|+|.|.|. +...|+. +..++|||+. +...++.+.+++. ..+ -..+|... +
T Consensus 68 ~~vLDiGcG~G~----~~~~l~~-------~~~~v~gvD~------s~~~~~~a~~~~~----~~~~~~~v~~~~~---d 123 (235)
T 3lcc_A 68 GRALVPGCGGGH----DVVAMAS-------PERFVVGLDI------SESALAKANETYG----SSPKAEYFSFVKE---D 123 (235)
T ss_dssp EEEEEETCTTCH----HHHHHCB-------TTEEEEEECS------CHHHHHHHHHHHT----TSGGGGGEEEECC---C
T ss_pred CCEEEeCCCCCH----HHHHHHh-------CCCeEEEEEC------CHHHHHHHHHHhh----ccCCCcceEEEEC---c
Confidence 499999999884 3334544 2367999963 3344444443332 222 23555432 2
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh-cCCcEEEEE
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT-LNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~-L~Pkvvtlv 357 (495)
..++.+. +..=+|-|...|||+. +.....+|+.+++ |+|.-.+++
T Consensus 124 ~~~~~~~------~~fD~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~ 169 (235)
T 3lcc_A 124 VFTWRPT------ELFDLIFDYVFFCAIE---PEMRPAWAKSMYELLKPDGELIT 169 (235)
T ss_dssp TTTCCCS------SCEEEEEEESSTTTSC---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcCCCC------CCeeEEEEChhhhcCC---HHHHHHHHHHHHHHCCCCcEEEE
Confidence 2222221 1122344556788873 3456777877754 999865554
No 78
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=53.89 E-value=46 Score=30.82 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-.|+|+|.|.|. +...|+.+ | + ++|||+. +...++.+.+++ -..+|... +.
T Consensus 51 ~~~vLDiGcG~G~----~~~~l~~~--~---~--~v~gvD~------s~~~~~~a~~~~--------~~~~~~~~---d~ 102 (263)
T 3pfg_A 51 AASLLDVACGTGM----HLRHLADS--F---G--TVEGLEL------SADMLAIARRRN--------PDAVLHHG---DM 102 (263)
T ss_dssp CCEEEEETCTTSH----HHHHHTTT--S---S--EEEEEES------CHHHHHHHHHHC--------TTSEEEEC---CT
T ss_pred CCcEEEeCCcCCH----HHHHHHHc--C---C--eEEEEEC------CHHHHHHHHhhC--------CCCEEEEC---Ch
Confidence 3579999999884 55666665 3 2 6899974 233343333322 13444432 22
Q ss_pred cccccccccccCCceEEEeecc-cCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCML-HLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~-~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++.. ++..=+|-|.+ .|||+.. +.....+|+.+ +.|+|.-+++++
T Consensus 103 ~~~~~------~~~fD~v~~~~~~l~~~~~--~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 103 RDFSL------GRRFSAVTCMFSSIGHLAG--QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TTCCC------SCCEEEEEECTTGGGGSCH--HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHCCc------cCCcCEEEEcCchhhhcCC--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 22221 23333444555 7888832 23556777776 558999887775
No 79
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=53.50 E-value=1.1e+02 Score=27.07 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=54.8
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC------CeEEee
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ------PFSFHQ 298 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv------pFeF~~ 298 (495)
.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++. ..+.++..++ .++|..
T Consensus 31 ~~~vLdiG~G~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 3sm3_A 31 DDEILDIGCGSGK----ISLELASK--G-----YSVTGIDI------NSEAIRL----AETAARSPGLNQKTGGKAEFKV 89 (235)
T ss_dssp TCEEEEETCTTSH----HHHHHHHT--T-----CEEEEEES------CHHHHHH----HHHHTTCCSCCSSSSCEEEEEE
T ss_pred CCeEEEECCCCCH----HHHHHHhC--C-----CeEEEEEC------CHHHHHH----HHHHHHhcCCccccCcceEEEE
Confidence 3479999999885 44555555 2 37999974 2222332 2333444555 345543
Q ss_pred eecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 299 CRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 299 v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.. .+.+ ....+..=+|-|...|||+.. +..+..+|+.+ +.|+|.-++++
T Consensus 90 ~d---~~~~-----~~~~~~~D~v~~~~~l~~~~~--~~~~~~~l~~~~~~L~pgG~l~~ 139 (235)
T 3sm3_A 90 EN---ASSL-----SFHDSSFDFAVMQAFLTSVPD--PKERSRIIKEVFRVLKPGAYLYL 139 (235)
T ss_dssp CC---TTSC-----CSCTTCEEEEEEESCGGGCCC--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec---cccc-----CCCCCceeEEEEcchhhcCCC--HHHHHHHHHHHHHHcCCCeEEEE
Confidence 22 2222 122333334445567888732 23345777776 56899754444
No 80
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=53.44 E-value=21 Score=33.19 Aligned_cols=111 Identities=10% Similarity=0.036 Sum_probs=55.5
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~ 302 (495)
..=+|+|+|.|.| .+...||.+. |..++|||+.. ...+-+...+..+-++..|++ .+|...
T Consensus 24 ~~~~vLDiGCG~G----~~~~~la~~~-----~~~~v~GvD~s------~~~ml~~A~~A~~~~~~~~~~~v~~~~~--- 85 (225)
T 3p2e_A 24 FDRVHIDLGTGDG----RNIYKLAIND-----QNTFYIGIDPV------KENLFDISKKIIKKPSKGGLSNVVFVIA--- 85 (225)
T ss_dssp CSEEEEEETCTTS----HHHHHHHHTC-----TTEEEEEECSC------CGGGHHHHHHHTSCGGGTCCSSEEEECC---
T ss_pred CCCEEEEEeccCc----HHHHHHHHhC-----CCCEEEEEeCC------HHHHHHHHHHHHHHHHHcCCCCeEEEEc---
Confidence 3346899998888 3566677653 45889999742 112222222222333455664 666543
Q ss_pred CccccccccccccCCceEEEeecccCCcccc-CCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSY-RAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~-~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+.+++ +..+ .+-+..|.+.+..+++.. .... ...+|+.+ |-|+|.-.++.
T Consensus 86 d~~~l-~~~~---~d~v~~i~~~~~~~~~~~~~~~~-~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 86 AAESL-PFEL---KNIADSISILFPWGTLLEYVIKP-NRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp BTTBC-CGGG---TTCEEEEEEESCCHHHHHHHHTT-CHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHh-hhhc---cCeEEEEEEeCCCcHHhhhhhcc-hHHHHHHHHHhcCCCcEEEE
Confidence 23344 2111 144445554443332100 0001 13455555 66999866555
No 81
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=53.09 E-value=72 Score=27.90 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=52.4
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--CeEEeeeecCC
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--PFSFHQCRLDS 303 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--pFeF~~v~~~~ 303 (495)
-.|+|+|.|.|. +...|+.+- + |.-++|||+. +...++.+.+ .++..|+ .++|... +
T Consensus 24 ~~vLDlGcG~G~----~~~~l~~~~-~---~~~~v~~vD~------s~~~~~~a~~----~~~~~~~~~~v~~~~~---d 82 (197)
T 3eey_A 24 DTVVDATCGNGN----DTAFLASLV-G---ENGRVFGFDI------QDKAIANTTK----KLTDLNLIDRVTLIKD---G 82 (197)
T ss_dssp CEEEESCCTTSH----HHHHHHHHH-C---TTCEEEEECS------CHHHHHHHHH----HHHHTTCGGGEEEECS---C
T ss_pred CEEEEcCCCCCH----HHHHHHHHh-C---CCCEEEEEEC------CHHHHHHHHH----HHHHcCCCCCeEEEEC---C
Confidence 379999999984 333444442 2 2348999963 3344444433 3445566 4565432 2
Q ss_pred ccccccccccccCCceEEEeecccCCccc---cCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFS---YRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~---~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+++.. .+. ..=+.++.|..+ +++-. ...+.....+|+.+ +-|+|.-.+++
T Consensus 83 ~~~~~~-~~~-~~fD~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 83 HQNMDK-YID-CPVKAVMFNLGY-LPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp GGGGGG-TCC-SCEEEEEEEESB-CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHhh-hcc-CCceEEEEcCCc-ccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 222211 011 112456666544 22110 01112233456555 66999755444
No 82
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=52.93 E-value=1.2e+02 Score=29.87 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=59.2
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ- 292 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv- 292 (495)
++|++.+.-.+.-.|+|+|-|.|. +...|+.+ |. -+++||+. +. .++.+. +.++..|+
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~--g~----~~v~gvD~------s~-~~~~a~----~~~~~~~~~ 112 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGI----LSMFAAKA--GA----KKVLGVDQ------SE-ILYQAM----DIIRLNKLE 112 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSH----HHHHHHHT--TC----SEEEEEES------ST-HHHHHH----HHHHHTTCT
T ss_pred HHHHhhhhhcCCCEEEEeeccCcH----HHHHHHHc--CC----CEEEEECh------HH-HHHHHH----HHHHHcCCC
Confidence 455555444444589999999884 44556665 22 48999974 11 333332 33344555
Q ss_pred -CeEEeeeecCCccccccccccccCCceEEEeec-ccCCccccCCCchHHHHHHHh-hhcCCcEEEE
Q 011012 293 -PFSFHQCRLDSDETFKASALKLVRGEALIINCM-LHLPHFSYRAPDSIASFLSGA-KTLNPRLVTL 356 (495)
Q Consensus 293 -pFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~-~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtl 356 (495)
..+|.... .+++. +.-.+=++|+.|.+ +.|++ ...+..+|+.+ |-|+|.-+++
T Consensus 113 ~~i~~~~~d---~~~~~---~~~~~~D~Ivs~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 113 DTITLIKGK---IEEVH---LPVEKVDVIISEWMGYFLLF-----ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTEEEEESC---TTTSC---CSCSCEEEEEECCCBTTBTT-----TCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEee---HHHhc---CCCCcEEEEEEcCchhhccC-----HHHHHHHHHHHHhhcCCCcEEE
Confidence 35554322 22221 11011135555542 23333 24566788776 6799987665
No 83
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=52.90 E-value=74 Score=26.97 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=54.9
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-Ce
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PF 294 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pF 294 (495)
|++.+.-.+.-+|+|+|.|.|. +...|+. + ..++|||+. +...++.+. +.++..|+ ..
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~----~~~~l~~----~---~~~v~~vD~------~~~~~~~a~----~~~~~~~~~~~ 85 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGG----MTVEIAK----R---CKFVYAIDY------LDGAIEVTK----QNLAKFNIKNC 85 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSH----HHHHHHT----T---SSEEEEEEC------SHHHHHHHH----HHHHHTTCCSE
T ss_pred HHHHcCCCCCCEEEEeCCCCCH----HHHHHHh----c---CCeEEEEeC------CHHHHHHHH----HHHHHcCCCcE
Confidence 4444443445589999999887 3344444 1 367999963 233344433 33445565 35
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEE
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLV 357 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvvtlv 357 (495)
+|... +..+. +.-..=+.++.+.. .....+|+.++++ |.-.+++
T Consensus 86 ~~~~~---d~~~~----~~~~~~D~i~~~~~-----------~~~~~~l~~~~~~-~gG~l~~ 129 (183)
T 2yxd_A 86 QIIKG---RAEDV----LDKLEFNKAFIGGT-----------KNIEKIIEILDKK-KINHIVA 129 (183)
T ss_dssp EEEES---CHHHH----GGGCCCSEEEECSC-----------SCHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEC---Ccccc----ccCCCCcEEEECCc-----------ccHHHHHHHHhhC-CCCEEEE
Confidence 55432 22111 11112245554432 2356889999998 8754444
No 84
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=52.75 E-value=67 Score=29.21 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+++.+...+.-+|+|+|.|.|.-- ..|+.+. . .++|+|+. +...++.+.+++.+. -.
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~----~~l~~~~--~----~~v~~vD~------s~~~~~~a~~~~~~~-----~~ 141 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRIT----KNLLTKL--Y----ATTDLLEP------VKHMLEEAKRELAGM-----PV 141 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHH----HHTHHHH--C----SEEEEEES------CHHHHHHHHHHTTTS-----SE
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHH----HHHHHhh--c----CEEEEEeC------CHHHHHHHHHHhccC-----Cc
Confidence 45566665556678999999988633 3333331 2 36899963 233344333332211 23
Q ss_pred eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 294 FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 294 FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+|... +.+++ ...++..=+|-|...|||+.. .....+|+.+ +.|+|.-++++.
T Consensus 142 ~~~~~~---d~~~~-----~~~~~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 142 GKFILA---SMETA-----TLPPNTYDLIVIQWTAIYLTD---ADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EEEEES---CGGGC-----CCCSSCEEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEc---cHHHC-----CCCCCCeEEEEEcchhhhCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence 444432 22222 122333334445567888832 2355666665 668998555554
No 85
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=51.64 E-value=70 Score=31.58 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=61.8
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
.++|++.+.-.+.-+|+|+|-|.|. |...++.+ | .-++|||+. +. .++. ..+.++..|+
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~----ls~~la~~--g----~~~V~~vD~------s~-~~~~----a~~~~~~~~l 97 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGI----LSFFAAQA--G----ARKIYAVEA------ST-MAQH----AEVLVKSNNL 97 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSH----HHHHHHHT--T----CSEEEEEEC------ST-HHHH----HHHHHHHTTC
T ss_pred HHHHHhccccCCcCEEEEcCCCccH----HHHHHHhC--C----CCEEEEECC------HH-HHHH----HHHHHHHcCC
Confidence 3567777765555689999998885 45556655 2 248999974 11 2222 2333444565
Q ss_pred C--eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 293 P--FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 293 p--FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
+ .+|... +.+++.. . .+=+.|+.+.+ ++|+.. +.....+....+-|+|.-+++..
T Consensus 98 ~~~v~~~~~---d~~~~~~---~-~~~D~Ivs~~~--~~~~~~--~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 98 TDRIVVIPG---KVEEVSL---P-EQVDIIISEPM--GYMLFN--ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTTEEEEES---CTTTCCC---S-SCEEEEEECCC--BTTBTT--TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCcEEEEEc---chhhCCC---C-CceeEEEEeCc--hhcCCh--HHHHHHHHHHHhhcCCCeEEEEe
Confidence 3 555432 2333321 1 01134444333 455532 23445555666789999777643
No 86
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=51.33 E-value=1.6e+02 Score=27.62 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
+.-.|+|+|.|.|. +...|+.+- | +..++|||+. +...++.+ .+.++..+...+|....
T Consensus 22 ~~~~vLDiGcG~G~----~~~~l~~~~--~--~~~~v~gvD~------s~~~~~~a----~~~~~~~~~~v~~~~~d--- 80 (284)
T 3gu3_A 22 KPVHIVDYGCGYGY----LGLVLMPLL--P--EGSKYTGIDS------GETLLAEA----RELFRLLPYDSEFLEGD--- 80 (284)
T ss_dssp SCCEEEEETCTTTH----HHHHHTTTS--C--TTCEEEEEES------CHHHHHHH----HHHHHSSSSEEEEEESC---
T ss_pred CCCeEEEecCCCCH----HHHHHHHhC--C--CCCEEEEEEC------CHHHHHHH----HHHHHhcCCceEEEEcc---
Confidence 45789999999883 455566653 2 2378999974 23333333 33344455556665432
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+++.. ++..=+|-|...|||+. +. ..+|+.+ +.|+|.-.+++
T Consensus 81 ~~~~~~------~~~fD~v~~~~~l~~~~----~~-~~~l~~~~~~LkpgG~l~~ 124 (284)
T 3gu3_A 81 ATEIEL------NDKYDIAICHAFLLHMT----TP-ETMLQKMIHSVKKGGKIIC 124 (284)
T ss_dssp TTTCCC------SSCEEEEEEESCGGGCS----SH-HHHHHHHHHTEEEEEEEEE
T ss_pred hhhcCc------CCCeeEEEECChhhcCC----CH-HHHHHHHHHHcCCCCEEEE
Confidence 222221 22233444455678872 23 4555554 67899855543
No 87
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=51.33 E-value=51 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=44.8
Q ss_pred CeeEE-EEccc--------------cCcc---chHHHHHHHhcCCCCCCCCeEEEEEecCC-CCCCCChHHHHHHHHHHH
Q 011012 224 RRVHI-VDYDI--------------MEGI---QWASLMQALVSRKDGPPAPHLRITALSRG-GSGRRSISTVQETGRRLV 284 (495)
Q Consensus 224 ~~VHI-VDf~I--------------~~G~---QWpsLiqaLA~R~~Gpp~P~LRITgI~~p-~~~~~~~~~l~etg~rL~ 284 (495)
-+||| ||-|+ -+|+ |++.+++.++.. |.|+|.||... ++...+.+...+.-+++.
T Consensus 133 ~~V~lrvn~g~~~~~~~~~~~~~~srfG~~~~e~~~~~~~~~~~------~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~ 206 (428)
T 2j66_A 133 ARVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSL------QFTKFIGIHVYTGTQNLNTDSIIESMKYTV 206 (428)
T ss_dssp EEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHC------TTEEEEEEECCCCSCBCCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHhC------CCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 36888 88885 4676 667778777664 57999999765 332334455555556666
Q ss_pred HHHHHc----CCCeEEe
Q 011012 285 AFAASI----GQPFSFH 297 (495)
Q Consensus 285 ~fA~sl----gvpFeF~ 297 (495)
++++.+ |+++++-
T Consensus 207 ~~~~~l~~~~g~~~~~l 223 (428)
T 2j66_A 207 DLGRNIYERYGIVCECI 223 (428)
T ss_dssp HHHHHHHHHHCCCCSEE
T ss_pred HHHHHHHHHhCCCCCEE
Confidence 666544 7776654
No 88
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=50.68 E-value=60 Score=32.07 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=72.2
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
+|++.+.. --.|+|+|.|.|.= - ++-.... |..++++++- +. ..-+.+.++++.+|+++
T Consensus 125 ~i~~~i~~--p~~VLDLGCG~GpL----A--l~~~~~~---p~a~y~a~DI------d~----~~le~a~~~l~~~g~~~ 183 (281)
T 3lcv_B 125 ELFRHLPR--PNTLRDLACGLNPL----A--APWMGLP---AETVYIASDI------DA----RLVGFVDEALTRLNVPH 183 (281)
T ss_dssp HHGGGSCC--CSEEEETTCTTGGG----C--CTTTTCC---TTCEEEEEES------BH----HHHHHHHHHHHHTTCCE
T ss_pred HHHhccCC--CceeeeeccCccHH----H--HHHHhhC---CCCEEEEEeC------CH----HHHHHHHHHHHhcCCCc
Confidence 34455533 34789998887632 1 1222222 5789999974 22 23344566677789998
Q ss_pred EEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEeec--CCCCCCCChHHH
Q 011012 295 SFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEE--TGPIGDGGFVSR 372 (495)
Q Consensus 295 eF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~e--a~~n~~p~F~~R 372 (495)
.|..... . ...+ -.+.+++.+| ..+|||-... ....++.+..|+|..|++.=+- .+--+ +.+.
T Consensus 184 ~~~v~D~--~----~~~p-~~~~DvaL~l--kti~~Le~q~---kg~g~~ll~aL~~~~vvVSfp~ksl~Grs-~gm~-- 248 (281)
T 3lcv_B 184 RTNVADL--L----EDRL-DEPADVTLLL--KTLPCLETQQ---RGSGWEVIDIVNSPNIVVTFPTKSLGQRS-KGMF-- 248 (281)
T ss_dssp EEEECCT--T----TSCC-CSCCSEEEET--TCHHHHHHHS---TTHHHHHHHHSSCSEEEEEEECC--------CHH--
T ss_pred eEEEeee--c----ccCC-CCCcchHHHH--HHHHHhhhhh---hHHHHHHHHHhCCCCEEEeccchhhcCCC-cchh--
Confidence 8865321 1 1111 1234455554 4578883221 2244589999999988876443 22222 4443
Q ss_pred HHHHHHHHHHHHhhh
Q 011012 373 FMDSLHHYSAVYDSL 387 (495)
Q Consensus 373 F~eaL~yYsalFDSL 387 (495)
..|+..|+..
T Consensus 249 -----~~Y~~~~e~~ 258 (281)
T 3lcv_B 249 -----QNYSQSFESQ 258 (281)
T ss_dssp -----HHHHHHHHHH
T ss_pred -----hHHHHHHHHH
Confidence 4677777764
No 89
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=49.61 E-value=1.4e+02 Score=26.33 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=57.9
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+++.+.-...-.|+|+|.|.|. +...|+.+ + |..++|+|+. +...++.+.+ .++..|++
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~----~~~~la~~--~---~~~~v~~vD~------s~~~~~~a~~----~~~~~~~~ 90 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSAS----VSIEASNL--M---PNGRIFALER------NPQYLGFIRD----NLKKFVAR 90 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCH----HHHHHHHH--C---TTSEEEEEEC------CHHHHHHHHH----HHHHHTCT
T ss_pred HHHHHHcCCCCCCEEEEECCCCCH----HHHHHHHH--C---CCCEEEEEeC------CHHHHHHHHH----HHHHhCCC
Confidence 345555555556789999999886 33444444 2 3578999973 3344444433 34445653
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++|..-.. .+.+.. ...=++++++..+ + ....+|+.+ +.|+|.-.+++
T Consensus 91 ~v~~~~~d~--~~~~~~----~~~~D~i~~~~~~--~--------~~~~~l~~~~~~LkpgG~l~~ 140 (204)
T 3e05_A 91 NVTLVEAFA--PEGLDD----LPDPDRVFIGGSG--G--------MLEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp TEEEEECCT--TTTCTT----SCCCSEEEESCCT--T--------CHHHHHHHHHHHCCTTCEEEE
T ss_pred cEEEEeCCh--hhhhhc----CCCCCEEEECCCC--c--------CHHHHHHHHHHhcCCCeEEEE
Confidence 55543221 111111 1122355544322 1 244666665 56899866655
No 90
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=49.50 E-value=55 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=21.3
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+.-+|+|+|.|.|.. ...||.+ | .++|||+.
T Consensus 22 ~~~~vLD~GCG~G~~----~~~la~~--g-----~~V~gvD~ 52 (203)
T 1pjz_A 22 PGARVLVPLCGKSQD----MSWLSGQ--G-----YHVVGAEL 52 (203)
T ss_dssp TTCEEEETTTCCSHH----HHHHHHH--C-----CEEEEEEE
T ss_pred CCCEEEEeCCCCcHh----HHHHHHC--C-----CeEEEEeC
Confidence 345799999988853 3446654 3 37999974
No 91
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=48.88 E-value=1.3e+02 Score=26.36 Aligned_cols=103 Identities=7% Similarity=0.065 Sum_probs=54.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|.-...++ +. + ..++|||+. +...++.+.+++ +..+..++|.... .
T Consensus 24 ~~~vLDiGcG~G~~~~~~~---~~-~------~~~v~~vD~------s~~~~~~a~~~~----~~~~~~~~~~~~d---~ 80 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIF---VE-D------GYKTYGIEI------SDLQLKKAENFS----RENNFKLNISKGD---I 80 (209)
T ss_dssp CSEEEEESCCSSSCTHHHH---HH-T------TCEEEEEEC------CHHHHHHHHHHH----HHHTCCCCEEECC---T
T ss_pred CCEEEEECCCCCHHHHHHH---Hh-C------CCEEEEEEC------CHHHHHHHHHHH----HhcCCceEEEECc---h
Confidence 3579999998886544333 22 1 247999974 334444444333 3334445554322 2
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++ ...++..=+|-|...+||+. +.....+|+.+ +.|+|.-++++.
T Consensus 81 ~~~-----~~~~~~fD~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 81 RKL-----PFKDESMSFVYSYGTIFHMR---KNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp TSC-----CSCTTCEEEEEECSCGGGSC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhC-----CCCCCceeEEEEcChHHhCC---HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222 12223222333445678873 23456677665 669998655543
No 92
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=48.53 E-value=34 Score=33.74 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=27.8
Q ss_pred HhHhhhh--cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 215 AILEAVA--NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 215 AILEA~~--g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
.|++.+. =.+.-+|+|+|-+.|. +...|+.+- |.+++|+++.
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~ 225 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGG----VTKLIHEIF-----PHLKCTVFDQ 225 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSH----HHHHHHHHC-----TTSEEEEEEC
T ss_pred HHHHhcchhccCCCEEEEECCCcCH----HHHHHHHHC-----CCCeEEEecc
Confidence 4666651 1234589999999885 455555543 4689999974
No 93
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=48.52 E-value=1.3e+02 Score=26.35 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=51.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|. +...|+.+ |+ -++|||+. +...++.+. +-++..|+..+|... +.
T Consensus 50 ~~~vlD~g~G~G~----~~~~l~~~--~~----~~v~~vD~------~~~~~~~a~----~~~~~~~~~~~~~~~---d~ 106 (207)
T 1wy7_A 50 GKVVADLGAGTGV----LSYGALLL--GA----KEVICVEV------DKEAVDVLI----ENLGEFKGKFKVFIG---DV 106 (207)
T ss_dssp TCEEEEETCTTCH----HHHHHHHT--TC----SEEEEEES------CHHHHHHHH----HHTGGGTTSEEEEES---CG
T ss_pred cCEEEEeeCCCCH----HHHHHHHc--CC----CEEEEEEC------CHHHHHHHH----HHHHHcCCCEEEEEC---ch
Confidence 4579999999987 44456655 33 27999973 233344333 334445666665532 23
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLV 354 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~Pkvv 354 (495)
+++. ..=++++.|..+. ... .+....+|+.+.++--.++
T Consensus 107 ~~~~------~~~D~v~~~~p~~--~~~---~~~~~~~l~~~~~~l~~~~ 145 (207)
T 1wy7_A 107 SEFN------SRVDIVIMNPPFG--SQR---KHADRPFLLKAFEISDVVY 145 (207)
T ss_dssp GGCC------CCCSEEEECCCCS--SSS---TTTTHHHHHHHHHHCSEEE
T ss_pred HHcC------CCCCEEEEcCCCc--ccc---CCchHHHHHHHHHhcCcEE
Confidence 2331 1235777776543 221 1233567776655553333
No 94
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=47.69 E-value=43 Score=35.16 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=61.7
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
.+|++.+...+.-+|+|+|-|.|. +...|+.+ +..+||||+. +. .+ +...+.++..|+.
T Consensus 148 ~~il~~l~~~~~~~VLDiGcGtG~----la~~la~~------~~~~V~gvD~------s~-~l----~~A~~~~~~~gl~ 206 (480)
T 3b3j_A 148 RAILQNHTDFKDKIVLDVGCGSGI----LSFFAAQA------GARKIYAVEA------ST-MA----QHAEVLVKSNNLT 206 (480)
T ss_dssp HHHHHTGGGTTTCEEEEESCSTTH----HHHHHHHT------TCSEEEEEEC------HH-HH----HHHHHHHHHTTCT
T ss_pred HHHHHhhhhcCCCEEEEecCcccH----HHHHHHHc------CCCEEEEEEc------HH-HH----HHHHHHHHHcCCC
Confidence 456666654455689999999886 44466664 2368999963 11 22 2334445566763
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
.+|... +++++.. . .+=++|+.|.+ ++|+.. +.....+....+-|+|.-+++.+
T Consensus 207 ~~v~~~~~---d~~~~~~---~-~~fD~Ivs~~~--~~~~~~--e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 207 DRIVVIPG---KVEEVSL---P-EQVDIIISEPM--GYMLFN--ERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TTEEEEES---CTTTCCC---S-SCEEEEECCCC--HHHHTC--HHHHHHHHHGGGGEEEEEEEESC
T ss_pred CcEEEEEC---chhhCcc---C-CCeEEEEEeCc--hHhcCc--HHHHHHHHHHHHhcCCCCEEEEE
Confidence 666543 2333221 0 11134444433 344421 22345555556789999777754
No 95
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=46.82 E-value=34 Score=33.65 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=24.1
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+.-+|+|+|-|.|. +...|+.+- |.+++|+++.
T Consensus 188 ~~~~vlDvG~G~G~----~~~~l~~~~-----p~~~~~~~D~ 220 (352)
T 1fp2_A 188 GLESIVDVGGGTGT----TAKIICETF-----PKLKCIVFDR 220 (352)
T ss_dssp TCSEEEEETCTTSH----HHHHHHHHC-----TTCEEEEEEC
T ss_pred cCceEEEeCCCccH----HHHHHHHHC-----CCCeEEEeeC
Confidence 34689999999984 455666553 4678999974
No 96
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=46.55 E-value=1.6e+02 Score=26.29 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeE
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFS 295 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFe 295 (495)
|++.+... -.|+|+|.|.|. +...|+.+ .++|||+. +...++.+.+++ +..+...+
T Consensus 27 ~~~~~~~~--~~vLdiG~G~G~----~~~~l~~~--------~~v~~vD~------s~~~~~~a~~~~----~~~~~~~~ 82 (243)
T 3d2l_A 27 VLEQVEPG--KRIADIGCGTGT----ATLLLADH--------YEVTGVDL------SEEMLEIAQEKA----METNRHVD 82 (243)
T ss_dssp HHHHSCTT--CEEEEESCTTCH----HHHHHTTT--------SEEEEEES------CHHHHHHHHHHH----HHTTCCCE
T ss_pred HHHHcCCC--CeEEEecCCCCH----HHHHHhhC--------CeEEEEEC------CHHHHHHHHHhh----hhcCCceE
Confidence 44444322 478999999885 44455554 37999974 333444443333 33455556
Q ss_pred EeeeecCCccccccccccccCCceEEEeecc-cCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 296 FHQCRLDSDETFKASALKLVRGEALIINCML-HLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 296 F~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~-~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
|.... ..++. .. +..=+|-|.. .+||+.. +.....+|+.+ +.|+|.-+++++
T Consensus 83 ~~~~d---~~~~~-----~~-~~fD~v~~~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 83 FWVQD---MRELE-----LP-EPVDAITILCDSLNYLQT--EADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EEECC---GGGCC-----CS-SCEEEEEECTTGGGGCCS--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcC---hhhcC-----CC-CCcCEEEEeCCchhhcCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 65432 22221 11 2222222333 5777732 34456677766 568998777664
No 97
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=46.51 E-value=77 Score=26.67 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=51.9
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|. +...|+.+ |+ . +|||+. +...++.+.++ ++..++..+|.. .+.
T Consensus 42 ~~~vLD~GcG~G~----~~~~l~~~--~~---~--v~~vD~------~~~~~~~a~~~----~~~~~~~~~~~~---~d~ 97 (171)
T 1ws6_A 42 RGRFLDPFAGSGA----VGLEAASE--GW---E--AVLVEK------DPEAVRLLKEN----VRRTGLGARVVA---LPV 97 (171)
T ss_dssp CCEEEEETCSSCH----HHHHHHHT--TC---E--EEEECC------CHHHHHHHHHH----HHHHTCCCEEEC---SCH
T ss_pred CCeEEEeCCCcCH----HHHHHHHC--CC---e--EEEEeC------CHHHHHHHHHH----HHHcCCceEEEe---ccH
Confidence 3479999999985 44455555 43 4 999963 33344444333 334455444443 222
Q ss_pred ccccccccccc--CCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEeecC
Q 011012 305 ETFKASALKLV--RGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVEEET 361 (495)
Q Consensus 305 e~l~~~~L~l~--~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE~ea 361 (495)
.+..+ .+.-. .=++++.|..+. +.. +..+..+.+ .+-|+|.-+++++-..
T Consensus 98 ~~~~~-~~~~~~~~~D~i~~~~~~~-~~~----~~~~~~~~~-~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 98 EVFLP-EAKAQGERFTVAFMAPPYA-MDL----AALFGELLA-SGLVEAGGLYVLQHPK 149 (171)
T ss_dssp HHHHH-HHHHTTCCEEEEEECCCTT-SCT----THHHHHHHH-HTCEEEEEEEEEEEET
T ss_pred HHHHH-hhhccCCceEEEEECCCCc-hhH----HHHHHHHHh-hcccCCCcEEEEEeCC
Confidence 22111 01000 114566665443 211 222233332 3669998777665443
No 98
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=45.64 E-value=1.1e+02 Score=29.18 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=58.0
Q ss_pred HhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-
Q 011012 215 AILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP- 293 (495)
Q Consensus 215 AILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp- 293 (495)
.|++.+.-...-+|+|+|.|.|. +...|+.+. | .++|||+. +...++... +.++..|++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~-~-----~~v~gvD~------s~~~~~~a~----~~~~~~~~~~ 140 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGT----TMRRAVERF-D-----VNVIGLTL------SKNQHARCE----QVLASIDTNR 140 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSH----HHHHHHHHH-C-----CEEEEEES------CHHHHHHHH----HHHHTSCCSS
T ss_pred HHHHhcCCCCcCEEEEEcccchH----HHHHHHHHC-C-----CEEEEEEC------CHHHHHHHH----HHHHhcCCCC
Confidence 44555544455689999998875 334444442 2 27999963 233344333 334445654
Q ss_pred -eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 -FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 -FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+|... +.+++. ..=++|+ |...|||+.. .....+|+.+ +-|+|.-.+++
T Consensus 141 ~v~~~~~---d~~~~~------~~fD~v~--~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 141 SRQVLLQ---GWEDFA------EPVDRIV--SIEAFEHFGH---ENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp CEEEEES---CGGGCC------CCCSEEE--EESCGGGTCG---GGHHHHHHHHHHHSCTTCEEEE
T ss_pred ceEEEEC---ChHHCC------CCcCEEE--EeChHHhcCH---HHHHHHHHHHHHhcCCCcEEEE
Confidence 555432 233331 1113443 3445788732 3456667665 66999844444
No 99
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=44.50 E-value=2.1e+02 Score=27.76 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
++|++...-.+.-+|+|+|-|.|. |...++.+ |. -+++||+.. ..++.+ .+.++..|++
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~----ls~~la~~--g~----~~v~~vD~s-------~~~~~a----~~~~~~~~~~ 86 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGI----LSMFAAKH--GA----KHVIGVDMS-------SIIEMA----KELVELNGFS 86 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSH----HHHHHHHT--CC----SEEEEEESS-------THHHHH----HHHHHHTTCT
T ss_pred HHHHhhHhhcCCCEEEEecCccHH----HHHHHHHC--CC----CEEEEEChH-------HHHHHH----HHHHHHcCCC
Confidence 345444433334589999999985 34455555 22 489999741 123332 3334455653
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+|... +.+++.. ...+=++|+.+.+ .+++.. ...+..+|+.+ +-|+|.-+++.
T Consensus 87 ~~i~~~~~---d~~~~~~---~~~~~D~Ivs~~~--~~~l~~--~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 87 DKITLLRG---KLEDVHL---PFPKVDIIISEWM--GYFLLY--ESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTEEEEES---CTTTSCC---SSSCEEEEEECCC--BTTBST--TCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCEEEEEC---chhhccC---CCCcccEEEEeCc--hhhccc--HHHHHHHHHHHHhhcCCCeEEEE
Confidence 555432 2222221 1011134444433 233322 23456777776 67999877653
No 100
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=44.43 E-value=1.7e+02 Score=26.09 Aligned_cols=105 Identities=17% Similarity=0.082 Sum_probs=57.3
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP 293 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp 293 (495)
..+++.+.-...-.|+|+|.|.|. +...|+.+ + .++|||+. +...++.+ .+.++..|++
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~----~~~~la~~--~-----~~v~~vD~------s~~~~~~a----~~~~~~~g~~ 103 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGS----VSVEWCLA--G-----GRAITIEP------RADRIENI----QKNIDTYGLS 103 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCH----HHHHHHHT--T-----CEEEEEES------CHHHHHHH----HHHHHHTTCT
T ss_pred HHHHHhcCCCCCCEEEEecCCCCH----HHHHHHHc--C-----CEEEEEeC------CHHHHHHH----HHHHHHcCCC
Confidence 345566554555679999998875 34456666 2 36899973 33334433 3446667876
Q ss_pred --eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 294 --FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 294 --FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
++|..-.+. +.+.. ...=++++++..+ ... +|+.+ +.|+|.-.+++
T Consensus 104 ~~v~~~~~d~~--~~~~~----~~~~D~v~~~~~~-----------~~~-~l~~~~~~LkpgG~lv~ 152 (204)
T 3njr_A 104 PRMRAVQGTAP--AALAD----LPLPEAVFIGGGG-----------SQA-LYDRLWEWLAPGTRIVA 152 (204)
T ss_dssp TTEEEEESCTT--GGGTT----SCCCSEEEECSCC-----------CHH-HHHHHHHHSCTTCEEEE
T ss_pred CCEEEEeCchh--hhccc----CCCCCEEEECCcc-----------cHH-HHHHHHHhcCCCcEEEE
Confidence 666543221 11111 1122455554311 234 66666 55899755554
No 101
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=44.11 E-value=1.2e+02 Score=26.74 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=54.9
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-.|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.+++ ++.|.- .+.
T Consensus 44 ~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~~a~~~~-------~~~~~~-----~d~ 94 (211)
T 3e23_A 44 GAKILELGCGAGY----QAEAMLAA--G-----FDVDATDG------SPELAAEASRRL-------GRPVRT-----MLF 94 (211)
T ss_dssp TCEEEESSCTTSH----HHHHHHHT--T-----CEEEEEES------CHHHHHHHHHHH-------TSCCEE-----CCG
T ss_pred CCcEEEECCCCCH----HHHHHHHc--C-----CeEEEECC------CHHHHHHHHHhc-------CCceEE-----eee
Confidence 3579999999886 45566665 2 37999974 333444444333 444332 122
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++. .++..=+|-|...|||+. +.....+|+.+ +.|+|.-++++.
T Consensus 95 ~~~~------~~~~fD~v~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 95 HQLD------AIDAYDAVWAHACLLHVP---RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp GGCC------CCSCEEEEEECSCGGGSC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCC------CCCcEEEEEecCchhhcC---HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2222 123333455666788883 23456677776 568998666654
No 102
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=43.94 E-value=75 Score=29.15 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=55.9
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~ 302 (495)
..-.|+|+|.|.|.- ...||.+. |..+++||+. +...++.+ .+.++..|++ ++|...
T Consensus 34 ~~~~vLDiGcG~G~~----~~~lA~~~-----p~~~v~giD~------s~~~l~~a----~~~~~~~~l~nv~~~~~--- 91 (218)
T 3dxy_A 34 EAPVTLEIGFGMGAS----LVAMAKDR-----PEQDFLGIEV------HSPGVGAC----LASAHEEGLSNLRVMCH--- 91 (218)
T ss_dssp CCCEEEEESCTTCHH----HHHHHHHC-----TTSEEEEECS------CHHHHHHH----HHHHHHTTCSSEEEECS---
T ss_pred CCCeEEEEeeeChHH----HHHHHHHC-----CCCeEEEEEe------cHHHHHHH----HHHHHHhCCCcEEEEEC---
Confidence 445799999998854 34445442 4578999963 33344443 3345556663 555432
Q ss_pred CccccccccccccCC--ceEEEeecccCCccccCC-CchHHHHHHHh-hhcCCcEEEEEe
Q 011012 303 SDETFKASALKLVRG--EALIINCMLHLPHFSYRA-PDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 303 ~~e~l~~~~L~l~~g--EaLaVN~~~~Lh~L~~~~-~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+.+++-+.. +.++ +.|++|+....++..... .---..||+.+ +.|+|.-++++.
T Consensus 92 Da~~~l~~~--~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 92 DAVEVLHKM--IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp CHHHHHHHH--SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHH--cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 222211111 1233 344555333323221100 00013588877 559999777765
No 103
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=42.15 E-value=42 Score=33.04 Aligned_cols=118 Identities=18% Similarity=0.163 Sum_probs=63.1
Q ss_pred hhHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 011012 212 ANQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG 291 (495)
Q Consensus 212 ANqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg 291 (495)
..+.|++.+.....-+|+|+|-|.|.-- ..|+.+ + |..++|+|+. +...++.+.+++ +..|
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~----~~la~~--~---~~~~v~~vD~------s~~~l~~a~~~~----~~~~ 244 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLS----VAFARH--S---PKIRLTLCDV------SAPAVEASRATL----AANG 244 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHH----HHHHHH--C---TTCBCEEEES------BHHHHHHHHHHH----HHTT
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHH----HHHHHH--C---CCCEEEEEEC------CHHHHHHHHHHH----HHhC
Confidence 3577888874333347999999988643 334443 3 3568999973 333444444333 4456
Q ss_pred CCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 292 QPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 292 vpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+..+|.. .+-. +... ..=+.|+.|.. +|+...........+|+.+ +.|+|.-.+++.
T Consensus 245 ~~~~~~~--~d~~-~~~~-----~~fD~Iv~~~~--~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 245 VEGEVFA--SNVF-SEVK-----GRFDMIISNPP--FHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp CCCEEEE--CSTT-TTCC-----SCEEEEEECCC--CCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCEEEE--cccc-cccc-----CCeeEEEECCC--cccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 7666632 2211 1111 11145555554 4542111123356677776 568998655553
No 104
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=41.57 E-value=58 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=26.8
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
+.|++.+.-.+.-+|+|+|.|.|. +...|+. | ..++|||+.
T Consensus 24 ~~l~~~~~~~~~~~vLDiGcG~G~----~~~~l~~----~---~~~v~gvD~ 64 (261)
T 3ege_A 24 NAIINLLNLPKGSVIADIGAGTGG----YSVALAN----Q---GLFVYAVEP 64 (261)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTSH----HHHHHHT----T---TCEEEEECS
T ss_pred HHHHHHhCCCCCCEEEEEcCcccH----HHHHHHh----C---CCEEEEEeC
Confidence 345555544455689999999886 3344443 2 358999964
No 105
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=41.36 E-value=62 Score=29.04 Aligned_cols=102 Identities=14% Similarity=0.041 Sum_probs=53.1
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~~~ 304 (495)
-+|+|+|-|.|.--.. ++.+ |. -+||+|+. +...++.+. +-++..|+ ..+|... +.
T Consensus 56 ~~vLDlgcG~G~~~~~----l~~~--~~----~~V~~vD~------s~~~l~~a~----~~~~~~~~~~v~~~~~---D~ 112 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLE----ALSR--YA----AGATLIEM------DRAVSQQLI----KNLATLKAGNARVVNS---NA 112 (202)
T ss_dssp CEEEETTCTTCHHHHH----HHHT--TC----SEEEEECS------CHHHHHHHH----HHHHHTTCCSEEEECS---CH
T ss_pred CeEEEeCCCcCHHHHH----HHhc--CC----CEEEEEEC------CHHHHHHHH----HHHHHcCCCcEEEEEC---CH
Confidence 4799999988864322 2233 22 27999963 334444443 33445566 4555432 22
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhh---cCCcEEEEEeec
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKT---LNPRLVTLVEEE 360 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~---L~PkvvtlvE~e 360 (495)
.++.+. .-..=+.|++|..|+ . +....+|+.+++ |+|.-+++++..
T Consensus 113 ~~~~~~--~~~~fD~V~~~~p~~---~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 113 MSFLAQ--KGTPHNIVFVDPPFR---R-----GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHSS--CCCCEEEEEECCSSS---T-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHhh--cCCCCCEEEECCCCC---C-----CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 221110 000113555554432 1 234567777766 999877766543
No 106
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=40.93 E-value=1.7e+02 Score=27.43 Aligned_cols=105 Identities=15% Similarity=0.057 Sum_probs=54.5
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHH-H------H-H------H
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVA-F------A-A------S 289 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~-f------A-~------s 289 (495)
+.-.|+|+|.|.|.- ...||.+ | .++|||+. +...++.+.++... + + . .
T Consensus 68 ~~~~vLD~GCG~G~~----~~~La~~--G-----~~V~gvD~------S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIE----MKWFADR--G-----HTVVGVEI------SEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130 (252)
T ss_dssp CSCEEEETTCTTCTH----HHHHHHT--T-----CEEEEECS------CHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCeEEEeCCCCcHH----HHHHHHC--C-----CeEEEEEC------CHHHHHHHHHhccccccccccccccccccccc
Confidence 456899999998853 4567766 3 37999963 33333332211100 0 0 0 0
Q ss_pred cCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEE
Q 011012 290 IGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVT 355 (495)
Q Consensus 290 lgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvt 355 (495)
.+...+|... +..++.+.. .+..=+|-+...|+++. +..+..+++.+ +-|+|.-..
T Consensus 131 ~~~~i~~~~~---D~~~l~~~~----~~~FD~V~~~~~l~~l~---~~~~~~~l~~~~~~LkpGG~l 187 (252)
T 2gb4_A 131 SSGSISLYCC---SIFDLPRAN----IGKFDRIWDRGALVAIN---PGDHDRYADIILSLLRKEFQY 187 (252)
T ss_dssp TTSSEEEEES---CTTTGGGGC----CCCEEEEEESSSTTTSC---GGGHHHHHHHHHHTEEEEEEE
T ss_pred CCCceEEEEC---ccccCCccc----CCCEEEEEEhhhhhhCC---HHHHHHHHHHHHHHcCCCeEE
Confidence 1233444432 222232210 13333455556788883 34566788776 559997544
No 107
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=40.14 E-value=48 Score=31.22 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=53.8
Q ss_pred CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeec
Q 011012 223 DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRL 301 (495)
Q Consensus 223 ~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~ 301 (495)
...-+|+|+|.|.|.--..|-+. . |..+||+|+. +...++ .+.+.++.+|+. .+|...
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~---~------~~~~v~~vD~------s~~~~~----~a~~~~~~~~l~~v~~~~~-- 137 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIV---R------PELELVLVDA------TRKKVA----FVERAIEVLGLKGARALWG-- 137 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHH---C------TTCEEEEEES------CHHHHH----HHHHHHHHHTCSSEEEEEC--
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH---C------CCCEEEEEEC------CHHHHH----HHHHHHHHhCCCceEEEEC--
Confidence 34568999999998754444332 1 3578999974 223333 344456667774 666543
Q ss_pred CCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+.+++......-..=++++.+. + .....++..+ +-|+|.-..++
T Consensus 138 -d~~~~~~~~~~~~~fD~I~s~a------~-----~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 138 -RAEVLAREAGHREAYARAVARA------V-----APLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp -CHHHHTTSTTTTTCEEEEEEES------S-----CCHHHHHHHHGGGEEEEEEEEE
T ss_pred -cHHHhhcccccCCCceEEEECC------c-----CCHHHHHHHHHHHcCCCeEEEE
Confidence 2333322100000112343332 1 2346677766 56889865544
No 108
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=39.87 E-value=62 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=31.9
Q ss_pred HhHhhhhcC--CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 011012 215 AILEAVAND--RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVA 285 (495)
Q Consensus 215 AILEA~~g~--~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~ 285 (495)
.+|+.+... +.-.|+|+|.+.| .+...|+.+-+ ..+||||+. +...++.+.+++..
T Consensus 35 ~~l~~l~~~~~~~~~VLDiGCG~G----~~~~~la~~~~-----~~~v~gvDi------s~~~i~~A~~~~~~ 92 (292)
T 3g07_A 35 GRLRVLKPEWFRGRDVLDLGCNVG----HLTLSIACKWG-----PSRMVGLDI------DSRLIHSARQNIRH 92 (292)
T ss_dssp GGGGTSCGGGTTTSEEEEESCTTC----HHHHHHHHHTC-----CSEEEEEES------CHHHHHHHHHTC--
T ss_pred HHHHhhhhhhcCCCcEEEeCCCCC----HHHHHHHHHcC-----CCEEEEECC------CHHHHHHHHHHHHh
Confidence 344444433 3457999999998 34445555532 248999974 33445555555443
No 109
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=39.48 E-value=55 Score=28.13 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=54.7
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecCC
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLDS 303 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~~ 303 (495)
-.|+|+|-|.|.- ...|+.+ + .-++|||+. +...++.+ .+.++..|++ .+|.. .+
T Consensus 33 ~~vLDlGcG~G~~----~~~l~~~--~----~~~v~~vD~------~~~~~~~a----~~~~~~~~~~~~~~~~~---~d 89 (177)
T 2esr_A 33 GRVLDLFAGSGGL----AIEAVSR--G----MSAAVLVEK------NRKAQAII----QDNIIMTKAENRFTLLK---ME 89 (177)
T ss_dssp CEEEEETCTTCHH----HHHHHHT--T----CCEEEEECC------CHHHHHHH----HHHHHTTTCGGGEEEEC---SC
T ss_pred CeEEEeCCCCCHH----HHHHHHc--C----CCEEEEEEC------CHHHHHHH----HHHHHHcCCCCceEEEE---Cc
Confidence 4799999988853 3345555 2 257999963 33344443 3445556764 55543 22
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh---hhcCCcEEEEEeecCC
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA---KTLNPRLVTLVEEETG 362 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i---r~L~PkvvtlvE~ea~ 362 (495)
..++.+. +. ..=+.++.|..+. . .....+++.+ +-|+|.-+++++....
T Consensus 90 ~~~~~~~-~~-~~fD~i~~~~~~~--~------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 90 AERAIDC-LT-GRFDLVFLDPPYA--K------ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHHH-BC-SCEEEEEECCSSH--H------HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHhHHh-hc-CCCCEEEECCCCC--c------chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 2221110 00 1114555554431 1 2334566666 6789997777765443
No 110
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=38.96 E-value=1.7e+02 Score=30.38 Aligned_cols=119 Identities=9% Similarity=-0.077 Sum_probs=61.7
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHH---HHHHHHHHHHc
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQET---GRRLVAFAASI 290 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~et---g~rL~~fA~sl 290 (495)
..|++.+.-...-.|+|+|.|.|.+-..|.+.. +..+++||+. +...++.+ -+.+.+-++..
T Consensus 232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~---------g~~~V~GVDi------s~~~l~~A~~Ml~~ar~~~~~~ 296 (433)
T 1u2z_A 232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC---------GCALSFGCEI------MDDASDLTILQYEELKKRCKLY 296 (433)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH---------CCSEEEEEEC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC---------CCCEEEEEeC------CHHHHHHHHHhHHHHHHHHHHc
Confidence 346666654455679999999987655544432 1348999974 22333332 33345555666
Q ss_pred CC---CeEEeeeecCCccccccccc--cccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 291 GQ---PFSFHQCRLDSDETFKASAL--KLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 291 gv---pFeF~~v~~~~~e~l~~~~L--~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
|+ .++|.. .+.+.. ...+ ...+=++|++|..+ + . +.....+-...+.|+|.-.+++-
T Consensus 297 Gl~~~nV~~i~--gD~~~~--~~~~~~~~~~FDvIvvn~~l--~-~----~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 297 GMRLNNVEFSL--KKSFVD--NNRVAELIPQCDVILVNNFL--F-D----EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TBCCCCEEEEE--SSCSTT--CHHHHHHGGGCSEEEECCTT--C-C----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CCCCCceEEEE--cCcccc--ccccccccCCCCEEEEeCcc--c-c----ccHHHHHHHHHHhCCCCeEEEEe
Confidence 74 355542 222211 0011 01233577777543 1 1 22223344455889998666553
No 111
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=38.87 E-value=1.4e+02 Score=26.60 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=52.4
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
+.-.|+|+|.|.|.-- ..|+.+ + + ++|||+. +...++...+++ -..+|....
T Consensus 40 ~~~~vLdiG~G~G~~~----~~l~~~--~---~--~v~~~D~------s~~~~~~a~~~~--------~~~~~~~~d--- 91 (239)
T 3bxo_A 40 EASSLLDVACGTGTHL----EHFTKE--F---G--DTAGLEL------SEDMLTHARKRL--------PDATLHQGD--- 91 (239)
T ss_dssp TCCEEEEETCTTSHHH----HHHHHH--H---S--EEEEEES------CHHHHHHHHHHC--------TTCEEEECC---
T ss_pred CCCeEEEecccCCHHH----HHHHHh--C---C--cEEEEeC------CHHHHHHHHHhC--------CCCEEEECC---
Confidence 4468999999988543 344443 2 2 7999973 233333332221 224444322
Q ss_pred ccccccccccccCCceEEEeecc-cCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCML-HLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~-~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+++. . ++..=+|-|.+ .+||+.. +.....+|+.+ +.|+|.-.++++
T Consensus 92 ~~~~~-----~-~~~~D~v~~~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 92 MRDFR-----L-GRKFSAVVSMFSSVGYLKT--TEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp TTTCC-----C-SSCEEEEEECTTGGGGCCS--HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHcc-----c-CCCCcEEEEcCchHhhcCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 22221 1 22222233333 6788732 24556777776 568999777765
No 112
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=36.94 E-value=2.6e+02 Score=25.99 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=32.2
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEe
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFH 297 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~ 297 (495)
+..+|+|+|.|.|.-= ..|+.+. |..++|||+. +...++.+.++ ++..|++ .+|.
T Consensus 109 ~~~~vLDlG~GsG~~~----~~la~~~-----~~~~v~~vD~------s~~~l~~a~~n----~~~~~~~~v~~~ 164 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIA----LALASER-----PDCEIIAVDR------MPDAVSLAQRN----AQHLAIKNIHIL 164 (276)
T ss_dssp SCCEEEEETCTTSHHH----HHHHHHC-----TTSEEEEECS------SHHHHHHHHHH----HHHHTCCSEEEE
T ss_pred CCCEEEEecCCccHHH----HHHHHhC-----CCCEEEEEEC------CHHHHHHHHHH----HHHcCCCceEEE
Confidence 3458999999988633 3444322 2468999963 33444444333 4445765 5554
No 113
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=36.87 E-value=34 Score=32.44 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.6
Q ss_pred cccchhhhhccCCceeccCCc
Q 011012 425 EVYSWGDWLGVVGFKPVNISF 445 (495)
Q Consensus 425 ~~~~W~~rm~~AGF~~v~ls~ 445 (495)
+.+.|+..|+.+||+.+.+..
T Consensus 235 ~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 235 SEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp CHHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCeEEEeeE
Confidence 456889999999999877654
No 114
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=36.38 E-value=94 Score=29.86 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=37.2
Q ss_pred eeEE-EEccc---cCcc---chHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc
Q 011012 225 RVHI-VDYDI---MEGI---QWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI 290 (495)
Q Consensus 225 ~VHI-VDf~I---~~G~---QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl 290 (495)
+||| ||-|. -.|+ +...+++.+... |.|+|.||-.........+...+.-+++.++++.+
T Consensus 162 ~V~lkVdtGme~~R~G~~~ee~~~l~~~i~~~------~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~~~l 228 (282)
T 3cpg_A 162 GVLLEVNESGEESKSGCDPAHAIRIAQKIGTL------DGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLI 228 (282)
T ss_dssp EEEEEBCCSSCTTSSSBCGGGHHHHHHHHHTC------TTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCCCcCHHHHHHHHHHHHhC------CCceEEeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6898 89887 3676 456667777542 57999999765432223333333445666666543
No 115
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=36.18 E-value=1.2e+02 Score=29.02 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHhccc-cCCHHHHHHHHHHHhcccCCC----C--CChhhhHHHHHHHHHHhhhhcc
Q 011012 105 LRLVHLLMAAAEALTGV-NKSRELAQVILIRLKELVSPN----D--GSNMERLAAYFTDALQGLLEGA 165 (495)
Q Consensus 105 l~L~~LLl~cAeAV~~~-~~~~~~A~~iL~~L~~~aSp~----~--G~~~qRlA~yFaeAL~~Rl~g~ 165 (495)
+.+.++|..+.+..... +.....|+.||..+....... . ..+... ..|.+.+.+|..+.
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~r~~~~ 79 (284)
T 1nv8_A 14 RKIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEE--KRILELVEKRASGY 79 (284)
T ss_dssp CCHHHHHHHHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHH--HHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCH--HHHHHHHHHHHCCC
Confidence 34667777777666532 112344888888877653211 1 222222 57778888887664
No 116
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=35.98 E-value=1.3e+02 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=21.9
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
..-.|+|+|.|.|. +...|+.+ | .++|||+.
T Consensus 54 ~~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~gvD~ 84 (260)
T 2avn_A 54 NPCRVLDLGGGTGK----WSLFLQER--G-----FEVVLVDP 84 (260)
T ss_dssp SCCEEEEETCTTCH----HHHHHHTT--T-----CEEEEEES
T ss_pred CCCeEEEeCCCcCH----HHHHHHHc--C-----CeEEEEeC
Confidence 44589999998886 44556655 2 37999973
No 117
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=35.54 E-value=2.4e+02 Score=25.03 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=56.1
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~ 302 (495)
..-.|+|+|.|.|. +...||.+. |..++|||+. +...++.+.++ ++..|+ ..+|....
T Consensus 41 ~~~~vLDiGcG~G~----~~~~la~~~-----p~~~v~gvD~------s~~~l~~a~~~----~~~~~~~~v~~~~~d-- 99 (214)
T 1yzh_A 41 DNPIHVEVGSGKGA----FVSGMAKQN-----PDINYIGIDI------QKSVLSYALDK----VLEVGVPNIKLLWVD-- 99 (214)
T ss_dssp CCCEEEEESCTTSH----HHHHHHHHC-----TTSEEEEEES------CHHHHHHHHHH----HHHHCCSSEEEEECC--
T ss_pred CCCeEEEEccCcCH----HHHHHHHHC-----CCCCEEEEEc------CHHHHHHHHHH----HHHcCCCCEEEEeCC--
Confidence 34469999999885 334455442 3578999974 33444444333 444565 35665432
Q ss_pred CccccccccccccCCceEEEeecccCCccccCC---CchHHHHHHHhh-hcCCcEEEEEee
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRA---PDSIASFLSGAK-TLNPRLVTLVEE 359 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~---~~~~~~fL~~ir-~L~PkvvtlvE~ 359 (495)
..++. ..+.-..=+.|++|.. .+....+. ......+|+.++ .|+|.-+++++.
T Consensus 100 -~~~~~-~~~~~~~~D~i~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 100 -GSDLT-DYFEDGEIDRLYLNFS--DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp -SSCGG-GTSCTTCCSEEEEESC--CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -HHHHH-hhcCCCCCCEEEEECC--CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 22221 0111111246666632 22211000 001256777775 499997766653
No 118
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=35.37 E-value=2.1e+02 Score=25.08 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeE
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFS 295 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFe 295 (495)
+++.+.. +.-.|+|+|.|.|. +...| +- -++|||+. +...++...+++ -.++
T Consensus 29 ~l~~~~~-~~~~vLdiG~G~G~----~~~~l-----~~----~~v~~vD~------s~~~~~~a~~~~--------~~~~ 80 (211)
T 2gs9_A 29 ALKGLLP-PGESLLEVGAGTGY----WLRRL-----PY----PQKVGVEP------SEAMLAVGRRRA--------PEAT 80 (211)
T ss_dssp HHHTTCC-CCSEEEEETCTTCH----HHHHC-----CC----SEEEEECC------CHHHHHHHHHHC--------TTSE
T ss_pred HHHHhcC-CCCeEEEECCCCCH----hHHhC-----CC----CeEEEEeC------CHHHHHHHHHhC--------CCcE
Confidence 3444433 45589999999884 22233 21 27899963 233343333332 2334
Q ss_pred EeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 296 FHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 296 F~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
|... +.+++ ...++..=+|-|...|||+. + ...+|+.+ +-|+|.-.+++
T Consensus 81 ~~~~---d~~~~-----~~~~~~fD~v~~~~~l~~~~----~-~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 81 WVRA---WGEAL-----PFPGESFDVVLLFTTLEFVE----D-VERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp EECC---CTTSC-----CSCSSCEEEEEEESCTTTCS----C-HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEc---ccccC-----CCCCCcEEEEEEcChhhhcC----C-HHHHHHHHHHHcCCCCEEEE
Confidence 4322 22222 12233222334456788873 2 34566555 66899854444
No 119
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=33.88 E-value=74 Score=31.27 Aligned_cols=111 Identities=9% Similarity=0.128 Sum_probs=56.8
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-CCCeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-GQPFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-gvpFeF~~v~~~~ 303 (495)
.-+|+|+|.|.|. +...++.++ |..+||+|+. +...++...+++.+++..+ +-.++|.. .+
T Consensus 117 ~~~VLdiG~G~G~----~~~~l~~~~-----~~~~v~~vDi------s~~~l~~ar~~~~~~~~~~~~~~v~~~~---~D 178 (321)
T 2pt6_A 117 PKNVLVVGGGDGG----IIRELCKYK-----SVENIDICEI------DETVIEVSKIYFKNISCGYEDKRVNVFI---ED 178 (321)
T ss_dssp CCEEEEEECTTCH----HHHHHTTCT-----TCCEEEEEES------CHHHHHHHHHHCTTTSGGGGSTTEEEEE---SC
T ss_pred CCEEEEEcCCccH----HHHHHHHcC-----CCCEEEEEEC------CHHHHHHHHHHHHhhccccCCCcEEEEE---cc
Confidence 3579999999885 455666553 3578999963 3344444444443321112 12344442 11
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchH--HHHHHHh-hhcCCcEEEEEeec
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSI--ASFLSGA-KTLNPRLVTLVEEE 360 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~--~~fL~~i-r~L~PkvvtlvE~e 360 (495)
..+.-+. . -..=+++++|.....+. +... ..|++.+ +.|+|.-+++++..
T Consensus 179 ~~~~l~~-~-~~~fDvIi~d~~~p~~~-----~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 179 ASKFLEN-V-TNTYDVIIVDSSDPIGP-----AETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp HHHHHHH-C-CSCEEEEEEECCCSSSG-----GGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHhh-c-CCCceEEEECCcCCCCc-----chhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111000 0 01125677775322111 1111 5677776 56899988888644
No 120
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=33.41 E-value=2.7e+02 Score=25.61 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=55.4
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~ 302 (495)
.-.|+|+|.|.|. +...|+.+ ++ . +||||+. +...++.+ .+-++..|+. ++|...
T Consensus 50 ~~~vLDlG~G~G~----~~~~la~~--~~---~-~v~gvDi------~~~~~~~a----~~n~~~~~~~~~v~~~~~--- 106 (259)
T 3lpm_A 50 KGKIIDLCSGNGI----IPLLLSTR--TK---A-KIVGVEI------QERLADMA----KRSVAYNQLEDQIEIIEY--- 106 (259)
T ss_dssp CCEEEETTCTTTH----HHHHHHTT--CC---C-EEEEECC------SHHHHHHH----HHHHHHTTCTTTEEEECS---
T ss_pred CCEEEEcCCchhH----HHHHHHHh--cC---C-cEEEEEC------CHHHHHHH----HHHHHHCCCcccEEEEEC---
Confidence 4579999999984 44567776 33 3 8999963 23334433 3334555664 565432
Q ss_pred CccccccccccccCCceEEEeecccCC---cccc----------CCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLP---HFSY----------RAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh---~L~~----------~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+..++.. .+.-..=++|+.|-.+.-. ++.. ........+|+.+ +-|+|.-.+++
T Consensus 107 D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 107 DLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp CGGGGGG-TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 2222211 1111122577777554322 1110 0012345677776 55899866555
No 121
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=33.17 E-value=55 Score=25.42 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEe
Q 011012 256 PHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFH 297 (495)
Q Consensus 256 P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~ 297 (495)
-.+||||| +...-.|..+.-.+.|+.+|+...|.
T Consensus 42 leiritgv--------peqvrkelakeaerlakefnitvtyt 75 (85)
T 2kl8_A 42 LEIRITGV--------PEQVRKELAKEAERLAKEFNITVTYT 75 (85)
T ss_dssp EEEEEESC--------CHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEecC--------hHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 47999999 23344555555666778888877664
No 122
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=33.05 E-value=2.6e+02 Score=27.54 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=61.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-CCCeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-GQPFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-gvpFeF~~v~~~~ 303 (495)
.-+|+|+|.|.|. +...|+.+. |..+||+|+. +...++...+++.+++..+ +-.++|... +
T Consensus 121 ~~~VLdIG~G~G~----~a~~la~~~-----~~~~V~~VDi------s~~~l~~Ar~~~~~~~~gl~~~rv~~~~~---D 182 (334)
T 1xj5_A 121 PKKVLVIGGGDGG----VLREVARHA-----SIEQIDMCEI------DKMVVDVSKQFFPDVAIGYEDPRVNLVIG---D 182 (334)
T ss_dssp CCEEEEETCSSSH----HHHHHTTCT-----TCCEEEEEES------CHHHHHHHHHHCHHHHGGGGSTTEEEEES---C
T ss_pred CCEEEEECCCccH----HHHHHHHcC-----CCCEEEEEEC------CHHHHHHHHHHHHhhccccCCCcEEEEEC---C
Confidence 3589999999885 456666653 4578999963 3455666666665554333 223555432 1
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEeecC
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVEEET 361 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE~ea 361 (495)
..++-+ .+.-..=++|++|+....+.. . .-....|++.+ +.|+|.-++++..+.
T Consensus 183 ~~~~l~-~~~~~~fDlIi~d~~~p~~~~--~-~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 183 GVAFLK-NAAEGSYDAVIVDSSDPIGPA--K-ELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp HHHHHH-TSCTTCEEEEEECCCCTTSGG--G-GGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHH-hccCCCccEEEECCCCccCcc--h-hhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 111100 000011146666654222211 0 00124667665 669999888876443
No 123
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=32.83 E-value=2.4e+02 Score=28.69 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=59.0
Q ss_pred HhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eE
Q 011012 217 LEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FS 295 (495)
Q Consensus 217 LEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-Fe 295 (495)
++.+.-...-.|+|+|-|.|.--. .||.+ + -+++||+. +...++.+.+ -|+..|++ .+
T Consensus 279 ~~~l~~~~~~~VLDlgcG~G~~~~----~la~~--~-----~~V~gvD~------s~~al~~A~~----n~~~~~~~~v~ 337 (433)
T 1uwv_A 279 LEWLDVQPEDRVLDLFCGMGNFTL----PLATQ--A-----ASVVGVEG------VPALVEKGQQ----NARLNGLQNVT 337 (433)
T ss_dssp HHHHTCCTTCEEEEESCTTTTTHH----HHHTT--S-----SEEEEEES------CHHHHHHHHH----HHHHTTCCSEE
T ss_pred HHhhcCCCCCEEEECCCCCCHHHH----HHHhh--C-----CEEEEEeC------CHHHHHHHHH----HHHHcCCCceE
Confidence 344433334479999999886433 45554 2 36899963 3444444433 34556774 66
Q ss_pred EeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 296 FHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 296 F~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
|..-.+. +.+....+.-..=++|++|- ++. ....+++.+..++|+.++.+.
T Consensus 338 f~~~d~~--~~l~~~~~~~~~fD~Vv~dP----Pr~------g~~~~~~~l~~~~p~~ivyvs 388 (433)
T 1uwv_A 338 FYHENLE--EDVTKQPWAKNGFDKVLLDP----ARA------GAAGVMQQIIKLEPIRIVYVS 388 (433)
T ss_dssp EEECCTT--SCCSSSGGGTTCCSEEEECC----CTT------CCHHHHHHHHHHCCSEEEEEE
T ss_pred EEECCHH--HHhhhhhhhcCCCCEEEECC----CCc------cHHHHHHHHHhcCCCeEEEEE
Confidence 6543221 11211011111225666652 211 134788999999999888763
No 124
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=31.72 E-value=3.1e+02 Score=25.23 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=31.7
Q ss_pred cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 011012 222 NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAF 286 (495)
Q Consensus 222 g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~f 286 (495)
..+...|+|+|.|.|. ++..||.+. |..+++||+. +...++.+.+++.+.
T Consensus 44 ~~~~~~vLDiGcG~G~----~~~~la~~~-----p~~~v~GiDi------s~~~l~~A~~~~~~l 93 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGG----LLVELSPLF-----PDTLILGLEI------RVKVSDYVQDRIRAL 93 (235)
T ss_dssp --CCEEEEEETCTTCH----HHHHHGGGS-----TTSEEEEEES------CHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEccCCcH----HHHHHHHHC-----CCCeEEEEEC------CHHHHHHHHHHHHHH
Confidence 3456789999998885 455567653 3568999974 344555555555443
No 125
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=31.28 E-value=2e+02 Score=26.01 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=53.9
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-CCCeEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-GQPFSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-gvpFeF~~v~~~ 302 (495)
+.-.|+|+|.|.|. +...|+.+. . .++|||+. +...++.+.+++. .. +...+|...
T Consensus 79 ~~~~vLDiGcG~G~----~~~~l~~~~--~----~~v~~vD~------s~~~~~~a~~~~~----~~~~~~~~~~~~--- 135 (241)
T 2ex4_A 79 GTSCALDCGAGIGR----ITKRLLLPL--F----REVDMVDI------TEDFLVQAKTYLG----EEGKRVRNYFCC--- 135 (241)
T ss_dssp CCSEEEEETCTTTH----HHHHTTTTT--C----SEEEEEES------CHHHHHHHHHHTG----GGGGGEEEEEEC---
T ss_pred CCCEEEEECCCCCH----HHHHHHHhc--C----CEEEEEeC------CHHHHHHHHHHhh----hcCCceEEEEEc---
Confidence 35689999998885 444555543 2 37999963 3334444433332 22 223444432
Q ss_pred CccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+++++. ...+..=+|-|...|||+.. ..+..+|+.+ +.|+|.-++++
T Consensus 136 d~~~~~-----~~~~~fD~v~~~~~l~~~~~---~~~~~~l~~~~~~LkpgG~l~i 183 (241)
T 2ex4_A 136 GLQDFT-----PEPDSYDVIWIQWVIGHLTD---QHLAEFLRRCKGSLRPNGIIVI 183 (241)
T ss_dssp CGGGCC-----CCSSCEEEEEEESCGGGSCH---HHHHHHHHHHHHHEEEEEEEEE
T ss_pred ChhhcC-----CCCCCEEEEEEcchhhhCCH---HHHHHHHHHHHHhcCCCeEEEE
Confidence 222222 22232223334456788832 2345677665 56899855544
No 126
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=30.47 E-value=89 Score=28.76 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=33.4
Q ss_pred hHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHH
Q 011012 216 ILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLV 284 (495)
Q Consensus 216 ILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~ 284 (495)
+++.+.+.+...|+|+|.|.|. +...|+.+-.. |..+||||+. +...++.+.+++.
T Consensus 43 ~l~~~~~~~~~~vLD~gcGsG~----~~~~la~~~~~---~~~~v~gvDi------s~~~l~~A~~~~~ 98 (250)
T 1o9g_A 43 ALARLPGDGPVTLWDPCCGSGY----LLTVLGLLHRR---SLRQVIASDV------DPAPLELAAKNLA 98 (250)
T ss_dssp HHHTSSCCSCEEEEETTCTTSH----HHHHHHHHTGG---GEEEEEEEES------CHHHHHHHHHHHH
T ss_pred HHHhcccCCCCeEEECCCCCCH----HHHHHHHHhcc---CCCeEEEEEC------CHHHHHHHHHHHH
Confidence 3344444466899999999994 34444443111 3579999974 3445555544443
No 127
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=30.17 E-value=86 Score=28.36 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=22.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
.-+|+|+|.|.|. +...|+.+ | .++|||+.
T Consensus 49 ~~~vLDiGcG~G~----~~~~l~~~--~-----~~v~~vD~ 78 (226)
T 3m33_A 49 QTRVLEAGCGHGP----DAARFGPQ--A-----ARWAAYDF 78 (226)
T ss_dssp TCEEEEESCTTSH----HHHHHGGG--S-----SEEEEEES
T ss_pred CCeEEEeCCCCCH----HHHHHHHc--C-----CEEEEEEC
Confidence 3479999999886 56666666 2 37999974
No 128
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=29.96 E-value=3.1e+02 Score=24.66 Aligned_cols=106 Identities=10% Similarity=0.018 Sum_probs=53.0
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDS 303 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~ 303 (495)
..-+|+|+|.|.|. +...|+.+ + +. ++|||+. +...++.+. +.++..+...+|... +
T Consensus 60 ~~~~vLDiGcGtG~----~~~~l~~~--~---~~-~v~gvD~------s~~~l~~a~----~~~~~~~~~v~~~~~---d 116 (236)
T 1zx0_A 60 KGGRVLEVGFGMAI----AASKVQEA--P---ID-EHWIIEC------NDGVFQRLR----DWAPRQTHKVIPLKG---L 116 (236)
T ss_dssp TCEEEEEECCTTSH----HHHHHHTS--C---EE-EEEEEEC------CHHHHHHHH----HHGGGCSSEEEEEES---C
T ss_pred CCCeEEEEeccCCH----HHHHHHhc--C---CC-eEEEEcC------CHHHHHHHH----HHHHhcCCCeEEEec---C
Confidence 45689999999884 34445443 2 23 8999974 333333332 334445544555432 2
Q ss_pred ccccccccccccCC--ceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 304 DETFKASALKLVRG--EALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 304 ~e~l~~~~L~l~~g--EaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
.+++.. .+.++ ++|+.+ .+.+ +.........+.+|+.+ |-|+|.-+++.
T Consensus 117 ~~~~~~---~~~~~~fD~V~~d-~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 117 WEDVAP---TLPDGHFDGILYD-TYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp HHHHGG---GSCTTCEEEEEEC-CCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred HHHhhc---ccCCCceEEEEEC-Cccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 222210 12222 344431 3333 22111123345667665 66899876654
No 129
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=29.95 E-value=1.6e+02 Score=26.45 Aligned_cols=56 Identities=5% Similarity=0.061 Sum_probs=33.0
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEee
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQ 298 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~ 298 (495)
..-.|+|+|.|.|.- ...||.+. |..+++||+. +...++.+.+ -++..|++ ++|..
T Consensus 38 ~~~~vLDiGcG~G~~----~~~la~~~-----p~~~v~giD~------s~~~l~~a~~----~~~~~~~~nv~~~~ 94 (213)
T 2fca_A 38 DNPIHIEVGTGKGQF----ISGMAKQN-----PDINYIGIEL------FKSVIVTAVQ----KVKDSEAQNVKLLN 94 (213)
T ss_dssp CCCEEEEECCTTSHH----HHHHHHHC-----TTSEEEEECS------CHHHHHHHHH----HHHHSCCSSEEEEC
T ss_pred CCceEEEEecCCCHH----HHHHHHHC-----CCCCEEEEEe------chHHHHHHHH----HHHHcCCCCEEEEe
Confidence 345699999998854 33455542 3578999963 3344444333 34455664 56543
No 130
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=29.75 E-value=3.6e+02 Score=25.76 Aligned_cols=110 Identities=9% Similarity=0.011 Sum_probs=56.6
Q ss_pred hHHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC
Q 011012 213 NQAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ 292 (495)
Q Consensus 213 NqAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv 292 (495)
-..+++.+.-...-+|+|+|.|.|. +...|+.+ ++ +.-++|||+. +...++...+ .++..|+
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~--~~--~~~~v~gvD~------s~~~~~~a~~----~~~~~g~ 125 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGY----NAAVMSRV--VG--EKGLVVSVEY------SRKICEIAKR----NVERLGI 125 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSH----HHHHHHHH--HC--TTCEEEEEES------CHHHHHHHHH----HHHHTTC
T ss_pred HHHHHHhcCCCCcCEEEEecCCchH----HHHHHHHh--cC--CCCEEEEEEC------CHHHHHHHHH----HHHHcCC
Confidence 3455565554455689999988874 44445544 22 2468999963 3334444333 3345565
Q ss_pred C-eEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHhhhcCCcEEEEEe
Q 011012 293 P-FSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGAKTLNPRLVTLVE 358 (495)
Q Consensus 293 p-FeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~ir~L~PkvvtlvE 358 (495)
+ .+|... +.++..+. -.+=++|+++. .+||+. + ...+.|+|.-++++.
T Consensus 126 ~~v~~~~~---d~~~~~~~---~~~fD~Iv~~~--~~~~~~-------~---~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 126 ENVIFVCG---DGYYGVPE---FSPYDVIFVTV--GVDEVP-------E---TWFTQLKEGGRVIVP 174 (317)
T ss_dssp CSEEEEES---CGGGCCGG---GCCEEEEEECS--BBSCCC-------H---HHHHHEEEEEEEEEE
T ss_pred CCeEEEEC---Chhhcccc---CCCeEEEEEcC--CHHHHH-------H---HHHHhcCCCcEEEEE
Confidence 4 555432 22221110 01113444444 456763 1 234678897555553
No 131
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=29.69 E-value=89 Score=27.48 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=51.9
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC-eEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP-FSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp-FeF~~v~~~~~ 304 (495)
-+|+|+|.|.|.--..|.+.+ |..++|+|+. +...++. +.+.++..|++ .+|.... +
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~---------~~~~v~~vD~------s~~~~~~----a~~~~~~~~~~~v~~~~~d---~ 124 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVR---------PEAHFTLLDS------LGKRVRF----LRQVQHELKLENIEPVQSR---V 124 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHC---------TTSEEEEEES------CHHHHHH----HHHHHHHTTCSSEEEEECC---T
T ss_pred CeEEEECCCCCHHHHHHHHHC---------CCCEEEEEeC------CHHHHHH----HHHHHHHcCCCCeEEEecc---h
Confidence 479999999997655444432 2468999973 2333333 33445556765 6665432 2
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+++.+. ..=+.++.|. + .....+|+.+ +.|+|.-+++++
T Consensus 125 ~~~~~~----~~~D~i~~~~---~--------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 125 EEFPSE----PPFDGVISRA---F--------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp TTSCCC----SCEEEEECSC---S--------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhCCcc----CCcCEEEEec---c--------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 222211 0112333221 1 1245677666 558998776665
No 132
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=29.55 E-value=61 Score=31.20 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=27.5
Q ss_pred HHhHhhhhcCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecC
Q 011012 214 QAILEAVANDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSR 265 (495)
Q Consensus 214 qAILEA~~g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~ 265 (495)
..|++.+.-...-+|+|+|.|.|. +-..|+.+ | -++|||+.
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~----~a~~La~~--g-----~~V~gvD~ 75 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRF----LIEKALER--G-----ASVTVFDF 75 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHH----HHHHHHHT--T-----CEEEEEES
T ss_pred HHHHHhcCCCCcCEEEEEeCcchH----HHHHHHhc--C-----CEEEEEEC
Confidence 345565554555689999998886 44556665 2 26999973
No 133
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=28.95 E-value=2.8e+02 Score=23.94 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=51.9
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
.|+|+|.|.|. +...|+.+ | .++|||+. +...++.+.++ ++..|+..+|.... .++
T Consensus 32 ~vLdiGcG~G~----~~~~l~~~--~-----~~v~~vD~------s~~~~~~a~~~----~~~~~~~~~~~~~d---~~~ 87 (202)
T 2kw5_A 32 KILCLAEGEGR----NACFLASL--G-----YEVTAVDQ------SSVGLAKAKQL----AQEKGVKITTVQSN---LAD 87 (202)
T ss_dssp EEEECCCSCTH----HHHHHHTT--T-----CEEEEECS------SHHHHHHHHHH----HHHHTCCEEEECCB---TTT
T ss_pred CEEEECCCCCH----hHHHHHhC--C-----CeEEEEEC------CHHHHHHHHHH----HHhcCCceEEEEcC---hhh
Confidence 89999998875 34556655 2 37999963 33344444333 33346666665432 222
Q ss_pred cccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 307 FKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 307 l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
+. +.-..=+.|+.+ +.|+ .+.....+|+.+ +.|+|.-++++.
T Consensus 88 ~~---~~~~~fD~v~~~----~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 88 FD---IVADAWEGIVSI----FCHL---PSSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp BS---CCTTTCSEEEEE----CCCC---CHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred cC---CCcCCccEEEEE----hhcC---CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 111111344432 2333 123456677766 568998655554
No 134
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=28.77 E-value=1.5e+02 Score=30.03 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=42.6
Q ss_pred CeeEE-EEccc---------------cCcc---chHHHHHHHhcCCCCCCCCeEEEEEecCC-CCCCCChHHHHHHHHHH
Q 011012 224 RRVHI-VDYDI---------------MEGI---QWASLMQALVSRKDGPPAPHLRITALSRG-GSGRRSISTVQETGRRL 283 (495)
Q Consensus 224 ~~VHI-VDf~I---------------~~G~---QWpsLiqaLA~R~~Gpp~P~LRITgI~~p-~~~~~~~~~l~etg~rL 283 (495)
-+||| ||-|+ -+|+ +++.+++.+... |.|+|.||... ++...+.+...+.-+++
T Consensus 150 ~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~e~~~l~~~~~~~------~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~ 223 (425)
T 2qgh_A 150 ARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKS------AFLEPVSVHFHIGSQLLDLEPIIEASQKV 223 (425)
T ss_dssp EEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHHC------SSEEEEEEECCCBSSBCCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHHhC------CCccEEEEEEECCCCCCCHHHHHHHHHHH
Confidence 36888 88752 3677 445566666543 57999999765 22222445556666667
Q ss_pred HHHHHHc---CCCeEEe
Q 011012 284 VAFAASI---GQPFSFH 297 (495)
Q Consensus 284 ~~fA~sl---gvpFeF~ 297 (495)
.++++.+ |+++++-
T Consensus 224 ~~~~~~l~~~g~~~~~l 240 (425)
T 2qgh_A 224 AKIAKSLIALGIDLRFF 240 (425)
T ss_dssp HHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHhcCCCCCEE
Confidence 7666655 7776654
No 135
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=28.25 E-value=34 Score=28.16 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEe
Q 011012 252 GPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFH 297 (495)
Q Consensus 252 Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~ 297 (495)
|| |..|||...... ..-...|+++-..+.+..+..|..|+|+
T Consensus 50 ga--P~Y~i~~~~~D~--k~ge~~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 50 GA--PRYRVDVVGTNP--KEASEALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp ST--TEEEEEEEESCH--HHHHHHHHHHHHHHHHHHHHTTEEEEEC
T ss_pred cC--CeEEEEEEecCH--HHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 56 788888885321 0123568889999999999999999986
No 136
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=28.15 E-value=3.4e+02 Score=25.45 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=50.1
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCccc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDET 306 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~ 306 (495)
.|+|+|.|.|. +...|+.+ | -++|||+. +...+ +.|+.. -.++|.... .|+
T Consensus 42 ~vLDvGcGtG~----~~~~l~~~--~-----~~v~gvD~------s~~ml--------~~a~~~-~~v~~~~~~---~e~ 92 (257)
T 4hg2_A 42 DALDCGCGSGQ----ASLGLAEF--F-----ERVHAVDP------GEAQI--------RQALRH-PRVTYAVAP---AED 92 (257)
T ss_dssp EEEEESCTTTT----THHHHHTT--C-----SEEEEEES------CHHHH--------HTCCCC-TTEEEEECC---TTC
T ss_pred CEEEEcCCCCH----HHHHHHHh--C-----CEEEEEeC------cHHhh--------hhhhhc-CCceeehhh---hhh
Confidence 58999999884 34556654 2 25899974 22222 223322 234554432 222
Q ss_pred cccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 307 FKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 307 l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+ .+.++.+=+|-|...||++. .+.+|+.+ |-|+|.-++++
T Consensus 93 ~-----~~~~~sfD~v~~~~~~h~~~------~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 93 T-----GLPPASVDVAIAAQAMHWFD------LDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp C-----CCCSSCEEEEEECSCCTTCC------HHHHHHHHHHHEEEEEEEEE
T ss_pred h-----cccCCcccEEEEeeehhHhh------HHHHHHHHHHHcCCCCEEEE
Confidence 2 23344444556667788872 24566655 56899855433
No 137
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=27.74 E-value=3.6e+02 Score=25.49 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=57.6
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~~ 303 (495)
.-+|+|+|.|.|. +...++.++ |.-+||+|+. +...++...+++.+++..++- .+++.. .+-
T Consensus 76 ~~~VLdiG~G~G~----~~~~l~~~~-----~~~~v~~vEi------d~~~v~~ar~~~~~~~~~~~~~rv~v~~--~D~ 138 (275)
T 1iy9_A 76 PEHVLVVGGGDGG----VIREILKHP-----SVKKATLVDI------DGKVIEYSKKFLPSIAGKLDDPRVDVQV--DDG 138 (275)
T ss_dssp CCEEEEESCTTCH----HHHHHTTCT-----TCSEEEEEES------CHHHHHHHHHHCHHHHTTTTSTTEEEEE--SCS
T ss_pred CCEEEEECCchHH----HHHHHHhCC-----CCceEEEEEC------CHHHHHHHHHHhHhhccccCCCceEEEE--CcH
Confidence 4579999999884 556666653 3468999963 344555555566555433321 345442 121
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCch--HHHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDS--IASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~--~~~fL~~i-r~L~PkvvtlvE 358 (495)
.+-+.. . -..=++++++... |.. .+.. ...|++.+ +.|+|.-++++.
T Consensus 139 ~~~l~~--~-~~~fD~Ii~d~~~--~~~---~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 139 FMHIAK--S-ENQYDVIMVDSTE--PVG---PAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp HHHHHT--C-CSCEEEEEESCSS--CCS---CCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhh--C-CCCeeEEEECCCC--CCC---cchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 111110 0 0122566666432 221 1111 14566665 679999888775
No 138
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=27.04 E-value=1.3e+02 Score=28.66 Aligned_cols=109 Identities=9% Similarity=0.116 Sum_probs=54.7
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-CCCeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-GQPFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-gvpFeF~~v~~~~ 303 (495)
.-+|+|+|.|.|. +...++.+. |..+||+|+. +...++...+++...+..+ +-.+++... +
T Consensus 79 ~~~VLdiG~G~G~----~~~~l~~~~-----~~~~v~~vDi------d~~~i~~a~~~~~~~~~~~~~~~v~~~~~---D 140 (283)
T 2i7c_A 79 PKNVLVVGGGDGG----IIRELCKYK-----SVENIDICEI------DETVIEVSKIYFKNISCGYEDKRVNVFIE---D 140 (283)
T ss_dssp CCEEEEEECTTSH----HHHHHTTCT-----TCCEEEEEES------CHHHHHHHHHHCTTTSGGGGSTTEEEEES---C
T ss_pred CCeEEEEeCCcCH----HHHHHHHcC-----CCCEEEEEEC------CHHHHHHHHHHhHHhccccCCCcEEEEEC---C
Confidence 3579999988874 556666552 3578999963 3334444444333222111 123444321 1
Q ss_pred ccccccccccccCCceEEEeecccCCccccCCCchH--HHHHHHh-hhcCCcEEEEEe
Q 011012 304 DETFKASALKLVRGEALIINCMLHLPHFSYRAPDSI--ASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 304 ~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~--~~fL~~i-r~L~PkvvtlvE 358 (495)
..+.-+. . -..=++|++++.. |.. .+..+ ..|++.+ +.|+|.-++++.
T Consensus 141 ~~~~l~~-~-~~~fD~Ii~d~~~--~~~---~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 141 ASKFLEN-V-TNTYDVIIVDSSD--PIG---PAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp HHHHHHH-C-CSCEEEEEEECCC--TTT---GGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHh-C-CCCceEEEEcCCC--CCC---cchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 1111000 0 0112566666532 211 11222 5777776 569999877765
No 139
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=26.08 E-value=1.5e+02 Score=27.48 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=53.5
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~ 302 (495)
.-.|+|+|.+.|.--. .|+.+- | +..+||+|+. +...++. ..+.++..|++ .+|... +
T Consensus 64 ~~~VLdiG~G~G~~~~----~la~~~--~--~~~~v~~vD~------s~~~~~~----a~~~~~~~g~~~~v~~~~~--d 123 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTI----WMAREL--P--ADGQLLTLEA------DAHHAQV----ARENLQLAGVDQRVTLREG--P 123 (248)
T ss_dssp CSEEEEECCTTSHHHH----HHHTTS--C--TTCEEEEEEC------CHHHHHH----HHHHHHHTTCTTTEEEEES--C
T ss_pred CCEEEEecCCchHHHH----HHHHhC--C--CCCEEEEEEC------CHHHHHH----HHHHHHHcCCCCcEEEEEc--C
Confidence 3479999999886543 344432 2 3578999974 2333433 34445556765 666532 2
Q ss_pred Ccccccccccc-ccCCceEEEeecccCCccccCCCchHHHHHHH-hhhcCCcEEEEEe
Q 011012 303 SDETFKASALK-LVRGEALIINCMLHLPHFSYRAPDSIASFLSG-AKTLNPRLVTLVE 358 (495)
Q Consensus 303 ~~e~l~~~~L~-l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~-ir~L~PkvvtlvE 358 (495)
..++-+ .+. ...=+.|+++.. ......+|+. .+-|+|.-+++++
T Consensus 124 -~~~~l~-~~~~~~~fD~V~~d~~----------~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 124 -ALQSLE-SLGECPAFDLIFIDAD----------KPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp -HHHHHH-TCCSCCCCSEEEECSC----------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred -HHHHHH-hcCCCCCeEEEEECCc----------hHHHHHHHHHHHHhcCCCeEEEEe
Confidence 111111 010 012245555431 1233455655 4779999888774
No 140
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=26.06 E-value=5e+02 Score=25.94 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=63.8
Q ss_pred hhHHhHhhhhc------CCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 011012 212 ANQAILEAVAN------DRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVA 285 (495)
Q Consensus 212 ANqAILEA~~g------~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~ 285 (495)
..+.+++.+.. .+.-+|+|+|.|.|.- ...|+.+ | .+||+|+. +...++.+.+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~----~~~la~~--g-----~~V~gvDi------s~~al~~A~~---- 273 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGAL----TLPLARM--G-----AEVVGVED------DLASVLSLQK---- 273 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTT----HHHHHHT--T-----CEEEEEES------BHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHH----HHHHHHc--C-----CEEEEEEC------CHHHHHHHHH----
Confidence 33556666532 2345899999999864 3444444 2 37999963 3344444433
Q ss_pred HHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEEe
Q 011012 286 FAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLVE 358 (495)
Q Consensus 286 fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~PkvvtlvE 358 (495)
-++..|+..+|.... ..+.... -..=++|+.|.. +|+...........+++.+ +.|+|.-.+++.
T Consensus 274 n~~~~~~~v~~~~~D---~~~~~~~---~~~fD~Ii~npp--~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 274 GLEANALKAQALHSD---VDEALTE---EARFDIIVTNPP--FHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp HHHHTTCCCEEEECS---TTTTSCT---TCCEEEEEECCC--CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHcCCCeEEEEcc---hhhcccc---CCCeEEEEECCc--hhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 345567776665432 2222111 011245565554 4553222234456677655 669998666654
No 141
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=24.98 E-value=1.6e+02 Score=25.01 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=52.2
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLD 302 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~ 302 (495)
.-+|+|+|.|.|.-- ..++.++ .-++|||+. +...++.+.++ ++..|++ .+|...
T Consensus 45 ~~~vLD~GcG~G~~~----~~~~~~~------~~~v~~vD~------~~~~~~~a~~~----~~~~~~~~~~~~~~~--- 101 (187)
T 2fhp_A 45 GGMALDLYSGSGGLA----IEAVSRG------MDKSICIEK------NFAALKVIKEN----IAITKEPEKFEVRKM--- 101 (187)
T ss_dssp SCEEEETTCTTCHHH----HHHHHTT------CSEEEEEES------CHHHHHHHHHH----HHHHTCGGGEEEEES---
T ss_pred CCCEEEeCCccCHHH----HHHHHcC------CCEEEEEEC------CHHHHHHHHHH----HHHhCCCcceEEEEC---
Confidence 347999999988632 2234432 257999973 33344443333 3444653 566542
Q ss_pred Ccccccccccc--ccCCceEEEeecccCCccccCCCchHHHHHHH---hhhcCCcEEEEEeecC
Q 011012 303 SDETFKASALK--LVRGEALIINCMLHLPHFSYRAPDSIASFLSG---AKTLNPRLVTLVEEET 361 (495)
Q Consensus 303 ~~e~l~~~~L~--l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~---ir~L~PkvvtlvE~ea 361 (495)
+..++.+. +. -..=+.++.|..+..+ ....+++. .+-|+|.-+++++...
T Consensus 102 d~~~~~~~-~~~~~~~fD~i~~~~~~~~~--------~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 102 DANRALEQ-FYEEKLQFDLVLLDPPYAKQ--------EIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CHHHHHHH-HHHTTCCEEEEEECCCGGGC--------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cHHHHHHH-HHhcCCCCCEEEECCCCCch--------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 22221110 10 0111456666543311 12344444 4568999777776444
No 142
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=24.98 E-value=1.4e+02 Score=26.13 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=40.8
Q ss_pred hhhhhHHhHhhhh--cCCeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 011012 209 HFTANQAILEAVA--NDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAF 286 (495)
Q Consensus 209 hftANqAILEA~~--g~~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~f 286 (495)
+....+.+++.+. -.+.-.|+|+|.|.|. +...|+.++ ..++|||+. +...++.+ .+.
T Consensus 43 ~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~----~~~~l~~~~------~~~v~~vD~------s~~~~~~a----~~~ 102 (205)
T 3grz_A 43 NHQTTQLAMLGIERAMVKPLTVADVGTGSGI----LAIAAHKLG------AKSVLATDI------SDESMTAA----EEN 102 (205)
T ss_dssp CHHHHHHHHHHHHHHCSSCCEEEEETCTTSH----HHHHHHHTT------CSEEEEEES------CHHHHHHH----HHH
T ss_pred CCccHHHHHHHHHHhccCCCEEEEECCCCCH----HHHHHHHCC------CCEEEEEEC------CHHHHHHH----HHH
Confidence 3344556666665 2345689999999884 334466542 358999974 23334333 334
Q ss_pred HHHcCCC-eEEee
Q 011012 287 AASIGQP-FSFHQ 298 (495)
Q Consensus 287 A~slgvp-FeF~~ 298 (495)
++..|++ ++|..
T Consensus 103 ~~~~~~~~v~~~~ 115 (205)
T 3grz_A 103 AALNGIYDIALQK 115 (205)
T ss_dssp HHHTTCCCCEEEE
T ss_pred HHHcCCCceEEEe
Confidence 4555665 66654
No 143
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=24.58 E-value=92 Score=28.30 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=48.9
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCc
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSD 304 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~ 304 (495)
.-+|+|+|.|.|. +...|+.+ |. ++|||+. +...+ +.|+.. ++|... +.
T Consensus 42 ~~~vLDiGcG~G~----~~~~l~~~--~~-----~v~gvD~------s~~~~--------~~a~~~---~~~~~~---d~ 90 (240)
T 3dli_A 42 CRRVLDIGCGRGE----FLELCKEE--GI-----ESIGVDI------NEDMI--------KFCEGK---FNVVKS---DA 90 (240)
T ss_dssp CSCEEEETCTTTH----HHHHHHHH--TC-----CEEEECS------CHHHH--------HHHHTT---SEEECS---CH
T ss_pred CCeEEEEeCCCCH----HHHHHHhC--CC-----cEEEEEC------CHHHH--------HHHHhh---cceeec---cH
Confidence 3578999988875 34556655 32 4799963 22233 333333 333322 11
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+++. ..+.++..=+|-|...|||+. +..+..+|+.+ +.|+|.-++++
T Consensus 91 ~~~~---~~~~~~~fD~i~~~~~l~~~~---~~~~~~~l~~~~~~LkpgG~l~~ 138 (240)
T 3dli_A 91 IEYL---KSLPDKYLDGVMISHFVEHLD---PERLFELLSLCYSKMKYSSYIVI 138 (240)
T ss_dssp HHHH---HTSCTTCBSEEEEESCGGGSC---GGGHHHHHHHHHHHBCTTCCEEE
T ss_pred HHHh---hhcCCCCeeEEEECCchhhCC---cHHHHHHHHHHHHHcCCCcEEEE
Confidence 1110 011223222333456678883 22456677766 66999744444
No 144
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=24.42 E-value=1.4e+02 Score=26.99 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=52.5
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCeEEeeeecCCcc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPFSFHQCRLDSDE 305 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpFeF~~v~~~~~e 305 (495)
-.|+|+|.|.|. +...|+.+ + + ++|||+. +...++...+++ . .-..+|.... ..
T Consensus 58 ~~vLD~GcG~G~----~~~~la~~--~---~--~v~gvD~------s~~~~~~a~~~~----~--~~~~~~~~~d---~~ 111 (245)
T 3ggd_A 58 LPLIDFACGNGT----QTKFLSQF--F---P--RVIGLDV------SKSALEIAAKEN----T--AANISYRLLD---GL 111 (245)
T ss_dssp SCEEEETCTTSH----HHHHHHHH--S---S--CEEEEES------CHHHHHHHHHHS----C--CTTEEEEECC---TT
T ss_pred CeEEEEcCCCCH----HHHHHHHh--C---C--CEEEEEC------CHHHHHHHHHhC----c--ccCceEEECc---cc
Confidence 458999998884 44455554 2 3 6899974 233444433332 1 1245554332 22
Q ss_pred ccccccccccCCc-eEEEeecccCCccccCCCchHHHHHHHh-hhcCCcE-EEEEee
Q 011012 306 TFKASALKLVRGE-ALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRL-VTLVEE 359 (495)
Q Consensus 306 ~l~~~~L~l~~gE-aLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkv-vtlvE~ 359 (495)
++.... ....+. .-+|-|...+||+. +.....+|+.+ +.|+|.- +++++.
T Consensus 112 ~~~~~~-~~~~~~~~d~v~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 112 VPEQAA-QIHSEIGDANIYMRTGFHHIP---VEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp CHHHHH-HHHHHHCSCEEEEESSSTTSC---GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cccccc-ccccccCccEEEEcchhhcCC---HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 222110 011011 22444555678873 23456677766 5689975 455553
No 145
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=24.37 E-value=3.3e+02 Score=23.16 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=49.8
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC-CeEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ-PFSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv-pFeF~~v~~~~~ 304 (495)
-+|+|+|.|.|.- ...|+.+ + -++|||+. +...++.+.+++ +..|+ ..+|.. ...
T Consensus 24 ~~vLDiGcG~G~~----~~~la~~-~------~~v~~vD~------s~~~l~~a~~~~----~~~~~~~v~~~~---~~~ 79 (185)
T 3mti_A 24 SIVVDATMGNGND----TAFLAGL-S------KKVYAFDV------QEQALGKTSQRL----SDLGIENTELIL---DGH 79 (185)
T ss_dssp CEEEESCCTTSHH----HHHHHTT-S------SEEEEEES------CHHHHHHHHHHH----HHHTCCCEEEEE---SCG
T ss_pred CEEEEEcCCCCHH----HHHHHHh-C------CEEEEEEC------CHHHHHHHHHHH----HHcCCCcEEEEe---CcH
Confidence 3689999998863 3446665 2 46899974 334455444443 34455 355543 223
Q ss_pred cccccccccccCCceEEEeecccCCccc---cCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFS---YRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~---~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
+++.. +.-.+=++++.|.. .+|+-. ...+.....+|+.+ +-|+|.-.+++
T Consensus 80 ~~l~~--~~~~~fD~v~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 80 ENLDH--YVREPIRAAIFNLG-YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp GGGGG--TCCSCEEEEEEEEC------------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHh--hccCCcCEEEEeCC-CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 33211 10011135555532 222200 00122334555555 77999865544
No 146
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=23.71 E-value=1.4e+02 Score=28.34 Aligned_cols=61 Identities=8% Similarity=0.102 Sum_probs=36.5
Q ss_pred CccchhhhhhhHHhHhhhh------cC---C-eeEE-EEcc--c-cCccch----HHHHHHHhcCCCCCCCCeEEEEEec
Q 011012 203 PYVKFGHFTANQAILEAVA------ND---R-RVHI-VDYD--I-MEGIQW----ASLMQALVSRKDGPPAPHLRITALS 264 (495)
Q Consensus 203 P~~kfahftANqAILEA~~------g~---~-~VHI-VDf~--I-~~G~QW----psLiqaLA~R~~Gpp~P~LRITgI~ 264 (495)
+.+.+.|..-+...++++. |. . +||| ||-| + -.|+.. +.|++.+.. ..- |+|+|.||-
T Consensus 105 ~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~--~~~--~~L~l~Glm 180 (256)
T 1ct5_A 105 PNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLS--EEC--KYIKLNGLM 180 (256)
T ss_dssp TTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHS--TTC--CSEEEEEEE
T ss_pred cccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHH--ccC--CCeeEEEEE
Confidence 4445555555555555442 33 2 6898 8888 3 357644 667777761 012 689999996
Q ss_pred CCC
Q 011012 265 RGG 267 (495)
Q Consensus 265 ~p~ 267 (495)
...
T Consensus 181 th~ 183 (256)
T 1ct5_A 181 TIG 183 (256)
T ss_dssp CCC
T ss_pred EEC
Confidence 543
No 147
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=23.42 E-value=1.9e+02 Score=28.32 Aligned_cols=131 Identities=7% Similarity=0.073 Sum_probs=61.4
Q ss_pred eeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHc-CCCeEEeeeecCC
Q 011012 225 RVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASI-GQPFSFHQCRLDS 303 (495)
Q Consensus 225 ~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~sl-gvpFeF~~v~~~~ 303 (495)
.-+|+|+|.|.|. +...|+.+. |.-+||+|+. +...++...+++.+.+..+ +-.++|.. .+
T Consensus 109 ~~~VLdIG~G~G~----~~~~l~~~~-----~~~~v~~vDi------d~~~i~~Ar~~~~~~~~~~~~~rv~~~~---~D 170 (314)
T 2b2c_A 109 PKRVLIIGGGDGG----ILREVLKHE-----SVEKVTMCEI------DEMVIDVAKKFLPGMSCGFSHPKLDLFC---GD 170 (314)
T ss_dssp CCEEEEESCTTSH----HHHHHTTCT-----TCCEEEEECS------CHHHHHHHHHHCTTTSGGGGCTTEEEEC---SC
T ss_pred CCEEEEEcCCcCH----HHHHHHHcC-----CCCEEEEEEC------CHHHHHHHHHHHHHhccccCCCCEEEEE---Ch
Confidence 3479999998885 455666552 4578999963 3334444444433221111 12344432 11
Q ss_pred ccc-cccccccccCCceEEEeecccCCccccCCCchH--HHHHHHh-hhcCCcEEEEEeecCCCCCCCC-hHHHHHHHHH
Q 011012 304 DET-FKASALKLVRGEALIINCMLHLPHFSYRAPDSI--ASFLSGA-KTLNPRLVTLVEEETGPIGDGG-FVSRFMDSLH 378 (495)
Q Consensus 304 ~e~-l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~--~~fL~~i-r~L~PkvvtlvE~ea~~n~~p~-F~~RF~eaL~ 378 (495)
..+ +.. .-..=++|++|.. +++. .+..+ ..|++.+ +.|+|.-+++++.+. +. -...+.....
T Consensus 171 ~~~~l~~---~~~~fD~Ii~d~~---~~~~--~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~-----~~~~~~~~~~~~~ 237 (314)
T 2b2c_A 171 GFEFLKN---HKNEFDVIITDSS---DPVG--PAESLFGQSYYELLRDALKEDGILSSQGES-----VWLHLPLIAHLVA 237 (314)
T ss_dssp HHHHHHH---CTTCEEEEEECCC------------------HHHHHHHHEEEEEEEEEECCC-----TTTCHHHHHHHHH
T ss_pred HHHHHHh---cCCCceEEEEcCC---CCCC--cchhhhHHHHHHHHHhhcCCCeEEEEECCC-----cccCHHHHHHHHH
Confidence 111 110 0011246666652 2221 11111 4677665 669999888775321 21 1334445555
Q ss_pred HHHHHHhh
Q 011012 379 HYSAVYDS 386 (495)
Q Consensus 379 yYsalFDS 386 (495)
+...+|..
T Consensus 238 ~l~~vF~~ 245 (314)
T 2b2c_A 238 FNRKIFPA 245 (314)
T ss_dssp HHHHHCSE
T ss_pred HHHHHCCc
Confidence 55555554
No 148
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=22.21 E-value=3.1e+02 Score=27.13 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=55.9
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--CeEEeeeec
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--PFSFHQCRL 301 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--pFeF~~v~~ 301 (495)
..-.|+|.|.|.|. +.-.+|.+. + .-+|+|++. +...++.+.++ ++..|+ ..+|....
T Consensus 217 ~~~~vLD~gCGsG~----~~i~~a~~~--~---~~~v~g~Di------s~~~l~~A~~n----~~~~gl~~~i~~~~~D- 276 (373)
T 3tm4_A 217 DGGSVLDPMCGSGT----ILIELALRR--Y---SGEIIGIEK------YRKHLIGAEMN----ALAAGVLDKIKFIQGD- 276 (373)
T ss_dssp CSCCEEETTCTTCH----HHHHHHHTT--C---CSCEEEEES------CHHHHHHHHHH----HHHTTCGGGCEEEECC-
T ss_pred CCCEEEEccCcCcH----HHHHHHHhC--C---CCeEEEEeC------CHHHHHHHHHH----HHHcCCCCceEEEECC-
Confidence 34568999999885 444455542 2 347999974 33444444433 455677 56665432
Q ss_pred CCccccccccccccCCceEEEeecccCCccccC-CCch-HHHHHHHhhh-cCCcEEEEE
Q 011012 302 DSDETFKASALKLVRGEALIINCMLHLPHFSYR-APDS-IASFLSGAKT-LNPRLVTLV 357 (495)
Q Consensus 302 ~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~-~~~~-~~~fL~~ir~-L~Pkvvtlv 357 (495)
..++... ...=++|+.|-.+... +... .... ...+++.+++ |++.+++++
T Consensus 277 --~~~~~~~---~~~fD~Ii~npPyg~r-~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~ 329 (373)
T 3tm4_A 277 --ATQLSQY---VDSVDFAISNLPYGLK-IGKKSMIPDLYMKFFNELAKVLEKRGVFIT 329 (373)
T ss_dssp --GGGGGGT---CSCEEEEEEECCCC-------CCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred --hhhCCcc---cCCcCEEEECCCCCcc-cCcchhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 2222211 1122577777666542 2111 0011 2567777766 666666664
No 149
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.16 E-value=3.3e+02 Score=22.30 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEeeeecCCccccccccccccCCceEEEeecccCCccccCCCc-hHHHHHHHhhh-cCCc
Q 011012 275 TVQETGRRLVAFAASIGQPFSFHQCRLDSDETFKASALKLVRGEALIINCMLHLPHFSYRAPD-SIASFLSGAKT-LNPR 352 (495)
Q Consensus 275 ~l~etg~rL~~fA~slgvpFeF~~v~~~~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~-~~~~fL~~ir~-L~Pk 352 (495)
.-+.+.+.+.+-+++.|+..+...+. +.++.. +...+.|++=+.-.-... .|. .+..|++.++. ++-+
T Consensus 11 nT~~iA~~ia~~l~~~g~~v~~~~~~-----~~~~~~--l~~~d~iiig~pty~~g~---~p~~~~~~fl~~l~~~l~~k 80 (138)
T 5nul_A 11 NTEKMAELIAKGIIESGKDVNTINVS-----DVNIDE--LLNEDILILGCSAMTDEV---LEESEFEPFIEEISTKISGK 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEGG-----GCCHHH--HTTCSEEEEEECCBTTTB---CCTTTHHHHHHHHGGGCTTC
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEEhh-----hCCHHH--HhhCCEEEEEcCccCCCC---CChHHHHHHHHHHHhhcCCC
Confidence 44567778888888888876655432 223332 334566666554322221 243 68999999876 5555
Q ss_pred EEEEE
Q 011012 353 LVTLV 357 (495)
Q Consensus 353 vvtlv 357 (495)
.+.+.
T Consensus 81 ~~~~f 85 (138)
T 5nul_A 81 KVALF 85 (138)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
No 150
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=21.70 E-value=4e+02 Score=26.85 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred EEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCC--eEEeeeecCCc
Q 011012 227 HIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQP--FSFHQCRLDSD 304 (495)
Q Consensus 227 HIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvp--FeF~~v~~~~~ 304 (495)
+|+|+|-|.| .-++ +|.|. |. -|++||+.. +. + +. ..+.++..|+. .++.. ...
T Consensus 86 ~VLDvG~GtG--iLs~---~Aa~a-GA----~~V~ave~s-----~~--~-~~---a~~~~~~n~~~~~i~~i~---~~~ 141 (376)
T 4hc4_A 86 TVLDVGAGTG--ILSI---FCAQA-GA----RRVYAVEAS-----AI--W-QQ---AREVVRFNGLEDRVHVLP---GPV 141 (376)
T ss_dssp EEEEETCTTS--HHHH---HHHHT-TC----SEEEEEECS-----TT--H-HH---HHHHHHHTTCTTTEEEEE---SCT
T ss_pred EEEEeCCCcc--HHHH---HHHHh-CC----CEEEEEeCh-----HH--H-HH---HHHHHHHcCCCceEEEEe---eee
Confidence 5888888777 3344 44454 33 378999731 11 1 22 23445556664 44433 223
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEE
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTL 356 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtl 356 (495)
+++.. . +.+=+|-|..--.-|.. .+.+..+|... |-|+|.-+++
T Consensus 142 ~~~~l-----p-e~~DvivsE~~~~~l~~--e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 142 ETVEL-----P-EQVDAIVSEWMGYGLLH--ESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TTCCC-----S-SCEEEEECCCCBTTBTT--TCSHHHHHHHHHHHEEEEEEEE
T ss_pred eeecC-----C-ccccEEEeecccccccc--cchhhhHHHHHHhhCCCCceEC
Confidence 33332 1 11112222221222322 34578888877 6688886654
No 151
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=21.63 E-value=2.1e+02 Score=26.53 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=24.2
Q ss_pred ceEEEeecccCCccccCCCchHHHHHHHh-hhcCCcEEEEE
Q 011012 318 EALIINCMLHLPHFSYRAPDSIASFLSGA-KTLNPRLVTLV 357 (495)
Q Consensus 318 EaLaVN~~~~Lh~L~~~~~~~~~~fL~~i-r~L~Pkvvtlv 357 (495)
..=+|-|.+.|||+... ......+|+.| |-|+|.-..+.
T Consensus 156 ~fD~V~~~~~l~~i~~~-~~~~~~~l~~i~r~LKPGG~li~ 195 (263)
T 2a14_A 156 LADCVLTLLAMECACCS-LDAYRAALCNLASLLKPGGHLVT 195 (263)
T ss_dssp CEEEEEEESCHHHHCSS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCEeeehHHHHHhcCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 34467777888887322 23445667666 55999854444
No 152
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=21.35 E-value=97 Score=26.35 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=34.1
Q ss_pred EEEEcccc-CccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCCCe
Q 011012 227 HIVDYDIM-EGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQPF 294 (495)
Q Consensus 227 HIVDf~I~-~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgvpF 294 (495)
=|||++-. ...+|..|++.|.++ .|++-||.- ..+ . ++.+.|+..|+|+
T Consensus 50 VVlDl~~l~~~~dl~~L~~~l~~~-------gl~~vGV~g----~~~-~-------~~~~~a~~~GLp~ 99 (120)
T 3ghf_A 50 VVINVSGLESPVNWPELHKIVTST-------GLRIIGVSG----CKD-A-------SLKVEIDRMGLPL 99 (120)
T ss_dssp EEEEEEECCSSCCHHHHHHHHHTT-------TCEEEEEES----CCC-H-------HHHHHHHHHTCCE
T ss_pred EEEEccccCChHHHHHHHHHHHHc-------CCEEEEEeC----CCc-H-------HHHHHHHHCCCCc
Confidence 37888743 468999999999876 388889942 111 1 2456788889985
No 153
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=20.81 E-value=5.5e+02 Score=24.41 Aligned_cols=132 Identities=10% Similarity=0.079 Sum_probs=66.0
Q ss_pred eEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC-CCeEEeeeecCCc
Q 011012 226 VHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG-QPFSFHQCRLDSD 304 (495)
Q Consensus 226 VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg-vpFeF~~v~~~~~ 304 (495)
-+|+|+|.|.|. +...|+.+. |.-+||+|+. +...++...+++.+++..++ -.+++..- +.
T Consensus 92 ~~VLdiG~G~G~----~~~~l~~~~-----~~~~v~~vDi------d~~~~~~a~~~~~~~~~~~~~~~v~~~~~---D~ 153 (296)
T 1inl_A 92 KKVLIIGGGDGG----TLREVLKHD-----SVEKAILCEV------DGLVIEAARKYLKQTSCGFDDPRAEIVIA---NG 153 (296)
T ss_dssp CEEEEEECTTCH----HHHHHTTST-----TCSEEEEEES------CHHHHHHHHHHCHHHHGGGGCTTEEEEES---CH
T ss_pred CEEEEEcCCcCH----HHHHHHhcC-----CCCEEEEEEC------CHHHHHHHHHHhHhhccccCCCceEEEEC---cH
Confidence 579999999885 455666653 3468999963 34456666666655544342 23555431 11
Q ss_pred cccccccccccCCceEEEeecccCCccccCCCch--HHHHHHHh-hhcCCcEEEEEeecCCCCCCCCh-HHHHHHHHHHH
Q 011012 305 ETFKASALKLVRGEALIINCMLHLPHFSYRAPDS--IASFLSGA-KTLNPRLVTLVEEETGPIGDGGF-VSRFMDSLHHY 380 (495)
Q Consensus 305 e~l~~~~L~l~~gEaLaVN~~~~Lh~L~~~~~~~--~~~fL~~i-r~L~PkvvtlvE~ea~~n~~p~F-~~RF~eaL~yY 380 (495)
.++-+. . -..=++|++|... |... .+.. ...|++.+ +.|+|.-+++++... |.+ ...+.+.+...
T Consensus 154 ~~~l~~-~-~~~fD~Ii~d~~~--~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~-----~~~~~~~~~~~~~~l 222 (296)
T 1inl_A 154 AEYVRK-F-KNEFDVIIIDSTD--PTAG--QGGHLFTEEFYQACYDALKEDGVFSAETED-----PFYDIGWFKLAYRRI 222 (296)
T ss_dssp HHHGGG-C-SSCEEEEEEEC--------------CCSHHHHHHHHHHEEEEEEEEEECCC-----TTTTHHHHHHHHHHH
T ss_pred HHHHhh-C-CCCceEEEEcCCC--cccC--chhhhhHHHHHHHHHHhcCCCcEEEEEccC-----cccCHHHHHHHHHHH
Confidence 111000 0 0112566666432 1111 0111 25677665 669999888775321 322 34455555445
Q ss_pred HHHHhh
Q 011012 381 SAVYDS 386 (495)
Q Consensus 381 salFDS 386 (495)
...|..
T Consensus 223 ~~~F~~ 228 (296)
T 1inl_A 223 SKVFPI 228 (296)
T ss_dssp HHHCSE
T ss_pred HHHCCc
Confidence 555543
No 154
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=20.42 E-value=34 Score=36.52 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=49.2
Q ss_pred CeeEEEEccccCccchHHHHHHHhcCCCCCCCCeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcC-CCeEEeeeecC
Q 011012 224 RRVHIVDYDIMEGIQWASLMQALVSRKDGPPAPHLRITALSRGGSGRRSISTVQETGRRLVAFAASIG-QPFSFHQCRLD 302 (495)
Q Consensus 224 ~~VHIVDf~I~~G~QWpsLiqaLA~R~~Gpp~P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slg-vpFeF~~v~~~ 302 (495)
+-+.|+|+|.|-|. |-..||.+ | -++|||+.. ...++. . ...|+.-| +..+|....
T Consensus 66 ~~~~vLDvGCG~G~----~~~~la~~--g-----a~V~giD~~------~~~i~~-a---~~~a~~~~~~~~~~~~~~-- 122 (569)
T 4azs_A 66 RPLNVLDLGCAQGF----FSLSLASK--G-----ATIVGIDFQ------QENINV-C---RALAEENPDFAAEFRVGR-- 122 (569)
T ss_dssp SCCEEEEETCTTSH----HHHHHHHT--T-----CEEEEEESC------HHHHHH-H---HHHHHTSTTSEEEEEECC--
T ss_pred CCCeEEEECCCCcH----HHHHHHhC--C-----CEEEEECCC------HHHHHH-H---HHHHHhcCCCceEEEECC--
Confidence 45789999998885 77888876 3 258999742 222322 2 23455555 677887543
Q ss_pred CccccccccccccCCceEEEeecccCCccc
Q 011012 303 SDETFKASALKLVRGEALIINCMLHLPHFS 332 (495)
Q Consensus 303 ~~e~l~~~~L~l~~gEaLaVN~~~~Lh~L~ 332 (495)
.|++.. ...++..=||-|+=-|||+.
T Consensus 123 -~~~~~~---~~~~~~fD~v~~~e~~ehv~ 148 (569)
T 4azs_A 123 -IEEVIA---ALEEGEFDLAIGLSVFHHIV 148 (569)
T ss_dssp -HHHHHH---HCCTTSCSEEEEESCHHHHH
T ss_pred -HHHHhh---hccCCCccEEEECcchhcCC
Confidence 333311 11234444666777899984
No 155
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=20.35 E-value=3.3e+02 Score=27.45 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=29.6
Q ss_pred CeEEEEEecCCCCCCCChHHHHHHHHHHHHHHHHcCC--------CeEEeeee
Q 011012 256 PHLRITALSRGGSGRRSISTVQETGRRLVAFAASIGQ--------PFSFHQCR 300 (495)
Q Consensus 256 P~LRITgI~~p~~~~~~~~~l~etg~rL~~fA~slgv--------pFeF~~v~ 300 (495)
|.+||+-|..= +.+...++...+++.+.-+.++- =|.||.+-
T Consensus 158 ~~i~i~~i~~~---~~~p~~I~ala~~I~~~l~~~~~~~~~~~~llfSaHglP 207 (362)
T 1lbq_A 158 RSISWSVIDRW---PTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLP 207 (362)
T ss_dssp CCSEEEEECCC---TTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCB
T ss_pred CCceEEEecCC---CCCHHHHHHHHHHHHHHHHhcCcccCCCeEEEEecCCCc
Confidence 57888888531 45667788888888887776643 38888753
No 156
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=20.25 E-value=1.5e+02 Score=26.92 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=15.6
Q ss_pred cchhhhhccCCceeccCCc
Q 011012 427 YSWGDWLGVVGFKPVNISF 445 (495)
Q Consensus 427 ~~W~~rm~~AGF~~v~ls~ 445 (495)
+.|...++.+||+.+.+..
T Consensus 220 ~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 220 ETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp HHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEE
Confidence 4888889999999887664
No 157
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=20.13 E-value=3.9e+02 Score=23.57 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=16.3
Q ss_pred cccchhhhhccCCceeccCCc
Q 011012 425 EVYSWGDWLGVVGFKPVNISF 445 (495)
Q Consensus 425 ~~~~W~~rm~~AGF~~v~ls~ 445 (495)
+...|...++++||+.+.+..
T Consensus 167 ~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 167 STEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp CHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEec
Confidence 456788889999998877654
Done!