Query 011015
Match_columns 495
No_of_seqs 257 out of 3595
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:08:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.7E-29 1.9E-33 269.4 23.1 402 21-474 471-909 (1153)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-29 3.8E-34 274.7 16.9 367 79-471 141-560 (968)
3 PLN00113 leucine-rich repeat r 100.0 4.4E-29 9.5E-34 271.6 16.0 352 79-471 165-584 (968)
4 KOG4658 Apoptotic ATPase [Sign 99.9 5.1E-28 1.1E-32 250.3 11.9 205 1-217 438-652 (889)
5 KOG4194 Membrane glycoprotein 99.9 7.5E-27 1.6E-31 218.7 4.3 343 79-471 79-429 (873)
6 KOG0444 Cytoskeletal regulator 99.9 9.7E-28 2.1E-32 226.4 -4.5 343 79-472 33-376 (1255)
7 KOG4194 Membrane glycoprotein 99.9 2.6E-25 5.6E-30 208.5 4.5 342 79-467 103-448 (873)
8 KOG0444 Cytoskeletal regulator 99.9 8.6E-26 1.9E-30 213.4 -2.7 341 79-471 8-352 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 3.1E-25 6.8E-30 199.1 -4.8 263 78-379 45-308 (565)
10 PLN03210 Resistant to P. syrin 99.9 3.8E-21 8.2E-26 209.9 18.5 317 79-450 590-909 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.9E-22 8.4E-27 179.3 -6.7 314 125-470 199-540 (565)
12 KOG0618 Serine/threonine phosp 99.8 1.5E-20 3.2E-25 185.9 -2.2 88 79-179 46-133 (1081)
13 KOG0618 Serine/threonine phosp 99.7 2.9E-18 6.3E-23 169.9 -1.4 340 80-470 23-419 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 4.5E-15 9.9E-20 151.4 13.7 115 105-244 201-315 (788)
15 PRK15387 E3 ubiquitin-protein 99.5 2.6E-14 5.6E-19 145.9 11.6 262 79-452 202-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1.5E-14 3.2E-19 148.5 9.7 136 80-242 180-315 (754)
17 KOG0617 Ras suppressor protein 99.5 3.9E-16 8.4E-21 124.8 -2.7 153 79-245 34-187 (264)
18 cd00116 LRR_RI Leucine-rich re 99.5 1.1E-15 2.4E-20 145.5 -1.6 277 151-469 15-318 (319)
19 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.3E-20 138.0 -1.9 149 82-244 50-201 (498)
20 PRK15370 E3 ubiquitin-protein 99.5 4.3E-14 9.2E-19 145.2 9.5 116 106-242 179-294 (754)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.8E-15 6.1E-20 142.7 0.3 115 104-219 22-149 (319)
22 KOG0617 Ras suppressor protein 99.5 6.5E-16 1.4E-20 123.5 -3.9 49 312-363 143-191 (264)
23 KOG4237 Extracellular matrix p 99.4 7.4E-15 1.6E-19 132.6 -4.2 275 79-379 68-357 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.4 2.2E-13 4.7E-18 142.2 5.3 323 104-468 522-856 (889)
25 KOG4341 F-box protein containi 99.2 1.6E-12 3.5E-17 118.7 -3.0 167 311-494 286-456 (483)
26 KOG1909 Ran GTPase-activating 99.0 7.2E-11 1.6E-15 105.7 1.1 209 204-446 89-310 (382)
27 KOG1909 Ran GTPase-activating 98.9 1.9E-10 4.1E-15 103.1 1.1 240 104-379 29-309 (382)
28 PF14580 LRR_9: Leucine-rich r 98.9 9.1E-10 2E-14 92.4 5.0 125 104-240 18-149 (175)
29 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 91.9 5.5 122 79-215 20-148 (175)
30 KOG3207 Beta-tubulin folding c 98.9 7.8E-10 1.7E-14 102.0 4.1 157 79-245 122-285 (505)
31 KOG0532 Leucine-rich repeat (L 98.9 6.9E-11 1.5E-15 112.2 -3.2 215 82-356 54-271 (722)
32 KOG4341 F-box protein containi 98.8 1.7E-10 3.7E-15 105.7 -2.8 269 159-477 138-420 (483)
33 KOG3207 Beta-tubulin folding c 98.8 5.8E-10 1.3E-14 102.8 -0.3 179 79-265 147-333 (505)
34 KOG1259 Nischarin, modulator o 98.7 3.9E-09 8.5E-14 92.7 0.7 129 104-244 283-412 (490)
35 KOG1259 Nischarin, modulator o 98.7 3E-09 6.5E-14 93.5 -0.4 130 76-221 282-413 (490)
36 COG4886 Leucine-rich repeat (L 98.7 2.5E-08 5.3E-13 97.8 5.6 198 109-363 97-295 (394)
37 COG4886 Leucine-rich repeat (L 98.6 3.2E-08 7E-13 97.0 5.9 192 136-380 97-289 (394)
38 KOG0532 Leucine-rich repeat (L 98.6 2E-09 4.3E-14 102.6 -2.8 171 80-268 100-270 (722)
39 PLN03150 hypothetical protein; 98.6 1.2E-07 2.7E-12 97.4 8.5 107 133-242 419-526 (623)
40 PLN03150 hypothetical protein; 98.6 9E-08 2E-12 98.4 7.0 86 160-245 419-504 (623)
41 KOG2120 SCF ubiquitin ligase, 98.6 2E-09 4.2E-14 94.5 -4.9 115 255-379 257-374 (419)
42 KOG2120 SCF ubiquitin ligase, 98.5 2.9E-09 6.3E-14 93.4 -4.1 182 207-415 185-374 (419)
43 PF13855 LRR_8: Leucine rich r 98.3 9.3E-07 2E-11 60.7 4.3 57 133-194 2-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.3 1E-06 2.2E-11 60.5 4.3 58 159-218 1-60 (61)
45 KOG2982 Uncharacterized conser 98.2 5.1E-07 1.1E-11 79.7 1.0 83 285-376 198-287 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.2 6.1E-07 1.3E-11 78.2 1.4 154 284-448 155-317 (388)
47 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.2E-12 89.6 -0.4 129 104-245 71-200 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.0 2.4E-06 5.1E-11 74.6 1.6 242 104-379 29-314 (388)
49 KOG3665 ZYG-1-like serine/thre 98.0 7.5E-06 1.6E-10 84.2 4.8 148 79-237 123-281 (699)
50 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 85.4 -0.5 108 129-245 69-176 (414)
51 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 50.3 3.6 34 160-194 2-35 (44)
52 KOG1859 Leucine-rich repeat pr 97.9 9.6E-07 2.1E-11 87.1 -3.5 108 127-243 182-291 (1096)
53 KOG2982 Uncharacterized conser 97.8 4.2E-06 9.1E-11 74.0 0.5 87 103-194 69-157 (418)
54 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.9E-10 82.5 2.8 135 159-297 122-261 (699)
55 KOG4579 Leucine-rich repeat (L 97.7 2.3E-06 5E-11 66.7 -3.3 89 104-201 52-140 (177)
56 PF12799 LRR_4: Leucine Rich r 97.7 5.2E-05 1.1E-09 47.6 3.3 39 133-176 2-40 (44)
57 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.2E-10 63.2 -0.5 89 79-179 54-142 (177)
58 KOG1947 Leucine rich repeat pr 97.5 1.4E-05 3E-10 80.8 -0.8 41 436-476 403-445 (482)
59 KOG1859 Leucine-rich repeat pr 97.5 3.1E-06 6.7E-11 83.6 -5.5 132 71-219 157-291 (1096)
60 PRK15386 type III secretion pr 97.5 0.00022 4.8E-09 67.8 6.7 66 311-383 44-109 (426)
61 PRK15386 type III secretion pr 97.4 0.00036 7.8E-09 66.4 6.1 62 104-177 51-112 (426)
62 KOG1947 Leucine rich repeat pr 97.3 2.1E-05 4.6E-10 79.5 -2.9 40 438-477 380-420 (482)
63 KOG1644 U2-associated snRNP A' 97.3 0.00038 8.2E-09 58.5 4.6 100 106-216 43-149 (233)
64 KOG1644 U2-associated snRNP A' 97.2 0.00034 7.4E-09 58.8 3.8 61 155-217 60-123 (233)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00046 9.9E-09 60.5 0.5 86 155-242 39-127 (260)
66 KOG2123 Uncharacterized conser 96.7 0.00016 3.4E-09 63.7 -2.6 99 104-213 18-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0009 1.9E-08 58.7 1.0 90 124-219 35-128 (260)
68 KOG2123 Uncharacterized conser 96.5 0.00024 5.3E-09 62.6 -2.9 99 131-237 18-123 (388)
69 PF13306 LRR_5: Leucine rich r 95.3 0.056 1.2E-06 43.3 6.3 100 103-216 10-112 (129)
70 KOG3864 Uncharacterized conser 95.1 0.0014 3E-08 55.2 -3.6 16 404-419 151-166 (221)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.7E-07 30.5 1.0 17 161-178 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.5E-07 30.1 0.9 18 185-203 2-19 (22)
73 KOG3864 Uncharacterized conser 94.5 0.0034 7.4E-08 52.9 -2.8 68 401-472 122-190 (221)
74 KOG0473 Leucine-rich repeat pr 92.5 0.0063 1.4E-07 52.5 -4.5 82 104-194 41-122 (326)
75 PF13504 LRR_7: Leucine rich r 91.8 0.12 2.6E-06 24.8 1.4 10 161-170 3-12 (17)
76 PF13306 LRR_5: Leucine rich r 91.4 0.52 1.1E-05 37.5 5.7 101 126-237 6-109 (129)
77 KOG0473 Leucine-rich repeat pr 91.0 0.0066 1.4E-07 52.4 -5.9 86 128-219 38-123 (326)
78 smart00367 LRR_CC Leucine-rich 89.3 0.14 3.1E-06 27.7 0.4 21 457-477 1-21 (26)
79 KOG4308 LRR-containing protein 88.2 0.0042 9.1E-08 61.5 -10.7 186 274-474 103-306 (478)
80 KOG4308 LRR-containing protein 87.2 0.017 3.7E-07 57.3 -7.2 48 426-474 396-448 (478)
81 smart00370 LRR Leucine-rich re 86.6 0.64 1.4E-05 25.0 2.0 18 159-177 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 86.6 0.64 1.4E-05 25.0 2.0 18 159-177 2-19 (26)
83 PF13516 LRR_6: Leucine Rich r 74.7 1.2 2.6E-05 23.3 0.4 12 159-170 2-13 (24)
84 smart00364 LRR_BAC Leucine-ric 59.0 6.5 0.00014 21.2 1.2 17 160-177 3-19 (26)
85 KOG3763 mRNA export factor TAP 58.4 8.3 0.00018 38.4 2.7 36 104-140 217-252 (585)
86 smart00365 LRR_SD22 Leucine-ri 49.3 14 0.0003 20.0 1.5 14 105-118 2-15 (26)
87 smart00368 LRR_RI Leucine rich 45.9 17 0.00037 19.9 1.6 12 159-170 2-13 (28)
88 KOG3763 mRNA export factor TAP 34.8 22 0.00047 35.6 1.5 64 157-221 216-284 (585)
89 PF14162 YozD: YozD-like prote 32.6 62 0.0013 20.7 2.7 21 13-33 9-29 (57)
90 PF13463 HTH_27: Winged helix 30.3 1.1E+02 0.0024 20.6 4.2 31 17-47 34-64 (68)
91 KOG4242 Predicted myosin-I-bin 30.2 1E+02 0.0022 30.6 5.0 118 345-468 354-478 (553)
92 COG3432 Predicted transcriptio 24.2 1.1E+02 0.0023 22.9 3.2 38 14-54 44-81 (95)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=8.7e-29 Score=269.44 Aligned_cols=402 Identities=22% Similarity=0.208 Sum_probs=235.2
Q ss_pred HHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHHHHHhccceE------EEecCC-------CCCCCCCCceEEEEEEe
Q 011015 21 YFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVAQFICRNECL------TVKIPG-------GMSSFEQKKVLHLMLTV 87 (495)
Q Consensus 21 ~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~~l~l~~ 87 (495)
.++.|+++||++... + .++|||++++||+++++.+.. +...+. ...... +++.+.+..
T Consensus 471 ~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~--~v~~i~l~~ 541 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTK--KVLGITLDI 541 (1153)
T ss_pred ChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccc--eeeEEEecc
Confidence 478899999997632 2 479999999999999987641 010000 011122 567776665
Q ss_pred ccCCCcchhhhcccccCCCccEEEEcCCccC---cccccchHHhhcC-CeeeEEEccCccCccccccccccccCcCCcce
Q 011015 88 DVGTSVPIAIWNNVKRMRRLRSLLVEGGDYS---WSSKVLPQLFDKL-TCLRALTLETHCCFDFIQKIPKNIEKLIHLKY 163 (495)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~ 163 (495)
........ -..+|.+|++|+.|.+..+... .....+|..|..+ ..||.|++. ++. ...+|..+ ...+|+.
T Consensus 542 ~~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~-~~~---l~~lP~~f-~~~~L~~ 615 (1153)
T PLN03210 542 DEIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD-KYP---LRCMPSNF-RPENLVK 615 (1153)
T ss_pred Cccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec-CCC---CCCCCCcC-CccCCcE
Confidence 54443111 1112334888888888665321 1122245555554 347777776 544 56666555 3567777
Q ss_pred EecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecC
Q 011015 164 LNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGG 243 (495)
Q Consensus 164 L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 243 (495)
|+++++. +..+|..+..+++|+.|+|+++..+..+| .++.+++|+.|++++|.....+|..++++++|+.|++..|..
T Consensus 616 L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 616 LQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EECcCcc-ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 7777776 66666666667777777777665555565 356667777777777666666666677777777777665543
Q ss_pred ccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCcc------------chhHHH
Q 011015 244 GYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEE------------DEDERL 311 (495)
Q Consensus 244 ~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~ 311 (495)
....+. -..+++|+.|.+.++....... ....+|+.|+++.+.+..-.... .....+
T Consensus 694 L~~Lp~----~i~l~sL~~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 694 LEILPT----GINLKSLYRLNLSGCSRLKSFP-------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred cCccCC----cCCCCCCCEEeCCCCCCccccc-------cccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 321111 1145555555555543322111 01235555555555422100000 000000
Q ss_pred --------hhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceE
Q 011015 312 --------LEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKR 383 (495)
Q Consensus 312 --------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 383 (495)
......+++|+.|++++|.... .+ |.++.++++|+.|++++|...+.+|....+++|++|++++|..++.
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLV-EL-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCcc-cc-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 0001123456666666654332 14 5556666666666666666665565544566666666666654432
Q ss_pred eCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEE
Q 011015 384 VGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKL 463 (495)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L 463 (495)
++. ..++|+.|+++++. + ..+|.++..+++|+.|++++|+.+..+|..+..+++|+.+
T Consensus 841 ~p~---------------~~~nL~~L~Ls~n~-i------~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 841 FPD---------------ISTNISDLNLSRTG-I------EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred ccc---------------cccccCEeECCCCC-C------ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 211 13456666655443 3 2456778899999999999999999999888899999999
Q ss_pred EEeCCcchhHh
Q 011015 464 WIWGCPILEER 474 (495)
Q Consensus 464 ~l~~~~~l~~~ 474 (495)
++++|+.+...
T Consensus 899 ~l~~C~~L~~~ 909 (1153)
T PLN03210 899 DFSDCGALTEA 909 (1153)
T ss_pred ecCCCcccccc
Confidence 99999987643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.8e-29 Score=274.75 Aligned_cols=367 Identities=18% Similarity=0.161 Sum_probs=202.3
Q ss_pred ceEEEEEEeccCCC-cchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccC
Q 011015 79 KVLHLMLTVDVGTS-VPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 157 (495)
.+++|++.+|.+.. .|..+.. +++|++|++++|. +...+|..+..+++|++|+++ +|.. ...+|..++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~----l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~-~n~l--~~~~p~~l~~ 210 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGS----FSSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLA-SNQL--VGQIPRELGQ 210 (968)
T ss_pred CCCEEECcCCcccccCChHHhc----CCCCCEEECccCc---ccccCChhhhhCcCCCeeecc-CCCC--cCcCChHHcC
Confidence 66777777776653 4444554 7777777777776 333456666666667777766 4431 3445666666
Q ss_pred cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccC
Q 011015 158 LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
+++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 66666666666665555666666666666666666654445555566666666666666655555555555555555555
Q ss_pred eEEecCccCCc---------------------cCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEe
Q 011015 238 KFVVGGGYDRA---------------------CSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFD 296 (495)
Q Consensus 238 l~~~~~~~~~~---------------------~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 296 (495)
+..|......+ .....+..+++|+.|.+....... ..+..+..+++|+.|+++.|
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG----EIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC----cCChHHhCCCCCcEEECCCC
Confidence 55544332111 111223333444444443322111 11122344556666666655
Q ss_pred cCCCCCCcc---------------chhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCC
Q 011015 297 QAGRRENEE---------------DEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHL 361 (495)
Q Consensus 297 ~~~~~~~~~---------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 361 (495)
.+++..... ......+..+..+++|+.|++++|.... ..|..+..+++|+.|++++|.+.+.+
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG--ELPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee--ECChhHhcCCCCCEEECcCCcccCcc
Confidence 543210000 0011223334445566666666665543 22555666666666666666666555
Q ss_pred CC-CCCCCccceeeccccccceEeCcc---------------ccCCCCCCCCCccccCCccceeeecccccccccccccc
Q 011015 362 PP-LGKLPSLEYLVIELMNSVKRVGNE---------------FLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTA 425 (495)
Q Consensus 362 ~~-~~~l~~L~~L~l~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 425 (495)
+. +..+++|+.|++++|.....++.. +.+..+ ..+..+++|+.|++++| .+.+.
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N------~l~~~ 514 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSEN------KLSGE 514 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC----hhhhhhhccCEEECcCC------cceee
Confidence 54 556667777777665532221111 111100 11224455555554433 34456
Q ss_pred cccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 426 IKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 426 l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
+|..+..+++|++|+|++|...+.+|..+..+++|+.|++++|+..
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 6777788888888888888877778888888888888888888764
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.4e-29 Score=271.64 Aligned_cols=352 Identities=19% Similarity=0.162 Sum_probs=190.5
Q ss_pred ceEEEEEEeccCCC-cchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccC----------------
Q 011015 79 KVLHLMLTVDVGTS-VPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLET---------------- 141 (495)
Q Consensus 79 ~~~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~---------------- 141 (495)
+++.|++.+|.+.. .|..+.+ +++|++|++++|.+ ...+|..+..+++|++|++++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~----l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTN----LTSLEFLTLASNQL---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCEEECccCcccccCChhhhh----CcCCCeeeccCCCC---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 55566665555432 3444443 55555555555542 222344444444444444441
Q ss_pred -------ccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEec
Q 011015 142 -------HCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYN 214 (495)
Q Consensus 142 -------~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 214 (495)
+|.. ...+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 238 L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 238 LNHLDLVYNNL--TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCEEECcCcee--ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 2221 2233444444444455555444433444444445555555555555433344444555555555555
Q ss_pred CCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCCh--------------------
Q 011015 215 EGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDA-------------------- 274 (495)
Q Consensus 215 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~-------------------- 274 (495)
++|.+....|..+..+++|+.|++..|.... .....+..+++|+.+++.........
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSG---EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcC---cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 5554444555555555666666665555432 12223444555555555432111000
Q ss_pred hhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccc--------
Q 011015 275 GEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTN-------- 346 (495)
Q Consensus 275 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------- 346 (495)
....+..+..+++|+.|+++.|.+++ ..+..+..++.|+.|++++|.... ..+.++..+++
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSG---------ELPSEFTKLPLVYFLDISNNNLQG--RINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeee---------ECChhHhcCCCCCEEECcCCcccC--ccChhhccCCCCcEEECcC
Confidence 00111234456677777777766432 123334445555555555554443 22333334444
Q ss_pred ---------------cceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceee
Q 011015 347 ---------------LRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLD 410 (495)
Q Consensus 347 ---------------L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 410 (495)
|+.|++++|.+.+..|. +..+++|++|++++|... +..+ ..+..+++|+.|+
T Consensus 462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~p----~~~~~l~~L~~L~ 529 (968)
T PLN00113 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS--------GEIP----DELSSCKKLVSLD 529 (968)
T ss_pred ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce--------eeCC----hHHcCccCCCEEE
Confidence 55555555554444443 455555666666544322 1111 1234689999999
Q ss_pred ecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 411 FYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 411 l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
+++|. +.+.+|..+..+++|++|++++|...+.+|..+..+++|+.+++++|+..
T Consensus 530 Ls~N~------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 530 LSHNQ------LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCCCc------ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 66654 56677888999999999999999988899999999999999999999864
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=5.1e-28 Score=250.31 Aligned_cols=205 Identities=26% Similarity=0.402 Sum_probs=167.5
Q ss_pred CcccccccCC-CCCHHHHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHHHHHhc-----cceEEEecC-C---
Q 011015 1 MAQGYLNEKE-NKEMQDIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVAQFICR-----NECLTVKIP-G--- 70 (495)
Q Consensus 1 i~eg~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~~~~-----~~~~~~~~~-~--- 70 (495)
||||||.+.. +++++|.|++|+.+|++++|++..... ++..+|+|||++++||.+++. .+..+...+ +
T Consensus 438 iaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~ 515 (889)
T KOG4658|consen 438 IAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE 515 (889)
T ss_pred HhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc
Confidence 6999999955 577999999999999999999987655 777899999999999999999 555444443 1
Q ss_pred CCCCCCCCceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc
Q 011015 71 GMSSFEQKKVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK 150 (495)
Q Consensus 71 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 150 (495)
......+..+|+++++++.+...+.... +++|++|-+.+|.. ......++.|..++.|++||++++.. ...
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~-----~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~---l~~ 586 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSE-----NPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSS---LSK 586 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCC-----CCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCc---cCc
Confidence 1111222378999999999986555544 77999999999862 13343456688999999999995544 788
Q ss_pred ccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCc
Q 011015 151 IPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGT 217 (495)
Q Consensus 151 l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 217 (495)
+|..++.+-+||||+++++. +..+|..+++|+.|.+|++..+......|.....+++|++|.+...
T Consensus 587 LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999999999999999999 8899999999999999999998866677766777999999988665
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=7.5e-27 Score=218.73 Aligned_cols=343 Identities=17% Similarity=0.162 Sum_probs=233.6
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-ccccc
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~ 156 (495)
..+.|++++|.+.... ..|.+ +++|+.+.+..|.+. .+|.......+|+.|+|. ++. +..+ .+.+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~n----l~nLq~v~l~~N~Lt----~IP~f~~~sghl~~L~L~-~N~---I~sv~se~L~ 146 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYN----LPNLQEVNLNKNELT----RIPRFGHESGHLEKLDLR-HNL---ISSVTSEELS 146 (873)
T ss_pred ceeeeeccccccccCcHHHHhc----CCcceeeeeccchhh----hcccccccccceeEEeee-ccc---cccccHHHHH
Confidence 5667777777776533 33444 778888888777642 255533445567888887 655 5554 34567
Q ss_pred CcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCccccccccccccCccccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLR 234 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~ 234 (495)
.++.||+|||+.|. +.++| .++..-.++++|+|++|+ +..+. ..|..+.+|..|.|++|+++..-+..|.++++|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence 77788888888887 66665 335555678888888887 54443 3467777888888888866554455677788888
Q ss_pred ccCeEEecCccCCccCccchhcccccCCceee--ccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHh
Q 011015 235 EVTKFVVGGGYDRACSLGSLKKLNLLRKCSIR--GLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLL 312 (495)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 312 (495)
.|++..|.+.-. ....+..|++|+.+.+. .++...+ ..|..+.++++|+++.|+++ ...-
T Consensus 225 ~LdLnrN~iriv---e~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~---------~vn~ 286 (873)
T KOG4194|consen 225 SLDLNRNRIRIV---EGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRLQ---------AVNE 286 (873)
T ss_pred hhhccccceeee---hhhhhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchhh---------hhhc
Confidence 888888766531 12234444555544433 2333222 45777889999999998742 2223
Q ss_pred hcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCC
Q 011015 313 EALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGV 391 (495)
Q Consensus 313 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 391 (495)
..+..+..|+.|+++.|.+.. +.++....+++|+.|+|++|.+.+--+. +..+..|++|+|+.+. +..+....
T Consensus 287 g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a--- 360 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA--- 360 (873)
T ss_pred ccccccchhhhhccchhhhhe--eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH---
Confidence 455677889999999998887 6667777899999999999988775555 7888999999998655 22222111
Q ss_pred CCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCc-CCCCCCCccEEEEeCCcc
Q 011015 392 ESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPD-HLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 392 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~-~~~~l~~L~~L~l~~~~~ 470 (495)
..++.+|+.|+++++. +....-++ ...+..+++|++|.+.||+ ++.+|. .+..+++|+.||+.+|++
T Consensus 361 --------f~~lssL~~LdLr~N~-ls~~IEDa--a~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 361 --------FVGLSSLHKLDLRSNE-LSWCIEDA--AVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred --------HHHhhhhhhhcCcCCe-EEEEEecc--hhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 1257899999988776 44332222 2456679999999999965 777874 577899999999999976
Q ss_pred h
Q 011015 471 L 471 (495)
Q Consensus 471 l 471 (495)
.
T Consensus 429 a 429 (873)
T KOG4194|consen 429 A 429 (873)
T ss_pred e
Confidence 3
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=9.7e-28 Score=226.42 Aligned_cols=343 Identities=19% Similarity=0.159 Sum_probs=238.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
+++-|.++...+..+|..+.. +.+|+.|.+.+|++..+ ..-+..++.||.+.+. .+... -.-+|..+-.+
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~----lqkLEHLs~~HN~L~~v----hGELs~Lp~LRsv~~R-~N~LK-nsGiP~diF~l 102 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSR----LQKLEHLSMAHNQLISV----HGELSDLPRLRSVIVR-DNNLK-NSGIPTDIFRL 102 (1255)
T ss_pred heeEEEechhhhhhChHHHHH----HhhhhhhhhhhhhhHhh----hhhhccchhhHHHhhh-ccccc-cCCCCchhccc
Confidence 556666666666667776666 77777777777774322 2225566777777777 44310 12256667777
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccccC
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
..|..|||+.|. +.+.|..+..-+++-.|+|++|+ +.++|.. +-+++-|-.|||++| .+..+|+.+..+..|++|.
T Consensus 103 ~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 778888888887 77777777777777888888776 7777765 447777778888877 3467777777788888888
Q ss_pred eEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCC
Q 011015 238 KFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGP 317 (495)
Q Consensus 238 l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 317 (495)
+++|+.. ...+..++.+++|.+|++++... .....+.++..+.+|..++++.|++ ..+++.+-.
T Consensus 180 Ls~NPL~---hfQLrQLPsmtsL~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~L----------p~vPecly~ 243 (1255)
T KOG0444|consen 180 LSNNPLN---HFQLRQLPSMTSLSVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENNL----------PIVPECLYK 243 (1255)
T ss_pred cCCChhh---HHHHhcCccchhhhhhhcccccc---hhhcCCCchhhhhhhhhccccccCC----------CcchHHHhh
Confidence 8777654 34455555666666665554332 2234446677788889999998874 345667777
Q ss_pred CCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCC
Q 011015 318 PPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDG 397 (495)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 397 (495)
+++|++|++++|.+++ + ........+|+.|+++.|.++.....+..+++|+.|.+.++ .+..... .
T Consensus 244 l~~LrrLNLS~N~ite--L-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N--------kL~FeGi---P 309 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE--L-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN--------KLTFEGI---P 309 (1255)
T ss_pred hhhhheeccCcCceee--e-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC--------cccccCC---c
Confidence 8889999999988877 4 34455667889999999877764444888999999988733 2221111 1
Q ss_pred CccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcchh
Q 011015 398 SSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPILE 472 (495)
Q Consensus 398 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 472 (495)
+.++.+.+|+.+...++. | ..+|+.++.|+.|+.|.++.|. +-.+|+.+.-++.|++||+.+||++.
T Consensus 310 SGIGKL~~Levf~aanN~-L------ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNK-L------ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cchhhhhhhHHHHhhccc-c------ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCcc
Confidence 234467778888766554 3 4466788899999999998765 55788888888999999999998763
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.6e-25 Score=208.47 Aligned_cols=342 Identities=19% Similarity=0.144 Sum_probs=257.2
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~ 157 (495)
++..+.+..|.++.+|..... ..+|+.|+|.+|.+..+. .+.++.++.||+|||+ .+. +..+| .+|..
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~----sghl~~L~L~~N~I~sv~---se~L~~l~alrslDLS-rN~---is~i~~~sfp~ 171 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHE----SGHLEKLDLRHNLISSVT---SEELSALPALRSLDLS-RNL---ISEIPKPSFPA 171 (873)
T ss_pred cceeeeeccchhhhccccccc----ccceeEEeeecccccccc---HHHHHhHhhhhhhhhh-hch---hhcccCCCCCC
Confidence 889999999999988877766 778999999999954443 4568889999999999 555 77775 34666
Q ss_pred cCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccc
Q 011015 158 LIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLRE 235 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~ 235 (495)
-.++++|+|++|. ++.+. ..|..+.+|.+|.|+.|+ +..+|.. |.++++|+.|+|..|.+-..---.|..+++|+.
T Consensus 172 ~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 172 KVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 6899999999999 66554 457888999999999999 7888865 667999999999999542221344788999999
Q ss_pred cCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcC
Q 011015 236 VTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL 315 (495)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 315 (495)
|.+..|.+....+..+..+.++..|. |..+.+..+ ....+.+++.|+.|++++|.+. .--...+
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~-L~~N~l~~v------n~g~lfgLt~L~~L~lS~NaI~---------rih~d~W 313 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLN-LETNRLQAV------NEGWLFGLTSLEQLDLSYNAIQ---------RIHIDSW 313 (873)
T ss_pred hhhhhcCcccccCcceeeecccceee-cccchhhhh------hcccccccchhhhhccchhhhh---------eeecchh
Confidence 99999887764455555555555443 222333222 2355678899999999999742 2235566
Q ss_pred CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCC
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESD 394 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (495)
..+++|+.|+++.|.+.. +++..+..+..|+.|.|++|.+...-.. +..+.+|++|+|+.+..--.+.. ..+
T Consensus 314 sftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~---- 386 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAV---- 386 (873)
T ss_pred hhcccceeEecccccccc--CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chh----
Confidence 778999999999999999 8788899999999999999976654333 77899999999986652222222 111
Q ss_pred CCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeC
Q 011015 395 TDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWG 467 (495)
Q Consensus 395 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~ 467 (495)
...++++|+.|++.+++ +..++- .++..+++|+.|++.+|.+...=|..+..+ .|++|.+..
T Consensus 387 ----~f~gl~~LrkL~l~gNq-lk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 387 ----AFNGLPSLRKLRLTGNQ-LKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ----hhccchhhhheeecCce-eeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 12379999999987776 655543 467789999999999988665555666655 888887763
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=8.6e-26 Score=213.36 Aligned_cols=341 Identities=19% Similarity=0.188 Sum_probs=276.1
Q ss_pred ceEEEEEEeccCCC--cchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccccc
Q 011015 79 KVLHLMLTVDVGTS--VPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 156 (495)
-+|.+++++|.+.. +|.+... |+.++.|.+.... ..+ +|+-+..+.+|+.|.++ ++. +..+...++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~q----Mt~~~WLkLnrt~---L~~-vPeEL~~lqkLEHLs~~-HN~---L~~vhGELs 75 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQ----MTQMTWLKLNRTK---LEQ-VPEELSRLQKLEHLSMA-HNQ---LISVHGELS 75 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHH----hhheeEEEechhh---hhh-ChHHHHHHhhhhhhhhh-hhh---hHhhhhhhc
Confidence 68889999998863 5666655 9999999998876 334 88889999999999999 877 667777788
Q ss_pred CcCCcceEecCCCCcc-cccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCcccccccccc-ccCccccc
Q 011015 157 KLIHLKYLNLCGQTEI-EKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVG-IGELISLR 234 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~-i~~l~~L~ 234 (495)
.++.||.+.++.|.+- ..+|..+..+..|..|||++|. +...|..+..-+++..|+|++|.+ ..+|.. +.+++.|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHh
Confidence 9999999999999832 2589999999999999999998 899999999999999999999965 555644 67899999
Q ss_pred ccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhc
Q 011015 235 EVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEA 314 (495)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 314 (495)
.|+++.|.... ....+..|.+|+.|.+++- .........+..+++|+.|.+++.+ .....++..
T Consensus 154 fLDLS~NrLe~----LPPQ~RRL~~LqtL~Ls~N----PL~hfQLrQLPsmtsL~vLhms~Tq--------RTl~N~Pts 217 (1255)
T KOG0444|consen 154 FLDLSNNRLEM----LPPQIRRLSMLQTLKLSNN----PLNHFQLRQLPSMTSLSVLHMSNTQ--------RTLDNIPTS 217 (1255)
T ss_pred hhccccchhhh----cCHHHHHHhhhhhhhcCCC----hhhHHHHhcCccchhhhhhhccccc--------chhhcCCCc
Confidence 99999988754 5667788888888877652 2233344556677788888998876 455667888
Q ss_pred CCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCC
Q 011015 315 LGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESD 394 (495)
Q Consensus 315 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (495)
+..+.+|+.+++++|.... + |+.+-.+++|+.|+|++|.+++.--..+...+|++|+++.+. ++.++.
T Consensus 218 ld~l~NL~dvDlS~N~Lp~--v-Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~-------- 285 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPI--V-PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD-------- 285 (1255)
T ss_pred hhhhhhhhhccccccCCCc--c-hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH--------
Confidence 8888999999999999887 7 888889999999999999888755456778899999999554 222222
Q ss_pred CCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 395 TDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 395 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
.+..++.|+.|...+++ | .| ..+|..++.+.+|+++...+| .++-+|+++..|+.|+.|.++.|..+
T Consensus 286 ----avcKL~kL~kLy~n~Nk-L---~F-eGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 286 ----AVCKLTKLTKLYANNNK-L---TF-EGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred ----HHhhhHHHHHHHhccCc-c---cc-cCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee
Confidence 23478899999977665 3 34 457889999999999999985 58889999999999999999999764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.1e-25 Score=199.07 Aligned_cols=263 Identities=24% Similarity=0.228 Sum_probs=182.4
Q ss_pred CceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccC
Q 011015 78 KKVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEK 157 (495)
Q Consensus 78 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 157 (495)
..+..+.+.+|..+...+++.+ +..+.+|++++|. ..+ +|.++..+..++.|+.+ ++. +..+|..+..
T Consensus 45 v~l~~lils~N~l~~l~~dl~n----L~~l~vl~~~~n~---l~~-lp~aig~l~~l~~l~vs-~n~---ls~lp~~i~s 112 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKN----LACLTVLNVHDNK---LSQ-LPAAIGELEALKSLNVS-HNK---LSELPEQIGS 112 (565)
T ss_pred cchhhhhhccCchhhccHhhhc----ccceeEEEeccch---hhh-CCHHHHHHHHHHHhhcc-cch---HhhccHHHhh
Confidence 3667777888888777777777 8888888888887 334 66668888888888888 666 7778888888
Q ss_pred cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccC
Q 011015 158 LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
+..|+.|+.++|. ..++|++++.+..|+.|+..+|. +.++|.+++++.+|..+++.+|.. ..+|+..-+++.|++|+
T Consensus 113 ~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 113 LISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcc
Confidence 8888888888888 77788888888888888888887 778888888888888888888743 45555544577788877
Q ss_pred eEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCC-
Q 011015 238 KFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALG- 316 (495)
Q Consensus 238 l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~- 316 (495)
...|-... ....+..+..|..|.+..-.. .+...|.+|..|++++++.|.+ ..+++...
T Consensus 190 ~~~N~L~t----lP~~lg~l~~L~~LyL~~Nki------~~lPef~gcs~L~Elh~g~N~i----------~~lpae~~~ 249 (565)
T KOG0472|consen 190 CNSNLLET----LPPELGGLESLELLYLRRNKI------RFLPEFPGCSLLKELHVGENQI----------EMLPAEHLK 249 (565)
T ss_pred cchhhhhc----CChhhcchhhhHHHHhhhccc------ccCCCCCccHHHHHHHhcccHH----------HhhHHHHhc
Confidence 77665533 333444444444433322100 1112456677777777777762 22333333
Q ss_pred CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccc
Q 011015 317 PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMN 379 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (495)
.++++..|++.+|...+ + |..+..+++|++||+++|.++.-.+.++++ .|+.|.+.|++
T Consensus 250 ~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 56777777777777777 6 666667777777777777776655557777 77777776654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=3.8e-21 Score=209.92 Aligned_cols=317 Identities=21% Similarity=0.210 Sum_probs=181.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++.+.+.++....+|..+. ..+|+.|++.++.+ .. ++..+..+++|++|+++++.. +..+|. ++.+
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~-----~~~L~~L~L~~s~l---~~-L~~~~~~l~~Lk~L~Ls~~~~---l~~ip~-ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFR-----PENLVKLQMQGSKL---EK-LWDGVHSLTGLRNIDLRGSKN---LKEIPD-LSMA 656 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCC-----ccCCcEEECcCccc---cc-cccccccCCCCCEEECCCCCC---cCcCCc-cccC
Confidence 34555555554444444432 45555555555542 22 333345555566666652222 334442 4555
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|..+..+|..++.+++|+.|++++|..+..+|..+ ++++|+.|++++|.....+|.. .++|+.|++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeec
Confidence 566666666555455555555566666666666655555555443 4555666666655444444432 234555555
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCCh---hhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDA---GEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL 315 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 315 (495)
..+.+.. +.....+++|+.|.+..+...... ...........++|+.|+++.|.. ...++..+
T Consensus 733 ~~n~i~~-----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~---------l~~lP~si 798 (1153)
T PLN03210 733 DETAIEE-----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS---------LVELPSSI 798 (1153)
T ss_pred CCCcccc-----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC---------ccccChhh
Confidence 5444321 111112344444444332211000 000001122346888999988752 23356677
Q ss_pred CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCC
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDT 395 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 395 (495)
..+++|+.|++++|.... .+ |..+ .+++|+.|++++|.....+|.+ .++|+.|+++++. ++.++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~-~L-P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~--------- 863 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLE-TL-PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPW--------- 863 (1153)
T ss_pred hCCCCCCEEECCCCCCcC-ee-CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChH---------
Confidence 889999999999876443 15 4444 7899999999999877766653 3689999998543 332222
Q ss_pred CCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCC
Q 011015 396 DGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKAL 450 (495)
Q Consensus 396 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l 450 (495)
++..+++|+.|++++|++|..++. .+..+++|+.+++++|..+..+
T Consensus 864 ---si~~l~~L~~L~L~~C~~L~~l~~------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 864 ---WIEKFSNLSFLDMNGCNNLQRVSL------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ---HHhcCCCCCEEECCCCCCcCccCc------ccccccCCCeeecCCCcccccc
Confidence 233689999999999998876553 4567889999999999877644
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=3.9e-22 Score=179.35 Aligned_cols=314 Identities=22% Similarity=0.172 Sum_probs=162.5
Q ss_pred hHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhh-ccccCcEeecCCCcCCcccchhh
Q 011015 125 PQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLC-ELYNLECLNVSGCWNLRELPRGI 203 (495)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~lp~~l 203 (495)
|+.++.+..|.-|++. .+. +..+| .|.++..|..|+++.|. ++.+|.... .++++..||+++|. +++.|.++
T Consensus 199 P~~lg~l~~L~~LyL~-~Nk---i~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~ 271 (565)
T KOG0472|consen 199 PPELGGLESLELLYLR-RNK---IRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI 271 (565)
T ss_pred ChhhcchhhhHHHHhh-hcc---cccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHH
Confidence 3334444444444444 333 33344 34444444445544444 445554444 56667777777776 66677777
Q ss_pred ccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCc--cchhcccccCC-ceeeccCCCC-------C
Q 011015 204 GKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSL--GSLKKLNLLRK-CSIRGLGGVS-------D 273 (495)
Q Consensus 204 ~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~~-l~~~~~~~~~-------~ 273 (495)
..+.+|.+||+++|. ...+|..++++ .|+.|-+.+|+..+--...+ +.-.-++-|+. ..-.+.+... .
T Consensus 272 clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 272 CLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 777777777777764 34566666666 66666666655432000000 00000111111 0000000000 0
Q ss_pred hhhhHhhccccccccceEEEEEecCCCCCC-cc---------------chhHHHhhcCCCCCCcceEEEeeecCcCCCCC
Q 011015 274 AGEVRRAELEKQKYLVELGLYFDQAGRREN-EE---------------DEDERLLEALGPPPNLKKLEIYDYRGRRNVVP 337 (495)
Q Consensus 274 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~---------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 337 (495)
.............+.+.|+++.-+++.... ++ ....++++.+..+..+.+.-+..+.... ++
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is--fv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS--FV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc--cc
Confidence 000111112223344445544443322100 00 0012333333333333222222233333 54
Q ss_pred CchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccc
Q 011015 338 INWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKE 416 (495)
Q Consensus 338 ~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 416 (495)
|..+..+++|..|++++| +..++|. .+.+..|++|+++.+ .|..... .......|+.+-.+++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N--------rFr~lP~-----~~y~lq~lEtllas~nq- 492 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN--------RFRMLPE-----CLYELQTLETLLASNNQ- 492 (565)
T ss_pred hHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc--------ccccchH-----HHhhHHHHHHHHhcccc-
Confidence 777888999999999988 4445665 888889999999843 3322110 11123344444433333
Q ss_pred ccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 417 LEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 417 l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+..++- ..+.+|.+|.+|++.+|. +..+|+.++++++|++|+++|||.
T Consensus 493 i~~vd~-----~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 493 IGSVDP-----SGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccCh-----HHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 433332 247899999999999854 778999999999999999999986
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-20 Score=185.93 Aligned_cols=88 Identities=26% Similarity=0.378 Sum_probs=64.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
+++++++++|....+|..+.. +.+|+.|.++.|.+. . +|.....+.+|++|+|. ++. ...+|..+..+
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~----l~~L~~ln~s~n~i~---~-vp~s~~~~~~l~~lnL~-~n~---l~~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITL----LSHLRQLNLSRNYIR---S-VPSSCSNMRNLQYLNLK-NNR---LQSLPASISEL 113 (1081)
T ss_pred eeEEeeccccccccCCchhhh----HHHHhhcccchhhHh---h-Cchhhhhhhcchhheec-cch---hhcCchhHHhh
Confidence 577888888888777777776 788888888887742 2 55667778888888887 666 77777778888
Q ss_pred CCcceEecCCCCcccccchhh
Q 011015 159 IHLKYLNLCGQTEIEKLPETL 179 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~ 179 (495)
++|++|++++|. .+.+|..+
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i 133 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVI 133 (1081)
T ss_pred hcccccccchhc-cCCCchhH
Confidence 888888888877 55555433
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2.9e-18 Score=169.87 Aligned_cols=340 Identities=22% Similarity=0.208 Sum_probs=183.8
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcC
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLI 159 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~ 159 (495)
+.++++..|..-.-|..+.. ++-+|++|++++|.. .. +|..+..+.+|+.|+++ .+. +..+|.+...+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~---~~v~L~~l~lsnn~~---~~-fp~~it~l~~L~~ln~s-~n~---i~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVE---KRVKLKSLDLSNNQI---SS-FPIQITLLSHLRQLNLS-RNY---IRSVPSSCSNMR 91 (1081)
T ss_pred HHhhhccccccccCchHHhh---heeeeEEeecccccc---cc-CCchhhhHHHHhhcccc-hhh---HhhCchhhhhhh
Confidence 44555555555433433322 245588888888873 23 55557778888888888 655 777787788888
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccc-------------------c
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSC-------------------L 220 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~-------------------~ 220 (495)
+|++|.|.+|. ...+|.++..+++|++|++++|. ....|.-+..+..+..+..++|.. .
T Consensus 92 ~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 92 NLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG 169 (1081)
T ss_pred cchhheeccch-hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence 88888888887 77888888888888888888887 666666665555555555555522 2
Q ss_pred ccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCC
Q 011015 221 RYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGR 300 (495)
Q Consensus 221 ~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 300 (495)
..++.++..++. .|++..|... ...+..+.+|+.+....-.... .-..-++++.|+...|.+.
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~------~~dls~~~~l~~l~c~rn~ls~--------l~~~g~~l~~L~a~~n~l~- 232 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME------VLDLSNLANLEVLHCERNQLSE--------LEISGPSLTALYADHNPLT- 232 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh------hhhhhhccchhhhhhhhcccce--------EEecCcchheeeeccCcce-
Confidence 222222222222 2333333221 1112222222222111100000 0001133444444444321
Q ss_pred CCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCC--------------------
Q 011015 301 RENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEH-------------------- 360 (495)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------- 360 (495)
....-....+|++++++.+.+.. + |+|+..+.+|+.+...+|.++..
T Consensus 233 ----------~~~~~p~p~nl~~~dis~n~l~~--l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 233 ----------TLDVHPVPLNLQYLDISHNNLSN--L-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred ----------eeccccccccceeeecchhhhhc--c-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh
Confidence 01111223467777777777777 7 57777777777777777765332
Q ss_pred ---CCCCCCCCccceeeccccccceEeCccccCCC--------------CCCCCCccccCCccceeeecccccccccccc
Q 011015 361 ---LPPLGKLPSLEYLVIELMNSVKRVGNEFLGVE--------------SDTDGSSVIAFPKLKLLDFYIMKELEEWDFG 423 (495)
Q Consensus 361 ---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 423 (495)
.|...++..|++|+|..+. +...+..+.... +.........++.|+.|.+.++. |++.++
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~- 376 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCF- 376 (1081)
T ss_pred hhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccch-
Confidence 1223445556666664332 222111110000 00000011134455666644444 443333
Q ss_pred cccccccccCcccceeeecCCcCccCCCc-CCCCCCCccEEEEeCCcc
Q 011015 424 TAIKGEIIIMPRLSSLSIDGCPKLKALPD-HLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 424 ~~l~~~~~~~~~L~~L~l~~c~~~~~l~~-~~~~l~~L~~L~l~~~~~ 470 (495)
+.+..++.|+.|++++|. +..+|. .+.+++.|++|+++||+.
T Consensus 377 ----p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 377 ----PVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred ----hhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchh
Confidence 456678888888888864 556664 467788888888888865
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=4.5e-15 Score=151.38 Aligned_cols=115 Identities=21% Similarity=0.185 Sum_probs=71.9
Q ss_pred CCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhcccc
Q 011015 105 RRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYN 184 (495)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 184 (495)
..-..|+++.+.+. . +|..+. ++|+.|++. ++. +..+|. ..++|++|++++|. +..+|.. .++
T Consensus 201 ~~~~~LdLs~~~Lt---s-LP~~l~--~~L~~L~L~-~N~---Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLT---T-LPDCLP--AHITTLVIP-DNN---LTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPG 263 (788)
T ss_pred CCCcEEEcCCCCCC---c-CCcchh--cCCCEEEcc-CCc---CCCCCC---CCCCCcEEEecCCc-cCcccCc---ccc
Confidence 44567777777643 2 444343 367778887 555 555653 24678888888877 6666642 357
Q ss_pred CcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCc
Q 011015 185 LECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
|+.|++++|. +..+|.. .++|+.|++++|.+ ..+|.. .++|+.|++++|.+.
T Consensus 264 L~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~L-t~LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 264 LLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred cceeeccCCc-hhhhhhc---hhhcCEEECcCCcc-cccccc---ccccceeECCCCccc
Confidence 7788888776 5566642 25577777877743 344542 356777777766554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=2.6e-14 Score=145.92 Aligned_cols=262 Identities=21% Similarity=0.169 Sum_probs=174.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.-..+++..+.+..+|..+. ++|+.|++.+|.+.. +|. ..++|++|+++ +|. +..+|.. .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~------~~L~~L~L~~N~Lt~----LP~---lp~~Lk~LdLs-~N~---LtsLP~l---p 261 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP------AHITTLVIPDNNLTS----LPA---LPPELRTLEVS-GNQ---LTSLPVL---P 261 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh------cCCCEEEccCCcCCC----CCC---CCCCCcEEEec-CCc---cCcccCc---c
Confidence 34578888888887776553 478999999998543 443 25789999999 676 6667642 4
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|+.|++++|. +..+|.. ..+|+.|++++|. +..+|.. +++|+.|++++|.+. .+|... .+|+.|.+
T Consensus 262 ~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~L 329 (788)
T PRK15387 262 PGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWA 329 (788)
T ss_pred cccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccc-cCCCCc---cccccccc
Confidence 789999999998 7777753 3578899999998 7778753 578999999999554 455422 34666666
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP 318 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (495)
.+|.+.. ++.+ ..+|+.|++++|.++. ++. ..
T Consensus 330 s~N~L~~--------LP~l---------------------------p~~Lq~LdLS~N~Ls~----------LP~---lp 361 (788)
T PRK15387 330 YNNQLTS--------LPTL---------------------------PSGLQELSVSDNQLAS----------LPT---LP 361 (788)
T ss_pred ccCcccc--------cccc---------------------------ccccceEecCCCccCC----------CCC---CC
Confidence 5544321 0000 1367788888877432 111 13
Q ss_pred CCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGS 398 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 398 (495)
++|+.|++++|.+.. + |.. ..+|+.|++++|.+.. +|.. .++|+.|+++++. ++.++.
T Consensus 362 ~~L~~L~Ls~N~L~~--L-P~l---~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~-LssIP~------------ 419 (788)
T PRK15387 362 SELYKLWAYNNRLTS--L-PAL---PSGLKELIVSGNRLTS-LPVL--PSELKELMVSGNR-LTSLPM------------ 419 (788)
T ss_pred cccceehhhcccccc--C-ccc---ccccceEEecCCcccC-CCCc--ccCCCEEEccCCc-CCCCCc------------
Confidence 567888888877766 6 332 3578888888887664 4432 3578888888554 221111
Q ss_pred ccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCc
Q 011015 399 SVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPD 452 (495)
Q Consensus 399 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~ 452 (495)
...+|+.|+++++. ++ .+|..+..+++|+.|++++|+.....+.
T Consensus 420 ---l~~~L~~L~Ls~Nq-Lt------~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 420 ---LPSGLLSLSVYRNQ-LT------RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ---chhhhhhhhhccCc-cc------ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 23467777766654 43 4566777888888888888876655443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.5e-14 Score=148.53 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=67.8
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcC
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLI 159 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~ 159 (495)
...+.+.++.++.+|..+ .+.|+.|++++|.+. . +|..+ ..+|++|+++ +|. +..+|..+. .
T Consensus 180 ~~~L~L~~~~LtsLP~~I------p~~L~~L~Ls~N~Lt---s-LP~~l--~~nL~~L~Ls-~N~---LtsLP~~l~--~ 241 (754)
T PRK15370 180 KTELRLKILGLTTIPACI------PEQITTLILDNNELK---S-LPENL--QGNIKTLYAN-SNQ---LTSIPATLP--D 241 (754)
T ss_pred ceEEEeCCCCcCcCCccc------ccCCcEEEecCCCCC---c-CChhh--ccCCCEEECC-CCc---cccCChhhh--c
Confidence 445555555555444433 234566666666532 2 33322 2356666666 444 444554332 3
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
+|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+ ..+|..+. ++|+.|++.
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhc
Confidence 56666666666 445555443 356666666555 445554432 3566666666633 23443332 245555554
Q ss_pred Eec
Q 011015 240 VVG 242 (495)
Q Consensus 240 ~~~ 242 (495)
.|.
T Consensus 313 ~N~ 315 (754)
T PRK15370 313 SNS 315 (754)
T ss_pred CCc
Confidence 443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=3.9e-16 Score=124.79 Aligned_cols=153 Identities=25% Similarity=0.295 Sum_probs=132.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.+.++.++.|.+..+|..+.. +.+|++|++++|. +++ +|..++.++.||.|++. -+. ...+|..|+.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~----l~nlevln~~nnq---ie~-lp~~issl~klr~lnvg-mnr---l~~lprgfgs~ 101 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSNNQ---IEE-LPTSISSLPKLRILNVG-MNR---LNILPRGFGSF 101 (264)
T ss_pred hhhhhhcccCceeecCCcHHH----hhhhhhhhcccch---hhh-cChhhhhchhhhheecc-hhh---hhcCccccCCC
Confidence 688999999999988988888 9999999999998 444 77779999999999998 777 77789999999
Q ss_pred CCcceEecCCCCccc-ccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccC
Q 011015 159 IHLKYLNLCGQTEIE-KLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
+.|+.||+.+|++.+ .+|..|..+..|+.|.+++|. .+.+|..++++++|+.|.+..|.+ -++|.+++.+++|++|+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHh
Confidence 999999999998544 578888888899999999997 888999999999999999999854 57899999999999999
Q ss_pred eEEecCcc
Q 011015 238 KFVVGGGY 245 (495)
Q Consensus 238 l~~~~~~~ 245 (495)
+.+|....
T Consensus 180 iqgnrl~v 187 (264)
T KOG0617|consen 180 IQGNRLTV 187 (264)
T ss_pred cccceeee
Confidence 88876643
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.1e-15 Score=145.45 Aligned_cols=277 Identities=21% Similarity=0.118 Sum_probs=146.1
Q ss_pred ccccccCcCCcceEecCCCCccc----ccchhhhccccCcEeecCCCcCC------cccchhhccCCcccEEecCCcccc
Q 011015 151 IPKNIEKLIHLKYLNLCGQTEIE----KLPETLCELYNLECLNVSGCWNL------RELPRGIGKLRKLMYLYNEGTSCL 220 (495)
Q Consensus 151 l~~~~~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~~------~~lp~~l~~l~~L~~L~L~~~~~~ 220 (495)
....+..+.+|++|+++++.+.. .++..+...+.|++|+++++... ..++..+..+++|+.|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34446667789999999988322 35555667778999999887632 113345667788888888888665
Q ss_pred ccccccccCccc---ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccc-cccceEEEEEe
Q 011015 221 RYLPVGIGELIS---LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQ-KYLVELGLYFD 296 (495)
Q Consensus 221 ~~~~~~i~~l~~---L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 296 (495)
...+..+..+.+ |++|+++.+.... .........+..+ ++|+.|++++|
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~---------------------------~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGD---------------------------RGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccch---------------------------HHHHHHHHHHHhCCCCceEEEcCCC
Confidence 444444433333 6666665544321 1111111223334 56777777777
Q ss_pred cCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCC--CchhhhccccceeeecCccCCCCC----CC-CCCCCc
Q 011015 297 QAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVP--INWIMSLTNLRDLSLSKWRNCEHL----PP-LGKLPS 369 (495)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~----~~-~~~l~~ 369 (495)
.++. .....+...+..+++|++|++++|.+....++ +..+..+++|++|++++|.+.+.. +. +..+++
T Consensus 148 ~l~~-----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 148 RLEG-----ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred cCCc-----hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 6432 12223444455556677777777665431110 112233457777777777554321 11 445667
Q ss_pred cceeeccccccceEeCc-cccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCcc
Q 011015 370 LEYLVIELMNSVKRVGN-EFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLK 448 (495)
Q Consensus 370 L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 448 (495)
|++|++++|. ++.... .+.... ....+.|+.|++++|. +++... ..++..+..+++|+++++++|....
T Consensus 223 L~~L~ls~n~-l~~~~~~~l~~~~-------~~~~~~L~~L~l~~n~-i~~~~~-~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 223 LEVLNLGDNN-LTDAGAAALASAL-------LSPNISLLTLSLSCND-ITDDGA-KDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCEEecCCCc-CchHHHHHHHHHH-------hccCCCceEEEccCCC-CCcHHH-HHHHHHHhcCCCccEEECCCCCCcH
Confidence 7777777654 111000 000000 0023567777766664 432221 2222334445667777777766543
Q ss_pred C----CCcCCCCC-CCccEEEEeCCc
Q 011015 449 A----LPDHLLQK-TTLQKLWIWGCP 469 (495)
Q Consensus 449 ~----l~~~~~~l-~~L~~L~l~~~~ 469 (495)
. +...+... +.|+++++.++|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2 22223333 566777766665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-15 Score=138.03 Aligned_cols=149 Identities=19% Similarity=0.138 Sum_probs=110.3
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCC
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIH 160 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~ 160 (495)
.++-.+.++.++|..+.. ....+.|..|. +....|.+|+.+++||.|||+ ++. +..+ |+.|.+++.
T Consensus 50 ~VdCr~~GL~eVP~~LP~------~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS-~N~---Is~I~p~AF~GL~~ 116 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPP------ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLS-KNN---ISFIAPDAFKGLAS 116 (498)
T ss_pred eEEccCCCcccCcccCCC------cceEEEeccCC---cccCChhhccchhhhceeccc-ccc---hhhcChHhhhhhHh
Confidence 344455666667777654 55678888887 455567788999999999999 777 6665 788899988
Q ss_pred cceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccc-cccCcccccccCe
Q 011015 161 LKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPV-GIGELISLREVTK 238 (495)
Q Consensus 161 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~-~i~~l~~L~~L~l 238 (495)
|..|-+.+++.+..+|. .|.+|..|+.|.+..|.........+..+++|..|.+..|.+ ..++. .+..+..++++.+
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhh
Confidence 88887777433888884 577888999999888874445556688899999998888844 44554 5778888888888
Q ss_pred EEecCc
Q 011015 239 FVVGGG 244 (495)
Q Consensus 239 ~~~~~~ 244 (495)
..+.+.
T Consensus 196 A~np~i 201 (498)
T KOG4237|consen 196 AQNPFI 201 (498)
T ss_pred hcCccc
Confidence 776544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.3e-14 Score=145.20 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=60.2
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccC
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNL 185 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 185 (495)
+...|+++++.+.. +|..+ .+.|+.|+++ ++. +..+|..+. .+|++|++++|. +..+|..+. .+|
T Consensus 179 ~~~~L~L~~~~Lts----LP~~I--p~~L~~L~Ls-~N~---LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTT----IPACI--PEQITTLILD-NNE---LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCCCCcCc----CCccc--ccCCcEEEec-CCC---CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 34556666655322 23222 1346666666 444 445554432 466666666665 555554332 356
Q ss_pred cEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEec
Q 011015 186 ECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVG 242 (495)
Q Consensus 186 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~ 242 (495)
+.|++++|. +..+|..+. .+|+.|++++|.+ ..+|..+. ++|+.|++++|.
T Consensus 244 ~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 244 QEMELSINR-ITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred cEEECcCCc-cCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc
Confidence 666666665 455555443 3566666666643 24454433 355555555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.8e-15 Score=142.67 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=55.7
Q ss_pred CCCccEEEEcCCccCccc-ccchHHhhcCCeeeEEEccCccCcc----ccccccccccCcCCcceEecCCCCcccccchh
Q 011015 104 MRRLRSLLVEGGDYSWSS-KVLPQLFDKLTCLRALTLETHCCFD----FIQKIPKNIEKLIHLKYLNLCGQTEIEKLPET 178 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~----~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (495)
++.|+.|++.++.+.... ..++..+...+.|+.|+++ .+... ....++..+..+++|++|++++|......+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-ccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 556677777666632111 1234445555666666666 33210 00112334455566666666666633333434
Q ss_pred hhcccc---CcEeecCCCcCCc----ccchhhccC-CcccEEecCCccc
Q 011015 179 LCELYN---LECLNVSGCWNLR----ELPRGIGKL-RKLMYLYNEGTSC 219 (495)
Q Consensus 179 ~~~l~~---L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~L~~~~~ 219 (495)
+..+.. |++|++++|+... .+...+..+ ++|+.|++++|.+
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 444433 6666666665221 122233444 5666666666643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=6.5e-16 Score=123.51 Aligned_cols=49 Identities=27% Similarity=0.208 Sum_probs=27.8
Q ss_pred hhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC
Q 011015 312 LEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP 363 (495)
Q Consensus 312 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 363 (495)
+..++.+.+|+.|.+.+|...+ + |..++.++.|+.|++.+|.+....|.
T Consensus 143 p~dvg~lt~lqil~lrdndll~--l-pkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLS--L-PKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred ChhhhhhcceeEEeeccCchhh--C-cHHHHHHHHHHHHhcccceeeecChh
Confidence 3344444555555555555555 5 56666666677777766655544433
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=7.4e-15 Score=132.64 Aligned_cols=275 Identities=19% Similarity=0.131 Sum_probs=180.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccc-ccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN-IEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~-~~~ 157 (495)
....+.+..|.+..+|...++ .+++||.|+|++|. +..+-|++|+.++.|-.|-+.+++. +.++|+. |.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~---~l~~LRrLdLS~N~---Is~I~p~AF~GL~~l~~Lvlyg~Nk---I~~l~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFK---TLHRLRRLDLSKNN---ISFIAPDAFKGLASLLSLVLYGNNK---ITDLPKGAFGG 138 (498)
T ss_pred cceEEEeccCCcccCChhhcc---chhhhceecccccc---hhhcChHhhhhhHhhhHHHhhcCCc---hhhhhhhHhhh
Confidence 678899999999998866544 49999999999999 5566699999999999988875677 8888754 899
Q ss_pred cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccccc------------ccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLR------------YLP 224 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~------------~~~ 224 (495)
+..|+.|.+.-|++.......+..+++|..|.+.+|. +..++. .+..+..++.+.+..|.+.. ..|
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 9999999999999555556778899999999999997 777776 57888999999888775321 011
Q ss_pred ccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCc
Q 011015 225 VGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENE 304 (495)
Q Consensus 225 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 304 (495)
-.++...-..-..+....+...... .-...+..++.-....+ ......+...+.++++|++|++++|.++.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~--kf~c~~esl~s~~~~~d---~~d~~cP~~cf~~L~~L~~lnlsnN~i~~---- 288 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDAR--KFLCSLESLPSRLSSED---FPDSICPAKCFKKLPNLRKLNLSNNKITR---- 288 (498)
T ss_pred hhcccceecchHHHHHHHhcccchh--hhhhhHHhHHHhhcccc---CcCCcChHHHHhhcccceEeccCCCccch----
Confidence 1111111111111111111100000 00000111110000000 01112233457888889999998887532
Q ss_pred cchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccc
Q 011015 305 EDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMN 379 (495)
Q Consensus 305 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 379 (495)
.-..++.....++.|.+..|.... +....|..+..|+.|+|.+|.++...|. +..+..|.+|++-.++
T Consensus 289 -----i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 -----IEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -----hhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 223345556778888888887665 4334566788888888888888876666 7777888888875443
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-13 Score=142.21 Aligned_cols=323 Identities=25% Similarity=0.304 Sum_probs=210.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
....|...+.+|.+..+. . -...+.|++|-+.++.. ....+ ...|..++.|++|||++|...+.+|..++.+
T Consensus 522 ~~~~rr~s~~~~~~~~~~----~-~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA----G-SSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhcc----C-CCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 567788888888743322 2 23445799988883321 03333 3458889999999999998789999999999
Q ss_pred ccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCC
Q 011015 183 YNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRK 262 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 262 (495)
-+|++|+++++. +..+|.+++++.+|.+|++..+......|.....+++|+.|.+...... .....+..+..+.+|+.
T Consensus 595 i~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 595 VHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhh
Confidence 999999999998 8899999999999999999998766666666677999999999876522 12456677777888887
Q ss_pred ceeeccCCCCChhhhHhhccccccccc----eEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCC
Q 011015 263 CSIRGLGGVSDAGEVRRAELEKQKYLV----ELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPI 338 (495)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 338 (495)
+.....+. .. ...+..+..|. .+.+.++ ........+..+.+|+.|.+.++...+ ...
T Consensus 673 ls~~~~s~-~~-----~e~l~~~~~L~~~~~~l~~~~~----------~~~~~~~~~~~l~~L~~L~i~~~~~~e--~~~ 734 (889)
T KOG4658|consen 673 LSITISSV-LL-----LEDLLGMTRLRSLLQSLSIEGC----------SKRTLISSLGSLGNLEELSILDCGISE--IVI 734 (889)
T ss_pred heeecchh-Hh-----HhhhhhhHHHHHHhHhhhhccc----------ccceeecccccccCcceEEEEcCCCch--hhc
Confidence 77654332 00 01112222222 2222111 123345566678899999999988764 212
Q ss_pred chhh-----h-ccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCcccee-ee
Q 011015 339 NWIM-----S-LTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLL-DF 411 (495)
Q Consensus 339 ~~~~-----~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l 411 (495)
.|.. . ++++..+.+.+|....++.+....|+|+.|.+..|..++.+.+......... ..+..|+++..+ .+
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~--~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK--ELILPFNKLEGLRML 812 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc--cEEecccccccceee
Confidence 2311 2 5677777777887777776666789999999999988776554332221100 012245555555 34
Q ss_pred cccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCC
Q 011015 412 YIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGC 468 (495)
Q Consensus 412 ~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~ 468 (495)
.+.+.+..+..... .++.|+.+.+..|+.+..+| .+.++.+.+|
T Consensus 813 ~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPL------SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred ecCCCCceeEeccc------CccchhheehhcCcccccCc-------cccccceecc
Confidence 44433333322111 34558888888877666554 5555666665
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=1.6e-12 Score=118.67 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=108.4
Q ss_pred HhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC---CCCCCccceeeccccccceEeCcc
Q 011015 311 LLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP---LGKLPSLEYLVIELMNSVKRVGNE 387 (495)
Q Consensus 311 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~ 387 (495)
+...-..+..|+.|..+++...++..-.....++.+|+.+.++.|+...+... -.+.+.|+.+++.+|..+.+- .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 33344456677778777766544222011223778888888888875544332 346788888888887755432 1
Q ss_pred ccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccC-CCcCCCCCCCccEEEEe
Q 011015 388 FLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKA-LPDHLLQKTTLQKLWIW 466 (495)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~-l~~~~~~l~~L~~L~l~ 466 (495)
+.... .+++.|+.|.+++|..+++-.+ ..+...-.++..|+.+.+++|+.+.+ ..+.+..+++|+.+++.
T Consensus 364 L~sls--------~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 364 LASLS--------RNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred Hhhhc--------cCCchhccCChhhhhhhhhhhh-hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 22222 2789999999999987766532 11112334678899999999987764 44567788999999999
Q ss_pred CCcchhHhhhccCCCCCCCCCCCCcccc
Q 011015 467 GCPILEERCRKETGEDWPLIRHIPKISI 494 (495)
Q Consensus 467 ~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 494 (495)
+|..+.+...... .+|+|.+++
T Consensus 435 ~~q~vtk~~i~~~------~~~lp~i~v 456 (483)
T KOG4341|consen 435 DCQDVTKEAISRF------ATHLPNIKV 456 (483)
T ss_pred chhhhhhhhhHHH------HhhCcccee
Confidence 9998877665543 355555544
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=7.2e-11 Score=105.70 Aligned_cols=209 Identities=18% Similarity=0.097 Sum_probs=113.3
Q ss_pred ccCCcccEEecCCcccccccccc----ccCcccccccCeEEecCccCCccCcc-chhcccccCCceeeccCCCCChhhhH
Q 011015 204 GKLRKLMYLYNEGTSCLRYLPVG----IGELISLREVTKFVVGGGYDRACSLG-SLKKLNLLRKCSIRGLGGVSDAGEVR 278 (495)
Q Consensus 204 ~~l~~L~~L~L~~~~~~~~~~~~----i~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~l~~L~~l~~~~~~~~~~~~~~~ 278 (495)
-.+++|++|+||.|.+-...++. +.+++.|++|++.+|......+..+. .+..|. .
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------------------~ 149 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------------------V 149 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-------------------H
Confidence 34556777777776543333322 45677777777777665431111111 111111 0
Q ss_pred hhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCC--CCchhhhccccceeeecCcc
Q 011015 279 RAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVV--PINWIMSLTNLRDLSLSKWR 356 (495)
Q Consensus 279 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~ 356 (495)
......-+.|+++....|.+.+ .....+-..+..++.|+.+.++.|.+....+ -...+.++++|+.|++++|.
T Consensus 150 ~kk~~~~~~Lrv~i~~rNrlen-----~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 150 NKKAASKPKLRVFICGRNRLEN-----GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HhccCCCcceEEEEeecccccc-----ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 1123344678888888887643 2334445556667889999998887654111 01235588999999999997
Q ss_pred CCCCCCC-----CCCCCccceeeccccccceEeCcc-ccCCCCCCCCCccccCCccceeeeccccccccccccccccccc
Q 011015 357 NCEHLPP-----LGKLPSLEYLVIELMNSVKRVGNE-FLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEI 430 (495)
Q Consensus 357 ~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~ 430 (495)
++..... +..+|+|+.|++.+|. ++.-+.. +.... -...|+|+.|.+.+|. ++.-.. ..+...+
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al-------~~~~p~L~vl~l~gNe-It~da~-~~la~~~ 294 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDAL-------KESAPSLEVLELAGNE-ITRDAA-LALAACM 294 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHH-------hccCCCCceeccCcch-hHHHHH-HHHHHHH
Confidence 7753321 5677788888888775 2211110 00000 0135677777765554 222110 1111233
Q ss_pred ccCcccceeeecCCcC
Q 011015 431 IIMPRLSSLSIDGCPK 446 (495)
Q Consensus 431 ~~~~~L~~L~l~~c~~ 446 (495)
...|.|++|+|++|..
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 4466777777777654
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.9e-10 Score=103.07 Aligned_cols=240 Identities=20% Similarity=0.146 Sum_probs=130.9
Q ss_pred CCCccEEEEcCCccCcc-cccchHHhhcCCeeeEEEccCccCccccccccc-------cccCcCCcceEecCCCCccc-c
Q 011015 104 MRRLRSLLVEGGDYSWS-SKVLPQLFDKLTCLRALTLETHCCFDFIQKIPK-------NIEKLIHLKYLNLCGQTEIE-K 174 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-------~~~~l~~L~~L~l~~~~~~~-~ 174 (495)
+..+..+++++|.+..- ...+...+...+.||..++++-.......++|. .+-.+++|++|+||.|. ++ .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cCcc
Confidence 66777777777765211 123445566667777777763221111222332 23345677777777776 33 2
Q ss_pred cc----hhhhccccCcEeecCCCcCCcccch--------------hhccCCcccEEecCCccccc----cccccccCccc
Q 011015 175 LP----ETLCELYNLECLNVSGCWNLRELPR--------------GIGKLRKLMYLYNEGTSCLR----YLPVGIGELIS 232 (495)
Q Consensus 175 lp----~~~~~l~~L~~L~L~~~~~~~~lp~--------------~l~~l~~L~~L~L~~~~~~~----~~~~~i~~l~~ 232 (495)
.+ .-+..+..|++|.|.+|. ++.... ..+.-++|+.+..++|++-. .+...+..++.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 22 234566777777777776 433211 12334567777666664321 12223445556
Q ss_pred ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHh
Q 011015 233 LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLL 312 (495)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 312 (495)
|+.+.+..|.+.. .........+..|+.|+.|++..|-++. .....+-
T Consensus 187 leevr~~qN~I~~---------------------------eG~~al~eal~~~~~LevLdl~DNtft~-----egs~~La 234 (382)
T KOG1909|consen 187 LEEVRLSQNGIRP---------------------------EGVTALAEALEHCPHLEVLDLRDNTFTL-----EGSVALA 234 (382)
T ss_pred cceEEEecccccC---------------------------chhHHHHHHHHhCCcceeeecccchhhh-----HHHHHHH
Confidence 6666665554432 1112334445566677777777666542 2233444
Q ss_pred hcCCCCCCcceEEEeeecCcCCCCCCchhh-----hccccceeeecCccCCCCCCC-----CCCCCccceeeccccc
Q 011015 313 EALGPPPNLKKLEIYDYRGRRNVVPINWIM-----SLTNLRDLSLSKWRNCEHLPP-----LGKLPSLEYLVIELMN 379 (495)
Q Consensus 313 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~ 379 (495)
..+..+++|+.|++++|...... ...+. ..++|+.|.+.+|.++.+-.. ....|.|+.|+|++|.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~G--a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEG--AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeeccccccccccc--HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 55566667777777777654411 11111 456777777777766642211 4457888888888665
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=9.1e-10 Score=92.41 Aligned_cols=125 Identities=28% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCCccEEEEcCCccCcccccchHHhh-cCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhh-hc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFD-KLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETL-CE 181 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~ 181 (495)
+.+++.|++.+|.+..++. +. .+.+|++|+++ +|. +..+. .+..++.|+.|++++|. +..+++.+ ..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls-~N~---I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLS-NNQ---ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKN 86 (175)
T ss_dssp ------------------S-------TT-TT--EEE-T-TS-----S--T-T----TT--EEE--SS----S-CHHHHHH
T ss_pred ccccccccccccccccccc-----hhhhhcCCCEEECC-CCC---Ccccc-CccChhhhhhcccCCCC-CCccccchHHh
Confidence 5567888888887654443 33 46778888888 766 66654 46678888888888888 66665544 35
Q ss_pred cccCcEeecCCCcCCcccc--hhhccCCcccEEecCCcccccccc---ccccCcccccccCeEE
Q 011015 182 LYNLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSCLRYLP---VGIGELISLREVTKFV 240 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~~~---~~i~~l~~L~~L~l~~ 240 (495)
+++|++|++++|. +..+. ..+..+++|+.|++.+|.....-- ..+..+++|+.|+...
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 7888888888887 44432 345678888888888886543211 1245566666665543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=1.1e-09 Score=91.87 Aligned_cols=122 Identities=24% Similarity=0.254 Sum_probs=52.0
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccc-cC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNI-EK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~-~~ 157 (495)
..+.|++.++.+..+. .+.. .+.+|+.|++++|.+..+.+ +..++.|++|+++ ++. +..+...+ ..
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~---~l~~L~~L~Ls~N~I~~l~~-----l~~L~~L~~L~L~-~N~---I~~i~~~l~~~ 86 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGA---TLDKLEVLDLSNNQITKLEG-----LPGLPRLKTLDLS-NNR---ISSISEGLDKN 86 (175)
T ss_dssp -----------------S--T---T-TT--EEE-TTS--S--TT---------TT--EEE---SS------S-CHHHHHH
T ss_pred cccccccccccccccc-chhh---hhcCCCEEECCCCCCccccC-----ccChhhhhhcccC-CCC---CCccccchHHh
Confidence 6789999999998654 3331 28899999999999765554 7789999999999 777 77775544 46
Q ss_pred cCCcceEecCCCCcccccc--hhhhccccCcEeecCCCcCCcccch----hhccCCcccEEecC
Q 011015 158 LIHLKYLNLCGQTEIEKLP--ETLCELYNLECLNVSGCWNLRELPR----GIGKLRKLMYLYNE 215 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~L~ 215 (495)
+++|++|.+++|. +..+. ..+..+++|+.|++.+|+ +...+. .+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence 8999999999999 55443 347789999999999998 544332 36789999999753
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.8e-10 Score=102.00 Aligned_cols=157 Identities=17% Similarity=0.067 Sum_probs=103.3
Q ss_pred ceEEEEEEeccCCCcch--hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccc--
Q 011015 79 KVLHLMLTVDVGTSVPI--AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN-- 154 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~-- 154 (495)
+++.+++.+......+. .... |++++.|+|+.|-+.++.. +..+...+++|+.|+++ .+. .....++
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~----~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls-~Nr---l~~~~~s~~ 192 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKI----LPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLS-SNR---LSNFISSNT 192 (505)
T ss_pred hhhheeecCccccccchhhhhhh----CCcceeecchhhhHHhHHH-HHHHHHhcccchhcccc-ccc---ccCCccccc
Confidence 67777777777664442 4444 8899999999988776665 55556788899999988 554 2222111
Q ss_pred ccCcCCcceEecCCCCccc-ccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCcccccccc--ccccCcc
Q 011015 155 IEKLIHLKYLNLCGQTEIE-KLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLP--VGIGELI 231 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~--~~i~~l~ 231 (495)
-..+++|+.|.++.|++.. .+...+..+|+|+.|.|.+|..+..-......+..|+.|+|++|.+.. .+ ...+.++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccccccc
Confidence 2256888888888888432 233445578888888888885232222233456778888888885543 33 3467777
Q ss_pred cccccCeEEecCcc
Q 011015 232 SLREVTKFVVGGGY 245 (495)
Q Consensus 232 ~L~~L~l~~~~~~~ 245 (495)
.|+.|.+..+....
T Consensus 272 ~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 272 GLNQLNLSSTGIAS 285 (505)
T ss_pred chhhhhccccCcch
Confidence 88888777665543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=6.9e-11 Score=112.25 Aligned_cols=215 Identities=25% Similarity=0.288 Sum_probs=144.2
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCc
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHL 161 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L 161 (495)
++.+++.....+|....+ -.+..-...+++.|++ .. +|..+..+..|..+.+. .+. +..+|..++++..|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~--~~ltdt~~aDlsrNR~---~e-lp~~~~~f~~Le~liLy-~n~---~r~ip~~i~~L~~l 123 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAAS--YDLTDTVFADLSRNRF---SE-LPEEACAFVSLESLILY-HNC---IRTIPEAICNLEAL 123 (722)
T ss_pred ccccccchhhcCCCcccc--ccccchhhhhcccccc---cc-CchHHHHHHHHHHHHHH-hcc---ceecchhhhhhhHH
Confidence 445555555545433322 1266667778888874 22 66667777788888887 555 67778888888888
Q ss_pred ceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEe
Q 011015 162 KYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVV 241 (495)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~ 241 (495)
.+|+|+.|. +..+|..+..|+ |+.|-+++|+ +..+|..++.++.|..||.+.|. ...+|..++.+.+|+.|.+..|
T Consensus 124 t~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 124 TFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred HHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh
Confidence 888888888 788888777776 8888888887 78888888888888888888884 4567777888888888877666
Q ss_pred cCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCc
Q 011015 242 GGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNL 321 (495)
Q Consensus 242 ~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L 321 (495)
.... .+.++ . .=.|..|++++|++ ..++-.+..+..|
T Consensus 200 ~l~~----lp~El----------------------------~-~LpLi~lDfScNki----------s~iPv~fr~m~~L 236 (722)
T KOG0532|consen 200 HLED----LPEEL----------------------------C-SLPLIRLDFSCNKI----------SYLPVDFRKMRHL 236 (722)
T ss_pred hhhh----CCHHH----------------------------h-CCceeeeecccCce----------eecchhhhhhhhh
Confidence 5432 11111 1 11366777777774 3356666777888
Q ss_pred ceEEEeeecCcCCCCCCchhh---hccccceeeecCcc
Q 011015 322 KKLEIYDYRGRRNVVPINWIM---SLTNLRDLSLSKWR 356 (495)
Q Consensus 322 ~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 356 (495)
+.|.|.+|.... ||.-+. ...=-++|+..-|.
T Consensus 237 q~l~LenNPLqS---PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 237 QVLQLENNPLQS---PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeccCCCCC---ChHHHHhccceeeeeeecchhcc
Confidence 888888877765 233332 22223566666663
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.7e-10 Score=105.67 Aligned_cols=269 Identities=20% Similarity=0.102 Sum_probs=165.7
Q ss_pred CCcceEecCCCCcccccc--hhhhccccCcEeecCCCcCCcc--cchhhccCCcccEEecCCcccccccc-c-cccCccc
Q 011015 159 IHLKYLNLCGQTEIEKLP--ETLCELYNLECLNVSGCWNLRE--LPRGIGKLRKLMYLYNEGTSCLRYLP-V-GIGELIS 232 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~~~~-~-~i~~l~~ 232 (495)
..|+.|.++++.-.+.-+ .....++++++|.+.+|..+.+ +-..-..+++|++|++..|...+... . -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457788888876444322 3355778888888888764433 11122457778888877763322211 1 1234555
Q ss_pred ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHh
Q 011015 233 LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLL 312 (495)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 312 (495)
|++++++.+... ... ......+++..++.+...+|. +.....+.
T Consensus 218 L~~lNlSwc~qi---------------------------~~~--gv~~~~rG~~~l~~~~~kGC~-------e~~le~l~ 261 (483)
T KOG4341|consen 218 LKYLNLSWCPQI---------------------------SGN--GVQALQRGCKELEKLSLKGCL-------ELELEALL 261 (483)
T ss_pred HHHhhhccCchh---------------------------hcC--cchHHhccchhhhhhhhcccc-------cccHHHHH
Confidence 555555544322 210 011223344455555444443 11222333
Q ss_pred hcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC---CCCCCccceeeccccccceEeCcccc
Q 011015 313 EALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP---LGKLPSLEYLVIELMNSVKRVGNEFL 389 (495)
Q Consensus 313 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~ 389 (495)
..-..++.+.++++..|...++.-.-..-..+..|+.|+.++|...++.+. ..+.++|+.|.+++|..+++......
T Consensus 262 ~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh
Confidence 334556778888877775544211001112688999999999987665443 56789999999999998876655444
Q ss_pred CCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCC-----CcCCCCCCCccEEE
Q 011015 390 GVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKAL-----PDHLLQKTTLQKLW 464 (495)
Q Consensus 390 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l-----~~~~~~l~~L~~L~ 464 (495)
+. +++.|+.+++..|....+..+ -..-.+++.|++|.++.|..+++. ...-.....|..+.
T Consensus 342 ~r----------n~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 342 GR----------NCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred hc----------CChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 43 789999999999875544422 222347999999999999776653 33345678999999
Q ss_pred EeCCcchhHhhhc
Q 011015 465 IWGCPILEERCRK 477 (495)
Q Consensus 465 l~~~~~l~~~~~~ 477 (495)
+++||.+.+..-.
T Consensus 408 L~n~p~i~d~~Le 420 (483)
T KOG4341|consen 408 LDNCPLITDATLE 420 (483)
T ss_pred ecCCCCchHHHHH
Confidence 9999999887554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.8e-10 Score=102.80 Aligned_cols=179 Identities=18% Similarity=0.084 Sum_probs=125.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++.|+++.|-+..... +.....++|+|+.|+++.|.+....+..- -..+++|++|.++ .|.+. ..++-.....+
T Consensus 147 ~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--~~~l~~lK~L~l~-~CGls-~k~V~~~~~~f 221 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNT--TLLLSHLKQLVLN-SCGLS-WKDVQWILLTF 221 (505)
T ss_pred cceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccc--hhhhhhhheEEec-cCCCC-HHHHHHHHHhC
Confidence 89999999998876221 11122359999999999999654333221 2367889999999 77731 33344456678
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc--hhhccCCcccEEecCCccccc-ccccc-----ccCc
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSCLR-YLPVG-----IGEL 230 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~-~~~~~-----i~~l 230 (495)
|+|+.|.|.+|..+..-.....-+..|++|||++|. +.+.+ ...+.++.|..|+++.|.+.. ..|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 999999999995344433445567889999999998 55555 457899999999999996544 23333 3567
Q ss_pred ccccccCeEEecCccCCccCccchhcccccCCcee
Q 011015 231 ISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSI 265 (495)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~ 265 (495)
++|+.|.+..|.+.. ...+..+..+.+|+.+.+
T Consensus 301 ~kL~~L~i~~N~I~~--w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 301 PKLEYLNISENNIRD--WRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccceeeecccCcccc--ccccchhhccchhhhhhc
Confidence 889999999888765 555666666666666553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=3.9e-09 Score=92.73 Aligned_cols=129 Identities=21% Similarity=0.194 Sum_probs=81.0
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
...|..+++++|.+.. +.++..-.+.+|+|+++ ++. +..+- .+..+++|+.|||++|. +..+...-.++-
T Consensus 283 Wq~LtelDLS~N~I~~----iDESvKL~Pkir~L~lS-~N~---i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ----IDESVKLAPKLRRLILS-QNR---IRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchhh----hhhhhhhccceeEEecc-ccc---eeeeh-hhhhcccceEeecccch-hHhhhhhHhhhc
Confidence 4557777777776432 33345556777777777 555 43332 25667777777777776 555444444666
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccc-cccccccCcccccccCeEEecCc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLR-YLPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
+.++|.|++|. ++++ ++++++.+|..||+++|++.. .....|++++-|+++.+.+|+..
T Consensus 353 NIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77777777775 5555 367777777777777775432 22345777777777777766554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=3e-09 Score=93.46 Aligned_cols=130 Identities=25% Similarity=0.243 Sum_probs=105.6
Q ss_pred CCCceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccc
Q 011015 76 EQKKVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNI 155 (495)
Q Consensus 76 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~ 155 (495)
.|..+..+++++|.+..+.++..- .|+++.|+++.|.+..+.. ++.+++|..||++ ++. ...+-.+-
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL----~Pkir~L~lS~N~i~~v~n-----La~L~~L~~LDLS-~N~---Ls~~~Gwh 348 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKL----APKLRRLILSQNRIRTVQN-----LAELPQLQLLDLS-GNL---LAECVGWH 348 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhh----ccceeEEeccccceeeehh-----hhhcccceEeecc-cch---hHhhhhhH
Confidence 344788999999999877777665 9999999999999643333 8889999999999 665 65555555
Q ss_pred cCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc--hhhccCCcccEEecCCccccc
Q 011015 156 EKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSCLR 221 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~ 221 (495)
..+-+++.|.|++|. +..+. .++++-+|..||+++|+ +..+- ..++++|.|+++.|.+|.+..
T Consensus 349 ~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 678999999999998 77764 48899999999999998 65543 468999999999999996543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=2.5e-08 Score=97.79 Aligned_cols=198 Identities=32% Similarity=0.317 Sum_probs=128.9
Q ss_pred EEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcC-CcceEecCCCCcccccchhhhccccCcE
Q 011015 109 SLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLI-HLKYLNLCGQTEIEKLPETLCELYNLEC 187 (495)
Q Consensus 109 ~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 187 (495)
.+....+.+ .. -...+..++.++.|++. ++. +.+++.....+. +|+.|++++|. +..+|..+..+++|+.
T Consensus 97 ~l~~~~~~~---~~-~~~~~~~~~~l~~L~l~-~n~---i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRL---RS-NISELLELTNLTSLDLD-NNN---ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167 (394)
T ss_pred eeecccccc---cc-CchhhhcccceeEEecC-Ccc---cccCccccccchhhcccccccccc-hhhhhhhhhccccccc
Confidence 466666663 11 12224556788889988 666 777777777774 89999999998 8888777888999999
Q ss_pred eecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeec
Q 011015 188 LNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRG 267 (495)
Q Consensus 188 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~ 267 (495)
|++++|. +..+|...+.+++|+.|++++|. ...+|..+.....|+++.+..|.... .+..+..
T Consensus 168 L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~----------- 230 (394)
T COG4886 168 LDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIE----LLSSLSN----------- 230 (394)
T ss_pred cccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCccee----cchhhhh-----------
Confidence 9999998 88888777788899999999984 45667666666678888887764211 1111222
Q ss_pred cCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhcccc
Q 011015 268 LGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNL 347 (495)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 347 (495)
+.++..+.+..+.+ ...+..+..+++++.|++++|.... + +. +....++
T Consensus 231 -----------------~~~l~~l~l~~n~~----------~~~~~~~~~l~~l~~L~~s~n~i~~--i-~~-~~~~~~l 279 (394)
T COG4886 231 -----------------LKNLSGLELSNNKL----------EDLPESIGNLSNLETLDLSNNQISS--I-SS-LGSLTNL 279 (394)
T ss_pred -----------------cccccccccCCcee----------eeccchhccccccceeccccccccc--c-cc-ccccCcc
Confidence 22333333333321 0113344455567777777776666 4 22 6666777
Q ss_pred ceeeecCccCCCCCCC
Q 011015 348 RDLSLSKWRNCEHLPP 363 (495)
Q Consensus 348 ~~L~l~~~~~~~~~~~ 363 (495)
+.|+++++......+.
T Consensus 280 ~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 280 RELDLSGNSLSNALPL 295 (394)
T ss_pred CEEeccCccccccchh
Confidence 7777777766655544
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=3.2e-08 Score=96.95 Aligned_cols=192 Identities=24% Similarity=0.207 Sum_probs=140.5
Q ss_pred EEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc-cCcEeecCCCcCCcccchhhccCCcccEEec
Q 011015 136 ALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY-NLECLNVSGCWNLRELPRGIGKLRKLMYLYN 214 (495)
Q Consensus 136 ~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 214 (495)
.+.+. .+. +......+..+..++.|++.++. +..+|....... +|+.|++++|. +..+|..++.+++|+.|++
T Consensus 97 ~l~~~-~~~---~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLN-LNR---LRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeecc-ccc---cccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhcccccccccc
Confidence 46666 443 32333446667899999999999 888888777774 99999999998 8888888999999999999
Q ss_pred CCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEE
Q 011015 215 EGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLY 294 (495)
Q Consensus 215 ~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 294 (495)
++|.+ ..+|...+.++.|+.|++.++.+.. +... ......|+++.++
T Consensus 171 ~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~-----l~~~---------------------------~~~~~~L~~l~~~ 217 (394)
T COG4886 171 SFNDL-SDLPKLLSNLSNLNNLDLSGNKISD-----LPPE---------------------------IELLSALEELDLS 217 (394)
T ss_pred CCchh-hhhhhhhhhhhhhhheeccCCcccc-----Cchh---------------------------hhhhhhhhhhhhc
Confidence 99954 5566656688899999988876653 0000 0122346677777
Q ss_pred EecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceee
Q 011015 295 FDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLV 374 (495)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 374 (495)
.|.. ...+..+..+.++..+.+.++.... + +..+..+++++.|++++|.+....+ ++.+.+|+.|+
T Consensus 218 ~N~~----------~~~~~~~~~~~~l~~l~l~~n~~~~--~-~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~ 283 (394)
T COG4886 218 NNSI----------IELLSSLSNLKNLSGLELSNNKLED--L-PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELD 283 (394)
T ss_pred CCcc----------eecchhhhhcccccccccCCceeee--c-cchhccccccceecccccccccccc-ccccCccCEEe
Confidence 6631 2234455566777777777776655 4 6778888999999999997766444 88899999999
Q ss_pred cccccc
Q 011015 375 IELMNS 380 (495)
Q Consensus 375 l~~~~~ 380 (495)
+++...
T Consensus 284 ~s~n~~ 289 (394)
T COG4886 284 LSGNSL 289 (394)
T ss_pred ccCccc
Confidence 986653
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=2e-09 Score=102.56 Aligned_cols=171 Identities=24% Similarity=0.286 Sum_probs=121.4
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcC
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLI 159 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~ 159 (495)
+..+.++.|.+..+|..+.+ +..|.+|+++.|.++ .+|.-+..+ -|++|-++ |+. +..+|..++.+.
T Consensus 100 Le~liLy~n~~r~ip~~i~~----L~~lt~l~ls~NqlS----~lp~~lC~l-pLkvli~s-NNk---l~~lp~~ig~~~ 166 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICN----LEALTFLDLSSNQLS----HLPDGLCDL-PLKVLIVS-NNK---LTSLPEEIGLLP 166 (722)
T ss_pred HHHHHHHhccceecchhhhh----hhHHHHhhhccchhh----cCChhhhcC-cceeEEEe-cCc---cccCCcccccch
Confidence 34455555666556666666 777888888887742 244434333 47888888 777 778888888888
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
.|..|+.+.|. +..+|..++.+.+|+.|.++.|. +..+|..+..| .|..||++.| ....+|..|.+|..|+.|-+.
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhheeeeec
Confidence 88888998888 88888888888889999888887 78888888854 4888999888 456788889999999999888
Q ss_pred EecCccCCccCccchhcccccCCceeecc
Q 011015 240 VVGGGYDRACSLGSLKKLNLLRKCSIRGL 268 (495)
Q Consensus 240 ~~~~~~~~~~~~~~l~~l~~L~~l~~~~~ 268 (495)
+|.... .+..+....+..-++.|....+
T Consensus 243 nNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 243 NNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 887754 1122222333444444444443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=1.2e-07 Score=97.45 Aligned_cols=107 Identities=25% Similarity=0.333 Sum_probs=89.2
Q ss_pred eeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEE
Q 011015 133 CLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYL 212 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 212 (495)
.++.|+|+ ++.. ...+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++.+++|+.|
T Consensus 419 ~v~~L~L~-~n~L--~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLD-NQGL--RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECC-CCCc--cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 47889999 6652 55678889999999999999999777999999999999999999998667899999999999999
Q ss_pred ecCCccccccccccccCc-ccccccCeEEec
Q 011015 213 YNEGTSCLRYLPVGIGEL-ISLREVTKFVVG 242 (495)
Q Consensus 213 ~L~~~~~~~~~~~~i~~l-~~L~~L~l~~~~ 242 (495)
+|++|.+.+.+|..++.. .++..+++..|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999998888899877653 345556655554
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=9e-08 Score=98.41 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=79.3
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999788999999999999999999998667899999999999999999999988999999999999999999
Q ss_pred EecCcc
Q 011015 240 VVGGGY 245 (495)
Q Consensus 240 ~~~~~~ 245 (495)
.|.+..
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 988764
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2e-09 Score=94.52 Aligned_cols=115 Identities=23% Similarity=0.173 Sum_probs=62.3
Q ss_pred hcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcC-CCCCCcceEEEeeecCcC
Q 011015 255 KKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL-GPPPNLKKLEIYDYRGRR 333 (495)
Q Consensus 255 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 333 (495)
.+++.|..|.+.+|......-......+ -++|+.|+++++. ......-...+ ..||+|..|+++++....
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~r-------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYR-------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhH-------hhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 3444444444544444333322222222 2466677776654 11111122222 457788888888776654
Q ss_pred CCCCCchhhhccccceeeecCccCCC--CCCCCCCCCccceeeccccc
Q 011015 334 NVVPINWIMSLTNLRDLSLSKWRNCE--HLPPLGKLPSLEYLVIELMN 379 (495)
Q Consensus 334 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 379 (495)
... ...+..++.|++|.++.|.... .+-.+...|.|.+|++.+|-
T Consensus 328 ~~~-~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 NDC-FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chH-HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 212 2334477788888888775442 11126778888888888775
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.9e-09 Score=93.44 Aligned_cols=182 Identities=16% Similarity=0.090 Sum_probs=120.7
Q ss_pred CcccEEecCCcccccccc-ccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccc
Q 011015 207 RKLMYLYNEGTSCLRYLP-VGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQ 285 (495)
Q Consensus 207 ~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (495)
++|++|||++..+...-- .-+..|++|+.|.+.++... +.....+.+-.+|+.+++..+++.+..+ ....+..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~--~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTENA--LQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccchhH--HHHHHHhh
Confidence 357777777664433222 22456677777777666554 3334445666677777777777665432 23557789
Q ss_pred cccceEEEEEecCCCCCCccchhHHHhhcCCC-CCCcceEEEeeecCcCCCCCCch----hhhccccceeeecCccCCCC
Q 011015 286 KYLVELGLYFDQAGRRENEEDEDERLLEALGP-PPNLKKLEIYDYRGRRNVVPINW----IMSLTNLRDLSLSKWRNCEH 360 (495)
Q Consensus 286 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 360 (495)
+.|..|++++|.+.. +.....+.. -++|+.|+++|+.-.- . .+. ...+++|..|||++|.....
T Consensus 260 s~L~~LNlsWc~l~~--------~~Vtv~V~hise~l~~LNlsG~rrnl--~-~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFT--------EKVTVAVAHISETLTQLNLSGYRRNL--Q-KSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hhHhhcCchHhhccc--------hhhhHHHhhhchhhhhhhhhhhHhhh--h-hhHHHHHHHhCCceeeeccccccccCc
Confidence 999999999997432 222222222 3689999999975432 1 222 33889999999999976654
Q ss_pred CC--CCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccc
Q 011015 361 LP--PLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMK 415 (495)
Q Consensus 361 ~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 415 (495)
-- .+.+++.|++|.++.|..+. ++.+... ...|+|.+|++.+|-
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l---------~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDII--PETLLEL---------NSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCC--hHHeeee---------ccCcceEEEEecccc
Confidence 22 27789999999999998663 4444332 268999999999984
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=9.3e-07 Score=60.73 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=25.9
Q ss_pred eeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCc
Q 011015 133 CLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCW 194 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 194 (495)
+|++|+++ ++. +..+| ..|.++++|++|++++|. +..++ ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~-~n~---l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-NNK---LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-SST---ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-CCC---CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444 333 33443 234445555555555554 33333 234455555555555543
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=1e-06 Score=60.54 Aligned_cols=58 Identities=28% Similarity=0.474 Sum_probs=47.5
Q ss_pred CCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCcc
Q 011015 159 IHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTS 218 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~ 218 (495)
++|++|++++|. +..+| ..+..+++|++|++++|. +..+++ .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 578899999998 77777 467789999999999888 566554 57899999999999884
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=5.1e-07 Score=79.66 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=45.1
Q ss_pred ccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-
Q 011015 285 QKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP- 363 (495)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 363 (495)
++++..+.+..+.+.. ...-+....+|.+.-|+++.+.+..-.. .+.+..++.|+.|.+.++.+.+.+..
T Consensus 198 Fpnv~sv~v~e~PlK~--------~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKT--------ESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred cccchheeeecCcccc--------hhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCC
Confidence 3555555565554321 1222233345555566666554432000 12345777888888888777664432
Q ss_pred ------CCCCCccceeecc
Q 011015 364 ------LGKLPSLEYLVIE 376 (495)
Q Consensus 364 ------~~~l~~L~~L~l~ 376 (495)
++.+++++.|+=+
T Consensus 269 err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cceEEEEeeccceEEecCc
Confidence 5677888877654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=6.1e-07 Score=78.15 Aligned_cols=154 Identities=16% Similarity=-0.012 Sum_probs=84.6
Q ss_pred cccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCC---chhhhccccceeeecCccCCCC
Q 011015 284 KQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPI---NWIMSLTNLRDLSLSKWRNCEH 360 (495)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 360 (495)
.-+.|+++....|++-+ .....+-..+.....|+.+.+..|.+....+.. ..+..+.+|+.|++++|.++..
T Consensus 155 ~kp~Le~vicgrNRlen-----gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 155 DKPKLEVVICGRNRLEN-----GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred cCCCceEEEeccchhcc-----CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 34677777777776532 122223334445568899999888754311100 1233778999999999977643
Q ss_pred CCC-----CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccccccccccc-ccccCc
Q 011015 361 LPP-----LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKG-EIIIMP 434 (495)
Q Consensus 361 ~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~-~~~~~~ 434 (495)
... +..++.|+.|.+.+|-.-..-...+.... .-..+|+|..|...++..=........+|. .-..+|
T Consensus 230 gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p 303 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF------NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVP 303 (388)
T ss_pred hHHHHHHHhcccchhhhccccchhhccccHHHHHHHh------hhhcCCCccccccchhhhcCceeeeechhhhhhcccH
Confidence 222 55677899999988852211111111000 011467888887665542111111111111 123688
Q ss_pred ccceeeecCCcCcc
Q 011015 435 RLSSLSIDGCPKLK 448 (495)
Q Consensus 435 ~L~~L~l~~c~~~~ 448 (495)
-|..|.+.||.+..
T Consensus 304 ~L~~le~ngNr~~E 317 (388)
T COG5238 304 LLVDLERNGNRIKE 317 (388)
T ss_pred HHHHHHHccCcchh
Confidence 88888888876543
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=3.8e-07 Score=89.65 Aligned_cols=129 Identities=27% Similarity=0.277 Sum_probs=82.4
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+..++.+.+..|.+.. .-+.+..++.|..|++. .+. +..+...+..+++|++|++++|. ++.+.. +..++
T Consensus 71 l~~l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~-~n~---i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK----ILNHLSKLKSLEALDLY-DNK---IEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLT 140 (414)
T ss_pred hHhHHhhccchhhhhh----hhcccccccceeeeecc-ccc---hhhcccchhhhhcchheeccccc-cccccc-hhhcc
Confidence 5566666666666322 11225667777888887 555 55554446677888888888887 555533 56677
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCcccccccc-ccccCcccccccCeEEecCcc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLP-VGIGELISLREVTKFVVGGGY 245 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~ 245 (495)
.|+.|++.+|. +..+. ++..+++|+.+++++|.+...-+ . ...+.+++.+.+..+....
T Consensus 141 ~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 141 LLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred chhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 78888888876 55543 45557778888888875543332 1 4666777777777665543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=2.4e-06 Score=74.56 Aligned_cols=242 Identities=17% Similarity=0.055 Sum_probs=127.9
Q ss_pred CCCccEEEEcCCccCcc-cccchHHhhcCCeeeEEEccCccCcccccccc-------ccccCcCCcceEecCCCCccccc
Q 011015 104 MRRLRSLLVEGGDYSWS-SKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-------KNIEKLIHLKYLNLCGQTEIEKL 175 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-------~~~~~l~~L~~L~l~~~~~~~~l 175 (495)
+..+..+++++|.+..- ...+...+..-++|++.++++-......+.++ ..+..|++|+..+||.|.+-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 77788888888875321 13355556677788888877322111112222 33456778888888887733344
Q ss_pred chh----hhccccCcEeecCCCcCCcccchh-h-------------ccCCcccEEecCCcccccccc-----ccccCccc
Q 011015 176 PET----LCELYNLECLNVSGCWNLRELPRG-I-------------GKLRKLMYLYNEGTSCLRYLP-----VGIGELIS 232 (495)
Q Consensus 176 p~~----~~~l~~L~~L~L~~~~~~~~lp~~-l-------------~~l~~L~~L~L~~~~~~~~~~-----~~i~~l~~ 232 (495)
|+. ++.-..|.+|.+++|. ++.+..+ + ..-|.|+......|++- ..| ..+....+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 433 4556677888887776 4433211 1 23456677666666431 111 12333345
Q ss_pred ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHh
Q 011015 233 LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLL 312 (495)
Q Consensus 233 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 312 (495)
|+++.+..|.+.. ..+ .......+..+.+|+.|++..|.++. ..+..+-
T Consensus 187 lk~vki~qNgIrp---egv-----------------------~~L~~~gl~y~~~LevLDlqDNtft~-----~gS~~La 235 (388)
T COG5238 187 LKEVKIQQNGIRP---EGV-----------------------TMLAFLGLFYSHSLEVLDLQDNTFTL-----EGSRYLA 235 (388)
T ss_pred ceeEEeeecCcCc---chh-----------------------HHHHHHHHHHhCcceeeeccccchhh-----hhHHHHH
Confidence 6666665555442 111 11112223445667777776666442 2223344
Q ss_pred hcCCCCCCcceEEEeeecCcCCCCCCchhh-----hccccceeeecCccCCCC------CCC--CCCCCccceeeccccc
Q 011015 313 EALGPPPNLKKLEIYDYRGRRNVVPINWIM-----SLTNLRDLSLSKWRNCEH------LPP--LGKLPSLEYLVIELMN 379 (495)
Q Consensus 313 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~------~~~--~~~l~~L~~L~l~~~~ 379 (495)
..++.++.|+.|.+.+|-...... .+.+. ..++|..|...+|..... ++. -..+|-|..|.+.+++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~-~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGV-KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHhcccchhhhccccchhhccccH-HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 455556667777776665443111 12221 346666666666654331 222 3467777777776544
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=7.5e-06 Score=84.24 Aligned_cols=148 Identities=22% Similarity=0.248 Sum_probs=98.4
Q ss_pred ceEEEEEEeccCCC--cchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccccc
Q 011015 79 KVLHLMLTVDVGTS--VPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~ 156 (495)
++++|++.+...-. -+..+.. .+|.|++|.+.+-.+.. +.+......+++|+.||+| ++. +..+ ..++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~---~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS-~Tn---I~nl-~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGT---MLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDIS-GTN---ISNL-SGIS 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhh---hCcccceEEecCceecc--hhHHHHhhccCccceeecC-CCC---ccCc-HHHh
Confidence 67888887754431 1222332 38999999998866422 2255557789999999999 666 6666 5688
Q ss_pred CcCCcceEecCCCCcccccc--hhhhccccCcEeecCCCcCCccc--chh----hccCCcccEEecCCcccccccccc-c
Q 011015 157 KLIHLKYLNLCGQTEIEKLP--ETLCELYNLECLNVSGCWNLREL--PRG----IGKLRKLMYLYNEGTSCLRYLPVG-I 227 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~l--p~~----l~~l~~L~~L~L~~~~~~~~~~~~-i 227 (495)
.+++|+.|.+.+-. ...-. ..+..|++|+.||++........ ... -..||+|+.||.|++.+...+.+. +
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 99999999988876 33222 35778999999999987633221 111 135899999999988765544433 2
Q ss_pred cCcccccccC
Q 011015 228 GELISLREVT 237 (495)
Q Consensus 228 ~~l~~L~~L~ 237 (495)
...++|+.+.
T Consensus 272 ~sH~~L~~i~ 281 (699)
T KOG3665|consen 272 NSHPNLQQIA 281 (699)
T ss_pred HhCccHhhhh
Confidence 3445555444
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.5e-06 Score=85.38 Aligned_cols=108 Identities=30% Similarity=0.309 Sum_probs=76.2
Q ss_pred hcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCc
Q 011015 129 DKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRK 208 (495)
Q Consensus 129 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~ 208 (495)
..+..++.+.+. .+. +......+..+.+|+.|++..|. +..+...+..+++|++|++++|. +..+. .+..++.
T Consensus 69 ~~l~~l~~l~l~-~n~---i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~ 141 (414)
T KOG0531|consen 69 ESLTSLKELNLR-QNL---IAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTL 141 (414)
T ss_pred HHhHhHHhhccc-hhh---hhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccc
Confidence 345556666666 444 55544457788899999999998 66665547788899999999987 66664 5677778
Q ss_pred ccEEecCCccccccccccccCcccccccCeEEecCcc
Q 011015 209 LMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGY 245 (495)
Q Consensus 209 L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 245 (495)
|+.|++++|.+.. ..++..+.+|+.+++.++.+..
T Consensus 142 L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 142 LKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhheeccCcchh--ccCCccchhhhcccCCcchhhh
Confidence 9999999885432 2345557778888777776553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.3e-05 Score=50.34 Aligned_cols=34 Identities=41% Similarity=0.517 Sum_probs=15.1
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCc
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCW 194 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 194 (495)
+|++|++++|. +..+|..++++++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 34444444444 44444444444444444444444
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=9.6e-07 Score=87.10 Aligned_cols=108 Identities=24% Similarity=0.182 Sum_probs=58.4
Q ss_pred HhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhcc
Q 011015 127 LFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGK 205 (495)
Q Consensus 127 ~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~ 205 (495)
+++-++.|+.|+|+ +|. ..+.. .+..|++|++|||++|. +..+|.. ...+. |+.|.+++|. +.++- ++.+
T Consensus 182 SLqll~ale~LnLs-hNk---~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~ 252 (1096)
T KOG1859|consen 182 SLQLLPALESLNLS-HNK---FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNA-LTTLR-GIEN 252 (1096)
T ss_pred HHHHHHHhhhhccc-hhh---hhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccH-HHhhh-hHHh
Confidence 34455566666666 555 33332 45566666666666666 5555532 22333 6666666665 44442 5566
Q ss_pred CCcccEEecCCcccccccc-ccccCcccccccCeEEecC
Q 011015 206 LRKLMYLYNEGTSCLRYLP-VGIGELISLREVTKFVVGG 243 (495)
Q Consensus 206 l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~ 243 (495)
+.+|+.||++.|-+...-- .-++.+.+|+.|.+.+|+.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6677777776663322110 1134555666666665544
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=4.2e-06 Score=74.03 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=63.0
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccc-cCcCCcceEecCCCCccc-ccchhhh
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNI-EKLIHLKYLNLCGQTEIE-KLPETLC 180 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~-~lp~~~~ 180 (495)
.++.++.+++.+|.++.+.+ +-.++..+++|++|+++ ++. .....+.. ..+.+|+.|-|.++.+.- .....+.
T Consensus 69 ~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls-~N~---L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLS-CNS---LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHH-HHHHHhcCccceEeecc-CCc---CCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 48899999999999887777 55567899999999998 766 32222222 356789999998887322 2334466
Q ss_pred ccccCcEeecCCCc
Q 011015 181 ELYNLECLNVSGCW 194 (495)
Q Consensus 181 ~l~~L~~L~L~~~~ 194 (495)
.+|.++.|.++.|.
T Consensus 144 ~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS 157 (418)
T ss_pred cchhhhhhhhccch
Confidence 78888888888774
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=1.3e-05 Score=82.47 Aligned_cols=135 Identities=20% Similarity=0.066 Sum_probs=81.3
Q ss_pred CCcceEecCCCCccccc-chhhh-ccccCcEeecCCCcCC-cccchhhccCCcccEEecCCccccccccccccCcccccc
Q 011015 159 IHLKYLNLCGQTEIEKL-PETLC-ELYNLECLNVSGCWNL-RELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLRE 235 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~l-p~~~~-~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~ 235 (495)
.+|++|++++......- |..++ .+|+|+.|.+++-... .++-....++|+|..||+|++.+.. + .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 67888888776533322 22233 5788888888875422 2223334577888888888885432 2 56788888888
Q ss_pred cCeEEecCccCCccCccchhcccccCCceeeccCCCCChhh--hHhhccccccccceEEEEEec
Q 011015 236 VTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGE--VRRAELEKQKYLVELGLYFDQ 297 (495)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 297 (495)
|.+.+-.+.. ...+..+-.|++|++|+++.-........ .....-..+|+|+.|+.+++.
T Consensus 200 L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 8777665554 44555666677777777776544433311 112222346677777777654
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=2.3e-06 Score=66.72 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
-..|...++++|.+ ..+.+..-..++.+++|+++ ++. +.++|..+..++.|+.|+++.|. +...|..+..+.
T Consensus 52 ~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~-~ne---isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 52 GYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLA-NNE---ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLI 123 (177)
T ss_pred CceEEEEecccchh---hhCCHHHhhccchhhhhhcc-hhh---hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHH
Confidence 44555566666653 22222222344555666666 555 55666556666666666666666 555555555566
Q ss_pred cCcEeecCCCcCCcccch
Q 011015 184 NLECLNVSGCWNLRELPR 201 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~ 201 (495)
+|..|+..++. ...+|.
T Consensus 124 ~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDV 140 (177)
T ss_pred hHHHhcCCCCc-cccCcH
Confidence 66666655554 444443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.2e-05 Score=47.62 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=24.1
Q ss_pred eeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccc
Q 011015 133 CLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLP 176 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp 176 (495)
+|++|+++ ++. +..+|..++++++|++|++++|. +..++
T Consensus 2 ~L~~L~l~-~N~---i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLS-NNQ---ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEET-SSS----SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEcc-CCC---CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 56667776 555 66666556777777777777776 44443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=1e-05 Score=63.19 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=75.6
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.+..+++++|.+..+|..+.. .++.+.+|++.+|.+ .+ +|.-+..++.||.|+++ .+. +...|..+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~---kf~t~t~lNl~~nei---sd-vPeE~Aam~aLr~lNl~-~N~---l~~~p~vi~~L 122 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTI---KFPTATTLNLANNEI---SD-VPEELAAMPALRSLNLR-FNP---LNAEPRVIAPL 122 (177)
T ss_pred eEEEEecccchhhhCCHHHhh---ccchhhhhhcchhhh---hh-chHHHhhhHHhhhcccc-cCc---cccchHHHHHH
Confidence 788899999999999988876 477999999999984 44 67779999999999999 777 77778888889
Q ss_pred CCcceEecCCCCcccccchhh
Q 011015 159 IHLKYLNLCGQTEIEKLPETL 179 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~ 179 (495)
.+|-+|+..+|. ...+|..+
T Consensus 123 ~~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 123 IKLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred HhHHHhcCCCCc-cccCcHHH
Confidence 999999999998 77777553
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=1.4e-05 Score=80.82 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=22.8
Q ss_pred cceeeecCCcCccCCC-cCCCC-CCCccEEEEeCCcchhHhhh
Q 011015 436 LSSLSIDGCPKLKALP-DHLLQ-KTTLQKLWIWGCPILEERCR 476 (495)
Q Consensus 436 L~~L~l~~c~~~~~l~-~~~~~-l~~L~~L~l~~~~~l~~~~~ 476 (495)
++.|+++.|.....-- ..... +.++..+++.+|+.+.....
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 6777777765443211 11111 56677777777776665544
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=3.1e-06 Score=83.64 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=98.0
Q ss_pred CCCCCCCCceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc
Q 011015 71 GMSSFEQKKVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK 150 (495)
Q Consensus 71 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 150 (495)
....+.+..+...+.++|.+..+..++.- ++.+++|+|++|.+..+. .+..+++|+.||+++| . +..
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L~~mD~SLql----l~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN-~---L~~ 223 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRLVLMDESLQL----LPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYN-C---LRH 223 (1096)
T ss_pred cccchhhhhHhhhhcchhhHHhHHHHHHH----HHHhhhhccchhhhhhhH-----HHHhcccccccccccc-h---hcc
Confidence 33444555788889999998877777776 999999999999964433 3788999999999954 4 555
Q ss_pred cccc-ccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc--hhhccCCcccEEecCCccc
Q 011015 151 IPKN-IEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 151 l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~ 219 (495)
+|.. ...+. |..|.+++|. ++.+- .+.+|++|+.||+++|- +...- .-++.+..|+.|+|.+|.+
T Consensus 224 vp~l~~~gc~-L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 224 VPQLSMVGCK-LQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccccchhhhh-heeeeecccH-HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5532 22334 9999999998 66663 47899999999999986 33221 2356788899999999854
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00022 Score=67.83 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=48.7
Q ss_pred HhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceE
Q 011015 311 LLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKR 383 (495)
Q Consensus 311 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 383 (495)
....+..+.+++.|++++|.... + |. -..+|+.|.+++|.....+|..- .++|++|.+++|..++.
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~s--L-P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIES--L-PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISG 109 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcc--c-CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccc
Confidence 33445557899999999997776 6 42 34579999999988777777511 36899999999876543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00036 Score=66.42 Aligned_cols=62 Identities=31% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccch
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPE 177 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (495)
|++++.|++++|.+.. +|. + -.+|++|.++ +|.. +..+|..+. .+|++|.+++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c~L~s----LP~-L--P~sLtsL~Ls-nc~n--LtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIES----LPV-L--PNELTEITIE-NCNN--LTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCCCCcc----cCC-C--CCCCcEEEcc-CCCC--cccCCchhh--hhhhheEccCccccccccc
Confidence 5556666666554321 221 1 1235556665 3321 334443331 4556666665532444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.31 E-value=2.1e-05 Score=79.45 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=22.7
Q ss_pred eeeecCCcCc-cCCCcCCCCCCCccEEEEeCCcchhHhhhc
Q 011015 438 SLSIDGCPKL-KALPDHLLQKTTLQKLWIWGCPILEERCRK 477 (495)
Q Consensus 438 ~L~l~~c~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~ 477 (495)
.+.+.+|+.+ ..+.........++.|+++.|..+......
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchH
Confidence 4555566555 222222233334899999999876555444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00038 Score=58.48 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=45.3
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccccc-CcCCcceEecCCCCcccccc--hhhhcc
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIE-KLIHLKYLNLCGQTEIEKLP--ETLCEL 182 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~lp--~~~~~l 182 (495)
....+++.+|++... +. |..++.|.+|.+. ++. +..+...+. .+++|..|.+.+|. +..+. ..+..|
T Consensus 43 ~~d~iDLtdNdl~~l----~~-lp~l~rL~tLll~-nNr---It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL----DN-LPHLPRLHTLLLN-NNR---ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC 112 (233)
T ss_pred ccceecccccchhhc----cc-CCCccccceEEec-CCc---ceeeccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence 444555555553211 11 4455555555555 444 444322222 23455555555555 33222 124445
Q ss_pred ccCcEeecCCCcCCcccc----hhhccCCcccEEecCC
Q 011015 183 YNLECLNVSGCWNLRELP----RGIGKLRKLMYLYNEG 216 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp----~~l~~l~~L~~L~L~~ 216 (495)
+.|++|.+-+|. ....+ -.+..+|+|+.||..+
T Consensus 113 p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 555555555554 22211 1234555555555543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00034 Score=58.76 Aligned_cols=61 Identities=28% Similarity=0.299 Sum_probs=25.6
Q ss_pred ccCcCCcceEecCCCCcccccchhh-hccccCcEeecCCCcCCcccch--hhccCCcccEEecCCc
Q 011015 155 IEKLIHLKYLNLCGQTEIEKLPETL-CELYNLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGT 217 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~ 217 (495)
+..++.|.+|.+.+|+ +..+.+.+ ..+++|..|.|.+|. +..+.+ .+..+|+|++|.+-+|
T Consensus 60 lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 3444555555555555 22222222 234445555555544 322211 1334444444444444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00046 Score=60.53 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred ccCcCCcceEecCCCCcccccchhhhccccCcEeecCCC--cCCcccchhhccCCcccEEecCCccccc-cccccccCcc
Q 011015 155 IEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGC--WNLRELPRGIGKLRKLMYLYNEGTSCLR-YLPVGIGELI 231 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~i~~l~ 231 (495)
.-.+..|+.|++.+.. +..+- .+-.+++|+.|.++.| +....++.-..++|+|++|++++|++.. .--..+..+.
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 4455667777777766 33332 2445778888888877 4334455445566888888888875321 0001133444
Q ss_pred cccccCeEEec
Q 011015 232 SLREVTKFVVG 242 (495)
Q Consensus 232 ~L~~L~l~~~~ 242 (495)
+|..|++..|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 44555554443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00016 Score=63.72 Aligned_cols=99 Identities=24% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccch--hhhc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPE--TLCE 181 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~ 181 (495)
+.+.+-|+.+||.+..+. +..+|+.|++|.|+ -+. +..+ +.+..|++|+.|.|+.|. +..+.+ -+.+
T Consensus 18 l~~vkKLNcwg~~L~DIs-----ic~kMp~lEVLsLS-vNk---IssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-----ICEKMPLLEVLSLS-VNK---ISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHHH-----HHHhcccceeEEee-ccc---cccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhc
Confidence 456677788887743222 25678888888888 666 5555 246778888888888887 555543 2557
Q ss_pred cccCcEeecCCCcCCcccch-----hhccCCcccEEe
Q 011015 182 LYNLECLNVSGCWNLRELPR-----GIGKLRKLMYLY 213 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~-----~l~~l~~L~~L~ 213 (495)
+++|+.|.|..|...+.-+. .+..||+|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888888877764443332 245677787775
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0009 Score=58.73 Aligned_cols=90 Identities=28% Similarity=0.281 Sum_probs=60.5
Q ss_pred chHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCC--CcccccchhhhccccCcEeecCCCcCCcccc-
Q 011015 124 LPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQ--TEIEKLPETLCELYNLECLNVSGCWNLRELP- 200 (495)
Q Consensus 124 l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp- 200 (495)
+......+..|+.|.+. +.. ...+ ..+..+++|+.|.++.| +....++..+-.+++|++|++++|+ +..+-
T Consensus 35 ~~gl~d~~~~le~ls~~-n~g---ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVI-NVG---LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLST 108 (260)
T ss_pred cccccccccchhhhhhh-ccc---eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccc
Confidence 44445556667777776 655 3222 23556789999999998 6555666656677999999999987 44321
Q ss_pred -hhhccCCcccEEecCCccc
Q 011015 201 -RGIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 201 -~~l~~l~~L~~L~L~~~~~ 219 (495)
..+..+.+|..|++.+|..
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcchhhhhcccCCc
Confidence 1356777888888888843
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00024 Score=62.56 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch--hhccCCc
Q 011015 131 LTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR--GIGKLRK 208 (495)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~ 208 (495)
+.+.+.|++. +|+ +.++ +....++.|+.|.|+-|. +..+.. +..|++|++|.|+.|. +.++-. -+.++|+
T Consensus 18 l~~vkKLNcw-g~~---L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCW-GCG---LDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhccc-CCC---ccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 4556778888 777 5554 235678999999999998 776643 7899999999999987 665543 2678999
Q ss_pred ccEEecCCcccccccccc-----ccCcccccccC
Q 011015 209 LMYLYNEGTSCLRYLPVG-----IGELISLREVT 237 (495)
Q Consensus 209 L~~L~L~~~~~~~~~~~~-----i~~l~~L~~L~ 237 (495)
|+.|.|..|...+..+.. +.-+++|+.|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999888665544432 34455555553
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.28 E-value=0.056 Score=43.28 Aligned_cols=100 Identities=12% Similarity=0.227 Sum_probs=42.4
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccch-hhh
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPE-TLC 180 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~ 180 (495)
+|++|+.+.+... +...-..+|..++.|+.+.+. +. +..++ ..+.++..|+.+.+.. . ...++. .+.
T Consensus 10 ~~~~l~~i~~~~~----~~~I~~~~F~~~~~l~~i~~~-~~----~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~ 78 (129)
T PF13306_consen 10 NCSNLESITFPNT----IKKIGENAFSNCTSLKSINFP-NN----LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFS 78 (129)
T ss_dssp T-TT--EEEETST------EE-TTTTTT-TT-SEEEES-ST----TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTT
T ss_pred CCCCCCEEEECCC----eeEeChhhccccccccccccc-cc----ccccceeeeecccccccccccc-c-cccccccccc
Confidence 3667777776532 222233446666667777766 32 33332 3356666677777754 2 333332 344
Q ss_pred ccccCcEeecCCCcCCcccch-hhccCCcccEEecCC
Q 011015 181 ELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEG 216 (495)
Q Consensus 181 ~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~ 216 (495)
.+++|+.+++..+ +..++. .+.++ +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 5667777776543 233332 34444 666666554
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0014 Score=55.20 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=6.5
Q ss_pred Cccceeeecccccccc
Q 011015 404 PKLKLLDFYIMKELEE 419 (495)
Q Consensus 404 ~~L~~L~l~~~~~l~~ 419 (495)
|+|+.|+|+.|+.+++
T Consensus 151 ~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITD 166 (221)
T ss_pred cchheeeccCCCeech
Confidence 3444444444443333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.94 E-value=0.012 Score=30.46 Aligned_cols=17 Identities=35% Similarity=0.901 Sum_probs=7.5
Q ss_pred cceEecCCCCcccccchh
Q 011015 161 LKYLNLCGQTEIEKLPET 178 (495)
Q Consensus 161 L~~L~l~~~~~~~~lp~~ 178 (495)
|++|++++|. +..+|..
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4444444444 3344443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.61 E-value=0.016 Score=30.06 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=8.9
Q ss_pred CcEeecCCCcCCcccchhh
Q 011015 185 LECLNVSGCWNLRELPRGI 203 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~~l 203 (495)
|++|++++|. +..+|+.+
T Consensus 2 L~~Ldls~n~-l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSF 19 (22)
T ss_dssp ESEEEETSSE-ESEEGTTT
T ss_pred ccEEECCCCc-CEeCChhh
Confidence 4555555554 33455443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0034 Score=52.95 Aligned_cols=68 Identities=22% Similarity=0.447 Sum_probs=53.3
Q ss_pred ccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccC-CCcCCCCCCCccEEEEeCCcchh
Q 011015 401 IAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKA-LPDHLLQKTTLQKLWIWGCPILE 472 (495)
Q Consensus 401 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~-l~~~~~~l~~L~~L~l~~~~~l~ 472 (495)
..++.++.|.+.+|..+.++++... -+..++|++|+|++|+.+++ -...+..+++|+.|.+.+-|-+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l----~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERL----GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHh----cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 3678888899999998988887433 11578999999999988875 33567788999999999877653
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.50 E-value=0.0063 Score=52.50 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=36.0
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+...+.||++.|..-+. -.-|+.++.|..|+++ .+. +..+|..++....++.+++..|. ....|.+++..+
T Consensus 41 ~kr~tvld~~s~r~vn~----~~n~s~~t~~~rl~~s-knq---~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL----GKNFSILTRLVRLDLS-KNQ---IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEP 111 (326)
T ss_pred cceeeeehhhhhHHHhh----ccchHHHHHHHHHhcc-Hhh---HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccC
Confidence 44455555555442111 1113334444444444 333 44444444444444444444444 444444444444
Q ss_pred cCcEeecCCCc
Q 011015 184 NLECLNVSGCW 194 (495)
Q Consensus 184 ~L~~L~L~~~~ 194 (495)
.++++++.++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 44444444443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.83 E-value=0.12 Score=24.79 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=3.4
Q ss_pred cceEecCCCC
Q 011015 161 LKYLNLCGQT 170 (495)
Q Consensus 161 L~~L~l~~~~ 170 (495)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444444
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.38 E-value=0.52 Score=37.55 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=54.7
Q ss_pred HHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccch-h
Q 011015 126 QLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPR-G 202 (495)
Q Consensus 126 ~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~ 202 (495)
.+|..+.+|+.+.+. . . +..+ ...|.++.+|+.+.+..+ +..++ ..+..++.|+.+.+.++ ...++. .
T Consensus 6 ~~F~~~~~l~~i~~~-~-~---~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~ 76 (129)
T PF13306_consen 6 NAFYNCSNLESITFP-N-T---IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNA 76 (129)
T ss_dssp TTTTT-TT--EEEET-S-T-----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTT
T ss_pred HHHhCCCCCCEEEEC-C-C---eeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--cccccccc
Confidence 347788889998887 3 2 4445 345788888999999875 45554 34677878999999763 444443 4
Q ss_pred hccCCcccEEecCCccccccccccccCcccccccC
Q 011015 203 IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 203 l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
+..+++|+.+++..+ ....-...+.++ .|+.+.
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence 566889999988665 222222334554 555543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.98 E-value=0.0066 Score=52.36 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=64.5
Q ss_pred hhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCC
Q 011015 128 FDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLR 207 (495)
Q Consensus 128 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 207 (495)
+..+...++||++ .+. ...+-..+.-+..|..|+++.|. +..+|..++.+..+..+++..|. .+..|.++++.+
T Consensus 38 i~~~kr~tvld~~-s~r---~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 38 IASFKRVTVLDLS-SNR---LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEP 111 (326)
T ss_pred hhccceeeeehhh-hhH---HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccC
Confidence 4566777888887 555 55555566677778888888877 77788888888888888887776 777888888888
Q ss_pred cccEEecCCccc
Q 011015 208 KLMYLYNEGTSC 219 (495)
Q Consensus 208 ~L~~L~L~~~~~ 219 (495)
.++++++-++.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 888888877743
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.25 E-value=0.14 Score=27.72 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=14.6
Q ss_pred CCCccEEEEeCCcchhHhhhc
Q 011015 457 KTTLQKLWIWGCPILEERCRK 477 (495)
Q Consensus 457 l~~L~~L~l~~~~~l~~~~~~ 477 (495)
+++|++|++++|+.+.+....
T Consensus 1 c~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHH
Confidence 467777888888777766543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.15 E-value=0.0042 Score=61.50 Aligned_cols=186 Identities=20% Similarity=0.160 Sum_probs=98.9
Q ss_pred hhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC-CCcceEEEeeecCcCCCCC--Cchhhhcccccee
Q 011015 274 AGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP-PNLKKLEIYDYRGRRNVVP--INWIMSLTNLRDL 350 (495)
Q Consensus 274 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L 350 (495)
........+.....|..|++++|.+++ .....+.+.+... ..++.|.+..|........ ...+.....++.+
T Consensus 103 ~~~~l~~~l~t~~~L~~L~l~~n~l~~-----~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l 177 (478)
T KOG4308|consen 103 GAEELAQALKTLPTLGQLDLSGNNLGD-----EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTEL 177 (478)
T ss_pred hHHHHHHHhcccccHhHhhcccCCCcc-----HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHH
Confidence 333444556666777777777777542 2233334444443 4566666666655431110 1223346677777
Q ss_pred eecCccCCCC----CCC-CC----CCCccceeeccccccceEeCccccCCCCCCCCCccccCCc-cceeeeccccccccc
Q 011015 351 SLSKWRNCEH----LPP-LG----KLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPK-LKLLDFYIMKELEEW 420 (495)
Q Consensus 351 ~l~~~~~~~~----~~~-~~----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~ 420 (495)
+++.|.+... ++. +. ...++++|.+++|.........+... +...+. +..|++.++. +.+.
T Consensus 178 ~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~--------l~~~~~~~~el~l~~n~-l~d~ 248 (478)
T KOG4308|consen 178 DLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV--------LASGESLLRELDLASNK-LGDV 248 (478)
T ss_pred HHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH--------HhccchhhHHHHHHhcC-cchH
Confidence 7777765321 111 22 35677888887665221111111111 113344 6667766655 3332
Q ss_pred ccccccccccccC-cccceeeecCCcCccC----CCcCCCCCCCccEEEEeCCcchhHh
Q 011015 421 DFGTAIKGEIIIM-PRLSSLSIDGCPKLKA----LPDHLLQKTTLQKLWIWGCPILEER 474 (495)
Q Consensus 421 ~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~----l~~~~~~l~~L~~L~l~~~~~l~~~ 474 (495)
.. ..+...+..+ +.+++++++.|++... +...+..++.++++.+++|+.....
T Consensus 249 g~-~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 249 GV-EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HH-HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 11 1122333344 6778888888877654 4455667788888888888875443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.15 E-value=0.017 Score=57.29 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=30.0
Q ss_pred cccccccCcccceeeecCCcCccCCC----c-CCCCCCCccEEEEeCCcchhHh
Q 011015 426 IKGEIIIMPRLSSLSIDGCPKLKALP----D-HLLQKTTLQKLWIWGCPILEER 474 (495)
Q Consensus 426 l~~~~~~~~~L~~L~l~~c~~~~~l~----~-~~~~l~~L~~L~l~~~~~l~~~ 474 (495)
++..+...+.++.++++.|......+ . .-.+. .++.++++.++.....
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~ 448 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALG 448 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcc
Confidence 34455677788888888865444322 1 12344 8888888888775443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.63 E-value=0.64 Score=25.00 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=8.8
Q ss_pred CCcceEecCCCCcccccch
Q 011015 159 IHLKYLNLCGQTEIEKLPE 177 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~ 177 (495)
++|++|++++|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 345555555554 444443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.63 E-value=0.64 Score=25.00 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=8.8
Q ss_pred CCcceEecCCCCcccccch
Q 011015 159 IHLKYLNLCGQTEIEKLPE 177 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~ 177 (495)
++|++|++++|. +..+|.
T Consensus 2 ~~L~~L~L~~N~-l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPP 19 (26)
T ss_pred CCCCEEECCCCc-CCcCCH
Confidence 345555555554 444443
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.73 E-value=1.2 Score=23.35 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=4.7
Q ss_pred CCcceEecCCCC
Q 011015 159 IHLKYLNLCGQT 170 (495)
Q Consensus 159 ~~L~~L~l~~~~ 170 (495)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 344445555444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.05 E-value=6.5 Score=21.25 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=9.1
Q ss_pred CcceEecCCCCcccccch
Q 011015 160 HLKYLNLCGQTEIEKLPE 177 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~ 177 (495)
+|++|++++|. +..+|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45555555555 555553
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.44 E-value=8.3 Score=38.41 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=17.3
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEcc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLE 140 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~ 140 (495)
.+.+..++|++|++..++. +...-...++|+.|+|+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~L~LS 252 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDA-LSSLSQIAPKLKTLDLS 252 (585)
T ss_pred Ccceeeeecccchhhchhh-hhHHHHhcchhheeecc
Confidence 4555555555555443333 33333444555555555
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.26 E-value=14 Score=20.01 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=8.5
Q ss_pred CCccEEEEcCCccC
Q 011015 105 RRLRSLLVEGGDYS 118 (495)
Q Consensus 105 ~~L~~L~l~~~~~~ 118 (495)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666643
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.86 E-value=17 Score=19.90 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=7.4
Q ss_pred CCcceEecCCCC
Q 011015 159 IHLKYLNLCGQT 170 (495)
Q Consensus 159 ~~L~~L~l~~~~ 170 (495)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356666666666
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.79 E-value=22 Score=35.61 Aligned_cols=64 Identities=17% Similarity=0.067 Sum_probs=32.4
Q ss_pred CcCCcceEecCCCCccccc---chhhhccccCcEeecCCCcCCcccchhhcc--CCcccEEecCCccccc
Q 011015 157 KLIHLKYLNLCGQTEIEKL---PETLCELYNLECLNVSGCWNLRELPRGIGK--LRKLMYLYNEGTSCLR 221 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~--l~~L~~L~L~~~~~~~ 221 (495)
+.+.+..++|++|+ +..+ ..-....|+|.+|+|++|......-.++.+ ...|+.|.+.+|.+.+
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45666666677766 3332 222335567777777776211111112222 2346667777765433
No 89
>PF14162 YozD: YozD-like protein
Probab=32.58 E-value=62 Score=20.66 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHhCCCcce
Q 011015 13 EMQDIGEEYFNILASSSFFQE 33 (495)
Q Consensus 13 ~~~~~~~~~~~~L~~~~ll~~ 33 (495)
+.+++|+-.+++|+.||.+-.
T Consensus 9 DTEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCc
Confidence 468999999999999999854
No 90
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=30.30 E-value=1.1e+02 Score=20.63 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCcceeecCCCCCeeeEEe
Q 011015 17 IGEEYFNILASSSFFQEFKTDGDGKVYGCKM 47 (495)
Q Consensus 17 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~ 47 (495)
.+...+++|+++++++......|++...+..
T Consensus 34 ~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 34 TVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred HHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 3457789999999999988888888666654
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=30.15 E-value=1e+02 Score=30.56 Aligned_cols=118 Identities=12% Similarity=-0.064 Sum_probs=54.4
Q ss_pred cccceeeecCccCCCCCCC---CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccc
Q 011015 345 TNLRDLSLSKWRNCEHLPP---LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWD 421 (495)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 421 (495)
..++.|.+..|...+.... ...-+..+++.+.+-..-........... .......+--+..+.++.|+ +..-.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~---v~k~~~~~g~l~el~ls~~~-lka~l 429 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPP---VSKKSRTHGVLAELSLSPGP-LKAGL 429 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchh---hhhhhcccccccCcccCCCc-ccccH
Confidence 4577888887766655444 33445666666643221000000000000 00000123345666655554 22211
Q ss_pred cccccccccccCcccceeeecCCcCccC----CCcCCCCCCCccEEEEeCC
Q 011015 422 FGTAIKGEIIIMPRLSSLSIDGCPKLKA----LPDHLLQKTTLQKLWIWGC 468 (495)
Q Consensus 422 ~~~~l~~~~~~~~~L~~L~l~~c~~~~~----l~~~~~~l~~L~~L~l~~~ 468 (495)
+..-..+.+-+.+.+|+|+|+..... +|...+.-..++.+-.+.|
T Consensus 430 --~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 430 --ESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred --HHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 11112334567788888888643321 4444444456666665554
No 92
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=24.18 E-value=1.1e+02 Score=22.91 Aligned_cols=38 Identities=5% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHH
Q 011015 14 MQDIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDV 54 (495)
Q Consensus 14 ~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~ 54 (495)
.+..|.+|+++|++++++...+.+ +-..+.+-+--.++
T Consensus 44 ny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~f 81 (95)
T COG3432 44 NYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRF 81 (95)
T ss_pred CHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHH
Confidence 578899999999999977664433 22234554443333
Done!