BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011014
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 63 MIKFEGGYTVETV--FEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGH 120
++ G +TV F+G + P +AV G + V D NN KL AGS
Sbjct: 89 VVTLAAGSNNQTVLPFDGLNY---PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145
Query: 121 VDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 157
G +N P G+AVD+ GN+Y+ DT N + K+
Sbjct: 146 FTG------LNDPDGVAVDNSGNVYVTDTDNNRVVKL 176
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 63 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVD 122
++K G T TV + +P +AV +G + V D NN L AGS D
Sbjct: 48 VVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFD 105
Query: 123 GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 182
G +N+P+GLAVD +G +Y+AD N + K +A G ++ V G
Sbjct: 106 G------LNYPEGLAVDTQGAVYVADRGNNRVVK--------LAAGSKTQTVLPFTG--- 148
Query: 183 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220
ND D V V +S ++ V D N + +++ ++
Sbjct: 149 ----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 39/148 (26%)
Query: 76 FEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGAR------ 129
F G F + P VAV +G + V + EG YG V G+
Sbjct: 17 FTGIDFRLSPSGVAVDSAGNVYV--------------TSEGMYGRVVKLATGSTGTTVLP 62
Query: 130 ---MNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKF 186
+ P+GLAVD G +Y+ D N V T+A G ++ V DG +
Sbjct: 63 FNGLYQPQGLAVDGAGTVYVTDFNNR---------VVTLAAGSNNQTVLPFDGLNYPEGL 113
Query: 187 SNDFDVVYVGSSCSLLVIDRGNQAIREI 214
+ D + ++ V DRGN + ++
Sbjct: 114 AVD-------TQGAVYVADRGNNRVVKL 134
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNI 144
P+ +AV +G + V + N KL+AGS G +N P +AVD +
Sbjct: 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG------LNTPLAVAVDSDRTV 247
Query: 145 YIADTMNMAIRKIS 158
Y+AD N + K++
Sbjct: 248 YVADRGNDRVVKLT 261
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 105 SRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAV--------DDRGNIYIADTMNMAIR 155
+ P +V G +G VDG + AR + P+ G V D + Y D N IR
Sbjct: 307 TTPYIVCGQ-QGAKDWVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365
Query: 156 KISDTGVTTIAGGKWSRGV-GHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 213
++ G T G+ S G G+ DG ++A+F++ +VY + DR N+ IR+
Sbjct: 366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425
Query: 214 I 214
I
Sbjct: 426 I 426
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 122 DGRPRGARMNHPKGLAVDDRGNIYIADTMN-MAIRK--ISDTGVTTIAGGKWSRGVGHVD 178
DG A P G VD+ GN YI D +RK I D V+T+AG +D
Sbjct: 314 DGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ--VDVASQID 371
Query: 179 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 213
G +A F+ +D+ Y G + + +AIR+
Sbjct: 372 GTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRK 405
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 120 HVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK 156
+DG P A N+P + D G +IA+ AIRK
Sbjct: 369 QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405
>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
Length = 433
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 107 PKLVAG---SPEGYYGHVDGRPRGARMNHP-KGLAV--------DDRGNIYIADTMNMAI 154
P +V G SP G VDG GAR+ P +G+ V +D + Y D + +
Sbjct: 312 PYIVCGQHSSP----GWVDGXGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367
Query: 155 RKISDTG-VTTIAGGKWSRGVGHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 212
R ++ G VTT AG SR G+VDG A F++ + Y + D N +R
Sbjct: 368 RVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDXKRKCFYIGDCDNHRVR 427
Query: 213 EI 214
+I
Sbjct: 428 KI 429
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 280 PPKSARPPLVPTEDDFEKP-EEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV 333
PP P+ + EKP +EGFF + R +L T +G G S+FR K +
Sbjct: 172 PPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLG---SGFISLFRGKKI 223
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 116 GYYGHVDGRPRGAR-MNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 170
G+Y V GRP+ + + P L + DR I T++ + D GVTT+ W
Sbjct: 80 GHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTG--TVQDAGVTTLGDDNW 133
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 106 RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTI 165
R +++ G +G ++G+ P G+AV+ + +I +ADT N I+ G
Sbjct: 10 RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 64
Query: 166 AGGKWSRGVGHVDGPSEDAKFSNDFDVV 193
G+ + + P+ A N D++
Sbjct: 65 QFGECGKRDSQLLYPNRVAVVRNSGDII 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,838,548
Number of Sequences: 62578
Number of extensions: 555976
Number of successful extensions: 1145
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 24
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)