Query 011015
Match_columns 495
No_of_seqs 257 out of 3595
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.7E-33 3E-37 291.9 19.0 389 79-494 270-767 (768)
2 4eco_A Uncharacterized protein 100.0 2E-31 7E-36 275.1 17.8 355 68-471 198-600 (636)
3 3rgz_A Protein brassinosteroid 100.0 1.3E-31 4.6E-36 282.8 16.0 351 79-470 248-692 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 5.9E-31 2E-35 276.3 19.5 358 68-471 440-840 (876)
5 4eco_A Uncharacterized protein 100.0 2.2E-30 7.5E-35 267.4 17.8 297 130-470 247-578 (636)
6 3v47_A TOLL-like receptor 5B a 100.0 3.6E-29 1.2E-33 249.1 17.0 361 79-471 31-408 (455)
7 4ecn_A Leucine-rich repeat pro 100.0 1.1E-28 3.9E-33 259.1 20.0 335 90-470 437-818 (876)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-29 6.4E-34 260.4 13.8 140 79-229 33-175 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-28 4E-33 251.4 19.4 363 79-470 27-509 (549)
10 3t6q_A CD180 antigen; protein- 100.0 1.7E-28 5.9E-33 253.2 19.3 273 79-379 34-361 (606)
11 3t6q_A CD180 antigen; protein- 100.0 2.3E-28 7.7E-33 252.3 18.6 165 282-470 346-512 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 1.7E-28 6E-33 251.4 16.4 143 79-233 29-175 (570)
13 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-28 2.2E-32 244.2 20.3 342 79-471 22-481 (520)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-27 5.9E-32 254.0 24.0 368 79-470 25-516 (844)
15 4fmz_A Internalin; leucine ric 100.0 1.4E-27 4.8E-32 228.8 20.2 303 104-470 43-345 (347)
16 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-28 8.4E-33 252.1 15.9 111 71-194 51-164 (606)
17 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-28 2E-32 252.6 18.3 155 79-245 26-185 (680)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-27 3.9E-32 242.3 17.5 144 81-243 3-150 (520)
19 3o6n_A APL1; leucine-rich repe 100.0 5.4E-27 1.8E-31 228.4 21.4 308 104-473 44-354 (390)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4E-27 1.4E-31 240.4 21.0 341 79-471 53-510 (562)
21 2id5_A Lingo-1, leucine rich r 99.9 3.7E-27 1.3E-31 235.9 19.8 265 82-378 15-282 (477)
22 1o6v_A Internalin A; bacterial 99.9 1.3E-26 4.4E-31 230.9 22.7 321 79-471 47-388 (466)
23 1o6v_A Internalin A; bacterial 99.9 1.7E-26 5.9E-31 230.0 20.8 301 79-448 69-389 (466)
24 3v47_A TOLL-like receptor 5B a 99.9 1.9E-27 6.7E-32 236.6 13.5 341 69-451 47-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-26 4.4E-31 236.6 19.5 350 80-471 33-486 (562)
26 1ziw_A TOLL-like receptor 3; i 99.9 7.4E-26 2.5E-30 236.7 24.4 64 403-470 453-516 (680)
27 3oja_B Anopheles plasmodium-re 99.9 2.5E-26 8.6E-31 235.8 19.7 308 104-473 50-360 (597)
28 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-26 2.3E-30 241.7 22.8 345 81-470 7-393 (844)
29 2z63_A TOLL-like receptor 4, v 99.9 1.4E-26 4.7E-31 237.3 16.2 149 83-245 12-163 (570)
30 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-26 7.8E-31 234.5 17.1 323 83-445 10-421 (549)
31 4fmz_A Internalin; leucine ric 99.9 7.5E-26 2.6E-30 216.8 19.2 302 79-447 45-346 (347)
32 2id5_A Lingo-1, leucine rich r 99.9 9E-26 3.1E-30 225.9 18.2 296 79-415 33-331 (477)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-25 6.4E-30 220.8 20.3 302 79-446 43-351 (457)
34 3o6n_A APL1; leucine-rich repe 99.9 1.1E-25 3.7E-30 219.2 17.2 306 79-448 46-353 (390)
35 3oja_B Anopheles plasmodium-re 99.9 4.3E-25 1.5E-29 226.6 16.2 306 79-448 52-359 (597)
36 4g8a_A TOLL-like receptor 4; l 99.9 1E-24 3.6E-29 226.3 18.3 361 79-471 53-580 (635)
37 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-25 1.6E-29 207.5 13.8 248 79-380 51-303 (313)
38 2ft3_A Biglycan; proteoglycan, 99.9 4.3E-24 1.5E-28 203.1 17.4 134 320-469 194-331 (332)
39 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-24 2.1E-28 210.0 18.5 306 104-470 41-351 (457)
40 4fcg_A Uncharacterized protein 99.9 5.3E-24 1.8E-28 201.5 17.2 231 131-468 80-311 (328)
41 1ogq_A PGIP-2, polygalacturona 99.9 6.6E-25 2.2E-29 206.5 10.8 132 105-241 50-184 (313)
42 1xku_A Decorin; proteoglycan, 99.9 1.5E-23 5.2E-28 199.1 17.5 274 132-469 52-330 (330)
43 1xku_A Decorin; proteoglycan, 99.9 1.4E-23 4.9E-28 199.3 16.7 295 79-445 32-330 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-23 6.7E-28 216.7 17.0 352 86-470 39-554 (635)
45 1z7x_W Ribonuclease inhibitor; 99.9 4.2E-26 1.4E-30 227.4 -3.7 370 79-473 4-413 (461)
46 1jl5_A Outer protein YOPM; leu 99.9 2.2E-23 7.6E-28 205.8 11.5 114 132-267 91-204 (454)
47 4fcg_A Uncharacterized protein 99.9 4.3E-23 1.5E-27 195.2 10.8 220 104-376 80-309 (328)
48 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-22 1.3E-26 189.6 17.3 267 106-472 34-308 (332)
49 3ogk_B Coronatine-insensitive 99.9 5.6E-24 1.9E-28 218.9 3.6 354 79-471 113-526 (592)
50 2z80_A TOLL-like receptor 2, v 99.9 3.2E-22 1.1E-26 191.9 15.3 279 104-471 30-314 (353)
51 1z7x_W Ribonuclease inhibitor; 99.9 2.6E-25 9E-30 221.6 -8.3 369 79-470 29-439 (461)
52 3ogk_B Coronatine-insensitive 99.9 2.3E-23 8E-28 214.3 2.4 361 79-470 74-500 (592)
53 2z66_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 184.4 10.4 244 82-378 11-258 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 8.1E-22 2.8E-26 183.1 8.6 225 81-360 14-240 (285)
55 1jl5_A Outer protein YOPM; leu 99.8 3.2E-21 1.1E-25 190.4 12.4 314 79-470 12-349 (454)
56 2z80_A TOLL-like receptor 2, v 99.8 1.7E-21 5.7E-26 186.8 9.0 268 83-379 36-312 (353)
57 2z66_A Variable lymphocyte rec 99.8 1.4E-20 4.6E-25 176.8 15.0 114 339-470 144-260 (306)
58 3zyj_A Leucine-rich repeat-con 99.8 3.9E-20 1.3E-24 182.7 18.0 42 429-470 250-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.8 4.4E-20 1.5E-24 183.0 18.0 111 341-470 192-302 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-19 4E-24 184.7 20.2 110 80-217 42-151 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-21 1.2E-25 181.6 7.5 215 103-377 32-246 (317)
62 3zyi_A Leucine-rich repeat-con 99.8 1.5E-20 5.2E-25 186.3 12.1 241 80-379 56-301 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 2.2E-20 7.4E-25 184.6 12.7 241 80-379 45-290 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-21 3.8E-26 184.9 1.0 250 122-447 24-275 (317)
65 2p1m_B Transport inhibitor res 99.8 1.7E-21 5.9E-26 200.4 2.1 362 79-473 106-521 (594)
66 1wwl_A Monocyte differentiatio 99.8 5.6E-21 1.9E-25 179.7 3.9 35 434-470 274-308 (312)
67 3oja_A Leucine-rich immune mol 99.8 1.2E-19 4E-24 180.9 12.5 231 89-379 18-248 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-19 1.8E-23 164.0 15.7 77 135-218 14-91 (285)
69 3g06_A SSPH2 (leucine-rich rep 99.8 5.1E-19 1.7E-23 180.0 16.4 258 105-471 40-297 (622)
70 1wwl_A Monocyte differentiatio 99.8 5.4E-21 1.8E-25 179.8 1.3 85 157-242 93-184 (312)
71 3oja_A Leucine-rich immune mol 99.8 4.5E-20 1.5E-24 184.0 5.6 188 133-378 35-224 (487)
72 2p1m_B Transport inhibitor res 99.8 2.9E-21 9.9E-26 198.7 -3.8 358 79-471 67-494 (594)
73 2ast_B S-phase kinase-associat 99.8 8.7E-20 3E-24 173.7 4.3 255 106-455 48-314 (336)
74 2z62_A TOLL-like receptor 4, v 99.8 2.5E-18 8.6E-23 158.7 12.3 208 105-360 28-239 (276)
75 3rfs_A Internalin B, repeat mo 99.8 7.8E-18 2.7E-22 154.9 14.3 177 128-378 37-215 (272)
76 3rfs_A Internalin B, repeat mo 99.7 2.3E-17 7.8E-22 151.7 13.2 230 132-461 19-249 (272)
77 1h6u_A Internalin H; cell adhe 99.7 2.2E-17 7.7E-22 154.5 13.2 101 104-218 40-140 (308)
78 2ast_B S-phase kinase-associat 99.7 1.3E-18 4.3E-23 165.7 4.1 252 79-363 48-311 (336)
79 2z62_A TOLL-like receptor 4, v 99.7 1.7E-17 5.9E-22 153.1 11.3 105 132-241 28-134 (276)
80 1p9a_G Platelet glycoprotein I 99.7 4.4E-17 1.5E-21 151.0 13.9 126 103-241 8-134 (290)
81 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 4.2E-21 148.0 16.1 59 318-378 99-158 (290)
82 2ca6_A RAN GTPase-activating p 99.7 5.4E-19 1.8E-23 171.5 -0.0 142 102-244 29-200 (386)
83 2o6q_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 149.7 12.3 121 106-238 17-140 (270)
84 4glp_A Monocyte differentiatio 99.7 3.4E-17 1.2E-21 153.7 10.9 228 104-378 63-304 (310)
85 2ca6_A RAN GTPase-activating p 99.7 1.2E-18 4.1E-23 169.0 -0.1 269 124-443 24-339 (386)
86 2o6q_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 146.7 13.2 60 317-378 155-215 (270)
87 2xwt_C Thyrotropin receptor; s 99.7 2.2E-16 7.5E-21 142.3 14.2 81 160-241 32-115 (239)
88 2xwt_C Thyrotropin receptor; s 99.7 8.8E-17 3E-21 144.9 11.2 104 105-217 31-140 (239)
89 3goz_A Leucine-rich repeat-con 99.7 3E-17 1E-21 157.6 6.1 152 85-244 5-180 (362)
90 4glp_A Monocyte differentiatio 99.7 1.4E-16 4.9E-21 149.4 10.5 59 316-377 194-260 (310)
91 4ay9_X Follicle-stimulating ho 99.7 5.9E-16 2E-20 147.8 14.0 99 320-443 155-255 (350)
92 1h6u_A Internalin H; cell adhe 99.7 1.2E-15 4.2E-20 142.7 14.6 190 79-333 42-231 (308)
93 3goz_A Leucine-rich repeat-con 99.7 2.2E-17 7.6E-22 158.5 2.7 266 109-419 2-298 (362)
94 3m19_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 135.1 12.8 99 134-238 16-114 (251)
95 4ezg_A Putative uncharacterize 99.6 8.3E-15 2.8E-19 127.6 11.9 149 79-244 45-194 (197)
96 1h6t_A Internalin B; cell adhe 99.6 6.1E-15 2.1E-19 136.7 10.7 120 104-239 45-164 (291)
97 3m19_A Variable lymphocyte rec 99.6 6.6E-15 2.2E-19 133.6 10.0 150 80-244 16-168 (251)
98 4ay9_X Follicle-stimulating ho 99.6 2.5E-14 8.7E-19 136.4 13.1 100 287-413 155-255 (350)
99 4ezg_A Putative uncharacterize 99.5 1.1E-14 3.9E-19 126.7 8.9 130 104-244 43-172 (197)
100 1m9s_A Internalin B; cell inva 99.5 4.5E-15 1.5E-19 150.8 6.6 174 128-360 39-212 (605)
101 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.2E-19 146.0 10.9 170 104-333 42-211 (605)
102 1h6t_A Internalin B; cell adhe 99.5 5.3E-14 1.8E-18 130.3 12.3 145 79-244 47-191 (291)
103 2o6s_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 122.2 13.1 67 148-218 19-87 (208)
104 3e6j_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 127.4 9.4 149 81-244 22-172 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.5 2.9E-14 9.9E-19 126.3 9.4 153 81-245 14-167 (220)
106 2v9t_B SLIT homolog 2 protein 99.5 4.1E-14 1.4E-18 125.4 8.7 150 82-245 15-166 (220)
107 2ell_A Acidic leucine-rich nuc 99.5 8.4E-14 2.9E-18 117.9 9.6 133 104-244 23-160 (168)
108 1xeu_A Internalin C; cellular 99.5 2.3E-13 7.8E-18 124.0 11.8 145 79-245 42-186 (263)
109 1xeu_A Internalin C; cellular 99.5 5.3E-14 1.8E-18 128.3 7.6 166 131-379 18-183 (263)
110 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 116.0 6.9 128 104-239 16-148 (149)
111 3cvr_A Invasion plasmid antige 99.5 1E-13 3.4E-18 139.4 9.1 183 106-362 60-247 (571)
112 1dce_A Protein (RAB geranylger 99.4 2.8E-15 9.4E-20 151.5 -3.0 78 284-374 484-566 (567)
113 3cvr_A Invasion plasmid antige 99.4 1.6E-13 5.3E-18 138.0 9.7 174 133-379 60-241 (571)
114 2o6s_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 118.1 10.4 130 104-242 27-159 (208)
115 2ell_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 114.1 7.0 131 79-225 25-164 (168)
116 2xot_A Amphoterin-induced prot 99.4 2.2E-13 7.5E-18 130.5 6.3 83 130-217 62-146 (361)
117 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-12 4.2E-17 111.5 10.1 130 103-244 17-153 (176)
118 2v9t_B SLIT homolog 2 protein 99.4 1E-12 3.5E-17 116.3 9.7 129 79-219 33-164 (220)
119 2xot_A Amphoterin-induced prot 99.4 7.9E-13 2.7E-17 126.6 8.9 154 79-244 40-202 (361)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.2E-17 115.2 10.0 132 79-221 33-167 (220)
121 2je0_A Acidic leucine-rich nuc 99.4 5.1E-13 1.8E-17 110.5 5.9 123 79-216 18-149 (149)
122 3e6j_A Variable lymphocyte rec 99.4 2.3E-12 7.7E-17 114.9 10.5 129 79-220 41-172 (229)
123 3sb4_A Hypothetical leucine ri 99.4 5.2E-12 1.8E-16 119.3 13.4 102 343-465 224-328 (329)
124 4b8c_D Glucose-repressible alc 99.3 2.6E-13 9E-18 141.4 4.1 112 125-243 217-328 (727)
125 1w8a_A SLIT protein; signaling 99.3 2.1E-12 7.1E-17 111.7 8.7 107 133-243 30-138 (192)
126 4b8c_D Glucose-repressible alc 99.3 1E-12 3.5E-17 137.0 7.9 132 103-244 222-354 (727)
127 1dce_A Protein (RAB geranylger 99.3 5.6E-14 1.9E-18 141.9 -1.9 198 79-292 350-566 (567)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3E-12 1E-16 109.1 7.6 126 79-219 20-152 (176)
129 2wfh_A SLIT homolog 2 protein 99.3 7.5E-12 2.5E-16 108.2 9.8 103 106-217 32-136 (193)
130 1w8a_A SLIT protein; signaling 99.3 6.1E-12 2.1E-16 108.7 8.1 128 81-221 11-140 (192)
131 2wfh_A SLIT homolog 2 protein 99.3 1.8E-11 6.3E-16 105.7 10.1 127 108-245 13-140 (193)
132 1ds9_A Outer arm dynein; leuci 99.3 2.8E-13 9.6E-18 117.9 -1.7 119 90-224 37-157 (198)
133 1ds9_A Outer arm dynein; leuci 99.2 1.4E-13 4.8E-18 119.9 -6.1 134 104-245 17-154 (198)
134 2o6r_A Variable lymphocyte rec 99.2 8.3E-11 2.9E-15 100.2 10.2 124 82-220 11-137 (177)
135 3sb4_A Hypothetical leucine ri 99.2 3.8E-10 1.3E-14 106.4 15.4 125 285-441 201-328 (329)
136 2o6r_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 97.4 9.7 127 107-245 9-138 (177)
137 4fdw_A Leucine rich hypothetic 99.1 1.1E-08 3.9E-13 98.6 19.7 127 319-469 248-381 (401)
138 2r9u_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 94.0 7.7 100 108-219 15-117 (174)
139 3g39_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 93.3 7.7 101 107-219 11-114 (170)
140 3g39_A Variable lymphocyte rec 99.0 2.4E-09 8.2E-14 90.2 9.6 104 134-244 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 90.5 9.6 103 135-244 15-118 (174)
142 4fs7_A Uncharacterized protein 98.9 2.2E-08 7.6E-13 96.8 17.3 307 101-468 67-376 (394)
143 4fdw_A Leucine rich hypothetic 98.9 1.5E-08 5E-13 97.8 14.7 242 104-379 112-356 (401)
144 4fs7_A Uncharacterized protein 98.9 2.9E-08 1E-12 96.0 15.7 324 71-463 66-393 (394)
145 3un9_A NLR family member X1; l 98.8 1.9E-09 6.6E-14 102.9 2.7 134 104-242 71-222 (372)
146 4gt6_A Cell surface protein; l 98.7 2.3E-07 7.7E-12 89.7 15.0 105 104-217 62-170 (394)
147 2ifg_A High affinity nerve gro 98.7 4.9E-08 1.7E-12 92.7 8.9 91 124-219 24-115 (347)
148 2ifg_A High affinity nerve gro 98.6 2.7E-08 9.4E-13 94.4 6.5 102 136-245 12-117 (347)
149 3un9_A NLR family member X1; l 98.6 3E-09 1E-13 101.5 -2.1 85 131-219 71-167 (372)
150 4gt6_A Cell surface protein; l 98.5 6.8E-06 2.3E-10 79.3 20.5 124 103-236 85-210 (394)
151 2ra8_A Uncharacterized protein 98.5 7.6E-09 2.6E-13 98.0 -0.8 66 402-470 250-319 (362)
152 2ra8_A Uncharacterized protein 98.4 7.5E-08 2.6E-12 91.1 3.4 41 317-358 277-320 (362)
153 3e4g_A ATP synthase subunit S, 98.4 3E-08 1E-12 82.4 0.2 67 402-473 83-154 (176)
154 3e4g_A ATP synthase subunit S, 98.4 4.3E-08 1.5E-12 81.5 0.8 93 345-449 61-154 (176)
155 1io0_A Tropomodulin; LRR prote 98.2 8.7E-07 3E-11 75.5 5.3 119 95-219 26-163 (185)
156 3rw6_A Nuclear RNA export fact 98.2 7.4E-07 2.5E-11 79.9 3.2 81 156-238 167-258 (267)
157 4h09_A Hypothetical leucine ri 98.1 0.00013 4.4E-09 69.8 16.8 56 316-376 237-294 (379)
158 1io0_A Tropomodulin; LRR prote 98.0 1.3E-06 4.4E-11 74.4 2.1 121 121-244 25-164 (185)
159 3rw6_A Nuclear RNA export fact 98.0 1.2E-05 4.1E-10 72.0 7.0 109 103-214 139-258 (267)
160 4h09_A Hypothetical leucine ri 97.7 0.001 3.4E-08 63.6 15.9 107 280-412 234-341 (379)
161 2a5y_B CED-4; apoptosis; HET: 97.1 0.00013 4.3E-09 73.5 1.9 59 1-63 411-472 (549)
162 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0077 2.6E-07 50.8 4.6 118 95-217 31-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 95.0 0.029 9.9E-07 47.3 5.3 91 122-217 31-136 (197)
164 3rfe_A Platelet glycoprotein I 94.2 0.064 2.2E-06 42.0 5.1 34 160-194 32-66 (130)
165 3rfe_A Platelet glycoprotein I 92.1 0.26 9E-06 38.4 5.7 52 163-218 12-66 (130)
166 3sfz_A APAF-1, apoptotic pepti 85.3 0.88 3E-05 50.4 5.8 45 15-62 408-452 (1249)
167 1z6t_A APAF-1, apoptotic prote 69.3 3.7 0.00013 41.2 4.3 40 16-58 409-448 (591)
168 1vt4_I APAF-1 related killer D 54.0 7.5 0.00026 41.6 3.3 35 16-55 402-436 (1221)
169 2lz0_A Uncharacterized protein 23.3 1.2E+02 0.0042 21.7 4.6 37 339-376 14-51 (100)
170 2lz0_A Uncharacterized protein 21.8 67 0.0023 23.1 3.0 14 155-168 16-29 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-33 Score=291.88 Aligned_cols=389 Identities=19% Similarity=0.162 Sum_probs=260.9
Q ss_pred ceEEEEEEeccCC-CcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccc-cc
Q 011015 79 KVLHLMLTVDVGT-SVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN-IE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~-~~ 156 (495)
+++++++.+|.+. .+|..+.. .+++|++|++++|. +.+.+|..|..+++|++|+++ ++.. ...+|.. +.
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~---~~~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-~n~l--~~~ip~~~l~ 340 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSG---ACDTLTGLDLSGNH---FYGAVPPFFGSCSLLESLALS-SNNF--SGELPMDTLL 340 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCT---TCTTCSEEECCSSE---EEECCCGGGGGCTTCCEEECC-SSEE--EEECCHHHHT
T ss_pred CCCEEECcCCccCCccCHHHHh---hcCcCCEEECcCCc---CCCccchHHhcCCCccEEECC-CCcc--cCcCCHHHHh
Confidence 7888888888776 35555544 24889999999987 445577778889999999998 6551 3366655 88
Q ss_pred CcCCcceEecCCCCcccccchhhhccc-cCcEeecCCCcCCcccchhhcc--CCcccEEecCCccccccccccccCcccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELY-NLECLNVSGCWNLRELPRGIGK--LRKLMYLYNEGTSCLRYLPVGIGELISL 233 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~--l~~L~~L~L~~~~~~~~~~~~i~~l~~L 233 (495)
.+++|++|++++|.+.+.+|..+..++ +|++|++++|...+.+|..+.. +++|++|++++|.+.+.+|..++.+++|
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence 889999999999986668888888887 8888888888865667777666 7788888888887777788888888888
Q ss_pred cccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhh
Q 011015 234 REVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLE 313 (495)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 313 (495)
+.|++..|.... .....+..+++|+.|.+........ .+..+..+++|+.|+++.|.+++ ..+.
T Consensus 421 ~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~---------~~p~ 484 (768)
T 3rgz_A 421 VSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTG---------EIPS 484 (768)
T ss_dssp CEEECCSSEEES---CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCS---------CCCG
T ss_pred CEEECcCCcccC---cccHHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccC---------cCCH
Confidence 888888776652 2334566677777777665433211 12345667788888888887532 2344
Q ss_pred cCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCC
Q 011015 314 ALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVE 392 (495)
Q Consensus 314 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (495)
.+..+++|+.|++++|.... ..|.++..+++|+.|++++|.+.+.+|. ++.+++|++|++++|.....++..+....
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTG--EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred HHhcCCCCCEEEccCCccCC--cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 56667788888888877664 3377788888888888888877776666 77788888888877653322221110000
Q ss_pred C--------------------------------------C--------------------CCCCccccCCccceeeeccc
Q 011015 393 S--------------------------------------D--------------------TDGSSVIAFPKLKLLDFYIM 414 (495)
Q Consensus 393 ~--------------------------------------~--------------------~~~~~~~~~~~L~~L~l~~~ 414 (495)
. . ........+++|+.|+++++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 0 0 00001123444444444443
Q ss_pred c------------------cccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch-----
Q 011015 415 K------------------ELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL----- 471 (495)
Q Consensus 415 ~------------------~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l----- 471 (495)
. .|..+.+++.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|+..
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 2 03334467888999999999999999999988889999999999999999988541
Q ss_pred ----------------------hHhhhccCCCCCCCCCCCCcccc
Q 011015 472 ----------------------EERCRKETGEDWPLIRHIPKISI 494 (495)
Q Consensus 472 ----------------------~~~~~~~~~~~~~~~~~i~~~~~ 494 (495)
-..|....+++|++++|+|.++-
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred chhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccCC
Confidence 01477788889999999998753
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2e-31 Score=275.12 Aligned_cols=355 Identities=12% Similarity=0.111 Sum_probs=270.3
Q ss_pred cCCCCCCCCCCceEEEEEEeccCCC------------------cchhhh--cccccCCCccEEEEcCCccCcccccchHH
Q 011015 68 IPGGMSSFEQKKVLHLMLTVDVGTS------------------VPIAIW--NNVKRMRRLRSLLVEGGDYSWSSKVLPQL 127 (495)
Q Consensus 68 ~~~~~~~~~~~~~~~l~l~~~~~~~------------------~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 127 (495)
+|..+.... +++.|++.+|.+.. +|..+. + +++|++|++++|. +.+.+|..
T Consensus 198 ip~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~----l~~L~~L~L~~n~---l~~~~p~~ 268 (636)
T 4eco_A 198 VSKAVMRLT--KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN----LKDLTDVEVYNCP---NLTKLPTF 268 (636)
T ss_dssp ECGGGGGCT--TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEECCT---TCSSCCTT
T ss_pred CCHHHhccc--CCCEEECcCCccccccccccccccccchhcccCchhhhhcc----cCCCCEEEecCCc---CCccChHH
Confidence 666666666 89999999999887 565555 5 9999999999998 44567888
Q ss_pred hhcCCeeeEEEccCccCccccc-cccccccCc------CCcceEecCCCCcccccch--hhhccccCcEeecCCCcCCcc
Q 011015 128 FDKLTCLRALTLETHCCFDFIQ-KIPKNIEKL------IHLKYLNLCGQTEIEKLPE--TLCELYNLECLNVSGCWNLRE 198 (495)
Q Consensus 128 ~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~ 198 (495)
+..+++|++|+++ ++.. +.. .+|..++.+ ++|++|++++|. +..+|. .++.+++|++|++++|...+.
T Consensus 269 l~~l~~L~~L~Ls-~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 269 LKALPEMQLINVA-CNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTCSSCCEEECT-TCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HhcCCCCCEEECc-CCCC-CccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccc
Confidence 9999999999999 5430 144 577777776 899999999999 558988 899999999999999984448
Q ss_pred cchhhccCCcccEEecCCccccccccccccCccc-ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhh
Q 011015 199 LPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELIS-LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEV 277 (495)
Q Consensus 199 lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~ 277 (495)
+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++..|.+.. .+..+ ....+++|+.+++........
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~-~~~~l~~L~~L~Ls~N~l~~~---- 417 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIF-DAKSVSVMSAIDFSYNEIGSV---- 417 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCC-CTTCSSCEEEEECCSSCTTTT----
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhh-hhcccCccCEEECcCCcCCCc----
Confidence 88 8899999999999999665 88888999999 9999998887663 22211 112234667666665432211
Q ss_pred Hhhccc-------cccccceEEEEEecCCCCCCccchhHHHhhc-CCCCCCcceEEEeeecCcCCCCCCchhhhc-----
Q 011015 278 RRAELE-------KQKYLVELGLYFDQAGRRENEEDEDERLLEA-LGPPPNLKKLEIYDYRGRRNVVPINWIMSL----- 344 (495)
Q Consensus 278 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----- 344 (495)
.+..+. .+++|+.|++++|.++. ++.. +..+++|+.|++++|.+.. +|+..+...
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~----------lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISK----------FPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFK 485 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCS----------CCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECT
T ss_pred chhhhcccccccccCCCCCEEECcCCccCc----------CCHHHHccCCCCCEEECCCCCCCC--cCHHHhcccccccc
Confidence 112233 56789999999988532 2222 2347889999999998886 755444433
Q ss_pred --cccceeeecCccCCCCCCC-CC--CCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccc
Q 011015 345 --TNLRDLSLSKWRNCEHLPP-LG--KLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEE 419 (495)
Q Consensus 345 --~~L~~L~l~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 419 (495)
++|+.|++++|.+. .+|. +. .+++|++|++++|. ++.++. .+..+++|+.|++++|..+..
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTC
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCccccc
Confidence 39999999999888 5555 55 89999999999665 221221 234789999999999887888
Q ss_pred cccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 420 WDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 420 ~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
+.+.+.+|..+..+++|++|++++|.. +.+|..+. ++|++|++++|+..
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 888899999999999999999999886 88997765 89999999999763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.3e-31 Score=282.81 Aligned_cols=351 Identities=18% Similarity=0.101 Sum_probs=275.0
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhc-CCeeeEEEccCccCccccccccccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDK-LTCLRALTLETHCCFDFIQKIPKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~l~~~~~~ 157 (495)
+++.+++.+|.+....... . +++|++|++++|. +.+.+|..+.. +++|++|+++ ++.. ...+|..++.
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~-~----l~~L~~L~L~~n~---l~~~ip~~~~~~~~~L~~L~Ls-~n~l--~~~~p~~~~~ 316 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL-P----LKSLQYLSLAENK---FTGEIPDFLSGACDTLTGLDLS-GNHF--YGAVPPFFGS 316 (768)
T ss_dssp SCCEEECCSSCCEESCCCC-C----CTTCCEEECCSSE---EEESCCCCSCTTCTTCSEEECC-SSEE--EECCCGGGGG
T ss_pred CCCEEECCCCcccCccCcc-c----cCCCCEEECcCCc---cCCccCHHHHhhcCcCCEEECc-CCcC--CCccchHHhc
Confidence 8899999999886433222 4 9999999999998 44446665655 5999999999 6652 4467888999
Q ss_pred cCCcceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhccCC-cccEEecCCccccccccccccC--cccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGKLR-KLMYLYNEGTSCLRYLPVGIGE--LISL 233 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~L~~~~~~~~~~~~i~~--l~~L 233 (495)
+++|++|++++|.+.+.+|.. +..+++|++|++++|...+.+|..+..++ +|+.|++++|.+.+..|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 999999999999966689876 89999999999999985568999999987 9999999999888888888776 8899
Q ss_pred cccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhh
Q 011015 234 REVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLE 313 (495)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 313 (495)
+.|++..|.... .....+..+++|+.|++....... ..+..+..+++|+.|+++.|.+.+ ..+.
T Consensus 397 ~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~---------~~p~ 460 (768)
T 3rgz_A 397 QELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEG---------EIPQ 460 (768)
T ss_dssp CEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCS---------CCCG
T ss_pred cEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccC---------cCCH
Confidence 999999887763 344556778888888876543211 122457788999999999998542 3455
Q ss_pred cCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCC
Q 011015 314 ALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVE 392 (495)
Q Consensus 314 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (495)
.+..+++|+.|++++|.+.. ..|.++..+++|+.|++++|.+.+.+|. ++.+++|++|++++|.....++..+
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---- 534 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL---- 534 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG----
T ss_pred HHcCCCCceEEEecCCcccC--cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH----
Confidence 66778999999999998875 3388899999999999999999988887 8999999999999876443333322
Q ss_pred CCCCCCccccCCccceeeeccccc--------------------------------------------------------
Q 011015 393 SDTDGSSVIAFPKLKLLDFYIMKE-------------------------------------------------------- 416 (495)
Q Consensus 393 ~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------------------------------- 416 (495)
..+++|+.|++++|.-
T Consensus 535 --------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 535 --------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp --------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred --------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 3678888888877641
Q ss_pred --------------------------------ccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEE
Q 011015 417 --------------------------------LEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLW 464 (495)
Q Consensus 417 --------------------------------l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~ 464 (495)
+..+.+.+.+|..++.+++|+.|++++|...+.+|..++.+++|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 112234456777777888888888888777777887788888888888
Q ss_pred EeCCcc
Q 011015 465 IWGCPI 470 (495)
Q Consensus 465 l~~~~~ 470 (495)
+++|+.
T Consensus 687 Ls~N~l 692 (768)
T 3rgz_A 687 LSSNKL 692 (768)
T ss_dssp CCSSCC
T ss_pred CCCCcc
Confidence 888765
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.9e-31 Score=276.34 Aligned_cols=358 Identities=14% Similarity=0.131 Sum_probs=264.8
Q ss_pred cCCCCCCCCCCceEEEEEEeccCCC------------------cchhhhcccccCCCccEEEEcCCccCcccccchHHhh
Q 011015 68 IPGGMSSFEQKKVLHLMLTVDVGTS------------------VPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFD 129 (495)
Q Consensus 68 ~~~~~~~~~~~~~~~l~l~~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 129 (495)
+|..+.... +++.|++++|.+.. +|..+. |.++++|++|++++|. +.+.+|..|.
T Consensus 440 IP~~l~~L~--~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~--f~~L~~L~~L~Ls~N~---l~~~iP~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLT--KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS--WSNLKDLTDVELYNCP---NMTQLPDFLY 512 (876)
T ss_dssp ECGGGGGCT--TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC--GGGCTTCCEEEEESCT---TCCSCCGGGG
T ss_pred hhHHHhcCC--CCCEEECcCCcCCCCcccccccccccccccccCChhhh--hccCCCCCEEECcCCC---CCccChHHHh
Confidence 565566666 88999999998886 555543 1139999999999987 4455788899
Q ss_pred cCCeeeEEEccCccC-ccccc-cccccccCcC-------CcceEecCCCCcccccch--hhhccccCcEeecCCCcCCcc
Q 011015 130 KLTCLRALTLETHCC-FDFIQ-KIPKNIEKLI-------HLKYLNLCGQTEIEKLPE--TLCELYNLECLNVSGCWNLRE 198 (495)
Q Consensus 130 ~l~~L~~L~l~~~~~-~~~~~-~l~~~~~~l~-------~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~ 198 (495)
.+++|++|+++ ++. . .. .+|..++.++ +|++|++++|. +..+|. .++.+++|++|++++|. +..
T Consensus 513 ~L~~L~~L~Ls-~N~~l--sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 513 DLPELQSLNIA-CNRGI--SAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp GCSSCCEEECT-TCTTS--CHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred CCCCCCEEECc-CCCCc--ccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 99999999999 543 2 33 4676666554 99999999999 558888 89999999999999998 558
Q ss_pred cchhhccCCcccEEecCCccccccccccccCccc-ccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhh
Q 011015 199 LPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELIS-LREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEV 277 (495)
Q Consensus 199 lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~ 277 (495)
+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++..|.+.. .+..+. ....++|+.|.+............
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFN-AKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCC-TTCSSCEEEEECCSSCTTTTSSSC
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-Cchhhh-ccccCCCCEEECcCCcCCCccccc
Confidence 88 8899999999999999765 88888999998 9999998887653 221111 112233666666554322111000
Q ss_pred Hhhccc--cccccceEEEEEecCCCCCCccchhHHHhhcC-CCCCCcceEEEeeecCcCCCCCCchhh-------hcccc
Q 011015 278 RRAELE--KQKYLVELGLYFDQAGRRENEEDEDERLLEAL-GPPPNLKKLEIYDYRGRRNVVPINWIM-------SLTNL 347 (495)
Q Consensus 278 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L 347 (495)
...+. .+++|+.|+++.|.++. ++..+ ..+++|+.|++++|.+.. +|+..+. ++++|
T Consensus 664 -~~~l~~~~~~~L~~L~Ls~N~L~~----------lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 664 -SCSMDDYKGINASTVTLSYNEIQK----------FPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp -SSCTTTCCCCCEEEEECCSSCCCS----------CCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGC
T ss_pred -hhhhccccCCCcCEEEccCCcCCc----------cCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCc
Confidence 01111 34589999999988531 23332 357899999999998876 7443333 33499
Q ss_pred ceeeecCccCCCCCCC-CC--CCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccccccc
Q 011015 348 RDLSLSKWRNCEHLPP-LG--KLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGT 424 (495)
Q Consensus 348 ~~L~l~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 424 (495)
+.|++++|.+. .+|. +. .+++|+.|+|++|. ++.++. .+..+++|+.|++++|+.+..+.+.+
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccch------------hhhcCCCCCEEECCCCCCcccccccc
Confidence 99999999887 5555 55 89999999999664 221221 23478999999999988888888889
Q ss_pred ccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 425 AIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 425 ~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
.+|..+..+++|++|++++|.. +.+|..+. ++|+.|++++|+..
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 9999999999999999999986 88998765 79999999999863
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.2e-30 Score=267.43 Aligned_cols=297 Identities=14% Similarity=0.167 Sum_probs=168.5
Q ss_pred cCCeeeEEEccCccCccccccccccccCcCCcceEecCCCC-ccc-ccchhhhcc------ccCcEeecCCCcCCcccch
Q 011015 130 KLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQT-EIE-KLPETLCEL------YNLECLNVSGCWNLRELPR 201 (495)
Q Consensus 130 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~L~~~~~~~~lp~ 201 (495)
.+++|++|+++ +|.. ...+|..++++++|++|++++|. +.+ .+|..++.+ ++|++|++++|. +..+|.
T Consensus 247 ~l~~L~~L~L~-~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVY-NCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPV 322 (636)
T ss_dssp GCTTCCEEEEE-CCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCC
T ss_pred ccCCCCEEEec-CCcC--CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCc
Confidence 44445555554 3221 33344444444555555555444 333 344444443 445555555444 334444
Q ss_pred --hhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccc-cCCceeeccCCCCChhhhH
Q 011015 202 --GIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNL-LRKCSIRGLGGVSDAGEVR 278 (495)
Q Consensus 202 --~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-L~~l~~~~~~~~~~~~~~~ 278 (495)
.++.+++|++|++++|.+.+.+| .++.+++|+.|++..|.+.. ....+..+++ |+.|++....... .
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~~L~~L~Ls~N~l~~-----l 392 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKLKY-----I 392 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE----CCTTSEEECTTCCEEECCSSCCSS-----C
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc----ccHhhhhhcccCcEEEccCCcCcc-----c
Confidence 44455555555555554443444 44444555555444443321 1122333444 4444444322111 0
Q ss_pred hhcccc--ccccceEEEEEecCCCCCCccchhHHHhhcCC-------CCCCcceEEEeeecCcCCCCCCchhhhccccce
Q 011015 279 RAELEK--QKYLVELGLYFDQAGRRENEEDEDERLLEALG-------PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRD 349 (495)
Q Consensus 279 ~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 349 (495)
+..+.. +++|+.|+++.|.+++ ..+..+. .+++|+.|++++|.+.. +|+..+..+++|+.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~---------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGS---------VDGKNFDPLDPTPFKGINVSSINLSNNQISK--FPKELFSTGSPLSS 461 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTT---------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--CCTHHHHTTCCCSE
T ss_pred chhhhhcccCccCEEECcCCcCCC---------cchhhhcccccccccCCCCCEEECcCCccCc--CCHHHHccCCCCCE
Confidence 112222 2256666666665321 2223333 55688889998888876 75555667889999
Q ss_pred eeecCccCCCCCCC--CCC-------CCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccc
Q 011015 350 LSLSKWRNCEHLPP--LGK-------LPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEW 420 (495)
Q Consensus 350 L~l~~~~~~~~~~~--~~~-------l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 420 (495)
|++++|.+. .+|. +.. +++|++|++++|. ++.++..+.. ..+++|+.|++++|. +
T Consensus 462 L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~----------~~l~~L~~L~Ls~N~-l--- 525 (636)
T 4eco_A 462 INLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA----------TTLPYLVGIDLSYNS-F--- 525 (636)
T ss_dssp EECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST----------TTCTTCCEEECCSSC-C---
T ss_pred EECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhh----------ccCCCcCEEECCCCC-C---
Confidence 999998877 4444 222 2389999998765 3333322210 168899999977765 3
Q ss_pred ccccccccccccCcccceeeec------CCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 421 DFGTAIKGEIIIMPRLSSLSID------GCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 421 ~~~~~l~~~~~~~~~L~~L~l~------~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
.+ +|..+..+++|++|+++ +|...+.+|..+..+++|++|++++|+.
T Consensus 526 --~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 526 --SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp --SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred --CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 33 67788899999999995 4566677898999999999999999986
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.6e-29 Score=249.10 Aligned_cols=361 Identities=14% Similarity=0.073 Sum_probs=250.2
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-ccccc
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~ 156 (495)
.+++++++++.+... +..+.. +++|++|++++|.+. ....+..|..+++|++|+++ ++. +..+ |..++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~----l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls-~n~---l~~~~~~~~~ 100 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSR----LQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLD-YNQ---FLQLETGAFN 100 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSS----CTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECT-TCT---TCEECTTTTT
T ss_pred ccCEEEecCCccCcCChhHhcc----CccccEEECcCCccc--ceECcccccccccCCEEeCC-CCc---cCccChhhcc
Confidence 789999999988765 444555 999999999998732 12235668889999999999 666 4444 77788
Q ss_pred CcCCcceEecCCCCcccccchh--hhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCc--c
Q 011015 157 KLIHLKYLNLCGQTEIEKLPET--LCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGEL--I 231 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l--~ 231 (495)
++++|++|++++|.+.+.+|.. +..+++|++|++++|......|.. +..+++|++|++++|.+....|..+..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 9999999999999855545544 788999999999999844444555 7889999999999998777777777665 5
Q ss_pred cccccCeEEecCccCCccCc-----cchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccc
Q 011015 232 SLREVTKFVVGGGYDRACSL-----GSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEED 306 (495)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~-----~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 306 (495)
+|+.|++..+.........+ ..+..+++|+.|++............. ......++|+.|+++.+..........
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-HHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-hccccccceeeEeeccccccccccchh
Confidence 77777777666543111111 112244566666666543221111111 111223678888888775322100000
Q ss_pred h-hHHHhhcC--CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccce
Q 011015 307 E-DERLLEAL--GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVK 382 (495)
Q Consensus 307 ~-~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~ 382 (495)
. .......+ ..+++|+.|++++|.... .++.++..+++|+.|++++|.+.+..+. ++.+++|++|++++|. ++
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 336 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LG 336 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CC
T ss_pred hhccCcccccccccccCceEEEecCccccc--cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cC
Confidence 0 00000001 123689999999998877 6578899999999999999998887665 8899999999999775 33
Q ss_pred EeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCC-cCCCCCCCcc
Q 011015 383 RVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALP-DHLLQKTTLQ 461 (495)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~-~~~~~l~~L~ 461 (495)
.+.... +..+++|+.|++++|. + .+..|..+..+++|++|++++|... .+| ..+..+++|+
T Consensus 337 ~~~~~~-----------~~~l~~L~~L~Ls~N~-l-----~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 337 SIDSRM-----------FENLDKLEVLDLSYNH-I-----RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398 (455)
T ss_dssp EECGGG-----------GTTCTTCCEEECCSSC-C-----CEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC
T ss_pred CcChhH-----------hcCcccCCEEECCCCc-c-----cccChhhccccccccEEECCCCccc-cCCHhHhccCCccc
Confidence 332221 2368999999987775 4 3444667889999999999998755 455 4568899999
Q ss_pred EEEEeCCcch
Q 011015 462 KLWIWGCPIL 471 (495)
Q Consensus 462 ~L~l~~~~~l 471 (495)
+|++++|+..
T Consensus 399 ~L~l~~N~l~ 408 (455)
T 3v47_A 399 KIWLHTNPWD 408 (455)
T ss_dssp EEECCSSCBC
T ss_pred EEEccCCCcc
Confidence 9999999763
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.1e-28 Score=259.07 Aligned_cols=335 Identities=13% Similarity=0.136 Sum_probs=254.2
Q ss_pred CCCcchhhhcccccCCCccEEEEcCCccCcc--------------cccchHHhh--cCCeeeEEEccCccCccccccccc
Q 011015 90 GTSVPIAIWNNVKRMRRLRSLLVEGGDYSWS--------------SKVLPQLFD--KLTCLRALTLETHCCFDFIQKIPK 153 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~l~~ 153 (495)
+..+|..+.+ +++|++|++++|.+... .+.+|+.+. .+++|++|+++ +|.. ...+|.
T Consensus 437 L~~IP~~l~~----L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls-~N~l--~~~iP~ 509 (876)
T 4ecn_A 437 ITFISKAIQR----LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY-NCPN--MTQLPD 509 (876)
T ss_dssp EEEECGGGGG----CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-SCTT--CCSCCG
T ss_pred ccchhHHHhc----CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc-CCCC--CccChH
Confidence 3335655555 99999999999996430 002677666 99999999999 5542 677899
Q ss_pred cccCcCCcceEecCCCC-ccc-ccchhhhccc-------cCcEeecCCCcCCcccch--hhccCCcccEEecCCcccccc
Q 011015 154 NIEKLIHLKYLNLCGQT-EIE-KLPETLCELY-------NLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGTSCLRY 222 (495)
Q Consensus 154 ~~~~l~~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~ 222 (495)
.+.++++|++|++++|. +.+ .+|..++.++ +|++|++++|. +..+|. .++.+++|+.|++++|.+. .
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 99999999999999997 666 7998888777 99999999998 569998 8999999999999999766 7
Q ss_pred ccccccCcccccccCeEEecCccCCccCccchhcccc-cCCceeeccCCCCChhhhHhhccccc--cccceEEEEEecCC
Q 011015 223 LPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNL-LRKCSIRGLGGVSDAGEVRRAELEKQ--KYLVELGLYFDQAG 299 (495)
Q Consensus 223 ~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-L~~l~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~ 299 (495)
+| .++.+++|+.|++..|.+.. ....+..+++ |+.|.+........ +..+... ++|+.|+++.|.++
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~----lp~~l~~l~~~L~~L~Ls~N~L~~l-----p~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEE----IPEDFCAFTDQVEGLGFSHNKLKYI-----PNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSC----CCTTSCEECTTCCEEECCSSCCCSC-----CSCCCTTCSSCEEEEECCSSCTT
T ss_pred ch-hhcCCCcceEEECcCCcccc----chHHHhhccccCCEEECcCCCCCcC-----chhhhccccCCCCEEECcCCcCC
Confidence 88 89999999999999887752 2234666777 88888776543211 1233333 34999999999864
Q ss_pred CCCCccchhHHHhhcCC--CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-C-C-------CCC
Q 011015 300 RRENEEDEDERLLEALG--PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-L-G-------KLP 368 (495)
Q Consensus 300 ~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~-------~l~ 368 (495)
+.. ..++..+. .+++|+.|++++|.+.. +|+..+..+++|+.|++++|.+. .+|. + . +++
T Consensus 658 g~i------p~l~~~l~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 658 SEG------RNISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp TTS------SSCSSCTTTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred Ccc------ccchhhhccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 311 11111222 34589999999999887 84445568999999999999877 4444 2 2 234
Q ss_pred ccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecC-----
Q 011015 369 SLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDG----- 443 (495)
Q Consensus 369 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~----- 443 (495)
+|+.|+|++|. ++.++..+.. ..+++|+.|++++|. ++ + +|..+..+++|++|++++
T Consensus 729 ~L~~L~Ls~N~-L~~lp~~l~~----------~~l~~L~~L~Ls~N~-L~-----~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 729 LLTTIDLRFNK-LTSLSDDFRA----------TTLPYLSNMDVSYNC-FS-----S-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp GCCEEECCSSC-CCCCCGGGST----------TTCTTCCEEECCSSC-CS-----S-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred CccEEECCCCC-CccchHHhhh----------ccCCCcCEEEeCCCC-CC-----c-cchhhhcCCCCCEEECCCCCCcc
Confidence 99999999775 4333332210 168999999987775 43 3 577888999999999977
Q ss_pred -CcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 444 -CPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 444 -c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
|...+.+|..+..+++|++|++++|+.
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC
Confidence 666677899999999999999999987
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.9e-29 Score=260.41 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=102.7
Q ss_pred ceEEEEEEeccCCCcch-hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-ccccc
Q 011015 79 KVLHLMLTVDVGTSVPI-AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~ 156 (495)
.+++++++++.+..++. .+.+ +++|++|++++|. +....|..|..+++|++|+++ ++. +..+ |..|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~Ls~n~---l~~i~~~~~~~l~~L~~L~Ls-~n~---l~~~~p~~~~ 101 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSN----FSELQWLDLSRCE---IETIEDKAWHGLHHLSNLILT-GNP---IQSFSPGSFS 101 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTT----CTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-TCC---CCCCCTTSST
T ss_pred CcCEEECCCCCcCEeChhhccC----CccCcEEeCCCCc---ccccCHHHhhchhhcCEeECC-CCc---ccccChhhcC
Confidence 78888888888876554 4444 8888888888887 445456678888888888888 665 5554 77788
Q ss_pred CcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCc-ccchhhccCCcccEEecCCccccccccccccC
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLR-ELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGE 229 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~ 229 (495)
++++|++|++++|.+.+..+..++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++.
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 88888888888888333333668888888888888887333 46888888888888888888665544444433
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.2e-28 Score=251.43 Aligned_cols=363 Identities=18% Similarity=0.152 Sum_probs=226.7
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-cccc
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~ 156 (495)
.+++++++++.+...+ ..+.. +++|++|++++|. +....|..|..+++|++|+++ ++. +..++ ..++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-~n~---l~~~~~~~~~ 95 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRA----CANLQVLILKSSR---INTIEGDAFYSLGSLEHLDLS-DNH---LSSLSSSWFG 95 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSS----CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECT-TSC---CCSCCHHHHT
T ss_pred CccEEECcCCccCccChhhhhc----CCcccEEECCCCC---cCccChhhccccccCCEEECC-CCc---cCccCHHHhc
Confidence 7888888888877643 34444 8888888888887 444455668888888888888 665 55554 4488
Q ss_pred CcCCcceEecCCCCccc-ccchhhhccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCccccccccccccCccccc
Q 011015 157 KLIHLKYLNLCGQTEIE-KLPETLCELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLR 234 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~ 234 (495)
++++|++|++++|.+.+ ..|..++.+++|++|++++|..++.+| ..+..+++|++|++++|.+....|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 88888888888887333 345667788888888888887556665 4677888888888888876666666666555555
Q ss_pred ccC------------------------eEEecCccCCccCccc----------------------------hhcccccCC
Q 011015 235 EVT------------------------KFVVGGGYDRACSLGS----------------------------LKKLNLLRK 262 (495)
Q Consensus 235 ~L~------------------------l~~~~~~~~~~~~~~~----------------------------l~~l~~L~~ 262 (495)
+|+ +..|............ +..++.|+.
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 544 4444332200000000 001111111
Q ss_pred ceeeccCC------------------------------CCC-------------------------hhhhHhhccccccc
Q 011015 263 CSIRGLGG------------------------------VSD-------------------------AGEVRRAELEKQKY 287 (495)
Q Consensus 263 l~~~~~~~------------------------------~~~-------------------------~~~~~~~~~~~~~~ 287 (495)
+.+..+.. ... ........+..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 11111100 000 00000011134667
Q ss_pred cceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCC--chhhhccccceeeecCccCCCCCCC-C
Q 011015 288 LVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPI--NWIMSLTNLRDLSLSKWRNCEHLPP-L 364 (495)
Q Consensus 288 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-~ 364 (495)
|+.|++++|.++. ........+..+++|+.|++++|.... +++ ..+..+++|+.|++++|.+.. +|. +
T Consensus 336 L~~L~Ls~N~l~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~ 406 (549)
T 2z81_A 336 LEFLDLSENLMVE------EYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHP-MPDSC 406 (549)
T ss_dssp CCEEECCSSCCCH------HHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC
T ss_pred ccEEEccCCcccc------ccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCcc-CChhh
Confidence 7777777776321 001113346778899999999998766 522 347789999999999997774 554 7
Q ss_pred CCCCccceeeccccccceEeCccccCC------CCCCCCCccccCCccceeeecccccccccccccccccccccCcccce
Q 011015 365 GKLPSLEYLVIELMNSVKRVGNEFLGV------ESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSS 438 (495)
Q Consensus 365 ~~l~~L~~L~l~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~ 438 (495)
+.+++|++|++++|. ++.++..+... ...........+++|+.|++++|. ++.+ |. ...+++|++
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~i------p~-~~~l~~L~~ 477 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTL------PD-ASLFPVLLV 477 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSC------CC-GGGCTTCCE
T ss_pred cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcC------CC-cccCccCCE
Confidence 888999999998776 32222111000 000001112367888888887775 5533 33 346899999
Q ss_pred eeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 439 LSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 439 L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
|++++|...+..|..+..+++|++|++++|+.
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 99999876655566688899999999999985
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.7e-28 Score=253.23 Aligned_cols=273 Identities=14% Similarity=0.004 Sum_probs=172.0
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc-cccccc
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK-IPKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~~~ 156 (495)
.++++++++|.+..+ +..+.+ +++|++|++++|. +....|..|..+++|++|+++ ++. +.. .|..++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~----l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-~n~---l~~~~~~~~~ 102 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSR----LINLTFLDLTRCQ---IYWIHEDTFQSQHRLDTLVLT-ANP---LIFMAETALS 102 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTT----CTTCSEEECTTCC---CCEECTTTTTTCTTCCEEECT-TCC---CSEECTTTTS
T ss_pred cCcEEEccCCccCcCChhHhcc----CccceEEECCCCc---cceeChhhccCccccCeeeCC-CCc---ccccChhhhc
Confidence 789999999998875 345555 9999999999998 445567788999999999999 665 444 477789
Q ss_pred CcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCccc-chhhccCCcccEEecCCccccccccccccCccccc-
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLREL-PRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLR- 234 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~- 234 (495)
++++|++|++++|.+.+..|..++.+++|++|++++|. +..+ ++.+..+++|++|++++|.+....|..++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 99999999999998443335678899999999999998 5443 23444589999999999977666667778888888
Q ss_pred -ccCeEEecCccCCccCccc----------------------------------------------hhccc--ccCCcee
Q 011015 235 -EVTKFVVGGGYDRACSLGS----------------------------------------------LKKLN--LLRKCSI 265 (495)
Q Consensus 235 -~L~l~~~~~~~~~~~~~~~----------------------------------------------l~~l~--~L~~l~~ 265 (495)
.|++..|.........+.. +..+. .++.+.+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 5666555443311111100 00000 1222222
Q ss_pred eccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhcc
Q 011015 266 RGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLT 345 (495)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 345 (495)
...... ......+..+++|+.|++++|.++ .++..+..+++|++|++++|.... +++..+..++
T Consensus 262 ~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~----------~lp~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~ 325 (606)
T 3t6q_A 262 QKHYFF----NISSNTFHCFSGLQELDLTATHLS----------ELPSGLVGLSTLKKLVLSANKFEN--LCQISASNFP 325 (606)
T ss_dssp TTCCCS----SCCTTTTTTCTTCSEEECTTSCCS----------CCCSSCCSCTTCCEEECTTCCCSB--GGGGCGGGCT
T ss_pred ecCccC----ccCHHHhccccCCCEEeccCCccC----------CCChhhcccccCCEEECccCCcCc--CchhhhhccC
Confidence 211110 011123455667777777776642 234445556666666666665554 4344555566
Q ss_pred ccceeeecCccCCCCCCC--CCCCCccceeeccccc
Q 011015 346 NLRDLSLSKWRNCEHLPP--LGKLPSLEYLVIELMN 379 (495)
Q Consensus 346 ~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 379 (495)
+|+.|++++|.+...++. ++.+++|++|+++++.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 666666666655544333 4555555555555443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.3e-28 Score=252.34 Aligned_cols=165 Identities=15% Similarity=0.053 Sum_probs=90.3
Q ss_pred cccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCC
Q 011015 282 LEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHL 361 (495)
Q Consensus 282 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 361 (495)
+..+++|+.|+++.|.++. ....+..+..+++|+.|++++|.... +++..+..+++|+.|++++|.+.+..
T Consensus 346 ~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIET-------SDCCNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp TTTCTTCCEEECCSSCCCE-------EEESTTTTTTCTTCCEEECCSCSCEE--ECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred hhccCcCCEEECCCCcccc-------ccCcchhcccCCCCCEEECCCCcCCc--CCHHHhcCCccCCeEECCCCcCCCcc
Confidence 3445555555555554321 00113345556667777776666554 44556666667777777766665543
Q ss_pred CC--CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCccccee
Q 011015 362 PP--LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSL 439 (495)
Q Consensus 362 ~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L 439 (495)
+. +..+++|++|++++|.. .+..+ ..+..+++|+.|++++|. +....+ ..+..+..+++|++|
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l--------~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLL--------DISSE----QLFDGLPALQHLNLQGNH-FPKGNI--QKTNSLQTLGRLEIL 481 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCC--------BTTCT----TTTTTCTTCCEEECTTCB-CGGGEE--CSSCGGGGCTTCCEE
T ss_pred cchhhhCcccCCEEECCCCcc--------CCcCH----HHHhCCCCCCEEECCCCC-CCcccc--ccchhhccCCCccEE
Confidence 32 56666777777765431 11110 112256777777766665 332111 111345566677777
Q ss_pred eecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 440 SIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 440 ~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
++++|...+..|..+..+++|++|++++|+.
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 7777665555556666677777777777654
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=251.39 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=96.5
Q ss_pred ceEEEEEEeccCCCcch-hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-ccccc
Q 011015 79 KVLHLMLTVDVGTSVPI-AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~ 156 (495)
.+++++++++.+..++. .+.. +++|++|++++|. +....+..|..+++|++|+++ ++. +..+ +..|.
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~ 97 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFS----FPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-GNP---IQSLALGAFS 97 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTT----CSSCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-TCC---CCEECTTTTT
T ss_pred cccEEEccCCccCccChhHhhC----CCCceEEECCCCc---CCccCcccccCchhCCEEeCc-CCc---CCccCHhhhc
Confidence 67788888887776443 3444 8888888888887 334445667778888888888 555 4444 45677
Q ss_pred CcCCcceEecCCCCcccccch-hhhccccCcEeecCCCcCCc-ccchhhccCCcccEEecCCccccccccccccCcccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLR-ELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISL 233 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L 233 (495)
++++|++|++++|. +..++. .++.+++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred Cccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 78888888888887 555543 57777888888888876333 367777778888888887776544444444444444
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.4e-28 Score=244.20 Aligned_cols=342 Identities=17% Similarity=0.120 Sum_probs=215.1
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccC
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 157 (495)
+++++++++|.+...+ ..+.. +++|++|++++|. +....|..|..+++|++|+++ ++. +..+|.. .
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~----l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-~N~---l~~lp~~--~ 88 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILS----LSKLRILIISHNR---IQYLDISVFKFNQELEYLDLS-HNK---LVKISCH--P 88 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTT----CTTCCEEECCSSC---CCEEEGGGGTTCTTCCEEECC-SSC---CCEEECC--C
T ss_pred cccEEECCCCcccccChhhccc----cccccEEecCCCc---cCCcChHHhhcccCCCEEecC-CCc---eeecCcc--c
Confidence 8899999999988765 45665 9999999999998 455567789999999999999 777 6677765 8
Q ss_pred cCCcceEecCCCCccc-ccchhhhccccCcEeecCCCcCCcccchhhccCCcc--cEEecCCccc--cccccccccC---
Q 011015 158 LIHLKYLNLCGQTEIE-KLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKL--MYLYNEGTSC--LRYLPVGIGE--- 229 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L--~~L~L~~~~~--~~~~~~~i~~--- 229 (495)
+++|++|++++|.+.+ .+|..++.+++|++|++++|. +.. ..+..+++| +.|++++|.+ ....|..++.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc
Confidence 9999999999999544 467889999999999999987 433 356667777 8888888765 3444443333
Q ss_pred -----------------------cccccccCeEEec--------------------------------------------
Q 011015 230 -----------------------LISLREVTKFVVG-------------------------------------------- 242 (495)
Q Consensus 230 -----------------------l~~L~~L~l~~~~-------------------------------------------- 242 (495)
+++|+.+++..|.
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh
Confidence 4455555554442
Q ss_pred -------------CccCCccCccc--hhcccccCCceeeccCCCCChhhhHhhc---------------------ccccc
Q 011015 243 -------------GGYDRACSLGS--LKKLNLLRKCSIRGLGGVSDAGEVRRAE---------------------LEKQK 286 (495)
Q Consensus 243 -------------~~~~~~~~~~~--l~~l~~L~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~ 286 (495)
.....+..+.. ...++.|+.+.+..... .......... ...++
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 11100100000 02223333322222111 0000000000 13445
Q ss_pred ccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCC--CchhhhccccceeeecCccCCCCCCC-
Q 011015 287 YLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVP--INWIMSLTNLRDLSLSKWRNCEHLPP- 363 (495)
Q Consensus 287 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~- 363 (495)
+|+.|++++|.++ ...+..+..+++|+.|++++|.+.. ++ |.++..+++|+.|++++|.+.+.+|.
T Consensus 325 ~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 325 PFLHLDFSNNLLT---------DTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCCEEECCSSCCC---------TTTTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred cccEEEeECCccC---------hhhhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 5555555555432 1233445556666666666666553 21 23455666677777766666653442
Q ss_pred -CCCCCccceeeccccccceEeCccccCCCCCCCCCccccC-CccceeeecccccccccccccccccccccCcccceeee
Q 011015 364 -LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAF-PKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSI 441 (495)
Q Consensus 364 -~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l 441 (495)
+..+++|++|++++|. +.+..+ ..+ ++|+.|++++|. ++ .+|..+..+++|++|++
T Consensus 394 ~~~~l~~L~~L~Ls~N~--------l~~~~~-------~~l~~~L~~L~Ls~N~-l~------~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNI--------LTDTIF-------RCLPPRIKVLDLHSNK-IK------SIPKQVVKLEALQELNV 451 (520)
T ss_dssp SCCCCTTCCEEECCSSC--------CCGGGG-------GSCCTTCCEEECCSSC-CC------CCCGGGGGCTTCCEEEC
T ss_pred hhccCccCCEEECcCCC--------CCcchh-------hhhcccCCEEECCCCc-cc------ccchhhhcCCCCCEEEC
Confidence 5566667777776543 111111 122 578888877765 43 45666778999999999
Q ss_pred cCCcCccCCCcC-CCCCCCccEEEEeCCcch
Q 011015 442 DGCPKLKALPDH-LLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 442 ~~c~~~~~l~~~-~~~l~~L~~L~l~~~~~l 471 (495)
++|.. ..+|.. +..+++|++|++++|+..
T Consensus 452 ~~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 452 ASNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcC-CccCHHHhccCCcccEEECcCCCCc
Confidence 99864 478876 788999999999999863
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=254.04 Aligned_cols=368 Identities=16% Similarity=0.059 Sum_probs=230.2
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-ccccc
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~ 156 (495)
.+++|++++|.+..+ +..+.. +++|++|++++|.. .....|..|..+++|++|+++ ++. +..+ |..|.
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~----l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls-~N~---l~~~~p~~~~ 94 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPF----LEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLG-SSK---IYFLHPDAFQ 94 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSS----CCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECT-TCC---CCEECTTSSC
T ss_pred CcCEEECCCCcCCccChhHCcc----cccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECC-CCc---CcccCHhHcc
Confidence 899999999998864 445555 99999999999963 333337779999999999999 666 5544 78899
Q ss_pred CcCCcceEecCCCCcccccchh--hhccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCccccccccccccCc--c
Q 011015 157 KLIHLKYLNLCGQTEIEKLPET--LCELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLRYLPVGIGEL--I 231 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l--~ 231 (495)
++++|++|++++|.+.+.+|.. ++.+++|++|++++|......+ ..++++++|++|++++|.+....+..+..+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999965556654 8899999999999998433333 568999999999999997766666666655 6
Q ss_pred cccccCeEEecCccCCccCccchhc---ccccCCceeeccC---------------------------------------
Q 011015 232 SLREVTKFVVGGGYDRACSLGSLKK---LNLLRKCSIRGLG--------------------------------------- 269 (495)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~~~~l~~---l~~L~~l~~~~~~--------------------------------------- 269 (495)
+|+.|++..|.........+..+.. ...|+.+++....
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 6666666665544311111111100 0012222222110
Q ss_pred --------------------CCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeee
Q 011015 270 --------------------GVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDY 329 (495)
Q Consensus 270 --------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 329 (495)
... ........+..+++|+.|+++.|.++. ..+..+..+++|+.|++++|
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINK---------IADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCE---------ECTTTTTTCSSCCEEEEESC
T ss_pred CChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCC---------CChHHhcCCCCCCEEECCCC
Confidence 000 000112334556777777777776431 12345666778888888888
Q ss_pred cCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeC------------ccccCCCCC--
Q 011015 330 RGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVG------------NEFLGVESD-- 394 (495)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~------------~~~~~~~~~-- 394 (495)
.... +++..+..+++|+.|++++|.+....+. +..+++|++|+++++. ++.+. +.+......
T Consensus 325 ~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 325 LLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp CCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCc--cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccCCCCcchhccCCCCccccccccc
Confidence 7765 5466777888888888888876554443 7778888888887664 11110 110000000
Q ss_pred ---------------CCCCccccCCccceeeeccccccccc-------------------------ccccccccccccCc
Q 011015 395 ---------------TDGSSVIAFPKLKLLDFYIMKELEEW-------------------------DFGTAIKGEIIIMP 434 (495)
Q Consensus 395 ---------------~~~~~~~~~~~L~~L~l~~~~~l~~~-------------------------~~~~~l~~~~~~~~ 434 (495)
........+++|+.|++++|. ++.. .-.+..+..+..++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCcc
Confidence 000001145566666665554 3211 11122334566677
Q ss_pred ccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 435 RLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 435 ~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+|++|++++|......|..+..+++|++|++++|..
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 888888887765544455567788888888888754
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.4e-27 Score=228.83 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=183.2
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+++|++|++.++.+.. ++. +..+++|++|+++ ++. +..++. +..+++|++|++++|. +..+| .+..++
T Consensus 43 l~~L~~L~l~~~~i~~----~~~-~~~~~~L~~L~l~-~n~---i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----IQG-IEYLTNLEYLNLN-GNQ---ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCCCC----CTT-GGGCTTCCEEECC-SSC---CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCT
T ss_pred cccccEEEEeCCcccc----chh-hhhcCCccEEEcc-CCc---cccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCC
Confidence 5555555555554321 222 4455555555555 443 333433 4555555555555554 33343 245555
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKC 263 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l 263 (495)
+|++|++++|. +..++. +..+++|+.|++++|.....++ .+..+++|+.|++..+.... +..+..+++|+.+
T Consensus 111 ~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~l~~L~~L 182 (347)
T 4fmz_A 111 NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-----VTPIANLTDLYSL 182 (347)
T ss_dssp TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-----CGGGGGCTTCSEE
T ss_pred cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-----chhhccCCCCCEE
Confidence 55555555554 444433 4555555555555553333222 24555555555555444332 1114444555555
Q ss_pred eeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhh
Q 011015 264 SIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMS 343 (495)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 343 (495)
++........ ..+..+++|+.++++.|.+.. ...+..+++|++|++++|.... +++ +..
T Consensus 183 ~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~L~~L~l~~n~l~~--~~~--~~~ 241 (347)
T 4fmz_A 183 SLNYNQIEDI------SPLASLTSLHYFTAYVNQITD-----------ITPVANMTRLNSLKIGNNKITD--LSP--LAN 241 (347)
T ss_dssp ECTTSCCCCC------GGGGGCTTCCEEECCSSCCCC-----------CGGGGGCTTCCEEECCSSCCCC--CGG--GTT
T ss_pred EccCCccccc------ccccCCCccceeecccCCCCC-----------CchhhcCCcCCEEEccCCccCC--Ccc--hhc
Confidence 5544322211 115567788888888887532 1115567899999999998877 523 788
Q ss_pred ccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccc
Q 011015 344 LTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFG 423 (495)
Q Consensus 344 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 423 (495)
+++|+.|++++|.+.. ++.+..+++|++|++++|. ++.+. ....+++|+.|++++|. ++
T Consensus 242 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~-l~----- 300 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQ-LG----- 300 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSC-CC-----
T ss_pred CCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcCCc-CC-----
Confidence 9999999999997665 4568889999999999774 32221 12368999999988876 43
Q ss_pred cccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 424 TAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 424 ~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+..|..+..+++|++|++++|+... +++ +..+++|++|++++|+.
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSSCC--
T ss_pred CcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehhhhcc
Confidence 3344567789999999999998554 444 77899999999999975
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.4e-28 Score=252.07 Aligned_cols=111 Identities=25% Similarity=0.299 Sum_probs=81.2
Q ss_pred CCCCCCCCceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccc
Q 011015 71 GMSSFEQKKVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQ 149 (495)
Q Consensus 71 ~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 149 (495)
.+.... .++++++++|.+..++ ..+.+ +++|++|++++|. +....|..|..+++|++|+++ ++. +.
T Consensus 51 ~~~~l~--~L~~L~Ls~n~l~~i~~~~~~~----l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~-~n~---l~ 117 (606)
T 3vq2_A 51 SFSNFS--ELQWLDLSRCEIETIEDKAWHG----LHHLSNLILTGNP---IQSFSPGSFSGLTSLENLVAV-ETK---LA 117 (606)
T ss_dssp TTTTCT--TCCEEECTTCCCCEECTTTTTT----CTTCCEEECTTCC---CCCCCTTSSTTCTTCCEEECT-TSC---CC
T ss_pred hccCCc--cCcEEeCCCCcccccCHHHhhc----hhhcCEeECCCCc---ccccChhhcCCcccCCEEEcc-CCc---cc
Confidence 444455 7888888888877653 34444 8888888888887 444456778888888888888 666 55
Q ss_pred ccc-ccccCcCCcceEecCCCCccc-ccchhhhccccCcEeecCCCc
Q 011015 150 KIP-KNIEKLIHLKYLNLCGQTEIE-KLPETLCELYNLECLNVSGCW 194 (495)
Q Consensus 150 ~l~-~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~ 194 (495)
.++ ..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 543 567888888888888887443 567778888888888888876
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5.8e-28 Score=252.61 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=125.6
Q ss_pred ceEEEEEEeccCCCcch-hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccc-ccc
Q 011015 79 KVLHLMLTVDVGTSVPI-AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPK-NIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~ 156 (495)
++++++++++.+..++. .+.. +++|++|++++|. +....|..|..+++|++|+++ ++. +..+|. .|.
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-~n~---l~~l~~~~~~ 94 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTR----YSQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQ-HNE---LSQLSDKTFA 94 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGG----GTTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECC-SSC---CCCCCTTTTT
T ss_pred CCcEEECCCCCCCCcCHHHHhC----CCcCcEEECCCCc---cCccCHHHHhcccCcCEEECC-CCc---cCccChhhhc
Confidence 89999999999887664 3555 9999999999998 445567889999999999999 666 667765 589
Q ss_pred CcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCcccccccccccc--Ccccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIG--ELISL 233 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~--~l~~L 233 (495)
++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|.+....+..+. .+++|
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 99999999999999 45554 6789999999999999985555666788999999999999976555554443 55889
Q ss_pred cccCeEEecCcc
Q 011015 234 REVTKFVVGGGY 245 (495)
Q Consensus 234 ~~L~l~~~~~~~ 245 (495)
+.|++..|....
T Consensus 174 ~~L~L~~n~l~~ 185 (680)
T 1ziw_A 174 KKLELSSNQIKE 185 (680)
T ss_dssp SEEECTTCCCCC
T ss_pred cEEECCCCcccc
Confidence 999888776653
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=242.35 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=120.4
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcC
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLI 159 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~ 159 (495)
++++++++.++.+|..+ .++|++|++++|. +....|..|..+++|++|+++ ++. +..+ |..+.+++
T Consensus 3 ~~l~ls~n~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls-~n~---l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL------SQKTTILNISQNY---ISELWTSDILSLSKLRILIIS-HNR---IQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSC------CTTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECC-SSC---CCEEEGGGGTTCT
T ss_pred ceEecCCCCcccccccc------cccccEEECCCCc---ccccChhhccccccccEEecC-CCc---cCCcChHHhhccc
Confidence 56888888888777544 3799999999998 445566789999999999999 766 5555 77899999
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCc-ccchhhccCCcccEEecCCccccccccccccCcccc--ccc
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLR-ELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISL--REV 236 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L--~~L 236 (495)
+|++|++++|. +..+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.+.. ..+..+++| +.|
T Consensus 70 ~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 70 ELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp TCCEEECCSSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred CCCEEecCCCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 99999999999 7788876 89999999999998444 467899999999999999997654 346677777 999
Q ss_pred CeEEecC
Q 011015 237 TKFVVGG 243 (495)
Q Consensus 237 ~l~~~~~ 243 (495)
++..|..
T Consensus 144 ~l~~n~l 150 (520)
T 2z7x_B 144 LLVLGET 150 (520)
T ss_dssp EEEECTT
T ss_pred Eeecccc
Confidence 9999877
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-27 Score=228.38 Aligned_cols=308 Identities=17% Similarity=0.097 Sum_probs=217.6
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
+++++.|++.++. +....+..|..+++|++|+++ ++. +..++ ..+..+++|++|++++|.+.+..|..++.+
T Consensus 44 l~~l~~l~l~~~~---l~~l~~~~~~~l~~L~~L~L~-~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-DLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GCCCSEEEEESCE---ESEECTHHHHHCCCCSEEECT-TSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCceEEEecCCc---hhhCChhHhcccccCcEEECC-CCc---ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 6777788887776 333334446777778888887 555 54543 467777788888888877333334556777
Q ss_pred ccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccC
Q 011015 183 YNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLR 261 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 261 (495)
++|++|++++|. +..+|.. ++.+++|++|++++|.+....|..+..+++|+.|++..|.... . .+..++.|+
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~---~~~~l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLF 189 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---C---CGGGCTTCS
T ss_pred CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---c---ccccccccc
Confidence 788888888776 5666655 4677788888888776655555667777778887777766543 1 234455555
Q ss_pred CceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchh
Q 011015 262 KCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWI 341 (495)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 341 (495)
.+.+..... ..+...++|+.|++++|.+.. .+. ..+++|+.|++++|.... ..++
T Consensus 190 ~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~----------~~~--~~~~~L~~L~l~~n~l~~----~~~l 244 (390)
T 3o6n_A 190 HANVSYNLL---------STLAIPIAVEELDASHNSINV----------VRG--PVNVELTILKLQHNNLTD----TAWL 244 (390)
T ss_dssp EEECCSSCC---------SEEECCSSCSEEECCSSCCCE----------EEC--CCCSSCCEEECCSSCCCC----CGGG
T ss_pred eeecccccc---------cccCCCCcceEEECCCCeeee----------ccc--cccccccEEECCCCCCcc----cHHH
Confidence 555543211 123344689999999887532 111 235789999999998877 4678
Q ss_pred hhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccc
Q 011015 342 MSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEW 420 (495)
Q Consensus 342 ~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 420 (495)
..+++|+.|++++|.+.+..|. +..+++|++|+++++. ++.++..+ ..+++|+.|++++|. ++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L~~L~L~~n~-l~~- 309 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTLKVLDLSHNH-LLH- 309 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTCCEEECCSSC-CCC-
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------------CCCCCCCEEECCCCc-cee-
Confidence 8999999999999988876665 8899999999999765 33332211 268999999988886 543
Q ss_pred ccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcchhH
Q 011015 421 DFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPILEE 473 (495)
Q Consensus 421 ~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 473 (495)
+|..+..+++|++|++++|.. ..++ +..+++|++|++++|+.-.+
T Consensus 310 -----~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 310 -----VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -----CGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred -----cCccccccCcCCEEECCCCcc-ceeC--chhhccCCEEEcCCCCccch
Confidence 445677899999999999875 4454 67789999999999987544
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4e-27 Score=240.43 Aligned_cols=341 Identities=16% Similarity=0.089 Sum_probs=198.9
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccC
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~ 157 (495)
.++++++++|.+..++ ..+.. +++|++|++++|. +....|..|..+++|++|+++ ++. +..+|.. .
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~----l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls-~N~---l~~lp~~--~ 119 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISF----LSELRVLRLSHNR---IRSLDFHVFLFNQDLEYLDVS-HNR---LQNISCC--P 119 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTT----CTTCCEEECCSCC---CCEECTTTTTTCTTCCEEECT-TSC---CCEECSC--C
T ss_pred CcCEEECCCCCccccChhhhcc----CCCccEEECCCCC---CCcCCHHHhCCCCCCCEEECC-CCc---CCccCcc--c
Confidence 6777777777776654 34444 7777777777776 334445667777777777777 555 5566654 6
Q ss_pred cCCcceEecCCCCccccc--chhhhccccCcEeecCCCcCCcccchhhccCCcc--cEEecCCccc--cccccccccC--
Q 011015 158 LIHLKYLNLCGQTEIEKL--PETLCELYNLECLNVSGCWNLRELPRGIGKLRKL--MYLYNEGTSC--LRYLPVGIGE-- 229 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L--~~L~L~~~~~--~~~~~~~i~~-- 229 (495)
+++|++|++++|. +..+ |..++++++|++|++++|. +.. ..+..+++| +.|++++|.+ ....|..+..
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 7777777777777 4433 4567777777777777776 322 233444444 7777766654 3333332222
Q ss_pred ------------------------cc------------------------------------------------------
Q 011015 230 ------------------------LI------------------------------------------------------ 231 (495)
Q Consensus 230 ------------------------l~------------------------------------------------------ 231 (495)
++
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 11
Q ss_pred -cccccCeEEecCccCCccCccc--hhcccccCCceeeccCCCCChhhhHhh---------------------ccccccc
Q 011015 232 -SLREVTKFVVGGGYDRACSLGS--LKKLNLLRKCSIRGLGGVSDAGEVRRA---------------------ELEKQKY 287 (495)
Q Consensus 232 -~L~~L~l~~~~~~~~~~~~~~~--l~~l~~L~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 287 (495)
+|++|++..+......+..+.. ...++.|+.+.+..... ......... ....+++
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 354 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCC
Confidence 2333333333322111111100 01222222211111110 000000000 0144566
Q ss_pred cceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCC--CchhhhccccceeeecCccCCCCCCC--
Q 011015 288 LVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVP--INWIMSLTNLRDLSLSKWRNCEHLPP-- 363 (495)
Q Consensus 288 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-- 363 (495)
|+.|++++|.++ ...+..+..+++|+.|++++|.... ++ |..+..+++|+.|++++|.+.+.+|.
T Consensus 355 L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 355 FTFLNFTQNVFT---------DSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCEEECCSSCCC---------TTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred ceEEECCCCccc---------cchhhhhcccCCCCEEECCCCCcCC--cccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 777777666532 2234556667778888888777665 42 23456777888888888877764554
Q ss_pred CCCCCccceeeccccccceEeCccccCCCCCCCCCccccC-CccceeeecccccccccccccccccccccCcccceeeec
Q 011015 364 LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAF-PKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSID 442 (495)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~ 442 (495)
+..+++|++|++++|. +.+..+ ..+ ++|+.|++++|. ++ .+|..+..+++|++|+++
T Consensus 424 ~~~l~~L~~L~l~~n~--------l~~~~~-------~~l~~~L~~L~L~~N~-l~------~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 424 CAWAESILVLNLSSNM--------LTGSVF-------RCLPPKVKVLDLHNNR-IM------SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CCCCTTCCEEECCSSC--------CCGGGG-------SSCCTTCSEEECCSSC-CC------CCCTTTTSSCCCSEEECC
T ss_pred hcCcccCCEEECCCCC--------CCcchh-------hhhcCcCCEEECCCCc-Cc------ccChhhcCCCCCCEEECC
Confidence 6677888888887554 111111 123 689999987775 54 455666789999999999
Q ss_pred CCcCccCCCcC-CCCCCCccEEEEeCCcch
Q 011015 443 GCPKLKALPDH-LLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 443 ~c~~~~~l~~~-~~~l~~L~~L~l~~~~~l 471 (495)
+|.. ..+|.. +..+++|++|++++|+..
T Consensus 482 ~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 482 SNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SSCC-CCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCC-CCCCHHHHhcCCCCCEEEecCCCcC
Confidence 9874 478876 888999999999999863
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=235.92 Aligned_cols=265 Identities=19% Similarity=0.100 Sum_probs=164.8
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCC
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIH 160 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~ 160 (495)
.++.+++.+..+|..+ .+.++.|++++|. +....+..|..+++|++|+++ ++. +..+ |..|.++++
T Consensus 15 ~v~c~~~~l~~ip~~~------~~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-~n~---i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI------PTETRLLDLGKNR---IKTLNQDEFASFPHLEELELN-ENI---VSAVEPGAFNNLFN 81 (477)
T ss_dssp EEECCSCCCSSCCSCC------CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECT-TSC---CCEECTTTTTTCTT
T ss_pred EEEeCCCCcCcCCCCC------CCCCcEEECCCCc---cceECHhHccCCCCCCEEECC-CCc---cCEeChhhhhCCcc
Confidence 4555566666666544 3578899999988 444446678889999999998 665 5554 677888999
Q ss_pred cceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 161 LKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 161 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
|++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|++|++.
T Consensus 82 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 82 LRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE
T ss_pred CCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC
Confidence 9999999988 666664 46788999999999988444556678889999999999887766667778888888888888
Q ss_pred EecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCC
Q 011015 240 VVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPP 319 (495)
Q Consensus 240 ~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (495)
.|.... .....+..+++|+.|.+....... .....+..+++|+.|+++.|... ..++.......
T Consensus 161 ~n~l~~---~~~~~l~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~~~ 224 (477)
T 2id5_A 161 KCNLTS---IPTEALSHLHGLIVLRLRHLNINA----IRDYSFKRLYRLKVLEISHWPYL---------DTMTPNCLYGL 224 (477)
T ss_dssp SCCCSS---CCHHHHTTCTTCCEEEEESCCCCE----ECTTCSCSCTTCCEEEEECCTTC---------CEECTTTTTTC
T ss_pred CCcCcc---cChhHhcccCCCcEEeCCCCcCcE----eChhhcccCcccceeeCCCCccc---------cccCcccccCc
Confidence 776542 112224444555555444322111 11123444555566665554421 11122222233
Q ss_pred CcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeecccc
Q 011015 320 NLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELM 378 (495)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 378 (495)
+|++|++++|.+.. +|+..+..+++|+.|++++|.+.+..+. +..+++|++|+++++
T Consensus 225 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 225 NLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCSEEEEESSCCCS--CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred cccEEECcCCcccc--cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 55555555555544 4333455555555555555554443332 455555555555544
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.3e-26 Score=230.94 Aligned_cols=321 Identities=20% Similarity=0.213 Sum_probs=168.5
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++.+.+.++.+..++ .+.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++. +..+
T Consensus 47 ~l~~L~l~~~~i~~l~-~~~~----l~~L~~L~Ls~n~l~---~-~~~-~~~l~~L~~L~l~-~n~---l~~~~~-~~~l 111 (466)
T 1o6v_A 47 QVTTLQADRLGIKSID-GVEY----LNNLTQINFSNNQLT---D-ITP-LKNLTKLVDILMN-NNQ---IADITP-LANL 111 (466)
T ss_dssp TCCEEECCSSCCCCCT-TGGG----CTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECC-SSC---CCCCGG-GTTC
T ss_pred cccEEecCCCCCccCc-chhh----hcCCCEEECCCCccC---C-chh-hhccccCCEEECC-CCc---cccChh-hcCC
Confidence 5566666666655443 2333 666666666666632 2 222 5666666666666 544 444443 6666
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEec---------------------CCc
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYN---------------------EGT 217 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L---------------------~~~ 217 (495)
++|++|++++|. +..++. +..+++|++|++++|. +..++ .++.+++|+.|++ ++|
T Consensus 112 ~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 112 TNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence 666666666666 444443 5666666666666665 44443 2445555555554 444
Q ss_pred cccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEec
Q 011015 218 SCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQ 297 (495)
Q Consensus 218 ~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 297 (495)
.+.. + ..+..+++|+.|++..|.... ...+..+++|+.|.+........ ..+..+++|+.|++++|.
T Consensus 188 ~l~~-~-~~l~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 188 KVSD-I-SVLAKLTNLESLIATNNQISD-----ITPLGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CCCC-C-GGGGGCTTCSEEECCSSCCCC-----CGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSC
T ss_pred cCCC-C-hhhccCCCCCEEEecCCcccc-----cccccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCc
Confidence 3211 1 123444444444444443322 11133344444444433222111 123444555555555554
Q ss_pred CCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccc
Q 011015 298 AGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIEL 377 (495)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 377 (495)
++. ...+..+++|+.|++++|.... +++ +..+++|+.|++++|.+.+. +.++.+++|++|++++
T Consensus 255 l~~-----------~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 255 ISN-----------LAPLSGLTKLTELKLGANQISN--ISP--LAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYF 318 (466)
T ss_dssp CCC-----------CGGGTTCTTCSEEECCSSCCCC--CGG--GTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCS
T ss_pred ccc-----------chhhhcCCCCCEEECCCCccCc--ccc--ccCCCccCeEEcCCCcccCc-hhhcCCCCCCEEECcC
Confidence 321 0114445566666666665554 312 45566666666666654432 2255566666666664
Q ss_pred cccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCC
Q 011015 378 MNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQK 457 (495)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l 457 (495)
|. + .+..+ ...+++|+.|++++|. ++.. ..+..+++|++|++++|...+..| +..+
T Consensus 319 n~-l-------~~~~~------~~~l~~L~~L~l~~n~-l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 374 (466)
T 1o6v_A 319 NN-I-------SDISP------VSSLTKLQRLFFYNNK-VSDV-------SSLANLTNINWLSAGHNQISDLTP--LANL 374 (466)
T ss_dssp SC-C-------SCCGG------GGGCTTCCEEECCSSC-CCCC-------GGGTTCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred Cc-C-------CCchh------hccCccCCEeECCCCc-cCCc-------hhhccCCCCCEEeCCCCccCccch--hhcC
Confidence 43 1 11111 2256777777766664 4443 245667788888888776544443 6677
Q ss_pred CCccEEEEeCCcch
Q 011015 458 TTLQKLWIWGCPIL 471 (495)
Q Consensus 458 ~~L~~L~l~~~~~l 471 (495)
++|++|++++|+..
T Consensus 375 ~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 375 TRITQLGLNDQAWT 388 (466)
T ss_dssp TTCCEEECCCEEEE
T ss_pred CCCCEEeccCCccc
Confidence 88888888887654
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.7e-26 Score=230.02 Aligned_cols=301 Identities=21% Similarity=0.246 Sum_probs=226.1
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.+++++++++.+...+. +.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++. +..+
T Consensus 69 ~L~~L~Ls~n~l~~~~~-~~~----l~~L~~L~l~~n~l~---~-~~~-~~~l~~L~~L~L~-~n~---l~~~~~-~~~l 133 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP-LKN----LTKLVDILMNNNQIA---D-ITP-LANLTNLTGLTLF-NNQ---ITDIDP-LKNL 133 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTT----CTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECC-SSC---CCCCGG-GTTC
T ss_pred CCCEEECCCCccCCchh-hhc----cccCCEEECCCCccc---c-Chh-hcCCCCCCEEECC-CCC---CCCChH-HcCC
Confidence 78888888888876654 444 888888888888743 3 233 7778888888888 665 555543 7777
Q ss_pred CCcceEecCCCCcccccch--------------------hhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCcc
Q 011015 159 IHLKYLNLCGQTEIEKLPE--------------------TLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTS 218 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~--------------------~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 218 (495)
++|++|++++|. +..++. .+..+++|++|++++|. +..++ .+..+++|++|++++|.
T Consensus 134 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 134 TNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ 210 (466)
T ss_dssp TTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred CCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc
Confidence 888888887776 433332 25677889999999998 66654 58899999999999997
Q ss_pred ccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecC
Q 011015 219 CLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQA 298 (495)
Q Consensus 219 ~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 298 (495)
+....| ++.+++|++|++..|.... +..+..+++|+.|++......... .+..+++|+.|++++|.+
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQI 277 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCC
T ss_pred cccccc--ccccCCCCEEECCCCCccc-----chhhhcCCCCCEEECCCCccccch------hhhcCCCCCEEECCCCcc
Confidence 655444 7789999999999887653 356778888888888776443321 267789999999999986
Q ss_pred CCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeecccc
Q 011015 299 GRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELM 378 (495)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (495)
+. ...+..+++|+.|++++|.... +++ +..+++|+.|++++|.+.+..| ++.+++|++|++++|
T Consensus 278 ~~-----------~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 278 SN-----------ISPLAGLTALTNLELNENQLED--ISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CC-----------CGGGTTCTTCSEEECCSSCCSC--CGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred Cc-----------cccccCCCccCeEEcCCCcccC--chh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 43 1126678999999999998877 523 7899999999999998776554 788999999999977
Q ss_pred ccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCcc
Q 011015 379 NSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLK 448 (495)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 448 (495)
. ++.+ . .+..+++|+.|++++|. ++. ..| +..+++|++|++++|+...
T Consensus 342 ~-l~~~----~---------~l~~l~~L~~L~l~~n~-l~~-----~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 K-VSDV----S---------SLANLTNINWLSAGHNQ-ISD-----LTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp C-CCCC----G---------GGTTCTTCCEEECCSSC-CCB-----CGG--GTTCTTCCEEECCCEEEEC
T ss_pred c-cCCc----h---------hhccCCCCCEEeCCCCc-cCc-----cch--hhcCCCCCEEeccCCcccC
Confidence 4 3222 1 13378999999988876 433 333 6789999999999987554
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.9e-27 Score=236.60 Aligned_cols=341 Identities=14% Similarity=0.094 Sum_probs=242.7
Q ss_pred CCCCCCCCCCceEEEEEEeccCCC-c-chhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcc
Q 011015 69 PGGMSSFEQKKVLHLMLTVDVGTS-V-PIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFD 146 (495)
Q Consensus 69 ~~~~~~~~~~~~~~l~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 146 (495)
+..+.... +++.+++.++.+.. + +..+.. +++|++|++++|. +....|..|..+++|++|+++ ++.
T Consensus 47 ~~~~~~l~--~L~~L~L~~n~~~~~i~~~~~~~----l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~-~n~-- 114 (455)
T 3v47_A 47 ETSFSRLQ--DLQFLKVEQQTPGLVIRNNTFRG----LSSLIILKLDYNQ---FLQLETGAFNGLANLEVLTLT-QCN-- 114 (455)
T ss_dssp TTTTSSCT--TCCEEECCCCSTTCEECTTTTTT----CTTCCEEECTTCT---TCEECTTTTTTCTTCCEEECT-TSC--
T ss_pred hhHhccCc--cccEEECcCCcccceECcccccc----cccCCEEeCCCCc---cCccChhhccCcccCCEEeCC-CCC--
Confidence 44555666 89999999998753 3 344555 9999999999998 445567789999999999999 666
Q ss_pred cccc-cccc--ccCcCCcceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhccC--CcccEEecCCcccc
Q 011015 147 FIQK-IPKN--IEKLIHLKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGKL--RKLMYLYNEGTSCL 220 (495)
Q Consensus 147 ~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l--~~L~~L~L~~~~~~ 220 (495)
+.. .+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|......|..+..+ .+|+.|++++|.+.
T Consensus 115 -l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 115 -LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp -CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred -CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccc
Confidence 443 3443 889999999999999955555665 7899999999999998555566667665 78999999998654
Q ss_pred cccccc--------ccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCCh------hhhHhhccc--c
Q 011015 221 RYLPVG--------IGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDA------GEVRRAELE--K 284 (495)
Q Consensus 221 ~~~~~~--------i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~------~~~~~~~~~--~ 284 (495)
...+.. +..+++|++|++..|.+.......+......+.++.+.+......... .......+. .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 433222 335678899988887665322222222222355555555433111100 000001111 2
Q ss_pred ccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-
Q 011015 285 QKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP- 363 (495)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 363 (495)
.++|+.|+++.|.++ ...+..+..+++|+.|++++|.+.. +++.++..+++|+.|++++|.+.+..+.
T Consensus 274 ~~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 274 ASGVKTCDLSKSKIF---------ALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp TSCCCEEECCSSCCC---------EECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred ccCceEEEecCcccc---------ccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCccCCcChhH
Confidence 368999999998853 2235567788999999999999887 6677899999999999999988776555
Q ss_pred CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecC
Q 011015 364 LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDG 443 (495)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 443 (495)
++.+++|++|++++|. ++.+... .+..+++|++|++++|. ++.++ +..+..+++|++|++++
T Consensus 343 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 343 FENLDKLEVLDLSYNH-IRALGDQ-----------SFLGLPNLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp GTTCTTCCEEECCSSC-CCEECTT-----------TTTTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCS
T ss_pred hcCcccCCEEECCCCc-ccccChh-----------hccccccccEEECCCCc-cccCC-----HhHhccCCcccEEEccC
Confidence 8899999999999775 3332211 12368999999988876 55433 23567899999999999
Q ss_pred CcCccCCC
Q 011015 444 CPKLKALP 451 (495)
Q Consensus 444 c~~~~~l~ 451 (495)
|+.....|
T Consensus 405 N~l~~~~~ 412 (455)
T 3v47_A 405 NPWDCSCP 412 (455)
T ss_dssp SCBCCCTT
T ss_pred CCcccCCC
Confidence 98776665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.3e-26 Score=236.65 Aligned_cols=350 Identities=16% Similarity=0.112 Sum_probs=220.8
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCc
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKL 158 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l 158 (495)
.++++++++.++.+|..+ .++|++|++++|. +....|..|..+++|++|+++ ++. +..+ |..|.++
T Consensus 33 ~~~l~ls~~~L~~ip~~~------~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-~N~---l~~~~~~~~~~l 99 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL------PPRTKALSLSQNS---ISELRMPDISFLSELRVLRLS-HNR---IRSLDFHVFLFN 99 (562)
T ss_dssp CCEEECTTSCCCSCCTTS------CTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECC-SCC---CCEECTTTTTTC
T ss_pred CcEEEcCCCCCccCCCCC------CCCcCEEECCCCC---ccccChhhhccCCCccEEECC-CCC---CCcCCHHHhCCC
Confidence 478999999998877644 3789999999998 445456779999999999999 766 6555 6779999
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCccc--chhhccCCcccEEecCCccccccccccccCcccc--c
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLREL--PRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISL--R 234 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l--p~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L--~ 234 (495)
++|++|++++|. +..+|.. .+++|++|++++|. +..+ |..++++++|++|++++|.+.. ..+..+++| +
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 172 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLS 172 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred CCCCEEECCCCc-CCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---Cchhhhhhceee
Confidence 999999999999 7788876 89999999999998 5554 5789999999999999996654 345555566 9
Q ss_pred ccCeEEecC--ccCCccCccch-----------------------hcccccCCceeeccCCC------------------
Q 011015 235 EVTKFVVGG--GYDRACSLGSL-----------------------KKLNLLRKCSIRGLGGV------------------ 271 (495)
Q Consensus 235 ~L~l~~~~~--~~~~~~~~~~l-----------------------~~l~~L~~l~~~~~~~~------------------ 271 (495)
.|++..|.. .......+..+ ..+++|+.+++......
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999998876 32112222221 12334444444321100
Q ss_pred -------C--ChhhhHhhccccccccceEEEEEecCCCCCCccc----------------------hhHHHhhc------
Q 011015 272 -------S--DAGEVRRAELEKQKYLVELGLYFDQAGRRENEED----------------------EDERLLEA------ 314 (495)
Q Consensus 272 -------~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------~~~~~~~~------ 314 (495)
. .............++|+.|+++.|.+++...... ........
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 0 0000000000112367777777776543211000 00000000
Q ss_pred ----------------CCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCC--CC-CCCCCccceeec
Q 011015 315 ----------------LGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHL--PP-LGKLPSLEYLVI 375 (495)
Q Consensus 315 ----------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~-~~~l~~L~~L~l 375 (495)
...+++|++|++++|.... ..|.++..+++|+.|++++|.+.+.. |. ++.+++|++|++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD--SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT--TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCcccc--chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 0344566666666665544 22455556666666666666555421 22 556666666666
Q ss_pred cccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCC
Q 011015 376 ELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLL 455 (495)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~ 455 (495)
+++..-..++.. ...++++|+.|++++|. ++ +.+|..+. ++|++|++++|. ++.+|..+.
T Consensus 411 ~~N~l~~~~~~~-----------~~~~l~~L~~L~l~~n~-l~-----~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~ 470 (562)
T 3a79_B 411 SLNSLNSHAYDR-----------TCAWAESILVLNLSSNM-LT-----GSVFRCLP--PKVKVLDLHNNR-IMSIPKDVT 470 (562)
T ss_dssp TTSCCBSCCSSC-----------CCCCCTTCCEEECCSSC-CC-----GGGGSSCC--TTCSEEECCSSC-CCCCCTTTT
T ss_pred CCCcCCCccChh-----------hhcCcccCCEEECCCCC-CC-----cchhhhhc--CcCCEEECCCCc-CcccChhhc
Confidence 644311101111 11256778888866665 33 33333332 789999999985 558888888
Q ss_pred CCCCccEEEEeCCcch
Q 011015 456 QKTTLQKLWIWGCPIL 471 (495)
Q Consensus 456 ~l~~L~~L~l~~~~~l 471 (495)
.+++|++|++++|...
T Consensus 471 ~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 471 HLQALQELNVASNQLK 486 (562)
T ss_dssp SSCCCSEEECCSSCCC
T ss_pred CCCCCCEEECCCCCCC
Confidence 9999999999999753
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=7.4e-26 Score=236.69 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=35.8
Q ss_pred CCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 403 FPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 403 ~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+++|+.|+++++. ++.. +.+|..+..+++|++|++++|......+..+..+++|++|++++|+.
T Consensus 453 ~~~L~~L~l~~n~-l~~~---~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 453 VPSLQRLMLRRVA-LKNV---DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CTTCCEEECTTSC-CBCT---TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred Ccccccchhcccc-cccc---ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 4555555544443 2111 33455666677777777777654433334456667777777777654
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-26 Score=235.77 Aligned_cols=308 Identities=17% Similarity=0.102 Sum_probs=226.4
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
+++++.+++.+|. +....+..|..+++|++|+++ ++. +..+ +..++.+++|++|++++|.+.+..|..++.+
T Consensus 50 l~~l~~l~l~~~~---l~~lp~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNST---MRKLPAALLDSFRQVELLNLN-DLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GCCCSEEEESSCE---ESEECTHHHHHCCCCSEEECT-TSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCC---CCCcCHHHHccCCCCcEEECC-CCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 6778888888887 344345556778888888888 665 5555 4468888888888888888444444556788
Q ss_pred ccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccC
Q 011015 183 YNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLR 261 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 261 (495)
++|++|+|++|. +..+|.. ++.+++|++|++++|.+....|..++.+++|+.|++..|.+.. . .+..++.|+
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~---~~~~l~~L~ 195 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V---DLSLIPSLF 195 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---C---CGGGCTTCS
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---c---Chhhhhhhh
Confidence 888888888887 6666665 5788888888888887766666678888888888887776653 1 234455566
Q ss_pred CceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchh
Q 011015 262 KCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWI 341 (495)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 341 (495)
.+.+..... ..+...++|+.|++++|.++. ++. ...++|+.|++++|.+.. +.++
T Consensus 196 ~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~----------~~~--~~~~~L~~L~L~~n~l~~----~~~l 250 (597)
T 3oja_B 196 HANVSYNLL---------STLAIPIAVEELDASHNSINV----------VRG--PVNVELTILKLQHNNLTD----TAWL 250 (597)
T ss_dssp EEECCSSCC---------SEEECCTTCSEEECCSSCCCE----------EEC--SCCSCCCEEECCSSCCCC----CGGG
T ss_pred hhhcccCcc---------ccccCCchhheeeccCCcccc----------ccc--ccCCCCCEEECCCCCCCC----Chhh
Confidence 655544221 123445689999999887532 111 123689999999998877 5788
Q ss_pred hhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccc
Q 011015 342 MSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEW 420 (495)
Q Consensus 342 ~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 420 (495)
..+++|+.|++++|.+.+..|. ++.+++|++|++++|. ++.++.. ...+++|+.|++++|. ++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~l~~L~~L~Ls~N~-l~-- 314 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------GQPIPTLKVLDLSHNH-LL-- 314 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------SSCCTTCCEEECCSSC-CC--
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------cccCCCCcEEECCCCC-CC--
Confidence 9999999999999998887665 8999999999999765 3333221 1258999999988886 54
Q ss_pred ccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcchhH
Q 011015 421 DFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPILEE 473 (495)
Q Consensus 421 ~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l~~ 473 (495)
.+|..+..+++|++|++++|... .+| +..+++|+.|++++|+.-.+
T Consensus 315 ----~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 ----HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ----CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred ----ccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCCCCCh
Confidence 35566788999999999998754 444 66789999999999997543
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=241.72 Aligned_cols=345 Identities=15% Similarity=0.081 Sum_probs=231.6
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcC
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLI 159 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~ 159 (495)
+..+.+++..+.+|. - .+++++|++++|. +....|..|..+++|++|+++ ++.. ...+ |..|.+++
T Consensus 7 ~~~dcs~~~L~~vP~---l----p~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs-~n~~--~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---V----LNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELG-SQYT--PLTIDKEAFRNLP 73 (844)
T ss_dssp EEEEESCCCSSCCCS---S----CTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEEC-TTCC--CCEECTTTTSSCT
T ss_pred eEEEccCCCCCCCCC---C----CCCcCEEECCCCc---CCccChhHCcccccCeEEeCC-CCCC--ccccCHHHhcCCC
Confidence 455666777777775 2 6799999999998 445557779999999999999 5531 5566 77899999
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchh--hccCCcccEEecCCcccccccc-ccccCccccccc
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRG--IGKLRKLMYLYNEGTSCLRYLP-VGIGELISLREV 236 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~--l~~l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L 236 (495)
+|++|++++|.+.+..|..++++++|++|+|++|......|.. ++.+++|++|++++|.+....+ ..++++++|++|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 9999999999955566888999999999999999855556655 8999999999999997766544 568999999999
Q ss_pred CeEEecCccCCccCccchhcc--cccCCceeeccCCCCChhhhHhhcccccc------ccceEEEEEecCCCCCCccch-
Q 011015 237 TKFVVGGGYDRACSLGSLKKL--NLLRKCSIRGLGGVSDAGEVRRAELEKQK------YLVELGLYFDQAGRRENEEDE- 307 (495)
Q Consensus 237 ~l~~~~~~~~~~~~~~~l~~l--~~L~~l~~~~~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~~- 307 (495)
++..|.+... ....+..+ ++|+.+.+......... ...+..+. .|+.|+++.|.++........
T Consensus 154 ~Ls~N~i~~~---~~~~l~~l~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 154 DFSSNQIFLV---CEHELEPLQGKTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp EEESSCCCCC---CSGGGHHHHHCSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred ECCCCcCCee---CHHHcccccCCccceEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 9999877642 22334444 67887777654322111 11122222 488888888865432110000
Q ss_pred --------------------------hHHHhhcCCC--CCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCC
Q 011015 308 --------------------------DERLLEALGP--PPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCE 359 (495)
Q Consensus 308 --------------------------~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 359 (495)
.......+.. +++|+.|++++|.... +++..+..+++|+.|++++|.+.+
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE--ECSCCSSSCCCCCEEEEESCCCCE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc--cChhhhhcCCCCCEEECCCCcCCC
Confidence 0000111111 3578888888877665 546677778888888888887776
Q ss_pred CCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccce
Q 011015 360 HLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSS 438 (495)
Q Consensus 360 ~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~ 438 (495)
..+. +..+++|++|++++|. ++.+.. ....++++|+.|+++++. ++.. .+..+..+++|++
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-i~~~-----~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNL-LGELYS-----------SNFYGLPKVAYIDLQKNH-IAII-----QDQTFKFLEKLQT 366 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCC-CSCCCS-----------CSCSSCTTCCEEECCSCC-CCCC-----CSSCSCSCCCCCE
T ss_pred CChHHhcCCCCCCEEECCCCC-CCccCH-----------HHhcCCCCCCEEECCCCC-CCcc-----ChhhhcCCCCCCE
Confidence 6554 7778888888887654 111111 012257778888866664 4332 2334666777777
Q ss_pred eeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 439 LSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 439 L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
|++++|.. ..++ .+++|+.|++++|+.
T Consensus 367 L~Ls~N~l-~~i~----~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 367 LDLRDNAL-TTIH----FIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEETCCS-CCCS----SCCSCSEEEEESCCC
T ss_pred EECCCCCC-Cccc----CCCCcchhccCCCCc
Confidence 77777653 2332 255666666666643
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=237.29 Aligned_cols=149 Identities=20% Similarity=0.107 Sum_probs=118.7
Q ss_pred EEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCc
Q 011015 83 LMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHL 161 (495)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L 161 (495)
++..+..+..+|..+ .+.+++|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..|.++++|
T Consensus 12 ~~c~~~~l~~ip~~l------~~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls-~n~---i~~i~~~~~~~l~~L 78 (570)
T 2z63_A 12 YQCMELNFYKIPDNL------PFSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLS-RCE---IQTIEDGAYQSLSHL 78 (570)
T ss_dssp EECCSSCCSSCCSSS------CSSCCEEECCSCCC---CEECTTTTTTCSSCCEEECT-TCC---CCEECTTTTTTCTTC
T ss_pred EEeCCCCccccCCCc------cccccEEEccCCcc---CccChhHhhCCCCceEEECC-CCc---CCccCcccccCchhC
Confidence 444444555566543 35799999999984 44445678999999999999 776 6555 5678999999
Q ss_pred ceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccccc-cccccccCcccccccCeE
Q 011015 162 KYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLR-YLPVGIGELISLREVTKF 239 (495)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~-~~~~~i~~l~~L~~L~l~ 239 (495)
++|++++|.+.+..|..++++++|++|++++|. +..++. .++.+++|++|++++|.+.. .+|..++++++|++|++.
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 999999999444445779999999999999998 666665 58999999999999997655 478899999999999998
Q ss_pred EecCcc
Q 011015 240 VVGGGY 245 (495)
Q Consensus 240 ~~~~~~ 245 (495)
.|....
T Consensus 158 ~n~l~~ 163 (570)
T 2z63_A 158 SNKIQS 163 (570)
T ss_dssp TSCCCE
T ss_pred CCccce
Confidence 776543
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.3e-26 Score=234.51 Aligned_cols=323 Identities=17% Similarity=0.105 Sum_probs=211.5
Q ss_pred EEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCc
Q 011015 83 LMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHL 161 (495)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L 161 (495)
.+..++.++.+|..+ .+.|++|++++|. +....|..|..+++|++|+++ ++. +..+ |..+..+++|
T Consensus 10 c~~~~~~l~~ip~~~------~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-~n~---i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL------TAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILK-SSR---INTIEGDAFYSLGSL 76 (549)
T ss_dssp EECTTSCCSSCCSCC------CTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECT-TSC---CCEECTTTTTTCTTC
T ss_pred EECCCCccccccccC------CCCccEEECcCCc---cCccChhhhhcCCcccEEECC-CCC---cCccChhhccccccC
Confidence 344455666666543 4689999999998 445456778999999999999 666 5555 5779999999
Q ss_pred ceEecCCCCcccccchhhhccccCcEeecCCCcCCc-ccchhhccCCcccEEecCCcccccccc-ccccCcccccccCeE
Q 011015 162 KYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLR-ELPRGIGKLRKLMYLYNEGTSCLRYLP-VGIGELISLREVTKF 239 (495)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L~l~ 239 (495)
++|++++|.+.+..|..++.+++|++|++++|.... ..|..++.+++|++|++++|...+.+| ..+..+++|++|++.
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 999999999444444559999999999999998333 356789999999999999997566666 579999999999999
Q ss_pred EecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCC----Cc-----------
Q 011015 240 VVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRE----NE----------- 304 (495)
Q Consensus 240 ~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~----------- 304 (495)
.|.... .....+..+++|+.+.+....... . ....+..+++|+.|+++.|.++... ..
T Consensus 157 ~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~-~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 157 ALSLRN---YQSQSLKSIRDIHHLTLHLSESAF-L---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp ETTCCE---ECTTTTTTCSEEEEEEEECSBSTT-H---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred CCcccc---cChhhhhccccCceEecccCcccc-c---chhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 988764 233445556666666665433211 1 1122334567777777777654420 00
Q ss_pred -------cchhHHHhhcC------------------------------CC-----------------------------C
Q 011015 305 -------EDEDERLLEAL------------------------------GP-----------------------------P 318 (495)
Q Consensus 305 -------~~~~~~~~~~l------------------------------~~-----------------------------~ 318 (495)
......+...+ .. .
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 00000011000 11 1
Q ss_pred CCcceEEEeeecCcCCCCCCchh-hhccccceeeecCccCCCCCC----CCCCCCccceeeccccccceEeCccccCCCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWI-MSLTNLRDLSLSKWRNCEHLP----PLGKLPSLEYLVIELMNSVKRVGNEFLGVES 393 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 393 (495)
++|+.|++++|.... + |.++ ..+++|+.|++++|.+.+..| .++.+++|++|++++|. ++.+... +
T Consensus 310 ~~L~~L~l~~n~l~~--i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~--- 380 (549)
T 2z81_A 310 EKVKRITVENSKVFL--V-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT--G--- 380 (549)
T ss_dssp TTCCEEEEESSCCCC--C-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH--H---
T ss_pred ccceEEEeccCcccc--C-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc--h---
Confidence 356666666666554 6 4443 578888899998888776442 26778888888888664 2211100 0
Q ss_pred CCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCc
Q 011015 394 DTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCP 445 (495)
Q Consensus 394 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 445 (495)
..+..+++|+.|++++|. ++ .+|..+..+++|++|++++|.
T Consensus 381 ----~~~~~l~~L~~L~Ls~N~-l~------~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 381 ----EILLTLKNLTSLDISRNT-FH------PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp ----HHGGGCTTCCEEECTTCC-CC------CCCSCCCCCTTCCEEECTTSC
T ss_pred ----hhhhcCCCCCEEECCCCC-Cc------cCChhhcccccccEEECCCCC
Confidence 012257777777777664 43 234455566666666666655
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=7.5e-26 Score=216.78 Aligned_cols=302 Identities=18% Similarity=0.179 Sum_probs=233.5
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++++++.++.+..++ .+.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++ .+..+
T Consensus 45 ~L~~L~l~~~~i~~~~-~~~~----~~~L~~L~l~~n~i~---~-~~~-~~~l~~L~~L~L~-~n~---i~~~~-~~~~l 109 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQ-GIEY----LTNLEYLNLNGNQIT---D-ISP-LSNLVKLTNLYIG-TNK---ITDIS-ALQNL 109 (347)
T ss_dssp TCSEEECCSSCCCCCT-TGGG----CTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECC-SSC---CCCCG-GGTTC
T ss_pred cccEEEEeCCccccch-hhhh----cCCccEEEccCCccc---c-chh-hhcCCcCCEEEcc-CCc---ccCch-HHcCC
Confidence 7899999999888665 3555 999999999999853 3 344 8899999999999 666 66665 58999
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|. +..++. +..+++|++|++++|.....++ .+..+++|++|++++|.+... +. +..+++|+.|++
T Consensus 110 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred CcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 999999999999 777766 8899999999999997555554 589999999999999965433 33 789999999999
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP 318 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (495)
..|.... +..+..+++|+.+.+......... .+..+++|+.|++++|.++. ...+..+
T Consensus 185 ~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~-----------~~~~~~l 242 (347)
T 4fmz_A 185 NYNQIED-----ISPLASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITD-----------LSPLANL 242 (347)
T ss_dssp TTSCCCC-----CGGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCC-----------CGGGTTC
T ss_pred cCCcccc-----cccccCCCccceeecccCCCCCCc------hhhcCCcCCEEEccCCccCC-----------CcchhcC
Confidence 8876653 233677788888777765433221 16778999999999998643 1126788
Q ss_pred CCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGS 398 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 398 (495)
++|+.|++++|.... + ..+..+++|+.|++++|.+.+ ++.+..+++|++|++++|.. +.....
T Consensus 243 ~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~----------- 305 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD--I--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL-GNEDME----------- 305 (347)
T ss_dssp TTCCEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CGGGHH-----------
T ss_pred CCCCEEECCCCccCC--C--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC-CCcChh-----------
Confidence 999999999998877 4 467899999999999997766 46688999999999997752 111111
Q ss_pred ccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCc
Q 011015 399 SVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKL 447 (495)
Q Consensus 399 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 447 (495)
.+..+++|+.|++++|+ ++... | +..+++|++|++++|++.
T Consensus 306 ~l~~l~~L~~L~L~~n~-l~~~~-----~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH-ITDIR-----P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSS-CCCCG-----G--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCc-ccccc-----C--hhhhhccceeehhhhccc
Confidence 12368999999988887 54432 2 668999999999998753
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9e-26 Score=225.86 Aligned_cols=296 Identities=17% Similarity=0.070 Sum_probs=231.2
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccc-ccc
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPK-NIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~ 156 (495)
.++.|++.++.+..++ ..+.. +++|++|++++|. +....|..|..+++|++|+++ ++. +..+|. .+.
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~ 101 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFAS----FPHLEELELNENI---VSAVEPGAFNNLFNLRTLGLR-SNR---LKLIPLGVFT 101 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTT----CTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECC-SSC---CCSCCTTSST
T ss_pred CCcEEECCCCccceECHhHccC----CCCCCEEECCCCc---cCEeChhhhhCCccCCEEECC-CCc---CCccCccccc
Confidence 7899999999998754 44555 9999999999998 445557789999999999999 776 667754 578
Q ss_pred CcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCccccccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L 236 (495)
++++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 99999999999999555667788999999999999998444456678999999999999997665555568999999999
Q ss_pred CeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCC
Q 011015 237 TKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALG 316 (495)
Q Consensus 237 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 316 (495)
++..+.... .....+..+++|+.|.+.......... .......+|+.|+++.|.++. .....+.
T Consensus 182 ~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~---------~~~~~~~ 245 (477)
T 2id5_A 182 RLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMT----PNCLYGLNLTSLSITHCNLTA---------VPYLAVR 245 (477)
T ss_dssp EEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEEC----TTTTTTCCCSEEEEESSCCCS---------CCHHHHT
T ss_pred eCCCCcCcE---eChhhcccCcccceeeCCCCccccccC----cccccCccccEEECcCCcccc---------cCHHHhc
Confidence 999887764 223346677888888887754432211 112233589999999998542 1113456
Q ss_pred CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCC
Q 011015 317 PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDT 395 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 395 (495)
.+++|+.|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +..+++|++|+++++. ++.+....
T Consensus 246 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~------- 315 (477)
T 2id5_A 246 HLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESV------- 315 (477)
T ss_dssp TCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGG-------
T ss_pred CccccCeeECCCCcCCc--cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhH-------
Confidence 78999999999998887 7677788999999999999988887665 8899999999999764 33333222
Q ss_pred CCCccccCCccceeeecccc
Q 011015 396 DGSSVIAFPKLKLLDFYIMK 415 (495)
Q Consensus 396 ~~~~~~~~~~L~~L~l~~~~ 415 (495)
...+++|+.|++++++
T Consensus 316 ----~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 316 ----FHSVGNLETLILDSNP 331 (477)
T ss_dssp ----BSCGGGCCEEECCSSC
T ss_pred ----cCCCcccCEEEccCCC
Confidence 1268899999988776
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.9e-25 Score=220.84 Aligned_cols=302 Identities=16% Similarity=0.112 Sum_probs=187.9
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.+++++++++.+..+| .+.. +++|++|++++|.+.. +| +..+++|++|+++ ++. +..++ ++.+
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~----l~~L~~L~Ls~n~l~~----~~--~~~l~~L~~L~Ls-~N~---l~~~~--~~~l 105 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEK----LTGLTKLICTSNNITT----LD--LSQNTNLTYLACD-SNK---LTNLD--VTPL 105 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGG----CTTCSEEECCSSCCSC----CC--CTTCTTCSEEECC-SSC---CSCCC--CTTC
T ss_pred CCCEEEccCCCcccCh-hhcc----cCCCCEEEccCCcCCe----Ec--cccCCCCCEEECc-CCC---Cceee--cCCC
Confidence 6788888888777654 4444 8888888888887543 23 6778888888888 665 55554 7778
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|++++|...+.+ .++.+++|+.|++
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 888888888887 55565 7788888888888887 55553 677888888888888555544 3677788888888
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP 318 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (495)
..|.+.. . . +..++.|+.+.+........ .+..+++|+.|+++.|.++. ++ +..+
T Consensus 178 s~n~l~~--l---~-l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~----------ip--~~~l 232 (457)
T 3bz5_A 178 SFNKITE--L---D-VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE----------ID--VTPL 232 (457)
T ss_dssp CSSCCCC--C---C-CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC----------CC--CTTC
T ss_pred CCCccce--e---c-cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc----------cC--cccc
Confidence 7776653 1 1 44556666666554322211 25566777777777776532 11 5566
Q ss_pred CCcceEEEeeecCcCCCCCCchhhhcc-------ccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWIMSLT-------NLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGV 391 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 391 (495)
++|+.|++++|.+.. +++..+..++ +|+.|++++|...+.+| .+.+++|+.|++++|..+..++......
T Consensus 233 ~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcc
Confidence 777777777777665 4333333222 34455555555444443 4566777777777776555443211110
Q ss_pred CCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcC
Q 011015 392 ESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPK 446 (495)
Q Consensus 392 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 446 (495)
.. ..+.++++|+.|+++++. ++.+ .+..+++|++|++++|..
T Consensus 310 ~~----L~l~~~~~L~~L~L~~N~-l~~l--------~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 310 TE----LDLSQNPKLVYLYLNNTE-LTEL--------DVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp SC----CCCTTCTTCCEEECTTCC-CSCC--------CCTTCTTCSEEECCSSCC
T ss_pred eE----echhhcccCCEEECCCCc-cccc--------ccccCCcCcEEECCCCCC
Confidence 00 012245566666655544 3332 145667777777777653
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-25 Score=219.19 Aligned_cols=306 Identities=13% Similarity=0.038 Sum_probs=235.1
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~ 157 (495)
.++++++.++.+..+|..+.. .+++|++|++++|. +....+..|..+++|++|+++ ++. +..+ |..+..
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~---~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~ 115 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLD---SFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-FNA---IRYLPPHVFQN 115 (390)
T ss_dssp CCSEEEEESCEESEECTHHHH---HCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-SSC---CCCCCTTTTTT
T ss_pred CceEEEecCCchhhCChhHhc---ccccCcEEECCCCc---ccccChhhccCCCCcCEEECC-CCC---CCcCCHHHhcC
Confidence 789999999999888766432 39999999999998 445455678999999999999 666 5555 566899
Q ss_pred cCCcceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCccccccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L 236 (495)
+++|++|++++|. +..+|.. +..+++|++|++++|......|..+..+++|++|++++|.+... .++.+++|+.|
T Consensus 116 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred CCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccccccee
Confidence 9999999999999 7778765 58899999999999984444455689999999999999965442 35677889999
Q ss_pred CeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCC
Q 011015 237 TKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALG 316 (495)
Q Consensus 237 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 316 (495)
++..+.... +.....|+.+.+........ .....++|+.|++++|.++. ...+.
T Consensus 192 ~l~~n~l~~--------~~~~~~L~~L~l~~n~l~~~-------~~~~~~~L~~L~l~~n~l~~-----------~~~l~ 245 (390)
T 3o6n_A 192 NVSYNLLST--------LAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD-----------TAWLL 245 (390)
T ss_dssp ECCSSCCSE--------EECCSSCSEEECCSSCCCEE-------ECCCCSSCCEEECCSSCCCC-----------CGGGG
T ss_pred ecccccccc--------cCCCCcceEEECCCCeeeec-------cccccccccEEECCCCCCcc-----------cHHHc
Confidence 887665442 33344566666655432211 11234789999999998643 24566
Q ss_pred CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCC
Q 011015 317 PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTD 396 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 396 (495)
.+++|+.|++++|.... +++..+..+++|+.|++++|.+.+.......+++|++|++++|. ++.++..
T Consensus 246 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------- 313 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN--------- 313 (390)
T ss_dssp GCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG---------
T ss_pred CCCCccEEECCCCcCCC--cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc---------
Confidence 78999999999998877 65788899999999999999887654447789999999999775 3322221
Q ss_pred CCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCcc
Q 011015 397 GSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLK 448 (495)
Q Consensus 397 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 448 (495)
+..+++|+.|++++|. ++..+ +..+++|++|++++|+...
T Consensus 314 ---~~~l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 314 ---QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ---HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEEH
T ss_pred ---ccccCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCCCccc
Confidence 2368999999999887 66553 4578999999999987654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.3e-25 Score=226.57 Aligned_cols=306 Identities=13% Similarity=0.037 Sum_probs=234.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~ 157 (495)
.++.+++.++.+..+|..+.. .+++|++|++++|. +....|..|..+++|++|+++ ++. +..+ |..+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~---~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~ 121 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLD---SFRQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMG-FNA---IRYLPPHVFQN 121 (597)
T ss_dssp CCSEEEESSCEESEECTHHHH---HCCCCSEEECTTSC---CCEECTTTTTTCTTCCEEECC-SSC---CCCCCTTTTTT
T ss_pred CceEEEeeCCCCCCcCHHHHc---cCCCCcEEECCCCC---CCCCChHHhcCCCCCCEEECC-CCc---CCCCCHHHHcC
Confidence 678899999988887766433 39999999999998 445456679999999999999 666 5555 556899
Q ss_pred cCCcceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCccccccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L 236 (495)
+++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++++|.+... .++.+++|+.|
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L 197 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 197 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEE
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhh
Confidence 9999999999999 6677765 58999999999999984444555799999999999999965442 25677889999
Q ss_pred CeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCC
Q 011015 237 TKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALG 316 (495)
Q Consensus 237 ~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 316 (495)
++..|.... +.....|+.|.+......... ....++|+.|++++|.+++ +..+.
T Consensus 198 ~l~~n~l~~--------l~~~~~L~~L~ls~n~l~~~~-------~~~~~~L~~L~L~~n~l~~-----------~~~l~ 251 (597)
T 3oja_B 198 NVSYNLLST--------LAIPIAVEELDASHNSINVVR-------GPVNVELTILKLQHNNLTD-----------TAWLL 251 (597)
T ss_dssp ECCSSCCSE--------EECCTTCSEEECCSSCCCEEE-------CSCCSCCCEEECCSSCCCC-----------CGGGG
T ss_pred hcccCcccc--------ccCCchhheeeccCCcccccc-------cccCCCCCEEECCCCCCCC-----------Chhhc
Confidence 887665442 334455666666554322111 1123689999999998653 25567
Q ss_pred CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCC
Q 011015 317 PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTD 396 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 396 (495)
.+++|+.|++++|.+.. ++|..+..+++|+.|++++|.+.+..+....+++|++|++++|. ++.++..
T Consensus 252 ~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~--------- 319 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN--------- 319 (597)
T ss_dssp GCTTCSEEECCSSCCCE--EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG---------
T ss_pred cCCCCCEEECCCCccCC--CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc---------
Confidence 78999999999998877 65788999999999999999887754447789999999999775 2222221
Q ss_pred CCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCcc
Q 011015 397 GSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLK 448 (495)
Q Consensus 397 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 448 (495)
+..+++|+.|++++|. +...+ +..+++|++|++++|+...
T Consensus 320 ---~~~l~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 320 ---QPQFDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ---HHHHTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSCEEH
T ss_pred ---cccCCCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCCCCC
Confidence 2368999999999887 65543 4578999999999988643
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1e-24 Score=226.28 Aligned_cols=361 Identities=14% Similarity=0.051 Sum_probs=226.5
Q ss_pred ceEEEEEEeccCCCcch-hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-cccc
Q 011015 79 KVLHLMLTVDVGTSVPI-AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~ 156 (495)
.+++|++++|.++.++. .|.+ +++|++|++++|. +....|.+|..+++|++|+|+ +|. +..+| ..|.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~----l~~L~~L~Ls~N~---i~~i~~~~f~~L~~L~~L~Ls-~N~---l~~l~~~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFS----FPELQVLDLSRCE---IQTIEDGAYQSLSHLSTLILT-GNP---IQSLALGAFS 121 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTT----CTTCCEEECTTCC---CCEECTTTTTTCTTCCEEECT-TCC---CCEECGGGGT
T ss_pred CCCEEEeeCCCCCCCCHHHHhC----CCCCCEEECCCCc---CCCcChhHhcCCCCCCEEEcc-CCc---CCCCCHHHhc
Confidence 78999999999988764 4665 9999999999998 445456679999999999999 777 77775 5689
Q ss_pred CcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCc-ccchhhccCCcccEEecCCccccccccccccCccccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLR-ELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLR 234 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~ 234 (495)
++++|++|++++|. +..+| ..++++++|++|++++|.... ..|..++.+++|++|++++|.+....+..+..+.+++
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999999999 66665 458899999999999998333 4677889999999999999866544343332222211
Q ss_pred c---------------------------cCeEEecC-------------------------ccC----------------
Q 011015 235 E---------------------------VTKFVVGG-------------------------GYD---------------- 246 (495)
Q Consensus 235 ~---------------------------L~l~~~~~-------------------------~~~---------------- 246 (495)
. +.+..+.. ...
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 1 11100000 000
Q ss_pred -----------------CccC-------------------ccchhcccccCCceeeccC---------------------
Q 011015 247 -----------------RACS-------------------LGSLKKLNLLRKCSIRGLG--------------------- 269 (495)
Q Consensus 247 -----------------~~~~-------------------~~~l~~l~~L~~l~~~~~~--------------------- 269 (495)
.... +..+.....++.+.+....
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 0000 0000001111111111100
Q ss_pred -------------------CCCCh-hhhHhhccccccccceEEEEEecCCCCCC---------------ccchhHHHhhc
Q 011015 270 -------------------GVSDA-GEVRRAELEKQKYLVELGLYFDQAGRREN---------------EEDEDERLLEA 314 (495)
Q Consensus 270 -------------------~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~ 314 (495)
..... ..........+.+|+.+++..+....... ...........
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 00000 00000111223456666655443110000 00000111223
Q ss_pred CCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCC-CCC-CCCCCccceeeccccccceEeCccccCCC
Q 011015 315 LGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEH-LPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVE 392 (495)
Q Consensus 315 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (495)
+..+++++.++++.+.... .++..+..++.|+.|++++|..... .|. +..+++|++|++++|. ++.+....
T Consensus 441 ~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~---- 513 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA---- 513 (635)
T ss_dssp TTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT----
T ss_pred ccccccccccccccccccc--ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH----
Confidence 4455677777777776655 4456667788888888888875543 343 7888899999998775 43332221
Q ss_pred CCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCC-CCccEEEEeCCcch
Q 011015 393 SDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQK-TTLQKLWIWGCPIL 471 (495)
Q Consensus 393 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l-~~L~~L~l~~~~~l 471 (495)
+.++++|+.|+++++. ++.+ .|..+..+++|++|++++|......|..+..+ ++|++|++++||..
T Consensus 514 -------f~~l~~L~~L~Ls~N~-l~~l-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 514 -------FNSLSSLQVLNMSHNN-FFSL-----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp -------TTTCTTCCEEECTTSC-CCBC-----CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred -------HcCCCCCCEEECCCCc-CCCC-----ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 2268999999977775 4443 34567789999999999998777777778777 68999999998863
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=4.7e-25 Score=207.48 Aligned_cols=248 Identities=19% Similarity=0.177 Sum_probs=189.6
Q ss_pred ceEEEEEEeccCCC---cchhhhcccccCCCccEEEEcC-CccCcccccchHHhhcCCeeeEEEccCccCcccccccccc
Q 011015 79 KVLHLMLTVDVGTS---VPIAIWNNVKRMRRLRSLLVEG-GDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN 154 (495)
Q Consensus 79 ~~~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~ 154 (495)
+++++++.++.+.. +|..+.. +++|++|++++ |. +.+.+|..|..+++|++|+++ ++.. ...+|..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~----l~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls-~n~l--~~~~p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN----LPYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYIT-HTNV--SGAIPDF 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG----CTTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEE-EECC--EEECCGG
T ss_pred eEEEEECCCCCccCCcccChhHhC----CCCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECc-CCee--CCcCCHH
Confidence 78999999998874 5666665 99999999985 66 445578778999999999998 6661 3367888
Q ss_pred ccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCC-cccEEecCCccccccccccccCcccc
Q 011015 155 IEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLR-KLMYLYNEGTSCLRYLPVGIGELISL 233 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~L~~~~~~~~~~~~i~~l~~L 233 (495)
+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..++.++ +|++|++++|.+.+..|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 89999999999999986668888899999999999999985557888888887 899999999987778888887776 8
Q ss_pred cccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhh
Q 011015 234 REVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLE 313 (495)
Q Consensus 234 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 313 (495)
+.|++..|.+... ....+..+++|+.|+++.|.++. ...
T Consensus 200 ~~L~Ls~N~l~~~-------------------------------~~~~~~~l~~L~~L~L~~N~l~~----------~~~ 238 (313)
T 1ogq_A 200 AFVDLSRNMLEGD-------------------------------ASVLFGSDKNTQKIHLAKNSLAF----------DLG 238 (313)
T ss_dssp SEEECCSSEEEEC-------------------------------CGGGCCTTSCCSEEECCSSEECC----------BGG
T ss_pred cEEECcCCcccCc-------------------------------CCHHHhcCCCCCEEECCCCceee----------ecC
Confidence 8887776654320 01234456678888888776421 122
Q ss_pred cCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeecccccc
Q 011015 314 ALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNS 380 (495)
Q Consensus 314 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 380 (495)
.+..+++|++|++++|.+.. .+ |.++..+++|+.|++++|.+.+.+|..+.+++|+.|++++++.
T Consensus 239 ~~~~l~~L~~L~Ls~N~l~~-~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 239 KVGLSKNLNGLDLRNNRIYG-TL-PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp GCCCCTTCCEEECCSSCCEE-CC-CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred cccccCCCCEEECcCCcccC-cC-ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 35567888888888887764 14 7778888888888888888887777777788888888876553
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.3e-24 Score=203.07 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=60.8
Q ss_pred CcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCC
Q 011015 320 NLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGS 398 (495)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 398 (495)
+|+.|++++|.... +++..+..+++|+.|++++|.+.+..+. +..+++|++|++++|. ++.++..
T Consensus 194 ~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~----------- 259 (332)
T 2ft3_A 194 TLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG----------- 259 (332)
T ss_dssp SCSCCBCCSSCCCC--CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-----------
T ss_pred CCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-----------
Confidence 34444444444433 3234444555555555555544443332 4455555555555432 1111111
Q ss_pred ccccCCccceeeeccccccccccccccccccc-ccCcccceeeecCCcCc--cCCCcCCCCCCCccEEEEeCCc
Q 011015 399 SVIAFPKLKLLDFYIMKELEEWDFGTAIKGEI-IIMPRLSSLSIDGCPKL--KALPDHLLQKTTLQKLWIWGCP 469 (495)
Q Consensus 399 ~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~-~~~~~L~~L~l~~c~~~--~~l~~~~~~l~~L~~L~l~~~~ 469 (495)
+..+++|+.|+++++. ++..+...-.+... ...++|+.|++++|+.. ...|..+..+++|+.+++++|.
T Consensus 260 -l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 -LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1245555555555544 43332110000000 11456777777777654 2344556667777777777764
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.2e-24 Score=209.96 Aligned_cols=306 Identities=18% Similarity=0.130 Sum_probs=228.1
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+++|++|++++|.+. + +| .+..+++|++|+++ ++. +..+| ++.+++|++|++++|. +..+| ++.++
T Consensus 41 l~~L~~L~Ls~n~l~---~-~~-~l~~l~~L~~L~Ls-~n~---l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT---D-MT-GIEKLTGLTKLICT-SNN---ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLT 106 (457)
T ss_dssp HTTCCEEECCSSCCC---C-CT-TGGGCTTCSEEECC-SSC---CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCT
T ss_pred cCCCCEEEccCCCcc---c-Ch-hhcccCCCCEEEcc-CCc---CCeEc--cccCCCCCEEECcCCC-Cceee--cCCCC
Confidence 999999999999854 3 45 38899999999999 776 66665 8899999999999999 66665 88999
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKC 263 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l 263 (495)
+|++|++++|. +..+| ++.+++|++|++++|.+.. + .++.+++|+.|++..|.... .. .+..+++|+.|
T Consensus 107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~--~~---~~~~l~~L~~L 175 (457)
T 3bz5_A 107 KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKIT--KL---DVTPQTQLTTL 175 (457)
T ss_dssp TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCC--CC---CCTTCTTCCEE
T ss_pred cCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccc--cc---ccccCCcCCEE
Confidence 99999999998 66665 8899999999999997655 3 37889999999998875443 11 35667778888
Q ss_pred eeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhh
Q 011015 264 SIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMS 343 (495)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 343 (495)
++........ .+..+++|+.|+++.|.++.. .+..+++|+.|++++|.+.. + | +..
T Consensus 176 ~ls~n~l~~l-------~l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~--i-p--~~~ 231 (457)
T 3bz5_A 176 DCSFNKITEL-------DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTE--I-D--VTP 231 (457)
T ss_dssp ECCSSCCCCC-------CCTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSC--C-C--CTT
T ss_pred ECCCCcccee-------ccccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccc--c-C--ccc
Confidence 7765433221 166789999999999986431 36778999999999999887 6 4 678
Q ss_pred ccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeC---ccccCCCCCCCCCccccCCccceeeeccccccccc
Q 011015 344 LTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVG---NEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEW 420 (495)
Q Consensus 344 ~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 420 (495)
+++|+.|++++|.+.+.. .+.+++|+.|+++++. ++.+. +.+.+..+ ...+++|+.|++++|..+..+
T Consensus 232 l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCC-CSCCCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEE
T ss_pred cCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC-CCEEECCCCccCCccc------ccccccCCEEECCCCccccee
Confidence 999999999999887643 4455666555554322 22111 11111111 236899999999999765554
Q ss_pred ccccc--cccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 421 DFGTA--IKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 421 ~~~~~--l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+.... -.-.+..+++|++|++++|...+ ++ +..+++|+.|++++|+.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCC
Confidence 42110 00135677899999999987544 54 88899999999999975
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.3e-24 Score=201.49 Aligned_cols=231 Identities=23% Similarity=0.262 Sum_probs=131.8
Q ss_pred CCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCccc
Q 011015 131 LTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLM 210 (495)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 210 (495)
..++++|+++ ++. +..+|..+..+++|++|++++|. +..+|..++.+++|++|++++|. +..+|..++.+++|+
T Consensus 80 ~~~l~~L~L~-~n~---l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELR-SVP---LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEE-SSC---CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCC
T ss_pred ccceeEEEcc-CCC---chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCC
Confidence 3556666666 444 55566666666666666666666 44666666666666666666665 446666666666666
Q ss_pred EEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccce
Q 011015 211 YLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVE 290 (495)
Q Consensus 211 ~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 290 (495)
+|++++|...+.+|..+... . . ...+..+++|+.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~-----------~-------------------------~----------~~~~~~l~~L~~ 187 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAST-----------D-------------------------A----------SGEHQGLVNLQS 187 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEE-----------C------------------------------------CCCEEESTTCCE
T ss_pred EEECCCCCCccccChhHhhc-----------c-------------------------c----------hhhhccCCCCCE
Confidence 66666665544444433210 0 0 011334455666
Q ss_pred EEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCc
Q 011015 291 LGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPS 369 (495)
Q Consensus 291 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~ 369 (495)
|++++|.++ .++..+..+++|+.|++++|.+.. + |..+..+++|+.|++++|.+.+.+|. ++.
T Consensus 188 L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~N~l~~--l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--- 251 (328)
T 4fcg_A 188 LRLEWTGIR----------SLPASIANLQNLKSLKIRNSPLSA--L-GPAIHHLPKLEELDLRGCTALRNYPPIFGG--- 251 (328)
T ss_dssp EEEEEECCC----------CCCGGGGGCTTCCEEEEESSCCCC--C-CGGGGGCTTCCEEECTTCTTCCBCCCCTTC---
T ss_pred EECcCCCcC----------cchHhhcCCCCCCEEEccCCCCCc--C-chhhccCCCCCEEECcCCcchhhhHHHhcC---
Confidence 666666532 122333444555555555555444 4 33444555555555555544444443 333
Q ss_pred cceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccC
Q 011015 370 LEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKA 449 (495)
Q Consensus 370 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 449 (495)
+++|+.|++++|.. .+.+|..+..+++|++|+|++|+..+.
T Consensus 252 ---------------------------------l~~L~~L~L~~n~~------~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 252 ---------------------------------RAPLKRLILKDCSN------LLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ---------------------------------CCCCCEEECTTCTT------CCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred ---------------------------------CCCCCEEECCCCCc------hhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 55555555444432 234445566777777788887777777
Q ss_pred CCcCCCCCCCccEEEEeCC
Q 011015 450 LPDHLLQKTTLQKLWIWGC 468 (495)
Q Consensus 450 l~~~~~~l~~L~~L~l~~~ 468 (495)
+|..+..+++|+.+++..+
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 7777777777777777654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=6.6e-25 Score=206.49 Aligned_cols=132 Identities=23% Similarity=0.277 Sum_probs=100.0
Q ss_pred CCccEEEEcCCccCcccc--cchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 105 RRLRSLLVEGGDYSWSSK--VLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
.+++.|++++|.+ .+ .+|..+..+++|++|++++++.. ...+|..+..+++|++|++++|.+.+.+|..+..+
T Consensus 50 ~~l~~L~L~~~~l---~~~~~~~~~l~~l~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNL---PKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCC---SSCEECCGGGGGCTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCc---cCCcccChhHhCCCCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 5788899988874 33 46777888889999998832331 45678888888889999998888556788888888
Q ss_pred ccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcc-cccccCeEEe
Q 011015 183 YNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELI-SLREVTKFVV 241 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~-~L~~L~l~~~ 241 (495)
++|++|++++|.....+|..++.+++|++|++++|.+.+.+|..+..++ +|+.|++..|
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 8899999888884457888888888888888888876666676666655 5555555443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.5e-23 Score=199.15 Aligned_cols=274 Identities=17% Similarity=0.101 Sum_probs=128.1
Q ss_pred CeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCccc
Q 011015 132 TCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLM 210 (495)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 210 (495)
+.|++|+++ ++. +..++ ..+.++++|++|++++|.+.+..|..++.+++|++|++++|. +..+|..+. ++|+
T Consensus 52 ~~l~~L~L~-~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQ-NNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECC-SSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCC
T ss_pred CCCeEEECC-CCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--cccc
Confidence 345555555 443 33332 245555555555555555222234455555555555555554 444444332 4555
Q ss_pred EEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccce
Q 011015 211 YLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVE 290 (495)
Q Consensus 211 ~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 290 (495)
+|++++|.+....+..+..+++|+.|++..|..... .... ..+..+++|+.
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~----------------------------~~~~~l~~L~~ 175 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIEN----------------------------GAFQGMKKLSY 175 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-GBCT----------------------------TGGGGCTTCCE
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-CcCh----------------------------hhccCCCCcCE
Confidence 555555544333333345555555555544332210 0000 11233344444
Q ss_pred EEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCc
Q 011015 291 LGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPS 369 (495)
Q Consensus 291 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~ 369 (495)
|+++.|.++. ++..+ .++|++|++++|.... +++.++..+++|+.|++++|.+.+..+. +..+++
T Consensus 176 L~l~~n~l~~----------l~~~~--~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 176 IRIADTNITT----------IPQGL--PPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp EECCSSCCCS----------CCSSC--CTTCSEEECTTSCCCE--ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred EECCCCcccc----------CCccc--cccCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 5544444221 11111 1455556665555544 3345555566666666666655544432 555566
Q ss_pred cceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccc-cccccCcccceeeecCCcCcc
Q 011015 370 LEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIK-GEIIIMPRLSSLSIDGCPKLK 448 (495)
Q Consensus 370 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~-~~~~~~~~L~~L~l~~c~~~~ 448 (495)
|++|++++|. ++.++.. +..+++|+.|++++|. ++.++...-.+ ......+.|+.|++++|+...
T Consensus 242 L~~L~L~~N~-l~~lp~~------------l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 242 LRELHLNNNK-LVKVPGG------------LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCEEECCSSC-CSSCCTT------------TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCEEECCCCc-CccCChh------------hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccc
Confidence 6666665443 2111111 1245666666655554 44433110000 001124667777777776543
Q ss_pred --CCCcCCCCCCCccEEEEeCCc
Q 011015 449 --ALPDHLLQKTTLQKLWIWGCP 469 (495)
Q Consensus 449 --~l~~~~~~l~~L~~L~l~~~~ 469 (495)
..|..+..+++++.+++++|+
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC----
T ss_pred cccCccccccccceeEEEecccC
Confidence 234556667788888877763
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.4e-23 Score=199.34 Aligned_cols=295 Identities=15% Similarity=0.105 Sum_probs=213.3
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~ 157 (495)
.++.+++.++.+..+|..+ .+.+++|++++|.+ ....+..|..+++|++|+++ ++. +..+ |..+..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~------~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL------PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILI-NNK---ISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC------CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECC-SSC---CCCBCTTTTTT
T ss_pred CCeEEEecCCCccccCccC------CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECC-CCc---CCeeCHHHhcC
Confidence 4566777777777666543 46889999999984 44445568899999999999 666 5555 788999
Q ss_pred cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCccccc--cccccccCccccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLR--YLPVGIGELISLR 234 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~--~~~~~i~~l~~L~ 234 (495)
+++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..+..+++|+.|++++|.+.. ..+..+..+++|+
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 9999999999999 778887654 799999999998 55554 458899999999999997643 5566788889999
Q ss_pred ccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhc
Q 011015 235 EVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEA 314 (495)
Q Consensus 235 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 314 (495)
.|++..+.... + +. .+ .++|+.|++++|.++. ..+..
T Consensus 175 ~L~l~~n~l~~--------l-----------------~~-------~~--~~~L~~L~l~~n~l~~---------~~~~~ 211 (330)
T 1xku_A 175 YIRIADTNITT--------I-----------------PQ-------GL--PPSLTELHLDGNKITK---------VDAAS 211 (330)
T ss_dssp EEECCSSCCCS--------C-----------------CS-------SC--CTTCSEEECTTSCCCE---------ECTGG
T ss_pred EEECCCCcccc--------C-----------------Cc-------cc--cccCCEEECCCCcCCc---------cCHHH
Confidence 99887665432 0 00 00 1568888888876431 12345
Q ss_pred CCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCC
Q 011015 315 LGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESD 394 (495)
Q Consensus 315 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 394 (495)
+..+++|+.|++++|.... +++.++..+++|+.|++++|.+......+..+++|++|+++++. ++.++.......
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-- 286 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-- 286 (330)
T ss_dssp GTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS--
T ss_pred hcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc--
Confidence 6778899999999998877 65668889999999999999877433348899999999999775 443333222110
Q ss_pred CCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCc
Q 011015 395 TDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCP 445 (495)
Q Consensus 395 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 445 (495)
......+.|+.|++++++ +..+. ..|..+..+++|+.+++++|+
T Consensus 287 ---~~~~~~~~l~~l~l~~N~-~~~~~---i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 287 ---GYNTKKASYSGVSLFSNP-VQYWE---IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---SCCTTSCCCSEEECCSSS-SCGGG---SCGGGGTTCCCGGGEEC----
T ss_pred ---ccccccccccceEeecCc-ccccc---cCccccccccceeEEEecccC
Confidence 001135789999988877 54443 234577789999999999874
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.9e-23 Score=216.72 Aligned_cols=352 Identities=18% Similarity=0.087 Sum_probs=227.5
Q ss_pred EeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceE
Q 011015 86 TVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYL 164 (495)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L 164 (495)
.+..++.+|..+. +.+++|+|++|.+ ....+..|..+++|++|+|+ +|. +..++ ..|.++++|++|
T Consensus 39 ~~~~l~~vP~~lp------~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls-~N~---i~~i~~~~f~~L~~L~~L 105 (635)
T 4g8a_A 39 MELNFYKIPDNLP------FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLS-RCE---IQTIEDGAYQSLSHLSTL 105 (635)
T ss_dssp TTSCCSSCCSSSC------TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECT-TCC---CCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCCCCC------cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECC-CCc---CCCcChhHhcCCCCCCEE
Confidence 3445566776553 3789999999984 45446679999999999999 777 77774 569999999999
Q ss_pred ecCCCCcccccc-hhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccccc-cccccccCcccccccCeEEe
Q 011015 165 NLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLR-YLPVGIGELISLREVTKFVV 241 (495)
Q Consensus 165 ~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~-~~~~~i~~l~~L~~L~l~~~ 241 (495)
+|++|. +..+| ..+.++++|++|++++|. +..+|. .++.+++|++|++++|.+.. ..|..++.+++|++|++..|
T Consensus 106 ~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 106 ILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp ECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999999 67676 458899999999999998 666665 48999999999999997654 45777899999999999887
Q ss_pred cCccCCccCccchhccc-------------------------------------------------ccCCcee--ecc--
Q 011015 242 GGGYDRACSLGSLKKLN-------------------------------------------------LLRKCSI--RGL-- 268 (495)
Q Consensus 242 ~~~~~~~~~~~~l~~l~-------------------------------------------------~L~~l~~--~~~-- 268 (495)
.+.......+..+..++ .++...+ ...
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 66431111111111110 0000000 000
Q ss_pred ----CCCCC-----------------------------hhhh--------------Hhhcc-------------------
Q 011015 269 ----GGVSD-----------------------------AGEV--------------RRAEL------------------- 282 (495)
Q Consensus 269 ----~~~~~-----------------------------~~~~--------------~~~~~------------------- 282 (495)
..... .... ....+
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSC
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCc
Confidence 00000 0000 00000
Q ss_pred ------------------------ccccccceEEEEEecCCCCCCccc----------------hhHHHhhcCCCCCCcc
Q 011015 283 ------------------------EKQKYLVELGLYFDQAGRRENEED----------------EDERLLEALGPPPNLK 322 (495)
Q Consensus 283 ------------------------~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~L~ 322 (495)
..+++|+.++++.|.+........ ........+..+++|+
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCC
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccccc
Confidence 123445555555544321000000 0001122234456677
Q ss_pred eEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccc
Q 011015 323 KLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVI 401 (495)
Q Consensus 323 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (495)
.+++.++..... .+...+..+++++.++++.|.+....+. +..++.|++|+++++.....+.... ..
T Consensus 424 ~l~l~~~~~~~~-~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~-----------~~ 491 (635)
T 4g8a_A 424 HLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-----------FT 491 (635)
T ss_dssp EEECTTSEEEST-TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-----------CT
T ss_pred chhhhhcccccc-ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh-----------hh
Confidence 777666544431 2234566778888888888877766655 7788899999998776443221111 23
Q ss_pred cCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 402 AFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 402 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
.+++|+.|++++|. ++. ..|..+..+++|++|+|++|....-.|..+..+++|++|++++|+.
T Consensus 492 ~l~~L~~L~Ls~N~-L~~-----l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQ-LEQ-----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp TCTTCCEEECTTSC-CCE-----ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hccccCEEECCCCc-cCC-----cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 68999999987775 443 3456788999999999999876554556688899999999999975
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=4.2e-26 Score=227.39 Aligned_cols=370 Identities=16% Similarity=0.059 Sum_probs=245.6
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCccc-ccchHHhhcCCeeeEEEccCccCcccccc-cccc-c
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSS-KVLPQLFDKLTCLRALTLETHCCFDFIQK-IPKN-I 155 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~-~ 155 (495)
+++++++.++.+...+ ....+..+++|++|++++|.+.... ..++..+..+++|++|+++ ++. +.. .+.. .
T Consensus 4 ~l~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~---l~~~~~~~l~ 77 (461)
T 1z7x_W 4 DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNE---LGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCC---CHHHHHHHHH
T ss_pred cceehhhhhcccCchh--HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-CCc---CChHHHHHHH
Confidence 7899999999887432 2222345999999999999853221 2467778889999999999 665 433 2322 2
Q ss_pred cCcC----CcceEecCCCCccc----ccchhhhccccCcEeecCCCcCCcccchhhc-----cCCcccEEecCCcccccc
Q 011015 156 EKLI----HLKYLNLCGQTEIE----KLPETLCELYNLECLNVSGCWNLRELPRGIG-----KLRKLMYLYNEGTSCLRY 222 (495)
Q Consensus 156 ~~l~----~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~-----~l~~L~~L~L~~~~~~~~ 222 (495)
..++ +|++|++++|.+.. .++..+..+++|++|++++|......+..+. ..++|++|++++|.+...
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 3454 79999999998442 5677888999999999999983322232222 356899999999976553
Q ss_pred ----ccccccCcccccccCeEEecCccCCccCccchh-----cccccCCceeeccCCCCChhhhHhhccccccccceEEE
Q 011015 223 ----LPVGIGELISLREVTKFVVGGGYDRACSLGSLK-----KLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGL 293 (495)
Q Consensus 223 ----~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 293 (495)
++..+..+++|++|++..|.+.. ..+..+. ..++|+.|.+..+.............+..+++|++|++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~---~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINE---AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHH---HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcch---HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 35556778999999999887653 1122221 24588888888775544433344556678899999999
Q ss_pred EEecCCCCCCccchhHHHhhc-CCCCCCcceEEEeeecCcCCC---CCCchhhhccccceeeecCccCCCCCCC------
Q 011015 294 YFDQAGRRENEEDEDERLLEA-LGPPPNLKKLEIYDYRGRRNV---VPINWIMSLTNLRDLSLSKWRNCEHLPP------ 363 (495)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~------ 363 (495)
++|.++. .....+... ...+++|++|++++|...... + +..+..+++|+.|++++|.+.+..+.
T Consensus 235 s~n~l~~-----~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 235 GSNKLGD-----VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cCCcCCh-----HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 9987421 111122232 335789999999998765411 2 34556789999999999976542221
Q ss_pred CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccc-cCcccceeeec
Q 011015 364 LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEII-IMPRLSSLSID 442 (495)
Q Consensus 364 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~-~~~~L~~L~l~ 442 (495)
....++|++|++++|. ++....... ...+..+++|+.|++++|. +++.... .+...+. ..++|++|+++
T Consensus 309 ~~~~~~L~~L~L~~n~-l~~~~~~~l-------~~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCS-FTAACCSHF-------SSVLAQNRFLLELQISNNR-LEDAGVR-ELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp TSTTCCCCEEECTTSC-CBGGGHHHH-------HHHHHHCSSCCEEECCSSB-CHHHHHH-HHHHHHTSTTCCCCEEECT
T ss_pred ccCCccceeeEcCCCC-CchHHHHHH-------HHHHhhCCCccEEEccCCc-cccccHH-HHHHHHcCCCCceEEEECC
Confidence 2234799999999775 211100000 0112357899999988875 5543221 1111121 26799999999
Q ss_pred CCcCcc----CCCcCCCCCCCccEEEEeCCcchhH
Q 011015 443 GCPKLK----ALPDHLLQKTTLQKLWIWGCPILEE 473 (495)
Q Consensus 443 ~c~~~~----~l~~~~~~l~~L~~L~l~~~~~l~~ 473 (495)
+|.... .+|..+..+++|++|++++|+.-..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 987654 5777777789999999999976433
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.2e-23 Score=205.81 Aligned_cols=114 Identities=22% Similarity=0.138 Sum_probs=59.4
Q ss_pred CeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccE
Q 011015 132 TCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMY 211 (495)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 211 (495)
++|++|+++ ++. +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|. +..+| .++.+++|++
T Consensus 91 ~~L~~L~l~-~n~---l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVAS-CNS---LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECC-SSC---CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCE
T ss_pred CCCCEEEcc-CCc---CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCE
Confidence 345555555 433 3334322 2455555555555 3333321 1467777777776 44566 4677777777
Q ss_pred EecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeec
Q 011015 212 LYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRG 267 (495)
Q Consensus 212 L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~ 267 (495)
|++++|.+. .+|..+ .+|+.|++..|.... +..+..+++|+.+.+..
T Consensus 158 L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-----l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-----LPELQNLPFLTAIYADN 204 (454)
T ss_dssp EECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-----CCCCTTCTTCCEEECCS
T ss_pred EECCCCcCc-ccCCCc---ccccEEECcCCcCCc-----CccccCCCCCCEEECCC
Confidence 777777443 344332 356666666655443 12344555555555443
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.3e-23 Score=195.25 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=147.5
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
.++++.|++++|.+. . +|..+..+++|++|+++ ++. +..+|..++.+++|++|++++|. +..+|..++.++
T Consensus 80 ~~~l~~L~L~~n~l~---~-lp~~l~~l~~L~~L~L~-~n~---l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---Q-FPDQAFRLSHLQHMTID-AAG---LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCS---S-CCSCGGGGTTCSEEEEE-SSC---CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred ccceeEEEccCCCch---h-cChhhhhCCCCCEEECC-CCC---ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 577888888888743 2 55556778888888888 666 55777778888888888888887 557887788888
Q ss_pred cCcEeecCCCcCCcccchhhcc---------CCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccch
Q 011015 184 NLECLNVSGCWNLRELPRGIGK---------LRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSL 254 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~---------l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 254 (495)
+|++|++++|...+.+|..++. +++|++|++++|.+. .+|..++.+++|++|++..|.+.. ..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~----l~--- 222 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA----LG--- 222 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC----CC---
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc----Cc---
Confidence 8888888887767777766554 777777777777443 666666666667766666554331 00
Q ss_pred hcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCC
Q 011015 255 KKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRN 334 (495)
Q Consensus 255 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 334 (495)
..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|....
T Consensus 223 -------------------------~~l~~l~~L~~L~Ls~n~~~---------~~~p~~~~~l~~L~~L~L~~n~~~~- 267 (328)
T 4fcg_A 223 -------------------------PAIHHLPKLEELDLRGCTAL---------RNYPPIFGGRAPLKRLILKDCSNLL- 267 (328)
T ss_dssp -------------------------GGGGGCTTCCEEECTTCTTC---------CBCCCCTTCCCCCCEEECTTCTTCC-
T ss_pred -------------------------hhhccCCCCCEEECcCCcch---------hhhHHHhcCCCCCCEEECCCCCchh-
Confidence 11334455666666655422 1233445566677777777665544
Q ss_pred CCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeecc
Q 011015 335 VVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIE 376 (495)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~ 376 (495)
.+ |.++..+++|+.|++++|.+.+.+|. ++.+++|+.+.+.
T Consensus 268 ~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp BC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 13 56667777777777777777777666 6777777777665
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.8e-22 Score=189.61 Aligned_cols=267 Identities=15% Similarity=0.107 Sum_probs=156.7
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhcccc
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCELYN 184 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 184 (495)
+++.++++++.+.. +|..+ .++|++|+++ ++. +..+ +..+.++++|++|++++|.+.+..|..++.+++
T Consensus 34 ~l~~l~~~~~~l~~----ip~~~--~~~l~~L~l~-~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA----VPKEI--SPDTTLLDLQ-NND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSS----CCSCC--CTTCCEEECC-SSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCccc----cCCCC--CCCCeEEECC-CCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 45556655555321 22211 2455556665 444 3333 334555566666666665533333445555566
Q ss_pred CcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCce
Q 011015 185 LECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCS 264 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~ 264 (495)
|++|++++|. +..+|..+. ++|++|++++|.+....+..+..+++|+
T Consensus 104 L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~------------------------------ 150 (332)
T 2ft3_A 104 LQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN------------------------------ 150 (332)
T ss_dssp CCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC------------------------------
T ss_pred CCEEECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC------------------------------
Confidence 6666666555 445554433 5555555555543322222244444444
Q ss_pred eeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhc
Q 011015 265 IRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSL 344 (495)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 344 (495)
.|++++|.++. ....+..+..+ +|+.|++++|.... + |..+ .
T Consensus 151 -------------------------~L~l~~n~l~~-------~~~~~~~~~~l-~L~~L~l~~n~l~~--l-~~~~--~ 192 (332)
T 2ft3_A 151 -------------------------CIEMGGNPLEN-------SGFEPGAFDGL-KLNYLRISEAKLTG--I-PKDL--P 192 (332)
T ss_dssp -------------------------EEECCSCCCBG-------GGSCTTSSCSC-CCSCCBCCSSBCSS--C-CSSS--C
T ss_pred -------------------------EEECCCCcccc-------CCCCcccccCC-ccCEEECcCCCCCc--c-Cccc--c
Confidence 44444443210 01112223333 67777777777666 6 3333 2
Q ss_pred cccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccc
Q 011015 345 TNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFG 423 (495)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 423 (495)
++|+.|++++|.+.+..+. +..+++|++|+++++. ++.+... .+..+++|+.|++++|. ++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N~-l~----- 254 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENG-----------SLSFLPTLRELHLDNNK-LS----- 254 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTT-----------GGGGCTTCCEEECCSSC-CC-----
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChh-----------HhhCCCCCCEEECCCCc-Ce-----
Confidence 7999999999988876654 8999999999999764 2222111 13378999999988876 54
Q ss_pred cccccccccCcccceeeecCCcCccCCCcCCCC------CCCccEEEEeCCcchh
Q 011015 424 TAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQ------KTTLQKLWIWGCPILE 472 (495)
Q Consensus 424 ~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~------l~~L~~L~l~~~~~l~ 472 (495)
.+|..+..+++|++|++++|......+..+.. .++|+.|++++||...
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 45667889999999999998754433333322 4789999999999753
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=5.6e-24 Score=218.93 Aligned_cols=354 Identities=14% Similarity=0.074 Sum_probs=174.7
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCC-ccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc----cc
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRR-LRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK----IP 152 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----l~ 152 (495)
.++.|++.++.+... ...+.. .++. |++|++.+|... ....++.....+++|++|+++ +|.. .+. ++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~---~~~~~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~-~~~~--~~~~~~~l~ 185 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAK---ARADDLETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLME-ESSF--SEKDGKWLH 185 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHH---HHGGGCCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECT-TCEE--ECCCSHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHH---hccccCcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECc-cccc--cCcchhHHH
Confidence 677777777755421 111211 1333 777777776511 111234444567777777777 4431 111 22
Q ss_pred ccccCcCCcceEecCCCCcc----cccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccc---------
Q 011015 153 KNIEKLIHLKYLNLCGQTEI----EKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSC--------- 219 (495)
Q Consensus 153 ~~~~~l~~L~~L~l~~~~~~----~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~--------- 219 (495)
.....+++|++|++++|... ..++..+..+++|++|++++|. +..+|..+..+++|+.|+++....
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 33445677777777776632 2344445566777777777765 445665666666666666653211
Q ss_pred -----------------cccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhcc
Q 011015 220 -----------------LRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAEL 282 (495)
Q Consensus 220 -----------------~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~ 282 (495)
...+|..+..+++|++|++..|.... ......+..+++|+.|.+... ..........
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~----~~~~~l~~~~ 338 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET--EDHCTLIQKCPNLEVLETRNV----IGDRGLEVLA 338 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH--HHHHHHHTTCTTCCEEEEEGG----GHHHHHHHHH
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH--HHHHHHHHhCcCCCEEeccCc----cCHHHHHHHH
Confidence 12233333444455555554443221 111111234444444444411 1111122223
Q ss_pred ccccccceEEEEE-----------ecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhh-hcccccee
Q 011015 283 EKQKYLVELGLYF-----------DQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIM-SLTNLRDL 350 (495)
Q Consensus 283 ~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L 350 (495)
..+++|++|+++. +.+ ...........+++|++|.++.+..... . +..+. .+++|+.|
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~--------~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~-~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLV--------SQRGLIALAQGCQELEYMAVYVSDITNE-S-LESIGTYLKNLCDF 408 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCC--------CHHHHHHHHHHCTTCSEEEEEESCCCHH-H-HHHHHHHCCSCCEE
T ss_pred HhCCCCCEEEeecCccccccccccCcc--------CHHHHHHHHhhCccCeEEEeecCCccHH-H-HHHHHhhCCCCcEE
Confidence 3455566666652 221 1112222223355666666644443321 1 12232 35666666
Q ss_pred eecC---ccCCCCCC------C-CCCCCccceeecccccc-ceEeCccccCCCCCCCCCccccCCccceeeecccccccc
Q 011015 351 SLSK---WRNCEHLP------P-LGKLPSLEYLVIELMNS-VKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEE 419 (495)
Q Consensus 351 ~l~~---~~~~~~~~------~-~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 419 (495)
++++ |...+..| . +.++++|++|+++.|.+ ++. ...... ...+++|+.|++++|. +++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~-------~~~~~~L~~L~L~~n~-l~~ 477 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYI-------GQYSPNVRWMLLGYVG-ESD 477 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHH-------HHSCTTCCEEEECSCC-SSH
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH---HHHHHH-------HHhCccceEeeccCCC-CCH
Confidence 6652 21222211 1 33466677776655442 110 000000 0136778888877665 433
Q ss_pred cccccccccccccCcccceeeecCCcCccC-CCcCCCCCCCccEEEEeCCcch
Q 011015 420 WDFGTAIKGEIIIMPRLSSLSIDGCPKLKA-LPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 420 ~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~-l~~~~~~l~~L~~L~l~~~~~l 471 (495)
.. ++..+..+++|++|+|++|+.... ++..+..+++|++|++++|+..
T Consensus 478 ~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 478 EG----LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HH----HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HH----HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 22 233445788999999999884332 4444556889999999999843
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=191.86 Aligned_cols=279 Identities=17% Similarity=0.152 Sum_probs=174.6
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccc-cccCcCCcceEecCCCCcccccchhhhcc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPK-NIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
|+.....+.+++.+. . +|..+ .++|++|+++ ++. +..++. .+..+++|++|++++|.+.+..|..++.+
T Consensus 30 C~~~~~c~~~~~~l~---~-iP~~~--~~~L~~L~l~-~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLN---S-IPSGL--TEAVKSLDLS-NNR---ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCS---S-CCTTC--CTTCCEEECT-TSC---CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCeEeeCCCCCcc---c-ccccc--cccCcEEECC-CCc---CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 666666777766643 2 34322 2467888887 555 555543 57778888888888887333344567778
Q ss_pred ccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccc--cccCcccccccCeEEecCccCCccCccchhcccc
Q 011015 183 YNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPV--GIGELISLREVTKFVVGGGYDRACSLGSLKKLNL 259 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~--~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 259 (495)
++|++|++++|. +..+|.. ++.+++|++|++++|.+. .+|. .+..+++|+.|++..|.... ..
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~--~~---------- 165 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT--KI---------- 165 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC--EE----------
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc--cc----------
Confidence 888888888887 5566655 677888888888887543 4444 56777777777777653211 00
Q ss_pred cCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCc
Q 011015 260 LRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPIN 339 (495)
Q Consensus 260 L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 339 (495)
....+..+++|+.|+++.|.++. ..+..+..+++|++|++++|.... ++..
T Consensus 166 ------------------~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~l~~--~~~~ 216 (353)
T 2z80_A 166 ------------------QRKDFAGLTFLEELEIDASDLQS---------YEPKSLKSIQNVSHLILHMKQHIL--LLEI 216 (353)
T ss_dssp ------------------CTTTTTTCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSCSTT--HHHH
T ss_pred ------------------CHHHccCCCCCCEEECCCCCcCc---------cCHHHHhccccCCeecCCCCcccc--chhh
Confidence 00223445677777777776421 124456667778888888877655 5333
Q ss_pred hhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccc
Q 011015 340 WIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELE 418 (495)
Q Consensus 340 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 418 (495)
.+..+++|+.|++++|.+.+..+. +.. ....+.++.++++++. +.
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------------------~~~~~~l~~l~L~~~~-l~ 262 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELST---------------------------------GETNSLIKKFTFRNVK-IT 262 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC---------------------------------------CCCCCCEEEEESCB-CC
T ss_pred hhhhcccccEEECCCCcccccccccccc---------------------------------ccccchhhcccccccc-cc
Confidence 455678888888888766543221 100 0023445555555443 44
Q ss_pred ccccccccccccccCcccceeeecCCcCccCCCcCC-CCCCCccEEEEeCCcch
Q 011015 419 EWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHL-LQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 419 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~-~~l~~L~~L~l~~~~~l 471 (495)
+..+ ..+|..+..+++|++|++++|.. +.+|..+ ..+++|++|++++|+..
T Consensus 263 ~~~l-~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 263 DESL-FQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHH-HHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Ccch-hhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCcc
Confidence 4333 23556677888899999988764 4777664 78889999999988753
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=2.6e-25 Score=221.62 Aligned_cols=369 Identities=14% Similarity=0.063 Sum_probs=239.4
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCCccEEEEcCCccCcccccchHHhhcCC----eeeEEEccCccCccccc----
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLT----CLRALTLETHCCFDFIQ---- 149 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~----~L~~L~l~~~~~~~~~~---- 149 (495)
+++++++.++.+... ...+...+..+++|++|++++|.+.. ..+...+..++ +|++|+++ +|. +.
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~-~n~---i~~~~~ 102 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQ-NCC---LTGAGC 102 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECT-TSC---CBGGGH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEcc-CCC---CCHHHH
Confidence 788999999988742 12333444458999999999998421 11233334566 79999999 666 43
Q ss_pred -cccccccCcCCcceEecCCCCcccccchhhhc-----cccCcEeecCCCcCCcc----cchhhccCCcccEEecCCccc
Q 011015 150 -KIPKNIEKLIHLKYLNLCGQTEIEKLPETLCE-----LYNLECLNVSGCWNLRE----LPRGIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 150 -~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-----l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~ 219 (495)
.++..+..+++|++|++++|.+....+..+.. .++|++|++++|..... ++..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 45778899999999999999943333333332 45799999999984332 456677889999999999976
Q ss_pred ccccccccc-----CcccccccCeEEecCccCCcc-CccchhcccccCCceeeccCCCCChhh-hHhhccccccccceEE
Q 011015 220 LRYLPVGIG-----ELISLREVTKFVVGGGYDRAC-SLGSLKKLNLLRKCSIRGLGGVSDAGE-VRRAELEKQKYLVELG 292 (495)
Q Consensus 220 ~~~~~~~i~-----~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~~l~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~ 292 (495)
....+..+. ..++|++|++..|........ ....+..+++|+.|++........... ........+++|+.|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 544333332 356899999988876531111 233456778888888876532111111 1122234578999999
Q ss_pred EEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhh-----ccccceeeecCccCCCC----CCC
Q 011015 293 LYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMS-----LTNLRDLSLSKWRNCEH----LPP 363 (495)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~~~ 363 (495)
+++|.++. .....+...+..+++|++|++++|.+.. ..+..+.. .++|+.|++++|.+... ++.
T Consensus 263 L~~n~l~~-----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 263 IWECGITA-----KGCGDLCRVLRAKESLKELSLAGNELGD--EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CTTSCCCH-----HHHHHHHHHHHHCTTCCEEECTTCCCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CcCCCCCH-----HHHHHHHHHHhhCCCcceEECCCCCCch--HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 99998542 2222356666778999999999997654 21223332 26999999999987654 222
Q ss_pred -CCCCCccceeeccccccceEeCccccCCCCCCCCCcc-ccCCccceeeecccccccccccccccccccccCcccceeee
Q 011015 364 -LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSV-IAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSI 441 (495)
Q Consensus 364 -~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l 441 (495)
+..+++|++|++++|. ++......... .+ ...++|+.|++++|. ++.... ..+|..+..+++|++|++
T Consensus 336 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n~-i~~~~~-~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNR-LEDAGVRELCQ-------GLGQPGSVLRVLWLADCD-VSDSSC-SSLAATLLANHSLRELDL 405 (461)
T ss_dssp HHHHCSSCCEEECCSSB-CHHHHHHHHHH-------HHTSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHHCCCCCEEEC
T ss_pred HHhhCCCccEEEccCCc-cccccHHHHHH-------HHcCCCCceEEEECCCCC-CChhhH-HHHHHHHHhCCCccEEEC
Confidence 5677999999999774 32211110000 00 026799999988886 543221 245667778999999999
Q ss_pred cCCcCccC----CCcCC-CCCCCccEEEEeCCcc
Q 011015 442 DGCPKLKA----LPDHL-LQKTTLQKLWIWGCPI 470 (495)
Q Consensus 442 ~~c~~~~~----l~~~~-~~l~~L~~L~l~~~~~ 470 (495)
++|+.... +...+ ....+|+.|++.++..
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 99976543 11111 1234566666665543
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=2.3e-23 Score=214.29 Aligned_cols=361 Identities=18% Similarity=0.085 Sum_probs=205.7
Q ss_pred ceEEEEEEeccCC----Ccc--------hhhhcccccCCCccEEEEcCCccCcccccchHHhhc-CCe-eeEEEccCccC
Q 011015 79 KVLHLMLTVDVGT----SVP--------IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDK-LTC-LRALTLETHCC 144 (495)
Q Consensus 79 ~~~~l~l~~~~~~----~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~-l~~-L~~L~l~~~~~ 144 (495)
.++++++.++... .+| ..+......+++|++|++++|.+ .+..+..+.. ++. |++|+++ +|.
T Consensus 74 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i---~~~~~~~l~~~~~~~L~~L~L~-~~~ 149 (592)
T 3ogk_B 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV---SDLDLDRLAKARADDLETLKLD-KCS 149 (592)
T ss_dssp TCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC---CHHHHHHHHHHHGGGCCEEEEE-SCE
T ss_pred CCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEe---cHHHHHHHHHhccccCcEEECc-CCC
Confidence 6888888774221 011 11222222599999999999973 3333444544 444 9999999 554
Q ss_pred ccccccccccccCcCCcceEecCCCCcccc----cchhhhccccCcEeecCCCcCC----cccchhhccCCcccEEecCC
Q 011015 145 FDFIQKIPKNIEKLIHLKYLNLCGQTEIEK----LPETLCELYNLECLNVSGCWNL----RELPRGIGKLRKLMYLYNEG 216 (495)
Q Consensus 145 ~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~----~~lp~~l~~l~~L~~L~L~~ 216 (495)
......++.....+++|++|++++|.+.+. ++.....+++|++|++++|... ..++..+..+++|+.|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 111122344456889999999999984433 4455678999999999999843 24555667899999999999
Q ss_pred ccccccccccccCcccccccCeEEecCccCCccCccchh-----------------------cccccCCceeeccCCCCC
Q 011015 217 TSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLK-----------------------KLNLLRKCSIRGLGGVSD 273 (495)
Q Consensus 217 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----------------------~l~~L~~l~~~~~~~~~~ 273 (495)
|... .+|..+..+++|++|.+...............+. .+++|+.|++..+. ..
T Consensus 230 ~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~- 306 (592)
T 3ogk_B 230 FEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LE- 306 (592)
T ss_dssp CBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CC-
T ss_pred ccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CC-
Confidence 8654 4667778888888888764322110011122223 34444444444433 11
Q ss_pred hhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEee----------ecCcC-CCCCCchhh
Q 011015 274 AGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYD----------YRGRR-NVVPINWIM 342 (495)
Q Consensus 274 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~-~~~~~~~~~ 342 (495)
.......+..+++|+.|+++ +. .....+......+++|++|++++ +...+ ..+ +....
T Consensus 307 -~~~~~~~~~~~~~L~~L~L~-~~--------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~-~~l~~ 375 (592)
T 3ogk_B 307 -TEDHCTLIQKCPNLEVLETR-NV--------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-IALAQ 375 (592)
T ss_dssp -HHHHHHHHTTCTTCCEEEEE-GG--------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH-HHHHH
T ss_pred -HHHHHHHHHhCcCCCEEecc-Cc--------cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH-HHHHh
Confidence 11111223445555555555 22 12222222233455666666662 22211 001 11223
Q ss_pred hccccceeeecCccCCCCCCC-CC-CCCccceeeccccc---cceEeCcc--ccCCCCCCCCCccccCCccceeeecccc
Q 011015 343 SLTNLRDLSLSKWRNCEHLPP-LG-KLPSLEYLVIELMN---SVKRVGNE--FLGVESDTDGSSVIAFPKLKLLDFYIMK 415 (495)
Q Consensus 343 ~~~~L~~L~l~~~~~~~~~~~-~~-~l~~L~~L~l~~~~---~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 415 (495)
.+++|++|++..+.+.+..+. ++ .+++|++|++++|. .++..+.. +. ....++++|+.|++++|.
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~--------~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR--------SLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH--------HHHHHCTTCCEEEEECCG
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH--------HHHHhCCCCCEEEEecCC
Confidence 466666666654444432222 22 26677777776432 22211000 00 002258889999987765
Q ss_pred c-cccccccccccccc-ccCcccceeeecCCcCcc-CCCcCCCCCCCccEEEEeCCcc
Q 011015 416 E-LEEWDFGTAIKGEI-IIMPRLSSLSIDGCPKLK-ALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 416 ~-l~~~~~~~~l~~~~-~~~~~L~~L~l~~c~~~~-~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
. ++...+ ..+ ..+++|++|++++|.... .++..+..+++|++|++++|+.
T Consensus 448 ~~l~~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 448 GGLTDLGL-----SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp GGCCHHHH-----HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CCccHHHH-----HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 3 222221 222 248899999999987554 3455567889999999999994
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1e-21 Score=184.41 Aligned_cols=244 Identities=21% Similarity=0.129 Sum_probs=129.5
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCc
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHL 161 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L 161 (495)
.++..++.++.+|..+ .++|++|++++|.+ ....+..|..+++|++|+++ ++........+..+..+++|
T Consensus 11 ~l~c~~~~l~~ip~~~------~~~l~~L~L~~n~l---~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI------PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp EEECCSSCCSSCCSCC------CTTCCEEECCSSCC---CCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHHHHSCSCC
T ss_pred EEEcCCCCcccCCCCC------CCCCCEEECCCCcc---CccCHhHhhccccCCEEECC-CCccCcccCccccccccccc
Confidence 3444445555444432 34666777777663 23223345666777777776 44411112224445566777
Q ss_pred ceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch--hhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 162 KYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
++|++++|. +..+|..+..+++|++|++++|. +..++. .+..+++|++|++++|.+....+..+..+++|+.|++.
T Consensus 81 ~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 81 KYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 777777776 55566656666777777777766 444442 46666777777777665554455555555666665554
Q ss_pred EecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCC
Q 011015 240 VVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPP 319 (495)
Q Consensus 240 ~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (495)
.|.... . .....+..+++|+.|++++|.++. ..+..+..++
T Consensus 159 ~n~l~~--~----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~ 199 (306)
T 2z66_A 159 GNSFQE--N----------------------------FLPDIFTELRNLTFLDLSQCQLEQ---------LSPTAFNSLS 199 (306)
T ss_dssp TCEEGG--G----------------------------EECSCCTTCTTCCEEECTTSCCCE---------ECTTTTTTCT
T ss_pred CCcccc--c----------------------------cchhHHhhCcCCCEEECCCCCcCC---------cCHHHhcCCC
Confidence 433221 0 000112233445555555554211 1123344455
Q ss_pred CcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCC-ccceeecccc
Q 011015 320 NLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLP-SLEYLVIELM 378 (495)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~-~L~~L~l~~~ 378 (495)
+|+.|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +..++ +|++|+++++
T Consensus 200 ~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 200 SLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 66666666665555 4344555666666666666665554443 45553 5666666533
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=8.1e-22 Score=183.09 Aligned_cols=225 Identities=18% Similarity=0.146 Sum_probs=140.8
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcC
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLI 159 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~ 159 (495)
+.++..++.+..+|..+ .++|++|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..+..++
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~l~~n~i---~~~~~~~~~~~~~L~~L~l~-~n~---l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI------PAASQRIFLHGNRI---SHVPAASFRACRNLTILWLH-SNV---LARIDAAAFTGLA 80 (285)
T ss_dssp CEEECCSSCCSSCCTTC------CTTCSEEECTTSCC---CEECTTTTTTCTTCCEEECC-SSC---CCEECTTTTTTCT
T ss_pred eEEEcCcCCcccCCcCC------CCCceEEEeeCCcC---CccCHHHcccCCCCCEEECC-CCc---cceeCHhhcCCcc
Confidence 45556666666555432 45788888888873 34344567788888888888 555 4444 66678888
Q ss_pred CcceEecCCCCccccc-chhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 160 HLKYLNLCGQTEIEKL-PETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
+|++|++++|..++.+ |..+..+++|++|++++|......|..+..+++|++|++++|.+....+..++.+++|+.|++
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 8888888888634444 566778888888888888733333556777888888888888654444444667777777766
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP 318 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (495)
.+|.+... ....+..+++|+.|++++|.++. ..+..+..+
T Consensus 161 ~~n~l~~~-------------------------------~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~l 200 (285)
T 1ozn_A 161 HGNRISSV-------------------------------PERAFRGLHSLDRLLLHQNRVAH---------VHPHAFRDL 200 (285)
T ss_dssp CSSCCCEE-------------------------------CTTTTTTCTTCCEEECCSSCCCE---------ECTTTTTTC
T ss_pred CCCccccc-------------------------------CHHHhcCccccCEEECCCCcccc---------cCHhHccCc
Confidence 65543210 00113344566666666665321 123344556
Q ss_pred CCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEH 360 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 360 (495)
++|+.|++++|.+.. +++.++..+++|+.|++++|.+..+
T Consensus 201 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 201 GRLMTLYLFANNLSA--LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCCEEECCSSCCSC--CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccccEeeCCCCcCCc--CCHHHcccCcccCEEeccCCCccCC
Confidence 666666666666655 5345566666666666666655443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=3.2e-21 Score=190.36 Aligned_cols=314 Identities=16% Similarity=0.080 Sum_probs=202.4
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCee-------------eEEEccCccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCL-------------RALTLETHCCF 145 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L-------------~~L~l~~~~~~ 145 (495)
.++.+.++++.+..+|..+.+ +++|++|++++|. +.+.+|..+..+++| ++|+++ ++.
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~----L~~L~~L~l~~n~---~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~-~~~- 82 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAEN----VKSKTEYYNAWSE---WERNAPPGNGEQREMAVSRLRDCLDRQAHELELN-NLG- 82 (454)
T ss_dssp --------------------------CCHHHHHHHHHH---HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECT-TSC-
T ss_pred cchhhhcccCchhhCChhHhc----ccchhhhhccCCc---ccccCCcccccchhcchhhhhhhhccCCCEEEec-CCc-
Confidence 788999999999778877777 9999999999988 444577777777765 999999 776
Q ss_pred cccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccc
Q 011015 146 DFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPV 225 (495)
Q Consensus 146 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~ 225 (495)
+..+|.. .++|++|++++|. +..+|.. +++|++|++++|. +..+|.. .++|++|++++|.+.. +|
T Consensus 83 --l~~lp~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 83 --LSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp --CSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSS-CC-
T ss_pred --cccCCCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCC-Cc-
Confidence 6666652 4789999999999 5568753 4789999999997 6666532 2789999999997654 77
Q ss_pred cccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCcc
Q 011015 226 GIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEE 305 (495)
Q Consensus 226 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 305 (495)
.++.+++|++|++..|.... .+.. ..+|+.|++........ ..+..+++|+.|++++|.++.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~------~~~L~~L~L~~n~l~~l------~~~~~l~~L~~L~l~~N~l~~----- 209 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL------PPSLEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKK----- 209 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC------CTTCCEEECCSSCCSSC------CCCTTCTTCCEEECCSSCCSS-----
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC------cccccEEECcCCcCCcC------ccccCCCCCCEEECCCCcCCc-----
Confidence 59999999999999887653 1111 23667776665432221 246788999999999988532
Q ss_pred chhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeC
Q 011015 306 DEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVG 385 (495)
Q Consensus 306 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 385 (495)
++. ..++|+.|++++|.... + |. +..+++|+.|++++|.+.+ +|. .+++|++|++++|. ++.++
T Consensus 210 -----l~~---~~~~L~~L~l~~n~l~~--l-p~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 210 -----LPD---LPLSLESIVAGNNILEE--L-PE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSS--C-CC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC-CSCCC
T ss_pred -----CCC---CcCcccEEECcCCcCCc--c-cc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc-ccccC
Confidence 111 13589999999998876 7 43 7799999999999997765 443 34899999998664 22111
Q ss_pred ccccCCCCCCCCCccccCCccceeeecccccccccc----------cccccccccccC-cccceeeecCCcCccCCCcCC
Q 011015 386 NEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWD----------FGTAIKGEIIIM-PRLSSLSIDGCPKLKALPDHL 454 (495)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----------~~~~l~~~~~~~-~~L~~L~l~~c~~~~~l~~~~ 454 (495)
. .+++|+.|++++|. ++.++ +.+.--..+..+ ++|++|++++|.. ..+|..
T Consensus 274 ~---------------~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l-~~lp~~- 335 (454)
T 1jl5_A 274 E---------------LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPAL- 335 (454)
T ss_dssp C---------------CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC-SCCCCC-
T ss_pred c---------------ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcc-cccccc-
Confidence 1 23566677766654 33321 000000011123 4788888888764 446654
Q ss_pred CCCCCccEEEEeCCcc
Q 011015 455 LQKTTLQKLWIWGCPI 470 (495)
Q Consensus 455 ~~l~~L~~L~l~~~~~ 470 (495)
+++|++|++++|..
T Consensus 336 --~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 336 --PPRLERLIASFNHL 349 (454)
T ss_dssp --CTTCCEEECCSSCC
T ss_pred --CCcCCEEECCCCcc
Confidence 57888999988854
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=186.82 Aligned_cols=268 Identities=16% Similarity=0.102 Sum_probs=193.8
Q ss_pred EEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCc
Q 011015 83 LMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHL 161 (495)
Q Consensus 83 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L 161 (495)
.+..++.++.+|..+ .++|++|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..+.++++|
T Consensus 36 c~~~~~~l~~iP~~~------~~~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL------TEAVKSLDLSNNRI---TYISNSDLQRCVNLQALVLT-SNG---INTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCTTC------CTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECT-TSC---CCEECTTTTTTCTTC
T ss_pred eeCCCCCcccccccc------cccCcEEECCCCcC---cccCHHHhccCCCCCEEECC-CCc---cCccCHhhcCCCCCC
Confidence 566677777677644 35899999999984 44345468889999999999 666 5555 5668899999
Q ss_pred ceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccch--hhccCCcccEEecCCcccccc-ccccccCcccccccC
Q 011015 162 KYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGTSCLRY-LPVGIGELISLREVT 237 (495)
Q Consensus 162 ~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~-~~~~i~~l~~L~~L~ 237 (495)
++|++++|. +..+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|..... .+..++.+++|++|+
T Consensus 103 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 103 EHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 999999998 6666655 7889999999999997 667776 678899999999999853444 456788999999999
Q ss_pred eEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCC
Q 011015 238 KFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGP 317 (495)
Q Consensus 238 l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 317 (495)
+..|.... .....+..+++|+.|.+...... . .....+..+++|+.|++++|.++..... .......
T Consensus 181 l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~-~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~ 247 (353)
T 2z80_A 181 IDASDLQS---YEPKSLKSIQNVSHLILHMKQHI-L---LLEIFVDVTSSVECLELRDTDLDTFHFS------ELSTGET 247 (353)
T ss_dssp EEETTCCE---ECTTTTTTCSEEEEEEEECSCST-T---HHHHHHHHTTTEEEEEEESCBCTTCCCC------------C
T ss_pred CCCCCcCc---cCHHHHhccccCCeecCCCCccc-c---chhhhhhhcccccEEECCCCcccccccc------ccccccc
Confidence 99887764 23345666777888877765432 1 2223345578999999999986542110 1112234
Q ss_pred CCCcceEEEeeecCcCC---CCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccc
Q 011015 318 PPNLKKLEIYDYRGRRN---VVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMN 379 (495)
Q Consensus 318 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 379 (495)
.+.++.++++++..... .+ |.++..+++|+.|++++|.+....+. ++.+++|++|++++++
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHH-HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cchhhccccccccccCcchhhh-HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 56788888887765431 13 45678899999999999988743333 5899999999999765
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-20 Score=176.77 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=58.3
Q ss_pred chhhhccccceeeecCccCCC-CCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccc
Q 011015 339 NWIMSLTNLRDLSLSKWRNCE-HLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKE 416 (495)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 416 (495)
..+..+++|+.|++++|.+.+ ..|. +..+++|++|++++|. ++.+.... +..+++|+.|++++|.
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~l~~L~~L~L~~N~- 210 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-----------FNSLSSLQVLNMSHNN- 210 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT-----------TTTCTTCCEEECTTSC-
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHH-----------hcCCCCCCEEECCCCc-
Confidence 334444555555555554443 2222 4555555555555443 11111100 1145566666655544
Q ss_pred ccccccccccccccccCcccceeeecCCcCccCCCcCCCCCC-CccEEEEeCCcc
Q 011015 417 LEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKT-TLQKLWIWGCPI 470 (495)
Q Consensus 417 l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~-~L~~L~l~~~~~ 470 (495)
++... +..+..+++|++|++++|...+..|..+..++ +|++|++++|+.
T Consensus 211 l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 211 FFSLD-----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CSBCC-----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCccC-----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 33221 12345567777777777766555665666663 777777777765
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=182.71 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=22.2
Q ss_pred ccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 429 EIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 429 ~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
.+..+++|++|+|++|......+..+..+++|+.|++++||.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 444556666666666543322223345556666666666654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=4.4e-20 Score=183.02 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=53.5
Q ss_pred hhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccc
Q 011015 341 IMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEW 420 (495)
Q Consensus 341 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 420 (495)
+..+++|+.|++++|.+.+ +|.+..+++|++|+++++. ++.+.... +.++++|+.|+++++. ++
T Consensus 192 ~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------~~~l~~L~~L~L~~n~-l~-- 255 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNH-FPEIRPGS-----------FHGLSSLKKLWVMNSQ-VS-- 255 (452)
T ss_dssp TTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSC-CSEECGGG-----------GTTCTTCCEEECTTSC-CC--
T ss_pred ccCCCCCCEEECCCCcccc-cccccccccccEEECcCCc-CcccCccc-----------ccCccCCCEEEeCCCc-Cc--
Confidence 4444555555555554332 3344555555555555443 11111110 1245556666644443 22
Q ss_pred ccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 421 DFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 421 ~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
+..|..+..+++|++|++++|......+..+..+++|++|++++||.
T Consensus 256 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 256 ---LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ---eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 22234455566666666666643322223445566666666666653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-19 Score=184.74 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=53.6
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcC
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLI 159 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~ 159 (495)
++.+++.++.+..+|..+ .++|++|++++|.+.. +|. .+++|++|+++ +|. +..+|. .++
T Consensus 42 l~~L~ls~n~L~~lp~~l------~~~L~~L~L~~N~l~~----lp~---~l~~L~~L~Ls-~N~---l~~lp~---~l~ 101 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCL------PAHITTLVIPDNNLTS----LPA---LPPELRTLEVS-GNQ---LTSLPV---LPP 101 (622)
T ss_dssp CCEEECCSSCCSCCCSCC------CTTCSEEEECSCCCSC----CCC---CCTTCCEEEEC-SCC---CSCCCC---CCT
T ss_pred CcEEEecCCCcCccChhh------CCCCcEEEecCCCCCC----CCC---cCCCCCEEEcC-CCc---CCcCCC---CCC
Confidence 455555555555444322 2355555555555321 222 34555555555 444 444443 445
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCc
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGT 217 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 217 (495)
+|++|++++|. +..+|. .+++|+.|++++|. +..+|.. +++|++|++++|
T Consensus 102 ~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 102 GLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN 151 (622)
T ss_dssp TCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred CCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC
Confidence 55555555555 444443 34455555555554 4444432 255555555555
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=3.4e-21 Score=181.62 Aligned_cols=215 Identities=13% Similarity=0.048 Sum_probs=128.5
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
.+++|++|++++|. +....|..|..+++|++|+++ ++. +...+. +..+++|++|++++|. +..++ ..
T Consensus 32 ~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls-~n~---l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-SNV---LYETLD-LESLSTLRTLDLNNNY-VQELL----VG 98 (317)
T ss_dssp TGGGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECT-TSC---CEEEEE-ETTCTTCCEEECCSSE-EEEEE----EC
T ss_pred cCCCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECC-CCc---CCcchh-hhhcCCCCEEECcCCc-ccccc----CC
Confidence 46788888888887 444456677888888888888 655 444433 7778888888888887 55554 23
Q ss_pred ccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCC
Q 011015 183 YNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRK 262 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~ 262 (495)
++|++|++++|. +..++. ..+++|++|++++|.+....+..++.+++|+.|++..|.+.. . .
T Consensus 99 ~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~-~------------ 160 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--V-N------------ 160 (317)
T ss_dssp TTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--E-E------------
T ss_pred CCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--c-c------------
Confidence 788888888887 544443 236778888888886655555566677777777666554432 0 0
Q ss_pred ceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhh
Q 011015 263 CSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIM 342 (495)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 342 (495)
.......+++|+.|++++|.++. ......+++|+.|++++|.... + +..+.
T Consensus 161 ---------------~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~~l~~L~~L~Ls~N~l~~--l-~~~~~ 211 (317)
T 3o53_A 161 ---------------FAELAASSDTLEHLNLQYNFIYD-----------VKGQVVFAKLKTLDLSSNKLAF--M-GPEFQ 211 (317)
T ss_dssp ---------------GGGGGGGTTTCCEEECTTSCCCE-----------EECCCCCTTCCEEECCSSCCCE--E-CGGGG
T ss_pred ---------------HHHHhhccCcCCEEECCCCcCcc-----------cccccccccCCEEECCCCcCCc--c-hhhhc
Confidence 00111234566666666665321 0122235566666666665555 4 33355
Q ss_pred hccccceeeecCccCCCCCCCCCCCCccceeeccc
Q 011015 343 SLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIEL 377 (495)
Q Consensus 343 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 377 (495)
.+++|+.|++++|.+....+.+..+++|+.|++++
T Consensus 212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred ccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 56666666666665443222244445555555543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.5e-20 Score=186.30 Aligned_cols=241 Identities=19% Similarity=0.139 Sum_probs=165.8
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCc
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKL 158 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l 158 (495)
...++..+..+..+|..+ .+++++|++++|. +....+..|..+++|++|+++ ++. +..+ +..|.++
T Consensus 56 ~~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls-~n~---i~~~~~~~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI------PSNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLG-RNS---IRQIEVGAFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSCCSCC------CTTCSEEECCSSC---CCEECTTTTTTCTTCCEEECC-SSC---CCEECTTTTTTC
T ss_pred CcEEEECCCCcCccCCCC------CCCccEEECcCCc---CceECHHHcCCCCCCCEEECC-CCc---cCCcChhhccCc
Confidence 345666666666666544 3578899999887 444456678888999999998 666 5554 4678888
Q ss_pred CCcceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccccccccc-cccCcccccc
Q 011015 159 IHLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLRYLPV-GIGELISLRE 235 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~-~i~~l~~L~~ 235 (495)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|+.|++++|.....++. .+..+++|+.
T Consensus 123 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 123 ASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 999999999988 555554 47788899999999888 555554 578888999999988666666654 4777888888
Q ss_pred cCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcC
Q 011015 236 VTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL 315 (495)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 315 (495)
|++..|.+.. +.. +..+++|+.|++++|.++. ..+..+
T Consensus 201 L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~l~~---------~~~~~~ 238 (452)
T 3zyi_A 201 LNLGMCNIKD-----MPN----------------------------LTPLVGLEELEMSGNHFPE---------IRPGSF 238 (452)
T ss_dssp EECTTSCCSS-----CCC----------------------------CTTCTTCCEEECTTSCCSE---------ECGGGG
T ss_pred EECCCCcccc-----ccc----------------------------ccccccccEEECcCCcCcc---------cCcccc
Confidence 8776655432 111 2334566667776665421 123445
Q ss_pred CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccc
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMN 379 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 379 (495)
..+++|+.|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|++++++
T Consensus 239 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 666777777777776665 5456677777777777777766654443 6677777777777554
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=184.57 Aligned_cols=241 Identities=18% Similarity=0.142 Sum_probs=167.9
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCc
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKL 158 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l 158 (495)
...++..+..+..+|..+ .++++.|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..|.++
T Consensus 45 ~~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~Ls-~n~---i~~i~~~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI------STNTRLLNLHENQI---QIIKVNSFKHLRHLEILQLS-RNH---IRTIEIGAFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSCCSCC------CTTCSEEECCSCCC---CEECTTTTSSCSSCCEEECC-SSC---CCEECGGGGTTC
T ss_pred CCEEEeCCCCcCcCCCCC------CCCCcEEEccCCcC---CeeCHHHhhCCCCCCEEECC-CCc---CCccChhhccCC
Confidence 345666666676666554 35788899988884 44445668888899999998 666 5555 4668888
Q ss_pred CCcceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccccccccc-cccCcccccc
Q 011015 159 IHLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLRYLPV-GIGELISLRE 235 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~-~i~~l~~L~~ 235 (495)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.....++. .+..+++|+.
T Consensus 112 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 112 ANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp SSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred ccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 899999999988 556654 57788899999999887 555554 578888999999988656565554 4778888888
Q ss_pred cCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcC
Q 011015 236 VTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL 315 (495)
Q Consensus 236 L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 315 (495)
|++..|.+.. +.. +..+++|+.|++++|.++. ..+..+
T Consensus 190 L~L~~n~l~~-----~~~----------------------------~~~l~~L~~L~Ls~N~l~~---------~~~~~~ 227 (440)
T 3zyj_A 190 LNLAMCNLRE-----IPN----------------------------LTPLIKLDELDLSGNHLSA---------IRPGSF 227 (440)
T ss_dssp EECTTSCCSS-----CCC----------------------------CTTCSSCCEEECTTSCCCE---------ECTTTT
T ss_pred ecCCCCcCcc-----ccc----------------------------cCCCcccCEEECCCCccCc---------cChhhh
Confidence 8777654432 111 2344567777777666421 123455
Q ss_pred CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeeccccc
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMN 379 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 379 (495)
..+++|+.|++++|.+.. +++..+..+++|+.|+|++|.+....+. +..+++|+.|++++++
T Consensus 228 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 667778888887777666 5566677778888888888876654444 6777888888877654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.1e-21 Score=184.89 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=129.4
Q ss_pred ccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc
Q 011015 122 KVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP 200 (495)
Q Consensus 122 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp 200 (495)
..++..+..+++|++|+++ ++. +..+ |..+..+++|++|++++|. +..++. +..+++|++|++++|. +..++
T Consensus 24 ~~~~~~~~~~~~L~~L~L~-~n~---l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLS-GNP---LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp HHHHHHHTTGGGCSEEECT-TSC---CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE
T ss_pred hhHHHHhccCCCCCEEECc-CCc---cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc
Confidence 3344555666778888887 555 4444 4567778888888888887 443333 6777788888888876 55444
Q ss_pred hhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhh
Q 011015 201 RGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRA 280 (495)
Q Consensus 201 ~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~ 280 (495)
..++|++|++++|.+....+. .+++|+.|++..|.+.. ....
T Consensus 97 ----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-------------------------------~~~~ 138 (317)
T 3o53_A 97 ----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------------------------LRDL 138 (317)
T ss_dssp ----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-------------------------------GGGB
T ss_pred ----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-------------------------------ccch
Confidence 337778888877755433222 23455555555443321 0011
Q ss_pred ccccccccceEEEEEecCCCCCCccchhHHHhhcC-CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCC
Q 011015 281 ELEKQKYLVELGLYFDQAGRRENEEDEDERLLEAL-GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCE 359 (495)
Q Consensus 281 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 359 (495)
.+..+++|+.|++++|.++. ..+..+ ..+++|+.|++++|.+.. + +. ...+++|+.|++++|.+.+
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~l~~L~~L~L~~N~l~~--~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYD--V-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCE---------EEGGGGGGGTTTCCEEECTTSCCCE--E-EC-CCCCTTCCEEECCSSCCCE
T ss_pred hhhccCCCCEEECCCCCCCc---------ccHHHHhhccCcCCEEECCCCcCcc--c-cc-ccccccCCEEECCCCcCCc
Confidence 23334556666666555321 001111 234555666665555544 3 11 1135555555555555544
Q ss_pred CCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCccccee
Q 011015 360 HLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSL 439 (495)
Q Consensus 360 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L 439 (495)
..+.+..+++|++|++++|. ++.++..+ ..+++|+.|++++++ +.. +.+|..+..+++|+.|
T Consensus 206 l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~l~~N~-~~~----~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFDLRGNG-FHC----GTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEECTTCC-CBH----HHHHHHHHTCHHHHHH
T ss_pred chhhhcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEEccCCC-ccC----cCHHHHHhccccceEE
Confidence 33335555555555555443 22222211 134555555544443 211 2233444455555555
Q ss_pred eecCCcCc
Q 011015 440 SIDGCPKL 447 (495)
Q Consensus 440 ~l~~c~~~ 447 (495)
++++|+.+
T Consensus 268 ~l~~~~~l 275 (317)
T 3o53_A 268 AKQTVKKL 275 (317)
T ss_dssp HHHHHHHH
T ss_pred ECCCchhc
Confidence 55544433
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.7e-21 Score=200.43 Aligned_cols=362 Identities=15% Similarity=0.087 Sum_probs=165.3
Q ss_pred ceEEEEEEeccCCCc-chhhhcccccCCCccEEEEcCCccCccc-ccchHHhhcCCeeeEEEccCccCccc--ccccccc
Q 011015 79 KVLHLMLTVDVGTSV-PIAIWNNVKRMRRLRSLLVEGGDYSWSS-KVLPQLFDKLTCLRALTLETHCCFDF--IQKIPKN 154 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~l~~~ 154 (495)
.++++++.++.+... +..+. ..+++|++|++.+|.. +. ..++..+..+++|++|+++ +|.... ...++..
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~-~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIA---KSFKNFKVLVLSSCEG--FSTDGLAAIAATCRNLKELDLR-ESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHH---HHCTTCCEEEEESCEE--EEHHHHHHHHHHCTTCCEEECT-TCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcHHHHHHHH---HhCCCCcEEeCCCcCC--CCHHHHHHHHHhCCCCCEEeCc-CCccCCcchHHHHHH
Confidence 566777776655421 11221 1267777777777631 11 1244545567777777777 443100 0112222
Q ss_pred ccCcCCcceEecCCCC--cc-cccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccc------cccccc
Q 011015 155 IEKLIHLKYLNLCGQT--EI-EKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSC------LRYLPV 225 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~--~~-~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~------~~~~~~ 225 (495)
...+++|++|++++|. +. ..++..+..+++|++|++++|.....+|..+..+++|+.|+++.+.. ...++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 2355677777777764 11 11222234567777777777744555666666677777776544311 011112
Q ss_pred cccCc------------------------ccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhc
Q 011015 226 GIGEL------------------------ISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAE 281 (495)
Q Consensus 226 ~i~~l------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~ 281 (495)
.+.++ ++|++|++..+.... ......+..+++|+.|.+..+ . ........
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~l~~~~~~~~~L~~L~l~~~--~--~~~~l~~l 333 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS--YDLVKLLCQCPKLQRLWVLDY--I--EDAGLEVL 333 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH--HHHHHHHTTCTTCCEEEEEGG--G--HHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH--HHHHHHHhcCCCcCEEeCcCc--c--CHHHHHHH
Confidence 22333 334444333333111 000111223344444444332 0 01111111
Q ss_pred cccccccceEEEEEecCCCCCCc-cchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchh-hhccccceeeec-----C
Q 011015 282 LEKQKYLVELGLYFDQAGRRENE-EDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWI-MSLTNLRDLSLS-----K 354 (495)
Q Consensus 282 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~-----~ 354 (495)
...+++|+.|++..+...+.... .............+++|++|.+.++..... . ...+ ..+++|+.|+++ +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~-~-~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA-A-LITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH-H-HHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH-H-HHHHHhhCCCcceeEeecccCCC
Confidence 22344455554432100000000 001111111111245555554444333220 0 1112 245566666666 2
Q ss_pred ccCCCCCCC-------CCCCCccceeeccccccceEeCccccCCCCCCCCCccc-cCCccceeeeccccccccccccccc
Q 011015 355 WRNCEHLPP-------LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVI-AFPKLKLLDFYIMKELEEWDFGTAI 426 (495)
Q Consensus 355 ~~~~~~~~~-------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l 426 (495)
|...+..|. +..+++|++|++++ .++. .... .+. .+++|+.|++++|. +++..+
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~--------~l~~~~~~L~~L~L~~~~-i~~~~~---- 473 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFE--------YIGTYAKKMEMLSVAFAG-DSDLGM---- 473 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHH--------HHHHHCTTCCEEEEESCC-SSHHHH----
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHH--------HHHHhchhccEeeccCCC-CcHHHH----
Confidence 222222211 23455666666643 1111 0000 011 26778888877776 433221
Q ss_pred cccc-ccCcccceeeecCCcCccCCC-cCCCCCCCccEEEEeCCcchhH
Q 011015 427 KGEI-IIMPRLSSLSIDGCPKLKALP-DHLLQKTTLQKLWIWGCPILEE 473 (495)
Q Consensus 427 ~~~~-~~~~~L~~L~l~~c~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~ 473 (495)
..+ ..+++|++|++++|+.....+ ..+..+++|++|++++|+...+
T Consensus 474 -~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 474 -HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp -HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred -HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 122 468999999999998743322 3445688999999999988443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=5.6e-21 Score=179.71 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=22.4
Q ss_pred cccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcc
Q 011015 434 PRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 434 ~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~ 470 (495)
++|++|++++|.. +.+|. +..+++|++|++++|+.
T Consensus 274 ~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCCC
Confidence 6677777776553 34454 66677777777777754
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-19 Score=180.94 Aligned_cols=231 Identities=13% Similarity=0.050 Sum_probs=162.6
Q ss_pred cCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCC
Q 011015 89 VGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCG 168 (495)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~ 168 (495)
....+|..+......+++|++|++++|. +....|..|..+++|++|+++ +|. +...+. +..+++|++|++++
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls-~N~---l~~~~~-l~~l~~L~~L~Ls~ 89 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNP---LSQISAADLAPFTKLELLNLS-SNV---LYETLD-LESLSTLRTLDLNN 89 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECT-TSC---CEEEEE-CTTCTTCCEEECCS
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEee-CCC---CCCCcc-cccCCCCCEEEecC
Confidence 3334566665533445589999999998 445556778899999999999 666 444433 88899999999999
Q ss_pred CCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCc
Q 011015 169 QTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRA 248 (495)
Q Consensus 169 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 248 (495)
|. +..+|. .++|++|++++|. +..++. ..+++|+.|++++|.+....|..++.+++|+.|+++.|.+...
T Consensus 90 N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 159 (487)
T 3oja_A 90 NY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-- 159 (487)
T ss_dssp SE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE--
T ss_pred Cc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc--
Confidence 98 666653 3789999999998 555543 3568899999999987777777788888888888876655420
Q ss_pred cCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEee
Q 011015 249 CSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYD 328 (495)
Q Consensus 249 ~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 328 (495)
.+. .....+++|+.|++++|.++. ......+++|+.|++++
T Consensus 160 -~~~---------------------------~l~~~l~~L~~L~Ls~N~l~~-----------~~~~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 160 -NFA---------------------------ELAASSDTLEHLNLQYNFIYD-----------VKGQVVFAKLKTLDLSS 200 (487)
T ss_dssp -EGG---------------------------GGGGGTTTCCEEECTTSCCCE-----------EECCCCCTTCCEEECCS
T ss_pred -ChH---------------------------HHhhhCCcccEEecCCCcccc-----------ccccccCCCCCEEECCC
Confidence 000 111245677777777777432 12333577888888888
Q ss_pred ecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeeccccc
Q 011015 329 YRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMN 379 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 379 (495)
|.+.. + |..+..+++|+.|++++|.+.+..+.++.+++|+.|++++++
T Consensus 201 N~l~~--~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 201 NKLAF--M-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCE--E-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCC--C-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 87776 6 444778888888888888777533337777888888887654
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.4e-19 Score=164.00 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=43.7
Q ss_pred eEEEccCccCccccccccccccCcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchhhccCCcccEEe
Q 011015 135 RALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLY 213 (495)
Q Consensus 135 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 213 (495)
++++.+ +.. +..+|..+ .++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|+
T Consensus 14 ~~~~c~-~~~---l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCP-QQG---LQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECC-SSC---CSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcC-cCC---cccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 455555 444 55555332 3566677777666 44333 4466666666666666652222355566666666666
Q ss_pred cCCcc
Q 011015 214 NEGTS 218 (495)
Q Consensus 214 L~~~~ 218 (495)
+++|.
T Consensus 87 l~~n~ 91 (285)
T 1ozn_A 87 LSDNA 91 (285)
T ss_dssp CCSCT
T ss_pred CCCCC
Confidence 66663
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=5.1e-19 Score=180.02 Aligned_cols=258 Identities=21% Similarity=0.164 Sum_probs=165.6
Q ss_pred CCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhcccc
Q 011015 105 RRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYN 184 (495)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 184 (495)
.++++|++++|.+.. +|..+. ++|++|+++ +|. +..+|. .+++|++|++++|. +..+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~~----lp~~l~--~~L~~L~L~-~N~---l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTT----LPDCLP--AHITTLVIP-DNN---LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSC----CCSCCC--TTCSEEEEC-SCC---CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTT
T ss_pred CCCcEEEecCCCcCc----cChhhC--CCCcEEEec-CCC---CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCC
Confidence 468999999998543 444333 789999999 776 667775 57899999999999 777886 6789
Q ss_pred CcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCce
Q 011015 185 LECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCS 264 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~ 264 (495)
|++|++++|. +..+|. .+++|+.|++++|.+ ..+|.. +++|++|++..|.+.. . ..
T Consensus 103 L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~l-~~lp~~---l~~L~~L~Ls~N~l~~--l---~~----------- 158 (622)
T 3g06_A 103 LLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQL-TSLPVL---PPGLQELSVSDNQLAS--L---PA----------- 158 (622)
T ss_dssp CCEEEECSCC-CCCCCC---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSC--C---CC-----------
T ss_pred CCEEECcCCc-CCCCCC---CCCCcCEEECCCCCC-CcCCCC---CCCCCEEECcCCcCCC--c---CC-----------
Confidence 9999999998 777776 678899999999954 446653 3778888887665432 0 00
Q ss_pred eeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhc
Q 011015 265 IRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSL 344 (495)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 344 (495)
..++|+.|++++|.++. ++ ..+++|+.|++++|.+.. + |. .+
T Consensus 159 -------------------~~~~L~~L~L~~N~l~~----------l~---~~~~~L~~L~Ls~N~l~~--l-~~---~~ 200 (622)
T 3g06_A 159 -------------------LPSELCKLWAYNNQLTS----------LP---MLPSGLQELSVSDNQLAS--L-PT---LP 200 (622)
T ss_dssp -------------------CCTTCCEEECCSSCCSC----------CC---CCCTTCCEEECCSSCCSC--C-CC---CC
T ss_pred -------------------ccCCCCEEECCCCCCCC----------Cc---ccCCCCcEEECCCCCCCC--C-CC---cc
Confidence 11345555555555321 11 234566666666666555 4 22 23
Q ss_pred cccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccccccccc
Q 011015 345 TNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGT 424 (495)
Q Consensus 345 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 424 (495)
++|+.|++++|.+.. +|. .+++|++|++++|. ++.++ ..+++|+.|++++|. ++.++
T Consensus 201 ~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~-L~~lp---------------~~l~~L~~L~Ls~N~-L~~lp--- 257 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA--LPSGLKELIVSGNR-LTSLP---------------VLPSELKELMVSGNR-LTSLP--- 257 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC--CCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSSC-CSCCC---
T ss_pred chhhEEECcCCcccc-cCC--CCCCCCEEEccCCc-cCcCC---------------CCCCcCcEEECCCCC-CCcCC---
Confidence 566667776665543 232 24667777776442 22111 135667777766654 44332
Q ss_pred ccccccccCcccceeeecCCcCccCCCcCCCCCCCccEEEEeCCcch
Q 011015 425 AIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 425 ~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L~l~~~~~l 471 (495)
. .+++|++|++++|.. ..+|..+..+++|+.|++++|+..
T Consensus 258 ---~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 258 ---M---LPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ---C---CCTTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCCCC
T ss_pred ---c---ccccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCCCC
Confidence 2 456677777777643 366666666777777777777653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=5.4e-21 Score=179.79 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=45.5
Q ss_pred CcCCcceEecCCCCcccccchhh--hccccCcEeecCCCcCCcccchhhccC-----CcccEEecCCccccccccccccC
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETL--CELYNLECLNVSGCWNLRELPRGIGKL-----RKLMYLYNEGTSCLRYLPVGIGE 229 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~L~~~~~~~~lp~~l~~l-----~~L~~L~L~~~~~~~~~~~~i~~ 229 (495)
++++|++|++++|.+.+.+|..+ ..+++|++|++++|. +...|..++.+ ++|++|++++|.+....|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45556666666655444455443 555556666666555 33335444444 55666666655544444455555
Q ss_pred cccccccCeEEec
Q 011015 230 LISLREVTKFVVG 242 (495)
Q Consensus 230 l~~L~~L~l~~~~ 242 (495)
+++|++|++++|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 5566655555443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.5e-20 Score=184.01 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=101.4
Q ss_pred eeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccE
Q 011015 133 CLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMY 211 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 211 (495)
+|++|+++ ++. +..+ |..+..+++|++|++++|. +...++ ++.+++|++|++++|. +..+|. .++|++
T Consensus 35 ~L~~L~Ls-~n~---l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLS-GNP---LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (487)
T ss_dssp GCCEEECC-SSC---CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CccEEEee-CCc---CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCE
Confidence 77777777 555 4444 4567777777777777777 333333 6777777777777776 554442 367777
Q ss_pred EecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceE
Q 011015 212 LYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVEL 291 (495)
Q Consensus 212 L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 291 (495)
|++++|.+....+. .+++|+.|++..|.+.. .....+..+++|+.|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-------------------------------~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITM-------------------------------LRDLDEGCRSRVQYL 149 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------------------------GGGBCGGGGSSEEEE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------------------------CCchhhcCCCCCCEE
Confidence 77777754433222 23455555554443321 001223344556666
Q ss_pred EEEEecCCCCCCccchhHHHhhcCC-CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCcc
Q 011015 292 GLYFDQAGRRENEEDEDERLLEALG-PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSL 370 (495)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 370 (495)
++++|.++. ..+..+. .+++|+.|++++|.+.. +++ ...+++|+.|++++|.+.+..+.+..+++|
T Consensus 150 ~Ls~N~l~~---------~~~~~l~~~l~~L~~L~Ls~N~l~~--~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 150 DLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYD--VKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216 (487)
T ss_dssp ECTTSCCCE---------EEGGGGGGGTTTCCEEECTTSCCCE--EEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred ECCCCCCCC---------cChHHHhhhCCcccEEecCCCcccc--ccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCc
Confidence 666655321 1122222 34556666665555544 311 223555566666555555443345555555
Q ss_pred ceeecccc
Q 011015 371 EYLVIELM 378 (495)
Q Consensus 371 ~~L~l~~~ 378 (495)
+.|++++|
T Consensus 217 ~~L~Ls~N 224 (487)
T 3oja_A 217 TWISLRNN 224 (487)
T ss_dssp SEEECTTS
T ss_pred cEEEecCC
Confidence 55555543
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.9e-21 Score=198.75 Aligned_cols=358 Identities=16% Similarity=0.037 Sum_probs=199.2
Q ss_pred ceEEEEEEeccCCC----cc--------hhhhcccccCCCccEEEEcCCccCcccccchHHhh-cCCeeeEEEccCccCc
Q 011015 79 KVLHLMLTVDVGTS----VP--------IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFD-KLTCLRALTLETHCCF 145 (495)
Q Consensus 79 ~~~~l~l~~~~~~~----~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~ 145 (495)
.++.+++.++.... .+ ..+......+++|+.|++++|.+ ....+..+. .+++|++|+++ +|..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~~~~~l~~~~~~L~~L~L~-~~~~ 142 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV---TDDCLELIAKSFKNFKVLVLS-SCEG 142 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC---CHHHHHHHHHHCTTCCEEEEE-SCEE
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE---cHHHHHHHHHhCCCCcEEeCC-CcCC
Confidence 67888888764211 11 11111223589999999999973 333344453 78999999999 5531
Q ss_pred ccccc--ccccccCcCCcceEecCCCCcccccch----hhhccccCcEeecCCCc-CC--cccchhhccCCcccEEecCC
Q 011015 146 DFIQK--IPKNIEKLIHLKYLNLCGQTEIEKLPE----TLCELYNLECLNVSGCW-NL--RELPRGIGKLRKLMYLYNEG 216 (495)
Q Consensus 146 ~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~L~~~~-~~--~~lp~~l~~l~~L~~L~L~~ 216 (495)
+.. ++..+..+++|++|++++|.+.+..+. ....+++|++|++++|. .+ ..++..+..+++|++|++++
T Consensus 143 --~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 --FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp --EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred --CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 333 455556899999999999984333222 23367799999999985 11 11233345679999999999
Q ss_pred ccccccccccccCcccccccCeEEecCc--------------------------cCCccCcc-chhcccccCCceeeccC
Q 011015 217 TSCLRYLPVGIGELISLREVTKFVVGGG--------------------------YDRACSLG-SLKKLNLLRKCSIRGLG 269 (495)
Q Consensus 217 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~--------------------------~~~~~~~~-~l~~l~~L~~l~~~~~~ 269 (495)
|.....+|..+..+++|++|.+..+... ......+. ....+++|+.|++..+.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 8555557777788889998875433210 00000011 11234555555555443
Q ss_pred CCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeec------CcCCCCCCc----
Q 011015 270 GVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYR------GRRNVVPIN---- 339 (495)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~~~~~~---- 339 (495)
.. +......+..+++|+.|+++.+. ....+......+++|++|++.++. ... +...
T Consensus 301 -l~--~~~l~~~~~~~~~L~~L~l~~~~---------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~--l~~~~l~~ 366 (594)
T 2p1m_B 301 -VQ--SYDLVKLLCQCPKLQRLWVLDYI---------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA--LTEQGLVS 366 (594)
T ss_dssp -CC--HHHHHHHHTTCTTCCEEEEEGGG---------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC--CCHHHHHH
T ss_pred -CC--HHHHHHHHhcCCCcCEEeCcCcc---------CHHHHHHHHHhCCCCCEEEEecCcccccccCCC--CCHHHHHH
Confidence 21 11222334455666666666542 111122222235666666664321 000 1011
Q ss_pred hhhhccccceeeecCccCCCCCCC-C-CCCCccceeecc-----ccccceEeCc--cccCCCCCCCCCccccCCccceee
Q 011015 340 WIMSLTNLRDLSLSKWRNCEHLPP-L-GKLPSLEYLVIE-----LMNSVKRVGN--EFLGVESDTDGSSVIAFPKLKLLD 410 (495)
Q Consensus 340 ~~~~~~~L~~L~l~~~~~~~~~~~-~-~~l~~L~~L~l~-----~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~ 410 (495)
....+++|+.|.+..+.+...... + ..+++|+.|+++ +|..++..+. .+.. ...++++|+.|+
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~--------l~~~~~~L~~L~ 438 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------IVEHCKDLRRLS 438 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH--------HHHHCTTCCEEE
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH--------HHhhCCCccEEe
Confidence 112366666665555444332111 2 246777777776 3444432111 0000 012567888888
Q ss_pred eccccccccccccccccccccc-CcccceeeecCCcCccCCCcCC-CCCCCccEEEEeCCcch
Q 011015 411 FYIMKELEEWDFGTAIKGEIII-MPRLSSLSIDGCPKLKALPDHL-LQKTTLQKLWIWGCPIL 471 (495)
Q Consensus 411 l~~~~~l~~~~~~~~l~~~~~~-~~~L~~L~l~~c~~~~~l~~~~-~~l~~L~~L~l~~~~~l 471 (495)
+++ .++...+ ..+.. +++|++|++++|......+..+ ..+++|++|++++|+..
T Consensus 439 L~~--~l~~~~~-----~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 439 LSG--LLTDKVF-----EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCS--SCCHHHH-----HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred ecC--cccHHHH-----HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 754 2333221 23333 8899999999988644333233 56899999999999973
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=8.7e-20 Score=173.72 Aligned_cols=255 Identities=16% Similarity=0.148 Sum_probs=135.7
Q ss_pred CccEEEEcCCccCcccccchHHhhcC--CeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccc-cchhhhcc
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKL--TCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEK-LPETLCEL 182 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l 182 (495)
.++.++++++.+. +..+..+ +.+++|+++ ++. +...+..+..+++|++|++++|.+... +|..+..+
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~-~n~---l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCP-RSF---MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECT-TCE---ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcC-Ccc---ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 3566666665531 3334444 666677776 444 333333355566777777777663323 55556666
Q ss_pred ccCcEeecCCCcCCcccchhhccCCcccEEecCCcc-ccc-cccccccCcccccccCeEEecCccCCccCccchhccccc
Q 011015 183 YNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTS-CLR-YLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLL 260 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~-~~~-~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L 260 (495)
++|++|++++|......|..++.+++|++|++++|. +.. .++..+..
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~------------------------------- 166 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS------------------------------- 166 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-------------------------------
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-------------------------------
Confidence 777777777766333455556666677777776662 211 12222223
Q ss_pred CCceeeccCCCCChhhhHhhccccccccceEEEEEe-cCCCCCCccchhHHHhhcCCCCC-CcceEEEeeec--CcCCCC
Q 011015 261 RKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFD-QAGRRENEEDEDERLLEALGPPP-NLKKLEIYDYR--GRRNVV 336 (495)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~~~~~ 336 (495)
+++|++|++++| .++ ...+...+..++ +|++|++++|. .....+
T Consensus 167 ------------------------~~~L~~L~l~~~~~l~--------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 167 ------------------------CSRLDELNLSWCFDFT--------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp ------------------------CTTCCEEECCCCTTCC--------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred ------------------------CCCCCEEcCCCCCCcC--------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 334444444444 311 111223333445 56666666653 221113
Q ss_pred CCchhhhccccceeeecCcc-CCCCCC-CCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccc
Q 011015 337 PINWIMSLTNLRDLSLSKWR-NCEHLP-PLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIM 414 (495)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 414 (495)
+..+..+++|+.|++++|. +.+..+ .+..+++|++|++++|..+.. ..+ . .+..+++|+.|++++|
T Consensus 215 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~-~--------~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 215 -STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETL-L--------ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGG-G--------GGGGCTTCCEEECTTS
T ss_pred -HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHH-H--------HHhcCCCCCEEeccCc
Confidence 4455567777777777776 333222 366677777777777653221 111 0 1235788888887777
Q ss_pred ccccccccccccccccccC-cccceeeecCCcCccCCCcCCC
Q 011015 415 KELEEWDFGTAIKGEIIIM-PRLSSLSIDGCPKLKALPDHLL 455 (495)
Q Consensus 415 ~~l~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~l~~~~~ 455 (495)
+.... +..+ .+|+.|++++|...+..|..++
T Consensus 283 --i~~~~--------~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 --VPDGT--------LQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp --SCTTC--------HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred --cCHHH--------HHHHHhhCcceEEecccCccccCCccc
Confidence 33222 2223 3477777877776666665554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=2.5e-18 Score=158.70 Aligned_cols=208 Identities=21% Similarity=0.126 Sum_probs=131.1
Q ss_pred CCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 105 RRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+.|++|++++|.+ ....+..|..+++|++|+++ ++. +..++ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 28 ~~l~~L~ls~n~l---~~~~~~~~~~l~~L~~L~l~-~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLS-RCE---IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCC---CEECTTTTTTCTTCSEEECT-TCC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcc---cccCHhHhccccCCcEEECC-CCc---CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 4688888888873 34334457778888888888 555 55553 4577888888888888883333445677888
Q ss_pred cCcEeecCCCcCCcccch-hhccCCcccEEecCCccccc-cccccccCcccccccCeEEecCccCCccCccchhcccccC
Q 011015 184 NLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLR-YLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLR 261 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~-~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 261 (495)
+|++|++++|. +..++. .++.+++|++|++++|.+.. .+|..++.+++|++|++.+|.+... ....+..++.|+
T Consensus 101 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~ 176 (276)
T 2z62_A 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMP 176 (276)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCT
T ss_pred cccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhcc
Confidence 88888888887 444443 57788888888888886544 3577777788888887776655431 111122222111
Q ss_pred CceeeccCCCCChhhhHhhccccccccc-eEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCch
Q 011015 262 KCSIRGLGGVSDAGEVRRAELEKQKYLV-ELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINW 340 (495)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 340 (495)
.+. .|+++.|.++. +........+|+.|++++|.+.. +++..
T Consensus 177 -------------------------~l~l~L~ls~n~l~~----------~~~~~~~~~~L~~L~L~~n~l~~--~~~~~ 219 (276)
T 2z62_A 177 -------------------------LLNLSLDLSLNPMNF----------IQPGAFKEIRLKELALDTNQLKS--VPDGI 219 (276)
T ss_dssp -------------------------TCCEEEECCSSCCCE----------ECTTSSCSCCEEEEECCSSCCSC--CCTTT
T ss_pred -------------------------ccceeeecCCCcccc----------cCccccCCCcccEEECCCCceee--cCHhH
Confidence 111 45555555321 12222233467777777777665 64555
Q ss_pred hhhccccceeeecCccCCCC
Q 011015 341 IMSLTNLRDLSLSKWRNCEH 360 (495)
Q Consensus 341 ~~~~~~L~~L~l~~~~~~~~ 360 (495)
+..+++|+.|++++|.+..+
T Consensus 220 ~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTTCCSCCEEECCSSCBCCC
T ss_pred hcccccccEEEccCCccccc
Confidence 66777777777777765543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=7.8e-18 Score=154.87 Aligned_cols=177 Identities=21% Similarity=0.234 Sum_probs=94.4
Q ss_pred hhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch-hhccC
Q 011015 128 FDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR-GIGKL 206 (495)
Q Consensus 128 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l 206 (495)
...+++|+.|+++ ++. +..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. .++.+
T Consensus 37 ~~~l~~L~~L~l~-~~~---i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIAN-NSD---IKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECT-TSC---CCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred cccccceeeeeeC-CCC---ccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCC
Confidence 3455556666666 444 33333 35556666666666665 33343 45566666666666665 333333 34566
Q ss_pred CcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhcccccc
Q 011015 207 RKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQK 286 (495)
Q Consensus 207 ~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (495)
++|++|++++|.+....+..++.+++|+.|++..|.+.. ..
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------~~-------------- 149 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-------------------------LP-------------- 149 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------------CC--------------
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-------------------------cC--------------
Confidence 666666666665443333445556666665554433221 00
Q ss_pred ccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CC
Q 011015 287 YLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LG 365 (495)
Q Consensus 287 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~ 365 (495)
...+..+++|+.|++++|.+.. +++..+..+++|+.|++++|.+.+..+. +.
T Consensus 150 -------------------------~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 150 -------------------------KGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp -------------------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------------------HHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 0011123344444444444444 4345556667777777777766654444 56
Q ss_pred CCCccceeecccc
Q 011015 366 KLPSLEYLVIELM 378 (495)
Q Consensus 366 ~l~~L~~L~l~~~ 378 (495)
.+++|++|+++++
T Consensus 203 ~l~~L~~L~l~~N 215 (272)
T 3rfs_A 203 RLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCcCCCEEEccCC
Confidence 6777777777644
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=2.3e-17 Score=151.73 Aligned_cols=230 Identities=16% Similarity=0.098 Sum_probs=167.7
Q ss_pred CeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccE
Q 011015 132 TCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMY 211 (495)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~ 211 (495)
..+..+++. ... +... .....+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++
T Consensus 19 ~~l~~l~l~-~~~---~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~ 89 (272)
T 3rfs_A 19 AETIKANLK-KKS---VTDA-VTQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTY 89 (272)
T ss_dssp HHHHHHHHT-CSC---TTSE-ECHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCE
T ss_pred HHHHHHHhc-Ccc---cccc-cccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCE
Confidence 344445555 333 3332 236678999999999998 666654 8899999999999998 66554 7899999999
Q ss_pred EecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceE
Q 011015 212 LYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVEL 291 (495)
Q Consensus 212 L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 291 (495)
|++++|.+....+..++.+++|++|++..|.+.. ..
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------~~------------------- 125 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-------------------------LP------------------- 125 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-------------------------CC-------------------
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCc-------------------------cC-------------------
Confidence 9999997765555667888999988876554321 00
Q ss_pred EEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCcc
Q 011015 292 GLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSL 370 (495)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L 370 (495)
...+..+++|+.|++++|.+.. +++.++..+++|+.|++++|.+.+..+. ++.+++|
T Consensus 126 --------------------~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 126 --------------------DGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp --------------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --------------------HHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 1112335667777777776666 6567788999999999999988865555 7899999
Q ss_pred ceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCC
Q 011015 371 EYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKAL 450 (495)
Q Consensus 371 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l 450 (495)
++|++++|. ++.+... .+..+++|+.|++++|+ +. +.+++|+.|+++.|...+.+
T Consensus 184 ~~L~L~~N~-l~~~~~~-----------~~~~l~~L~~L~l~~N~------~~-------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 184 KDLRLYQNQ-LKSVPDG-----------VFDRLTSLQYIWLHDNP------WD-------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CEEECCSSC-CSCCCTT-----------TTTTCTTCCEEECCSSC------BC-------CCTTTTHHHHHHHHHTGGGB
T ss_pred CEEECCCCc-CCccCHH-----------HHhCCcCCCEEEccCCC------cc-------ccCcHHHHHHHHHHhCCCcc
Confidence 999999765 2222211 12368999999977765 32 25789999999999888889
Q ss_pred CcCCCCCCCcc
Q 011015 451 PDHLLQKTTLQ 461 (495)
Q Consensus 451 ~~~~~~l~~L~ 461 (495)
|..++.++...
T Consensus 239 p~~~~~~~~~~ 249 (272)
T 3rfs_A 239 RNSAGSVAPDS 249 (272)
T ss_dssp BCTTSCBCGGG
T ss_pred cCcccccCCCC
Confidence 98887665543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.2e-17 Score=154.55 Aligned_cols=101 Identities=17% Similarity=0.316 Sum_probs=59.0
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+++|++|++.+|.+.. ++. +..+++|++|+++ ++. +..++. +..+++|++|++++|. +..++ .+..++
T Consensus 40 l~~L~~L~l~~~~i~~----l~~-~~~l~~L~~L~L~-~n~---i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT----IEG-VQYLNNLIGLELK-DNQ---ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCC----CTT-GGGCTTCCEEECC-SSC---CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCT
T ss_pred cCCcCEEEeeCCCccC----chh-hhccCCCCEEEcc-CCc---CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCC
Confidence 5566666666665322 232 5566666666666 444 444444 6666666666666666 44444 355666
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCcc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTS 218 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 218 (495)
+|++|++++|. +..++. +..+++|++|++++|.
T Consensus 108 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 108 SIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp TCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc
Confidence 66666666665 444443 5666666666666663
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.3e-18 Score=165.67 Aligned_cols=252 Identities=17% Similarity=0.098 Sum_probs=151.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccC--CCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccc-c-cccc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRM--RRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQ-K-IPKN 154 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~-l~~~ 154 (495)
.++++++.++.+. +..+.. + +.++.|++.+|.+ .+..+. +..+++|++|+++ ++. +. . ++..
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~----~~~~~l~~L~l~~n~l---~~~~~~-~~~~~~L~~L~L~-~~~---l~~~~~~~~ 113 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGR----LLSQGVIAFRCPRSFM---DQPLAE-HFSPFRVQHMDLS-NSV---IEVSTLHGI 113 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHH----HHHTTCSEEECTTCEE---CSCCCS-CCCCBCCCEEECT-TCE---ECHHHHHHH
T ss_pred hheeeccccccCC--HHHHHh----hhhccceEEEcCCccc---cccchh-hccCCCCCEEEcc-CCC---cCHHHHHHH
Confidence 3567777766665 444444 5 8899999998874 333344 5578999999998 655 33 2 6677
Q ss_pred ccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCc--ccchhhccCCcccEEecCCc-ccccc-ccccccCc
Q 011015 155 IEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLR--ELPRGIGKLRKLMYLYNEGT-SCLRY-LPVGIGEL 230 (495)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~-~~~~~-~~~~i~~l 230 (495)
+..+++|++|++++|.+.+..+..++.+++|++|++++|..+. .++..+..+++|++|++++| .+... ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 8889999999999998555677778889999999999984354 36666888999999999998 55443 45667778
Q ss_pred c-cccccCeEEec--CccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccch
Q 011015 231 I-SLREVTKFVVG--GGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDE 307 (495)
Q Consensus 231 ~-~L~~L~l~~~~--~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 307 (495)
+ +|++|++.+|. ... ......+..+++|+.|++..+...... ....+..+++|+.|++++|. ..
T Consensus 194 ~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~~~--------~~ 260 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFQLNYLQHLSLSRCY--------DI 260 (336)
T ss_dssp CTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCGG---GGGGGGGCTTCCEEECTTCT--------TC
T ss_pred ccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCHH---HHHHHhCCCCCCEeeCCCCC--------CC
Confidence 8 88888887663 211 111122334555555555444322111 11233444555555555553 11
Q ss_pred hHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhc-cccceeeecCccCCCCCCC
Q 011015 308 DERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSL-TNLRDLSLSKWRNCEHLPP 363 (495)
Q Consensus 308 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~ 363 (495)
.......+..+++|+.|++++| .. ...+..+ ..++.|++++|.+.+..|.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~-----~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VP-----DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SC-----TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cC-----HHHHHHHHhhCcceEEecccCccccCC
Confidence 1122233344555666665555 11 2222222 2355555555555554443
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.7e-17 Score=153.08 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred CeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchhhccCCcc
Q 011015 132 TCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGIGKLRKL 209 (495)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 209 (495)
+.|++|+++ ++. +..++ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|......+..+..+++|
T Consensus 28 ~~l~~L~ls-~n~---l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLS-FNP---LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECT-TCC---CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECC-CCc---ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 356777776 554 44443 356667777777777776 33333 356667777777777776322333456667777
Q ss_pred cEEecCCccccccccccccCcccccccCeEEe
Q 011015 210 MYLYNEGTSCLRYLPVGIGELISLREVTKFVV 241 (495)
Q Consensus 210 ~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~ 241 (495)
++|++++|.+....+..++.+++|++|++.+|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 77777666443333334455555555544433
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=4.4e-17 Score=151.01 Aligned_cols=126 Identities=18% Similarity=0.055 Sum_probs=82.4
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhc
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCE 181 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 181 (495)
.+++++.+++.++.+.. +|..+ .+.+++|+++ ++. +..+ +..+..+++|++|++++|. +..++.. +.
T Consensus 8 ~l~~l~~l~~~~~~l~~----ip~~~--~~~l~~L~L~-~N~---l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 75 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA----LPPDL--PKDTTILHLS-ENL---LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT 75 (290)
T ss_dssp CSTTCCEEECTTSCCSS----CCSCC--CTTCCEEECT-TSC---CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SC
T ss_pred ccCCccEEECCCCCCCc----CCCCC--CCCCCEEEcC-CCc---CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CC
Confidence 37777788887776432 33222 2567778887 555 4444 4567777888888888877 5555543 67
Q ss_pred cccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEe
Q 011015 182 LYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVV 241 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~ 241 (495)
+++|++|++++|. +..+|..+..+++|++|++++|.+....|..+..+++|+.|++..|
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 7778888888776 6677777777778888888777554433344566666666655444
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.2e-16 Score=148.04 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeecccc
Q 011015 318 PPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELM 378 (495)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 378 (495)
+++|+.|++++|.+.. +++..+..+++|+.|++++|.+....+. +..+++|+.|+++++
T Consensus 99 l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 4445555555555554 5455566667777777777765544333 456666666666544
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=5.4e-19 Score=171.50 Aligned_cols=142 Identities=13% Similarity=0.066 Sum_probs=91.2
Q ss_pred ccCCCccEEEEcCCccCccc-ccchHHhhcCCeeeEEEccCccCc-ccccccccc-------ccCcCCcceEecCCCCcc
Q 011015 102 KRMRRLRSLLVEGGDYSWSS-KVLPQLFDKLTCLRALTLETHCCF-DFIQKIPKN-------IEKLIHLKYLNLCGQTEI 172 (495)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~l~~~-------~~~l~~L~~L~l~~~~~~ 172 (495)
..+++|++|++++|.+.... ..++..+..+++|++|+++ ++.. .+...+|.. +..+++|++|++++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-ccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34888999999888743211 1134446678889999988 5431 112233333 367888899999888844
Q ss_pred c----ccchhhhccccCcEeecCCCcCCcc----cchhhccC---------CcccEEecCCcccc-cccc---ccccCcc
Q 011015 173 E----KLPETLCELYNLECLNVSGCWNLRE----LPRGIGKL---------RKLMYLYNEGTSCL-RYLP---VGIGELI 231 (495)
Q Consensus 173 ~----~lp~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l---------~~L~~L~L~~~~~~-~~~~---~~i~~l~ 231 (495)
. .+|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 4 3677788888899999988873222 23334444 78888888888654 2333 3455667
Q ss_pred cccccCeEEecCc
Q 011015 232 SLREVTKFVVGGG 244 (495)
Q Consensus 232 ~L~~L~l~~~~~~ 244 (495)
+|++|++..|.+.
T Consensus 188 ~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 188 LLHTVKMVQNGIR 200 (386)
T ss_dssp TCCEEECCSSCCC
T ss_pred CcCEEECcCCCCC
Confidence 7777777666443
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=4.4e-17 Score=149.67 Aligned_cols=121 Identities=23% Similarity=0.266 Sum_probs=63.4
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccchh-hhccc
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPET-LCELY 183 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~ 183 (495)
..++++++++.+.. +|..+ .+.|++|+++ ++. +..++ ..+..+++|++|++++|. +..+|.. +..++
T Consensus 17 ~~~~l~~~~~~l~~----ip~~~--~~~l~~L~l~-~n~---l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA----IPSNI--PADTKKLDLQ-SNK---LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSS----CCSCC--CTTCSEEECC-SSC---CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCT
T ss_pred CCCEEEccCCCCCc----cCCCC--CCCCCEEECc-CCC---CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCC
Confidence 35566666665332 22211 1456666666 444 44443 346666666666666666 4444433 35566
Q ss_pred cCcEeecCCCcCCcccch-hhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 184 NLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
+|++|++++|. +..+|. .+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 86 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 86 NLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence 66666666665 444443 3456666666666666443333333344444444443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=153.68 Aligned_cols=228 Identities=16% Similarity=0.049 Sum_probs=137.8
Q ss_pred CCCccEEEEcCCccCccc-ccchHHhhcCCeeeEEEccCccCccccccccccc--cCcCCcceEecCCCCcccccc----
Q 011015 104 MRRLRSLLVEGGDYSWSS-KVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNI--EKLIHLKYLNLCGQTEIEKLP---- 176 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~lp---- 176 (495)
...++.+.+.++.+.... ..+.. +..+++|++|+++ ++.. ....|..+ ..+++|++|++++|.+.+..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~-~n~l--~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLE-DLKI--TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEE-SCCC--BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEee-CCEe--ccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 455778888777642111 00112 2345668889988 5552 34456666 788889999999888554433
Q ss_pred hhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCcccccc--cc--ccccCcccccccCeEEecCccCCccCcc
Q 011015 177 ETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRY--LP--VGIGELISLREVTKFVVGGGYDRACSLG 252 (495)
Q Consensus 177 ~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 252 (495)
..+..+++|++|++++|......|..++.+++|++|++++|.+.+. ++ ..++.+++|++|++..|....
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------- 211 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------- 211 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-------
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-------
Confidence 2345688899999988884344446678888899999988865432 22 223567777777776554321
Q ss_pred chhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCC---CCCcceEEEeee
Q 011015 253 SLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGP---PPNLKKLEIYDY 329 (495)
Q Consensus 253 ~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~ 329 (495)
.+......+..+++|++|++++|.++.. .+..+.. +++|++|++++|
T Consensus 212 ---------------------l~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 212 ---------------------PTGVCAALAAAGVQPHSLDLSHNSLRAT---------VNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp ---------------------HHHHHHHHHHHTCCCSSEECTTSCCCCC---------CCSCCSSCCCCTTCCCEECCSS
T ss_pred ---------------------hHHHHHHHHhcCCCCCEEECCCCCCCcc---------chhhHHhccCcCcCCEEECCCC
Confidence 1111111234556777788877775321 1222222 257777777777
Q ss_pred cCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCccceeecccc
Q 011015 330 RGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELM 378 (495)
Q Consensus 330 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 378 (495)
.+.. + |..+ +++|+.|++++|.+.+. |.+..+++|+.|+++++
T Consensus 262 ~l~~--l-p~~~--~~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 262 GLEQ--V-PKGL--PAKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCS--C-CSCC--CSCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred CCCc--h-hhhh--cCCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence 7665 6 3333 26777777777766542 44566677777777644
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.2e-18 Score=169.02 Aligned_cols=269 Identities=16% Similarity=0.089 Sum_probs=161.8
Q ss_pred chHHhhcCCeeeEEEccCccCcccccc-----ccccccCcCCcceEecCCCC---cccccchhh-------hccccCcEe
Q 011015 124 LPQLFDKLTCLRALTLETHCCFDFIQK-----IPKNIEKLIHLKYLNLCGQT---EIEKLPETL-------CELYNLECL 188 (495)
Q Consensus 124 l~~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~---~~~~lp~~~-------~~l~~L~~L 188 (495)
++..+..+++|++|+++ ++. +.. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|
T Consensus 24 l~~~l~~~~~L~~L~L~-~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLS-GNT---IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TSHHHHHCSCCCEEECT-TSE---ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHhcCCCccEEECC-CCC---CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 56668889999999999 665 333 33457789999999999974 222445444 678999999
Q ss_pred ecCCCcCCc----ccchhhccCCcccEEecCCcccccccccc----ccCc---------ccccccCeEEecCccCCccCc
Q 011015 189 NVSGCWNLR----ELPRGIGKLRKLMYLYNEGTSCLRYLPVG----IGEL---------ISLREVTKFVVGGGYDRACSL 251 (495)
Q Consensus 189 ~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~~~~~----i~~l---------~~L~~L~l~~~~~~~~~~~~~ 251 (495)
+|++|.... .+|..+..+++|++|++++|.+....+.. +..+ ++|++|++..|.+..
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------ 173 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------ 173 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc------
Confidence 999998443 36778889999999999999764333332 3333 666666666554431
Q ss_pred cchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhh-cCCCCCCcceEEEeeec
Q 011015 252 GSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLE-ALGPPPNLKKLEIYDYR 330 (495)
Q Consensus 252 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 330 (495)
.........+..+++|+.|++++|.++. .....+.. .+..+++|+.|++++|.
T Consensus 174 ---------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~-----~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 174 ---------------------GSMKEWAKTFQSHRLLHTVKMVQNGIRP-----EGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp ---------------------GGHHHHHHHHHHCTTCCEEECCSSCCCH-----HHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred ---------------------HHHHHHHHHHHhCCCcCEEECcCCCCCH-----hHHHHHHHHHhhcCCCccEEECcCCC
Confidence 1111112334455677777777776421 11112233 56667777777777776
Q ss_pred CcC---CCCCCchhhhccccceeeecCccCCCC----CCC-C--CCCCccceeeccccccce----EeCccccCCCCCCC
Q 011015 331 GRR---NVVPINWIMSLTNLRDLSLSKWRNCEH----LPP-L--GKLPSLEYLVIELMNSVK----RVGNEFLGVESDTD 396 (495)
Q Consensus 331 ~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~-~--~~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~ 396 (495)
+.. ..+ +.++..+++|+.|++++|.+... ++. + +.+++|++|++++|..-. .+...+.
T Consensus 228 l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~------- 299 (386)
T 2ca6_A 228 FTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID------- 299 (386)
T ss_dssp CHHHHHHHH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-------
T ss_pred CCcHHHHHH-HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-------
Confidence 521 013 45566777788888887766543 222 2 447788888887665111 0111110
Q ss_pred CCccccCCccceeeecccccccccccccccccccccCcccceeeecC
Q 011015 397 GSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDG 443 (495)
Q Consensus 397 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 443 (495)
.++++|+.|++++|+ ++...- .+......+++++.+++..
T Consensus 300 ----~~l~~L~~L~l~~N~-l~~~~~--~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 300 ----EKMPDLLFLELNGNR-FSEEDD--VVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp ----HHCTTCCEEECTTSB-SCTTSH--HHHHHHHHHHHHTCCEECC
T ss_pred ----hcCCCceEEEccCCc-CCcchh--HHHHHHHHhhhcCcchhhh
Confidence 246888888888887 554330 0001122355666555554
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-16 Score=146.74 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=28.5
Q ss_pred CCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-CCCCCccceeecccc
Q 011015 317 PPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELM 378 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 378 (495)
.+++|+.|++++|.... +++..+..+++|+.|++++|.+....+. +..+++|+.|+++++
T Consensus 155 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 34444555554444444 4333444555555555555544433222 445555555555533
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.2e-16 Score=142.28 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=41.7
Q ss_pred CcceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCC-ccccccccccccCccccccc
Q 011015 160 HLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEG-TSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~-~~~~~~~~~~i~~l~~L~~L 236 (495)
+|++|++++|. +..+|. .+..+++|++|++++|..+..++. .+..+++|++|++++ |.+....+..+..+++|+.|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666 444443 455666666666666643444443 455666666666665 43322222334444444444
Q ss_pred CeEEe
Q 011015 237 TKFVV 241 (495)
Q Consensus 237 ~l~~~ 241 (495)
++..|
T Consensus 111 ~l~~n 115 (239)
T 2xwt_C 111 GIFNT 115 (239)
T ss_dssp EEEEE
T ss_pred eCCCC
Confidence 44443
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=8.8e-17 Score=144.90 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCC-CCcccccc-hhhhc
Q 011015 105 RRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCG-QTEIEKLP-ETLCE 181 (495)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~ 181 (495)
+.+++|++++|.+ ....+..|..+++|++|+++ ++.. +..++ ..+.++++|++|++++ |. +..+| ..+..
T Consensus 31 ~~l~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~-~n~~--l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHL---RTIPSHAFSNLPNISRIYVS-IDVT--LQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCC---SEECTTTTTTCTTCCEEEEE-CCSS--CCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEEC
T ss_pred CcccEEEEeCCcc---eEECHHHccCCCCCcEEeCC-CCCC--cceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCC
Confidence 3566666666663 23233345666666666666 3310 33333 3456666666666665 55 44444 34555
Q ss_pred cccCcEeecCCCcCCcccchhhccCCccc---EEecCCc
Q 011015 182 LYNLECLNVSGCWNLRELPRGIGKLRKLM---YLYNEGT 217 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~---~L~L~~~ 217 (495)
+++|++|++++|. +..+|. +..+++|+ +|++++|
T Consensus 104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred CCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCC
Confidence 6666666666665 444554 55555555 6666555
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=3e-17 Score=157.61 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=90.4
Q ss_pred EEeccCCCcchhhhcccccCCCccEEEEcCCccCccc-ccchHHhhcCC-eeeEEEccCccCccccccc-cccccCc---
Q 011015 85 LTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSS-KVLPQLFDKLT-CLRALTLETHCCFDFIQKI-PKNIEKL--- 158 (495)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~l-~~~~~~l--- 158 (495)
+..+.+......+.. ..++|++|++++|.+.... ..+...+..++ +|++|+++ +|. +... +..+..+
T Consensus 5 ls~n~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~---l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 5 LTLHPGSNPVEEFTS---IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-GNS---LGFKNSDELVQILAA 77 (362)
T ss_dssp CCCCTTCCHHHHHHT---SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC-SSC---GGGSCHHHHHHHHHT
T ss_pred cccccchHHHHHHHh---CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc-CCC---CCHHHHHHHHHHHhc
Confidence 444555443333333 2445888888888743221 11225677777 78888888 655 4333 4445543
Q ss_pred --CCcceEecCCCCcccccchhhhc----c-ccCcEeecCCCcCCcccch-hh----cc-CCcccEEecCCccccc----
Q 011015 159 --IHLKYLNLCGQTEIEKLPETLCE----L-YNLECLNVSGCWNLRELPR-GI----GK-LRKLMYLYNEGTSCLR---- 221 (495)
Q Consensus 159 --~~L~~L~l~~~~~~~~lp~~~~~----l-~~L~~L~L~~~~~~~~lp~-~l----~~-l~~L~~L~L~~~~~~~---- 221 (495)
++|++|++++|.+.+..+..+.. + ++|++|++++|. +...+. .+ .. .++|++|++++|.+..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 88888888888844444443333 3 788888888887 444332 22 33 3588888888886653
Q ss_pred cccccccCcc-cccccCeEEecCc
Q 011015 222 YLPVGIGELI-SLREVTKFVVGGG 244 (495)
Q Consensus 222 ~~~~~i~~l~-~L~~L~l~~~~~~ 244 (495)
.++..+..++ +|++|++..|.+.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHHhcCCccccEeeecCCCCc
Confidence 2233344444 7777777666544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=149.42 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCCCCcceEEEeeecCcCCCCCCc----hhhhccccceeeecCccCCCCCCC-CCCC---Cccceeeccc
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPIN----WIMSLTNLRDLSLSKWRNCEHLPP-LGKL---PSLEYLVIEL 377 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-~~~l---~~L~~L~l~~ 377 (495)
..+++|++|++++|.... + +. .+..+++|++|++++|.+.+..|. +..+ ++|++|++++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~--l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMET--P-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp TSSCCCCSCBCCSSCCCC--H-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred hcCCCCCEEECCCCCCCc--h-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 455667777777776654 3 22 245778888888888877766443 3332 4555555553
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.9e-16 Score=147.75 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=58.3
Q ss_pred CcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC--CCCCCccceeeccccccceEeCccccCCCCCCCC
Q 011015 320 NLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP--LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDG 397 (495)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 397 (495)
.++.|++++|.+.. +++..+ ...+|+.+++.++...+.+|. +..+++|++|+++++. ++.++.
T Consensus 155 ~l~~L~L~~N~i~~--i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----------- 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQE--IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----------- 219 (350)
T ss_dssp SCEEEECCSSCCCE--ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-----------
T ss_pred hhhhhccccccccC--CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-----------
Confidence 46667777776665 533333 445777777776655555554 6777777777777543 322221
Q ss_pred CccccCCccceeeecccccccccccccccccccccCcccceeeecC
Q 011015 398 SSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDG 443 (495)
Q Consensus 398 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 443 (495)
..+.+|+.|.+.++..++.++ .+..+++|+.+++.+
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP-------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLP-------TLEKLVALMEASLTY 255 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCC-------CTTTCCSCCEEECSC
T ss_pred ---hhhccchHhhhccCCCcCcCC-------CchhCcChhhCcCCC
Confidence 135566666666655554443 244667777777654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.2e-15 Score=142.69 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=146.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++++++.++.+..++ .+.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++ .+..+
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~----l~~L~~L~L~~n~i~---~-~~~-~~~l~~L~~L~L~-~n~---l~~~~-~~~~l 106 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQY----LNNLIGLELKDNQIT---D-LAP-LKNLTKITELELS-GNP---LKNVS-AIAGL 106 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGG----CTTCCEEECCSSCCC---C-CGG-GTTCCSCCEEECC-SCC---CSCCG-GGTTC
T ss_pred CcCEEEeeCCCccCch-hhhc----cCCCCEEEccCCcCC---C-Chh-HccCCCCCEEEcc-CCc---CCCch-hhcCC
Confidence 7889999999888665 4555 999999999999853 3 344 8899999999999 776 66665 58899
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|. +..++. +..+++|++|++++|. +..++. ++.+++|++|++++|.+.. ++. +..+++|+.|++
T Consensus 107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKA 180 (308)
T ss_dssp TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEEC
Confidence 999999999999 666765 8899999999999998 666665 8899999999999996543 444 788888998888
Q ss_pred EEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCC
Q 011015 239 FVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPP 318 (495)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (495)
..|.... +.. +..+++|+.|++++|.++. .. .+..+
T Consensus 181 ~~n~l~~-----~~~----------------------------l~~l~~L~~L~L~~N~l~~----------~~-~l~~l 216 (308)
T 1h6u_A 181 DDNKISD-----ISP----------------------------LASLPNLIEVHLKNNQISD----------VS-PLANT 216 (308)
T ss_dssp CSSCCCC-----CGG----------------------------GGGCTTCCEEECTTSCCCB----------CG-GGTTC
T ss_pred CCCccCc-----Chh----------------------------hcCCCCCCEEEccCCccCc----------cc-cccCC
Confidence 7765542 111 3345667777777776532 11 25667
Q ss_pred CCcceEEEeeecCcC
Q 011015 319 PNLKKLEIYDYRGRR 333 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~ 333 (495)
++|+.|++++|.+..
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 888888888887765
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=2.2e-17 Score=158.50 Aligned_cols=266 Identities=14% Similarity=0.041 Sum_probs=158.5
Q ss_pred EEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-----ccccCcC-CcceEecCCCCcccccchhhhcc
Q 011015 109 SLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-----KNIEKLI-HLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 109 ~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
.++++.|. +.+.+|..+...++|++|+++ ++. +...+ ..+..++ +|++|++++|.+....+..+..+
T Consensus 2 ~~~ls~n~---~~~~~~~~~~~~~~L~~L~Ls-~n~---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 2 NYKLTLHP---GSNPVEEFTSIPHGVTSLDLS-LNN---LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EEECCCCT---TCCHHHHHHTSCTTCCEEECT-TSC---GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccc---chHHHHHHHhCCCCceEEEcc-CCC---CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 35666776 556677766666779999999 766 55543 5677888 89999999999555556666665
Q ss_pred -----ccCcEeecCCCcCCcccchh----hccC-CcccEEecCCccccccccccc----cC-cccccccCeEEecCccCC
Q 011015 183 -----YNLECLNVSGCWNLRELPRG----IGKL-RKLMYLYNEGTSCLRYLPVGI----GE-LISLREVTKFVVGGGYDR 247 (495)
Q Consensus 183 -----~~L~~L~L~~~~~~~~lp~~----l~~l-~~L~~L~L~~~~~~~~~~~~i----~~-l~~L~~L~l~~~~~~~~~ 247 (495)
++|++|++++|......+.. +..+ ++|++|++++|.+....+..+ .. .++|++|+++.|.+..
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-- 152 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-- 152 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--
Confidence 99999999999833334443 4445 899999999997655444333 33 3578888777665542
Q ss_pred ccCccchhcccccCCceeeccCCCCChhhhHhhcccccc-ccceEEEEEecCCCCCCccchhHHHhhcCCCC-CCcceEE
Q 011015 248 ACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQK-YLVELGLYFDQAGRRENEEDEDERLLEALGPP-PNLKKLE 325 (495)
Q Consensus 248 ~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~ 325 (495)
... ......+...+ +|++|++++|.++. .....+...+..+ ++|+.|+
T Consensus 153 -~~~------------------------~~l~~~l~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~ 202 (362)
T 3goz_A 153 -KSS------------------------DELIQILAAIPANVNSLNLRGNNLAS-----KNCAELAKFLASIPASVTSLD 202 (362)
T ss_dssp -SCH------------------------HHHHHHHHTSCTTCCEEECTTSCGGG-----SCHHHHHHHHHTSCTTCCEEE
T ss_pred -HHH------------------------HHHHHHHhcCCccccEeeecCCCCch-----hhHHHHHHHHHhCCCCCCEEE
Confidence 111 11112222333 67777777776432 1122233344444 4777777
Q ss_pred EeeecCcCCCCC--Cchhhh-ccccceeeecCccCCCCCC-----CCCCCCccceeeccccccceEeCccccCCCCCCCC
Q 011015 326 IYDYRGRRNVVP--INWIMS-LTNLRDLSLSKWRNCEHLP-----PLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDG 397 (495)
Q Consensus 326 l~~~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 397 (495)
+++|.+...... +..+.. .++|+.|++++|.+.+..+ .+..+++|++|++++|. +..+........ .
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l----~ 277 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKAL----G 277 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHH----H
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHH----H
Confidence 777765541110 112223 3578888888876665433 14667788888887665 110111000000 0
Q ss_pred CccccCCccceeeecccccccc
Q 011015 398 SSVIAFPKLKLLDFYIMKELEE 419 (495)
Q Consensus 398 ~~~~~~~~L~~L~l~~~~~l~~ 419 (495)
.....+++|+.|+++++. +..
T Consensus 278 ~~~~~l~~L~~LdL~~N~-l~~ 298 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE-IHP 298 (362)
T ss_dssp TTSTTCCEEEEECTTSCB-CCG
T ss_pred HHhccCCceEEEecCCCc-CCC
Confidence 011257778888888776 544
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=3.9e-15 Score=135.10 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=47.0
Q ss_pred eeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEe
Q 011015 134 LRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLY 213 (495)
Q Consensus 134 L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 213 (495)
.++++++ ++. +..+|..+. +++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|+
T Consensus 16 ~~~l~~~-~~~---l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 16 KKEVDCQ-GKS---LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GTEEECT-TCC---CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CeEEecC-CCC---ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 4455555 443 444444333 4556666666653333333455556666666666552222233355556666666
Q ss_pred cCCccccccccccccCcccccccCe
Q 011015 214 NEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 214 L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
+++|.+....+..+..+++|+.|++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcccccChhHhcccCCCCEEEc
Confidence 6655433222233334444444433
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.3e-15 Score=127.57 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=115.7
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccc-cccccccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQ-KIPKNIEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~~~~~ 157 (495)
.++++++.++.+..++ .+.. +++|++|++++|.+. . ++ .+..+++|++|+++ ++. +. ..+..+..
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~----l~~L~~L~l~~n~~~---~-~~-~l~~l~~L~~L~l~-~n~---l~~~~~~~l~~ 110 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEY----AHNIKDLTINNIHAT---N-YN-PISGLSNLERLRIM-GKD---VTSDKIPNLSG 110 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGG----CTTCSEEEEESCCCS---C-CG-GGTTCTTCCEEEEE-CTT---CBGGGSCCCTT
T ss_pred CccEEeccCCCccChH-HHhc----CCCCCEEEccCCCCC---c-ch-hhhcCCCCCEEEeE-CCc---cCcccChhhcC
Confidence 7888999998888666 5555 899999999998642 2 33 47889999999998 665 44 35777888
Q ss_pred cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccC
Q 011015 158 LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVT 237 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~ 237 (495)
+++|++|++++|.+.+..|..++.+++|++|++++|..+..+| .+..+++|++|++++|.+.. ++ .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 9999999999998555677778899999999999987567776 68889999999999986543 44 678888888888
Q ss_pred eEEecCc
Q 011015 238 KFVVGGG 244 (495)
Q Consensus 238 l~~~~~~ 244 (495)
+.+|.+.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 8877653
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=6.1e-15 Score=136.72 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=62.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+++|+.|++++|.+.. ++. +..+++|++|+++ ++. +..++. +..+++|++|++++|. +..+|. +..++
T Consensus 45 l~~L~~L~l~~~~i~~----~~~-~~~l~~L~~L~L~-~n~---l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFLN-GNK---LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLK 112 (291)
T ss_dssp HHTCCEEECTTSCCCC----CTT-GGGCTTCCEEECC-SSC---CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCT
T ss_pred cCcccEEEccCCCccc----Chh-HhcCCCCCEEEcc-CCc---cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCC
Confidence 5556666666665322 222 5556666666666 444 444433 5566666666666665 444443 55566
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
+|++|++++|. +..+ +.+..+++|+.|++++|.+.. + ..+..+++|+.|++.
T Consensus 113 ~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEcc
Confidence 66666666665 4444 245556666666666653322 1 233444444444443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=6.6e-15 Score=133.56 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=97.2
Q ss_pred eEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCc
Q 011015 80 VLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKL 158 (495)
Q Consensus 80 ~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l 158 (495)
.+++++.++.+..+|..+ .+.++.|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..+..+
T Consensus 16 ~~~l~~~~~~l~~~p~~~------~~~l~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~-~n~---l~~~~~~~~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI------PADTEKLDLQSTGL---ATLSDATFRGLTKLTWLNLD-YNQ---LQTLSAGVFDDL 82 (251)
T ss_dssp GTEEECTTCCCSSCCSCC------CTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEECT-TSC---CCCCCTTTTTTC
T ss_pred CeEEecCCCCccccCCCC------CCCCCEEEccCCCc---CccCHhHhcCcccCCEEECC-CCc---CCccCHhHhccC
Confidence 345666666666555443 24677777777773 34345557777777888877 555 4444 4446777
Q ss_pred CCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCccccccc
Q 011015 159 IHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L 236 (495)
++|++|++++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+....+..++.+++|+.|
T Consensus 83 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 83 TELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 778888887777 44444 446677778888887776 5555544 5677777888887775544444457777777777
Q ss_pred CeEEecCc
Q 011015 237 TKFVVGGG 244 (495)
Q Consensus 237 ~l~~~~~~ 244 (495)
++..|.+.
T Consensus 161 ~L~~N~l~ 168 (251)
T 3m19_A 161 SLSTNQLQ 168 (251)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCC
Confidence 77666543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=2.5e-14 Score=136.42 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=66.9
Q ss_pred ccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEee-ecCcCCCCCCchhhhccccceeeecCccCCCCCCCCC
Q 011015 287 YLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYD-YRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLG 365 (495)
Q Consensus 287 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 365 (495)
.++.|+++.|.++ .++.......+|++|.+.+ +.... +|+..+..+++|+.|++++|.+... |. .
T Consensus 155 ~l~~L~L~~N~i~----------~i~~~~f~~~~L~~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~l~~l-p~-~ 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQ----------EIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSL-PS-Y 220 (350)
T ss_dssp SCEEEECCSSCCC----------EECTTSSTTEEEEEEECTTCTTCCC--CCTTTTTTEECCSEEECTTSCCCCC-CS-S
T ss_pred hhhhhcccccccc----------CCChhhccccchhHHhhccCCcccC--CCHHHhccCcccchhhcCCCCcCcc-Ch-h
Confidence 5667777777642 2333444456788888875 45555 7667789999999999999977653 33 2
Q ss_pred CCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecc
Q 011015 366 KLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYI 413 (495)
Q Consensus 366 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 413 (495)
.+.+|+.|.+.++..++.++. +..+++|+.+++.+
T Consensus 221 ~~~~L~~L~~l~~~~l~~lP~-------------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 GLENLKKLRARSTYNLKKLPT-------------LEKLVALMEASLTY 255 (350)
T ss_dssp SCTTCCEEECTTCTTCCCCCC-------------TTTCCSCCEEECSC
T ss_pred hhccchHhhhccCCCcCcCCC-------------chhCcChhhCcCCC
Confidence 355666666666665554442 12688999998764
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.1e-14 Score=126.73 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
+++|+.|++++|.+. . +| .+..+++|++|+++ ++. +..++ .+..+++|++|++++|.+.+..|..++.++
T Consensus 43 l~~L~~L~l~~n~i~---~-l~-~l~~l~~L~~L~l~-~n~---~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT---D-LT-GIEYAHNIKDLTIN-NIH---ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS---C-CT-TGGGCTTCSEEEEE-SCC---CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred cCCccEEeccCCCcc---C-hH-HHhcCCCCCEEEcc-CCC---CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 888999999999854 2 45 38889999999999 665 55554 688899999999999995555777889999
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
+|++|++++|......|..++.+++|++|++++|.....+| .+..+++|+.|++..|.+.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 99999999998555577889999999999999996455665 5788888888888766543
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=4.5e-15 Score=150.83 Aligned_cols=174 Identities=20% Similarity=0.184 Sum_probs=113.7
Q ss_pred hhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCC
Q 011015 128 FDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLR 207 (495)
Q Consensus 128 ~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 207 (495)
+..+++|+.|+++ ++. +..++ .+..+++|++|+|++|. +..++. +..+++|+.|+|++|. +..+| .+..++
T Consensus 39 ~~~L~~L~~L~l~-~n~---i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIAN-NSD---IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCT-TCC---CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred hhcCCCCCEEECc-CCC---CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 4566777777777 555 55554 46777777777777777 555554 6777777777777776 55554 567777
Q ss_pred cccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccc
Q 011015 208 KLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKY 287 (495)
Q Consensus 208 ~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 287 (495)
+|+.|+|++|.+.. + ..+..+++|+.|++..|.+.. + ..+..+++
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-----l----------------------------~~l~~l~~ 154 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-----I----------------------------TVLSRLTK 154 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-----C----------------------------GGGGSCTT
T ss_pred CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-----c----------------------------hhhcccCC
Confidence 77777777775432 2 335566666666665443321 0 12345567
Q ss_pred cceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCC
Q 011015 288 LVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEH 360 (495)
Q Consensus 288 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 360 (495)
|+.|+++.|.++. ... +..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+...
T Consensus 155 L~~L~Ls~N~l~~----------~~~-l~~l~~L~~L~Ls~N~i~~--l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 155 LDTLSLEDNQISD----------IVP-LAGLTKLQNLYLSKNHISD--L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSEEECCSSCCCC----------CGG-GTTCTTCCEEECCSSCCCB--C--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCEEECcCCcCCC----------chh-hccCCCCCEEECcCCCCCC--C--hHHccCCCCCEEEccCCcCcCC
Confidence 7777777776532 111 5667888888888887776 4 3477888888888888876653
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.1e-14 Score=145.95 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=125.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
++.|+.|++++|.+.. ++. +..+++|++|+|+ ++. +..++. +..+++|++|+|++|. +..+| .+..++
T Consensus 42 L~~L~~L~l~~n~i~~----l~~-l~~l~~L~~L~Ls-~N~---l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS----VQG-IQYLPNVTKLFLN-GNK---LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCCCCC----CTT-GGGCTTCCEEECT-TSC---CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCT
T ss_pred CCCCCEEECcCCCCCC----ChH-HccCCCCCEEEee-CCC---CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCC
Confidence 7888888888887533 333 7788889999998 666 555654 7888889999999888 66665 578888
Q ss_pred cCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCc
Q 011015 184 NLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKC 263 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l 263 (495)
+|++|+|++|. +..++ .+..+++|+.|+|++|.+... ..+..+++|+.|++..|.+.. .
T Consensus 110 ~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--~--------------- 168 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--I--------------- 168 (605)
T ss_dssp TCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC--C---------------
T ss_pred CCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC--c---------------
Confidence 89999999887 55554 578888999999988865443 557788888888777654432 0
Q ss_pred eeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcC
Q 011015 264 SIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRR 333 (495)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 333 (495)
..+..+++|+.|+++.|.++. ...+..+++|+.|++++|.+..
T Consensus 169 ----------------~~l~~l~~L~~L~Ls~N~i~~-----------l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 ----------------VPLAGLTKLQNLYLSKNHISD-----------LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ----------------GGGTTCTTCCEEECCSSCCCB-----------CGGGTTCTTCSEEECCSEEEEC
T ss_pred ----------------hhhccCCCCCEEECcCCCCCC-----------ChHHccCCCCCEEEccCCcCcC
Confidence 003445678888888887532 2356778999999999998776
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=5.3e-14 Score=130.34 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=118.1
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++.+++.++.+..++ .+.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++ .+..+
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~----l~~L~~L~L~~n~l~---~-~~~-l~~l~~L~~L~l~-~n~---l~~~~-~l~~l 111 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQY----LPNVTKLFLNGNKLT---D-IKP-LANLKNLGWLFLD-ENK---VKDLS-SLKDL 111 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGG----CTTCCEEECCSSCCC---C-CGG-GTTCTTCCEEECC-SSC---CCCGG-GGTTC
T ss_pred cccEEEccCCCcccCh-hHhc----CCCCCEEEccCCccC---C-Ccc-cccCCCCCEEECC-CCc---CCCCh-hhccC
Confidence 7889999999887664 3554 999999999999853 3 333 8899999999999 766 66655 48999
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|. +..++ .+..+++|++|++++|. +..+ ..+..+++|++|++++|.+... +. +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEEC
T ss_pred CCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEEC
Confidence 999999999999 66664 58899999999999998 6666 5789999999999999966543 33 888899999988
Q ss_pred EEecCc
Q 011015 239 FVVGGG 244 (495)
Q Consensus 239 ~~~~~~ 244 (495)
.+|.+.
T Consensus 186 ~~N~i~ 191 (291)
T 1h6t_A 186 SKNHIS 191 (291)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 776543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=9e-14 Score=122.17 Aligned_cols=67 Identities=31% Similarity=0.492 Sum_probs=37.4
Q ss_pred cccccccccCcCCcceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCcc
Q 011015 148 IQKIPKNIEKLIHLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTS 218 (495)
Q Consensus 148 ~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~ 218 (495)
+..+|..+ .++|++|++++|. +..++. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc
Confidence 44444332 3466666666666 334433 34566666666666665 4444433 4566666666666663
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=2.7e-14 Score=127.41 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=116.6
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcC
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLI 159 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~ 159 (495)
..++..++.+..+|..+ .++|++|++++|. +....|..|..+++|++|+++ ++. +..++ ..+..++
T Consensus 22 ~~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~-~N~---l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI------PTNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLG-SNQ---LGALPVGVFDSLT 88 (229)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECC-SSC---CCCCCTTTTTTCT
T ss_pred CEeEccCCCcCccCCCC------CCCCCEEEcCCCc---cCccCHHHhhCccCCcEEECC-CCC---CCCcChhhcccCC
Confidence 35666666776666544 4689999999998 445456778889999999999 766 66665 4468899
Q ss_pred CcceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 160 HLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
+|++|++++|. +..+|. .+..+++|++|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 89 ~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 99999999998 555554 46789999999999998 7788988999999999999999665444456788889998888
Q ss_pred EEecCc
Q 011015 239 FVVGGG 244 (495)
Q Consensus 239 ~~~~~~ 244 (495)
.+|.+.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 877654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=2.9e-14 Score=126.31 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=120.1
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcC
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLI 159 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~ 159 (495)
+.++++++.+..+|..+. +.++.|++++|.+..+. .+..|..+++|++|+++ ++. +..++ ..|..++
T Consensus 14 ~~l~~s~n~l~~iP~~~~------~~~~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L~-~N~---i~~i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP------QYTAELRLNNNEFTVLE--ATGIFKKLPQLRKINFS-NNK---ITDIEEGAFEGAS 81 (220)
T ss_dssp TEEECCSSCCSSCCSCCC------TTCSEEECCSSCCCEEC--CCCCGGGCTTCCEEECC-SSC---CCEECTTTTTTCT
T ss_pred CEeEeCCCCcccCccCCC------CCCCEEEcCCCcCCccC--chhhhccCCCCCEEECC-CCc---CCEECHHHhCCCC
Confidence 477888888887776543 35689999999853321 13457889999999999 766 66654 4789999
Q ss_pred CcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 160 HLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
+|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+....|..+..+++|+.|++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 99999999999444444568899999999999998444446778899999999999998777778889999999999998
Q ss_pred EecCcc
Q 011015 240 VVGGGY 245 (495)
Q Consensus 240 ~~~~~~ 245 (495)
+|.+..
T Consensus 162 ~N~l~c 167 (220)
T 2v70_A 162 ANPFNC 167 (220)
T ss_dssp SCCEEC
T ss_pred CcCCcC
Confidence 887654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=4.1e-14 Score=125.37 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=109.0
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCC
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIH 160 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~ 160 (495)
.++..++.+..+|..+ .+.++.|++++|.+ ....+..|..+++|++|+++ ++. +..+ |..|.++++
T Consensus 15 ~v~c~~~~l~~iP~~l------~~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls-~N~---i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL------PETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLS-NNQ---ISELAPDAFQGLRS 81 (220)
T ss_dssp EEECTTSCCSSCCSSC------CTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECC-SSC---CCEECTTTTTTCSS
T ss_pred EEEcCCCCcCcCCCcc------CcCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECC-CCc---CCCcCHHHhhCCcC
Confidence 4555566666566443 35788888888874 34345567888888888888 666 5554 677888888
Q ss_pred cceEecCCCCcccccchh-hhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeE
Q 011015 161 LKYLNLCGQTEIEKLPET-LCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKF 239 (495)
Q Consensus 161 L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~ 239 (495)
|++|++++|. +..+|.. +..+++|++|+|++|......|..+..+++|++|++++|.+....+..+..+++|+.|++.
T Consensus 82 L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 82 LNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 8888888888 6666654 5778888888888888333345668888888888888887665555567888888888887
Q ss_pred EecCcc
Q 011015 240 VVGGGY 245 (495)
Q Consensus 240 ~~~~~~ 245 (495)
+|.+.-
T Consensus 161 ~N~~~c 166 (220)
T 2v9t_B 161 QNPFIC 166 (220)
T ss_dssp SSCEEC
T ss_pred CCCcCC
Confidence 776543
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=8.4e-14 Score=117.86 Aligned_cols=133 Identities=21% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
.++|+.|++++|.+.. ..+|..+..+++|++|+++ ++. +..+ ..+..+++|++|++++|.+.+.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~--~~i~~~~~~l~~L~~L~l~-~n~---l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLI-NVG---LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBT--TBCSSCCGGGGGCCEEEEE-SSC---CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCCh--hhHHHHHHhCCCCCEEeCc-CCC---CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 5789999999988421 3466667888999999998 666 5555 6688899999999999984444777777799
Q ss_pred cCcEeecCCCcCCcccc--hhhccCCcccEEecCCcccccccc---ccccCcccccccCeEEecCc
Q 011015 184 NLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSCLRYLP---VGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~~~---~~i~~l~~L~~L~l~~~~~~ 244 (495)
+|++|++++|. +..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++..|...
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999997 66665 678889999999999996654333 36788899999998887654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=2.3e-13 Score=124.03 Aligned_cols=145 Identities=19% Similarity=0.149 Sum_probs=117.8
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKL 158 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l 158 (495)
.++.+++.++.+..++ .+.. +++|++|++++|.+. . ++. +..+++|++|+++ ++. +..++.. ..
T Consensus 42 ~L~~L~l~~n~i~~l~-~l~~----l~~L~~L~L~~N~i~---~-~~~-l~~l~~L~~L~L~-~N~---l~~l~~~-~~- 105 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA-GMQF----FTNLKELHLSHNQIS---D-LSP-LKDLTKLEELSVN-RNR---LKNLNGI-PS- 105 (263)
T ss_dssp TCSEEECTTSCCCCCT-TGGG----CTTCCEEECCSSCCC---C-CGG-GTTCSSCCEEECC-SSC---CSCCTTC-CC-
T ss_pred cCcEEECcCCCcccch-HHhh----CCCCCEEECCCCccC---C-Chh-hccCCCCCEEECC-CCc---cCCcCcc-cc-
Confidence 7889999999888665 4555 999999999999853 3 344 8899999999999 776 6666543 33
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCe
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTK 238 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l 238 (495)
++|++|++++|. +..++ .+..+++|++|++++|. +..++ .++.+++|+.|++++|.+... ..+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 899999999998 66665 48899999999999998 66675 688999999999999976554 66888999999999
Q ss_pred EEecCcc
Q 011015 239 FVVGGGY 245 (495)
Q Consensus 239 ~~~~~~~ 245 (495)
.+|.+..
T Consensus 180 ~~N~~~~ 186 (263)
T 1xeu_A 180 TGQKCVN 186 (263)
T ss_dssp EEEEEEC
T ss_pred CCCcccC
Confidence 9988764
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=5.3e-14 Score=128.28 Aligned_cols=166 Identities=19% Similarity=0.140 Sum_probs=93.1
Q ss_pred CCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCccc
Q 011015 131 LTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLM 210 (495)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 210 (495)
+..+..++++ .+. +..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|+
T Consensus 18 l~~l~~l~l~-~~~---i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLG-KQS---VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHT-CSC---TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCC
T ss_pred HHHHHHHHhc-CCC---ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCC
Confidence 4444455555 443 44444 35556666666666665 55555 45566666666666665 444544 56666666
Q ss_pred EEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccce
Q 011015 211 YLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVE 290 (495)
Q Consensus 211 ~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 290 (495)
+|++++|.+.. +|. +.. ++|+.
T Consensus 89 ~L~L~~N~l~~-l~~-~~~--------------------------------------------------------~~L~~ 110 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNG-IPS--------------------------------------------------------ACLSR 110 (263)
T ss_dssp EEECCSSCCSC-CTT-CCC--------------------------------------------------------SSCCE
T ss_pred EEECCCCccCC-cCc-ccc--------------------------------------------------------CcccE
Confidence 66666663211 111 000 23444
Q ss_pred EEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCCCCCCCcc
Q 011015 291 LGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSL 370 (495)
Q Consensus 291 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L 370 (495)
|++++|.++. ...+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. +.+..+++|
T Consensus 111 L~L~~N~l~~-----------~~~l~~l~~L~~L~Ls~N~i~~--~--~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 111 LFLDNNELRD-----------TDSLIHLKNLEILSIRNNKLKS--I--VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKV 174 (263)
T ss_dssp EECCSSCCSB-----------SGGGTTCTTCCEEECTTSCCCB--C--GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCC
T ss_pred EEccCCccCC-----------ChhhcCcccccEEECCCCcCCC--C--hHHccCCCCCEEECCCCcCcch-HHhccCCCC
Confidence 4444444321 1224445666666666666655 4 2566777888888887766655 557777888
Q ss_pred ceeeccccc
Q 011015 371 EYLVIELMN 379 (495)
Q Consensus 371 ~~L~l~~~~ 379 (495)
+.|+++++.
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 888887654
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=6.3e-14 Score=116.04 Aligned_cols=128 Identities=22% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELY 183 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 183 (495)
.++++.|++++|.+.. +.+|..+..+++|++|+++ ++. +..+ ..+..+++|++|++++|.+.+.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~-~n~---l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTI-NVG---LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBT--TBCCSCCTTCTTCCEEECT-TSC---CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCCh--hHHHHHHhhcCCCcEEECc-CCC---CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 5778999999988421 3466667888999999998 666 5555 6688889999999999984444787777899
Q ss_pred cCcEeecCCCcCCcccc--hhhccCCcccEEecCCcccccccc---ccccCcccccccCeE
Q 011015 184 NLECLNVSGCWNLRELP--RGIGKLRKLMYLYNEGTSCLRYLP---VGIGELISLREVTKF 239 (495)
Q Consensus 184 ~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~~~---~~i~~l~~L~~L~l~ 239 (495)
+|++|++++|. +..+| ..++.+++|++|++++|.+....+ ..+..+++|+.|++.
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999998 66554 678889999999999996644333 357778888887653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1e-13 Score=139.40 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=99.4
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccC
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNL 185 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 185 (495)
+++.|++++|.+. + +|..+ +++|++|+++ +|. +..+| ..+++|++|++++|. +..+|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~---~-lp~~l--~~~L~~L~Ls-~N~---l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLS---S-LPDNL--PPQITVLEIT-QNA---LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCS---C-CCSCC--CTTCSEEECC-SSC---CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeCCCCCC---c-cCHhH--cCCCCEEECc-CCC---Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 6666666666632 2 33322 2556666666 555 44555 345666666776666 444665 433 66
Q ss_pred cEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCcee
Q 011015 186 ECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSI 265 (495)
Q Consensus 186 ~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~ 265 (495)
++|++++|. +..+|. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+..
T Consensus 123 ~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~-------------------- 174 (571)
T 3cvr_A 123 KHLDVDNNQ-LTMLPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTF-------------------- 174 (571)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC--------------------
T ss_pred CEEECCCCc-CCCCCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCC--------------------
Confidence 666666665 444555 4566666666666443 2443 34555555555443321
Q ss_pred eccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCC-----CCCCcceEEEeeecCcCCCCCCch
Q 011015 266 RGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALG-----PPPNLKKLEIYDYRGRRNVVPINW 340 (495)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~ 340 (495)
.+ . +. ++|+.|++++|.++. ++. +. ..+.|+.|++++|.+.. + |..
T Consensus 175 -----lp-------~-l~--~~L~~L~Ls~N~L~~----------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~--l-p~~ 225 (571)
T 3cvr_A 175 -----LP-------E-LP--ESLEALDVSTNLLES----------LPA-VPVRNHHSEETEIFFRCRENRITH--I-PEN 225 (571)
T ss_dssp -----CC-------C-CC--TTCCEEECCSSCCSS----------CCC-CC--------CCEEEECCSSCCCC--C-CGG
T ss_pred -----cc-------h-hh--CCCCEEECcCCCCCc----------hhh-HHHhhhcccccceEEecCCCccee--c-CHH
Confidence 00 0 11 356666666665431 111 11 11223777777776665 6 555
Q ss_pred hhhccccceeeecCccCCCCCC
Q 011015 341 IMSLTNLRDLSLSKWRNCEHLP 362 (495)
Q Consensus 341 ~~~~~~L~~L~l~~~~~~~~~~ 362 (495)
+..+++|+.|++++|.+.+..|
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCH
Confidence 5567777777777776665444
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.8e-15 Score=151.50 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=44.5
Q ss_pred cccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCC-CchhhhccccceeeecCccCCCCCC
Q 011015 284 KQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVP-INWIMSLTNLRDLSLSKWRNCEHLP 362 (495)
Q Consensus 284 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~ 362 (495)
.+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.. ++ |..+..+++|+.|++++|.+.+..+
T Consensus 484 ~l~~L~~L~Ls~N~l~~----------lp-~l~~l~~L~~L~Ls~N~l~~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN----------VD-GVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSSCCCC----------CG-GGTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEECCCCCCCC----------Cc-ccCCCCCCcEEECCCCCCCC--CCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 34455555555555321 12 44556666666666666655 43 5666677777777777776665544
Q ss_pred CC----CCCCccceee
Q 011015 363 PL----GKLPSLEYLV 374 (495)
Q Consensus 363 ~~----~~l~~L~~L~ 374 (495)
.. ..+|+|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 32 2255666554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.6e-13 Score=138.02 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred eeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEE
Q 011015 133 CLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYL 212 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 212 (495)
+|++|+++ ++. +..+|..+ +++|++|++++|. +..+| ..+++|++|++++|. +..+|. +.. +|++|
T Consensus 60 ~L~~L~Ls-~n~---L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLN-RLN---LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECC-SSC---CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEE
T ss_pred CccEEEeC-CCC---CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEE
Confidence 77888887 555 55566554 3678888888887 55777 446778888888876 555776 544 78888
Q ss_pred ecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEE
Q 011015 213 YNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELG 292 (495)
Q Consensus 213 ~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 292 (495)
++++|.+.. +|. .+++|+.|++.+|.+.. ++. .+++|+.|+
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp~----------~l~~L~~L~ 166 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LPE----------LPTSLEVLS 166 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CCC----------CCTTCCEEE
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CCC----------cCCCcCEEE
Confidence 888775443 454 45666666665543321 000 124566677
Q ss_pred EEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhcccc-------ceeeecCccCCCCCCC-C
Q 011015 293 LYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNL-------RDLSLSKWRNCEHLPP-L 364 (495)
Q Consensus 293 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~-~ 364 (495)
+++|.++. ++. +. ++|+.|++++|.+.. + |. +.. +| +.|++++|.+.. +|. +
T Consensus 167 Ls~N~L~~----------lp~-l~--~~L~~L~Ls~N~L~~--l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l 226 (571)
T 3cvr_A 167 VRNNQLTF----------LPE-LP--ESLEALDVSTNLLES--L-PA-VPV--RNHHSEETEIFFRCRENRITH-IPENI 226 (571)
T ss_dssp CCSSCCSC----------CCC-CC--TTCCEEECCSSCCSS--C-CC-CC----------CCEEEECCSSCCCC-CCGGG
T ss_pred CCCCCCCC----------cch-hh--CCCCEEECcCCCCCc--h-hh-HHH--hhhcccccceEEecCCCccee-cCHHH
Confidence 77666432 122 22 567777777766665 5 33 322 45 666666665553 333 5
Q ss_pred CCCCccceeeccccc
Q 011015 365 GKLPSLEYLVIELMN 379 (495)
Q Consensus 365 ~~l~~L~~L~l~~~~ 379 (495)
..+++|+.|++++|.
T Consensus 227 ~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 227 LSLDPTCTIILEDNP 241 (571)
T ss_dssp GGSCTTEEEECCSSS
T ss_pred hcCCCCCEEEeeCCc
Confidence 556666666666443
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=3.9e-13 Score=118.07 Aligned_cols=130 Identities=26% Similarity=0.275 Sum_probs=77.9
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccc-cccCcCCcceEecCCCCcccccch-hhhc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPK-NIEKLIHLKYLNLCGQTEIEKLPE-TLCE 181 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 181 (495)
.++|++|++++|.+ ....+..|..+++|++|+++ ++. +..++. .+..+++|++|++++|. +..+|. .+..
T Consensus 27 ~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~-~n~---l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSL---KSLPNGVFDELTSLTQLYLG-GNK---LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECC-SSC---CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCCcEEEcCCCcc---CcCChhhhcccccCcEEECC-CCc---cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcC
Confidence 44667777777763 23334445667777777777 555 444433 35667777777777776 444443 3566
Q ss_pred cccCcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccccCeEEec
Q 011015 182 LYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVG 242 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~ 242 (495)
+++|++|++++|. +..+|.. +..+++|++|++++|.+....+..+..+++|+.|++.+|.
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 7777777777776 4444433 5667777777777775543333345666666666665553
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.4e-13 Score=114.10 Aligned_cols=131 Identities=24% Similarity=0.202 Sum_probs=108.4
Q ss_pred ceEEEEEEeccCC--CcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc-ccccc
Q 011015 79 KVLHLMLTVDVGT--SVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK-IPKNI 155 (495)
Q Consensus 79 ~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~~ 155 (495)
.++++++.++.+. .++..+.. +++|++|++++|.+..+ ..+..+++|++|+++ +|. +.. +|..+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~----l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls-~N~---l~~~~~~~~ 91 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAE----FVNLEFLSLINVGLISV-----SNLPKLPKLKKLELS-ENR---IFGGLDMLA 91 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGG----GGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEE-SCC---CCSCCCHHH
T ss_pred cCCEEECCCCCCChhhHHHHHHh----CCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECc-CCc---CchHHHHHH
Confidence 7899999999987 56655555 99999999999996443 447889999999999 776 555 67777
Q ss_pred cCcCCcceEecCCCCcccccc--hhhhccccCcEeecCCCcCCcccch----hhccCCcccEEecCCccccccccc
Q 011015 156 EKLIHLKYLNLCGQTEIEKLP--ETLCELYNLECLNVSGCWNLRELPR----GIGKLRKLMYLYNEGTSCLRYLPV 225 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~L~~~~~~~~~~~ 225 (495)
..+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|.. ...|.
T Consensus 92 ~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 92 EKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp HHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred hhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 889999999999999 67665 678899999999999998 667776 788999999999999953 34443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=2.2e-13 Score=130.46 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=36.0
Q ss_pred cCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchhhccCC
Q 011015 130 KLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGIGKLR 207 (495)
Q Consensus 130 ~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 207 (495)
.+++|++|+++ ++. +..++ ..|..+++|++|+|++|. +..++ ..+..+++|++|+|++|......|..+..++
T Consensus 62 ~l~~L~~L~L~-~N~---i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 62 RLTNLHSLLLS-HNH---LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp CCTTCCEEECC-SSC---CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cccccCEEECC-CCc---CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 44445555554 333 33332 234444455555555544 23222 2344444555555554442222233344444
Q ss_pred cccEEecCCc
Q 011015 208 KLMYLYNEGT 217 (495)
Q Consensus 208 ~L~~L~L~~~ 217 (495)
+|+.|+|++|
T Consensus 137 ~L~~L~L~~N 146 (361)
T 2xot_A 137 QLQKLYLSQN 146 (361)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 5555555444
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=1.2e-12 Score=111.50 Aligned_cols=130 Identities=22% Similarity=0.147 Sum_probs=101.2
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhh-hc
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETL-CE 181 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~ 181 (495)
.+++|+.|++++|.+.. +|......++|++|+++ ++. +..+ ..+..+++|++|++++|. +..+|..+ ..
T Consensus 17 ~~~~L~~L~l~~n~l~~----i~~~~~~~~~L~~L~Ls-~N~---l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV----IENLGATLDQFDAIDFS-DNE---IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQA 86 (176)
T ss_dssp CTTSCEEEECTTSCCCS----CCCGGGGTTCCSEEECC-SSC---CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred CcCCceEEEeeCCCCch----hHHhhhcCCCCCEEECC-CCC---CCcc-cccccCCCCCEEECCCCc-ccccCcchhhc
Confidence 38899999999998543 34433334599999999 666 5555 568889999999999998 66676544 88
Q ss_pred cccCcEeecCCCcCCcccch--hhccCCcccEEecCCcccccccccc----ccCcccccccCeEEecCc
Q 011015 182 LYNLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGTSCLRYLPVG----IGELISLREVTKFVVGGG 244 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~----i~~l~~L~~L~l~~~~~~ 244 (495)
+++|++|++++|. +..+|. .+..+++|+.|++++|.+. ..|.. +..+++|+.|++..+...
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999998 677776 7888999999999999654 45553 788888999888877543
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1e-12 Score=116.26 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=108.6
Q ss_pred ceEEEEEEeccCCCcch-hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccc-cc
Q 011015 79 KVLHLMLTVDVGTSVPI-AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN-IE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~-~~ 156 (495)
.++.|++.+|.+..++. .+.. +++|+.|++++|. +....|..|..+++|++|+++ ++. +..+|.. +.
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~----l~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls-~N~---l~~l~~~~f~ 101 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSP----YKKLRRIDLSNNQ---ISELAPDAFQGLRSLNSLVLY-GNK---ITELPKSLFE 101 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTT----CTTCCEEECCSSC---CCEECTTTTTTCSSCCEEECC-SSC---CCCCCTTTTT
T ss_pred CCCEEECCCCcCCCcCHhHhhC----CCCCCEEECCCCc---CCCcCHHHhhCCcCCCEEECC-CCc---CCccCHhHcc
Confidence 78999999999987664 4444 9999999999998 445557789999999999999 777 6677654 78
Q ss_pred CcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 219 (495)
.+++|++|++++|.+.+..|..+..+++|++|+|++|. +..++. .+..+++|+.|++++|.+
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 89999999999999555556778999999999999998 666554 588999999999999965
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=7.9e-13 Score=126.57 Aligned_cols=154 Identities=17% Similarity=0.114 Sum_probs=107.3
Q ss_pred ceEEEEEEeccCCCcchhhh--cccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccc
Q 011015 79 KVLHLMLTVDVGTSVPIAIW--NNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNI 155 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~ 155 (495)
.++.|++++|.+..++.... . +++|++|++++|.+ ....+..|..+++|++|+++ ++. +..++ ..|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~----l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls-~N~---l~~~~~~~~ 108 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTR----LTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDLS-SNH---LHTLDEFLF 108 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSC----CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC-SSC---CCEECTTTT
T ss_pred CCCEEECCCCCCCccChhhhhhc----ccccCEEECCCCcC---CccChhhccCCCCCCEEECC-CCc---CCcCCHHHh
Confidence 56788888888876554432 4 88888888888874 44445567888888888888 666 55554 457
Q ss_pred cCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhh----ccCCcccEEecCCccccccccccccCcc
Q 011015 156 EKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGI----GKLRKLMYLYNEGTSCLRYLPVGIGELI 231 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l----~~l~~L~~L~L~~~~~~~~~~~~i~~l~ 231 (495)
..+++|++|+|++|.+....|..+..+++|++|+|++|. +..+|..+ ..+++|+.|+|++|.+....+..+..++
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 788888888888888444446677888888888888887 66677654 5688888888888865433334455555
Q ss_pred c--ccccCeEEecCc
Q 011015 232 S--LREVTKFVVGGG 244 (495)
Q Consensus 232 ~--L~~L~l~~~~~~ 244 (495)
. ++.|++.+|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 5 366666666554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=115.19 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=108.2
Q ss_pred ceEEEEEEeccCCCcch--hhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccc
Q 011015 79 KVLHLMLTVDVGTSVPI--AIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNI 155 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~ 155 (495)
.++.+++++|.+..++. .+.. +++|++|++++|.+ ....+..|..+++|++|+++ ++. +..+ +..+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~----l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls-~N~---l~~~~~~~~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKK----LPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLT-SNR---LENVQHKMF 101 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGG----CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC-SSC---CCCCCGGGG
T ss_pred CCCEEEcCCCcCCccCchhhhcc----CCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECC-CCc---cCccCHhHh
Confidence 56799999999987532 2444 99999999999984 45456679999999999999 776 5555 4558
Q ss_pred cCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccc
Q 011015 156 EKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLR 221 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 221 (495)
..+++|++|++++|.+.+..|..+..+++|++|+|++|......|..+..+++|+.|++++|.+..
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 999999999999999555557789999999999999998444447789999999999999996543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=5.1e-13 Score=110.50 Aligned_cols=123 Identities=25% Similarity=0.242 Sum_probs=102.7
Q ss_pred ceEEEEEEeccCC--CcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc-ccccc
Q 011015 79 KVLHLMLTVDVGT--SVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK-IPKNI 155 (495)
Q Consensus 79 ~~~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~~~ 155 (495)
+++++++.++.+. .++..+.. +++|++|++++|.+..+ ..+..+++|++|+++ ++. +.. +|..+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls-~n~---i~~~~~~~~ 84 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDE----FEELEFLSTINVGLTSI-----ANLPKLNKLKKLELS-DNR---VSGGLEVLA 84 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTT----CTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECC-SSC---CCSCTHHHH
T ss_pred cCeEEEccCCcCChhHHHHHHhh----cCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECC-CCc---ccchHHHHh
Confidence 7899999999887 46655555 99999999999986443 448889999999999 776 555 77778
Q ss_pred cCcCCcceEecCCCCcccccc--hhhhccccCcEeecCCCcCCcccch----hhccCCcccEEecCC
Q 011015 156 EKLIHLKYLNLCGQTEIEKLP--ETLCELYNLECLNVSGCWNLRELPR----GIGKLRKLMYLYNEG 216 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~~lp~----~l~~l~~L~~L~L~~ 216 (495)
..+++|++|++++|. +..+| ..++.+++|++|++++|. +...|. .+..+++|+.|++++
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 889999999999999 66554 778999999999999998 666665 688999999999863
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=2.3e-12 Score=114.88 Aligned_cols=129 Identities=23% Similarity=0.330 Sum_probs=109.1
Q ss_pred ceEEEEEEeccCCCcc-hhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-cccc
Q 011015 79 KVLHLMLTVDVGTSVP-IAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIE 156 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~ 156 (495)
+++.+++++|.+..++ ..+.. +++|++|++++|.+ ....+..|..+++|++|+++ ++. +..++ ..+.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~----l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls-~N~---l~~l~~~~~~ 109 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDS----LINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLG-TNQ---LTVLPSAVFD 109 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECC-SSC---CCCCCTTTTT
T ss_pred CCCEEEcCCCccCccCHHHhhC----ccCCcEEECCCCCC---CCcChhhcccCCCcCEEECC-CCc---CCccChhHhC
Confidence 8899999999998764 44555 99999999999995 44345667899999999999 777 66665 4478
Q ss_pred CcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccch-hhccCCcccEEecCCcccc
Q 011015 157 KLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSCL 220 (495)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~ 220 (495)
.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|. .+..+++|+.|++++|.+.
T Consensus 110 ~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999999999 77999999999999999999998 666664 5889999999999999654
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=5.2e-12 Score=119.31 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=64.7
Q ss_pred hccccceeeecCccCCCCCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccc-eeeeccccccccc
Q 011015 343 SLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLK-LLDFYIMKELEEW 420 (495)
Q Consensus 343 ~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~ 420 (495)
.+++|+.+++.+|.+....+. +.++++|+++++.+. ++.++..... +|++|+ .+++.+ +++.+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-----------~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-----------NCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------TCTTCCEEEEECT--TCCEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------CChhccEEEEEcc--cceEE
Confidence 467777777777655543333 777777777777653 5555443322 577777 777665 24443
Q ss_pred ccccccccccccCcccceeeecCCcCccCCC-cCCCCCCCccEEEE
Q 011015 421 DFGTAIKGEIIIMPRLSSLSIDGCPKLKALP-DHLLQKTTLQKLWI 465 (495)
Q Consensus 421 ~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~-~~~~~l~~L~~L~l 465 (495)
. +.++..+++|++|++.++. +..++ ..+.++++|+.|..
T Consensus 289 ~-----~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 E-----FGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp C-----TTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred c-----hhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 3 2456778888888887755 44444 45777888887763
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.6e-13 Score=141.39 Aligned_cols=112 Identities=28% Similarity=0.266 Sum_probs=50.1
Q ss_pred hHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhc
Q 011015 125 PQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIG 204 (495)
Q Consensus 125 ~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~ 204 (495)
++.|..++.|++|+|+ ++. +..+|..+..+++|++|+|++|. +..+|..++.+++|++|+|++|. +..+|..++
T Consensus 217 ~~~~~~l~~L~~L~Ls-~n~---l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLS-NLQ---IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECT-TSC---CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGG
T ss_pred hhhhccCCCCcEEECC-CCC---CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhc
Confidence 3334444445555554 333 33444444444455555555544 33444444445555555555544 334444444
Q ss_pred cCCcccEEecCCccccccccccccCcccccccCeEEecC
Q 011015 205 KLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGG 243 (495)
Q Consensus 205 ~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 243 (495)
.+++|++|+|++|.+ ..+|..|+.+++|+.|++.+|.+
T Consensus 291 ~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCcc
Confidence 445555555544432 24444444444555544444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=2.1e-12 Score=111.70 Aligned_cols=107 Identities=16% Similarity=0.025 Sum_probs=52.3
Q ss_pred eeeEEEccCccCccccccccc--cccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCccc
Q 011015 133 CLRALTLETHCCFDFIQKIPK--NIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLM 210 (495)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 210 (495)
.|++|+++ ++. +..++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|+
T Consensus 30 ~l~~L~l~-~n~---i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLN-DNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECC-SCC---CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCEEECC-CCc---CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 45555555 333 333332 245555555555555553333344455555555555555552222222345555555
Q ss_pred EEecCCccccccccccccCcccccccCeEEecC
Q 011015 211 YLYNEGTSCLRYLPVGIGELISLREVTKFVVGG 243 (495)
Q Consensus 211 ~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~ 243 (495)
+|++++|.+....|..+..+++|+.|++.+|.+
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555555554444455555555555555554444
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1e-12 Score=136.97 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=110.2
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhcc
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCEL 182 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 182 (495)
.++.|+.|+|++|.+. . +|..+..+++|++|+|+ +|. +..+|..++.+++|++|+|++|. +..+|..++.+
T Consensus 222 ~l~~L~~L~Ls~n~l~---~-l~~~~~~l~~L~~L~Ls-~N~---l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF---N-ISANIFKYDFLTRLYLN-GNS---LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTSCCS---C-CCGGGGGCCSCSCCBCT-TSC---CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred cCCCCcEEECCCCCCC---C-CChhhcCCCCCCEEEee-CCc---CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3999999999999853 3 55556689999999999 777 66889999999999999999999 66999999999
Q ss_pred ccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccc-cccCeEEecCc
Q 011015 183 YNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISL-REVTKFVVGGG 244 (495)
Q Consensus 183 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L-~~L~l~~~~~~ 244 (495)
++|++|+|++|. +..+|..++.+++|+.|+|++|.+.+..|..+..+... ..+++..|...
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 999999999998 78999999999999999999998877777766543221 23455555554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=5.6e-14 Score=141.93 Aligned_cols=198 Identities=16% Similarity=0.167 Sum_probs=119.7
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCcc----------CcccccchHHhhcCCeeeEEE-ccCccCccc
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDY----------SWSSKVLPQLFDKLTCLRALT-LETHCCFDF 147 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~l~~~~~~l~~L~~L~-l~~~~~~~~ 147 (495)
.+++++++.|.+..+|..+.. |++|+.|++++|.. ....+..|..+..+++|+.|+ ++ .+.
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~----l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~--- 421 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELES----CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAY--- 421 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHH---
T ss_pred cceeccCChhhHHhhHHHHHH----HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcc---
Confidence 344566666666656666665 77777777654420 012233455556666666665 33 222
Q ss_pred cccccc------cccC--cCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccc
Q 011015 148 IQKIPK------NIEK--LIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 148 ~~~l~~------~~~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 219 (495)
...++. .+.. ...|++|++++|. +..+|. ++.+++|+.|+|++|. +..+|..++.+++|+.|+|++|.+
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCC
Confidence 111111 1111 1357888888887 666776 8888888888888887 668888888888888888888865
Q ss_pred cccccccccCcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEE
Q 011015 220 LRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELG 292 (495)
Q Consensus 220 ~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 292 (495)
.. +| .++.+++|+.|++++|.+.. ...+..+..+++|+.|.+......... ......+..+++|+.|+
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~--~~~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEE
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCC--CCCcHHHhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccC
Confidence 44 66 78888888888888877654 111455667777777776543211100 01112233467787775
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3e-12 Score=109.07 Aligned_cols=126 Identities=16% Similarity=0.083 Sum_probs=105.1
Q ss_pred ceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccccc-ccC
Q 011015 79 KVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKN-IEK 157 (495)
Q Consensus 79 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~-~~~ 157 (495)
.++.+++.+|.+..++. +.. ..++|++|++++|.+..+ ..+..+++|++|+++ +|. +..+|.. +..
T Consensus 20 ~L~~L~l~~n~l~~i~~-~~~---~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls-~N~---l~~~~~~~~~~ 86 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIEN-LGA---TLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVN-NNR---ICRIGEGLDQA 86 (176)
T ss_dssp SCEEEECTTSCCCSCCC-GGG---GTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECC-SSC---CCEECSCHHHH
T ss_pred CceEEEeeCCCCchhHH-hhh---cCCCCCEEECCCCCCCcc-----cccccCCCCCEEECC-CCc---ccccCcchhhc
Confidence 78999999999987643 333 145999999999996443 348889999999999 777 6677644 489
Q ss_pred cCCcceEecCCCCcccccch--hhhccccCcEeecCCCcCCcccchh----hccCCcccEEecCCccc
Q 011015 158 LIHLKYLNLCGQTEIEKLPE--TLCELYNLECLNVSGCWNLRELPRG----IGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 158 l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~~lp~~----l~~l~~L~~L~L~~~~~ 219 (495)
+++|++|++++|. ++.+|. .+..+++|++|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999999999999 788886 78899999999999998 6777775 88999999999998854
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=7.5e-12 Score=108.17 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=50.9
Q ss_pred CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchhhhcccc
Q 011015 106 RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPETLCELYN 184 (495)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 184 (495)
.|++|++++|.+. .+|..|..+++|++|+++ ++. +..+ +..|.++++|++|++++|.+....|..+..+++
T Consensus 32 ~l~~L~L~~n~i~----~ip~~~~~l~~L~~L~Ls-~N~---i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGNQFT----LVPKELSNYKHLTLIDLS-NNR---ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TCCEEECCSSCCC----SCCGGGGGCTTCCEEECC-SSC---CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCEEECCCCcCc----hhHHHhhcccCCCEEECC-CCc---CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 4555555555532 133445555555555555 444 3333 233555555555555555522222234555555
Q ss_pred CcEeecCCCcCCcccch-hhccCCcccEEecCCc
Q 011015 185 LECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGT 217 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~ 217 (495)
|++|+|++|. +..+|. .+..+++|+.|++++|
T Consensus 104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 104 LRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 5555555555 444443 2445555555555555
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=6.1e-12 Score=108.72 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=102.2
Q ss_pred EEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchH-HhhcCCeeeEEEccCccCccccccc-cccccCc
Q 011015 81 LHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQ-LFDKLTCLRALTLETHCCFDFIQKI-PKNIEKL 158 (495)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l 158 (495)
+.++++++.+..+|..+ .+.+++|++++|.+. ...+. .|..+++|++|+++ ++. +..+ |..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~------~~~l~~L~l~~n~i~---~~~~~~~~~~l~~L~~L~Ls-~N~---l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI------PLHTTELLLNDNELG---RISSDGLFGRLPHLVKLELK-RNQ---LTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCC------CTTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECC-SSC---CCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCC------CCCCCEEECCCCcCC---ccCCccccccCCCCCEEECC-CCC---CCCcCHhHcCCc
Confidence 46777888887777644 338999999999853 32332 47899999999999 666 5555 7789999
Q ss_pred CCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccc
Q 011015 159 IHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLR 221 (495)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 221 (495)
++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|++++|.+..
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999544455568899999999999998555567789999999999999996654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=105.70 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=101.2
Q ss_pred cEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcE
Q 011015 108 RSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLEC 187 (495)
Q Consensus 108 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 187 (495)
++++++++.+.. +|..+ .+.|++|+++ ++. +..+|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 13 ~~l~~~~~~l~~----ip~~~--~~~l~~L~L~-~n~---i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLKV----LPKGI--PRDVTELYLD-GNQ---FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCSS----CCSCC--CTTCCEEECC-SSC---CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCCCc----CCCCC--CCCCCEEECC-CCc---CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 578888887543 34322 2579999999 777 7788888999999999999999944444466899999999
Q ss_pred eecCCCcCCcccc-hhhccCCcccEEecCCccccccccccccCcccccccCeEEecCcc
Q 011015 188 LNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGY 245 (495)
Q Consensus 188 L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 245 (495)
|+|++|. +..++ ..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+.-
T Consensus 83 L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 83 LILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999998 55555 468999999999999997655444568899999999998887654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.8e-13 Score=117.94 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCC
Q 011015 90 GTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQ 169 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 169 (495)
++.++..+.. +++|++|++++|.+.. +| .+..+++|++|+++ ++. +..+|..+..+++|++|++++|
T Consensus 37 l~~l~~~~~~----l~~L~~L~ls~n~l~~----l~-~~~~l~~L~~L~l~-~n~---l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 37 IEKMDATLST----LKACKHLALSTNNIEK----IS-SLSGMENLRILSLG-RNL---IKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCCCHHHHHH----TTTCSEEECSEEEESC----CC-CHHHHTTCCEEEEE-EEE---ECSCSSHHHHHHHCSEEEEEEE
T ss_pred HhhhhHHHhc----CCCCCEEECCCCCCcc----cc-ccccCCCCCEEECC-CCC---cccccchhhcCCcCCEEECcCC
Confidence 3334444554 7777777777776432 44 46677777777777 555 5566666666677777777777
Q ss_pred CcccccchhhhccccCcEeecCCCcCCcccch--hhccCCcccEEecCCcccccccc
Q 011015 170 TEIEKLPETLCELYNLECLNVSGCWNLRELPR--GIGKLRKLMYLYNEGTSCLRYLP 224 (495)
Q Consensus 170 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~~ 224 (495)
. +..+| .+..+++|++|++++|. +..++. .+..+++|++|++++|.+....|
T Consensus 104 ~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 104 Q-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp E-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred c-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 6 55565 46677777777777776 554443 56677777777777775544433
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=1.4e-13 Score=119.88 Aligned_cols=134 Identities=19% Similarity=0.142 Sum_probs=102.6
Q ss_pred CCCccEEEEcCCccCc---ccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhh
Q 011015 104 MRRLRSLLVEGGDYSW---SSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLC 180 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~---~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 180 (495)
.+.++.+++..+.+.. .-..+|..+..+++|++|+++ ++. +..+| .+..+++|++|++++|. +..+|..+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~---l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNN---IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEE---ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCC---Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 5555555555554321 112255579999999999999 776 66677 78899999999999998 778888888
Q ss_pred ccccCcEeecCCCcCCcccchhhccCCcccEEecCCcccccccc-ccccCcccccccCeEEecCcc
Q 011015 181 ELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLP-VGIGELISLREVTKFVVGGGY 245 (495)
Q Consensus 181 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~i~~l~~L~~L~l~~~~~~~ 245 (495)
.+++|++|++++|. +..+| .+..+++|++|++++|.+....+ ..+..+++|+.|++.+|.+..
T Consensus 91 ~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 91 VADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHCSEEEEEEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCcCCEEECcCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 88999999999997 66676 68899999999999996543222 367888999999988776543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=8.3e-11 Score=100.17 Aligned_cols=124 Identities=27% Similarity=0.352 Sum_probs=78.8
Q ss_pred EEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCC
Q 011015 82 HLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIH 160 (495)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~ 160 (495)
.+++.++.+..+|..+ .+.|++|++++|.+ ....+..|..+++|++|+++ ++. +..++ ..+..+++
T Consensus 11 ~l~~~~~~l~~~p~~~------~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~-~n~---l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI------PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLS-QNQ---IQSLPDGVFDKLTK 77 (177)
T ss_dssp EEECCSSCCSSCCTTC------CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECC-SSC---CCCCCTTTTTTCTT
T ss_pred EEEecCCCCccCCCCC------CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECC-CCc---ceEeChhHccCCCc
Confidence 4555566665555332 45677777777773 33334456677777777777 555 55554 33567777
Q ss_pred cceEecCCCCcccccch-hhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCcccc
Q 011015 161 LKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCL 220 (495)
Q Consensus 161 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~ 220 (495)
|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. +..+++|++|++++|.+.
T Consensus 78 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 78 LTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 7777777777 444443 35677777777777776 5555554 466777777777777543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=3.8e-10 Score=106.42 Aligned_cols=125 Identities=12% Similarity=-0.030 Sum_probs=87.7
Q ss_pred ccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC-
Q 011015 285 QKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP- 363 (495)
Q Consensus 285 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 363 (495)
..++..+.+.+.- ...........|++|+.++++++.... ++...|..+++|+.|++.++ + ..++.
T Consensus 201 ~~~~~~l~~~~~l---------~~~~~~~l~~~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l~~n-i-~~I~~~ 267 (329)
T 3sb4_A 201 PRDINFLTIEGKL---------DNADFKLIRDYMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKLPHN-L-KTIGQR 267 (329)
T ss_dssp GGGCSEEEEEECC---------CHHHHHHHHHHCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEECCTT-C-CEECTT
T ss_pred ccccceEEEeeee---------cHHHHHHHHHhcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEECCcc-c-ceehHH
Confidence 4566777776543 111111111237899999999988877 86778999999999999987 3 33443
Q ss_pred -CCCCCccc-eeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeee
Q 011015 364 -LGKLPSLE-YLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSI 441 (495)
Q Consensus 364 -~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l 441 (495)
+.++++|+ .+.+.+ .++.++..... +|++|+.|++.+.. ++.+.- .++..+++|++++.
T Consensus 268 aF~~~~~L~~~l~l~~--~l~~I~~~aF~-----------~c~~L~~l~l~~n~-i~~I~~-----~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA--SVTAIEFGAFM-----------GCDNLRYVLATGDK-ITTLGD-----ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCEEEEECT--TCCEECTTTTT-----------TCTTEEEEEECSSC-CCEECT-----TTTCTTCCCCEEEC
T ss_pred HhhCChhccEEEEEcc--cceEEchhhhh-----------CCccCCEEEeCCCc-cCccch-----hhhcCCcchhhhcc
Confidence 88999999 999976 56666544332 68999999986554 544432 45778889998864
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=2.3e-10 Score=97.43 Aligned_cols=127 Identities=22% Similarity=0.230 Sum_probs=97.0
Q ss_pred ccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccch-hhhcccc
Q 011015 107 LRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPE-TLCELYN 184 (495)
Q Consensus 107 L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 184 (495)
.+.++++++.+.. +|. ...+.|++|+++ ++. +..++ ..+..+++|++|++++|. +..+|. .+..+++
T Consensus 9 ~~~l~~~~~~l~~----~p~--~~~~~l~~L~l~-~n~---l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTS----VPT--GIPSSATRLELE-SNK---LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSS----CCT--TCCTTCSEEECC-SSC---CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCcc----CCC--CCCCCCcEEEeC-CCc---ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCc
Confidence 4678888887433 342 223689999999 666 55664 457889999999999999 566654 4689999
Q ss_pred CcEeecCCCcCCcccchh-hccCCcccEEecCCccccccccccccCcccccccCeEEecCcc
Q 011015 185 LECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGY 245 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~ 245 (495)
|++|++++|. +..+|.. +..+++|++|++++|.+....+..+..+++|+.|++..|.+..
T Consensus 78 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 78 LTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999999998 6666654 7899999999999997654333446889999999998876643
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=1.1e-08 Score=98.57 Aligned_cols=127 Identities=11% Similarity=0.151 Sum_probs=79.3
Q ss_pred CCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCC----CCCCC--CCCCCccceeeccccccceEeCccccCCC
Q 011015 319 PNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNC----EHLPP--LGKLPSLEYLVIELMNSVKRVGNEFLGVE 392 (495)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 392 (495)
.+|+.+.+.. .... ++...|.+|++|+.+.+.++... ..++. +.++++|+.+.+.+ .++.++.....
T Consensus 248 ~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-- 320 (401)
T 4fdw_A 248 SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG-- 320 (401)
T ss_dssp CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT--
T ss_pred CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc--
Confidence 3566666632 2233 43556777778888877766443 11222 77888888888862 35555544332
Q ss_pred CCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCC-CCccEEEEeCCc
Q 011015 393 SDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQK-TTLQKLWIWGCP 469 (495)
Q Consensus 393 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l-~~L~~L~l~~~~ 469 (495)
+|++|+.+.|.+. ++.+.- .++..+ +|+++.+.++......+..+..+ .+++.|.+-.+.
T Consensus 321 ---------~c~~L~~l~lp~~--l~~I~~-----~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 321 ---------GNRKVTQLTIPAN--VTQINF-----SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ---------TCCSCCEEEECTT--CCEECT-----TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ---------CCCCccEEEECcc--ccEEcH-----HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6788999887543 444332 356678 99999999975433233445555 478899988764
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=6.7e-10 Score=94.03 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=61.9
Q ss_pred cEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccchh-hhccccC
Q 011015 108 RSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPET-LCELYNL 185 (495)
Q Consensus 108 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L 185 (495)
+.++++++.+.. +|..+ .++|++|+++ ++. +..+ |..+..+++|++|+|++|. +..+|.. +..+++|
T Consensus 15 ~~l~~~~n~l~~----iP~~~--~~~L~~L~Ls-~N~---l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLAS----VPAGI--PTDKQRLWLN-NNQ---ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSS----CCSCC--CTTCSEEECC-SSC---CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCCc----cCCCc--CCCCcEEEeC-CCC---ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchh
Confidence 566777766422 33322 2567777777 555 4444 4556777777777777776 5555543 4567777
Q ss_pred cEeecCCCcCCcccchh-hccCCcccEEecCCccc
Q 011015 186 ECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 186 ~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~ 219 (495)
++|+|++|. +..+|.. +..+++|++|++++|.+
T Consensus 84 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 84 TQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred hEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 777777776 5555554 66677777777777743
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=7.6e-10 Score=93.34 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=59.7
Q ss_pred ccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccch-hhhcccc
Q 011015 107 LRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLPE-TLCELYN 184 (495)
Q Consensus 107 L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 184 (495)
.+.+++++|.+.. +|..+ .+.|++|+++ ++. +..+ |..+..+++|++|++++|. +..+|. .+..+++
T Consensus 11 ~~~l~~s~n~l~~----ip~~~--~~~l~~L~L~-~N~---i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKSLAS----VPTGI--PTTTQVLYLY-DNQ---ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSCCSS----CCSCC--CTTCSEEECC-SSC---CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCEEEeCCCCcCc----cCccC--CCCCcEEEcC-CCc---CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCC
Confidence 4566676666432 33222 2566677776 555 4444 4556667777777777776 444443 3456677
Q ss_pred CcEeecCCCcCCcccch-hhccCCcccEEecCCccc
Q 011015 185 LECLNVSGCWNLRELPR-GIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 185 L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~ 219 (495)
|++|+|++|. +..+|. .+..+++|++|++++|.+
T Consensus 80 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 80 LTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 7777777766 445544 366667777777776643
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=2.4e-09 Score=90.25 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=68.6
Q ss_pred eeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchh-hccCCcccEE
Q 011015 134 LRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYL 212 (495)
Q Consensus 134 L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L 212 (495)
.++++++ ++. +..+|..+ .++|++|++++|.+.+..|..+..+++|++|+|++|. +..+|.. +..+++|++|
T Consensus 11 ~~~l~~s-~n~---l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCS-GKS---LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECT-TSC---CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeC-CCC---cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEE
Confidence 4567777 555 66666544 3677777777777333335567777777777777776 5555544 5677777777
Q ss_pred ecCCccccccccccccCcccccccCeEEecCc
Q 011015 213 YNEGTSCLRYLPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 213 ~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77777554433445777777777777777654
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.5e-09 Score=90.49 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=62.0
Q ss_pred eEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchh-hccCCcccEEe
Q 011015 135 RALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLY 213 (495)
Q Consensus 135 ~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~ 213 (495)
+.++++ ++. +..+|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 15 ~~l~~~-~n~---l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQ-NIR---LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECC-SSC---CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeC-CCC---CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEE
Confidence 456666 555 555665443 667777777776333335556667777777777776 5555544 45667777777
Q ss_pred cCCccccccccccccCcccccccCeEEecCc
Q 011015 214 NEGTSCLRYLPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 214 L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
|++|.+....+..+..+++|+.|++.+|.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7776544322233666677777766666554
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=2.2e-08 Score=96.82 Aligned_cols=307 Identities=12% Similarity=0.001 Sum_probs=167.6
Q ss_pred cccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccc-hh
Q 011015 101 VKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLP-ET 178 (495)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~ 178 (495)
|.+|.+|+.+.+..+ +...-..+|..+.+|+.+++. ++ +..+ ...|.++..|+.+.+..+ +..++ ..
T Consensus 67 F~~c~~L~~i~lp~~----i~~I~~~aF~~c~~L~~i~lp-~~----l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~a 135 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST----VREIGEFAFENCSKLEIINIP-DS----VKMIGRCTFSGCYALKSILLPLM--LKSIGVEA 135 (394)
T ss_dssp TTTCTTEEEEECCTT----CCEECTTTTTTCTTCCEECCC-TT----CCEECTTTTTTCTTCCCCCCCTT--CCEECTTT
T ss_pred hhCCCCceEEEeCCC----ccCcchhHhhCCCCCcEEEeC-CC----ceEccchhhcccccchhhcccCc--eeeeccee
Confidence 334899999988643 333335568888999999886 32 3334 345778888888777655 23332 33
Q ss_pred hhccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhccc
Q 011015 179 LCELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLN 258 (495)
Q Consensus 179 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 258 (495)
+..+..++........ ..-...|..+++|+.+.+.++ ....-...+..+++|+.+.+..+-.. -.-..+..+.
T Consensus 136 F~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~----I~~~~F~~~~ 208 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKI----IRDYCFAECI 208 (394)
T ss_dssp TTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCE----ECTTTTTTCT
T ss_pred eecccccccccCcccc--ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceE----eCchhhcccc
Confidence 4444433333332222 111234677788888887665 22223344677777777766432110 0111222333
Q ss_pred ccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCC
Q 011015 259 LLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPI 338 (495)
Q Consensus 259 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 338 (495)
.|+.+.+..-.. . .......+..|+.+.+.... ..-....+..+..++.+.+..+... +..
T Consensus 209 ~L~~i~~~~~~~--~----i~~~~~~~~~l~~i~ip~~~----------~~i~~~~f~~~~~l~~~~~~~~~~~---i~~ 269 (394)
T 4fs7_A 209 LLENMEFPNSLY--Y----LGDFALSKTGVKNIIIPDSF----------TELGKSVFYGCTDLESISIQNNKLR---IGG 269 (394)
T ss_dssp TCCBCCCCTTCC--E----ECTTTTTTCCCCEEEECTTC----------CEECSSTTTTCSSCCEEEECCTTCE---ECS
T ss_pred ccceeecCCCce--E----eehhhcccCCCceEEECCCc----------eecccccccccccceeEEcCCCcce---eec
Confidence 333322221100 0 00112234566666664321 0001223455677888877654332 324
Q ss_pred chhhhccccceeeecCccCCCCCCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeeccccccc
Q 011015 339 NWIMSLTNLRDLSLSKWRNCEHLPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELE 418 (495)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 418 (495)
..+..+..++.+......... ..+..+.+|+.+.+.+ .++.++.... .+|.+|+.++|.+. ++
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF-----------~~c~~L~~i~lp~~--v~ 332 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAF-----------ESCTSLVSIDLPYL--VE 332 (394)
T ss_dssp CTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECTTTT-----------TTCTTCCEECCCTT--CC
T ss_pred cccccccccceeccCceeecc--cccccccccccccccc--ccceechhhh-----------cCCCCCCEEEeCCc--cc
Confidence 556677777777766543211 1266778888888753 2455544332 25788888887532 33
Q ss_pred ccccccccccccccCcccceeeecCCcCccCCC-cCCCCCCCccEEEEeCC
Q 011015 419 EWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALP-DHLLQKTTLQKLWIWGC 468 (495)
Q Consensus 419 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~-~~~~~l~~L~~L~l~~~ 468 (495)
.+. ..++..+.+|+.+.+..+ +..+. ..+.+|++|+.+++..+
T Consensus 333 ~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 333 EIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 332 135667888888888764 44444 45677889999988654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.5e-08 Score=97.82 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=137.5
Q ss_pred CCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccc-hhhhc
Q 011015 104 MRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLP-ETLCE 181 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~ 181 (495)
+..++.+.+-.+ +...-..+|..+ +|+.+.+. ++ +..+ ...|.++ +|+.+.+..+ +..++ ..+..
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~~-~L~~i~l~-~~----i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~ 178 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRNS-QIAKVVLN-EG----LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYY 178 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTTC-CCSEEECC-TT----CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTT
T ss_pred cCCccEEEECCc----cCEehHhhcccC-CccEEEeC-CC----ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhC
Confidence 556666666543 222234445554 57777776 32 3333 2335553 5777777652 44443 45667
Q ss_pred cccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCcccccccCeEEecCccCCccCccchhcccccC
Q 011015 182 LYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREVTKFVVGGGYDRACSLGSLKKLNLLR 261 (495)
Q Consensus 182 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 261 (495)
|++|+.+++.++. +..++.....+.+|+.+.+..+ +...-...+..+++|+.+.+..+- .. -.-..+.. ..|+
T Consensus 179 c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~---I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 179 CYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-ST---IGQEAFRE-SGIT 251 (401)
T ss_dssp CTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CE---ECTTTTTT-CCCS
T ss_pred cccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cC---cccccccc-CCcc
Confidence 7777777777765 5666655444577777777654 333333456677777776664321 10 00111222 3444
Q ss_pred CceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchh
Q 011015 262 KCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWI 341 (495)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 341 (495)
.+.+..- + ..+....+..|++|+.+.+..+...... ...-...++..|++|+.+.+.. .... ++...|
T Consensus 252 ~i~lp~~--i---~~I~~~aF~~c~~L~~l~l~~~~~~~~~----~~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~aF 319 (401)
T 4fdw_A 252 TVKLPNG--V---TNIASRAFYYCPELAEVTTYGSTFNDDP----EAMIHPYCLEGCPKLARFEIPE-SIRI--LGQGLL 319 (401)
T ss_dssp EEEEETT--C---CEECTTTTTTCTTCCEEEEESSCCCCCT----TCEECTTTTTTCTTCCEECCCT-TCCE--ECTTTT
T ss_pred EEEeCCC--c---cEEChhHhhCCCCCCEEEeCCccccCCc----ccEECHHHhhCCccCCeEEeCC-ceEE--Ehhhhh
Confidence 4444321 1 1122355778899999999876532100 0011234567788999999874 3444 546778
Q ss_pred hhccccceeeecCccCCCCCCC-CCCCCccceeeccccc
Q 011015 342 MSLTNLRDLSLSKWRNCEHLPP-LGKLPSLEYLVIELMN 379 (495)
Q Consensus 342 ~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 379 (495)
.+|++|+.+.+..+ .....+. +.++ +|+.+.+.++.
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 89999999999765 3322222 7788 99999998664
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.9e-08 Score=95.96 Aligned_cols=324 Identities=12% Similarity=0.024 Sum_probs=193.0
Q ss_pred CCCCCCCCceEEEEEEeccCCCcchhhhcccccCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCcccccc
Q 011015 71 GMSSFEQKKVLHLMLTVDVGTSVPIAIWNNVKRMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQK 150 (495)
Q Consensus 71 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 150 (495)
.+.... +++.+.+..+ ++.+... +|.+|++|+.+++..+ +...-..+|..+..|+.+.+. .. +..
T Consensus 66 AF~~c~--~L~~i~lp~~-i~~I~~~---aF~~c~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p-~~----l~~ 130 (394)
T 4fs7_A 66 AFQGCR--KVTEIKIPST-VREIGEF---AFENCSKLEIINIPDS----VKMIGRCTFSGCYALKSILLP-LM----LKS 130 (394)
T ss_dssp TTTTCT--TEEEEECCTT-CCEECTT---TTTTCTTCCEECCCTT----CCEECTTTTTTCTTCCCCCCC-TT----CCE
T ss_pred HhhCCC--CceEEEeCCC-ccCcchh---HhhCCCCCcEEEeCCC----ceEccchhhcccccchhhccc-Cc----eee
Confidence 555555 7888888533 4434322 2334999999999765 223234568889999988776 32 223
Q ss_pred c-cccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCcccccccccccc
Q 011015 151 I-PKNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGTSCLRYLPVGIG 228 (495)
Q Consensus 151 l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~i~ 228 (495)
+ ...|.++..++........ ..-...+..+.+|+.+.+..+. ..++ ..|..+++|+.+++..+ ....-...+.
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred ecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 3 3345565544433333322 1122457788999999997653 3344 34778899999988776 3333345577
Q ss_pred CcccccccCeEEecCccCCccCccchhcccccCCceeeccCCCCChhhhHhhccccccccceEEEEEecCCCCCCccchh
Q 011015 229 ELISLREVTKFVVGGGYDRACSLGSLKKLNLLRKCSIRGLGGVSDAGEVRRAELEKQKYLVELGLYFDQAGRRENEEDED 308 (495)
Q Consensus 229 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 308 (495)
.+..|+.+.+..+...- .... -....|+.+.+..- . .......+..+..++.+.+..+..
T Consensus 206 ~~~~L~~i~~~~~~~~i--~~~~---~~~~~l~~i~ip~~--~---~~i~~~~f~~~~~l~~~~~~~~~~---------- 265 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYL--GDFA---LSKTGVKNIIIPDS--F---TELGKSVFYGCTDLESISIQNNKL---------- 265 (394)
T ss_dssp TCTTCCBCCCCTTCCEE--CTTT---TTTCCCCEEEECTT--C---CEECSSTTTTCSSCCEEEECCTTC----------
T ss_pred cccccceeecCCCceEe--ehhh---cccCCCceEEECCC--c---eecccccccccccceeEEcCCCcc----------
Confidence 88888877664332211 1111 11233444433221 0 011123456778888888865431
Q ss_pred HHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC--CCCCCccceeeccccccceEeCc
Q 011015 309 ERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP--LGKLPSLEYLVIELMNSVKRVGN 386 (495)
Q Consensus 309 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~ 386 (495)
.-....+..++.++.+...... ++...+..+.+|+.+.+..+ . ..++. +.++.+|+.+.|.. .++.++.
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred eeeccccccccccceeccCcee-----eccccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhH
Confidence 1112344567788887765543 32455678899999998765 2 22322 78899999999852 3555554
Q ss_pred cccCCCCCCCCCccccCCccceeeecccccccccccccccccccccCcccceeeecCCcCccCCCcCCCCCCCccEE
Q 011015 387 EFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKALPDHLLQKTTLQKL 463 (495)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~l~~L~~L 463 (495)
... .+|.+|+.+.+... ++.+.- .++..+++|+++.+..+ ++.+...+.++++|+.+
T Consensus 337 ~aF-----------~~c~~L~~i~lp~~--l~~I~~-----~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSF-----------RGCTSLSNINFPLS--LRKIGA-----NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTT-----------TTCTTCCEECCCTT--CCEECT-----TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred Hhc-----------cCCCCCCEEEECcc--ccEehH-----HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 332 26889999987543 433321 45778899999999764 33344457778888765
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=1.9e-09 Score=102.91 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCccCccc-ccchHHhh-cCCeeeEEEccCccCcccccc-cccc-ccCcCCcceEecCCCCcccccchhh
Q 011015 104 MRRLRSLLVEGGDYSWSS-KVLPQLFD-KLTCLRALTLETHCCFDFIQK-IPKN-IEKLIHLKYLNLCGQTEIEKLPETL 179 (495)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~-~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~-l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~ 179 (495)
++.|+.|++++|.+.... ..+...+. ..+.|++|+++ +|. +.. .... ...+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-~n~---l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-SCQ---LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-TCC---CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-CCC---CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 567788888888743211 11222222 22678888888 555 322 1222 2345677888888887322222222
Q ss_pred h-----ccccCcEeecCCCcCCcc-----cchhhccCCcccEEecCCcccccc----ccccccCcccccccCeEEec
Q 011015 180 C-----ELYNLECLNVSGCWNLRE-----LPRGIGKLRKLMYLYNEGTSCLRY----LPVGIGELISLREVTKFVVG 242 (495)
Q Consensus 180 ~-----~l~~L~~L~L~~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~~~~----~~~~i~~l~~L~~L~l~~~~ 242 (495)
. ..++|++|+|++|. +.. ++..+..+++|++|+|++|.+... ++..+...++|++|+++.|.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 1 34678888888886 432 344456677788888888754321 23334444455555554443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.70 E-value=2.3e-07 Score=89.68 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=56.3
Q ss_pred CC-CccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccc-hhhh
Q 011015 104 MR-RLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLP-ETLC 180 (495)
Q Consensus 104 ~~-~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 180 (495)
|+ .|+.+.+-.+ +...-..+|..+.+|+.+.+. .+....+..+ ...|.++.+|+.+.+..+ +..++ ..+.
T Consensus 62 ~~~~L~sI~iP~s----vt~Ig~~AF~~C~~L~~i~~~-~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~ 134 (394)
T 4gt6_A 62 YKYVLTSVQIPDT----VTEIGSNAFYNCTSLKRVTIQ-DNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH 134 (394)
T ss_dssp CCSCCCEEEECTT----CCEECTTTTTTCTTCCEEEEG-GGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT
T ss_pred CCCcCEEEEECCC----eeEEhHHHhhCCccCceEeec-CCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh
Confidence 53 4777776543 223334556777777777765 2210113333 234666677776666554 33333 3456
Q ss_pred ccccCcEeecCCCcCCcccc-hhhccCCcccEEecCCc
Q 011015 181 ELYNLECLNVSGCWNLRELP-RGIGKLRKLMYLYNEGT 217 (495)
Q Consensus 181 ~l~~L~~L~L~~~~~~~~lp-~~l~~l~~L~~L~L~~~ 217 (495)
.+.+|+.+.+... ...++ ..+..+.+|+.+.+..+
T Consensus 135 ~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 135 HCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhcccccccccce--eeeecccceecccccccccccce
Confidence 6777777777543 22232 23556667777766554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.9e-08 Score=92.68 Aligned_cols=91 Identities=20% Similarity=0.134 Sum_probs=53.7
Q ss_pred chHHhhcCCeeeEEEccCccCcccccccc-ccccCcCCcceEecCCCCcccccchhhhccccCcEeecCCCcCCcccchh
Q 011015 124 LPQLFDKLTCLRALTLETHCCFDFIQKIP-KNIEKLIHLKYLNLCGQTEIEKLPETLCELYNLECLNVSGCWNLRELPRG 202 (495)
Q Consensus 124 l~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~lp~~ 202 (495)
+|. +..+++|++|+|++++. +..++ ..|..+++|++|+|++|.+.+..|..+..+++|++|+|++|. +..+|..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred cCC-CCCCCCeeEEEccCCCC---CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 555 66666677777762144 44443 456667777777777776333334456667777777777766 5555554
Q ss_pred hccCCcccEEecCCccc
Q 011015 203 IGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 203 l~~l~~L~~L~L~~~~~ 219 (495)
+....+|+.|++.+|.+
T Consensus 99 ~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTCSCCCCEEECCSSCC
T ss_pred HcccCCceEEEeeCCCc
Confidence 33333377777766643
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=2.7e-08 Score=94.43 Aligned_cols=102 Identities=16% Similarity=0.027 Sum_probs=80.8
Q ss_pred EEEccCcc-CccccccccccccCcCCcceEecCC-CCcccccc-hhhhccccCcEeecCCCcCCcccchhhccCCcccEE
Q 011015 136 ALTLETHC-CFDFIQKIPKNIEKLIHLKYLNLCG-QTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGIGKLRKLMYL 212 (495)
Q Consensus 136 ~L~l~~~~-~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L 212 (495)
.++.+ +. . +..+|. +..+.+|++|+|++ |. +..+| ..++.+++|++|+|++|......|..|..+++|++|
T Consensus 12 ~v~~~-~~n~---l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCT-RDGA---LDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECC-SSCC---CTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcC-CCCC---CCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 45777 44 5 778898 99999999999996 88 66665 678899999999999998444445568999999999
Q ss_pred ecCCcccccccccc-ccCcccccccCeEEecCcc
Q 011015 213 YNEGTSCLRYLPVG-IGELISLREVTKFVVGGGY 245 (495)
Q Consensus 213 ~L~~~~~~~~~~~~-i~~l~~L~~L~l~~~~~~~ 245 (495)
+|++|.+. .+|.. +..++ |+.|++..|.+..
T Consensus 86 ~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 86 NLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eCCCCccc-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999765 45544 45554 9999999887764
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=3e-09 Score=101.54 Aligned_cols=85 Identities=14% Similarity=-0.011 Sum_probs=46.2
Q ss_pred CCeeeEEEccCccCccccccc-cccc----c-CcCCcceEecCCCCcccccc-hhhhccccCcEeecCCCcCCcccchhh
Q 011015 131 LTCLRALTLETHCCFDFIQKI-PKNI----E-KLIHLKYLNLCGQTEIEKLP-ETLCELYNLECLNVSGCWNLRELPRGI 203 (495)
Q Consensus 131 l~~L~~L~l~~~~~~~~~~~l-~~~~----~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~~lp~~l 203 (495)
++.|++|+++ ++. +... ...+ . ..++|++|+|++|.+..... .....+++|++|+|++|.....-...+
T Consensus 71 ~~~L~~L~Ls-~n~---l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLA-GVR---MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECT-TSC---CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEec-CCC---CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 4567788887 555 3221 1222 2 22578888888887322212 223346677788888776222211122
Q ss_pred -----ccCCcccEEecCCccc
Q 011015 204 -----GKLRKLMYLYNEGTSC 219 (495)
Q Consensus 204 -----~~l~~L~~L~L~~~~~ 219 (495)
...++|+.|+|++|.+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPL 167 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCC
T ss_pred HHHHHhcCCccceeeCCCCCC
Confidence 2356677777777754
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=6.8e-06 Score=79.25 Aligned_cols=124 Identities=11% Similarity=0.120 Sum_probs=73.0
Q ss_pred cCCCccEEEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccc-cccccCcCCcceEecCCCCcccccc-hhhh
Q 011015 103 RMRRLRSLLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKI-PKNIEKLIHLKYLNLCGQTEIEKLP-ETLC 180 (495)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 180 (495)
+|++|+.+.+..+.-..+...-..+|..+..|+.+.+. .. +..+ ...+..+.+|+.+.+..+. ..++ ..+.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~-~~----~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~ 157 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL-DS----VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFS 157 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG-TT----CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccC-Cc----cceehhhhhhhhccccccccccee--eeeccccee
Confidence 48888888887664333334335567777888877765 22 3333 3446778888888886543 3333 4566
Q ss_pred ccccCcEeecCCCcCCcccchhhccCCcccEEecCCccccccccccccCccccccc
Q 011015 181 ELYNLECLNVSGCWNLRELPRGIGKLRKLMYLYNEGTSCLRYLPVGIGELISLREV 236 (495)
Q Consensus 181 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~i~~l~~L~~L 236 (495)
.+..|+.+.+..+ +..+........+|+.+.+... ........+..+..++..
T Consensus 158 ~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 158 YCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccce--eeEeccccccccceeEEEECCc-ccccccchhhhcccccee
Confidence 7888888888764 4444433333456777777654 222223345555555443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=7.6e-09 Score=97.96 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=32.2
Q ss_pred cCCccceeeecccccccccccccccccccccCcccceeeecCCcCccC----CCcCCCCCCCccEEEEeCCcc
Q 011015 402 AFPKLKLLDFYIMKELEEWDFGTAIKGEIIIMPRLSSLSIDGCPKLKA----LPDHLLQKTTLQKLWIWGCPI 470 (495)
Q Consensus 402 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~----l~~~~~~l~~L~~L~l~~~~~ 470 (495)
.+|+|+.|++.+|. +.+... ..+.. ...+|+|++|+|+.|..... ++..+..+++|+.|++++|..
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~-~~la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVV-EMFLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHH-HHHHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCC-CchHHH-HHHHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 46666666666554 221100 00000 12456677777766543321 333334456667777666654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=7.5e-08 Score=91.11 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=22.3
Q ss_pred CCCCcceEEEeeecCcCC---CCCCchhhhccccceeeecCccCC
Q 011015 317 PPPNLKKLEIYDYRGRRN---VVPINWIMSLTNLRDLSLSKWRNC 358 (495)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~ 358 (495)
.+++|++|+++.|.+... .+ +..+.++++|+.|++++|.+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L-~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLL-LDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHH-HTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHH-HhhcccCCcceEEECCCCcCC
Confidence 456677777766554320 01 122345677777777766544
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=3e-08 Score=82.36 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=40.9
Q ss_pred cCCccceeeeccccccccccccccccccccc----CcccceeeecCCcCccC-CCcCCCCCCCccEEEEeCCcchhH
Q 011015 402 AFPKLKLLDFYIMKELEEWDFGTAIKGEIII----MPRLSSLSIDGCPKLKA-LPDHLLQKTTLQKLWIWGCPILEE 473 (495)
Q Consensus 402 ~~~~L~~L~l~~~~~l~~~~~~~~l~~~~~~----~~~L~~L~l~~c~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~ 473 (495)
++++|+.|++++|..+++..+. .+.. .++|++|+|++|..+++ --..+..+++|++|++++|+.+.+
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~-----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLE-----RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHH-----HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHH-----HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 5667777777777666665441 2222 24677777777765543 112345577777777777776655
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=4.3e-08 Score=81.46 Aligned_cols=93 Identities=9% Similarity=0.013 Sum_probs=70.1
Q ss_pred cccceeeecCccCCCC-CCCCCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeecccccccccccc
Q 011015 345 TNLRDLSLSKWRNCEH-LPPLGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFYIMKELEEWDFG 423 (495)
Q Consensus 345 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 423 (495)
.+|+.|++++|.++.. +..+.++++|++|+|++|..+++.+-...+... ..+++|++|+|++|+++++-.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-------~~~~~L~~L~Ls~C~~ITD~Gl- 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-------NLQKSMLEMEIISCGNVTDKGI- 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-------HHHHHCCEEEEESCTTCCHHHH-
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-------cccCCCCEEEcCCCCcCCHHHH-
Confidence 4799999999986653 333789999999999999987653322221100 0146899999999999988766
Q ss_pred cccccccccCcccceeeecCCcCccC
Q 011015 424 TAIKGEIIIMPRLSSLSIDGCPKLKA 449 (495)
Q Consensus 424 ~~l~~~~~~~~~L~~L~l~~c~~~~~ 449 (495)
..+..+++|++|+|++|+.+++
T Consensus 133 ----~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 ----IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----HHGGGCTTCCEEEEESCTTCCC
T ss_pred ----HHHhcCCCCCEEECCCCCCCCc
Confidence 3466799999999999987765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=8.7e-07 Score=75.52 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=75.3
Q ss_pred hhhhcccccCCCccEEEEcCC-ccCcc-cccchHHhhcCCeeeEEEccCccCcccccc-----ccccccCcCCcceEecC
Q 011015 95 IAIWNNVKRMRRLRSLLVEGG-DYSWS-SKVLPQLFDKLTCLRALTLETHCCFDFIQK-----IPKNIEKLIHLKYLNLC 167 (495)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~ 167 (495)
..+...+...+.|++|++++| .+... ...+...+...+.|++|+|+ +|. +.. +...+...+.|++|+|+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-~n~---i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTR---SNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSC---CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-CCC---CChHHHHHHHHHHHhCCCcCEEECc
Confidence 344444555888888888888 64221 12244556667888888888 555 332 33445556778888888
Q ss_pred CCCcccc-----cchhhhccccCcEeec--CCCcCCcc-----cchhhccCCcccEEecCCccc
Q 011015 168 GQTEIEK-----LPETLCELYNLECLNV--SGCWNLRE-----LPRGIGKLRKLMYLYNEGTSC 219 (495)
Q Consensus 168 ~~~~~~~-----lp~~~~~l~~L~~L~L--~~~~~~~~-----lp~~l~~l~~L~~L~L~~~~~ 219 (495)
+|. ++. +...+...+.|++|+| ++|. ++. +...+...++|++|++++|.+
T Consensus 102 ~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 102 SNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 887 442 3455666677888888 6676 332 334455567788888887744
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=7.4e-07 Score=79.91 Aligned_cols=81 Identities=25% Similarity=0.256 Sum_probs=51.3
Q ss_pred cCcCCcceEecCCCCccc--ccchhhhccccCcEeecCCCcCCcccchhhccCC--cccEEecCCccccccccc------
Q 011015 156 EKLIHLKYLNLCGQTEIE--KLPETLCELYNLECLNVSGCWNLRELPRGIGKLR--KLMYLYNEGTSCLRYLPV------ 225 (495)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~--~L~~L~L~~~~~~~~~~~------ 225 (495)
.++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|. +..+ ..+..+. +|+.|+|++|.+...+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456778888888877433 344556677788888888776 4444 2344444 778888888766554442
Q ss_pred -cccCcccccccCe
Q 011015 226 -GIGELISLREVTK 238 (495)
Q Consensus 226 -~i~~l~~L~~L~l 238 (495)
.+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2456677776653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=0.00013 Score=69.83 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCCCCCC--CCCCCccceeecc
Q 011015 316 GPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCEHLPP--LGKLPSLEYLVIE 376 (495)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~ 376 (495)
..+..|+.+.+..+ ... +....+..+.+|+.+.+..+ ...++. +.++++|+.+.+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~--I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTS--IGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTCSSCCEEEECTT-CCE--ECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEEC
T ss_pred cCCccceEEEcCCC-ccE--eCccccceeehhcccccccc--ceecccccccccccccccccc
Confidence 34455555555432 111 22334445555555555432 111111 4455555555553
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=1.3e-06 Score=74.44 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=83.1
Q ss_pred cccchHHhhcCCeeeEEEccCcc-Cccc--cccccccccCcCCcceEecCCCCcccc-----cchhhhccccCcEeecCC
Q 011015 121 SKVLPQLFDKLTCLRALTLETHC-CFDF--IQKIPKNIEKLIHLKYLNLCGQTEIEK-----LPETLCELYNLECLNVSG 192 (495)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~l~~~~-~~~~--~~~l~~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~L~~ 192 (495)
.+.+...+...+.|++|+++ ++ .... ...+...+...++|++|+|++|. ++. +...+...+.|++|+|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~-~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLN-NIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECT-TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEec-CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 34456667889999999999 65 5110 11244556677899999999998 442 344566678899999999
Q ss_pred CcCCcc-----cchhhccCCcccEEec--CCcccccc----ccccccCcccccccCeEEecCc
Q 011015 193 CWNLRE-----LPRGIGKLRKLMYLYN--EGTSCLRY----LPVGIGELISLREVTKFVVGGG 244 (495)
Q Consensus 193 ~~~~~~-----lp~~l~~l~~L~~L~L--~~~~~~~~----~~~~i~~l~~L~~L~l~~~~~~ 244 (495)
|. ++. +...+...++|++|++ ++|.+... +...+...++|++|++..|.+.
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 98 443 4556677889999999 77765433 2333455577888877666543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=1.2e-05 Score=72.05 Aligned_cols=109 Identities=20% Similarity=0.159 Sum_probs=74.3
Q ss_pred cCCCccE--EEEcCCccCcccccchHHhhcCCeeeEEEccCccCccccccccccccCcCCcceEecCCCCcccccchhhh
Q 011015 103 RMRRLRS--LLVEGGDYSWSSKVLPQLFDKLTCLRALTLETHCCFDFIQKIPKNIEKLIHLKYLNLCGQTEIEKLPETLC 180 (495)
Q Consensus 103 ~~~~L~~--L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 180 (495)
..+.|+. +++..|....+...++.....++.|++|+|+ +|....+..++..+..+++|++|+|++|. +..+. .+.
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~ 215 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELD 215 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECT-TSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECC-CCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhh
Confidence 3556665 6677775333333334434678999999999 76622233445667789999999999999 55552 355
Q ss_pred ccc--cCcEeecCCCcCCcccc-------hhhccCCcccEEec
Q 011015 181 ELY--NLECLNVSGCWNLRELP-------RGIGKLRKLMYLYN 214 (495)
Q Consensus 181 ~l~--~L~~L~L~~~~~~~~lp-------~~l~~l~~L~~L~L 214 (495)
.+. +|++|+|++|.....+| ..+..+|+|+.||-
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 555 89999999998544454 23678999999863
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.001 Score=63.56 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=69.6
Q ss_pred hccccccccceEEEEEecCCCCCCccchhHHHhhcCCCCCCcceEEEeeecCcCCCCCCchhhhccccceeeecCccCCC
Q 011015 280 AELEKQKYLVELGLYFDQAGRRENEEDEDERLLEALGPPPNLKKLEIYDYRGRRNVVPINWIMSLTNLRDLSLSKWRNCE 359 (495)
Q Consensus 280 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 359 (495)
..+..+..|+.+.+..+- ..-...++..+.+|+.+.+... ... ++...+..|++|+.+.+.++....
T Consensus 234 ~~f~~~~~L~~i~lp~~v----------~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~ 300 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKNV----------TSIGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIET 300 (379)
T ss_dssp TTTTTCSSCCEEEECTTC----------CEECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCE
T ss_pred ccccCCccceEEEcCCCc----------cEeCccccceeehhcccccccc-cee--ccccccccccccccccccccccce
Confidence 345667788888775431 0111234566788999988654 233 435677899999999998775554
Q ss_pred CCCC-CCCCCccceeeccccccceEeCccccCCCCCCCCCccccCCccceeeec
Q 011015 360 HLPP-LGKLPSLEYLVIELMNSVKRVGNEFLGVESDTDGSSVIAFPKLKLLDFY 412 (495)
Q Consensus 360 ~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 412 (495)
.... +.++.+|+.+.|.. .++.++..... +|.+|+.+.|.
T Consensus 301 I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-----------~C~~L~~i~ip 341 (379)
T 4h09_A 301 LEPRVFMDCVKLSSVTLPT--ALKTIQVYAFK-----------NCKALSTISYP 341 (379)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----------TCTTCCCCCCC
T ss_pred ehhhhhcCCCCCCEEEcCc--cccEEHHHHhh-----------CCCCCCEEEEC
Confidence 3333 88899999999852 35555543322 67888888764
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.13 E-value=0.00013 Score=73.53 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=43.9
Q ss_pred Ccc--cccccCC-CCCHHHHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHHHHHhccce
Q 011015 1 MAQ--GYLNEKE-NKEMQDIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVAQFICRNEC 63 (495)
Q Consensus 1 i~e--g~i~~~~-~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~ 63 (495)
+|+ ||+.+.. +.+.++.++ ||++|++++|++....+ ...+|+|||+++++++.++..++
T Consensus 411 ~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 411 SCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 366 8998877 677888888 99999999999987653 34679999999999998877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.88 E-value=0.0077 Score=50.82 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=62.9
Q ss_pred hhhhcccccCCCccEEEEcCC-ccCcc-cccchHHhhcCCeeeEEEccCccCcccccc-----ccccccCcCCcceEecC
Q 011015 95 IAIWNNVKRMRRLRSLLVEGG-DYSWS-SKVLPQLFDKLTCLRALTLETHCCFDFIQK-----IPKNIEKLIHLKYLNLC 167 (495)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~ 167 (495)
..+...+..-+.|+.|+++++ .+... ...+.+.+..-..|+.|+|+ +|. +.+ +...+..-+.|++|+|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-~n~---igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-NTA---ISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-TSC---CBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-CCC---CChHHHHHHHHHHhcCCccCeEecC
Confidence 334443344667888888775 43111 12244556666777777777 555 332 22333344667777777
Q ss_pred CCCcccc-----cchhhhccccCcEeecCCCcC--Ccc-----cchhhccCCcccEEecCCc
Q 011015 168 GQTEIEK-----LPETLCELYNLECLNVSGCWN--LRE-----LPRGIGKLRKLMYLYNEGT 217 (495)
Q Consensus 168 ~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~--~~~-----lp~~l~~l~~L~~L~L~~~ 217 (495)
+|. ++. +-+.+..-+.|++|+|+++.. ++. +...+..-+.|+.|+++.+
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 777 432 223333445577777765431 221 2233444566667766655
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.03 E-value=0.029 Score=47.31 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=53.8
Q ss_pred ccchHHhhcCCeeeEEEccCccCcccccc-----ccccccCcCCcceEecCCCCccc-----ccchhhhccccCcEeecC
Q 011015 122 KVLPQLFDKLTCLRALTLETHCCFDFIQK-----IPKNIEKLIHLKYLNLCGQTEIE-----KLPETLCELYNLECLNVS 191 (495)
Q Consensus 122 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~L~ 191 (495)
+.+...+..-+.|+.|+|++++. +.. +...+..-..|+.|+|++|. ++ .+...+..-+.|++|+|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~---igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKR---VSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCS---SCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCccEEECCCCCC---CCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecC
Confidence 33445456667788888872224 322 33445555778888888887 44 233444455678888888
Q ss_pred CCcCCcc-----cchhhccCCcccEEecCCc
Q 011015 192 GCWNLRE-----LPRGIGKLRKLMYLYNEGT 217 (495)
Q Consensus 192 ~~~~~~~-----lp~~l~~l~~L~~L~L~~~ 217 (495)
+|. ++. +...+..-+.|+.|+|+++
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 776 432 2233444456777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.15 E-value=0.064 Score=41.97 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=14.6
Q ss_pred CcceEecCCCCcccccch-hhhccccCcEeecCCCc
Q 011015 160 HLKYLNLCGQTEIEKLPE-TLCELYNLECLNVSGCW 194 (495)
Q Consensus 160 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 194 (495)
+|++|+|++|. +..+|. .+..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 34444444444 333332 23344444444444443
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.07 E-value=0.26 Score=38.39 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=34.9
Q ss_pred eEecCCCCccc--ccchhhhccccCcEeecCCCcCCcccchh-hccCCcccEEecCCcc
Q 011015 163 YLNLCGQTEIE--KLPETLCELYNLECLNVSGCWNLRELPRG-IGKLRKLMYLYNEGTS 218 (495)
Q Consensus 163 ~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~ 218 (495)
.++.+++. +. .+|..+ -++|++|+|++|. +..+|.. |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 56666666 44 666432 2357888888887 6666654 5677888888888774
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.26 E-value=0.88 Score=50.43 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHHHHHhccc
Q 011015 15 QDIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVAQFICRNE 62 (495)
Q Consensus 15 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~ 62 (495)
++.+++++++|++++|++... ++...+|+|||+++++++....++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 577899999999999998653 344467999999999999886654
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=69.34 E-value=3.7 Score=41.23 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHHHHH
Q 011015 16 DIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVAQFI 58 (495)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~~~~ 58 (495)
+.+++++++|++++|++... ++....|+||++++++++..
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhh
Confidence 45788999999999998643 23446789999999999877
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=53.98 E-value=7.5 Score=41.64 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCcceeecCCCCCeeeEEeChhHHHHH
Q 011015 16 DIGEEYFNILASSSFFQEFKTDGDGKVYGCKMHDLVHDVA 55 (495)
Q Consensus 16 ~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~hdl~~~~~ 55 (495)
+.++.++++|+++||++.. +....|+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 4689999999999999973 2224689999998865
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.26 E-value=1.2e+02 Score=21.69 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=16.9
Q ss_pred chhhhccccceeeecCccCCCCCC-CCCCCCccceeecc
Q 011015 339 NWIMSLTNLRDLSLSKWRNCEHLP-PLGKLPSLEYLVIE 376 (495)
Q Consensus 339 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 376 (495)
..|..|++|+.+.|-.+ ....-. .+.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44555555665555443 111111 14455555555554
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.85 E-value=67 Score=23.09 Aligned_cols=14 Identities=0% Similarity=-0.040 Sum_probs=6.3
Q ss_pred ccCcCCcceEecCC
Q 011015 155 IEKLIHLKYLNLCG 168 (495)
Q Consensus 155 ~~~l~~L~~L~l~~ 168 (495)
|.++..|+.+.+-.
T Consensus 16 F~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 16 FAGNTVIREITVQP 29 (100)
T ss_dssp TTTCTTCCCEEECT
T ss_pred hcCCCCCcEEEcCC
Confidence 44444444444443
Done!