Query 011014
Match_columns 495
No_of_seqs 307 out of 2151
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.8 3E-17 6.6E-22 191.5 26.3 230 25-262 623-891 (1057)
2 PLN02919 haloacid dehalogenase 99.7 1.3E-16 2.7E-21 186.4 23.0 254 38-309 698-984 (1057)
3 KOG4659 Uncharacterized conser 99.4 6.4E-12 1.4E-16 142.4 18.9 180 67-253 391-616 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.4 5.3E-11 1.2E-15 116.6 19.2 153 84-259 41-213 (246)
5 PF08450 SGL: SMP-30/Gluconola 99.3 9.9E-11 2.1E-15 114.7 20.1 146 81-248 84-245 (246)
6 KOG4659 Uncharacterized conser 99.2 5.6E-11 1.2E-15 135.0 12.9 188 23-217 472-691 (1899)
7 TIGR02604 Piru_Ver_Nterm putat 98.8 2.5E-07 5.3E-12 97.0 18.5 159 79-254 10-208 (367)
8 COG3386 Gluconolactonase [Carb 98.7 6.8E-07 1.5E-11 91.9 18.7 155 84-262 68-244 (307)
9 COG3391 Uncharacterized conser 98.7 7.3E-07 1.6E-11 94.0 17.9 150 83-256 74-236 (381)
10 COG3391 Uncharacterized conser 98.7 1.6E-06 3.5E-11 91.5 19.2 151 82-253 115-277 (381)
11 PF01436 NHL: NHL repeat; Int 98.6 3.5E-08 7.6E-13 65.8 4.0 28 130-157 1-28 (28)
12 COG3386 Gluconolactonase [Carb 98.6 1.3E-06 2.7E-11 89.9 16.7 157 82-252 110-279 (307)
13 PF10282 Lactonase: Lactonase, 98.4 1.7E-05 3.8E-10 82.2 18.7 167 82-258 143-321 (345)
14 KOG1520 Predicted alkaloid syn 98.4 3.1E-06 6.7E-11 88.2 12.4 142 83-246 115-281 (376)
15 COG4257 Vgb Streptogramin lyas 98.4 1.7E-05 3.6E-10 79.7 16.2 162 82-262 103-306 (353)
16 COG4257 Vgb Streptogramin lyas 98.4 1E-05 2.2E-10 81.1 14.7 147 82-254 61-213 (353)
17 TIGR02604 Piru_Ver_Nterm putat 98.3 2.5E-05 5.5E-10 81.9 18.0 170 83-254 124-345 (367)
18 KOG1214 Nidogen and related ba 98.3 8.9E-06 1.9E-10 90.5 12.9 155 82-262 1067-1229(1289)
19 PF10282 Lactonase: Lactonase, 98.2 0.00025 5.5E-09 73.6 21.1 159 81-254 85-270 (345)
20 PRK11028 6-phosphogluconolacto 98.1 0.00064 1.4E-08 69.3 23.1 162 83-254 126-299 (330)
21 PF01436 NHL: NHL repeat; Int 98.1 3.4E-06 7.4E-11 56.2 4.1 28 186-214 1-28 (28)
22 KOG1520 Predicted alkaloid syn 98.1 0.0003 6.5E-09 73.6 19.3 119 131-264 115-254 (376)
23 KOG1214 Nidogen and related ba 98.1 4.1E-05 8.9E-10 85.5 13.1 158 83-264 1025-1191(1289)
24 PRK11028 6-phosphogluconolacto 98.0 0.00031 6.6E-09 71.7 18.2 157 83-258 35-204 (330)
25 PF03088 Str_synth: Strictosid 97.8 9.1E-05 2E-09 62.9 7.8 67 135-218 2-88 (89)
26 PF07995 GSDH: Glucose / Sorbo 97.6 0.00088 1.9E-08 69.5 13.3 156 83-253 2-205 (331)
27 TIGR03606 non_repeat_PQQ dehyd 97.5 0.007 1.5E-07 65.6 19.6 166 68-252 18-252 (454)
28 PF07995 GSDH: Glucose / Sorbo 97.4 0.0046 1E-07 64.2 15.1 169 83-253 114-329 (331)
29 PF06977 SdiA-regulated: SdiA- 97.3 0.031 6.8E-07 56.0 20.0 154 83-248 65-240 (248)
30 PF06977 SdiA-regulated: SdiA- 97.3 0.0018 4E-08 64.8 11.1 119 84-214 119-247 (248)
31 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.13 2.9E-06 49.9 21.6 153 83-253 115-273 (300)
32 PF03088 Str_synth: Strictosid 97.1 0.0019 4.1E-08 54.9 7.3 66 87-159 2-86 (89)
33 PF02239 Cytochrom_D1: Cytochr 97.1 0.086 1.9E-06 55.8 21.2 181 36-253 7-196 (369)
34 TIGR03866 PQQ_ABC_repeats PQQ- 97.0 0.031 6.6E-07 54.4 16.0 134 83-236 157-299 (300)
35 COG3204 Uncharacterized protei 97.0 0.11 2.5E-06 53.1 19.6 153 82-249 128-303 (316)
36 COG2706 3-carboxymuconate cycl 96.9 0.23 5E-06 51.8 21.5 176 81-262 87-322 (346)
37 PF03022 MRJP: Major royal jel 96.8 0.04 8.8E-07 56.3 15.8 63 190-253 189-259 (287)
38 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.35 7.7E-06 49.9 21.5 124 82-223 137-286 (336)
39 KOG4499 Ca2+-binding protein R 96.7 0.04 8.8E-07 54.8 14.1 83 129-222 156-246 (310)
40 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.081 1.8E-06 54.4 16.2 163 80-250 20-208 (336)
41 COG2706 3-carboxymuconate cycl 96.5 0.24 5.3E-06 51.6 18.3 164 83-259 40-221 (346)
42 PF05096 Glu_cyclase_2: Glutam 96.0 1.9 4.2E-05 43.8 21.8 146 84-254 91-256 (264)
43 COG3204 Uncharacterized protei 96.0 0.2 4.4E-06 51.3 14.5 123 83-217 181-312 (316)
44 TIGR02658 TTQ_MADH_Hv methylam 95.8 0.43 9.4E-06 50.3 16.6 81 132-223 48-142 (352)
45 KOG4499 Ca2+-binding protein R 95.7 0.084 1.8E-06 52.6 10.2 76 185-262 156-244 (310)
46 TIGR03032 conserved hypothetic 95.6 0.76 1.6E-05 47.7 17.2 181 38-236 60-251 (335)
47 COG2133 Glucose/sorbosone dehy 95.3 0.7 1.5E-05 49.5 16.3 164 85-256 179-394 (399)
48 TIGR03606 non_repeat_PQQ dehyd 95.1 0.24 5.2E-06 53.9 12.3 111 129-250 28-166 (454)
49 PF05787 DUF839: Bacterial pro 94.7 0.31 6.8E-06 54.0 12.2 81 127-208 346-456 (524)
50 PF05787 DUF839: Bacterial pro 94.5 0.33 7.1E-06 53.9 11.8 81 81-161 348-469 (524)
51 TIGR02658 TTQ_MADH_Hv methylam 94.4 0.59 1.3E-05 49.3 12.8 73 132-222 246-335 (352)
52 smart00135 LY Low-density lipo 94.0 0.11 2.5E-06 36.3 4.6 33 129-161 7-40 (43)
53 PF02333 Phytase: Phytase; In 93.7 11 0.00025 40.2 21.0 114 129-262 154-291 (381)
54 KOG0318 WD40 repeat stress pro 93.7 10 0.00022 41.8 20.4 160 66-254 347-511 (603)
55 KOG1215 Low-density lipoprotei 93.6 1.2 2.7E-05 52.1 14.8 146 83-254 480-634 (877)
56 PF02239 Cytochrom_D1: Cytochr 93.3 2.7 5.9E-05 44.5 15.5 70 133-221 39-112 (369)
57 PF00058 Ldl_recept_b: Low-den 93.3 0.31 6.7E-06 35.4 5.9 38 199-236 1-41 (42)
58 PF03022 MRJP: Major royal jel 93.3 0.21 4.6E-06 51.0 6.9 59 132-205 187-253 (287)
59 COG2133 Glucose/sorbosone dehy 93.0 1.4 2.9E-05 47.4 12.6 124 83-218 239-398 (399)
60 PF13449 Phytase-like: Esteras 92.2 12 0.00027 38.6 18.3 113 132-249 86-234 (326)
61 PF01731 Arylesterase: Arylest 92.0 0.23 5.1E-06 41.9 4.4 31 128-158 51-82 (86)
62 KOG1215 Low-density lipoprotei 91.8 2.8 6.1E-05 49.2 14.5 156 84-262 438-601 (877)
63 smart00135 LY Low-density lipo 91.8 0.51 1.1E-05 32.9 5.3 36 185-220 7-42 (43)
64 COG3211 PhoX Predicted phospha 91.1 1.8 3.9E-05 48.0 11.1 69 82-150 416-519 (616)
65 PF13449 Phytase-like: Esteras 90.5 5.1 0.00011 41.5 13.5 127 83-218 85-252 (326)
66 COG3211 PhoX Predicted phospha 90.4 1.2 2.7E-05 49.3 9.0 81 126-208 412-520 (616)
67 KOG0266 WD40 repeat-containing 89.9 19 0.00042 39.0 17.9 114 84-220 205-321 (456)
68 KOG0291 WD40-repeat-containing 89.2 29 0.00064 40.0 18.5 145 82-253 350-502 (893)
69 PF06739 SBBP: Beta-propeller 89.1 0.73 1.6E-05 32.8 4.1 21 83-103 13-33 (38)
70 TIGR02276 beta_rpt_yvtn 40-res 89.0 1.1 2.4E-05 31.3 5.1 40 197-236 2-42 (42)
71 PF06739 SBBP: Beta-propeller 88.8 0.35 7.5E-06 34.5 2.3 19 131-149 13-31 (38)
72 KOG1446 Histone H3 (Lys4) meth 88.6 13 0.00027 38.6 14.0 117 84-221 142-266 (311)
73 KOG0272 U4/U6 small nuclear ri 88.2 13 0.00028 40.1 14.2 147 84-257 305-457 (459)
74 PF01731 Arylesterase: Arylest 87.8 2 4.4E-05 36.3 6.6 33 186-218 53-85 (86)
75 cd00200 WD40 WD40 domain, foun 87.8 22 0.00048 32.7 17.3 143 84-253 137-285 (289)
76 COG3823 Glutamine cyclotransfe 86.6 37 0.00079 33.9 16.8 72 141-216 185-258 (262)
77 PRK02888 nitrous-oxide reducta 86.4 6.3 0.00014 44.6 11.3 72 187-260 321-405 (635)
78 PF00058 Ldl_recept_b: Low-den 86.2 1.7 3.7E-05 31.4 4.7 37 142-194 1-40 (42)
79 KOG0266 WD40 repeat-containing 86.0 51 0.0011 35.7 18.1 152 86-262 163-320 (456)
80 KOG1274 WD40 repeat protein [G 83.8 48 0.001 39.0 16.8 111 85-221 16-130 (933)
81 KOG0318 WD40 repeat stress pro 82.2 89 0.0019 34.8 19.9 153 80-262 403-561 (603)
82 KOG3567 Peptidylglycine alpha- 81.5 3.2 6.9E-05 45.0 6.2 129 128-264 165-303 (501)
83 PRK11138 outer membrane biogen 79.9 83 0.0018 33.0 20.9 25 135-161 115-140 (394)
84 PF14269 Arylsulfotran_2: Aryl 79.0 80 0.0017 32.5 15.4 128 83-221 144-293 (299)
85 COG4246 Uncharacterized protei 79.0 39 0.00085 34.6 12.5 29 132-161 136-164 (340)
86 KOG3567 Peptidylglycine alpha- 78.9 3.1 6.7E-05 45.1 5.1 35 127-161 463-497 (501)
87 KOG0289 mRNA splicing factor [ 78.7 1.1E+02 0.0023 33.5 19.4 148 84-257 349-503 (506)
88 cd00200 WD40 WD40 domain, foun 78.6 54 0.0012 30.1 18.4 143 84-253 95-243 (289)
89 PF05096 Glu_cyclase_2: Glutam 77.8 29 0.00062 35.4 11.4 98 135-253 49-151 (264)
90 PF02333 Phytase: Phytase; In 76.9 22 0.00048 38.0 10.8 76 82-161 207-291 (381)
91 KOG1446 Histone H3 (Lys4) meth 75.9 1.1E+02 0.0023 32.0 17.3 66 85-158 103-168 (311)
92 PF06788 UPF0257: Uncharacteri 71.0 37 0.0008 34.1 10.0 45 1-56 1-45 (236)
93 PRK02888 nitrous-oxide reducta 70.6 13 0.00029 42.1 7.6 82 131-218 321-405 (635)
94 PF06433 Me-amine-dh_H: Methyl 70.3 47 0.001 35.1 11.1 115 135-262 40-168 (342)
95 KOG0286 G-protein beta subunit 69.6 1.4E+02 0.003 31.2 13.9 107 84-216 188-302 (343)
96 KOG0279 G protein beta subunit 69.0 1.5E+02 0.0032 30.7 15.6 73 85-167 66-144 (315)
97 TIGR03300 assembly_YfgL outer 67.5 1.6E+02 0.0034 30.5 20.9 25 135-161 100-125 (377)
98 PRK11138 outer membrane biogen 66.1 1.8E+02 0.0038 30.6 15.9 94 133-248 287-384 (394)
99 smart00284 OLF Olfactomedin-li 61.7 97 0.0021 31.5 11.1 118 135-259 78-207 (255)
100 PF14269 Arylsulfotran_2: Aryl 61.3 2E+02 0.0044 29.6 21.8 120 128-254 141-284 (299)
101 TIGR03032 conserved hypothetic 61.2 46 0.001 34.9 8.9 37 128-165 200-238 (335)
102 KOG0308 Conserved WD40 repeat- 60.5 2.8E+02 0.0061 31.8 15.1 110 134-263 175-299 (735)
103 PF13360 PQQ_2: PQQ-like domai 60.4 74 0.0016 30.0 9.8 63 137-220 32-97 (238)
104 TIGR02276 beta_rpt_yvtn 40-res 60.3 28 0.0006 23.9 5.2 20 142-161 4-23 (42)
105 KOG0272 U4/U6 small nuclear ri 58.8 1.7E+02 0.0036 31.9 12.6 152 84-264 263-422 (459)
106 KOG0263 Transcription initiati 52.2 4.4E+02 0.0095 30.7 16.9 100 134-254 539-644 (707)
107 KOG2110 Uncharacterized conser 51.8 1.8E+02 0.0039 31.1 11.4 71 134-220 177-251 (391)
108 PF14517 Tachylectin: Tachylec 50.8 79 0.0017 31.6 8.3 115 86-221 84-210 (229)
109 PRK02939 lipoprotein; Reviewed 49.0 2.9E+02 0.0064 27.8 13.0 45 1-56 1-45 (236)
110 COG4247 Phy 3-phytase (myo-ino 48.0 3.2E+02 0.0068 28.3 12.0 133 79-220 149-291 (364)
111 PF13360 PQQ_2: PQQ-like domai 45.5 2.6E+02 0.0057 26.2 16.9 110 130-253 112-224 (238)
112 KOG0289 mRNA splicing factor [ 45.3 2.8E+02 0.006 30.5 11.7 67 134-218 351-420 (506)
113 KOG1274 WD40 repeat protein [G 43.4 3.3E+02 0.0072 32.4 12.7 41 127-167 92-136 (933)
114 smart00108 B_lectin Bulb-type 42.7 1.8E+02 0.004 24.9 8.6 54 133-211 55-108 (114)
115 KOG0643 Translation initiation 42.6 3.2E+02 0.0069 28.4 11.1 143 135-311 15-163 (327)
116 KOG0263 Transcription initiati 41.6 1.5E+02 0.0033 34.2 9.6 70 134-221 581-653 (707)
117 KOG0319 WD40-repeat-containing 41.3 2.9E+02 0.0064 32.1 11.7 111 88-222 25-140 (775)
118 COG1520 FOG: WD40-like repeat 41.1 4.3E+02 0.0094 27.4 15.9 72 137-223 64-136 (370)
119 KOG2110 Uncharacterized conser 40.8 1.3E+02 0.0028 32.2 8.3 72 84-159 175-247 (391)
120 KOG2055 WD40 repeat protein [G 40.6 4.7E+02 0.01 28.9 12.6 150 39-217 360-512 (514)
121 KOG2096 WD40 repeat protein [G 39.4 3.1E+02 0.0068 29.1 10.7 76 133-218 89-164 (420)
122 KOG4378 Nuclear protein COP1 [ 39.3 3E+02 0.0065 30.8 11.0 68 134-220 212-283 (673)
123 KOG1963 WD40 repeat protein [G 38.5 4.9E+02 0.011 30.7 13.0 85 129-220 290-378 (792)
124 KOG1036 Mitotic spindle checkp 38.3 4.9E+02 0.011 27.3 15.6 107 135-261 99-209 (323)
125 PLN00181 protein SPA1-RELATED; 38.2 6.9E+02 0.015 29.0 18.2 67 134-218 579-649 (793)
126 smart00108 B_lectin Bulb-type 37.7 2.6E+02 0.0057 23.9 8.8 53 84-152 54-106 (114)
127 TIGR03300 assembly_YfgL outer 37.7 4.3E+02 0.0092 27.3 11.9 27 133-161 272-299 (377)
128 KOG1273 WD40 repeat protein [G 37.1 5.1E+02 0.011 27.5 11.8 114 86-222 69-188 (405)
129 PTZ00421 coronin; Provisional 36.7 6.2E+02 0.014 28.0 20.3 118 85-221 78-202 (493)
130 KOG3881 Uncharacterized conser 35.8 3.7E+02 0.008 29.0 10.8 107 134-261 206-321 (412)
131 PRK04922 tolB translocation pr 35.5 5.7E+02 0.012 27.2 18.6 28 134-161 295-325 (433)
132 KOG0772 Uncharacterized conser 35.3 3.8E+02 0.0083 30.1 11.0 126 84-221 319-460 (641)
133 KOG0281 Beta-TrCP (transducin 35.2 92 0.002 33.2 6.2 92 138-253 326-422 (499)
134 COG4946 Uncharacterized protei 34.9 6.9E+02 0.015 28.0 16.7 69 87-161 280-360 (668)
135 cd00028 B_lectin Bulb-type man 34.4 2.3E+02 0.0049 24.5 7.9 56 132-212 55-110 (116)
136 KOG0276 Vesicle coat complex C 34.0 6.4E+02 0.014 29.1 12.7 140 83-253 352-494 (794)
137 KOG0271 Notchless-like WD40 re 33.4 6.6E+02 0.014 27.3 13.9 152 85-262 118-278 (480)
138 KOG0291 WD40-repeat-containing 32.9 8.8E+02 0.019 28.6 15.0 77 127-221 347-426 (893)
139 KOG1408 WD40 repeat protein [F 32.7 1.8E+02 0.004 33.8 8.4 74 134-222 600-676 (1080)
140 KOG0772 Uncharacterized conser 32.4 7.4E+02 0.016 28.0 12.6 73 86-161 171-245 (641)
141 PTZ00421 coronin; Provisional 32.2 7.3E+02 0.016 27.4 20.4 70 85-160 128-198 (493)
142 PF07494 Reg_prop: Two compone 32.1 64 0.0014 20.4 2.9 18 84-101 6-23 (24)
143 PF14517 Tachylectin: Tachylec 31.5 1.2E+02 0.0026 30.3 6.2 72 84-158 131-204 (229)
144 cd00028 B_lectin Bulb-type man 31.1 2.7E+02 0.0059 24.0 7.8 54 84-153 55-108 (116)
145 KOG1408 WD40 repeat protein [F 30.9 2.6E+02 0.0057 32.7 9.2 76 84-167 598-681 (1080)
146 KOG4227 WD40 repeat protein [G 30.8 5.4E+02 0.012 28.1 11.0 192 132-339 58-275 (609)
147 PTZ00420 coronin; Provisional 30.4 8.5E+02 0.018 27.6 19.0 70 84-161 127-198 (568)
148 PF08139 LPAM_1: Prokaryotic m 29.0 36 0.00077 22.4 1.3 8 2-9 8-15 (25)
149 COG4946 Uncharacterized protei 28.9 8.7E+02 0.019 27.3 18.2 57 192-253 416-481 (668)
150 PF00400 WD40: WD domain, G-be 28.9 98 0.0021 20.6 3.7 27 132-158 13-39 (39)
151 PRK02889 tolB translocation pr 27.6 7.7E+02 0.017 26.2 17.6 158 86-259 199-370 (427)
152 PRK12693 flgG flagellar basal 27.1 2.9E+02 0.0063 27.7 8.2 31 83-114 90-120 (261)
153 COG3823 Glutamine cyclotransfe 27.0 6.6E+02 0.014 25.3 10.6 103 134-253 134-253 (262)
154 PRK03629 tolB translocation pr 26.8 8E+02 0.017 26.2 19.2 27 135-161 247-276 (429)
155 PLN00181 protein SPA1-RELATED; 26.2 1.1E+03 0.023 27.4 19.1 120 84-221 485-610 (793)
156 TIGR02608 delta_60_rpt delta-6 25.2 1E+02 0.0022 23.9 3.5 28 134-161 4-38 (55)
157 PF04841 Vps16_N: Vps16, N-ter 25.0 6.2E+02 0.013 27.2 10.7 36 132-167 41-78 (410)
158 PRK12694 flgG flagellar basal 24.0 3E+02 0.0065 27.7 7.7 31 83-114 90-120 (260)
159 PF05935 Arylsulfotrans: Aryls 23.8 4.4E+02 0.0095 28.9 9.5 40 129-168 269-311 (477)
160 PF07433 DUF1513: Protein of u 23.6 8.6E+02 0.019 25.4 20.0 166 69-253 87-279 (305)
161 KOG0640 mRNA cleavage stimulat 23.5 9.1E+02 0.02 25.7 13.4 148 89-257 119-288 (430)
162 KOG4649 PQQ (pyrrolo-quinoline 23.0 8.7E+02 0.019 25.3 10.6 72 137-219 142-219 (354)
163 PF05935 Arylsulfotrans: Aryls 22.8 7.3E+02 0.016 27.2 10.9 90 134-223 193-307 (477)
164 PF05586 Ant_C: Anthrax recept 22.5 81 0.0018 27.0 2.6 17 355-371 21-37 (95)
165 KOG0278 Serine/threonine kinas 22.5 8.7E+02 0.019 25.1 14.1 106 83-215 185-295 (334)
166 PRK15228 fimbrial protein SefA 22.2 1.8E+02 0.0039 26.7 4.9 22 1-23 1-22 (165)
167 PF10647 Gmad1: Lipoprotein Lp 22.0 7.8E+02 0.017 24.4 18.2 145 89-248 72-228 (253)
168 PRK04792 tolB translocation pr 21.4 1E+03 0.022 25.6 18.3 28 134-161 309-339 (448)
169 PRK12690 flgF flagellar basal 21.2 3.2E+02 0.0069 27.3 7.1 20 83-102 76-95 (238)
170 KOG0641 WD40 repeat protein [G 21.1 8.8E+02 0.019 24.6 15.9 25 134-158 235-259 (350)
171 KOG2106 Uncharacterized conser 20.8 1.2E+03 0.027 26.2 16.2 116 85-221 332-450 (626)
172 COG3495 Uncharacterized protei 20.7 73 0.0016 29.6 2.2 23 1-23 1-23 (166)
173 PRK05137 tolB translocation pr 20.6 1E+03 0.022 25.2 17.7 31 135-165 294-329 (435)
174 PRK03629 tolB translocation pr 20.4 1.1E+03 0.023 25.3 18.2 28 134-161 290-320 (429)
175 PRK05137 tolB translocation pr 20.1 1.1E+03 0.023 25.1 17.2 26 135-160 206-234 (435)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.78 E-value=3e-17 Score=191.51 Aligned_cols=230 Identities=15% Similarity=0.201 Sum_probs=153.0
Q ss_pred CCCCcceeec---eeeeeeeeccceEEEEeCCCCce--ecCCceeEe--cCCceEEEeecCCCCCCCceEEEEcC-CCcE
Q 011014 25 STPPAKIVAG---IVSNVVSALVKWLWSLKDSPKTA--VSSSSMIKF--EGGYTVETVFEGSKFGMEPFSVAVSP-SGEL 96 (495)
Q Consensus 25 ~~~P~~iv~~---~~~~ia~a~~~~I~~~d~~t~~~--vaG~~i~~~--~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~L 96 (495)
...|..++.. ...-+++..++.|+.++..+... ++|.+.... .+|.. .....++.|.+|++++ +|.|
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~-----~~~~~ln~P~gVa~dp~~g~L 697 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKK-----GTSQVLNSPWDVCFEPVNEKV 697 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChh-----hhHhhcCCCeEEEEecCCCeE
Confidence 3446665543 22345666778888888766542 333322111 11100 0012357899999999 7899
Q ss_pred EEEECCCCeeEEEEcCCC-------CccccccCC-CcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCC-C-cEEE
Q 011014 97 LVLDSENNSRPKLVAGSP-------EGYYGHVDG-RPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-VTTI 165 (495)
Q Consensus 97 yVaDs~n~~ii~ivaGs~-------~g~~G~~dG-~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~-G-V~ti 165 (495)
||+|..++.+..+-..+. .|.....++ ......|..|.||+++++|+ |||||+.|++|++||.+ | +.++
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 999999985443322111 011111111 12235789999999999987 99999999999999954 3 5555
Q ss_pred ecCccc-----CCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCC--------------
Q 011014 166 AGGKWS-----RGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD-------------- 226 (495)
Q Consensus 166 aGg~~G-----~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~-------------- 226 (495)
+|+... ...|..+|....+.|..|.+|+ ++.+|+|||+|.+|++|++|++++..+.+..+
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 553211 1123345666667899999999 68999999999999999999998877654211
Q ss_pred -CCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 227 -DTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 227 -~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
...|.||+++. .+.+||+|..|++|+.+...+..
T Consensus 857 ~l~~P~GIavd~--dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 857 QLSEPAGLALGE--NGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ccCCceEEEEeC--CCCEEEEECCCCEEEEEECCCCc
Confidence 12599999997 55799999999999877665543
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.74 E-value=1.3e-16 Score=186.39 Aligned_cols=254 Identities=22% Similarity=0.216 Sum_probs=162.3
Q ss_pred eeeeeccceEEEEeCCCCce--ecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCC
Q 011014 38 NVVSALVKWLWSLKDSPKTA--VSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSP 114 (495)
Q Consensus 38 ~ia~a~~~~I~~~d~~t~~~--vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~ 114 (495)
-+++...++||.++..+... .+|.+.....+|. ......+..|.||+++++|. |||+|+.++++..+-..+.
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~-----~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS-----SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEecCCccccCCCC-----ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 35566778888888766542 2222111111110 01112346899999999886 9999999995544321111
Q ss_pred ---------------CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCC
Q 011014 115 ---------------EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHV 177 (495)
Q Consensus 115 ---------------~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~ 177 (495)
...+|..+|....+.|.+|.||++|++|+|||||++|++|++||.++ +.+++|.. . .|+.
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G--~-~G~~ 849 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG--K-AGFK 849 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC--C-cCCC
Confidence 01223334444556899999999999999999999999999999755 77777632 1 4566
Q ss_pred CCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee---eC--CCCCCcceEE-------EEecCcCeEEE
Q 011014 178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS---DN--YDDTFHLGIF-------VLVAAAFFGYM 245 (495)
Q Consensus 178 dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~---~~--~~~g~P~GIA-------vd~~a~~~~yv 245 (495)
+|....++|+.|.+|+ ++.+|+|||+|.+|++|++|++++.... +. .+...|.-+. ....+.-.+.-
T Consensus 850 dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1057)
T PLN02919 850 DGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSSADTQVIK 928 (1057)
T ss_pred CCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhcccccCceee
Confidence 7777889999999999 6889999999999999999999886541 11 1111222111 11101111222
Q ss_pred EEccCCceEEEeeCCCCCcccccCCCCCCCCCCCCCCCC-CCCCccCCCCCCCCccCccchhhhh
Q 011014 246 LALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RPPLVPTEDDFEKPEEGFFGSIGRL 309 (495)
Q Consensus 246 ~d~~~~Rv~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (495)
++-...+-+.+.+....+. ..+|+.++|.+|.++.. .+.++ .++..|++.+=|+-
T Consensus 929 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 984 (1057)
T PLN02919 929 VDGVTSLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPENAVD------IDPDEGTLSPDGRA 984 (1057)
T ss_pred cCCcccccceEEEEEECCC---CCccCcCCCceeEEEeccCCceE------ecCCCceECCCCeE
Confidence 2223344446777777665 89999999999998754 23333 34455666554543
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.41 E-value=6.4e-12 Score=142.41 Aligned_cols=180 Identities=26% Similarity=0.297 Sum_probs=124.5
Q ss_pred cCCceEEEeecCCCCCCCceEEEEcC-CCcEEEEECCCCeeEE--------------EEcCCCC------ccccccCCCc
Q 011014 67 EGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENNSRPK--------------LVAGSPE------GYYGHVDGRP 125 (495)
Q Consensus 67 ~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~LyVaDs~n~~ii~--------------ivaGs~~------g~~G~~dG~~ 125 (495)
.+|...+...-+.....+-+.||++| +|.|||+|...+.+.+ +++|++. ..+|+ ++.+
T Consensus 391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA 469 (1899)
T KOG4659|consen 391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA 469 (1899)
T ss_pred CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence 34443333332323334678999999 9999999998885554 3566542 23554 4567
Q ss_pred CccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-cEEEecCcccCC--CCCCCC-CCcCcccCCCceEEEECCCCeE
Q 011014 126 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRG--VGHVDG-PSEDAKFSNDFDVVYVGSSCSL 201 (495)
Q Consensus 126 ~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~--~g~~dG-~~~~a~f~~P~gVa~vd~~G~L 201 (495)
.+|+|..|.|||+|.+|+||+||. .+||++|.+| |+|+.|...-.. -.|..+ ...+.++.+|+++++.+-++.|
T Consensus 470 ~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl 547 (1899)
T KOG4659|consen 470 QDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL 547 (1899)
T ss_pred ccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence 789999999999999999999995 7899999999 788866432111 111111 2455689999999976669999
Q ss_pred EEEECCCCeEEEEECCCCc---------eeeCCCCC------------CcceEEEEecCcCeEEEEEccCCce
Q 011014 202 LVIDRGNQAIREIQLHDDD---------CSDNYDDT------------FHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 202 yVaD~gN~rI~~~d~~g~~---------~~~~~~~g------------~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
||.| ||.|.+|+.++.. |...+... .+..||+-. .+.+||++...+|+
T Consensus 548 ~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~--~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 548 LVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT--DGALYVAESDGRRI 616 (1899)
T ss_pred EEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC--CceEEEEeccchhh
Confidence 9999 4666666666544 43221111 277888876 77899999877654
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.35 E-value=5.3e-11 Score=116.63 Aligned_cols=153 Identities=23% Similarity=0.248 Sum_probs=105.4
Q ss_pred CceEEEEc-CCCcEEEEECCCCeeEEEEcCCCC-ccccccCCCcCccccCCcceEEEcCCCCEEEEECCC--------CE
Q 011014 84 EPFSVAVS-PSGELLVLDSENNSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN--------MA 153 (495)
Q Consensus 84 ~P~GIAVd-~dG~LyVaDs~n~~ii~ivaGs~~-g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N--------~r 153 (495)
.|.|++++ ++|.|||++.....++ -..+.. ...- ........+..|.++++|++|+|||+|... .+
T Consensus 41 ~~~G~~~~~~~g~l~v~~~~~~~~~--d~~~g~~~~~~--~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 41 GPNGMAFDRPDGRLYVADSGGIAVV--DPDTGKVTVLA--DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp SEEEEEEECTTSEEEEEETTCEEEE--ETTTTEEEEEE--EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CCceEEEEccCCEEEEEEcCceEEE--ecCCCcEEEEe--eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 39999999 7999999997655222 111110 0000 000012367899999999999999999875 56
Q ss_pred EEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc--ee-------e
Q 011014 154 IRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD--CS-------D 223 (495)
Q Consensus 154 Irk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~--~~-------~ 223 (495)
|.+++.++ +..+. ..+..|+||++..+...|||+|..+++|++|+++... .. .
T Consensus 117 v~~~~~~~~~~~~~-----------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~ 179 (246)
T PF08450_consen 117 VYRIDPDGKVTVVA-----------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF 179 (246)
T ss_dssp EEEEETTSEEEEEE-----------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-
T ss_pred eEEECCCCeEEEEe-----------------cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc
Confidence 99999887 44442 2367899999654444799999999999999996422 11 1
Q ss_pred CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014 224 NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS 259 (495)
Q Consensus 224 ~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s 259 (495)
....|.|.|+++|. .+++||++..+.+|..+-..
T Consensus 180 ~~~~g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 180 PGGPGYPDGLAVDS--DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSSSCEEEEEEEBT--TS-EEEEEETTTEEEEEETT
T ss_pred CCCCcCCCcceEcC--CCCEEEEEcCCCEEEEECCC
Confidence 33445799999997 77999999999999544433
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.34 E-value=9.9e-11 Score=114.74 Aligned_cols=146 Identities=19% Similarity=0.123 Sum_probs=101.3
Q ss_pred CCCCceEEEEcCCCcEEEEECCCC-------eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCC
Q 011014 81 FGMEPFSVAVSPSGELLVLDSENN-------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNM 152 (495)
Q Consensus 81 ~~~~P~GIAVd~dG~LyVaDs~n~-------~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~ 152 (495)
.+..|.++++|++|+|||+|.... +.+..+.... ... .....|..|.||+++++|+ |||+|+.++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--~~~-----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG--KVT-----VVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS--EEE-----EEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC--eEE-----EEecCcccccceEECCcchheeecccccc
Confidence 567899999999999999997554 1222232221 111 1123578999999999997 999999999
Q ss_pred EEEEEcCC--C--c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCC
Q 011014 153 AIRKISDT--G--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNY 225 (495)
Q Consensus 153 rIrk~d~~--G--V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~ 225 (495)
+|++|+.+ + + .+++.... ....|-|++ +|.+|+|||++..+++|++|+++|..+....
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 99999943 3 2 22211110 113588999 7999999999999999999999998776432
Q ss_pred CC-CCcceEEEEecCcCeEEEEEc
Q 011014 226 DD-TFHLGIFVLVAAAFFGYMLAL 248 (495)
Q Consensus 226 ~~-g~P~GIAvd~~a~~~~yv~d~ 248 (495)
-. ..|..+++-......||||..
T Consensus 222 ~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 222 LPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCCCEEEEEEECCCCCEEEEEeC
Confidence 22 479999995434568999863
No 6
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.23 E-value=5.6e-11 Score=134.98 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=132.8
Q ss_pred CCCCCCcceeeceeeeeeeeccceEEEEeCCCCc-eecCCceeEe-----cCCceEEEeecCCCCCCCceEEEEcC-CCc
Q 011014 23 SASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKT-AVSSSSMIKF-----EGGYTVETVFEGSKFGMEPFSVAVSP-SGE 95 (495)
Q Consensus 23 ~a~~~P~~iv~~~~~~ia~a~~~~I~~~d~~t~~-~vaG~~i~~~-----~~G~~~~~~~~G~~~~~~P~GIAVd~-dG~ 95 (495)
+....|..|..+--.++..+....|+.+|.+.-. .+.|+..... +.+..+ ..-.+..|+.+||+| ||.
T Consensus 472 A~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl-----~~~~leWPT~LaV~Pmdns 546 (1899)
T KOG4659|consen 472 AQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKL-----VDLQLEWPTSLAVDPMDNS 546 (1899)
T ss_pred ceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccch-----hheeeecccceeecCCCCe
Confidence 4466777777777777777777777777666544 2233322221 111111 112357999999999 899
Q ss_pred EEEEEC-------CCCeeEEEEcCCCCcc--cc---ccCCCcCccccCCcceEEEcCCCCEEEEECCC---CEEEEEcCC
Q 011014 96 LLVLDS-------ENNSRPKLVAGSPEGY--YG---HVDGRPRGARMNHPKGLAVDDRGNIYIADTMN---MAIRKISDT 160 (495)
Q Consensus 96 LyVaDs-------~n~~ii~ivaGs~~g~--~G---~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N---~rIrk~d~~ 160 (495)
|||.|. .+| ++++++|.+... .+ +....+..+.+-.|..|||..+|.||||++.. ||||+++.+
T Consensus 547 l~Vld~nvvlrit~~~-rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~td 625 (1899)
T KOG4659|consen 547 LLVLDTNVVLRITVVH-RVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTD 625 (1899)
T ss_pred EEEeecceEEEEccCc-cEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccC
Confidence 999996 344 556888887321 11 11122345677889999999999999999874 679999999
Q ss_pred C-cEEEecCcccCCC---------CCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014 161 G-VTTIAGGKWSRGV---------GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 217 (495)
Q Consensus 161 G-V~tiaGg~~G~~~---------g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~ 217 (495)
| +..++|+++.+.| ...+..+..++|+.|..+| +.++|.|||||.+|-||+++...
T Consensus 626 g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 626 GTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred ceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhc
Confidence 9 8999997765432 1234468889999999999 79999999999999999988754
No 7
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.80 E-value=2.5e-07 Score=96.96 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=101.7
Q ss_pred CCCCCCceEEEEcCCCcEEEEECCC-----------CeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcCCCCEEE
Q 011014 79 SKFGMEPFSVAVSPSGELLVLDSEN-----------NSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI 146 (495)
Q Consensus 79 ~~~~~~P~GIAVd~dG~LyVaDs~n-----------~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYV 146 (495)
...+..|.+|++|++|+|||++..+ ..++.++ .....|..-. -..-...+..|.||++.++| |||
T Consensus 10 ~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~--~~vfa~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 10 EPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK--SNVFAEELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce--eEEeecCCCCccceeEecCC-EEE
Confidence 3445699999999999999998632 1134333 2211111100 00112357899999999998 999
Q ss_pred EECCCCEEEEE-cCCC-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC----------
Q 011014 147 ADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN---------- 208 (495)
Q Consensus 147 AD~~N~rIrk~-d~~G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN---------- 208 (495)
++. .+|+++ +.+| ..+++.+... .+ ......+++++ ++.+|.|||++..+
T Consensus 87 ~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~-----~~----~~~~~~~~~l~-~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 87 ATP--PDILFLRDKDGDDKADGEREVLLSGFGG-----QI----NNHHHSLNSLA-WGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred eCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-----CC----CcccccccCce-ECCCCCEEEecccCCCceeccCCC
Confidence 974 578888 4433 2233321110 00 00134578888 68999999988732
Q ss_pred ---------CeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014 209 ---------QAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 209 ---------~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
..|.++++++..+.. ..+...|.|++++. .+.+|+++..+....
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~--~G~l~~tdn~~~~~~ 208 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS--WGDVFFCDNDDPPLC 208 (367)
T ss_pred ccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC--CCCEEEEccCCCcee
Confidence 579999999876543 34455699999997 567899988665543
No 8
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=6.8e-07 Score=91.88 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=105.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------CC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM-----------NM 152 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~-----------N~ 152 (495)
.+.++.++..|.|++++.+.. ++..-.|...... .-......+++|+.+.+|++|.+||.|.. ..
T Consensus 68 ~~~~~~~d~~g~Lv~~~~g~~-~~~~~~~~~~t~~---~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIACEHGVR-LLDPDTGGKITLL---AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEEccccE-EEeccCCceeEEe---ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 377888898999999887654 2222112110000 01112346789999999999999999987 23
Q ss_pred EEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCC---Cc------ee
Q 011014 153 AIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD---DD------CS 222 (495)
Q Consensus 153 rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g---~~------~~ 222 (495)
+|+++++.| +..+.. ..+..|++||+..+...+|++|+..++|.+++.+. .. ..
T Consensus 144 ~lyr~~p~g~~~~l~~----------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 144 SLYRVDPDGGVVRLLD----------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred eEEEEcCCCCEEEeec----------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence 688888766 444321 12678999995444449999999999999999872 11 11
Q ss_pred eCCCCCCcceEEEEecCcCeEEEEEccCC-ceEEEeeCCCC
Q 011014 223 DNYDDTFHLGIFVLVAAAFFGYMLALLQR-RVQAMFSSKDD 262 (495)
Q Consensus 223 ~~~~~g~P~GIAvd~~a~~~~yv~d~~~~-Rv~~~~~s~~~ 262 (495)
...+.|.|-|+++|. .+++|++...+. +| ..|+.++
T Consensus 208 ~~~~~G~PDG~~vDa--dG~lw~~a~~~g~~v--~~~~pdG 244 (307)
T COG3386 208 FDEEPGLPDGMAVDA--DGNLWVAAVWGGGRV--VRFNPDG 244 (307)
T ss_pred ccCCCCCCCceEEeC--CCCEEEecccCCceE--EEECCCC
Confidence 234678999999997 788997666664 88 5555553
No 9
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=7.3e-07 Score=94.02 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=107.4
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEEC--CCCEEEEEc
Q 011014 83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADT--MNMAIRKIS 158 (495)
Q Consensus 83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~--~N~rIrk~d 158 (495)
..|.+++++++|+ +||++...+ .+.++........+. -. .-..|.++++|++| .+||+|. +++.|.+||
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~-~v~vid~~~~~~~~~-~~-----vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSN-TVSVIDTATNTVLGS-IP-----VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCC-eEEEEcCcccceeeE-ee-----eccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 6899999999887 999998877 455554332122111 11 11289999999988 6999999 589999999
Q ss_pred CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCCCeEEEEECCCCceee------CCCCCCcc
Q 011014 159 DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD------NYDDTFHL 231 (495)
Q Consensus 159 ~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN~rI~~~d~~g~~~~~------~~~~g~P~ 231 (495)
....+.+.-...| ..|.+++ ++++|. +||+|..+++|..|+..+..+.. ......|.
T Consensus 147 ~~t~~~~~~~~vG---------------~~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 147 AATNKVTATIPVG---------------NTPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred CCCCeEEEEEecC---------------CCcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 7763333222211 1578888 677776 99999999999999999887763 22333599
Q ss_pred eEEEEecCcCeEEEEEccC--CceEEE
Q 011014 232 GIFVLVAAAFFGYMLALLQ--RRVQAM 256 (495)
Q Consensus 232 GIAvd~~a~~~~yv~d~~~--~Rv~~~ 256 (495)
+++++.. +..+|+++..+ .++.++
T Consensus 211 ~i~v~~~-g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 211 GIAVDPD-GNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred eEEECCC-CCEEEEEeccCCCceEEEE
Confidence 9999973 45789999988 466443
No 10
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.6e-06 Score=91.45 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=108.6
Q ss_pred CCCceEEEEcCCC-cEEEEECC--CCeeEEEEcCCCC--ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEE
Q 011014 82 GMEPFSVAVSPSG-ELLVLDSE--NNSRPKLVAGSPE--GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIR 155 (495)
Q Consensus 82 ~~~P~GIAVd~dG-~LyVaDs~--n~~ii~ivaGs~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIr 155 (495)
+..|.+++++++| .+||+|.. ++ .+.++..... ..... .| ..|.|+++|++|+ +||+|..+++|.
T Consensus 115 G~~P~~~~~~~~~~~vYV~n~~~~~~-~vsvid~~t~~~~~~~~-vG-------~~P~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 115 GLGPVGLAVDPDGKYVYVANAGNGNN-TVSVIDAATNKVTATIP-VG-------NTPTGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred ccCCceEEECCCCCEEEEEecccCCc-eEEEEeCCCCeEEEEEe-cC-------CCcceEEECCCCCeEEEEecCCCeEE
Confidence 3589999999977 79999995 45 5555543221 11111 11 1689999999999 999999999999
Q ss_pred EEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EEEEECCC--CeEEEEECCCCceeeC--CCCC-C
Q 011014 156 KISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGN--QAIREIQLHDDDCSDN--YDDT-F 229 (495)
Q Consensus 156 k~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-LyVaD~gN--~rI~~~d~~g~~~~~~--~~~g-~ 229 (495)
+|+.++...+.+ ..+ .....+..|.+++ ++.+|. +||++.++ ++|.+++.....+... .... .
T Consensus 186 vi~~~~~~v~~~-~~~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~ 254 (381)
T COG3391 186 VIDTSGNSVVRG-SVG---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA 254 (381)
T ss_pred EEeCCCcceecc-ccc---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC
Confidence 999887544421 110 1234578999999 566665 99999988 6999999998776532 2222 6
Q ss_pred cceEEEEecCcCeEEEEEccCCce
Q 011014 230 HLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 230 P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
|.+++++. .+.++|++....+.|
T Consensus 255 ~~~v~~~p-~g~~~yv~~~~~~~V 277 (381)
T COG3391 255 PRGVAVDP-AGKAAYVANSQGGTV 277 (381)
T ss_pred CCceeECC-CCCEEEEEecCCCeE
Confidence 88999887 456789998887777
No 11
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.64 E-value=3.5e-08 Score=65.84 Aligned_cols=28 Identities=46% Similarity=0.794 Sum_probs=26.7
Q ss_pred cCCcceEEEcCCCCEEEEECCCCEEEEE
Q 011014 130 MNHPKGLAVDDRGNIYIADTMNMAIRKI 157 (495)
Q Consensus 130 f~~P~GIAVD~dGnIYVAD~~N~rIrk~ 157 (495)
|+.|.|||+|++|+|||||++||||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999987
No 12
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1.3e-06 Score=89.94 Aligned_cols=157 Identities=17% Similarity=0.069 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCCcEEEEECCCC----------eeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCC-CEEEEECC
Q 011014 82 GMEPFSVAVSPSGELLVLDSENN----------SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIADTM 150 (495)
Q Consensus 82 ~~~P~GIAVd~dG~LyVaDs~n~----------~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dG-nIYVAD~~ 150 (495)
.++|.++.++++|.+||+|..+. +.+..+.... +.. ......+..|+|||+++|| .+||+|+.
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g-~~~-----~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG-GVV-----RLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC-CEE-----EeecCcEEecCceEECCCCCEEEEEeCC
Confidence 47999999999999999998731 1122222110 000 0111237789999999999 59999999
Q ss_pred CCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceeeCCCC-C
Q 011014 151 NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDNYDD-T 228 (495)
Q Consensus 151 N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~~~~~-g 228 (495)
.++|.+++-+-...-.++... ..... ..=..|-|++ +|.+|+||++-..+ .+|.+|+++|.......-+ .
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~----~~~~~---~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~ 255 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRG----FVDFD---EEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVK 255 (307)
T ss_pred CCeEEEEecCcccCccCCcce----EEEcc---CCCCCCCceE-EeCCCCEEEecccCCceEEEECCCCcEEEEEECCCC
Confidence 999999984410000000000 00000 0012677788 79999999655444 5999999998887664444 5
Q ss_pred CcceEEEEecCcCeEEEEEccCCc
Q 011014 229 FHLGIFVLVAAAFFGYMLALLQRR 252 (495)
Q Consensus 229 ~P~GIAvd~~a~~~~yv~d~~~~R 252 (495)
.|..+++-......+||+....+.
T Consensus 256 ~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred CCccceEeCCCcCEEEEEecCCCC
Confidence 677888775445688888876644
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.40 E-value=1.7e-05 Score=82.20 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=103.9
Q ss_pred CCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014 82 GMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD 159 (495)
Q Consensus 82 ~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~ 159 (495)
..+|+.+.++|+|+ |||+|.+.+++..+-.....+.... ........-..|..|+++++|+ +||+.-.++.|.+|+-
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 46899999999976 9999999984443322221111100 0000111235799999999986 9999999999999883
Q ss_pred ---CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC--cee---e-CCCCCC
Q 011014 160 ---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DCS---D-NYDDTF 229 (495)
Q Consensus 160 ---~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~--~~~---~-~~~~g~ 229 (495)
+| ++.+..-... +. + ...-+.|.+|++..+...|||++++.+.|..|+++.. .+. . ..+...
T Consensus 222 ~~~~g~~~~~~~~~~~--~~---~---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTL--PE---G---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp ETTTTEEEEEEEEESC--ET---T---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred cccCCceeEEEEeeec--cc---c---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 44 2222110000 00 0 0111478999954444579999999999999998542 222 1 233446
Q ss_pred cceEEEEecCcCeEEEEEccCCceEEEee
Q 011014 230 HLGIFVLVAAAFFGYMLALLQRRVQAMFS 258 (495)
Q Consensus 230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~ 258 (495)
|++++++. .+..+||++...++|..+-.
T Consensus 294 Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 294 PRHFAFSP-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEE-T-TSSEEEEEETTTTEEEEEEE
T ss_pred ccEEEEeC-CCCEEEEEecCCCeEEEEEE
Confidence 99999976 46789999999999954433
No 14
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.38 E-value=3.1e-06 Score=88.17 Aligned_cols=142 Identities=12% Similarity=0.121 Sum_probs=97.4
Q ss_pred CCceEEEEcCCC-cEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECC-----------
Q 011014 83 MEPFSVAVSPSG-ELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM----------- 150 (495)
Q Consensus 83 ~~P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~----------- 150 (495)
-+|.||+++..| +|||||..-. ...+ .... +..-..........+....++.||++|.||++|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V-~p~g-~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKV-GPEG-GLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEE-CCCC-CcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence 489999999866 9999998765 4333 2111 11000011122245677789999999999999984
Q ss_pred ------CCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014 151 ------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 222 (495)
Q Consensus 151 ------N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~ 222 (495)
++|+.++|+.. ++++ ...|..|+||++..+...+.||++...||+++-..|....
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VL-----------------ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g 254 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVL-----------------LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG 254 (376)
T ss_pred eecCCCccceEEecCcccchhhh-----------------hhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccC
Confidence 34555555433 1222 2357889999965666678999999999999999998774
Q ss_pred e-----CCCCCCcceEEEEecCcCeEEEE
Q 011014 223 D-----NYDDTFHLGIFVLVAAAFFGYML 246 (495)
Q Consensus 223 ~-----~~~~g~P~GIAvd~~a~~~~yv~ 246 (495)
+ .+-.|+|..|-.+. .+..+|+
T Consensus 255 t~EvFa~~LPG~PDNIR~~~--~G~fWVa 281 (376)
T KOG1520|consen 255 TSEVFAEGLPGYPDNIRRDS--TGHFWVA 281 (376)
T ss_pred chhhHhhcCCCCCcceeECC--CCCEEEE
Confidence 3 45789999999995 4443443
No 15
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.35 E-value=1.7e-05 Score=79.67 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=105.7
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeeEEEE-------------------------cCCC-------CccccccCCCc----
Q 011014 82 GMEPFSVAVSPSGELLVLDSENNSRPKLV-------------------------AGSP-------EGYYGHVDGRP---- 125 (495)
Q Consensus 82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~iv-------------------------aGs~-------~g~~G~~dG~~---- 125 (495)
+.+|++|.+++||..||+|..+. |.++- ++.+ .|..|..|-.-
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~a-I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGLA-IGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCCceEEECCCCCeeEecCcce-eEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 57899999999999999999873 44331 1100 01112111000
Q ss_pred --CccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEE
Q 011014 126 --RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL 202 (495)
Q Consensus 126 --~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~Ly 202 (495)
..-+=..|.||++.++|.+|++....+.|-++|+ .|...+.-.. ++.-..-..|- .|+-|.++
T Consensus 182 vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P-------------~~~~~gsRriw-sdpig~~w 247 (353)
T COG4257 182 VFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQP-------------NALKAGSRRIW-SDPIGRAW 247 (353)
T ss_pred eeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCC-------------Ccccccccccc-cCccCcEE
Confidence 0112246889999999999999999999999994 4422111111 01111223344 78999999
Q ss_pred EEECCCCeEEEEECCCCceeeC--CCC-CCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 203 VIDRGNQAIREIQLHDDDCSDN--YDD-TFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 203 VaD~gN~rI~~~d~~g~~~~~~--~~~-g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
+++.++.++.+|++....-..- .++ -.|..+-||. .+.++..+...+-+. -|+.+.
T Consensus 248 ittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~--~grVW~sea~agai~--rfdpet 306 (353)
T COG4257 248 ITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR--HGRVWLSEADAGAIG--RFDPET 306 (353)
T ss_pred EeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc--CCcEEeeccccCcee--ecCccc
Confidence 9999999999999988764432 222 2588888886 788899888888773 444443
No 16
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.35 E-value=1e-05 Score=81.12 Aligned_cols=147 Identities=21% Similarity=0.193 Sum_probs=102.5
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCC--CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014 82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSP--EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD 159 (495)
Q Consensus 82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~ 159 (495)
+..|..|+.++||.+|+++...+.+-++-..++ +.+.- | .=.+|+||.+++||..||+|+++ .|.+++.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL---g-----~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL---G-----SGASPHGIVVGPDGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEec---C-----CCCCCceEEECCCCCeeEecCcc-eeEEecC
Confidence 357999999999999999998885555432222 11110 1 12589999999999999999988 9999996
Q ss_pred -CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEE
Q 011014 160 -TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFV 235 (495)
Q Consensus 160 -~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAv 235 (495)
++ ++++.-- +....+.|+.+ +.|..|+|+++.. ++---++|+....+.. ....+-|.||++
T Consensus 132 kt~evt~f~lp----------~~~a~~nlet~----vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 132 KTLEVTRFPLP----------LEHADANLETA----VFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred cccceEEeecc----------cccCCCcccce----eeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEE
Confidence 44 6665211 11123344442 4799999999986 3333477777777654 334446999999
Q ss_pred EecCcCeEEEEEccCCceE
Q 011014 236 LVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 236 d~~a~~~~yv~d~~~~Rv~ 254 (495)
.. .+.+|.+.+..+-+.
T Consensus 197 tp--dGsvwyaslagnaia 213 (353)
T COG4257 197 TP--DGSVWYASLAGNAIA 213 (353)
T ss_pred CC--CCcEEEEeccccceE
Confidence 97 677899988777663
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.33 E-value=2.5e-05 Score=81.87 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=96.2
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCC-------Cccc--cccCCC---cCccccCCcceEEEcCCCCEEEEECC
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSP-------EGYY--GHVDGR---PRGARMNHPKGLAVDDRGNIYIADTM 150 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~-------~g~~--G~~dG~---~~~a~f~~P~GIAVD~dGnIYVAD~~ 150 (495)
..+.++++++||.|||++..+........+.. .+.. -..++. .....+.+|.||++|++|+||++|..
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 34889999999999999875321000000000 0000 000111 11345889999999999999999987
Q ss_pred CCEEEEEcCC------CcEEEecCc-ccCCCC---CC-------------CCCCcCcccCCCceEEEEC-------CCCe
Q 011014 151 NMAIRKISDT------GVTTIAGGK-WSRGVG---HV-------------DGPSEDAKFSNDFDVVYVG-------SSCS 200 (495)
Q Consensus 151 N~rIrk~d~~------GV~tiaGg~-~G~~~g---~~-------------dG~~~~a~f~~P~gVa~vd-------~~G~ 200 (495)
++....++.- |--.+.+.. .....+ .. .-......+..|.|+++.. =.|.
T Consensus 204 ~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~ 283 (367)
T TIGR02604 204 DPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGL 283 (367)
T ss_pred CCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCC
Confidence 6655555421 100000000 000000 00 0001112345789998763 2579
Q ss_pred EEEEECCCCeEEEEECC--CCceee--------CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014 201 LLVIDRGNQAIREIQLH--DDDCSD--------NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 201 LyVaD~gN~rI~~~d~~--g~~~~~--------~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
++|+|...++|..+.++ +..... ...-+.|.+|++.. .+.|||+|+.+..++
T Consensus 284 ~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~p--DG~Lyv~d~~~~~i~ 345 (367)
T TIGR02604 284 LLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGP--DGALYVSDWYDRGIE 345 (367)
T ss_pred EEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECC--CCCEEEEEeccCccc
Confidence 99999999999999876 321211 11114688888776 678999998776664
No 18
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.25 E-value=8.9e-06 Score=90.55 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=113.9
Q ss_pred CCCceEEEEcC-CCcEEEEECCCCeeEE-EEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC--CCEEEE
Q 011014 82 GMEPFSVAVSP-SGELLVLDSENNSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM--NMAIRK 156 (495)
Q Consensus 82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~-ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~--N~rIrk 156 (495)
+..|.|||||. .-|||-+|+.+.+|-. .++|+.. +.- -...|-+|.+|++|. .|+||-+|+. |-.|-.
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~r-kvL------f~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIet 1139 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSER-KVL------FYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIET 1139 (1289)
T ss_pred CCCccceeeeeccceeeeeccccchhheeecCCcee-eEE------EeecccCcceEEeecccCceeeccccccCCccee
Confidence 46899999997 5679999999884422 2344431 111 123578999999999 8899999985 667888
Q ss_pred EcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceE
Q 011014 157 ISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGI 233 (495)
Q Consensus 157 ~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GI 233 (495)
.+.+| -..+. ..-+..|+|+.++.-+..|--+|.+|+|+-.+.++|..-.+ +...-.|.+|
T Consensus 1140 s~mDG~NrRili----------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~i 1203 (1289)
T KOG1214|consen 1140 SSMDGENRRILI----------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSI 1203 (1289)
T ss_pred eccCCccceEEe----------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceee
Confidence 88777 22221 12345799999766677888899999999999999865443 4555679999
Q ss_pred EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
.-+. ...|.+|+.-+||.++.--...
T Consensus 1204 tsy~---~~fY~TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1204 TSYA---DHFYHTDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred eecc---ccceeeccccCceEEeeccccc
Confidence 8884 5689999999999766554444
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.17 E-value=0.00025 Score=73.56 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=101.1
Q ss_pred CCCCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCcccccc--------CCCc-CccccCCcceEEEcCCCC-EEEEEC
Q 011014 81 FGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHV--------DGRP-RGARMNHPKGLAVDDRGN-IYIADT 149 (495)
Q Consensus 81 ~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~--------dG~~-~~a~f~~P~GIAVD~dGn-IYVAD~ 149 (495)
.+..|+.|+++++|. |||+.+.... +.++.-...|..+.. .|+. ....-.+|+.+.++++|+ |||+|.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~-v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGS-VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCe-EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 457899999999876 8999987773 333321110111110 0111 123457899999999987 999999
Q ss_pred CCCEEEEEcCC--C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC--CCcee-
Q 011014 150 MNMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH--DDDCS- 222 (495)
Q Consensus 150 ~N~rIrk~d~~--G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~--g~~~~- 222 (495)
++.+|++|+-+ + +........ ..-..|..+++..+...+||++..++.|.+|+.+ .....
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~-------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKV-------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEEC-------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCEEEEEEEeCCCceEEEeecccc-------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence 99999999832 2 222111000 1124689999555456799999999999999988 22221
Q ss_pred -----eC--CCCC--CcceEEEEecCcCeEEEEEccCCceE
Q 011014 223 -----DN--YDDT--FHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 223 -----~~--~~~g--~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
+. ...+ .|.+|++.. .+.++||+....+.|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEE
T ss_pred EEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEE
Confidence 11 1122 588999985 3678999999999983
No 20
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.14 E-value=0.00064 Score=69.34 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccC-CCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcC
Q 011014 83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVD-GRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISD 159 (495)
Q Consensus 83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~d-G~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~ 159 (495)
..|++++++++|+ |||++...+ .+.++.-...+...... .......-..|.+++++++|. +||++...+.|.+++-
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~-~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKED-RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCC-EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 4689999999875 889998777 44444311111110000 000000124699999999987 8999998999988883
Q ss_pred ---CC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC--ce---eeCCCCCCc
Q 011014 160 ---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DC---SDNYDDTFH 230 (495)
Q Consensus 160 ---~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~--~~---~~~~~~g~P 230 (495)
.| +..+ ..- ...+....+ -..|.+|++.++...|||++++.+.|..|+.+.+ .. ........|
T Consensus 205 ~~~~~~~~~~-~~~-~~~p~~~~~------~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p 276 (330)
T PRK11028 205 KDPHGEIECV-QTL-DMMPADFSD------TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP 276 (330)
T ss_pred eCCCCCEEEE-EEE-ecCCCcCCC------CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC
Confidence 23 2222 100 000000001 1246677743444469999999999999887432 22 112222368
Q ss_pred ceEEEEecCcCeEEEEEccCCceE
Q 011014 231 LGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 231 ~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
.+++++. .+.++|++....+.|.
T Consensus 277 ~~~~~~~-dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 277 RGFNIDH-SGKYLIAAGQKSHHIS 299 (330)
T ss_pred CceEECC-CCCEEEEEEccCCcEE
Confidence 9999886 4668999998888883
No 21
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.13 E-value=3.4e-06 Score=56.21 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=25.8
Q ss_pred cCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014 186 FSNDFDVVYVGSSCSLLVIDRGNQAIREI 214 (495)
Q Consensus 186 f~~P~gVa~vd~~G~LyVaD~gN~rI~~~ 214 (495)
|+.|.||+ ++++|+|||+|++|+||++|
T Consensus 1 f~~P~gva-v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVA-VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEE-EETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEE-EeCCCCEEEEECCCCEEEEC
Confidence 67899999 57999999999999999986
No 22
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.08 E-value=0.0003 Score=73.60 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=89.6
Q ss_pred CCcceEEEcCCC-CEEEEECCCCEEEEEcCCC-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014 131 NHPKGLAVDDRG-NIYIADTMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG 207 (495)
Q Consensus 131 ~~P~GIAVD~dG-nIYVAD~~N~rIrk~d~~G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g 207 (495)
-+|.||+++..| +|||||.+ --+.+++..| + ..++.... ...|..-+++. ++++|.||++|..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~------------G~~~kf~N~ld-I~~~g~vyFTDSS 180 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAE------------GKPFKFLNDLD-IDPEGVVYFTDSS 180 (376)
T ss_pred CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceecccccc------------CeeeeecCcee-EcCCCeEEEeccc
Confidence 489999999977 89999974 5688899776 3 33332211 13455667777 4669999999953
Q ss_pred -----------------CCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014 208 -----------------NQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR 264 (495)
Q Consensus 208 -----------------N~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~ 264 (495)
++|+.++|+.++.... ..+..||.|+|+... +.++.+++...+|+.+.|-+.....
T Consensus 181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d-~sfvl~~Et~~~ri~rywi~g~k~g 254 (376)
T KOG1520|consen 181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPD-GSFVLVAETTTARIKRYWIKGPKAG 254 (376)
T ss_pred cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCC-CCEEEEEeeccceeeeeEecCCccC
Confidence 4677777777766643 567779999999974 5678999999999999999988754
No 23
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.06 E-value=4.1e-05 Score=85.45 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=116.3
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeeEEE-EcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcC
Q 011014 83 MEPFSVAVSP-SGELLVLDSENNSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISD 159 (495)
Q Consensus 83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~i-vaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~ 159 (495)
.-|.||++|- +--||-+|-..+.|.+- +.|. ......+..|..|.|||||. ..|||-+|+.+.+|-+-.-
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~-------Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L 1097 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGA-------EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALL 1097 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCC-------CCceeecccCCCccceeeeeccceeeeeccccchhheeec
Confidence 3477888885 55688899777644322 1121 11112345788999999998 4579999999999998888
Q ss_pred CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC--CCCeEEEEECCCCce--eeCCCCCCcceE
Q 011014 160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDDC--SDNYDDTFHLGI 233 (495)
Q Consensus 160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~--gN~rI~~~d~~g~~~--~~~~~~g~P~GI 233 (495)
+| .+.+. ..-|-+|.+|+++.-.|+||-+|+ .|-.|-..+++|+.- ..+...|+|.|+
T Consensus 1098 dG~~rkvLf----------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1098 DGSERKVLF----------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGL 1161 (1289)
T ss_pred CCceeeEEE----------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCc
Confidence 88 22221 123679999997677999999997 577899999999764 347788999999
Q ss_pred EEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014 234 FVLVAAAFFGYMLALLQRRVQAMFSSKDDPR 264 (495)
Q Consensus 234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~ 264 (495)
.+|.- ...+-++|..++|+.-+..+...-|
T Consensus 1162 tfdpf-s~~LCWvDAGt~rleC~~p~g~gRR 1191 (1289)
T KOG1214|consen 1162 TFDPF-SKLLCWVDAGTKRLECTLPDGTGRR 1191 (1289)
T ss_pred eeCcc-cceeeEEecCCcceeEecCCCCcch
Confidence 99973 3467889999999977777766544
No 24
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.03 E-value=0.00031 Score=71.72 Aligned_cols=157 Identities=13% Similarity=0.064 Sum_probs=98.4
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEc--
Q 011014 83 MEPFSVAVSPSGE-LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS-- 158 (495)
Q Consensus 83 ~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d-- 158 (495)
..|..|+++++|+ |||+......+ .++.-...+...... . ......|.+|+++++|+ ||++....++|.+|+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i-~~~~~~~~g~l~~~~-~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRV-LSYRIADDGALTFAA-E--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcE-EEEEECCCCceEEee-e--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 3688999999987 78887655533 332111111111000 0 01123699999999987 999988888888886
Q ss_pred CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCC-cee-------eCCCCCC
Q 011014 159 DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DCS-------DNYDDTF 229 (495)
Q Consensus 159 ~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~-~~~-------~~~~~g~ 229 (495)
.+| +....... .....|+++++..+...|||++.+.++|.+++++.. .+. .......
T Consensus 111 ~~g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 111 KDGIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred CCCCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence 345 21111100 012468888843344578999999999999998752 221 1112234
Q ss_pred cceEEEEecCcCeEEEEEccCCceEEEee
Q 011014 230 HLGIFVLVAAAFFGYMLALLQRRVQAMFS 258 (495)
Q Consensus 230 P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~ 258 (495)
|.++++.. .+.++|+++...+.|...-.
T Consensus 177 p~~~~~~p-dg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 177 PRHMVFHP-NQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred CceEEECC-CCCEEEEEecCCCEEEEEEE
Confidence 89999985 45689999998899844443
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.79 E-value=9.1e-05 Score=62.89 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=50.4
Q ss_pred eEEEcCC-CCEEEEEC-----------------CCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEE
Q 011014 135 GLAVDDR-GNIYIADT-----------------MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY 194 (495)
Q Consensus 135 GIAVD~d-GnIYVAD~-----------------~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~ 194 (495)
+|+|+.+ |.||++|+ .++|+.++|+.. +++++. .|..|+||++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVal 64 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVAL 64 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEEE
Confidence 7899998 99999998 267999999766 555543 3678999996
Q ss_pred ECCCCeEEEEECCCCeEEEEECCC
Q 011014 195 VGSSCSLLVIDRGNQAIREIQLHD 218 (495)
Q Consensus 195 vd~~G~LyVaD~gN~rI~~~d~~g 218 (495)
..+...|+|+++..+||.++-+.|
T Consensus 65 s~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 65 SPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred cCCCCEEEEEeccCceEEEEEEeC
Confidence 444556999999999999998876
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.60 E-value=0.00088 Score=69.51 Aligned_cols=156 Identities=17% Similarity=0.088 Sum_probs=90.2
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCC----CCEEEEECCC-----
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIYIADTMN----- 151 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~d----GnIYVAD~~N----- 151 (495)
..|++|++.+||.|||++. .. .+.++. |.......... ...........|||++++ +.|||+-+..
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G-~i~~~~~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SG-RIWVVDKDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TT-EEEEEETTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEeCCCcEEEEeC-Cc-eEEEEeCCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 4799999999999999998 44 455544 22101111111 111223456789999994 8899987732
Q ss_pred ---CEEEEEcC-CC------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC-------------CC
Q 011014 152 ---MAIRKISD-TG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-------------GN 208 (495)
Q Consensus 152 ---~rIrk~d~-~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~-------------gN 208 (495)
++|.++.. ++ ..++.-+... .......-..|+ ++++|.|||+-- ..
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~~~~~~~~~~~~ 147 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGNDDNAQDPNSLR 147 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTGGGGCSTTSST
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCCccccccccccc
Confidence 56777662 22 1222211110 011233445576 789999999842 24
Q ss_pred CeEEEEECCCCcee--------------eCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 209 QAIREIQLHDDDCS--------------DNYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 209 ~rI~~~d~~g~~~~--------------~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
..|.+|+++|.... +..+.-.|.+++++.. .+.+|+++......
T Consensus 148 G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~-tg~l~~~d~G~~~~ 205 (331)
T PF07995_consen 148 GKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN-TGRLWAADNGPDGW 205 (331)
T ss_dssp TEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT-TTEEEEEEE-SSSS
T ss_pred ceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECC-CCcEEEEccCCCCC
Confidence 68999999986321 1223334999999984 27899999776655
No 27
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.54 E-value=0.007 Score=65.61 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=95.2
Q ss_pred CCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcc-ccccCCCcCccccCCcceEEEcCCC----
Q 011014 68 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGY-YGHVDGRPRGARMNHPKGLAVDDRG---- 142 (495)
Q Consensus 68 ~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~-~G~~dG~~~~a~f~~P~GIAVD~dG---- 142 (495)
.++.++....| +..|++|++.+||+|||++....++..+..+..... ...............+.|||++++-
T Consensus 18 ~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 18 ENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccC
Confidence 34444444443 458999999999999999985443444433222111 1111111111235678899998653
Q ss_pred ---CEEEEEC---------CCCEEEEEcCC--C-----cEEEe-cCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEE
Q 011014 143 ---NIYIADT---------MNMAIRKISDT--G-----VTTIA-GGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL 202 (495)
Q Consensus 143 ---nIYVAD~---------~N~rIrk~d~~--G-----V~tia-Gg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~Ly 202 (495)
.|||+=+ ...+|.++.-+ + ..++. +...+ ....-..|+ ++++|.||
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-------------~~H~GgrI~-FgPDG~LY 160 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-------------NDHNGGRLV-FGPDGKIY 160 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-------------CCcCCceEE-ECCCCcEE
Confidence 5999832 24678877622 1 22232 21110 112333455 68888999
Q ss_pred EEECC--------------------------------CCeEEEEECCCCce------------eeCCCCCCcceEEEEec
Q 011014 203 VIDRG--------------------------------NQAIREIQLHDDDC------------SDNYDDTFHLGIFVLVA 238 (495)
Q Consensus 203 VaD~g--------------------------------N~rI~~~d~~g~~~------------~~~~~~g~P~GIAvd~~ 238 (495)
|+--. ...|.+|+++|... .+..+.-.|.|++++.
T Consensus 161 Vs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp- 239 (454)
T TIGR03606 161 YTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP- 239 (454)
T ss_pred EEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-
Confidence 86322 22688999888531 1233334589999997
Q ss_pred CcCeEEEEEccCCc
Q 011014 239 AAFFGYMLALLQRR 252 (495)
Q Consensus 239 a~~~~yv~d~~~~R 252 (495)
.+.+|+++.....
T Consensus 240 -~G~Lw~~e~Gp~~ 252 (454)
T TIGR03606 240 -DGTLYASEQGPNS 252 (454)
T ss_pred -CCCEEEEecCCCC
Confidence 5678888877653
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.36 E-value=0.0046 Score=64.16 Aligned_cols=169 Identities=19% Similarity=0.198 Sum_probs=89.4
Q ss_pred CCceEEEEcCCCcEEEEECCCC-------------eeEEEEc-CCCCc---cccc--cCCCcCccccCCcceEEEcCC-C
Q 011014 83 MEPFSVAVSPSGELLVLDSENN-------------SRPKLVA-GSPEG---YYGH--VDGRPRGARMNHPKGLAVDDR-G 142 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~-------------~ii~iva-Gs~~g---~~G~--~dG~~~~a~f~~P~GIAVD~d-G 142 (495)
-.-.+|++++||.|||+-.... .++++-. |+... ..+. .+...-+..|.+|.++++|+. |
T Consensus 114 H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg 193 (331)
T PF07995_consen 114 HNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG 193 (331)
T ss_dssp S-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred CCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence 3457799999999999854322 3444432 22100 0000 011112346899999999998 9
Q ss_pred CEEEEECCCC---EEEEEcCCCcE---EEecCcc--cCCCC-CCCC-CCcCcc--c---CCCceEEEECC------CCeE
Q 011014 143 NIYIADTMNM---AIRKISDTGVT---TIAGGKW--SRGVG-HVDG-PSEDAK--F---SNDFDVVYVGS------SCSL 201 (495)
Q Consensus 143 nIYVAD~~N~---rIrk~d~~GV~---tiaGg~~--G~~~g-~~dG-~~~~a~--f---~~P~gVa~vd~------~G~L 201 (495)
+||++|.+.. .|.++.+.+-. ...++.. +.... .... ...... + ..|.++++... .|.+
T Consensus 194 ~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~ 273 (331)
T PF07995_consen 194 RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDL 273 (331)
T ss_dssp EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEE
T ss_pred cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcE
Confidence 9999997643 45555432200 0000000 00000 0000 000011 1 46778876533 6789
Q ss_pred EEEECCCCeEEEEECCCCc-ee----eCCCCC-CcceEEEEecCcCeEEEEEccCCce
Q 011014 202 LVIDRGNQAIREIQLHDDD-CS----DNYDDT-FHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 202 yVaD~gN~rI~~~d~~g~~-~~----~~~~~g-~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
+|+|.+..+|..+.++... +. .....+ .|.+|+++. .+.|||++..+.+|
T Consensus 274 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p--DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 274 FVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP--DGALYVSDDSDGKI 329 (331)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET--TSEEEEEE-TTTTE
T ss_pred EEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC--CCeEEEEECCCCeE
Confidence 9999999999999987432 22 134444 689999997 68999999877766
No 29
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.33 E-value=0.031 Score=56.04 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=80.5
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccc--c----ccCCCcCccccCCcceEEEcCC-CCEEEEECC-CCEE
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYY--G----HVDGRPRGARMNHPKGLAVDDR-GNIYIADTM-NMAI 154 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~--G----~~dG~~~~a~f~~P~GIAVD~d-GnIYVAD~~-N~rI 154 (495)
..|.||++-.+|.+.+++-..+....+-........ . ..-+.. ...=..-.|||.|+. +.+||+--. -.+|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 479999999888888888656634333221110000 0 000000 000012469999996 457777322 2356
Q ss_pred EEEcC--CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC----CC
Q 011014 155 RKISD--TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN----YD 226 (495)
Q Consensus 155 rk~d~--~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~----~~ 226 (495)
..++. .+ +........ ......+..|.+|++.+..|.|||....+++|.+++.+|...... +.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDL---------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF 214 (248)
T ss_dssp EEEESTT-SS--EEEE-HHH---------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG
T ss_pred EEEccccCccceeecccccc---------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc
Confidence 66653 22 222211000 012334567999998888999999999999999999999876641 11
Q ss_pred CC------CcceEEEEecCcCeEEEEEc
Q 011014 227 DT------FHLGIFVLVAAAFFGYMLAL 248 (495)
Q Consensus 227 ~g------~P~GIAvd~~a~~~~yv~d~ 248 (495)
.| -|.|||+|. .+++||+.=
T Consensus 215 ~gl~~~~~QpEGIa~d~--~G~LYIvsE 240 (248)
T PF06977_consen 215 HGLSKDIPQPEGIAFDP--DGNLYIVSE 240 (248)
T ss_dssp GG-SS---SEEEEEE-T--T--EEEEET
T ss_pred cCcccccCCccEEEECC--CCCEEEEcC
Confidence 12 289999997 679999875
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.32 E-value=0.0018 Score=64.82 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=65.0
Q ss_pred CceEEEEcCC-CcEEEEECCCCeeEEEEcC---CCCccccccCC-CcCccccCCcceEEEcC-CCCEEEEECCCCEEEEE
Q 011014 84 EPFSVAVSPS-GELLVLDSENNSRPKLVAG---SPEGYYGHVDG-RPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKI 157 (495)
Q Consensus 84 ~P~GIAVd~d-G~LyVaDs~n~~ii~ivaG---s~~g~~G~~dG-~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~ 157 (495)
.-.|||.|+. +.|||+--.+-..+.-+.+ ........... ......+..|.+|++|+ .|+|||....+++|..+
T Consensus 119 G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~ 198 (248)
T PF06977_consen 119 GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLEL 198 (248)
T ss_dssp --EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEE
Confidence 4689999985 6688886544433333333 11111010000 00223567799999998 77899999999999999
Q ss_pred cCCC--cEEE--ecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014 158 SDTG--VTTI--AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214 (495)
Q Consensus 158 d~~G--V~ti--aGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~ 214 (495)
|.+| +..+ ..+..| ....|..|-||| +|++|+|||+.--| +..+|
T Consensus 199 d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 199 DRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-----------SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred CCCCCEEEEEEeCCcccC----------cccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence 9999 3332 122111 123678999999 68999999999754 66666
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.11 E-value=0.13 Score=49.92 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=89.9
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG 161 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G 161 (495)
..|.+++++++|.++++.......+.++........... ..-..|..++++++|. ||++-...++|+.+|...
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV------LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE------EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 458899999999977765544323333332110000000 0113577899999988 556655578899999543
Q ss_pred ---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014 162 ---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL 236 (495)
Q Consensus 162 ---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd 236 (495)
+..+.....+ . ...-..|.++++ +.++ .+|++...+++|.+++.....+.. ....+.+.++++.
T Consensus 189 ~~~~~~~~~~~~~----~------~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 257 (300)
T TIGR03866 189 RKVIKKITFEIPG----V------HPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFT 257 (300)
T ss_pred ceeeeeeeecccc----c------ccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEEC
Confidence 3333211100 0 001125777884 5555 568888888899999987655432 2233467888876
Q ss_pred ecCcCeEEEEEccCCce
Q 011014 237 VAAAFFGYMLALLQRRV 253 (495)
Q Consensus 237 ~~a~~~~yv~d~~~~Rv 253 (495)
. .+..+|++....+.|
T Consensus 258 ~-~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 258 P-DEKYLLTTNGVSNDV 273 (300)
T ss_pred C-CCCEEEEEcCCCCeE
Confidence 5 344677776666666
No 32
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.09 E-value=0.0019 Score=54.87 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=42.0
Q ss_pred EEEEcCC-CcEEEEECCCC----------------e-eEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEE
Q 011014 87 SVAVSPS-GELLVLDSENN----------------S-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 147 (495)
Q Consensus 87 GIAVd~d-G~LyVaDs~n~----------------~-ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVA 147 (495)
+|+|+++ |.||++|+... + .++.-..+.. . ......|..|+|||+++|+. |+||
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~-~------~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE-T------TVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE-E------EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe-E------EEehhCCCccCeEEEcCCCCEEEEE
Confidence 7899997 99999998544 1 1111111110 0 01123588999999999998 9999
Q ss_pred ECCCCEEEEEcC
Q 011014 148 DTMNMAIRKISD 159 (495)
Q Consensus 148 D~~N~rIrk~d~ 159 (495)
++..+||.++--
T Consensus 75 Et~~~Ri~rywl 86 (89)
T PF03088_consen 75 ETGRYRILRYWL 86 (89)
T ss_dssp EGGGTEEEEEES
T ss_pred eccCceEEEEEE
Confidence 999999999853
No 33
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.07 E-value=0.086 Score=55.76 Aligned_cols=181 Identities=16% Similarity=0.145 Sum_probs=95.2
Q ss_pred eeeeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCc-EEEEECCCCeeEEEEcC-C
Q 011014 36 VSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENNSRPKLVAG-S 113 (495)
Q Consensus 36 ~~~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s 113 (495)
+..+.....+.++.+|..+...+ ..+..|.. -+.++++.+||. +||+..++ .+.++.- +
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~-----~~i~~~~~------------~h~~~~~s~Dgr~~yv~~rdg--~vsviD~~~ 67 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVV-----ARIPTGGA------------PHAGLKFSPDGRYLYVANRDG--TVSVIDLAT 67 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEE-----EEEE-STT------------EEEEEE-TT-SSEEEEEETTS--EEEEEETTS
T ss_pred EEEEEecCCCEEEEEECCCCeEE-----EEEcCCCC------------ceeEEEecCCCCEEEEEcCCC--eEEEEECCc
Confidence 34455667788888888876544 11211111 144567778776 88887543 3444432 2
Q ss_pred CCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCC
Q 011014 114 PEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSND 189 (495)
Q Consensus 114 ~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P 189 (495)
.. ...... .=..|.||++++||+ |||+....+.|.++|... +.++..+.... + ..-...
T Consensus 68 ~~-~v~~i~------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----~-----~~~~Rv 130 (369)
T PF02239_consen 68 GK-VVATIK------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----D-----GPESRV 130 (369)
T ss_dssp SS-EEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-----T-----TS---E
T ss_pred cc-EEEEEe------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc-----c-----ccCCCc
Confidence 21 111000 013688999999998 999999999999999655 55554322110 0 011233
Q ss_pred ceEEEECCCCeEEEEECCCCeEEEEECCCC-ce--eeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 190 FDVVYVGSSCSLLVIDRGNQAIREIQLHDD-DC--SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 190 ~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~-~~--~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
.+|...+.....+|+-...+.|..++.... .. .......+|.+..++. .+..++++....+.+
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i 196 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKI 196 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeeccccccee
Confidence 455533344445566677788888886553 22 1233344789998886 234556665555555
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.00 E-value=0.031 Score=54.39 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=79.5
Q ss_pred CCceEEEEcCCCcEE-EEECCCCeeEEEEcCC-CC--ccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014 83 MEPFSVAVSPSGELL-VLDSENNSRPKLVAGS-PE--GYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI 157 (495)
Q Consensus 83 ~~P~GIAVd~dG~Ly-VaDs~n~~ii~ivaGs-~~--g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~ 157 (495)
..|..++++++|..+ ++....+ .+.++.-. .. ...-. ........-..|.+++++++|+ +|++...+++|.++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVIKKITF-EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceeeeeeee-cccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 467889999998854 4433233 44554321 10 00000 0000001123578999999998 58888878899999
Q ss_pred cCCC--c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceE
Q 011014 158 SDTG--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGI 233 (495)
Q Consensus 158 d~~G--V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GI 233 (495)
|.+. + ..+.. + ..+.++++.+....||++....+.|.++++.+..+.. ......|.+|
T Consensus 235 d~~~~~~~~~~~~---~---------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 296 (300)
T TIGR03866 235 DAKTYEVLDYLLV---G---------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGV 296 (300)
T ss_pred ECCCCcEEEEEEe---C---------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccccee
Confidence 9543 2 22211 0 1366777433344567777778899999999987643 3333568998
Q ss_pred EEE
Q 011014 234 FVL 236 (495)
Q Consensus 234 Avd 236 (495)
++.
T Consensus 297 ~~~ 299 (300)
T TIGR03866 297 VVR 299 (300)
T ss_pred EeC
Confidence 863
No 35
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.11 Score=53.08 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeeEEE--EcCCC----Cc---cccccCCCcCccccCCcceEEEcC-CCCEEEEECCC
Q 011014 82 GMEPFSVAVSPSGELLVLDSENNSRPKL--VAGSP----EG---YYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMN 151 (495)
Q Consensus 82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~i--vaGs~----~g---~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N 151 (495)
...|.+|+.-.+|...|+|-.......+ -+++. .. ..|..+. .+..| .|+|.|+ ++.+|||--.|
T Consensus 128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k--~N~Gf---EGlA~d~~~~~l~~aKEr~ 202 (316)
T COG3204 128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK--KNKGF---EGLAWDPVDHRLFVAKERN 202 (316)
T ss_pred cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCC--CCcCc---eeeecCCCCceEEEEEccC
Confidence 4689999998777777777655522222 11211 00 0111111 12223 4999999 55688875332
Q ss_pred -CEEEEEc--CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee----C
Q 011014 152 -MAIRKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----N 224 (495)
Q Consensus 152 -~rIrk~d--~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~ 224 (495)
-+|.+++ ++.++.-+... ........+..-.++.+....++|+|.--..++|.+++.+|+.+.. .
T Consensus 203 P~~I~~~~~~~~~l~~~~~~~--------~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~ 274 (316)
T COG3204 203 PIGIFEVTQSPSSLSVHASLD--------PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK 274 (316)
T ss_pred CcEEEEEecCCcccccccccC--------cccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence 3455554 11121111100 0001112234445666555678899988889999999999986542 2
Q ss_pred CCCCC------cceEEEEecCcCeEEEEEcc
Q 011014 225 YDDTF------HLGIFVLVAAAFFGYMLALL 249 (495)
Q Consensus 225 ~~~g~------P~GIAvd~~a~~~~yv~d~~ 249 (495)
+..|+ +.|||+|. .+++||+.=-
T Consensus 275 g~~gL~~dipqaEGiamDd--~g~lYIvSEP 303 (316)
T COG3204 275 GNHGLSSDIPQAEGIAMDD--DGNLYIVSEP 303 (316)
T ss_pred CCCCCcccCCCcceeEECC--CCCEEEEecC
Confidence 23332 78999997 7899988643
No 36
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.23 Score=51.77 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=102.6
Q ss_pred CCCCceEEEEcCCCc-EEEEECCCCeeEEEEc----CCCC---ccccccCCCcCccc--cCCcceEEEcCCCC-EEEEEC
Q 011014 81 FGMEPFSVAVSPSGE-LLVLDSENNSRPKLVA----GSPE---GYYGHVDGRPRGAR--MNHPKGLAVDDRGN-IYIADT 149 (495)
Q Consensus 81 ~~~~P~GIAVd~dG~-LyVaDs~n~~ii~iva----Gs~~---g~~G~~dG~~~~a~--f~~P~GIAVD~dGn-IYVAD~ 149 (495)
.+..|+.|++|++|. ||+|.+... .+.+.. |... +..-+ .|.....+ =.+++..-++++|+ |+|+|-
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g-~v~v~p~~~dG~l~~~v~~~~h-~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSG-SVSVYPLQADGSLQPVVQVVKH-TGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCc-eEEEEEcccCCccccceeeeec-CCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 346679999999996 666666554 444432 3321 11112 11111112 33467888999995 999999
Q ss_pred CCCEEEEEc-CCCcEEEec---CcccCCC-------------------------CCCC--C--------CCcCccc---C
Q 011014 150 MNMAIRKIS-DTGVTTIAG---GKWSRGV-------------------------GHVD--G--------PSEDAKF---S 187 (495)
Q Consensus 150 ~N~rIrk~d-~~GV~tiaG---g~~G~~~-------------------------g~~d--G--------~~~~a~f---~ 187 (495)
+..||..|+ .+|..+.+. -+.|.++ .+.+ | ......| +
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 999999998 566322221 1111111 0111 1 1112223 3
Q ss_pred CCceEEEECCCC-eEEEEECCCCeEEEEEC--CCCceee----CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCC
Q 011014 188 NDFDVVYVGSSC-SLLVIDRGNQAIREIQL--HDDDCSD----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSK 260 (495)
Q Consensus 188 ~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~--~g~~~~~----~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~ 260 (495)
+-..|.+ ..+| .||++|++-+.|..|.. ++..+.. ..+.-+|++..++.+ +.+++++.-..+.| .+|..
T Consensus 245 ~~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i--~vf~~ 320 (346)
T COG2706 245 WAAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNI--TVFER 320 (346)
T ss_pred ceeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcE--EEEEE
Confidence 3345663 4555 68999999998886664 4444332 344446999999973 56788888777777 45554
Q ss_pred CC
Q 011014 261 DD 262 (495)
Q Consensus 261 ~~ 262 (495)
+.
T Consensus 321 d~ 322 (346)
T COG2706 321 DK 322 (346)
T ss_pred cC
Confidence 43
No 37
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.84 E-value=0.04 Score=56.25 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=43.0
Q ss_pred ceEEEECCCCeEEEEECCCCeEEEEECCCCc-------eeeCCC-CCCcceEEEEecCcCeEEEEEccCCce
Q 011014 190 FDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-------CSDNYD-DTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 190 ~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~-------~~~~~~-~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
.+++ +|++|+||+++..++.|.+.++++.. +..... .-+|.+++++....+.+|++.-.-+|+
T Consensus 189 ~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 189 DGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp CEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred ceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 4555 78999999999999999999999822 222333 568999999963357899988544443
No 38
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.77 E-value=0.35 Score=49.89 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=83.1
Q ss_pred CCCceEEEEcC---CCcEEEEECCCCeeEEEEcCCCCcc--ccccCCCcCccccCCcceEEEcCCCCEEEE---------
Q 011014 82 GMEPFSVAVSP---SGELLVLDSENNSRPKLVAGSPEGY--YGHVDGRPRGARMNHPKGLAVDDRGNIYIA--------- 147 (495)
Q Consensus 82 ~~~P~GIAVd~---dG~LyVaDs~n~~ii~ivaGs~~g~--~G~~dG~~~~a~f~~P~GIAVD~dGnIYVA--------- 147 (495)
+.--.|+|+.. ...||.+|..+. +|.++.++..-. .|....+...+. ..|.+|..- .|+|||+
T Consensus 137 gavYkGLAi~~~~~~~~LYaadF~~g-~IDVFd~~f~~~~~~g~F~DP~iPag-yAPFnIqni-g~~lyVtYA~qd~~~~ 213 (336)
T TIGR03118 137 GNVYKGLAVGPTGGGDYLYAANFRQG-RIDVFKGSFRPPPLPGSFIDPALPAG-YAPFNVQNL-GGTLYVTYAQQDADRN 213 (336)
T ss_pred cceeeeeEEeecCCCceEEEeccCCC-ceEEecCccccccCCCCccCCCCCCC-CCCcceEEE-CCeEEEEEEecCCccc
Confidence 34456788764 356999999766 788887765311 111111111222 357888665 5789996
Q ss_pred ----ECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEEC-----CCCeEEEEECCCCeEEEEEC
Q 011014 148 ----DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQAIREIQL 216 (495)
Q Consensus 148 ----D~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd-----~~G~LyVaD~gN~rI~~~d~ 216 (495)
..+..-|-+||.+| +..++. ...|+.|++|++.+ -.|.|+|...+.++|-.||+
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as---------------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVAS---------------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEecc---------------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 13456899999999 555633 23699999999532 25789999999999999998
Q ss_pred C-CCceee
Q 011014 217 H-DDDCSD 223 (495)
Q Consensus 217 ~-g~~~~~ 223 (495)
. |..+..
T Consensus 279 ~sG~~~g~ 286 (336)
T TIGR03118 279 QSGAQLGQ 286 (336)
T ss_pred CCCceeee
Confidence 6 555543
No 39
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.74 E-value=0.04 Score=54.79 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred ccCCcceEEEcCCCC-EEEEECCCCEEEEEc---CCC-c---EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe
Q 011014 129 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTG-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS 200 (495)
Q Consensus 129 ~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d---~~G-V---~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~ 200 (495)
++.-|.||+.|.+-. .|+.|+.|..|..++ +.| + ..+.-..... .-.--.|-|++ +|.+|+
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~----------~~e~~~PDGm~-ID~eG~ 224 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ----------PFESLEPDGMT-IDTEGN 224 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC----------CcCCCCCCcce-EccCCc
Confidence 455688999998654 999999999996666 444 1 2222211111 00113688898 689999
Q ss_pred EEEEECCCCeEEEEECCCCcee
Q 011014 201 LLVIDRGNQAIREIQLHDDDCS 222 (495)
Q Consensus 201 LyVaD~gN~rI~~~d~~g~~~~ 222 (495)
|||+-.+..+|+++++....+.
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKIL 246 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEE
Confidence 9999999999999999886543
No 40
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.67 E-value=0.081 Score=54.44 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=85.3
Q ss_pred CCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccc-------cccCCCcCccccCCcceEEEcCCCCEEEEECCCC
Q 011014 80 KFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYY-------GHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 152 (495)
Q Consensus 80 ~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~-------G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~ 152 (495)
..+.+|+||++.|.|-+||+|.... ...+..+.+.... ....+......-..|+||.+......-|+-....
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 3456899999999999999999887 6666666521111 1111111122335699999986544334332211
Q ss_pred --EEEEEc-CCC-cEEEecCcccC----C-CCCCCCCCcCcccCCCceEEEE--CCCCeEEEEECCCCeEEEEECCCCce
Q 011014 153 --AIRKIS-DTG-VTTIAGGKWSR----G-VGHVDGPSEDAKFSNDFDVVYV--GSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 153 --rIrk~d-~~G-V~tiaGg~~G~----~-~g~~dG~~~~a~f~~P~gVa~v--d~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
....|. .+| |+-....-.-. . .-.+++. ..... .|+|+. .....||.+|..|++|.+||..-..+
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~--~gavY--kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ--QGNVY--KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCC--Cccee--eeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 111222 333 22221100000 0 0000000 00011 244432 22568999999999999998666543
Q ss_pred ee---CCCC----C-CcceEEEEecCcCeEEEEEccC
Q 011014 222 SD---NYDD----T-FHLGIFVLVAAAFFGYMLALLQ 250 (495)
Q Consensus 222 ~~---~~~~----g-~P~GIAvd~~a~~~~yv~d~~~ 250 (495)
.. .... | -|.+|... +..+||+=-.+
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~q 208 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQQ 208 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEE---CCeEEEEEEec
Confidence 32 1112 2 28888777 56788876554
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.24 Score=51.59 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCceEEEEcCCC-cEEEEECC--CCeeEEE-EcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEE
Q 011014 83 MEPFSVAVSPSG-ELLVLDSE--NNSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI 157 (495)
Q Consensus 83 ~~P~GIAVd~dG-~LyVaDs~--n~~ii~i-vaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~ 157 (495)
.+|.-|++++++ .||+.... ..++... +++.. |..-..+- ....-..|..|++|++|. ||+|....+.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~--~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNR--QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeec--cccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 489999999987 58888755 2222221 12110 11000000 011224579999999995 88998888887776
Q ss_pred c--CCC-c----EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-----C
Q 011014 158 S--DTG-V----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-----N 224 (495)
Q Consensus 158 d--~~G-V----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-----~ 224 (495)
- .+| + .++.... .|+.....=..++..- +++++ .|+++|-+..||..|+++...+.. .
T Consensus 117 p~~~dG~l~~~v~~~~h~g--------~~p~~rQ~~~h~H~a~-~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTG--------SGPHERQESPHVHSAN-FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred EcccCCccccceeeeecCC--------CCCCccccCCccceee-eCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence 5 667 2 3332211 1122222223355555 56666 789999999999999998544431 2
Q ss_pred CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeC
Q 011014 225 YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSS 259 (495)
Q Consensus 225 ~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s 259 (495)
....-|+=|++-. .+.+.|+..=+++.|-..-.+
T Consensus 188 ~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 188 KPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEc
Confidence 2222488888886 456899999999999433333
No 42
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.05 E-value=1.9 Score=43.75 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=84.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-- 161 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-- 161 (495)
.-.||++- ++.||..-..++.....-..+. ...+...- -..-+|||.|. ..||++|. +.+|+.+|+..
T Consensus 91 FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-~~~~~~~y------~~EGWGLt~dg-~~Li~SDG-S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 91 FGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-KKIGTFPY------PGEGWGLTSDG-KRLIMSDG-SSRLYFLDPETFK 160 (264)
T ss_dssp -EEEEEEE-TTEEEEEESSSSEEEEEETTTT-EEEEEEE-------SSS--EEEECS-SCEEEE-S-SSEEEEE-TTT-S
T ss_pred cceeEEEE-CCEEEEEEecCCeEEEEccccc-eEEEEEec------CCcceEEEcCC-CEEEEECC-ccceEEECCcccc
Confidence 46788887 5688888887773333322222 11111000 01457999774 47999996 89999999765
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee------------CC---
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD------------NY--- 225 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~------------~~--- 225 (495)
+.++.-...|. ....=+.+-++ +|.||---+..++|.+||+....+.. ..
T Consensus 161 ~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~ 226 (264)
T PF05096_consen 161 EVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR 226 (264)
T ss_dssp EEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred eEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence 33332211110 11222344444 67999999999999999999988742 01
Q ss_pred --CCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014 226 --DDTFHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 226 --~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
....-.|||.|.. ...+|||.-+=.++-
T Consensus 227 ~~~~dVLNGIAyd~~-~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 227 QPDDDVLNGIAYDPE-TDRLFVTGKLWPKLY 256 (264)
T ss_dssp --TTS-EEEEEEETT-TTEEEEEETT-SEEE
T ss_pred cccCCeeEeEeEeCC-CCEEEEEeCCCCceE
Confidence 1235789999974 457899986655543
No 43
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.2 Score=51.29 Aligned_cols=123 Identities=13% Similarity=0.171 Sum_probs=78.9
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCc---CccccCCcceEEEcC-CCCEEEEECCCCEEEEE
Q 011014 83 MEPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRP---RGARMNHPKGLAVDD-RGNIYIADTMNMAIRKI 157 (495)
Q Consensus 83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~---~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~ 157 (495)
..-.|+|.|+ ++.+||+--.|-..+..+.++............ ..-.+..-.|+.+|+ +|.|+|---..+++..+
T Consensus 181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence 3457999998 566899887776555555555433332211111 112255667899997 77899988889999999
Q ss_pred cCCC--cEE--EecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECC
Q 011014 158 SDTG--VTT--IAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 217 (495)
Q Consensus 158 d~~G--V~t--iaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~ 217 (495)
|.+| +.. +.+|..| .....-.+.||+ .|++|+|||+..- +.-.+|.++
T Consensus 261 d~~G~~~~~lsL~~g~~g----------L~~dipqaEGia-mDd~g~lYIvSEP-nlfy~F~~~ 312 (316)
T COG3204 261 DLSGEVIELLSLTKGNHG----------LSSDIPQAEGIA-MDDDGNLYIVSEP-NLFYRFTPQ 312 (316)
T ss_pred ecCCCeeeeEEeccCCCC----------CcccCCCcceeE-ECCCCCEEEEecC-CcceecccC
Confidence 9888 222 2233222 123456788999 7999999998754 455566544
No 44
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.77 E-value=0.43 Score=50.33 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=56.6
Q ss_pred CcceEEEcCCCC-EEEEEC---------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCC
Q 011014 132 HPKGLAVDDRGN-IYIADT---------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS 198 (495)
Q Consensus 132 ~P~GIAVD~dGn-IYVAD~---------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~ 198 (495)
.|.|+ +.+||. ||||.+ ....|.+||... +..+.-+.. ........|..+++.++.
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~----------p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG----------PRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC----------chhhccCccceEEECCCC
Confidence 78897 888876 999999 889999999655 333321110 011224567778844444
Q ss_pred CeEEEEECC-CCeEEEEECCCCceee
Q 011014 199 CSLLVIDRG-NQAIREIQLHDDDCSD 223 (495)
Q Consensus 199 G~LyVaD~g-N~rI~~~d~~g~~~~~ 223 (495)
..|||++.. .+.|-++|+....+..
T Consensus 117 k~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 117 KTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CEEEEecCCCCCEEEEEECCCCcEEE
Confidence 479999976 9999999999876643
No 45
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.70 E-value=0.084 Score=52.60 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=57.3
Q ss_pred ccCCCceEEEECCCCeEEEEECCCCeEEEEE--CCCCceee-----------CCCCCCcceEEEEecCcCeEEEEEccCC
Q 011014 185 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ--LHDDDCSD-----------NYDDTFHLGIFVLVAAAFFGYMLALLQR 251 (495)
Q Consensus 185 ~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d--~~g~~~~~-----------~~~~g~P~GIAvd~~a~~~~yv~d~~~~ 251 (495)
++.-|++|+...+....|+.|+.|..|..++ ..+..+.. .-+.-.|.|+++|. .+++||+.+...
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGG 233 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCc
Confidence 3456788887666778999999999996555 65544421 12334699999997 889999999999
Q ss_pred ceEEEeeCCCC
Q 011014 252 RVQAMFSSKDD 262 (495)
Q Consensus 252 Rv~~~~~s~~~ 262 (495)
+|+++..+...
T Consensus 234 ~V~~~dp~tGK 244 (310)
T KOG4499|consen 234 TVQKVDPTTGK 244 (310)
T ss_pred EEEEECCCCCc
Confidence 99877766543
No 46
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.63 E-value=0.76 Score=47.73 Aligned_cols=181 Identities=13% Similarity=0.158 Sum_probs=94.1
Q ss_pred eeeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCC--
Q 011014 38 NVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPE-- 115 (495)
Q Consensus 38 ~ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~-- 115 (495)
.++.+...+||.+....+....+..--.++.-|.......+. ...-++|++ .++.+|+..+.-+ ++-++.....
T Consensus 60 ~l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TG--didiHdia~-~~~~l~fVNT~fS-CLatl~~~~SF~ 135 (335)
T TIGR03032 60 SLTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTG--DIDAHDLAL-GAGRLLFVNTLFS-CLATVSPDYSFV 135 (335)
T ss_pred eEEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeecc--Ccchhheee-cCCcEEEEECcce-eEEEECCCCccc
Confidence 355677789998833333322222211222222222211111 125678899 5788999888666 5555543321
Q ss_pred --ccccccCCCcCccccCCcceEEEcCCCCEEEEECCCC---EEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccC
Q 011014 116 --GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM---AIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFS 187 (495)
Q Consensus 116 --g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~---rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~ 187 (495)
-+.-+...-.. .-=++-+|+|+++..--||+--... .=++=. .+| +--+..+. .-..-|.
T Consensus 136 P~WkPpFIs~la~-eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~e-----------vl~~GLs 203 (335)
T TIGR03032 136 PLWKPPFISKLAP-EDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGE-----------VVASGLS 203 (335)
T ss_pred cccCCccccccCc-cCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCC-----------EEEcCcc
Confidence 11111111111 1124556999985444887632210 000000 111 11111000 0001144
Q ss_pred CCceEEEECCCCeEEEEECCCCeEEEEECC-CCceeeCCCCCCcceEEEE
Q 011014 188 NDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCSDNYDDTFHLGIFVL 236 (495)
Q Consensus 188 ~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~-g~~~~~~~~~g~P~GIAvd 236 (495)
.|.+--. -+|.|||+|.+.+.|..++++ |.......-.|+|.|++..
T Consensus 204 mPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 204 MPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred CCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 5555443 468999999999999999998 6655556677899999999
No 47
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.7 Score=49.53 Aligned_cols=164 Identities=14% Similarity=0.094 Sum_probs=94.8
Q ss_pred ceEEEEcCCCcEEEEECCC-------C------eeEEEEcCCCCcccc-ccCCC---cCccccCCcceEEEcCC-CCEEE
Q 011014 85 PFSVAVSPSGELLVLDSEN-------N------SRPKLVAGSPEGYYG-HVDGR---PRGARMNHPKGLAVDDR-GNIYI 146 (495)
Q Consensus 85 P~GIAVd~dG~LyVaDs~n-------~------~ii~ivaGs~~g~~G-~~dG~---~~~a~f~~P~GIAVD~d-GnIYV 146 (495)
-..|++++||.|||+-..+ + .++++-. .+... +.++. .-...+.+|.|+++++. |.||+
T Consensus 179 g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~---a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 179 GGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDR---AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred cccEEECCCCcEEEEeCCCCCcccccCccccccceeeecc---CcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 3569999999999986555 1 1122210 01100 00111 11335789999999995 99999
Q ss_pred EECCCCEEEEEcCCCcEEEe-cCcccCC--------CC--CCCCCCcCccc----------CCCceEEEECCC------C
Q 011014 147 ADTMNMAIRKISDTGVTTIA-GGKWSRG--------VG--HVDGPSEDAKF----------SNDFDVVYVGSS------C 199 (495)
Q Consensus 147 AD~~N~rIrk~d~~GV~tia-Gg~~G~~--------~g--~~dG~~~~a~f----------~~P~gVa~vd~~------G 199 (495)
+|.+...+ +-.+.+..+. |+..|-. .+ ..+ +...+.+ ..|.++++-+.+ +
T Consensus 256 ~e~g~d~~--~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~-~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~ 332 (399)
T COG2133 256 TEHGPDAL--RGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPD-GTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRG 332 (399)
T ss_pred EecCCCcc--cCcccccccccCCccCCceeccCcccCccccCC-CcccccccCCceeeccccccceeEEecCCcCccccC
Confidence 99887555 2222222221 1111100 00 001 1111111 345788866554 7
Q ss_pred eEEEEECCCCeEEEEECCCC---ceee---CCCCCCcceEEEEecCcCeEEEEEcc-CCceEEE
Q 011014 200 SLLVIDRGNQAIREIQLHDD---DCSD---NYDDTFHLGIFVLVAAAFFGYMLALL-QRRVQAM 256 (495)
Q Consensus 200 ~LyVaD~gN~rI~~~d~~g~---~~~~---~~~~g~P~GIAvd~~a~~~~yv~d~~-~~Rv~~~ 256 (495)
.+||+-.+.-.+...+++++ .... ....|.|.++++.. .+.+||++-. +.+|-++
T Consensus 333 ~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~--DGallv~~D~~~g~i~Rv 394 (399)
T COG2133 333 DLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP--DGALLVLTDQGDGRILRV 394 (399)
T ss_pred cEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC--CCeEEEeecCCCCeEEEe
Confidence 89999998888888999997 2221 22447999999997 6778888777 5466444
No 48
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.11 E-value=0.24 Score=53.89 Aligned_cols=111 Identities=8% Similarity=-0.053 Sum_probs=67.3
Q ss_pred ccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-c-EEEecCcccCCCCCCCCCCcCcccCCCceEEEE------CCCCe
Q 011014 129 RMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV------GSSCS 200 (495)
Q Consensus 129 ~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V-~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v------d~~G~ 200 (495)
.|..|++|++.++|+|||++...++|++++.++ . ..+.+... . ........+.+|++. ..++.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~-v--------~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPE-I--------VNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCc-e--------eccCCCCceeeEEECCCccccCCCcE
Confidence 478999999999999999998889999998654 2 33322110 0 001123466788843 23457
Q ss_pred EEEEEC---------CCCeEEEEECCCC--ce-----ee--CCCCC--CcceEEEEecCcCeEEEEEccC
Q 011014 201 LLVIDR---------GNQAIREIQLHDD--DC-----SD--NYDDT--FHLGIFVLVAAAFFGYMLALLQ 250 (495)
Q Consensus 201 LyVaD~---------gN~rI~~~d~~g~--~~-----~~--~~~~g--~P~GIAvd~~a~~~~yv~d~~~ 250 (495)
|||+-+ ...+|.++.++.. .+ .. ....+ .-..|+++. .+.|||+-...
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP--DG~LYVs~GD~ 166 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP--DGKIYYTIGEQ 166 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC--CCcEEEEECCC
Confidence 999842 2568988887632 11 11 11111 233455554 55788877665
No 49
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=94.72 E-value=0.31 Score=53.99 Aligned_cols=81 Identities=21% Similarity=0.412 Sum_probs=53.8
Q ss_pred ccccCCcceEEEcC-CCCEEEEECCCC-------------------EEEEEcCCC---------cEE-EecCcccCCCCC
Q 011014 127 GARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTG---------VTT-IAGGKWSRGVGH 176 (495)
Q Consensus 127 ~a~f~~P~GIAVD~-dGnIYVAD~~N~-------------------rIrk~d~~G---------V~t-iaGg~~G~~~g~ 176 (495)
...|.+|.||++++ +|.|||+-+.|. +|.++..++ ..+ +.++........
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 45899999999998 688999988776 788888543 111 112211100011
Q ss_pred CCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014 177 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 208 (495)
Q Consensus 177 ~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN 208 (495)
.........|+.|-.|+ ++.+|+|||+.-++
T Consensus 426 ~~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLA-FDPDGNLWIQEDGG 456 (524)
T ss_pred ccCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence 12234456799999999 68899999886433
No 50
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=94.53 E-value=0.33 Score=53.87 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCCCceEEEEcC-CCcEEEEECCCC-------------------eeEEEEcCCC-------C----ccccc-------cC
Q 011014 81 FGMEPFSVAVSP-SGELLVLDSENN-------------------SRPKLVAGSP-------E----GYYGH-------VD 122 (495)
Q Consensus 81 ~~~~P~GIAVd~-dG~LyVaDs~n~-------------------~ii~ivaGs~-------~----g~~G~-------~d 122 (495)
.+.+|.+|++++ +|.|||+-+.+. .++++..... . -..|. ..
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 457999999998 689999987665 2333321110 0 00010 01
Q ss_pred CCcCccccCCcceEEEcCCCCEEEEECC-CCE--EEEEcCCC
Q 011014 123 GRPRGARMNHPKGLAVDDRGNIYIADTM-NMA--IRKISDTG 161 (495)
Q Consensus 123 G~~~~a~f~~P~GIAVD~dGnIYVAD~~-N~r--Irk~d~~G 161 (495)
.......|..|-+|++|++|+|||+.-. ++. |.-...+|
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G 469 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDG 469 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccC
Confidence 1123567999999999999999998543 332 34444555
No 51
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.41 E-value=0.59 Score=49.34 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=50.9
Q ss_pred Ccce---EEEcCCCC-EEEE-EC--------CCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE
Q 011014 132 HPKG---LAVDDRGN-IYIA-DT--------MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV 195 (495)
Q Consensus 132 ~P~G---IAVD~dGn-IYVA-D~--------~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v 195 (495)
+|.| ||++++|+ |||+ .. ..+.|.+||... +..+.-| ..|.+|++.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS 307 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVS 307 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEEC
Confidence 5666 99998754 9995 32 236999999554 4444221 267888854
Q ss_pred CCCC-eEEEEECCCCeEEEEECCCCcee
Q 011014 196 GSSC-SLLVIDRGNQAIREIQLHDDDCS 222 (495)
Q Consensus 196 d~~G-~LyVaD~gN~rI~~~d~~g~~~~ 222 (495)
.+.. .||+++..++.|.+||.......
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 4444 68889989999999998876543
No 52
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.99 E-value=0.11 Score=36.31 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=28.7
Q ss_pred ccCCcceEEEcCC-CCEEEEECCCCEEEEEcCCC
Q 011014 129 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 129 ~f~~P~GIAVD~d-GnIYVAD~~N~rIrk~d~~G 161 (495)
.+..|.|||+|.. +.||.+|...+.|.+.+-+|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 5678999999995 56999999999999988766
No 53
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.72 E-value=11 Score=40.20 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=65.2
Q ss_pred ccCCcceEEEc---CCCCEEE--EECCCCEEEEEc----CCC-c-----EEEecCcccCCCCCCCCCCcCcccCCCceEE
Q 011014 129 RMNHPKGLAVD---DRGNIYI--ADTMNMAIRKIS----DTG-V-----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 193 (495)
Q Consensus 129 ~f~~P~GIAVD---~dGnIYV--AD~~N~rIrk~d----~~G-V-----~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa 193 (495)
.+..|.|+|+- .+|.+|+ .+. ++++..+- .+| + ..+. .-+.+.+++
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~------------------~~sQ~EGCV 214 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFK------------------VGSQPEGCV 214 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE-------------------SS-EEEEE
T ss_pred ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEec------------------CCCcceEEE
Confidence 46678899984 2566554 443 45555443 344 2 2221 113678888
Q ss_pred EECCCCeEEEEECCCCeEEEEECCCCc------eeeCCCCCC---cceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 194 YVGSSCSLLVIDRGNQAIREIQLHDDD------CSDNYDDTF---HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 194 ~vd~~G~LyVaD~gN~rI~~~d~~g~~------~~~~~~~g~---P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
++|..|.|||++. +.-|++++.+-+. +....+.++ ..||++-.+..+.+|+..+.|..-.-.++..+.
T Consensus 215 VDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 215 VDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8899999999996 4799999987432 112233333 679999765555555544444443336666554
No 54
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=93.70 E-value=10 Score=41.80 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=95.0
Q ss_pred ecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEE
Q 011014 66 FEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY 145 (495)
Q Consensus 66 ~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIY 145 (495)
...|.+....+.|....+.-.+++.+..|+|+....++. ++++.....+.....- ...=.+|.|+|+.++|.+.
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~--l~~~~~~~~~~t~~~~----~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT--LRVISLKDNGYTKSEV----VKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCe--EEEEecccCcccccce----eecCCCceeEEEcCCCCEE
Confidence 333333333333444445677899988899999988887 3333221112211100 0112579999999998766
Q ss_pred EEECCCCEEEEEc-CCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee--
Q 011014 146 IADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-- 222 (495)
Q Consensus 146 VAD~~N~rIrk~d-~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~-- 222 (495)
|.-... .|..+. ..+++++--+ ..|.++| +..+++....--....|+.+++.|....
T Consensus 421 vv~~~~-~iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 421 VVACIS-DIVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred EEEecC-cEEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCcccce
Confidence 554433 344444 5556666211 2566777 6778877777766778999999996632
Q ss_pred --eCCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014 223 --DNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 223 --~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
...-.+-+..|+... ..-|.++...+|..
T Consensus 481 ~~~~~h~a~iT~vaySp---d~~yla~~Da~rkv 511 (603)
T KOG0318|consen 481 AKLLEHRAAITDVAYSP---DGAYLAAGDASRKV 511 (603)
T ss_pred eeeecccCCceEEEECC---CCcEEEEeccCCcE
Confidence 233445567777765 23466666666663
No 55
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=93.60 E-value=1.2 Score=52.11 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=106.2
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeeEEEE-cCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECC-CCEEEEEc
Q 011014 83 MEPFSVAVSP-SGELLVLDSENNSRPKLV-AGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM-NMAIRKIS 158 (495)
Q Consensus 83 ~~P~GIAVd~-dG~LyVaDs~n~~ii~iv-aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~-N~rIrk~d 158 (495)
..|.++|+|- .+++|-+|..+..+.... .|+. ... .....+..|..+++|+ .|.+|.+|.+ ..+|.+-.
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~-~~v------l~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~ 552 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS-RKV------LVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERAS 552 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCc-eeE------EEecCCCCccceeeccccCeeEEecCCCCchhhhhc
Confidence 4799999997 788999999888332222 2332 111 1112347899999999 8889999998 55788877
Q ss_pred CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC-eEEEEECCCCcee--eCCCCCCcceE
Q 011014 159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDCS--DNYDDTFHLGI 233 (495)
Q Consensus 159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~-rI~~~d~~g~~~~--~~~~~g~P~GI 233 (495)
.+| ..++.. ..+..|+++++.-.+..+|-+|.... .|..++.+|..-. .......|.++
T Consensus 553 ~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~ 616 (877)
T KOG1215|consen 553 LDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGL 616 (877)
T ss_pred CCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEE
Confidence 888 333321 11568999997777889999999888 7999999997653 34455579999
Q ss_pred EEEecCcCeEEEEEccCCceE
Q 011014 234 FVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 234 Avd~~a~~~~yv~d~~~~Rv~ 254 (495)
++- ...+|.++...+-+.
T Consensus 617 ~~~---~~~iyw~d~~~~~~~ 634 (877)
T KOG1215|consen 617 SVF---EDYIYWTDWSNRAIS 634 (877)
T ss_pred EEe---cceeEEeeccccceE
Confidence 998 578999999887553
No 56
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=93.31 E-value=2.7 Score=44.49 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=48.4
Q ss_pred cceEEEcCCCC-EEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014 133 PKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 208 (495)
Q Consensus 133 P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN 208 (495)
+.++++.+||+ +||+.. .+.|.++|..- +.++.-| ..|.++++..+...|||++...
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G------------------~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG------------------GNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S------------------SEEEEEEE--TTTEEEEEEEET
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC------------------CCcceEEEcCCCCEEEEEecCC
Confidence 45688889887 999986 57999999433 5666332 2578888544445789999999
Q ss_pred CeEEEEECCCCce
Q 011014 209 QAIREIQLHDDDC 221 (495)
Q Consensus 209 ~rI~~~d~~g~~~ 221 (495)
+.|..||..+...
T Consensus 100 ~~v~v~D~~tle~ 112 (369)
T PF02239_consen 100 GTVSVIDAETLEP 112 (369)
T ss_dssp TEEEEEETTT--E
T ss_pred CceeEeccccccc
Confidence 9999999887554
No 57
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.31 E-value=0.31 Score=35.35 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=32.6
Q ss_pred CeEEEEECCCC-eEEEEECCCCceee--CCCCCCcceEEEE
Q 011014 199 CSLLVIDRGNQ-AIREIQLHDDDCSD--NYDDTFHLGIFVL 236 (495)
Q Consensus 199 G~LyVaD~gN~-rI~~~d~~g~~~~~--~~~~g~P~GIAvd 236 (495)
++||-+|.+.+ .|.+.+++|..... ......|.|||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 57999999999 99999999988654 4556679999998
No 58
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.29 E-value=0.21 Score=51.01 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=45.7
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEcCCC------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC--CCeEEE
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLV 203 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~--~G~LyV 203 (495)
.-.|+++|++|+||++|..++.|.++++++ +.+++- ..-.|.+|.++. ++. +|.|||
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--------------d~~~l~~pd~~~-i~~~~~g~L~v 251 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--------------DPRTLQWPDGLK-IDPEGDGYLWV 251 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---------------CC-GSSEEEEE-E-T--TS-EEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--------------cCceeeccceee-eccccCceEEE
Confidence 346999999999999999999999999877 445532 112488999999 677 899999
Q ss_pred EE
Q 011014 204 ID 205 (495)
Q Consensus 204 aD 205 (495)
.-
T Consensus 252 ~s 253 (287)
T PF03022_consen 252 LS 253 (287)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 59
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=93.00 E-value=1.4 Score=47.38 Aligned_cols=124 Identities=23% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCceEEEEcCC-CcEEEEECCCCee-----EEE-EcCCCCc----cccc-cCCC-----cCcccc----------CCcce
Q 011014 83 MEPFSVAVSPS-GELLVLDSENNSR-----PKL-VAGSPEG----YYGH-VDGR-----PRGARM----------NHPKG 135 (495)
Q Consensus 83 ~~P~GIAVd~d-G~LyVaDs~n~~i-----i~i-vaGs~~g----~~G~-~dG~-----~~~a~f----------~~P~G 135 (495)
-+|.|+++++. |.||++|.+.... +.. -.|...| ++|. .++. ...+.+ -.|.|
T Consensus 239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsG 318 (399)
T COG2133 239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSG 318 (399)
T ss_pred CCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccce
Confidence 68999999995 9999999887311 111 1122111 0010 0110 001111 23579
Q ss_pred EEEcC-C------CCEEEEECCCCEEEEEcCCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014 136 LAVDD-R------GNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG 207 (495)
Q Consensus 136 IAVD~-d------GnIYVAD~~N~rIrk~d~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g 207 (495)
|++-. + |.+||+--+.-.+...+.+| ...+..+... + +. ...|.+|+ +..||.|||+|-.
T Consensus 319 maFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d~------~gR~~dV~-v~~DGallv~~D~ 386 (399)
T COG2133 319 MAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--DL------GGRPRDVA-VAPDGALLVLTDQ 386 (399)
T ss_pred eEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--CC------CCcccceE-ECCCCeEEEeecC
Confidence 99984 2 78999998887788888777 2333211110 0 00 14899998 7999999999877
Q ss_pred -CCeEEEEECCC
Q 011014 208 -NQAIREIQLHD 218 (495)
Q Consensus 208 -N~rI~~~d~~g 218 (495)
|.+|.++...+
T Consensus 387 ~~g~i~Rv~~~~ 398 (399)
T COG2133 387 GDGRILRVSYAG 398 (399)
T ss_pred CCCeEEEecCCC
Confidence 67999998754
No 60
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.21 E-value=12 Score=38.63 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=63.9
Q ss_pred CcceEEEcCCCCEEEEECCC------CEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe-EE
Q 011014 132 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LL 202 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N------~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~-Ly 202 (495)
-+.||+++.+|.+||++-+. ++|++|+.+| +..+.- ....... ..+......=....+|+ +..+|. ||
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~-~~~~~~~~~N~G~E~la-~~~dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPD-ANGTSGRRNNRGFEGLA-VSPDGRTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccc-cCccccccCCCCeEEEE-ECCCCCEEE
Confidence 78899998899999999999 9999999888 333310 1000000 00000011112345677 566666 77
Q ss_pred EEECCC---------------CeEEEEECCC-C-c---eeeCCC------CC-CcceEEEEecCcCeEEEEEcc
Q 011014 203 VIDRGN---------------QAIREIQLHD-D-D---CSDNYD------DT-FHLGIFVLVAAAFFGYMLALL 249 (495)
Q Consensus 203 VaD~gN---------------~rI~~~d~~g-~-~---~~~~~~------~g-~P~GIAvd~~a~~~~yv~d~~ 249 (495)
++-... .||.+++... . . ..+... .+ .+..|+... ...++|.+..
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~--d~~lLvLER~ 234 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP--DGRLLVLERD 234 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC--CCcEEEEEcc
Confidence 764322 5777888764 1 1 122211 12 245555554 4557888876
No 61
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.04 E-value=0.23 Score=41.93 Aligned_cols=31 Identities=16% Similarity=0.435 Sum_probs=27.4
Q ss_pred cccCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 011014 128 ARMNHPKGLAVDDRGN-IYIADTMNMAIRKIS 158 (495)
Q Consensus 128 a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d 158 (495)
..|..|.||++|++++ |||||...+.|+++.
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 3578999999999765 999999999999886
No 62
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=91.83 E-value=2.8 Score=49.15 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=105.4
Q ss_pred CceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCCC
Q 011014 84 EPFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 84 ~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~G 161 (495)
....+.++. ++.+|-+|.....+-........... ........|.|+|+|- .+++|-+|..+..|.+.+.+|
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~------~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g 511 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE------LCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDG 511 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccce------EeccCccccCcEEEEeccCCceecccCCceeEEEEccC
Confidence 344444443 45688888766534333221110111 1223567899999998 678999999999999999666
Q ss_pred --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-CCeEEEEECCCCceee--CCCCCCcceEEEE
Q 011014 162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--NYDDTFHLGIFVL 236 (495)
Q Consensus 162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g-N~rI~~~d~~g~~~~~--~~~~g~P~GIAvd 236 (495)
..++++. .+..|..+++....|.+|.+|++ ..+|-+-.++|..... ..+...|.|+++|
T Consensus 512 ~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d 575 (877)
T KOG1215|consen 512 SSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTID 575 (877)
T ss_pred CceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEE
Confidence 3444332 13578888877779999999998 5689999999977654 2335689999999
Q ss_pred ecCcCeEEEEEccCC-ceEEEeeCCCC
Q 011014 237 VAAAFFGYMLALLQR-RVQAMFSSKDD 262 (495)
Q Consensus 237 ~~a~~~~yv~d~~~~-Rv~~~~~s~~~ 262 (495)
.. ..-+|.+|...+ -+.+.......
T Consensus 576 ~~-~~~~yw~d~~~~~~i~~~~~~g~~ 601 (877)
T KOG1215|consen 576 YE-TDRLYWADAKLDYTIESANMDGQN 601 (877)
T ss_pred ee-cceeEEEcccCCcceeeeecCCCc
Confidence 85 456788888877 46555555444
No 63
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.77 E-value=0.51 Score=32.88 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.5
Q ss_pred ccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014 185 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220 (495)
Q Consensus 185 ~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~ 220 (495)
.+..|.++++....+.||.+|...+.|.+.+.+|..
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 467899999777788999999999999999998854
No 64
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=91.14 E-value=1.8 Score=48.04 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=45.4
Q ss_pred CCCceEEEEcC-CCcEEEEECCCC----------------eeEEEEcCCC--C---------ccccc---cC----CCcC
Q 011014 82 GMEPFSVAVSP-SGELLVLDSENN----------------SRPKLVAGSP--E---------GYYGH---VD----GRPR 126 (495)
Q Consensus 82 ~~~P~GIAVd~-dG~LyVaDs~n~----------------~ii~ivaGs~--~---------g~~G~---~d----G~~~ 126 (495)
..+|.+|++.+ .|++|++.+.|. .+++++..+. . -..|. .. ....
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 47999999998 688999998766 2344443221 0 00111 01 1112
Q ss_pred ccccCCcceEEEcCCCCEEEEECC
Q 011014 127 GARMNHPKGLAVDDRGNIYIADTM 150 (495)
Q Consensus 127 ~a~f~~P~GIAVD~dGnIYVAD~~ 150 (495)
...|+.|-+|++|+.|+|||+--+
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred cccccCCCceEECCCCCEEEEecC
Confidence 356999999999999999998544
No 65
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.54 E-value=5.1 Score=41.48 Aligned_cols=127 Identities=21% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCcEEEEECCC------CeeEEEEc-CCCCccc---ccc----CCCcCccccCCcceEEEcCCCC-EEEE
Q 011014 83 MEPFSVAVSPSGELLVLDSEN------NSRPKLVA-GSPEGYY---GHV----DGRPRGARMNHPKGLAVDDRGN-IYIA 147 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n------~~ii~iva-Gs~~g~~---G~~----dG~~~~a~f~~P~GIAVD~dGn-IYVA 147 (495)
..+.||++.++|.+||++-.. +.+.++-. |...... ... .+......=....|||+.++|. ||++
T Consensus 85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 378899998899999999988 75555432 2221111 000 0000000112356999999999 8876
Q ss_pred E-------CC--------CCEEEEEcCC--C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC-
Q 011014 148 D-------TM--------NMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG- 207 (495)
Q Consensus 148 D-------~~--------N~rIrk~d~~--G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g- 207 (495)
= .. ..||.+++.. | ...++--. +.+.....-..+.++++ -+++.|+|.++.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~l--------d~~~~~~~~~~isd~~a-l~d~~lLvLER~~ 235 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPL--------DPPPTAPGDNGISDIAA-LPDGRLLVLERDF 235 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeC--------CccccccCCCCceeEEE-ECCCcEEEEEccC
Confidence 2 11 1577888843 3 22221100 00000013456777885 456679999987
Q ss_pred ------CCeEEEEECCC
Q 011014 208 ------NQAIREIQLHD 218 (495)
Q Consensus 208 ------N~rI~~~d~~g 218 (495)
..+|+++++..
T Consensus 236 ~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 236 SPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCCccceEEEEEEEccc
Confidence 34677777664
No 66
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=90.40 E-value=1.2 Score=49.30 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=52.6
Q ss_pred CccccCCcceEEEcC-CCCEEEEECCCC----------------EEEEEcC-CC----------cEEEecCcccCCCCCC
Q 011014 126 RGARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKISD-TG----------VTTIAGGKWSRGVGHV 177 (495)
Q Consensus 126 ~~a~f~~P~GIAVD~-dGnIYVAD~~N~----------------rIrk~d~-~G----------V~tiaGg~~G~~~g~~ 177 (495)
....|.+|.+|++.+ .|.+|++.+.|. +|.++-+ ++ ++..+|.......+..
T Consensus 412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred CCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 456899999999998 778999999876 3555542 22 2333332221111111
Q ss_pred CCCCcCcccCCCceEEEECCCCeEEEEECCC
Q 011014 178 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 208 (495)
Q Consensus 178 dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN 208 (495)
.......|+.|-+|+ +|+.|+|||+.-++
T Consensus 492 -~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~ 520 (616)
T COG3211 492 -ANINANWFNSPDNLA-FDPWGRLWIQTDGS 520 (616)
T ss_pred -cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence 112225699999999 79999999986544
No 67
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.92 E-value=19 Score=38.96 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=74.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G- 161 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G- 161 (495)
.-.++++.++|.+.++-+... .+++.+-...+..-.. ..+.-..-..++++++|+++++=...+.|+.++-. |
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~-tiriwd~~~~~~~~~~----l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDK-TLRIWDLKDDGRNLKT----LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ceeeeEECCCCcEEEEecCCc-eEEEeeccCCCeEEEE----ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 346788889998666655444 6666543111111000 01122344799999999999999999999999944 4
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~ 220 (495)
+.++.+-.. .-.+++ +..+++++++-...+.|+.+|..+..
T Consensus 280 ~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 280 CVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred EEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence 455533211 123445 67888888777789999999999888
No 68
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.17 E-value=29 Score=39.99 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=90.8
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcccc--ccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014 82 GMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYG--HVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD 159 (495)
Q Consensus 82 ~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G--~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~ 159 (495)
...-..++..|||.+.++-.... .+++..-.. |.+- +.+ .=..-+++.+..+|+..++-+..++||.+|-
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~S-gfC~vTFte------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDG-KVKVWNTQS-GFCFVTFTE------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCC-cEEEEeccC-ceEEEEecc------CCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 34567889999999999887776 566654322 1111 100 1122358899999999999999999999994
Q ss_pred -CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE-CCCCeEEEEECCCCcee-eCCCCCCc-ceE
Q 011014 160 -TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID-RGNQAIREIQLHDDDCS-DNYDDTFH-LGI 233 (495)
Q Consensus 160 -~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD-~gN~rI~~~d~~g~~~~-~~~~~g~P-~GI 233 (495)
.+ ..|+.. ....+| .+|+ +|++|.|.+|- ..+-.|.+.+..++... ...+.--| .++
T Consensus 422 kRYrNfRTft~-------------P~p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 422 KRYRNFRTFTS-------------PEPIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred cccceeeeecC-------------CCceee---eEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 44 455532 112334 3566 78888887765 46668888888776553 22222233 456
Q ss_pred EEEecCcCeEEEEEccCCce
Q 011014 234 FVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 234 Avd~~a~~~~yv~d~~~~Rv 253 (495)
++.. .+...++..+..-|
T Consensus 485 ~f~~--~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 485 SFSP--DGSLLASGSWDKTV 502 (893)
T ss_pred EEcc--ccCeEEeccccceE
Confidence 6665 33445555555555
No 69
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=89.13 E-value=0.73 Score=32.84 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.1
Q ss_pred CCceEEEEcCCCcEEEEECCC
Q 011014 83 MEPFSVAVSPSGELLVLDSEN 103 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n 103 (495)
..+.+|++|++|+|||+-..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 469999999999999997644
No 70
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.99 E-value=1.1 Score=31.27 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=29.4
Q ss_pred CCCeEEEEECCCCeEEEEECCCCceee-CCCCCCcceEEEE
Q 011014 197 SSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFVL 236 (495)
Q Consensus 197 ~~G~LyVaD~gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd 236 (495)
..+.|||++.+.+.|.+|++....... ..-...|.+|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 356799999999999999987655433 3333468888763
No 71
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.79 E-value=0.35 Score=34.52 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=16.6
Q ss_pred CCcceEEEcCCCCEEEEEC
Q 011014 131 NHPKGLAVDDRGNIYIADT 149 (495)
Q Consensus 131 ~~P~GIAVD~dGnIYVAD~ 149 (495)
..+.+||+|.+|||||+=.
T Consensus 13 ~~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eeEEEEEECCCCCEEEEEe
Confidence 3688999999999999854
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=13 Score=38.59 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=75.4
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCC-----CCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGS-----PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs-----~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
.+--+|.||+|-|+.+-.++. .|++.+-. +...+.-.+ .....=++|-+.++|...+.-+.++-|..+|
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~-----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITD-----NDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred CCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCC-----CCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 344578899998888887777 67765422 222222111 2333445999999999666666688889998
Q ss_pred -CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014 159 -DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 159 -~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
-+| +.++.+-.. ..+.|.+-+ ..+++..+++-.++++|.+.+++....
T Consensus 216 Af~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 567 566644221 123444444 567788888888889999998876543
No 73
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=88.17 E-value=13 Score=40.05 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=88.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEE---cCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~iv---aGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~ 160 (495)
.-.+|++.+||.|..+..... .-++. .|..+ -..+| ....-.+|+++++|....+-+..+.++++|-.
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~i---m~L~g-----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCI---MFLAG-----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred ccceeEecCCCceeeccCccc-hhheeecccCcEE---EEecc-----cccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 456889999999888754333 11111 11110 00011 23344599999999999998888888888854
Q ss_pred C---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceEEEEe
Q 011014 161 G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLV 237 (495)
Q Consensus 161 G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~ 237 (495)
+ +.+|.+- -+--..|.+....|+.+++-...+.+...+..+..+...-..--..=+++|.
T Consensus 376 ~r~~ly~ipAH-----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 376 MRSELYTIPAH-----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred ccccceecccc-----------------cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence 4 6777331 1233556765568889999999999999988776664321111134455555
Q ss_pred cCcCeEEEEEccCCceEEEe
Q 011014 238 AAAFFGYMLALLQRRVQAMF 257 (495)
Q Consensus 238 ~a~~~~yv~d~~~~Rv~~~~ 257 (495)
...+...++....+-+ |+|
T Consensus 439 s~d~~~i~t~s~DRT~-KLW 457 (459)
T KOG0272|consen 439 SPDSQAIATSSFDRTI-KLW 457 (459)
T ss_pred ccCCceEEEeccCcee-eec
Confidence 4444434454444433 554
No 74
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=87.82 E-value=2 Score=36.29 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=27.9
Q ss_pred cCCCceEEEECCCCeEEEEECCCCeEEEEECCC
Q 011014 186 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 218 (495)
Q Consensus 186 f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g 218 (495)
|..|+||++......|||++...+.|+++..+.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 678999996555678999999999999998653
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.81 E-value=22 Score=32.72 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=74.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCC-EEEEECCCCEEEEEcCCC-
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG- 161 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~G- 161 (495)
....+++++++.++++...+. .+.++.-.......... ..-.....++++++|+ |+++.. ++.|+.++...
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEe-----cCccccceEEECCCcCEEEEecC-CCcEEEEECCCC
Confidence 456777887777666655333 34443221000000000 0112456889999885 555544 78899998543
Q ss_pred --cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee-e-CCCCCCcceEEEEe
Q 011014 162 --VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS-D-NYDDTFHLGIFVLV 237 (495)
Q Consensus 162 --V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~-~-~~~~g~P~GIAvd~ 237 (495)
+..+.+ .-.....++ ..+++.++++...++.|+.++....... . ....+....+++..
T Consensus 210 ~~~~~~~~-----------------~~~~i~~~~-~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 210 KCLGTLRG-----------------HENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271 (289)
T ss_pred ceecchhh-----------------cCCceEEEE-EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC
Confidence 222211 011344566 4555777777766788998888754332 2 22222345666664
Q ss_pred cCcCeEEEEEccCCce
Q 011014 238 AAAFFGYMLALLQRRV 253 (495)
Q Consensus 238 ~a~~~~yv~d~~~~Rv 253 (495)
.+...++...++.+
T Consensus 272 --~~~~l~~~~~d~~i 285 (289)
T cd00200 272 --DGKRLASGSADGTI 285 (289)
T ss_pred --CCCEEEEecCCCeE
Confidence 33344555555444
No 76
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=37 Score=33.86 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=42.8
Q ss_pred CCCEEEEECCCCEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 011014 141 RGNIYIADTMNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 216 (495)
Q Consensus 141 dGnIYVAD~~N~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~ 216 (495)
+|.||.-=....+|.+++++ | |....--. +- ...-.....+.+-++|||+++..+.+|++-..=-.+..+..
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS-~L---~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLS-GL---LKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEcc-CC---chhcCccccccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence 57777776778899999954 4 32221110 00 00001122346789999988888899998765455555443
No 77
>PRK02888 nitrous-oxide reductase; Validated
Probab=86.35 E-value=6.3 Score=44.64 Aligned_cols=72 Identities=10% Similarity=-0.023 Sum_probs=54.2
Q ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEECCCCc------------eeeCCCCCC-cceEEEEecCcCeEEEEEccCCce
Q 011014 187 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD------------CSDNYDDTF-HLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 187 ~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~------------~~~~~~~g~-P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
.+|+||.+.++...+||+....+.|.+||..... +......|. |.-.++|. .++.|++-++.+-|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg--~G~aytslf~dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG--RGNAYTTLFLDSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC--CCCEEEeEeeccee
Confidence 4799999544444689999999999999988733 223444454 99999986 56899999999999
Q ss_pred EEEeeCC
Q 011014 254 QAMFSSK 260 (495)
Q Consensus 254 ~~~~~s~ 260 (495)
.+....+
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 7765443
No 78
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=86.24 E-value=1.7 Score=31.41 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCEEEEECCCC-EEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEE
Q 011014 142 GNIYIADTMNM-AIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVY 194 (495)
Q Consensus 142 GnIYVAD~~N~-rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~ 194 (495)
|+||-+|...+ +|.+.+.+| ..++.- ..+..|.+||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~----------------~~l~~P~giaV 40 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVIS----------------DDLQHPEGIAV 40 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEE----------------SSTSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEE----------------CCCCCcCEEEE
Confidence 57999999999 999999888 455532 13779999994
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.05 E-value=51 Score=35.73 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=90.1
Q ss_pred eEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC---
Q 011014 86 FSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG--- 161 (495)
Q Consensus 86 ~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G--- 161 (495)
..+.+.++|..+++-.... .+++..-.. +.. ..... ....-..-.++++.++|.+.++=.....|+++|. +.
T Consensus 163 ~~~~fs~~g~~l~~~~~~~-~i~~~~~~~-~~~-~~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDG-LIRIWKLEG-IKS-NLLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred EEEEEcCCCCeEEEccCCC-cEEEeeccc-ccc-hhhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 3466788888755443333 444332110 000 00000 0112233459999999998888888899999984 33
Q ss_pred cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCCCCcceEEEEecC
Q 011014 162 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDDTFHLGIFVLVAA 239 (495)
Q Consensus 162 V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~a 239 (495)
+.++.|- ...-++++ +.++|+++++-...+.|+..+..+..|.. ....+.=.++++..
T Consensus 239 ~~~l~gH-----------------~~~v~~~~-f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-- 298 (456)
T KOG0266|consen 239 LKTLKGH-----------------STYVTSVA-FSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-- 298 (456)
T ss_pred EEEecCC-----------------CCceEEEE-ecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC--
Confidence 5666432 12336777 56667999999999999999998866653 22222224455554
Q ss_pred cCeEEEEEccCCceEEEeeCCCC
Q 011014 240 AFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 240 ~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
.+...++......| .+|....+
T Consensus 299 d~~~l~s~s~d~~i-~vwd~~~~ 320 (456)
T KOG0266|consen 299 DGNLLVSASYDGTI-RVWDLETG 320 (456)
T ss_pred CCCEEEEcCCCccE-EEEECCCC
Confidence 66666666666666 56666554
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=83.84 E-value=48 Score=38.99 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=64.7
Q ss_pred ceEEEEcCCCc-EEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC
Q 011014 85 PFSVAVSPSGE-LLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG 161 (495)
Q Consensus 85 P~GIAVd~dG~-LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G 161 (495)
-+.|++|++|+ |++++++. .++++.+ +.....-..+- .. ..-.+|+.+ ++.+++-+.++.|.++. +++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg--~ir~~~~~sd~e~P~ti~~---~g--~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDG--DIRKWKTNSDEEEPETIDI---SG--ELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred eEEEEEcCCCCEEEEecCCC--ceEEeecCCcccCCchhhc---cC--ceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 56889999998 44444433 4444432 22110000000 00 011244444 45777777788888877 443
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
-.++ .++|..|-.++.++.+|...++-...-.|..++.+....
T Consensus 87 ~~~~i-----------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 87 EEDTI-----------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred Cccce-----------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch
Confidence 1111 245677777777889999998888888888888776443
No 81
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=82.22 E-value=89 Score=34.82 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=88.5
Q ss_pred CCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014 80 KFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD 159 (495)
Q Consensus 80 ~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~ 159 (495)
.++..|.++|+.++|.+.|+-...+ ++.+-.... .+-. + --..|.++|+.++++..+.-....+|+++.-
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~-iv~l~~~~~--~~~~-~------~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISD-IVLLQDQTK--VSSI-P------IGYESSAVAVSPDGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCc-EEEEecCCc--ceee-c------cccccceEEEcCCCCEEEEecccceEEEEEe
Confidence 4568999999999987777665555 322221211 1000 0 1236889999999987777666677887775
Q ss_pred CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCC----cceE
Q 011014 160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTF----HLGI 233 (495)
Q Consensus 160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~----P~GI 233 (495)
+| ....+-. ...-..++.|++ .+++..+++---+..|..++....+..+ ..-+| =.++
T Consensus 473 ~g~~l~ee~~~--------------~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 473 SGDELKEEAKL--------------LEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCV 536 (603)
T ss_pred cCCcccceeee--------------ecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEE
Confidence 55 1111000 011124677885 5566555554467899999988877632 22222 2344
Q ss_pred EEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 234 FVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 234 Avd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
|... ......+..+...| ++.+-..
T Consensus 537 aWsP--~n~~vATGSlDt~V--iiysv~k 561 (603)
T KOG0318|consen 537 AWSP--NNKLVATGSLDTNV--IIYSVKK 561 (603)
T ss_pred EeCC--CceEEEeccccceE--EEEEccC
Confidence 4443 33455666666666 5555554
No 82
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=3.2 Score=45.04 Aligned_cols=129 Identities=14% Similarity=0.052 Sum_probs=89.3
Q ss_pred cccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE
Q 011014 128 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID 205 (495)
Q Consensus 128 a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD 205 (495)
.-|.-|.|..+|.+|+.+++|-.-|.++++.+.- +....|+. ...+ .....|..|..++ +.+++-++|+|
T Consensus 165 ~vlqvhyg~t~df~~~~d~TgV~mH~t~kp~pkla~~~L~l~~~------tvp~-~~~~~f~~~tsc~-v~~n~~ihvfa 236 (501)
T KOG3567|consen 165 FVLQVHYGLTIDFDGNYDVTGVGMHQTEKPQPKLAKTMLLLGDG------TVPG-EGTKHFETPTSCA-VEENGPIHVFA 236 (501)
T ss_pred eEEEeccccccCCCCCcccccceeeeeccCCchhhceEEeecCC------ccCC-CCccccCCCceEE-EecCcceeeEE
Confidence 3577899999999999999999999999998543 33332321 1111 2345688889998 68899999999
Q ss_pred C-CCCeEEEEECCCCceee-------CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014 206 R-GNQAIREIQLHDDDCSD-------NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPR 264 (495)
Q Consensus 206 ~-gN~rI~~~d~~g~~~~~-------~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~ 264 (495)
. -|-+|......|..+.. .-+.-.|.-..+...-...+-|++..|.|++-++.+..+-+
T Consensus 237 ~r~hTh~Lgk~vsG~lv~q~~~g~w~~ig~r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s~~~~r 303 (501)
T KOG3567|consen 237 YRCHTHILGKVVSGYLVAQKHEGHWTLIGRRDPQLPQLFEPVNHIVCVADGDNQRVRCFFQSLGRNR 303 (501)
T ss_pred eeeeehhhcceeeeeEeeeccCcceeeccccCCCchhhhcCCCcceeeecCCceEEEEEEccCCcCc
Confidence 6 45577777777766431 11122466666665445467889999999987777744443
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.94 E-value=83 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=18.5
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014 135 GLAVDDRGNIYIADTMNMAIRKISD-TG 161 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N~rIrk~d~-~G 161 (495)
+++++ ++.|||.+. ++.|..+|. +|
T Consensus 115 ~~~v~-~~~v~v~~~-~g~l~ald~~tG 140 (394)
T PRK11138 115 GVTVA-GGKVYIGSE-KGQVYALNAEDG 140 (394)
T ss_pred ccEEE-CCEEEEEcC-CCEEEEEECCCC
Confidence 45665 578999874 678999994 56
No 84
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=79.01 E-value=80 Score=32.53 Aligned_cols=128 Identities=15% Similarity=0.077 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCC--Ccccccc---CCCcCccccCCcceEEEc----CCCCEEEEECC---
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSP--EGYYGHV---DGRPRGARMNHPKGLAVD----DRGNIYIADTM--- 150 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~--~g~~G~~---dG~~~~a~f~~P~GIAVD----~dGnIYVAD~~--- 150 (495)
.+..+|..+.+|+++|+-...+.+..+-..++ .-..|.. +-......|..-+...+- .++.|-|-|..
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~ 223 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSD 223 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCC
Confidence 45677888889999998877775544432222 1111100 111122345555555555 67778887762
Q ss_pred -------CCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCC-ceEEEECCCCeEEEEECCCCeEEEEECCCCc
Q 011014 151 -------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 220 (495)
Q Consensus 151 -------N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P-~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~ 220 (495)
..+|..+|... ++.+.. .... .+ .|..+ .|=+-.-++|+++|....+.++..++++|+.
T Consensus 224 ~~~~~~s~~~v~~ld~~~~~~~~~~~-~~~~----~~------~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~v 292 (299)
T PF14269_consen 224 FNGTEPSRGLVLELDPETMTVTLVRE-YSDH----PD------GFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEV 292 (299)
T ss_pred CCCCcCCCceEEEEECCCCEEEEEEE-eecC----CC------cccccCCCcceECCCCCEEEecCCCceEEEECCCCCE
Confidence 45777788554 222211 1000 00 01011 0111123679999999999999999999976
Q ss_pred e
Q 011014 221 C 221 (495)
Q Consensus 221 ~ 221 (495)
+
T Consensus 293 v 293 (299)
T PF14269_consen 293 V 293 (299)
T ss_pred E
Confidence 5
No 85
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.97 E-value=39 Score=34.62 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=23.6
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G 161 (495)
.-.|+|+- +|..+|+=-.+|||..|--.+
T Consensus 136 DaEGLAvr-dG~~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 136 DAEGLAVR-DGDALVSFERDHRIWIYPVPP 164 (340)
T ss_pred ccccceEe-cCceEEEeeccceeEEeccCC
Confidence 34699998 999999988899999887433
No 86
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=3.1 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=31.4
Q ss_pred ccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014 127 GARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 127 ~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G 161 (495)
...|.-|.||.+|.||..|++|...|.+.+.+.++
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred CCceecCCcceecCCCcEEeecccchhhhhccccc
Confidence 34799999999999999999999999999888654
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=78.65 E-value=1.1e+02 Score=33.51 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=85.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC--
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-- 161 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-- 161 (495)
.-...++.|||.||.+-..+. +++++.-+........+| .. ..-..|++..+|.-.++-.....|+.+|-..
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpg--ht---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPG--HT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred eeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCC--CC---CceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 467789999999999998887 888875322111100011 00 1224899999999888777777799999433
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee----eCCCCCCcceEEEE
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS----DNYDDTFHLGIFVL 236 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~----~~~~~g~P~GIAvd 236 (495)
..++.-. .+..-..+. +|..|..+++-...-+|+++........ ...-+|.-.|+.+.
T Consensus 423 n~kt~~l~----------------~~~~v~s~~-fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 423 NFKTIQLD----------------EKKEVNSLS-FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred ccceeecc----------------ccccceeEE-EcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeec
Confidence 4444211 111233455 5777777666644445566654443322 12233445555555
Q ss_pred ecCcCeEEEEEccCCceEEEe
Q 011014 237 VAAAFFGYMLALLQRRVQAMF 257 (495)
Q Consensus 237 ~~a~~~~yv~d~~~~Rv~~~~ 257 (495)
...-|+++....|+.+++
T Consensus 486 ---~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 486 ---EHAQYLASTSMDAILRLY 503 (506)
T ss_pred ---ccceEEeeccchhheEEe
Confidence 234577777666665443
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=78.55 E-value=54 Score=30.09 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=76.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G- 161 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G- 161 (495)
....+++.++++++++...+. .+.+..-.......... ..-.....+++++++.++++-..++.|+.++.. +
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDK-TIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCC-eEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 456777777777777766333 33333211000000000 011246689999988877777667889999854 3
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC-eEEEEECCCCeEEEEECCCCceee-C-CCCCCcceEEEEe
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDDCSD-N-YDDTFHLGIFVLV 237 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G-~LyVaD~gN~rI~~~d~~g~~~~~-~-~~~g~P~GIAvd~ 237 (495)
+..+... -.....++ ..+++ .|+++.. ++.|+.++........ . ...+....+++..
T Consensus 169 ~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 229 (289)
T cd00200 169 CVATLTGH-----------------TGEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229 (289)
T ss_pred cceeEecC-----------------ccccceEE-ECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence 3333211 01234555 35555 4555544 7888888887544332 2 2223455666664
Q ss_pred cCcCeEEEEEccCCce
Q 011014 238 AAAFFGYMLALLQRRV 253 (495)
Q Consensus 238 ~a~~~~yv~d~~~~Rv 253 (495)
...++++.....++
T Consensus 230 --~~~~~~~~~~~~~i 243 (289)
T cd00200 230 --DGYLLASGSEDGTI 243 (289)
T ss_pred --CCcEEEEEcCCCcE
Confidence 24445555546666
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.83 E-value=29 Score=35.41 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=64.4
Q ss_pred eEEEcCCCCEEEEECCC--CEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 135 GLAVDDRGNIYIADTMN--MAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N--~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
|+.++.+|.||.+-... .+|++++.+ | +....--. .. ....||++.+ +.||..-+.++.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--------------~~-~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--------------PR-YFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--------------TT---EEEEEEET--TEEEEEESSSSE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--------------cc-ccceeEEEEC--CEEEEEEecCCe
Confidence 88887789999998764 589999954 4 22111100 01 1345788654 499999999999
Q ss_pred EEEEECCCCc-eeeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 211 IREIQLHDDD-CSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 211 I~~~d~~g~~-~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
..++|++.-. .....-.+-..|++-| +..++++|. ..++
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt~d---g~~Li~SDG-S~~L 151 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLTSD---GKRLIMSDG-SSRL 151 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEEEC---SSCEEEE-S-SSEE
T ss_pred EEEEccccceEEEEEecCCcceEEEcC---CCEEEEECC-ccce
Confidence 9999998643 3333444667999977 467888887 4666
No 90
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.87 E-value=22 Score=38.05 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=47.1
Q ss_pred CCCceEEEEcC-CCcEEEEECCCCeeEEEEcCCC---Ccccc-ccCCCcCccccCCcceEEEc----CCCCEEEEECCCC
Q 011014 82 GMEPFSVAVSP-SGELLVLDSENNSRPKLVAGSP---EGYYG-HVDGRPRGARMNHPKGLAVD----DRGNIYIADTMNM 152 (495)
Q Consensus 82 ~~~P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~---~g~~G-~~dG~~~~a~f~~P~GIAVD----~dGnIYVAD~~N~ 152 (495)
...+.|+++|. .|.|||++-.-. +-++-+.-. .+..- ..+|. .-..-..||++- .+|.|+|++.+++
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~---~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGD---GLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSS---SB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred CCcceEEEEecccCCEEEecCccE-EEEEecCCCCCCcceeeeccccc---ccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 45899999996 689999997654 666544211 11110 11111 112346688883 3566999999999
Q ss_pred EEEEEcCCC
Q 011014 153 AIRKISDTG 161 (495)
Q Consensus 153 rIrk~d~~G 161 (495)
...+|+..+
T Consensus 283 sf~Vy~r~~ 291 (381)
T PF02333_consen 283 SFAVYDREG 291 (381)
T ss_dssp EEEEEESST
T ss_pred eEEEEecCC
Confidence 999999665
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=75.92 E-value=1.1e+02 Score=32.02 Aligned_cols=66 Identities=18% Similarity=0.144 Sum_probs=41.6
Q ss_pred ceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 85 PFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
-..|.+.|-++.+++-+... .+++..-......|. ..+..+--+|+|+.|.|+.+-.++..|..+|
T Consensus 103 V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~~cqg~-------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 103 VNSLSVSPKDDTFLSSSLDK-TVRLWDLRVKKCQGL-------LNLSGRPIAAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred EEEEEecCCCCeEEecccCC-eEEeeEecCCCCceE-------EecCCCcceeECCCCcEEEEecCCCeEEEEE
Confidence 45667777667777766554 333332211111111 1334555789999999999988888999999
No 92
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=70.95 E-value=37 Score=34.06 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=28.9
Q ss_pred CchhHHHHHHHHHHHHhhccccCCCCCCcceeeceeeeeeeeccceEEEEeCCCCc
Q 011014 1 MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKT 56 (495)
Q Consensus 1 M~r~~l~llllllLll~~~ssa~a~~~P~~iv~~~~~~ia~a~~~~I~~~d~~t~~ 56 (495)
|+|.+++++++++|+.|-.+.++....|+ ++....++.+|+-.+.
T Consensus 1 ~k~~~~~~~la~~L~~cd~~~a~~~f~P~-----------manfSn~FdFDPlrGp 45 (236)
T PF06788_consen 1 MKKTLLLLALAILLAGCDNASAPESFTPE-----------MANFSNEFDFDPLRGP 45 (236)
T ss_pred CceeeHHHHHHHHhhhcccccccccCCHH-----------HhhhhhhccCCcccCC
Confidence 78888777777777777666776666665 3444455555555444
No 93
>PRK02888 nitrous-oxide reductase; Validated
Probab=70.61 E-value=13 Score=42.12 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=55.8
Q ss_pred CCcceEEEcCCCC-EEEEECCCCEEEEEcCCCcE-EEecCcccCCCCCCCCCCcCcc-cCCCceEEEECCCCeEEEEECC
Q 011014 131 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAK-FSNDFDVVYVGSSCSLLVIDRG 207 (495)
Q Consensus 131 ~~P~GIAVD~dGn-IYVAD~~N~rIrk~d~~GV~-tiaGg~~G~~~g~~dG~~~~a~-f~~P~gVa~vd~~G~LyVaD~g 207 (495)
++|+||++++||. +||+-...+.|-+||-..+. .|.+.- ...+-...+.. =..|...+ .|.+|+.|++-.-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-----~~~~~vvaevevGlGPLHTa-FDg~G~aytslf~ 394 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-----KPRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL 394 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-----CccceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence 5899999999998 89998889999999955421 121110 00000000001 13688888 5888999999988
Q ss_pred CCeEEEEECCC
Q 011014 208 NQAIREIQLHD 218 (495)
Q Consensus 208 N~rI~~~d~~g 218 (495)
...|.+.+++.
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 88999999776
No 94
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.26 E-value=47 Score=35.08 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=61.5
Q ss_pred eEEEcCCCC-EEEEECCC---------CEEEEEcCCCcEEEecCcccCCCCCCCCCC--cCcccCCCceEEEECCCCeEE
Q 011014 135 GLAVDDRGN-IYIADTMN---------MAIRKISDTGVTTIAGGKWSRGVGHVDGPS--EDAKFSNDFDVVYVGSSCSLL 202 (495)
Q Consensus 135 GIAVD~dGn-IYVAD~~N---------~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~--~~a~f~~P~gVa~vd~~G~Ly 202 (495)
.++++++|+ +|+|++.= .-|.++|...+....--. -|. ....+..++..++.+++..+|
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~---------iP~k~R~~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE---------IPPKPRAQVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE---------ETTS-B--BS--GGGEEE-TTSSEEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe---------cCCcchheecccccceEEccCCcEEE
Confidence 467888876 99998852 237778877643332100 011 112345777777667778899
Q ss_pred EEEC-CCCeEEEEECCCCceee-CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 203 VIDR-GNQAIREIQLHDDDCSD-NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 203 VaD~-gN~rI~~~d~~g~~~~~-~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
|.+. -...|-++|+....+.. ...+|. -...-. +...+.+-|...+++.+..+.++
T Consensus 111 V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPS--GNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEE--ETTEEEEEETTSCEEEEEETSTS
T ss_pred EEccCCCCeEEEEECCCCceeeeecCCCE--EEEEec--CCCceEEEecCCceEEEEECCCC
Confidence 9984 56789999998866543 333331 000111 11234444455555555555444
No 95
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=69.58 E-value=1.4e+02 Score=31.16 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=65.2
Q ss_pred CceEEEEcC-CCcEEEEECCCCeeEEEE---cCCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 84 EPFSVAVSP-SGELLVLDSENNSRPKLV---AGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 84 ~P~GIAVd~-dG~LyVaDs~n~~ii~iv---aGs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
.-.+|.+.| ++|.||+-.... ..++. .|.- ....|+ +. --+.|.+-++|.-|++=+.+...|.||
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~gh-es--------DINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGH-ES--------DINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred cEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeeccc-cc--------ccceEEEccCCCeeeecCCCceeEEEe
Confidence 345677778 899999876444 22222 1211 112232 11 123678888888889888888889888
Q ss_pred --CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 011014 159 --DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 216 (495)
Q Consensus 159 --~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~ 216 (495)
.+- +.++... .....-+.|+ +..+|+|+++-..+..+.+.|.
T Consensus 258 lRaD~~~a~ys~~---------------~~~~gitSv~-FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 258 LRADQELAVYSHD---------------SIICGITSVA-FSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecCCcEEeeeccC---------------cccCCceeEE-EcccccEEEeeecCCceeEeec
Confidence 333 5444321 1122234566 6889999999887777777764
No 96
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.03 E-value=1.5e+02 Score=30.75 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=48.8
Q ss_pred ceEEEEcCCCcEEEEECCCCeeEEEEc---CCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014 85 PFSVAVSPSGELLVLDSENNSRPKLVA---GSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 85 P~GIAVd~dG~LyVaDs~n~~ii~iva---Gs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~ 160 (495)
-.++++.+||+..++-+... .+++.+ |.. ....|+.. --.++|+++|..-+|+-+..+.|..++.-
T Consensus 66 v~dv~~s~dg~~alS~swD~-~lrlWDl~~g~~t~~f~GH~~---------dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDG-TLRLWDLATGESTRRFVGHTK---------DVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred ecceEEccCCceEEeccccc-eEEEEEecCCcEEEEEEecCC---------ceEEEEecCCCceeecCCCcceeeeeeec
Confidence 45778888999888876655 444432 211 11223321 12489999999999999988999999966
Q ss_pred C--cEEEec
Q 011014 161 G--VTTIAG 167 (495)
Q Consensus 161 G--V~tiaG 167 (495)
| ..++..
T Consensus 136 g~ck~t~~~ 144 (315)
T KOG0279|consen 136 GVCKYTIHE 144 (315)
T ss_pred ccEEEEEec
Confidence 6 666644
No 97
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.50 E-value=1.6e+02 Score=30.48 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=18.4
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014 135 GLAVDDRGNIYIADTMNMAIRKISD-TG 161 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N~rIrk~d~-~G 161 (495)
+++++ ++.+||.+. ++.|..+|. +|
T Consensus 100 ~p~v~-~~~v~v~~~-~g~l~ald~~tG 125 (377)
T TIGR03300 100 GVGAD-GGLVFVGTE-KGEVIALDAEDG 125 (377)
T ss_pred ceEEc-CCEEEEEcC-CCEEEEEECCCC
Confidence 45565 678998864 678999995 56
No 98
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.09 E-value=1.8e+02 Score=30.55 Aligned_cols=94 Identities=20% Similarity=0.146 Sum_probs=47.3
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcC-CCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeE
Q 011014 133 PKGLAVDDRGNIYIADTMNMAIRKISD-TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 211 (495)
Q Consensus 133 P~GIAVD~dGnIYVAD~~N~rIrk~d~-~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI 211 (495)
+..++++ +|.|||++. +++|..++. +|.... .... . ....+..| ++ .++.|||.+. ++.|
T Consensus 287 ~~~~~~~-~~~vy~~~~-~g~l~ald~~tG~~~W--~~~~--~-------~~~~~~sp---~v--~~g~l~v~~~-~G~l 347 (394)
T PRK11138 287 VNDFAVD-GGRIYLVDQ-NDRVYALDTRGGVELW--SQSD--L-------LHRLLTAP---VL--YNGYLVVGDS-EGYL 347 (394)
T ss_pred ccCcEEE-CCEEEEEcC-CCeEEEEECCCCcEEE--cccc--c-------CCCcccCC---EE--ECCEEEEEeC-CCEE
Confidence 3344554 678999875 678999984 452221 1000 0 00112233 21 2567887775 4567
Q ss_pred EEEECCCCceee---CCCCCCcceEEEEecCcCeEEEEEc
Q 011014 212 REIQLHDDDCSD---NYDDTFHLGIFVLVAAAFFGYMLAL 248 (495)
Q Consensus 212 ~~~d~~g~~~~~---~~~~g~P~GIAvd~~a~~~~yv~d~ 248 (495)
..+++....... ....+.....++. +..+||...
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~---~~~l~v~t~ 384 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVA---DDKLLIQAR 384 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEE---CCEEEEEeC
Confidence 777775544432 1122232233333 356777754
No 99
>smart00284 OLF Olfactomedin-like domains.
Probab=61.68 E-value=97 Score=31.47 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEcCC-C-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCe--EEEEECCCCe
Q 011014 135 GLAVDDRGNIYIADTMNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS--LLVIDRGNQA 210 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N~rIrk~d~~-G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~--LyVaD~gN~r 210 (495)
|-.|= +|.||.--..+..|.|+|-. + +....-.. + .++.+...-...=..-.++| +|.+|- ||-+...++.
T Consensus 78 G~VVY-ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp-~--a~y~~~~~Y~~~~~sdiDlA-vDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 78 GVVVY-NGSLYFNKFNSHDICRFDLTTETYQKEPLLN-G--AGYNNRFPYAWGGFSDIDLA-VDENGLWVIYATEQNAGK 152 (255)
T ss_pred cEEEE-CceEEEEecCCccEEEEECCCCcEEEEEecC-c--cccccccccccCCCccEEEE-EcCCceEEEEeccCCCCC
Confidence 43343 58899988888999999943 3 32111000 0 11111100000012335777 677763 4444544455
Q ss_pred EE--EEECCCCceeeCCCCCC---cceEEEEecCcCeEEEEEc---cCCceEEEeeC
Q 011014 211 IR--EIQLHDDDCSDNYDDTF---HLGIFVLVAAAFFGYMLAL---LQRRVQAMFSS 259 (495)
Q Consensus 211 I~--~~d~~g~~~~~~~~~g~---P~GIAvd~~a~~~~yv~d~---~~~Rv~~~~~s 259 (495)
|. ++++..-.+...-..+. -.|=|+.. ++.+|+++. ...+|.-.+.+
T Consensus 153 ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt 207 (255)
T smart00284 153 IVISKLNPATLTIENTWITTYNKRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDT 207 (255)
T ss_pred EEEEeeCcccceEEEEEEcCCCcccccccEEE--eeEEEEEccCCCCCcEEEEEEEC
Confidence 54 77766655543222232 24455555 678999986 34566433333
No 100
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=61.30 E-value=2e+02 Score=29.59 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=76.8
Q ss_pred cccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC-cEEEecCcccCCCCCCCCCCcCcccCCCceEEEE---CCCCeEE
Q 011014 128 ARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLL 202 (495)
Q Consensus 128 a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G-V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v---d~~G~Ly 202 (495)
.-+.+...|..+.+|+++|+=+..+.|.+|+ .+| |.=..||+.+. .+.. ....|..-++..+. +.++.|-
T Consensus 141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~--df~~---~~~~f~~QHdar~~~~~~~~~~Is 215 (299)
T PF14269_consen 141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS--DFTL---PATNFSWQHDARFLNESNDDGTIS 215 (299)
T ss_pred CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCC--cccc---cCCcEeeccCCEEeccCCCCCEEE
Confidence 3466778999999999999999999999999 677 43333544221 1111 34456666666654 3667787
Q ss_pred EEEC----------CCCeEEEEECCCCceee----C-CCCCC----cceEEEEecCcCeEEEEEccCCceE
Q 011014 203 VIDR----------GNQAIREIQLHDDDCSD----N-YDDTF----HLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 203 VaD~----------gN~rI~~~d~~g~~~~~----~-~~~g~----P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
|.|- ...+|..+++....+.. . ...++ .-...... .++..|......|+.
T Consensus 216 lFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~--nGn~li~~g~~g~~~ 284 (299)
T PF14269_consen 216 LFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLP--NGNVLIGWGNNGRIS 284 (299)
T ss_pred EEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECC--CCCEEEecCCCceEE
Confidence 8776 45688888888665532 1 11111 12233333 467788888888883
No 101
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=61.25 E-value=46 Score=34.92 Aligned_cols=37 Identities=8% Similarity=0.269 Sum_probs=29.4
Q ss_pred cccCCcceEEEcCCCCEEEEECCCCEEEEEcCC-C-cEEE
Q 011014 128 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT-G-VTTI 165 (495)
Q Consensus 128 a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~-G-V~ti 165 (495)
..|..|++--.. +|+|||+|++.++|.++|.+ | ...+
T Consensus 200 ~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~V 238 (335)
T TIGR03032 200 SGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPV 238 (335)
T ss_pred cCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEE
Confidence 356677776665 78999999999999999976 7 4444
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.46 E-value=2.8e+02 Score=31.85 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=74.6
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
..+|..+.|.|+|+-..++.||.+|... +..+.|-. .+-..|. ++++|+-.++-...+.
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT-----------------dNVr~ll-~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-----------------DNVRVLL-VNDDGTRLLSASSDGT 236 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccc-----------------cceEEEE-EcCCCCeEeecCCCce
Confidence 3788888999999998899999999544 44443321 1223344 6888888888888899
Q ss_pred EEEEECCCCceeeC------------CCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCC
Q 011014 211 IREIQLHDDDCSDN------------YDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDP 263 (495)
Q Consensus 211 I~~~d~~g~~~~~~------------~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~ 263 (495)
|+..++....|... ....|-.= ...+..+++|.+++.+-+-..+++..+-+
T Consensus 237 IrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~v--YsG~rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHV--YSGGRDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred EEeeeccccceeeeEEeccCceEEEeeCCCcceE--EecCCCCcEEecccCCchhheEeecCCCc
Confidence 99999988877531 11122222 22334668999999987666677776653
No 103
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=60.40 E-value=74 Score=30.05 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=37.8
Q ss_pred EEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEE
Q 011014 137 AVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 213 (495)
Q Consensus 137 AVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~ 213 (495)
++..+|.|||++ .++.|..+|. +| +-.+.... .+..+ .+ -.++.|||....+ +|+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~---------------~~~~~--~~--~~~~~v~v~~~~~-~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPG---------------PISGA--PV--VDGGRVYVGTSDG-SLYA 90 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECSS---------------CGGSG--EE--EETTEEEEEETTS-EEEE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeeccc---------------cccce--ee--eccccccccccee-eeEe
Confidence 665688999996 6899999994 77 22222110 01111 12 2455788887544 8888
Q ss_pred EECCCCc
Q 011014 214 IQLHDDD 220 (495)
Q Consensus 214 ~d~~g~~ 220 (495)
++.....
T Consensus 91 ~d~~tG~ 97 (238)
T PF13360_consen 91 LDAKTGK 97 (238)
T ss_dssp EETTTSC
T ss_pred cccCCcc
Confidence 8844433
No 104
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=60.32 E-value=28 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.1
Q ss_pred CCEEEEECCCCEEEEEcCCC
Q 011014 142 GNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 142 GnIYVAD~~N~rIrk~d~~G 161 (495)
+.|||++...+.|.+||...
T Consensus 4 ~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CEEEEEeCCCCEEEEEECCC
Confidence 35999999999999999644
No 105
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=58.82 E-value=1.7e+02 Score=31.90 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=92.4
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEE--EEcCCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc-C
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPK--LVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-D 159 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~--ivaGs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~ 159 (495)
+-..|++.|+|..+.+-+..+.-.. +-.+.- .-.-|+. ..-.+|++..||.|..+-....-=|++| .
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs---------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS---------KGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---------cccceeEecCCCceeeccCccchhheeecc
Confidence 3456778888887777665541111 111110 1122322 2234899999999988866544445556 3
Q ss_pred CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeC--CCCCCcceEEE
Q 011014 160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN--YDDTFHLGIFV 235 (495)
Q Consensus 160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~--~~~g~P~GIAv 235 (495)
.| +-+++|- ...-.+|. .+++|..+.+-...+.+++.|+....+.+. .-...=..+..
T Consensus 334 tgr~im~L~gH-----------------~k~I~~V~-fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 334 TGRCIMFLAGH-----------------IKEILSVA-FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred cCcEEEEeccc-----------------ccceeeEe-ECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 44 5555441 11234566 688899988888889999999888776542 22334566777
Q ss_pred EecCcCeEEEEEccCCceEEEeeCCCCCc
Q 011014 236 LVAAAFFGYMLALLQRRVQAMFSSKDDPR 264 (495)
Q Consensus 236 d~~a~~~~yv~d~~~~Rv~~~~~s~~~~~ 264 (495)
... .+...+++...+-+ ++|.+..-+.
T Consensus 396 ~p~-~g~fL~TasyD~t~-kiWs~~~~~~ 422 (459)
T KOG0272|consen 396 SPQ-EGYFLVTASYDNTV-KIWSTRTWSP 422 (459)
T ss_pred ccc-CCeEEEEcccCcce-eeecCCCccc
Confidence 652 34456777777777 7888776543
No 106
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.19 E-value=4.4e+02 Score=30.66 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=58.3
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCC-ceEEEECCCCeEEEEECCCC
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQ 209 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P-~gVa~vd~~G~LyVaD~gN~ 209 (495)
..+++.++.+...+-+..+.||.+| ..| |..+.|-. .| ..|+ +..+|.-+++-...+
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~------------------~~V~al~-~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK------------------GPVTALA-FSPCGRYLASGDEDG 599 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC------------------CceEEEE-EcCCCceEeecccCC
Confidence 3688888877666666678899998 455 66664421 12 2233 455666666655666
Q ss_pred eEEEEECCCCceee--CCCCCCcceEEEEecCcCeEEEEEccCCceE
Q 011014 210 AIREIQLHDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQ 254 (495)
Q Consensus 210 rI~~~d~~g~~~~~--~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~ 254 (495)
.|...|+.+..... .+..+.-..|.+-. .+.+.+++...+-|+
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~--dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSR--DGNVLASGGADNSVR 644 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEec--CCCEEEecCCCCeEE
Confidence 77777766644321 12233223333332 456788888888884
No 107
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=51.83 E-value=1.8e+02 Score=31.12 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=50.6
Q ss_pred ceEEEcCCCCEEEEECCCCE-EEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014 134 KGLAVDDRGNIYIADTMNMA-IRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 209 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~r-Irk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~ 209 (495)
..||++++|.+.-+-+..+. ||+|. ++| +..+--|. ....=..|+ .+.++.++.+-..+.
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------~~~~IySL~-Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------YPVSIYSLS-FSPDSQFLAASSNTE 240 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------eeeEEEEEE-ECCCCCeEEEecCCC
Confidence 48999999999998887766 56777 777 33331111 011234566 688888988999999
Q ss_pred eEEEEECCCCc
Q 011014 210 AIREIQLHDDD 220 (495)
Q Consensus 210 rI~~~d~~g~~ 220 (495)
.|..|.++...
T Consensus 241 TVHiFKL~~~~ 251 (391)
T KOG2110|consen 241 TVHIFKLEKVS 251 (391)
T ss_pred eEEEEEecccc
Confidence 99999988754
No 108
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=50.78 E-value=79 Score=31.62 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=55.5
Q ss_pred eEEEEcCCCcEEEEECCCCeeEEE---EcCCCCccccccCCCcC-ccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CC
Q 011014 86 FSVAVSPSGELLVLDSENNSRPKL---VAGSPEGYYGHVDGRPR-GARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DT 160 (495)
Q Consensus 86 ~GIAVd~dG~LyVaDs~n~~ii~i---vaGs~~g~~G~~dG~~~-~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~ 160 (495)
..|++++.|-||..+...+ +.+. .+++..-..+ .+... ....+...-|..+++|.||+-+... ++.+.. +.
T Consensus 84 ~~i~~d~~G~LYaV~~~G~-lyR~~~~~~~~~~W~~~--~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg-~~~~~~~p~ 159 (229)
T PF14517_consen 84 KFIFFDPTGVLYAVTPDGK-LYRHPRPTNGSDNWIGG--SGKKIGGTGWNDFDAVFAGPNGVLYAITPDG-RLYRRYRPD 159 (229)
T ss_dssp SEEEE-TTS-EEEEETT-E-EEEES---STT--HHH---HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE--EEEE---S
T ss_pred eEEEecCCccEEEeccccc-eeeccCCCccCcchhhc--cceecccCCCccceEEEeCCCccEEEEcCCC-ceEEeCCCC
Confidence 3899999999999887544 2222 1121110000 01101 1234556789999999999999654 777663 32
Q ss_pred C-------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014 161 G-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 161 G-------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
+ .+++.++. -+..+.-|. ...+|+||.+| .|..|.+..+....|
T Consensus 160 ~~~~~W~~~s~~v~~~---------------gw~~~~~i~-~~~~g~L~~V~-~~G~lyr~~~p~~~~ 210 (229)
T PF14517_consen 160 GGSDRWLSGSGLVGGG---------------GWDSFHFIF-FSPDGNLWAVK-SNGKLYRGRPPQNGC 210 (229)
T ss_dssp STT--HHHH-EEEESS---------------SGGGEEEEE-E-TTS-EEEE--ETTEEEEES---STT
T ss_pred CCCCccccccceeccC---------------CcccceEEe-eCCCCcEEEEe-cCCEEeccCCcccCC
Confidence 2 22332210 122345565 67888999885 568888776655443
No 109
>PRK02939 lipoprotein; Reviewed
Probab=49.05 E-value=2.9e+02 Score=27.76 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred CchhHHHHHHHHHHHHhhccccCCCCCCcceeeceeeeeeeeccceEEEEeCCCCc
Q 011014 1 MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKT 56 (495)
Q Consensus 1 M~r~~l~llllllLll~~~ssa~a~~~P~~iv~~~~~~ia~a~~~~I~~~d~~t~~ 56 (495)
|+|.+++++++++|..|--..+.....|. ++....++-+|+-.+.
T Consensus 1 ~k~~~~~~~~~~~l~gcd~~~~~~~f~P~-----------manfSn~FdFdPlrG~ 45 (236)
T PRK02939 1 MKKKLLLTLLAILLTGCDRTEALESFTPE-----------MASFSNEFDFDPLRGP 45 (236)
T ss_pred CceeehHHHHHHHHhccCCcccccccCHH-----------HhhhhhhcCCCcccCc
Confidence 78888777777777766655666666664 3444555555555444
No 110
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=48.04 E-value=3.2e+02 Score=28.28 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEcCCCc-----EEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcc---eEEEcC-CCCEEEEEC
Q 011014 79 SKFGMEPFSVAVSPSGE-----LLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPK---GLAVDD-RGNIYIADT 149 (495)
Q Consensus 79 ~~~~~~P~GIAVd~dG~-----LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~---GIAVD~-dGnIYVAD~ 149 (495)
+.....|+|++.-.+-. +||++....-...-+...+.|+.+..-- .+|.-|+ |+.+|. .|.|||+.-
T Consensus 149 ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v----R~fk~~tQTEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 149 SSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV----RQFKIPTQTEGMVADDETGFLYIAEE 224 (364)
T ss_pred ccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee----EeeecCCcccceeeccccceEEEeec
Q ss_pred CCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECC-CCeEEEEECCCCeEEEEECCCCc
Q 011014 150 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLHDDD 220 (495)
Q Consensus 150 ~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~-~G~LyVaD~gN~rI~~~d~~g~~ 220 (495)
+-.|+++..+- -+|..|+-.....+......--.-..|.+-+. .|.|..+..+|+.--.+..+|+.
T Consensus 225 -dvaiWK~~Aep----~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~ReG~N 291 (364)
T COG4247 225 -DVAIWKYEAEP----NRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTREGNN 291 (364)
T ss_pred -cceeeecccCC----CCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEeeCCC
No 111
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=45.48 E-value=2.6e+02 Score=26.19 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=54.4
Q ss_pred cCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEEC
Q 011014 130 MNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 206 (495)
Q Consensus 130 f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~ 206 (495)
+..+...+++ .+.+|++.. +..|..+| .+| +-...... . .+......+....+-. +-.++.||++..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~-~------~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 181 (238)
T PF13360_consen 112 VRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGE-P------RGSSPISSFSDINGSP-VISDGRVYVSSG 181 (238)
T ss_dssp TB--SEEEEE-TTEEEEEET-CSEEEEEETTTTEEEEEEESST-T-------SS--EEEETTEEEEE-ECCTTEEEEECC
T ss_pred cccccCceEe-cCEEEEEec-cCcEEEEecCCCcEEEEeecCC-C------CCCcceeeecccccce-EEECCEEEEEcC
Confidence 4455566666 445777765 88999999 667 33332211 0 0000000111222222 223558888886
Q ss_pred CCCeEEEEECCCCceeeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 207 GNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 207 gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
.+. +..++............+...++.. ..+..+|+++ ...+|
T Consensus 182 ~g~-~~~~d~~tg~~~w~~~~~~~~~~~~--~~~~~l~~~~-~~~~l 224 (238)
T PF13360_consen 182 DGR-VVAVDLATGEKLWSKPISGIYSLPS--VDGGTLYVTS-SDGRL 224 (238)
T ss_dssp TSS-EEEEETTTTEEEEEECSS-ECECEE--CCCTEEEEEE-TTTEE
T ss_pred CCe-EEEEECCCCCEEEEecCCCccCCce--eeCCEEEEEe-CCCEE
Confidence 654 5555888876443222222233122 2356778777 55666
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=45.29 E-value=2.8e+02 Score=30.46 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=44.5
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
+..++.+||.||.+-+.+..|+.+| +++ +..+-| - .|+. ..|. +..+|.-+++......
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg-h--------t~~v--------k~i~-FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-H--------TGPV--------KAIS-FSENGYWLATAADDGS 412 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC-C--------CCce--------eEEE-eccCceEEEEEecCCe
Confidence 4678999999999999999999999 333 333311 1 1111 2344 5677777776666666
Q ss_pred EEEEECCC
Q 011014 211 IREIQLHD 218 (495)
Q Consensus 211 I~~~d~~g 218 (495)
|+.+|+..
T Consensus 413 V~lwDLRK 420 (506)
T KOG0289|consen 413 VKLWDLRK 420 (506)
T ss_pred EEEEEehh
Confidence 77777655
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=43.40 E-value=3.3e+02 Score=32.40 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=30.0
Q ss_pred ccccCCcc-eEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEec
Q 011014 127 GARMNHPK-GLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAG 167 (495)
Q Consensus 127 ~a~f~~P~-GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaG 167 (495)
-++|..|. .++|+.+|+..++-+..-.|..++ .++ ++++-|
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 35777776 899999999999887777888877 333 455533
No 114
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=42.70 E-value=1.8e+02 Score=24.92 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=32.8
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeE
Q 011014 133 PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 211 (495)
Q Consensus 133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI 211 (495)
+.-+.++++|+|++.|..+..|..=+.. . + ..+.. +.+.++|+|.+.|..+..|
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~---~---------------~~~~~-~~L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT------G---A---------------NGNYV-LVLLDDGNLVIYDSDGNFL 108 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc------C---C---------------CCceE-EEEeCCCCEEEECCCCCEE
Confidence 4578888999999998765444321111 0 0 01222 3468889998888755433
No 115
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=42.64 E-value=3.2e+02 Score=28.36 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=78.4
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeE
Q 011014 135 GLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 211 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI 211 (495)
-|-.+.+|+|.++=...+.+-++- .|| +-|.-|-. | .-+.+. +|.+-...|+-...+.+
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt-G----------------avW~~D-id~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT-G----------------AVWCCD-IDWDSKHLITGSADQTA 76 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC-c----------------eEEEEE-ecCCcceeeecccccee
Confidence 566677888777655444444433 355 44443311 0 123444 56666778888888888
Q ss_pred EEEECCCCceeeCCCCCCc-ceEEEEecCcCeEEEEEc--cCCceEEEeeCCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 011014 212 REIQLHDDDCSDNYDDTFH-LGIFVLVAAAFFGYMLAL--LQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSARPPL 288 (495)
Q Consensus 212 ~~~d~~g~~~~~~~~~g~P-~GIAvd~~a~~~~yv~d~--~~~Rv~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (495)
+..|.....+...-..+.| .++.++.++...++++|- .+.-.. .+|...+++ +.+..+.||-+
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v-~~fdi~~~~----~~~~s~ep~~k--------- 142 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFV-SVFDIRDDS----SDIDSEEPYLK--------- 142 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEE-EEEEccCCh----hhhcccCceEE---------
Confidence 8888777666554444443 556666644555555552 222222 344444332 23333344433
Q ss_pred ccCCCCCCCCccCccchhhhhhh
Q 011014 289 VPTEDDFEKPEEGFFGSIGRLVL 311 (495)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (495)
||.- | .|-.-..|+.+|+.|+
T Consensus 143 I~t~-~-skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 143 IPTP-D-SKITSALWGPLGETII 163 (327)
T ss_pred ecCC-c-cceeeeeecccCCEEE
Confidence 2221 2 5666778999999865
No 116
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.61 E-value=1.5e+02 Score=34.25 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
..|++.+.|.-.++=...+.|..+| .+| +..+.|- .+ .-..|. +..+|+++|++..++.
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~----------------ti~Sls-FS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TG----------------TIYSLS-FSRDGNVLASGGADNS 642 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cC----------------ceeEEE-EecCCCEEEecCCCCe
Confidence 4888889888777766678888888 444 4444332 11 123455 5789999999999999
Q ss_pred EEEEECCCCce
Q 011014 211 IREIQLHDDDC 221 (495)
Q Consensus 211 I~~~d~~g~~~ 221 (495)
|+..|......
T Consensus 643 V~lWD~~~~~~ 653 (707)
T KOG0263|consen 643 VRLWDLTKVIE 653 (707)
T ss_pred EEEEEchhhcc
Confidence 99998765443
No 117
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=41.27 E-value=2.9e+02 Score=32.06 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=67.9
Q ss_pred EEEcCCCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC--c
Q 011014 88 VAVSPSGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--V 162 (495)
Q Consensus 88 IAVd~dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V 162 (495)
++++++|.++++-.++- ++.+.. |+..-.++ ....+..-..+++++|++..++-..+.-+++++ +.| +
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~s~------~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVATGSIALPSG------SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLI 97 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccCCceecccC------CccchhhhheeeecCCccEEEEeeccceEEEEEcccchHh
Confidence 78999999888877664 443332 22211111 122455667999999998777777788888888 555 3
Q ss_pred EEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014 163 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 222 (495)
Q Consensus 163 ~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~ 222 (495)
..... .=..|.-+..+++.+.|+-+-.--++|++.|..+..|.
T Consensus 98 rswKa-----------------~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 98 RSWKA-----------------IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred HhHhh-----------------ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 22211 01235544446666655544445577778887777775
No 118
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=41.06 E-value=4.3e+02 Score=27.40 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=45.3
Q ss_pred EEcCCCCEEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEEC
Q 011014 137 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 216 (495)
Q Consensus 137 AVD~dGnIYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~ 216 (495)
.++.+|.+||. ..+++|.-+|.++...+ +...- .+ ....++.|..+. +|.|||.+... .+..++.
T Consensus 64 ~~~~dg~v~~~-~~~G~i~A~d~~~g~~~-W~~~~--~~------~~~~~~~~~~~~----~G~i~~g~~~g-~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVG-TRDGNIFALNPDTGLVK-WSYPL--LG------AVAQLSGPILGS----DGKIYVGSWDG-KLYALDA 128 (370)
T ss_pred cEeeCCeEEEe-cCCCcEEEEeCCCCcEE-ecccC--cC------cceeccCceEEe----CCeEEEecccc-eEEEEEC
Confidence 57779999998 44668999997763322 11000 00 123445554332 78899999765 8999999
Q ss_pred -CCCceee
Q 011014 217 -HDDDCSD 223 (495)
Q Consensus 217 -~g~~~~~ 223 (495)
+|..+-.
T Consensus 129 ~~G~~~W~ 136 (370)
T COG1520 129 STGTLVWS 136 (370)
T ss_pred CCCcEEEE
Confidence 6766543
No 119
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.84 E-value=1.3e+02 Score=32.20 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=49.7
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcC-CCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAG-SPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD 159 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaG-s~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~ 159 (495)
.-..||++++|.++.+-+....+|+++.- ++....-+.-|. ...+-..|++++++.+..|-+.+..|.+|.-
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----YPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----eeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 34678999999999999999989988752 211111121221 1233458999999998888887777777763
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.59 E-value=4.7e+02 Score=28.92 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred eeeeccceEEEEeCCCCceecCCceeEecCCceEEEeecCCCCCCCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccc
Q 011014 39 VVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYY 118 (495)
Q Consensus 39 ia~a~~~~I~~~d~~t~~~vaG~~i~~~~~G~~~~~~~~G~~~~~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~ 118 (495)
+++.+.++||.++......+ .++.+...+ +-+.++.+.+|. |+|-..+.+++-|..+......
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~-----~rf~D~G~v-----------~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCL-----HRFVDDGSV-----------HGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred EEEcCCceEEEEecCCcceE-----EEEeecCcc-----------ceeeeeecCCCc-eEEeccCcceEEEeccchhhcc
Q ss_pred cccCCCcCccccCCcc-eEEEcCCCC--EEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEE
Q 011014 119 GHVDGRPRGARMNHPK-GLAVDDRGN--IYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV 195 (495)
Q Consensus 119 G~~dG~~~~a~f~~P~-GIAVD~dGn--IYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~v 195 (495)
+...-...-..|..-- .|++.+++. -.++....+.++.+----.+++ .+-|.....+..++++++.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-----------sNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-----------SNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-----------ccCCCCCCcccceEEEEec
Q ss_pred CCCCeEEEEECCCCeEEEEECC
Q 011014 196 GSSCSLLVIDRGNQAIREIQLH 217 (495)
Q Consensus 196 d~~G~LyVaD~gN~rI~~~d~~ 217 (495)
+..|.+-|.... +||..|.++
T Consensus 492 P~sG~lAvGNe~-grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEA-GRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCC-CceeeEeec
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=39.36 E-value=3.1e+02 Score=29.09 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=50.8
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEE
Q 011014 133 PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 212 (495)
Q Consensus 133 P~GIAVD~dGnIYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~ 212 (495)
-++|++.+||.-+++=.+.+.|+.++.+-...-.-. + ......+..|+-|++.++...+.|+-...+.|+
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr-----~-----~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR-----C-----IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh-----H-----hhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 459999999998888888888999984431000000 0 011223458899996666667777777888888
Q ss_pred EEECCC
Q 011014 213 EIQLHD 218 (495)
Q Consensus 213 ~~d~~g 218 (495)
+|.+..
T Consensus 159 vyk~~K 164 (420)
T KOG2096|consen 159 VYKLVK 164 (420)
T ss_pred EEEeee
Confidence 887654
No 122
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.35 E-value=3e+02 Score=30.79 Aligned_cols=68 Identities=7% Similarity=0.181 Sum_probs=50.8
Q ss_pred ceEEEcCC-CCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014 134 KGLAVDDR-GNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 209 (495)
Q Consensus 134 ~GIAVD~d-GnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~ 209 (495)
.||++.+. ..|+|+=....+|..||..- +.+++ ...|..-+....+|.++++-..++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------------------y~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------------------YSHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceee-------------------ecCCcceeeecCCceEEEeecCCc
Confidence 49999984 45888888899999999543 33332 234554344788999999999999
Q ss_pred eEEEEECCCCc
Q 011014 210 AIREIQLHDDD 220 (495)
Q Consensus 210 rI~~~d~~g~~ 220 (495)
+|..+|+.+..
T Consensus 273 ~~i~YD~R~~k 283 (673)
T KOG4378|consen 273 ELIAYDMRSTK 283 (673)
T ss_pred eEEEEecccCC
Confidence 99999987744
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=38.48 E-value=4.9e+02 Score=30.71 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=55.8
Q ss_pred ccCCcc-eEEEcCCCCEEEEECCCCEEEEEcC-CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEE
Q 011014 129 RMNHPK-GLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 204 (495)
Q Consensus 129 ~f~~P~-GIAVD~dGnIYVAD~~N~rIrk~d~-~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVa 204 (495)
+|..|- ++.+.+|+++|-.=...+.|..+.. +- ..+|.|-..-. +.+ ....-..+++++ +|+.-+..|.
T Consensus 290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~-~~~-----k~~~~~l~t~~~-idpr~~~~vl 362 (792)
T KOG1963|consen 290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT-PST-----KTRPQSLTTGVS-IDPRTNSLVL 362 (792)
T ss_pred ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC-ccc-----cccccccceeEE-EcCCCCceee
Confidence 455554 9999999998887777888888884 33 56665533211 000 011123466777 5776677778
Q ss_pred ECCCCeEEEEECCCCc
Q 011014 205 DRGNQAIREIQLHDDD 220 (495)
Q Consensus 205 D~gN~rI~~~d~~g~~ 220 (495)
...+++|+.|++-.+.
T Consensus 363 n~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDS 378 (792)
T ss_pred cCCCceEEEEeccccc
Confidence 8888889888876644
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.28 E-value=4.9e+02 Score=27.28 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=75.7
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014 135 GLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214 (495)
Q Consensus 135 GIAVD~dGnIYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~ 214 (495)
+|.....-+..|+-.+..+|..+|...- ...| .+..+..|-..+..|+.+|.-..+.+|..+
T Consensus 99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~-----------------~~d~~kkVy~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVG-----------------TFDQGKKVYCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred EEEeeccCCeEEEcccCccEEEEecccc-cccc-----------------ccccCceEEEEeccCCEEEEeecCceEEEE
Confidence 5555555678888888999999997651 1111 233444555678888888888888999999
Q ss_pred ECCCCceee-CCCCCC---cceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014 215 QLHDDDCSD-NYDDTF---HLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD 261 (495)
Q Consensus 215 d~~g~~~~~-~~~~g~---P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~ 261 (495)
|+..-.... ...+++ -+.|++.. .+-+|++...-.||-.-+|+..
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~p--n~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVP--NGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEec--CCCceEEEeecceEEEEccCCc
Confidence 987754433 223333 57888887 6778999999999977677665
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=38.23 E-value=6.9e+02 Score=28.97 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=40.3
Q ss_pred ceEEEcC-CCCEEEEECCCCEEEEEcCC-C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014 134 KGLAVDD-RGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 209 (495)
Q Consensus 134 ~GIAVD~-dGnIYVAD~~N~rIrk~d~~-G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~ 209 (495)
.+|++++ +|+++++=...+.|+.+|-. + +.++... .....+.+...+|.++++-..++
T Consensus 579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~------------------~~v~~v~~~~~~g~~latgs~dg 640 (793)
T PLN00181 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK------------------ANICCVQFPSESGRSLAFGSADH 640 (793)
T ss_pred EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC------------------CCeEEEEEeCCCCCEEEEEeCCC
Confidence 4888885 78888887778899999943 3 3333210 01123332244566666666666
Q ss_pred eEEEEECCC
Q 011014 210 AIREIQLHD 218 (495)
Q Consensus 210 rI~~~d~~g 218 (495)
.|+.++...
T Consensus 641 ~I~iwD~~~ 649 (793)
T PLN00181 641 KVYYYDLRN 649 (793)
T ss_pred eEEEEECCC
Confidence 777777654
No 126
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=37.69 E-value=2.6e+02 Score=23.94 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=34.3
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 152 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~ 152 (495)
.+..+.++.+|+|++.|..+. .+ ...+.. + + ..+..+.+.++|+|.+-|..+.
T Consensus 54 ~~~~l~l~~dGnLvl~~~~g~-~v-W~S~t~----~---~-------~~~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 54 DSCTLTLQSDGNLVLYDGDGR-VV-WSSNTT----G---A-------NGNYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred CCEEEEEeCCCCEEEEeCCCC-EE-EEeccc----C---C-------CCceEEEEeCCCCEEEECCCCC
Confidence 346788889999999987654 22 211111 0 0 2345778889999998886443
No 127
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.65 E-value=4.3e+02 Score=27.25 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=18.9
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcC-CC
Q 011014 133 PKGLAVDDRGNIYIADTMNMAIRKISD-TG 161 (495)
Q Consensus 133 P~GIAVD~dGnIYVAD~~N~rIrk~d~-~G 161 (495)
....+++ ++.|||++ .+++|..+|. +|
T Consensus 272 ~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 272 YQGPAVD-DNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred ccCceEe-CCEEEEEC-CCCeEEEEECCCC
Confidence 3344554 57899987 4788999995 55
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=37.14 E-value=5.1e+02 Score=27.50 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=65.5
Q ss_pred eEEEEcCCCcEEEEECCCCeeEEE--EcCCCCccccccCCCcCccccCCcc-eEEEcC-CCCEEEEECCCCEEEEEc-CC
Q 011014 86 FSVAVSPSGELLVLDSENNSRPKL--VAGSPEGYYGHVDGRPRGARMNHPK-GLAVDD-RGNIYIADTMNMAIRKIS-DT 160 (495)
Q Consensus 86 ~GIAVd~dG~LyVaDs~n~~ii~i--vaGs~~g~~G~~dG~~~~a~f~~P~-GIAVD~-dGnIYVAD~~N~rIrk~d-~~ 160 (495)
..|+.+++|..+++.+..+.+... .+|+. ....+|+.|. +.-..+ +-|..|+-..+..-.+++ .+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCc----------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 678999999999988877734332 23332 1234666665 444444 556666654443333333 23
Q ss_pred CcEEEecCcccCCCCCCCCCCcCcccC-CCceEEEECCCCeEEEEECCCCeEEEEECCCCcee
Q 011014 161 GVTTIAGGKWSRGVGHVDGPSEDAKFS-NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 222 (495)
Q Consensus 161 GV~tiaGg~~G~~~g~~dG~~~~a~f~-~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~ 222 (495)
++.++... .++| .++ .+.... .++.|...++-+.-+.+.+++.++..|.
T Consensus 139 ~~h~~Lp~-------d~d~-----dln~sas~~~-fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 139 PKHSVLPK-------DDDG-----DLNSSASHGV-FDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred CceeeccC-------CCcc-----cccccccccc-ccCCCCEEEEecCcceEEEEecchheee
Confidence 43333211 0111 111 222233 5888888888888899999998887775
No 129
>PTZ00421 coronin; Provisional
Probab=36.69 E-value=6.2e+02 Score=27.98 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=63.6
Q ss_pred ceEEEEcC-CCcEEEEECCCCeeEEEEcCCCCccccccCCCc--CccccCCcceEEEcCCC-CEEEEECCCCEEEEEcC-
Q 011014 85 PFSVAVSP-SGELLVLDSENNSRPKLVAGSPEGYYGHVDGRP--RGARMNHPKGLAVDDRG-NIYIADTMNMAIRKISD- 159 (495)
Q Consensus 85 P~GIAVd~-dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~--~~a~f~~P~GIAVD~dG-nIYVAD~~N~rIrk~d~- 159 (495)
-.+|++++ +++++++-+... .+++..-...+......... ....-..-..|++.+++ +++++=...+.|+.+|-
T Consensus 78 V~~v~fsP~d~~~LaSgS~Dg-tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDG-TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCC-EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 46888888 777777666555 55554321101000000000 00011223478888865 67777667888999994
Q ss_pred CC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014 160 TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 160 ~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
.+ +.++.+.. ..-.+|+ ...+|.++++-..++.|+.+|+....+
T Consensus 157 tg~~~~~l~~h~-----------------~~V~sla-~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 157 RGKAVEVIKCHS-----------------DQITSLE-WNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCeEEEEEcCCC-----------------CceEEEE-EECCCCEEEEecCCCEEEEEECCCCcE
Confidence 34 33332110 0123455 355677777777777888888765443
No 130
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.82 E-value=3.7e+02 Score=29.04 Aligned_cols=107 Identities=7% Similarity=-0.105 Sum_probs=66.0
Q ss_pred ceEEEcCC--CCEEEEECCCCEEEEEcCCC----cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECC
Q 011014 134 KGLAVDDR--GNIYIADTMNMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG 207 (495)
Q Consensus 134 ~GIAVD~d--GnIYVAD~~N~rIrk~d~~G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~g 207 (495)
.+|.+-+. -+-+++=+.-|.||.||+.- |..+.....+ =..+..+.+...||++|..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----------------is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP-----------------ISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-----------------ceeeeecCCCcEEEEeccc
Confidence 36666554 56888888889999999543 5555332211 1234434555568888864
Q ss_pred CCeEEEEECCCCce---eeCCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCC
Q 011014 208 NQAIREIQLHDDDC---SDNYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKD 261 (495)
Q Consensus 208 N~rI~~~d~~g~~~---~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~ 261 (495)
..+..||..+... ...+..|.+.+|-... ..- +++.+.-.|...++-.+.
T Consensus 269 -g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp--~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 269 -GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP--THP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred -chhheecccCceeeccccCCccCCcceEEEcC--CCc-eEEeeccceeEEEeeccc
Confidence 6788999888653 4567777888888775 222 444444455545554444
No 131
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.49 E-value=5.7e+02 Score=27.20 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=17.8
Q ss_pred ceEEEcCCCC--EEEEECC-CCEEEEEcCCC
Q 011014 134 KGLAVDDRGN--IYIADTM-NMAIRKISDTG 161 (495)
Q Consensus 134 ~GIAVD~dGn--IYVAD~~-N~rIrk~d~~G 161 (495)
...+++++|. +|++|.. +..|.+++.++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3568888887 4455543 45688888443
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=35.27 E-value=3.8e+02 Score=30.12 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=69.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccC--CcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMN--HPKGLAVDDRGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~--~P~GIAVD~dGnIYVAD~~N~rIrk~d~~ 160 (495)
.|..-++++||.++.+-..+. -|++.. |+..-.. .-....|... .-+.|++..+|++..+-...+.++++|-.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p---~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRP---VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CceeeecCCCcchhhhcccCC-ceeeeecCCccccc---ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 577778899999966655555 455543 4321000 0001112222 45699999999999999988888888832
Q ss_pred C----cEEEecCcccCCCCCCCCCCcCcccCCCce-EEEE-------CCCCeEEEEECCC-CeEEEEECCCCce
Q 011014 161 G----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFD-VVYV-------GSSCSLLVIDRGN-QAIREIQLHDDDC 221 (495)
Q Consensus 161 G----V~tiaGg~~G~~~g~~dG~~~~a~f~~P~g-Va~v-------d~~G~LyVaD~gN-~rI~~~d~~g~~~ 221 (495)
. +.+..|...-. +..+..| .|.. |++. ...|.|||.|+.. ..|++|+..+-.|
T Consensus 395 q~kkpL~~~tgL~t~~-------~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPF-------PGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred ccccchhhhcCCCccC-------CCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 2 44433322211 0112223 2222 2211 2345788888744 5677777765544
No 133
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=35.22 E-value=92 Score=33.18 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=60.5
Q ss_pred EcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEE
Q 011014 138 VDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 214 (495)
Q Consensus 138 VD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~ 214 (495)
||-+..++|+-++...|++.+.+. |.++.|-. .|||..--.|.+.|+-...+.|+.+
T Consensus 326 Vdfd~kyIVsASgDRTikvW~~st~efvRtl~gHk--------------------RGIAClQYr~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 326 VDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------------------RGIACLQYRDRLVVSGSSDNTIRLW 385 (499)
T ss_pred eccccceEEEecCCceEEEEeccceeeehhhhccc--------------------ccceehhccCeEEEecCCCceEEEE
Confidence 444566888888889999999544 77776533 3455556688999999999999999
Q ss_pred ECCCCceee--CCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 215 QLHDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 215 d~~g~~~~~--~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
+.+.+.|.. .+--.+-.-|-+|. .-.|.......|
T Consensus 386 di~~G~cLRvLeGHEeLvRciRFd~----krIVSGaYDGki 422 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEELVRCIRFDN----KRIVSGAYDGKI 422 (499)
T ss_pred eccccHHHHHHhchHHhhhheeecC----ceeeeccccceE
Confidence 998877753 22222344555553 123444444455
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=34.89 E-value=6.9e+02 Score=27.99 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=36.9
Q ss_pred EEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcc------------eEEEcCCCCEEEEECCCCEE
Q 011014 87 SVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPK------------GLAVDDRGNIYIADTMNMAI 154 (495)
Q Consensus 87 GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~------------GIAVD~dGnIYVAD~~N~rI 154 (495)
-|.+...|.||+-|..+.++-++--|-+.. -.....+|..|. -||+-+.|..||-+.+.+-+
T Consensus 280 rIvFq~~GdIylydP~td~lekldI~lpl~------rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLDIGLPLD------RKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeeecCCccc------cccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 466666778888887777554443332110 001112233332 45555677777777766666
Q ss_pred EEEcCCC
Q 011014 155 RKISDTG 161 (495)
Q Consensus 155 rk~d~~G 161 (495)
..+...|
T Consensus 354 iqv~~~~ 360 (668)
T COG4946 354 IQVGKKG 360 (668)
T ss_pred EEcCCCC
Confidence 6665444
No 135
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=34.39 E-value=2.3e+02 Score=24.46 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=33.4
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEcCCCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeE
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 211 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI 211 (495)
.+.-+.++.+|+|++.|..+..|..=+..+ ......+.+.++|+|.+-|..+..|
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW~S~~~~-------------------------~~~~~~~~L~ddGnlvl~~~~~~~~ 109 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVWSSNTTR-------------------------VNGNYVLVLLDDGNLVLYDSDGNFL 109 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEEEecccC-------------------------CCCceEEEEeCCCCEEEECCCCCEE
Confidence 455788889999999987554433211110 0111233468889998888765444
Q ss_pred E
Q 011014 212 R 212 (495)
Q Consensus 212 ~ 212 (495)
+
T Consensus 110 W 110 (116)
T cd00028 110 W 110 (116)
T ss_pred E
Confidence 3
No 136
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.04 E-value=6.4e+02 Score=29.14 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=75.3
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG- 161 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G- 161 (495)
.+|..++.+|+|...++-.+..-++....+=....+| .-...+...+-+.|+.-..|+.|..+ +++
T Consensus 352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG------------~~~eFvw~~dsne~avRes~~~vki~-knfk 418 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFG------------SGLEFVWAADSNEFAVRESNGNVKIF-KNFK 418 (794)
T ss_pred cchHHhccCCCCcEEEEecCccEEEEEeeehhhcccc------------cceeEEEcCCCCeEEEEecCCceEEE-ecce
Confidence 6788889999888766655444333321111111111 12234455565677666556777777 555
Q ss_pred -cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCC-CeEEEEECCCCceeeCCCCCCcceEEEEecC
Q 011014 162 -VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN-QAIREIQLHDDDCSDNYDDTFHLGIFVLVAA 239 (495)
Q Consensus 162 -V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN-~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a 239 (495)
...+.-. . ....+..+.=+. +..++.|.+-|+.+ ..|++|+...+.+.. ...|.-..||-|.
T Consensus 419 e~ksi~~~----------~--~~e~i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~v~~k~v~w-~d~g~lVai~~d~-- 482 (794)
T KOG0276|consen 419 EHKSIRPD----------M--SAEGIFGGPLLG-VRSSDFLCFYDWESGELVRRIEVTSKHVYW-SDNGELVAIAGDD-- 482 (794)
T ss_pred eccccccc----------c--ceeeecCCceEE-EEeCCeEEEEEcccceEEEEEeeccceeEE-ecCCCEEEEEecC--
Confidence 2222110 0 012344455555 56788999999655 567889877766543 3444445555553
Q ss_pred cCeEEEEEccCCce
Q 011014 240 AFFGYMLALLQRRV 253 (495)
Q Consensus 240 ~~~~yv~d~~~~Rv 253 (495)
..|+.-....-|
T Consensus 483 --Sfyil~~n~d~v 494 (794)
T KOG0276|consen 483 --SFYILKFNADAV 494 (794)
T ss_pred --ceeEEEecHHHH
Confidence 235555444334
No 137
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=33.41 E-value=6.6e+02 Score=27.33 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=82.7
Q ss_pred ceEEEEcCCCcEEEEECCCCeeEEEEcC---CC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014 85 PFSVAVSPSGELLVLDSENNSRPKLVAG---SP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 85 P~GIAVd~dG~LyVaDs~n~~ii~ivaG---s~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~ 160 (495)
-..+++.|+|..+++.++.. .+++.+- ++ ....|+. +=-..|+..+||..+.+-..++.|+.+|+.
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~-TvR~WD~~TeTp~~t~KgH~---------~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDT-TVRLWDLDTETPLFTCKGHK---------NWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred EEEEEecCCCceEEecCCCc-eEEeeccCCCCcceeecCCc---------cEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35677888998888888777 4444321 11 1122221 122388999999999999999999999943
Q ss_pred -C---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceeeCCCCCCcceE-EE
Q 011014 161 -G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGI-FV 235 (495)
Q Consensus 161 -G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GI-Av 235 (495)
| ...+.|-...- .+ ---.|..+ ++.+.++.+-...+.|++.+.....|... -.|....| |+
T Consensus 188 tg~~~g~~l~gH~K~I-----t~-----Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~~-lsgHT~~VTCv 253 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWI-----TA-----LAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVRT-LSGHTASVTCV 253 (480)
T ss_pred CCCcccccccCcccce-----eE-----Eeeccccc---CCCccceecccCCCCEEEEEccCceEEEE-eccCccceEEE
Confidence 3 23333321110 00 00123222 24445566666667777777777666532 12222223 33
Q ss_pred EecCcCeEEEEEccCCceEEEeeCCCC
Q 011014 236 LVAAAFFGYMLALLQRRVQAMFSSKDD 262 (495)
Q Consensus 236 d~~a~~~~yv~d~~~~Rv~~~~~s~~~ 262 (495)
--|+.+ |+....+.|--+++...++
T Consensus 254 rwGG~g--liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 254 RWGGEG--LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred EEcCCc--eEEecCCCceEEEEEccch
Confidence 333333 3333444444478877663
No 138
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.95 E-value=8.8e+02 Score=28.63 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=57.0
Q ss_pred ccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEE
Q 011014 127 GARMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV 203 (495)
Q Consensus 127 ~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyV 203 (495)
.+.+..-..+++.+||.+.++-...++|+++| ..| +-|+.--. +.-+++. +...|+..+
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt-----------------s~Vt~v~-f~~~g~~ll 408 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT-----------------SGVTAVQ-FTARGNVLL 408 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC-----------------CceEEEE-EEecCCEEE
Confidence 34577788999999999999999899999999 455 44442111 1224455 567889999
Q ss_pred EECCCCeEEEEECCCCce
Q 011014 204 IDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 204 aD~gN~rI~~~d~~g~~~ 221 (495)
+-.-.++|+.+|+.-..+
T Consensus 409 ssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred EeecCCeEEeeeecccce
Confidence 988889999999876444
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=32.70 E-value=1.8e+02 Score=33.82 Aligned_cols=74 Identities=18% Similarity=0.348 Sum_probs=50.9
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d-~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
.+|+||++-.+.++-.....|++|+ .+| +.++.|... .+| .+..|. .|++|.-+++...+..
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~------~eG--------~lIKv~-lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD------HEG--------DLIKVI-LDPSGIYLATSCSDKT 664 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc------CCC--------ceEEEE-ECCCccEEEEeecCCc
Confidence 3899999888777777778899999 566 666655211 112 344455 5777766666677778
Q ss_pred EEEEECCCCcee
Q 011014 211 IREIQLHDDDCS 222 (495)
Q Consensus 211 I~~~d~~g~~~~ 222 (495)
|-.+|--.++|.
T Consensus 665 l~~~Df~sgEcv 676 (1080)
T KOG1408|consen 665 LCFVDFVSGECV 676 (1080)
T ss_pred eEEEEeccchhh
Confidence 888888777775
No 140
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=32.44 E-value=7.4e+02 Score=27.99 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=45.4
Q ss_pred eEEEEcCCCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014 86 FSVAVSPSGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 86 ~GIAVd~dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G 161 (495)
..+++|+.|--+|+.+... -++++. |-.....-+ -....+.-..-..+.+..+|+.+++=+++..++++|.+|
T Consensus 171 sal~~Dp~GaR~~sGs~Dy-~v~~wDf~gMdas~~~f--r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDY-TVKFWDFQGMDASMRSF--RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEeeecCCCceeeeccccc-eEEEEecccccccchhh--hccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 4678899998888876655 445443 321100000 001111112234788888999888888999999999999
No 141
>PTZ00421 coronin; Provisional
Probab=32.19 E-value=7.3e+02 Score=27.44 Aligned_cols=70 Identities=10% Similarity=0.054 Sum_probs=41.0
Q ss_pred ceEEEEcCCC-cEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCC
Q 011014 85 PFSVAVSPSG-ELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 85 P~GIAVd~dG-~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~ 160 (495)
-..|++.+++ +++++-+... .+++..-..........+ .-..-.+|++.++|+++++=..++.|+.+|..
T Consensus 128 V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~~~~~l~~-----h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADM-VVNVWDVERGKAVEVIKC-----HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCeEEEEEcC-----CCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 4567888764 5666554444 455543211000000000 11124588999999999888889999999943
No 142
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=32.13 E-value=64 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.0
Q ss_pred CceEEEEcCCCcEEEEEC
Q 011014 84 EPFSVAVSPSGELLVLDS 101 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs 101 (495)
.-..|..|++|+|||.-.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 557899999999999753
No 143
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=31.46 E-value=1.2e+02 Score=30.31 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=39.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
...-|..+++|-||+.+.+. +..+... +.. .......+......+..+.-|...++|+||.+|. +..|.+..
T Consensus 131 ~f~~vfa~~~GvLY~i~~dg-~~~~~~~p~~~~-~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~-~G~lyr~~ 204 (229)
T PF14517_consen 131 DFDAVFAGPNGVLYAITPDG-RLYRRYRPDGGS-DRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS-NGKLYRGR 204 (229)
T ss_dssp GEEEEEE-TTS-EEEEETTE--EEEE---SSTT---HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E-TTEEEEES
T ss_pred cceEEEeCCCccEEEEcCCC-ceEEeCCCCCCC-CccccccceeccCCcccceEEeeCCCCcEEEEec-CCEEeccC
Confidence 46778889999999999655 2444422 111 1111111111123455688999999999999965 78888776
No 144
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=31.07 E-value=2.7e+02 Score=23.95 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=34.0
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCE
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 153 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~r 153 (495)
.+..+.+..+|+|++.|..+. .+ .-.+.. + -..+..+.+.++|++.+-|..+.-
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~-~v-W~S~~~-~-------------~~~~~~~~L~ddGnlvl~~~~~~~ 108 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGT-VV-WSSNTT-R-------------VNGNYVLVLLDDGNLVLYDSDGNF 108 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCc-EE-EEeccc-C-------------CCCceEEEEeCCCCEEEECCCCCE
Confidence 566788888999999987554 22 211111 0 013456678889998888764433
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=30.89 E-value=2.6e+02 Score=32.66 Aligned_cols=76 Identities=21% Similarity=0.436 Sum_probs=37.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEc---CCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEEC-CCCEEEEEc
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVA---GSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT-MNMAIRKIS 158 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~iva---Gs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~-~N~rIrk~d 158 (495)
.-++|+|||+-.+.++-... +.++++. |.. ....|..+ .=..+.-|..|+.| ||||-+ .+..+-.||
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD-rnirif~i~sgKq~k~FKgs~~------~eG~lIKv~lDPSg-iY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD-RNIRIFDIESGKQVKSFKGSRD------HEGDLIKVILDPSG-IYLATSCSDKTLCFVD 669 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc-cceEEEeccccceeeeeccccc------CCCceEEEEECCCc-cEEEEeecCCceEEEE
Confidence 45789999865544443222 2344443 211 11122111 11245578888887 555544 455666666
Q ss_pred -CCC--cEEEec
Q 011014 159 -DTG--VTTIAG 167 (495)
Q Consensus 159 -~~G--V~tiaG 167 (495)
-.| +.+..|
T Consensus 670 f~sgEcvA~m~G 681 (1080)
T KOG1408|consen 670 FVSGECVAQMTG 681 (1080)
T ss_pred eccchhhhhhcC
Confidence 333 555433
No 146
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=30.79 E-value=5.4e+02 Score=28.05 Aligned_cols=192 Identities=14% Similarity=0.083 Sum_probs=89.7
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCC
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 209 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~ 209 (495)
.-..|-+..+|...|+-....+++++.-+. +..+ ..+-+ .-....-++-.+++ .+.....+++-..-.
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~--------~~~~~H~SNIF~L~-F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIG--------VMEHPHRSNIFSLE-FDLENRFLYSGERWG 127 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCce--------eccCccccceEEEE-EccCCeeEecCCCcc
Confidence 345778888888888877777888777544 2111 00000 00001112223445 333333333333334
Q ss_pred eEEEEECCCCceee----CCCCCCcceEEEEecCcCeEEEEEccCCceEEEeeCCCCCcccccCCCCCCCC---CCCCCC
Q 011014 210 AIREIQLHDDDCSD----NYDDTFHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAP---YQRPPK 282 (495)
Q Consensus 210 rI~~~d~~g~~~~~----~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ 282 (495)
.|.+-+.......+ ....|--.++.+-. ..+++++.....|| ++.+..+.+.+..+-..+-.| |.....
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V--~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLV--SFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCceE--EEEeccCCCCCCceeeecCCCccceeeeec
Confidence 44444544433322 11222223333332 34667777777777 444444333222222222111 233346
Q ss_pred CCCCCCccCCCCCCCCccCccc------hhhhhh--hccchhhHhhhcccccc-------e-eeC-Ccccchhh
Q 011014 283 SARPPLVPTEDDFEKPEEGFFG------SIGRLV--LNTGSTVGEIFGGLFSM-------F-RRK-PVHYQRQH 339 (495)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~-------~-~~~-~~~~~~~~ 339 (495)
++.|.||.. -++|+-++.|- |+=+.- ..+-+-..|.|+.+|.. + |++ |+-|.|++
T Consensus 204 P~~P~Li~~--~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 204 PETPALILV--NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCCceeEEe--ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 788999975 35666677773 222221 12223345667776642 2 233 66667664
No 147
>PTZ00420 coronin; Provisional
Probab=30.36 E-value=8.5e+02 Score=27.62 Aligned_cols=70 Identities=7% Similarity=0.018 Sum_probs=41.3
Q ss_pred CceEEEEcCCCcEE-EEECCCCeeEEEEcCC-CCccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC
Q 011014 84 EPFSVAVSPSGELL-VLDSENNSRPKLVAGS-PEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 161 (495)
Q Consensus 84 ~P~GIAVd~dG~Ly-VaDs~n~~ii~ivaGs-~~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G 161 (495)
.-..|+++|++..+ ++-+... .+++..-. ..-.... .. -.....|+++++|+++++-...+.|+.+|...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dg-tIrIWDl~tg~~~~~i-~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDS-FVNIWDIENEKRAFQI-NM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCC-eEEEEECCCCcEEEEE-ec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 34678888877643 4433333 45554321 1000000 00 02356899999999999887788999999543
No 148
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.97 E-value=36 Score=22.39 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=3.9
Q ss_pred chhHHHHH
Q 011014 2 VRNLVVFL 9 (495)
Q Consensus 2 ~r~~l~ll 9 (495)
||.++.++
T Consensus 8 Kkil~~l~ 15 (25)
T PF08139_consen 8 KKILFPLL 15 (25)
T ss_pred HHHHHHHH
Confidence 55554433
No 149
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=28.92 E-value=8.7e+02 Score=27.27 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=36.8
Q ss_pred EEEECCCCeEEEEECCCCeEEEEECCCCceee----CCC-----CCCcceEEEEecCcCeEEEEEccCCce
Q 011014 192 VVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD----NYD-----DTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 192 Va~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~----~~~-----~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
+++......|+|.|-.|+.++.++..-..+.+ ... -++|.|.-.- .|.+.|+.+..+
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq-----~Iklydm~~~Ki 481 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQ-----SIKLYDMDGGKI 481 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeee-----eEEEEecCCCeE
Confidence 34356667888888888888888866544332 111 1257666555 477778887777
No 150
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=28.88 E-value=98 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
.-..|+++++++.+++=..++.|+++|
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 446899999999888877888998875
No 151
>PRK02889 tolB translocation protein TolB; Provisional
Probab=27.57 E-value=7.7e+02 Score=26.24 Aligned_cols=158 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred eEEEEcCCCc--EEEEECCCCeeEEEEc--CCCCccccccCCCcCccccCCcceEEEcCCCC-EEE--EECCCCEEEEEc
Q 011014 86 FSVAVSPSGE--LLVLDSENNSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI--ADTMNMAIRKIS 158 (495)
Q Consensus 86 ~GIAVd~dG~--LyVaDs~n~~ii~iva--Gs~~g~~G~~dG~~~~a~f~~P~GIAVD~dGn-IYV--AD~~N~rIrk~d 158 (495)
...+++|||+ +|+++...+..+.+.. +..........+ .-...++.+||+ |++ .+.++.+|+.++
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g--------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG--------SNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC--------CccceEECCCCCEEEEEEccCCCceEEEEE
Q ss_pred CCC--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCC---eEEEEECCCCeEEEEECCCCceeeCCCCCCcceE
Q 011014 159 DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC---SLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLGI 233 (495)
Q Consensus 159 ~~G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G---~LyVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GI 233 (495)
.++ +..+ ...........--.....|++....+ .||+.|..+..++++...+.......-+--..-|
T Consensus 271 ~~~~~~~~l--------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 271 ADGSGLRRL--------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred CCCCCcEEC--------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Q ss_pred EEEecCcC--eEEEEEccCCceEEEeeC
Q 011014 234 FVLVAAAF--FGYMLALLQRRVQAMFSS 259 (495)
Q Consensus 234 Avd~~a~~--~~yv~d~~~~Rv~~~~~s 259 (495)
+.....++ .+|+.++....+..+...
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~~~~lt~~ 370 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQVTALTDT 370 (427)
T ss_pred EEEEccCCcEEEEEEECCCCCeEEccCC
No 152
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=27.12 E-value=2.9e+02 Score=27.68 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=19.1
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCC
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSP 114 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~ 114 (495)
.+|.++|++.+|.+-|.+.... ...+-+|.+
T Consensus 90 ~~~lD~Ai~G~GfF~v~~~~G~-~~yTR~G~F 120 (261)
T PRK12693 90 GNSLDVAIEGQGFFQVQLPDGT-IAYTRDGSF 120 (261)
T ss_pred CCcceEEECCCcEEEEEcCCCC-eEEeeCCCe
Confidence 5899999988887666543322 233444543
No 153
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=6.6e+02 Score=25.29 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=58.5
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCe
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d~~G---V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~r 210 (495)
+|++.|.+ +|+.+|. +.-++.-|+.. ..++.-.-.|. | ..++| .+-+ -+|.||---+...+
T Consensus 134 WgLt~d~~-~LimsdG-satL~frdP~tfa~~~~v~VT~~g~-------p--v~~LN---ELE~--VdG~lyANVw~t~~ 197 (262)
T COG3823 134 WGLTSDDK-NLIMSDG-SATLQFRDPKTFAELDTVQVTDDGV-------P--VSKLN---ELEW--VDGELYANVWQTTR 197 (262)
T ss_pred eeeecCCc-ceEeeCC-ceEEEecCHHHhhhcceEEEEECCe-------e--ccccc---ceee--eccEEEEeeeeecc
Confidence 58888854 5888874 66677777543 22221111110 0 11222 2222 35677777777788
Q ss_pred EEEEECCCCceee-C-------------CCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 211 IREIQLHDDDCSD-N-------------YDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 211 I~~~d~~g~~~~~-~-------------~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
|.+|+++...+.. . .....+.|||-+.. ...+|++..+=..+
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~-~~r~~iTGK~wp~l 253 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ-QDRFLITGKLWPLL 253 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCc-CCeEEEecCcCcee
Confidence 8888888766532 1 11224789998863 44678877654444
No 154
>PRK03629 tolB translocation protein TolB; Provisional
Probab=26.81 E-value=8e+02 Score=26.19 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=17.8
Q ss_pred eEEEcCCCC-EEEE-E-CCCCEEEEEcCCC
Q 011014 135 GLAVDDRGN-IYIA-D-TMNMAIRKISDTG 161 (495)
Q Consensus 135 GIAVD~dGn-IYVA-D-~~N~rIrk~d~~G 161 (495)
.+++++||+ |+++ + .++..|+.++.++
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 568888887 5544 3 2345788888544
No 155
>PLN00181 protein SPA1-RELATED; Provisional
Probab=26.21 E-value=1.1e+03 Score=27.44 Aligned_cols=120 Identities=10% Similarity=0.098 Sum_probs=61.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeeEEEEcCCCCcccccc-CCCc-CccccCCcceEEEcC-CCCEEEEECCCCEEEEEcCC
Q 011014 84 EPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHV-DGRP-RGARMNHPKGLAVDD-RGNIYIADTMNMAIRKISDT 160 (495)
Q Consensus 84 ~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~-dG~~-~~a~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d~~ 160 (495)
.-..|+++++|+++++-..+. .+++..-......+.. .... ....-....++++++ .++++++=..++.|+.+|-.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNK-KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCC-EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 356789999999877765554 5555532110000000 0000 000011234677776 35655655568889999843
Q ss_pred -C--cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCce
Q 011014 161 -G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 161 -G--V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
+ +.++.+-. ..-++|++...++.++++-...+.|+.++.....+
T Consensus 564 ~~~~~~~~~~H~-----------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 564 RSQLVTEMKEHE-----------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred CCeEEEEecCCC-----------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 3 33332210 01234453334566666666667777777765444
No 156
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=25.22 E-value=1e+02 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=21.8
Q ss_pred ceEEEcCCCCEEEEECC-------CCEEEEEcCCC
Q 011014 134 KGLAVDDRGNIYIADTM-------NMAIRKISDTG 161 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~-------N~rIrk~d~~G 161 (495)
..|++.+||+|+|+=.. ...|.+++++|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DG 38 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADG 38 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCC
Confidence 47899999999998642 23478888888
No 157
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=24.99 E-value=6.2e+02 Score=27.16 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=19.8
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEcCCC--cEEEec
Q 011014 132 HPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAG 167 (495)
Q Consensus 132 ~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G--V~tiaG 167 (495)
.|-.|..|+...+-+.+.....|+.|+..| +.++..
T Consensus 41 GpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w 78 (410)
T PF04841_consen 41 GPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPW 78 (410)
T ss_pred ceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEE
Confidence 455555554322222233333699999888 666644
No 158
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=24.04 E-value=3e+02 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=18.9
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCC
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSP 114 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~ 114 (495)
.+|.++|++.+|.+-|.+. +.....+-+|.+
T Consensus 90 g~~lD~AI~G~GfF~V~~~-~G~~~yTR~G~F 120 (260)
T PRK12694 90 GNSKDVAINGQGFFQVLMP-DGTTAYTRDGSF 120 (260)
T ss_pred CCcceEEEcCCcEEEEEcC-CCCeEEeeCCCc
Confidence 5899999988886655543 321334445543
No 159
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=23.84 E-value=4.4e+02 Score=28.91 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=28.0
Q ss_pred ccCCcceEEEcC-CCCEEEEECCCCEEEEEc-CCC-cEEEecC
Q 011014 129 RMNHPKGLAVDD-RGNIYIADTMNMAIRKIS-DTG-VTTIAGG 168 (495)
Q Consensus 129 ~f~~P~GIAVD~-dGnIYVAD~~N~rIrk~d-~~G-V~tiaGg 168 (495)
-..+-.+|.+|+ +++|+|+-+..+.|.+|+ .++ +.=+.|.
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 345667999999 777888888888999999 666 5545454
No 160
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.60 E-value=8.6e+02 Score=25.43 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=83.2
Q ss_pred CceEEEeecCCCCCCCceEEEEcCCC-cEEEEECCCC-----eeEEEEcCCCC---ccccccCCCcC-------ccccCC
Q 011014 69 GYTVETVFEGSKFGMEPFSVAVSPSG-ELLVLDSENN-----SRPKLVAGSPE---GYYGHVDGRPR-------GARMNH 132 (495)
Q Consensus 69 G~~~~~~~~G~~~~~~P~GIAVd~dG-~LyVaDs~n~-----~ii~ivaGs~~---g~~G~~dG~~~-------~a~f~~ 132 (495)
+|.....+.+ .+..|+.|.+.+|| .|.|+..+=. ++.++...+-. -+.-..+|... ...-.+
T Consensus 87 ~~~ri~E~~s--~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPS--HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecC--CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 4544444433 34579999999999 6888764321 12222111000 00000011110 111224
Q ss_pred cceEEEcCCCCEEEEECCCCE-------EEEEcCCC-cEEEecCcccCCCCCCCCCCc-Cccc-CCCceEEEECCCC-eE
Q 011014 133 PKGLAVDDRGNIYIADTMNMA-------IRKISDTG-VTTIAGGKWSRGVGHVDGPSE-DAKF-SNDFDVVYVGSSC-SL 201 (495)
Q Consensus 133 P~GIAVD~dGnIYVAD~~N~r-------Irk~d~~G-V~tiaGg~~G~~~g~~dG~~~-~a~f-~~P~gVa~vd~~G-~L 201 (495)
-.-+|++.+|.++++-.+... |-.+..++ +..+.. +.. ...| ++--+|++ +.+| .+
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~------------p~~~~~~l~~Y~gSIa~-~~~g~~i 231 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPA------------PEEQWRRLNGYIGSIAA-DRDGRLI 231 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccC------------ChHHHHhhCCceEEEEE-eCCCCEE
Confidence 457888888888887543221 22222222 111110 000 1122 34446774 5555 67
Q ss_pred EEEECCCCeEEEEECCCCceeeCCCCCCcceEEEEecCcCeEEEEEccCCce
Q 011014 202 LVIDRGNQAIREIQLHDDDCSDNYDDTFHLGIFVLVAAAFFGYMLALLQRRV 253 (495)
Q Consensus 202 yVaD~gN~rI~~~d~~g~~~~~~~~~g~P~GIAvd~~a~~~~yv~d~~~~Rv 253 (495)
.++-...+++..++.....+......---.|+|... .. |++......+
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~--~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTD--DG--FLVSSGQGQL 279 (305)
T ss_pred EEECCCCCEEEEEECCCCCEeeccccCceeeeeecC--Cc--eEEeCCCccE
Confidence 799999999999987776665433332336666664 22 5555555555
No 161
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=23.53 E-value=9.1e+02 Score=25.68 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred EEcCCCcEEEEECCCCeeEEEEcCCC-CccccccCCCcCccccCCcc------------eEEEcCCCCEEEEECCCCEEE
Q 011014 89 AVSPSGELLVLDSENNSRPKLVAGSP-EGYYGHVDGRPRGARMNHPK------------GLAVDDRGNIYIADTMNMAIR 155 (495)
Q Consensus 89 AVd~dG~LyVaDs~n~~ii~ivaGs~-~g~~G~~dG~~~~a~f~~P~------------GIAVD~dGnIYVAD~~N~rIr 155 (495)
++++||.|+.+.+..- -|+++.-.. ..+....+-..+..+-.+|. .+.+.+...|.++-...+.|.
T Consensus 119 afs~DG~lvATGsaD~-SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADA-SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeCCCCcEEEccCCcc-eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Q ss_pred EEcCCC------cEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEECCCCeEEEEECCCCceee--CCCC
Q 011014 156 KISDTG------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NYDD 227 (495)
Q Consensus 156 k~d~~G------V~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~--~~~~ 227 (495)
.||-.. ..++ +-..|.--.-..+.|..+.+-+.-..++.++.++-.|.. ....
T Consensus 198 lFDfsK~saKrA~K~~-------------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVF-------------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred EEecccHHHHHHHHHh-------------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Q ss_pred CCcceEE-EEecCcCeEEEEEccCCceEEEe
Q 011014 228 TFHLGIF-VLVAAAFFGYMLALLQRRVQAMF 257 (495)
Q Consensus 228 g~P~GIA-vd~~a~~~~yv~d~~~~Rv~~~~ 257 (495)
+...+|. |-....+.+||+.....-| ++|
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~I-klw 288 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAI-KLW 288 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcE-Eee
No 162
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.00 E-value=8.7e+02 Score=25.28 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEcC-CCCEEEEECCCCEEEEEcCC-CcEEEecCcccCCCCCCCCCCcCcccCCCc----eEEEECCCCeEEEEECCCCe
Q 011014 137 AVDD-RGNIYIADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDAKFSNDF----DVVYVGSSCSLLVIDRGNQA 210 (495)
Q Consensus 137 AVD~-dGnIYVAD~~N~rIrk~d~~-GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~----gVa~vd~~G~LyVaD~gN~r 210 (495)
++++ ++.||+|-+ .++|...+.+ +-++..|...- .+ .-|..|. .+.+-.-+|+|.-.|.....
T Consensus 142 ~i~~g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~------~~----PiF~splcv~~sv~i~~VdG~l~~f~~sG~q 210 (354)
T KOG4649|consen 142 VIAPGDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATR------FG----PIFASPLCVGSSVIITTVDGVLTSFDESGRQ 210 (354)
T ss_pred eecCCCceEEEEec-cceEEEEccCCCCcceehhhhc------CC----ccccCceeccceEEEEEeccEEEEEcCCCcE
Confidence 5666 889999987 6788888754 33333332110 01 1233333 22323457788888877788
Q ss_pred EEEEECCCC
Q 011014 211 IREIQLHDD 219 (495)
Q Consensus 211 I~~~d~~g~ 219 (495)
|+++...|.
T Consensus 211 vwr~~t~Gp 219 (354)
T KOG4649|consen 211 VWRPATKGP 219 (354)
T ss_pred EEeecCCCc
Confidence 888877664
No 163
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=22.79 E-value=7.3e+02 Score=27.21 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=46.3
Q ss_pred ceEEEcCCCCEEEEEC-------------CCCEEEEEcCCC--cEEEecCcc----cC------CCCCCCCCCcCcccCC
Q 011014 134 KGLAVDDRGNIYIADT-------------MNMAIRKISDTG--VTTIAGGKW----SR------GVGHVDGPSEDAKFSN 188 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~-------------~N~rIrk~d~~G--V~tiaGg~~----G~------~~g~~dG~~~~a~f~~ 188 (495)
+.+..+++|++++.-. ....|..+|.+| +..+--... .. ..+...+.....--..
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H 272 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLH 272 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccc
Confidence 5788889999655333 256788999888 333211100 00 0000011111222345
Q ss_pred CceEEEECCCCeEEEEECCCCeEEEEECCCCceee
Q 011014 189 DFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 223 (495)
Q Consensus 189 P~gVa~vd~~G~LyVaD~gN~rI~~~d~~g~~~~~ 223 (495)
-++|.++..+++|+|+-+..+.|.+|+..+..+..
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 56888777799999999999999999966655543
No 164
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=22.49 E-value=81 Score=27.02 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=11.2
Q ss_pred ceeccCCCCCCCCCCCC
Q 011014 355 ESYVIPDEDEPPPLETR 371 (495)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (495)
-...|||++.+|++..+
T Consensus 21 A~V~mpeee~E~~~~~~ 37 (95)
T PF05586_consen 21 AVVKMPEEEFEPPMIRP 37 (95)
T ss_pred ceEeCCcccccCccCCC
Confidence 46789977777664433
No 165
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.48 E-value=8.7e+02 Score=25.09 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCceEEEEcCCCcEEEEECCCCeeEEEEcCCCCccccccCCCcCccccCCcceEE---EcCCCCEEEEECCCCEEEEEc-
Q 011014 83 MEPFSVAVSPSGELLVLDSENNSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLA---VDDRGNIYIADTMNMAIRKIS- 158 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~~g~~G~~dG~~~~a~f~~P~GIA---VD~dGnIYVAD~~N~rIrk~d- 158 (495)
..+..+.+..+|.++..-++.. +.-.-+.+. +.. ..+..|.-|+ ..++-++|||-.....+++||
T Consensus 185 s~VtSlEvs~dG~ilTia~gss-V~Fwdaksf-~~l---------Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGSS-VKFWDAKSF-GLL---------KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred CCCcceeeccCCCEEEEecCce-eEEeccccc-cce---------eeccCccccccccccCCCceEEecCcceEEEEEec
Confidence 4578899999999877665554 322222222 111 1234455443 346678999988888999999
Q ss_pred CCCcEEEecCcccCCCCCCCCCCcCcccCCC-ceEEEECCCCeEEEEECCCCeEEEEE
Q 011014 159 DTGVTTIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQ 215 (495)
Q Consensus 159 ~~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P-~gVa~vd~~G~LyVaD~gN~rI~~~d 215 (495)
..|...-.-. . +.| .| .+|- ..++|.+|-+-...+.|+...
T Consensus 254 ~TgeEi~~~n-k-------------gh~-gpVhcVr-FSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 254 NTGEEIGSYN-K-------------GHF-GPVHCVR-FSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cCCceeeecc-c-------------CCC-CceEEEE-ECCCCceeeccCCCceEEEEE
Confidence 4442221100 0 112 23 3344 577788887777666666554
No 166
>PRK15228 fimbrial protein SefA; Provisional
Probab=22.16 E-value=1.8e+02 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHHHhhccccC
Q 011014 1 MVRNLVVFLLILVFFFGGFSSVS 23 (495)
Q Consensus 1 M~r~~l~llllllLll~~~ssa~ 23 (495)
|||.... +++++|..|+++.++
T Consensus 1 MR~~~S~-i~ilALmtCGaA~AA 22 (165)
T PRK15228 1 MRKSASA-VAVLALIACGSAHAA 22 (165)
T ss_pred CCcchhH-HHHHHHHHccccchh
Confidence 7766543 455667777776655
No 167
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=21.99 E-value=7.8e+02 Score=24.35 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=68.9
Q ss_pred EEcCCCcEEEEECCCCeeEEEEc-CCCCccccccCCCcCccccC-CcceEEEcCCCC---EEEEECCCCEEEEEc----C
Q 011014 89 AVSPSGELLVLDSENNSRPKLVA-GSPEGYYGHVDGRPRGARMN-HPKGLAVDDRGN---IYIADTMNMAIRKIS----D 159 (495)
Q Consensus 89 AVd~dG~LyVaDs~n~~ii~iva-Gs~~g~~G~~dG~~~~a~f~-~P~GIAVD~dGn---IYVAD~~N~rIrk~d----~ 159 (495)
.+|++|.+|+++........+.. .+.....-..+-. .+. .-..+.+.+||. +.+.+....+|.+-. .
T Consensus 72 S~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~----~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 72 SWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP----GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred cccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccc----ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 78899999999986663333321 1111111001111 111 446889999997 444444456665432 2
Q ss_pred CCcEEEecCcccCCCCCCCCCCcCcccCCCceEEEECCCCeEEEEE-CCCCeEEE-EECCCCceeeC-CCCCCcceEEEE
Q 011014 160 TGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID-RGNQAIRE-IQLHDDDCSDN-YDDTFHLGIFVL 236 (495)
Q Consensus 160 ~GV~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd~~G~LyVaD-~gN~rI~~-~d~~g~~~~~~-~~~g~P~GIAvd 236 (495)
+|+....+.... .....+....+++..+. +.|.|.- .....+.. +..+|...... ....-+.-+++.
T Consensus 148 ~g~~~~l~~~~~---------~~~~~~~~v~~v~W~~~-~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~ 217 (253)
T PF10647_consen 148 DGVPRRLTGPRR---------VAPPLLSDVTDVAWSDD-STLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVA 217 (253)
T ss_pred CCCcceeccceE---------ecccccCcceeeeecCC-CEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEee
Confidence 331111111100 01112345567776544 4555554 44444666 77777654432 222223333333
Q ss_pred ecCcCeEEEEEc
Q 011014 237 VAAAFFGYMLAL 248 (495)
Q Consensus 237 ~~a~~~~yv~d~ 248 (495)
. ....+|+++.
T Consensus 218 ~-~~~~~~~t~~ 228 (253)
T PF10647_consen 218 A-SPSTVYVTDD 228 (253)
T ss_pred C-CCcEEEEECC
Confidence 3 2335666653
No 168
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.42 E-value=1e+03 Score=25.57 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=17.9
Q ss_pred ceEEEcCCCC--EEEEEC-CCCEEEEEcCCC
Q 011014 134 KGLAVDDRGN--IYIADT-MNMAIRKISDTG 161 (495)
Q Consensus 134 ~GIAVD~dGn--IYVAD~-~N~rIrk~d~~G 161 (495)
...++++||. +|++|. ++..|.+++.++
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 4567788887 344554 356788888543
No 169
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.17 E-value=3.2e+02 Score=27.30 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=15.0
Q ss_pred CCceEEEEcCCCcEEEEECC
Q 011014 83 MEPFSVAVSPSGELLVLDSE 102 (495)
Q Consensus 83 ~~P~GIAVd~dG~LyVaDs~ 102 (495)
.+|.++|++.+|.+-|.+..
T Consensus 76 g~~lDlAI~G~GFF~V~~~~ 95 (238)
T PRK12690 76 GGQFDFAIEGEGFFMVETPQ 95 (238)
T ss_pred CCceeEEECCCcEEEEEcCC
Confidence 47999999888877666543
No 170
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.07 E-value=8.8e+02 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=14.3
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc
Q 011014 134 KGLAVDDRGNIYIADTMNMAIRKIS 158 (495)
Q Consensus 134 ~GIAVD~dGnIYVAD~~N~rIrk~d 158 (495)
..||||+.|+|.++-.....-..+|
T Consensus 235 aav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEE
Confidence 4677777777777644333333333
No 171
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=20.75 E-value=1.2e+03 Score=26.22 Aligned_cols=116 Identities=22% Similarity=0.156 Sum_probs=69.1
Q ss_pred ceEEEEcCCCcEEEEECCCCeeEEEEcCCC-CccccccCCCcCccccCCcceEEEcCCCCEEEEECCCCEEEEEcCCC-c
Q 011014 85 PFSVAVSPSGELLVLDSENNSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-V 162 (495)
Q Consensus 85 P~GIAVd~dG~LyVaDs~n~~ii~ivaGs~-~g~~G~~dG~~~~a~f~~P~GIAVD~dGnIYVAD~~N~rIrk~d~~G-V 162 (495)
+.-|+-. .+.|||--+.|....-.+.... .-..|+.+ .-+|+|..++.++|++-.-...++..+... +
T Consensus 332 iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d---------elwgla~hps~~q~~T~gqdk~v~lW~~~k~~ 401 (626)
T KOG2106|consen 332 IRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGD---------ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLE 401 (626)
T ss_pred eeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccc---------ceeeEEcCCChhheeeccCcceEEEccCCcee
Confidence 3444443 3558888887771111121111 12233322 346999999999999988888888888555 3
Q ss_pred EEEecCcccCCCCCCCCCCcCcccCCCceEEEEC-CCCeEEEEECCCCeEEEEECCCCce
Q 011014 163 TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-SSCSLLVIDRGNQAIREIQLHDDDC 221 (495)
Q Consensus 163 ~tiaGg~~G~~~g~~dG~~~~a~f~~P~gVa~vd-~~G~LyVaD~gN~rI~~~d~~g~~~ 221 (495)
.+..-... +..+. ..|.+++++. ..|..+|.|..+.-+..+..++..+
T Consensus 402 wt~~~~d~----------~~~~~-fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 402 WTKIIEDP----------AECAD-FHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred EEEEecCc----------eeEee-ccCcceEEEeeccceEEEEecccceeEEEEecCCce
Confidence 33322211 11122 3677755554 4788999999888777777775444
No 172
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=73 Score=29.65 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHHHhhccccC
Q 011014 1 MVRNLVVFLLILVFFFGGFSSVS 23 (495)
Q Consensus 1 M~r~~l~llllllLll~~~ssa~ 23 (495)
|+|..++.+|++++++|+...++
T Consensus 1 M~rf~~i~lL~~A~lls~plva~ 23 (166)
T COG3495 1 MNRFTSITLLAAALLLSAPLVAA 23 (166)
T ss_pred CchhHHHHHHHHHHHhcchhhhc
Confidence 89998888888887776655443
No 173
>PRK05137 tolB translocation protein TolB; Provisional
Probab=20.64 E-value=1e+03 Score=25.23 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=19.4
Q ss_pred eEEEcCCCC--EEEEEC-CCCEEEEEcCCC--cEEE
Q 011014 135 GLAVDDRGN--IYIADT-MNMAIRKISDTG--VTTI 165 (495)
Q Consensus 135 GIAVD~dGn--IYVAD~-~N~rIrk~d~~G--V~ti 165 (495)
..++++||+ +|++|. +...|.+++.+| +..+
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 467788887 445543 245788888655 4444
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=20.39 E-value=1.1e+03 Score=25.27 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=19.5
Q ss_pred ceEEEcCCCC--EEEEECC-CCEEEEEcCCC
Q 011014 134 KGLAVDDRGN--IYIADTM-NMAIRKISDTG 161 (495)
Q Consensus 134 ~GIAVD~dGn--IYVAD~~-N~rIrk~d~~G 161 (495)
...++.++|+ +|++|.. ..+|.+++.++
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 4678888988 4666653 45788888554
No 175
>PRK05137 tolB translocation protein TolB; Provisional
Probab=20.14 E-value=1.1e+03 Score=25.15 Aligned_cols=26 Identities=4% Similarity=-0.040 Sum_probs=17.0
Q ss_pred eEEEcCCCC--EEEEEC-CCCEEEEEcCC
Q 011014 135 GLAVDDRGN--IYIADT-MNMAIRKISDT 160 (495)
Q Consensus 135 GIAVD~dGn--IYVAD~-~N~rIrk~d~~ 160 (495)
..++.+||+ +|+++. ++..|++++..
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~ 234 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLE 234 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECC
Confidence 566778887 455543 35678888844
Done!