BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011015
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 126 QLFDKLTCLRALTLETHCCFDFIQKIPKNI-EKLIHLKYLNLCGQTEIEKLPETLCE-LY 183
Q D+L L+ T + IP N+ + +L +L L + IE++P L + L
Sbjct: 117 QHLDRLHGLKRFRFTTR----RLTHIPANLLTDMRNLSHLEL--RANIEEMPSHLFDDLE 170
Query: 184 NLECLNVSGCWNLRELPRGI-GKLRKLMYLYNEGTSCLRYLPVGI-GELISLREV 236
NLE + G LR++PRGI GK+ KL L N ++ L+ +P GI L SL+++
Sbjct: 171 NLESIEF-GSNKLRQMPRGIFGKMPKLKQL-NLASNQLKSVPDGIFDRLTSLQKI 223
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 121 SKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNI-EKLIHLKYLNLCGQTEIEKLPETL 179
+K+ P +FD L L+ L L + + + +P + + L L L+L G ++ LP +
Sbjct: 53 TKLEPGVFDSLINLKELYLGS----NQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAV 107
Query: 180 CE-LYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238
+ L +L+ L + C L ELPRGI +L L +L + L+ +P G + +S
Sbjct: 108 FDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLS-SLTHA 164
Query: 239 FVVGGGYDRAC 249
++ G +D C
Sbjct: 165 YLFGNPWDCEC 175
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 131 LTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNV 190
L L++L LE + I+ +P +I L +LK L + + + L + L LE L++
Sbjct: 182 LVNLQSLRLE----WTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDL 236
Query: 191 SGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236
GC LR P G L L + S L LP+ I L L ++
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 51/215 (23%)
Query: 68 IPGGMSSFEQKKVLHLMLTVDVG-TSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQ 126
+P G+ F++ K L + D ++PI +++ + + LR D + + P+
Sbjct: 76 LPAGI--FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL------DRNQLKSLPPR 127
Query: 127 LFDKLTCLRALTLETHCCFDFIQKIPKNI-EKLIHLKYLNLCGQTEIEKLPE----TLCE 181
+FD LT L L+L ++ +Q +PK + +KL LK L L +++++PE L E
Sbjct: 128 VFDSLTKLTYLSLG----YNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182
Query: 182 LYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFV 240
L L+ N L+ +P G L KL +++ L+E
Sbjct: 183 LKTLKLDNNQ----LKRVPEGAFDSLEKL-------------------KMLQLQE----- 214
Query: 241 VGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAG 275
+D C+ G + L+K + GLGGV AG
Sbjct: 215 --NPWDCTCN-GIIYMAKWLKKKADEGLGGVDTAG 246
>pdb|3LN6|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Streptococcus Agalactiae
Length = 750
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 213 YNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVS 272
Y EGT ++ G + LR V VVG G L LK N LR R V
Sbjct: 567 YIEGTEYRFFVLEGDCIAVLLR-VAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVI 625
Query: 273 DAGEVRRAELEKQKYLV 289
+ GEV + LE+Q Y V
Sbjct: 626 ELGEVEQLMLEQQGYTV 642
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 158 LIHLKYLNLCGQTEIEK-LPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEG 216
L L+ L + G + E LP+ EL NL L++S C + P L L L N
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMA 502
Query: 217 TSCLRYLPVGIGE-LISLREV 236
++ L+ +P GI + L SL+++
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKI 523
>pdb|2F9Z|C Chain C, Complex Between The Chemotaxis Deamidase Ched And The
Chemotaxis Phosphatase Chec From Thermotoga Maritima
pdb|2F9Z|D Chain D, Complex Between The Chemotaxis Deamidase Ched And The
Chemotaxis Phosphatase Chec From Thermotoga Maritima
Length = 159
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 35 KTDGDGKVYGCKMHDLVHDVAQFICRNECLTVKIPGGMSSFEQK 78
KTD GK + LV ++ + + E L KI GG S FE K
Sbjct: 55 KTDKPGKYADTAVKTLVEELKKMGAKVERLEAKIAGGASMFESK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,257,928
Number of Sequences: 62578
Number of extensions: 641002
Number of successful extensions: 1228
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 22
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)