Citrus Sinensis ID: 011016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIAGTSPVLQANPAALSRSLNFQESS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHcccccccccccccccccccccEEEEccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEEccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHEcccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccHHHHHHcHHHHHccccccccccccccccccccccccccccccccccHHHHccHHHHHccccccccc
Coil and Loop (DISEMBL)
MAEPKDQGIKlfgrtiplpevtpsvgaapsvddridqdptcstnssresdksrdgeerdsekemsvdkpvetkqedeappenseestnpgstsgisenpkaspvekecttvktskteeeqsepstsqektlkkpdkilpcprcnsmdtkfcyynnynvnqprhfckncqrywtaggtmrnvpvgagrrknknsashyRHITVSEALQnvrtdvpngvhhpalktngtvltfgsdaplcESMASVLNIADKtmrnctrngfhkpeELRIRLTyrggengdnyahgspvtvsnskdeagkttsQEAVVQNcqgfpphvacfpgapwpypwnsaqwsppvtppailppgfpmpfyppaaywgctvpgawnipwipqptspktpssapnsptlgkhsreeslvkasnsegqeqhkennaerclwvpktlriddpgdaakssiwttlgikndkadsigrgglFKAFqqkndgrghiagtspvlqanpaalsrslnfqess
Flexible Loop (DISEMBL)
maepkdqgiklfgrtiplpevtpsvgaapsvddridqdptcstnssresdksrdgeerdsekemsvdkpvetkqedeappenseestnpgstsgisenpkaspvekecttvktskteeeqsepstsqektlkkpdkilpCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTmrnctrngfhkpeeLRIRLTYRGGENGDNYAHGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKAsnsegqeqhkennaerclwvpktlriddpgdaakssiwttlgikndkadsigRGGLFKAFQQKNDGRGHIAGtspvlqanpaalsrslnfqess
Low Complexity Region (SEG)
MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVekecttvktskteeeqsepstsqektLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILppgfpmpfyppaayWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIAGTSPVLQANPAALSRSLNFQESS
Disordered region (IsUnstruct)
****************************************************************************************************************************************ILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVG************YRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYR*******************************VVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWI*********************************************RCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAF**********************************
Disordered Region (DISOPRED)
****KDQGIKLFGRTIPLPEV************************************************************************************************************************RCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRN***********************************************************************************************************************************FPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAW*****************************************************WVPKTLRIDDPGDAAKSSIWTTLGIKNDKA*****************************QANPAALSRSLNF****
Disordered Region (DISEMBL)
MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQ***********************************************************************************************KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAG********SHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPV****************AVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQP***************************************NAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIAGTSPVLQANPAALS*********
Disordered Region (DISPRO)
****KDQGIKLFGRTIPLPEV*************************************************************************************************************LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVG***************************************TNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRN*F***********************************************NCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWIP*******************************************ERCLWVPKTLRIDDPGDAAKSSIWTTLGIKND************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIAGTSPVLQANPAALSRSLNFQESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q93ZL5	457	Cyclic dof factor 2 OS=Ar	yes	no	0.858	0.929	0.453	3e-99
Q8LFV3	448	Cyclic dof factor 3 OS=Ar	no	no	0.864	0.955	0.437	1e-86
Q8W1E3	298	Cyclic dof factor 1 OS=Ar	no	no	0.539	0.895	0.392	1e-57
Q9SEZ3	399	Cyclic dof factor 5 OS=Ar	no	no	0.761	0.944	0.341	3e-46
Q9LQX4	366	Dof zinc finger protein D	no	no	0.565	0.765	0.341	5e-39
P68350	175	Dof zinc finger protein D	no	no	0.121	0.342	0.85	3e-28
O22967	170	Cyclic dof factor 4 OS=Ar	no	no	0.161	0.470	0.626	3e-27
Q8LDR0	307	Dof zinc finger protein D	no	no	0.117	0.188	0.741	2e-22
Q84TE9	257	Dof zinc finger protein D	no	no	0.159	0.307	0.575	1e-21
Q9M2U1	323	Dof zinc finger protein D	no	no	0.139	0.213	0.608	2e-21

>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2

 Score =  362 bits (930), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 239/527 (45%), Positives = 298/527 (56%), Gaps = 102/527 (19%)

Query: 1   MAEPKDQGIKLFGRTIPLPEV------TPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRD 54
           MA+P    IKLFG+TIPLPE+      +   G        +    +C+ +   E      
Sbjct: 1   MADP---AIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSG 57

Query: 55  GEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGS------TSGISENPKASPVEKEC 108
               + +         ET +++E   E  EES    S      TSGI+E  +        
Sbjct: 58  LGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTE-------- 109

Query: 109 TTVKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNC 168
            T K +KT EE    + SQE  LKKPDKILPCPRCNSM+TKFCYYNNYNVNQPRHFCK C
Sbjct: 110 -TTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKC 168

Query: 169 QRYWTAGGTMRNVPVGAGRRKNKNSASHY-RHITVS--EALQNV-RTDV--PNGVHHPAL 222
           QRYWTAGGTMRNVPVGAGRRKNK+ ASHY RH++++  EA+Q V RTD+  PNG +    
Sbjct: 169 QRYWTAGGTMRNVPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDLQHPNGAN---- 224

Query: 223 KTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYA 282
                +LTFGSD+ LCESMAS LN+ +K++   T+    +P E  +++T           
Sbjct: 225 -----LLTFGSDSVLCESMASGLNLVEKSLLK-TQTVLQEPNE-GLKIT----------- 266

Query: 283 HGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAP--WPYPWNSAQWSPPVTPP 340
               V ++ + +EAG  +             P V CFPG P  WPY WN   W+      
Sbjct: 267 ----VPLNQTNEEAGTVSPL-----------PKVPCFPGPPPTWPYAWNGVSWT------ 305

Query: 341 AILPPGFPMPFYPPAAYWGC--TVPGAWN-IPWIPQPTSPKTPSSAPNSPTLGKHSREES 397
                   +PFYPP AYW C    PGAWN   W+PQP SP    S PNSPTLGKHSR+E+
Sbjct: 306 -------ILPFYPPPAYWSCPGVSPGAWNSFTWMPQPNSPS--GSNPNSPTLGKHSRDEN 356

Query: 398 LVK------ASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDK-AD 450
             +       + S G+E+ K    ERCLWVPKTLRIDDP +AAKSSIW TLGIK D+ AD
Sbjct: 357 AAEPGTAFDETESLGREKSK---PERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENAD 413

Query: 451 SIGRGGLFKAFQQKND--GRGHIAGTSPVLQANPAALSRSLNFQESS 495
           +    G F++  ++      G + G  P LQANPAALSRS NF ESS
Sbjct: 414 TF---GAFRSSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHESS 457

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2

 Score =  320 bits (821), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 223/510 (43%), Positives = 281/510 (55%), Gaps = 82/510 (16%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDS 60
           M E +D  IKLFG  IP P V  S   A +V+D              E D    G+++  
Sbjct: 2   MMETRDPAIKLFGMKIPFPSVFES---AVTVEDD-------------EEDDWSGGDDKSP 45

Query: 61  EKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTT---VKTSKTE 117
           EK                 PE S+++ N  + +  + +   +  ++E T+   +++S T 
Sbjct: 46  EK---------------VTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTP 90

Query: 118 EEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGT 177
           E+  + +T   KTLKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGT
Sbjct: 91  EDNQQ-TTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGT 149

Query: 178 MRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAP- 236
           MRNVPVGAGRRKNK+S+SHYRHIT+SEAL+  R D       P L+ N  VL+FG +A  
Sbjct: 150 MRNVPVGAGRRKNKSSSSHYRHITISEALEAARLD-------PGLQANTRVLSFGLEAQQ 202

Query: 237 --LCESMASVLNIA-DKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSK 293
             +   M  V+ +  D+ + N  RN FH   + R+       ENGD+ + GS VT SN+ 
Sbjct: 203 QHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARV---ENGDDCSSGSSVTTSNNH 259

Query: 294 DEAGKTTSQEAVVQNCQGFPPH------VACFPGAPWPYPWNSAQWSPPVTPPAILPPGF 347
               ++ +Q   V   Q    +       AC PG PWPY WN A       P    PPG+
Sbjct: 260 -SVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWNPAM----PPPGFYPPPGY 314

Query: 348 PMPFYPPAAYWGCTVPGAWNIPWIP--QPTSPKTPS-SAPNSPTLGKHSREESLVKASNS 404
           PMPFYP            W IP +P  Q +SP +   S  NSPTLGKH R+E   K  N 
Sbjct: 315 PMPFYP-----------YWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNE 363

Query: 405 EGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQK 464
             ++Q        C+ VPKTLRIDDP +AAKSSIWTTLGIKN+       GG+FK F  K
Sbjct: 364 TERKQKAG-----CVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAM--CKAGGMFKGFDHK 416

Query: 465 NDGRGH-IAGTSPVLQANPAALSRSLNFQE 493
                +  A  SPVL ANPAALSRS NF E
Sbjct: 417 TKMYNNDKAENSPVLSANPAALSRSHNFHE 446

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/395 (39%), Positives = 194/395 (49%), Gaps = 128/395 (32%)

Query: 109 TTVKTSKTEEEQSEPST-----SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRH 163
           T ++ +  EEE+++  T      ++KTLKKP KILPCPRCNSM+TKFCYYNNYNVNQPRH
Sbjct: 20  TVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRH 79

Query: 164 FCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA--SHYRHITVSEALQNVRTDVPNGVHHPA 221
           FCK CQRYWT+GGTMR+VP+GAGRRKNKN++  SHY H+T+SE                 
Sbjct: 80  FCKACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISE----------------- 122

Query: 222 LKTNGTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNY 281
             TNG VL+F               + D    +  R G  K   L  R+      + +N 
Sbjct: 123 --TNGPVLSFS--------------LGDDQKVSSNRFGNQK---LVARIENNDERSNNNT 163

Query: 282 AHGSPVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPA 341
           ++G                               + CFPG  WPY WN A          
Sbjct: 164 SNG-------------------------------LNCFPGVSWPYTWNPA---------- 182

Query: 342 ILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKA 401
                    FYP   YW                    +P S+  + TLGKHSR+E     
Sbjct: 183 ---------FYPVYPYWSM--------------PVLSSPVSSSPTSTLGKHSRDE----- 214

Query: 402 SNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAF 461
              E  +Q + N +   + VPKTLRIDDP +AAKSSIWTTLGIKN+         +F  F
Sbjct: 215 --DETVKQKQRNGS---VLVPKTLRIDDPNEAAKSSIWTTLGIKNEV--------MFNGF 261

Query: 462 QQKNDGR---GHIAGTSPVLQANPAALSRSLNFQE 493
             K + +        TS VL ANPAALSRS+NF E
Sbjct: 262 GSKKEVKLSNKEETETSLVLCANPAALSRSINFHE 296

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 243/513 (47%), Gaps = 136/513 (26%)

Query: 1   MAEPKDQGIKLFGRTI-PLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERD 59
           M++ +D  IKLFGRTI  L +V        +  D     P    +S    + S       
Sbjct: 1   MSKSRDTEIKLFGRTITSLLDV--------NCYDPSSLSPVHDVSSDPSKEDSSSSSSSC 52

Query: 60  SEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTSKTE-E 118
           S     +  PV+  +++      S +  +P   S ++E PKA     E ++ ++SK   +
Sbjct: 53  SPTIGPIRVPVKKSEQE------SNKFKDPYILSDLNEPPKAV---SEISSPRSSKNNCD 103

Query: 119 EQSEPSTS---------QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQ 169
           +QSE +T+         +   LKKPDK++PCPRC S +TKFCYYNNYNVNQPR+FC+NCQ
Sbjct: 104 QQSEITTTTTTSTTSGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQ 163

Query: 170 RYWTAGGTMRNVPVGAGRRKNKN--SASHYRHITVSEALQNVRTDVPNGVHHPALKTNGT 227
           RYWTAGG+MRNVPVG+GRRKNK   S++HY  +T  +   N                +GT
Sbjct: 164 RYWTAGGSMRNVPVGSGRRKNKGWPSSNHYLQVTSEDCDNN---------------NSGT 208

Query: 228 VLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPV 287
           +L+FGS      S +SV           T  G H              ++GD        
Sbjct: 209 ILSFGS------SESSV-----------TETGKH--------------QSGD-------- 229

Query: 288 TVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFP--GAPWPYPWNSAQWSPPVTPPAILPP 345
           T   S D    + SQE   ++ QGF P     P   +PWPY W+              P 
Sbjct: 230 TAKISAD----SVSQEN--KSYQGFLPPQVMLPNNSSPWPYQWS--------------PT 269

Query: 346 GFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSE 405
           G    FYP   YWGCTVP          PTS         S  LGK SR++       +E
Sbjct: 270 GPNASFYPVPFYWGCTVP--------IYPTS-------ETSSCLGKRSRDQ-------TE 307

Query: 406 GQ--EQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQ 463
           G+  + +      R   V ++LR++   +A+KS++W+ L  K +K        LF  F  
Sbjct: 308 GRINDTNTTITTTRARLVSESLRMNI--EASKSAVWSKLPTKPEKKTQ--GFSLFNGFDT 363

Query: 464 K-NDGRGHIAG-TSPVLQANPAALSRSLNFQES 494
           K N  R  +   TS  LQANPAA+SR++NF+ES
Sbjct: 364 KGNSNRSSLVSETSHSLQANPAAMSRAMNFRES 396

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 177/387 (45%), Gaps = 107/387 (27%)

Query: 116 TEEEQSEPST---SQEKT--LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 170
           ++++ SE +T    +EKT  LKKPDKILPCPRCNS DTKFCYYNNYNVNQPRHFC+ CQR
Sbjct: 78  SDDQHSEITTITSEEEKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQR 137

Query: 171 YWTAGGTMRNVPVGAGRRKNKN--SASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTV 228
           YWTAGG+MR VPVG+GRRKNK   S+  Y HIT SE   N  +            ++  +
Sbjct: 138 YWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHIT-SEDTDNYNS------------SSTKI 184

Query: 229 LTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVT 288
           L+F S   L                  T    H+  E++I              +  PV 
Sbjct: 185 LSFESSDSL-----------------VTERPKHQSNEVKI--------------NAEPV- 212

Query: 289 VSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFP 348
                       SQE    N QG  P  A     PWPY +          PP   P  + 
Sbjct: 213 ------------SQEP--NNFQGLLPPQASPVSPPWPYQY----------PPN--PSFYH 246

Query: 349 MPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSAPNSPTLGKHSREESLVKASNSEGQE 408
           MP      YWGC +P  W              S+   S  LGK +R+E+      S    
Sbjct: 247 MP-----VYWGCAIP-VW--------------STLDTSTCLGKRTRDET------SHETV 280

Query: 409 QHKENNAERCLWVPKTLRI-DDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDG 467
           +  +N  ER   + ++  I ++   A  + +W  + +  +K             + K+  
Sbjct: 281 KESKNAFERTSLLLESQSIKNETSMATNNHVWYPVPMTREKTQEF--SFFSNGAETKSSN 338

Query: 468 RGHIAGTSPVLQANPAALSRSLNFQES 494
              +  T   LQANPAA++RS+NF+ES
Sbjct: 339 NRFVPETYLNLQANPAAMARSMNFRES 365

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 57/60 (95%)

Query: 132 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 191
           K+PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct: 56  KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1

 Score =  123 bits (309), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 65/91 (71%), Gaps = 11/91 (12%)

Query: 112 KTSKTEEEQSEP-----------STSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQ 160
           +T K EEE   P           S+S     K+PDKI+ CPRC SM+TKFCY+NNYNVNQ
Sbjct: 21  RTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSMETKFCYFNNYNVNQ 80

Query: 161 PRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 191
           PRHFCK C RYWTAGG +RNVPVGAGRRK+K
Sbjct: 81  PRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 50/58 (86%)

Query: 138 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAS 195
           L CPRCNS++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK K S +
Sbjct: 51  LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKT 108

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 117 EEEQSEPSTSQEKTLKKPDKI-LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAG 175
           + +Q +PS +   T  +P ++ L CPRC+S +TKFCYYNNY++ QPR+FCK+C+RYWT G
Sbjct: 33  DNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKG 92

Query: 176 GTMRNVPVGAGRRKNKNSAS 195
           GT+RN+PVG G RKNK S S
Sbjct: 93  GTLRNIPVGGGCRKNKRSTS 112

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 53/69 (76%)

Query: 134 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 193
           P+  L CPRC+S +TKFCY+NNY++ QPRHFCK C+RYWT GG++RNVPVG G R+NK S
Sbjct: 72  PEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRS 131

Query: 194 ASHYRHITV 202
            S  +   V
Sbjct: 132 KSRSKSTVV 140

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
225452849	511	PREDICTED: dof zinc finger protein DOF5.	0.995	0.964	0.705	0.0
255582115	497	zinc finger protein, putative [Ricinus c	0.985	0.981	0.694	0.0
256387098	518	Dof3 protein [Jatropha curcas]	0.991	0.947	0.675	0.0
224080147	503	predicted protein [Populus trichocarpa]	0.993	0.978	0.695	0.0
224140999	506	predicted protein [Populus trichocarpa]	0.989	0.968	0.682	0.0
356567050	501	PREDICTED: dof zinc finger protein DOF5.	0.991	0.980	0.665	1e-174
356529926	503	PREDICTED: dof zinc finger protein DOF5.	1.0	0.984	0.642	1e-170
449522978	502	PREDICTED: dof zinc finger protein DOF5.	0.989	0.976	0.599	1e-158
449459536	502	PREDICTED: dof zinc finger protein DOF5.	0.991	0.978	0.602	1e-157
225457399	473	PREDICTED: dof zinc finger protein DOF3.	0.947	0.991	0.597	1e-153

>gi|225452849|ref|XP_002283706.1| PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/513 (70%), Positives = 406/513 (79%), Gaps = 20/513 (3%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPS---------VDDRIDQDPTCSTNSSRESDK 51
           MAE KD  IKLFG+TIPLPEV  +     S          +D +DQ+   +TNSS E D 
Sbjct: 1   MAEAKDPAIKLFGKTIPLPEVATAAAGNDSPSGATVGGGGEDWVDQNR--ATNSSPEEDC 58

Query: 52  SRDGEE-RDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTT 110
            R GEE R+ +K+ S  K  +T+QED A    SEE T+P + SG++ENPK    +KE  T
Sbjct: 59  VRAGEEGREVDKDTSGGKVTDTRQEDGARSSTSEEFTDPDANSGVNENPKTPSADKETAT 118

Query: 111 VKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 170
           +K SK EEEQSE S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR
Sbjct: 119 LKCSKNEEEQSETSISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 178

Query: 171 YWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLT 230
           YWTAGGTMRNVPVGAGRRKNKNS SHYRHITVSEALQ+ RTDVPNG+HHPALKTNGTVLT
Sbjct: 179 YWTAGGTMRNVPVGAGRRKNKNSTSHYRHITVSEALQSARTDVPNGIHHPALKTNGTVLT 238

Query: 231 FGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVS 290
           FGSD PLCESMASVLN+A+KTMRNCT NGFHKPE+LRI + Y GGENGD++   S VT S
Sbjct: 239 FGSDTPLCESMASVLNLAEKTMRNCTPNGFHKPEKLRIPVPYGGGENGDDHLSKSSVTAS 298

Query: 291 NSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWS------PPVTPPAILP 344
           NSK+EAGKT   + V++NC  FPP + CFPGAPWPYPWNSAQWS      PPV PPA  P
Sbjct: 299 NSKEEAGKTALPDQVMRNCHAFPPQIPCFPGAPWPYPWNSAQWSPPVPAIPPVPPPAFCP 358

Query: 345 PGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPK--TPSSAPNSPTLGKHSREESLVKAS 402
            GFPMPFYP AAYWGCTVPGAWNIPW+PQP++     PSS PNSPTLGKHSR+E+++KAS
Sbjct: 359 SGFPMPFYPAAAYWGCTVPGAWNIPWVPQPSALNHTAPSSGPNSPTLGKHSRDENMLKAS 418

Query: 403 NSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQ 462
           N   +E  KENN+ERCLW+PKTLRIDDPG+AA+SSIW TLGIKNDKAD I  G LFK+FQ
Sbjct: 419 NFGEEELQKENNSERCLWIPKTLRIDDPGEAARSSIWATLGIKNDKADPISGGRLFKSFQ 478

Query: 463 QKNDGRGHIAGTSPVLQANPAALSRSLNFQESS 495
            K D + HIA TSPVLQANPAALSRSLNF ESS
Sbjct: 479 SKADEKNHIAETSPVLQANPAALSRSLNFHESS 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582115|ref|XP_002531852.1| zinc finger protein, putative [Ricinus communis] gi|223528502|gb|EEF30530.1| zinc finger protein, putative [Ricinus communis]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/504 (69%), Positives = 404/504 (80%), Gaps = 16/504 (3%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSV------DDRIDQD-PTCSTNSSRESDKSR 53
           M+EPKD  IKLFG+ IP PE++ S  AA S       DD  D++ P+C+++S  E D + 
Sbjct: 1   MSEPKDPAIKLFGKMIPFPEISTSTAAAASATTCSADDDCQDRERPSCASSSLEEGDTTG 60

Query: 54  DGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKT 113
           DGEER+S+K+   +   E+KQE+      SEES+NP S SGI+ENPK S VEK+  T KT
Sbjct: 61  DGEERESDKDAEGETLAESKQEN-----GSEESSNPDSISGITENPKTSSVEKD-DTSKT 114

Query: 114 SKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT 173
           SKTEEEQS+ S SQEKT KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT
Sbjct: 115 SKTEEEQSDTSNSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT 174

Query: 174 AGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGS 233
           AGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNV+ D+PNG+HHPALK+NGT LTFGS
Sbjct: 175 AGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVQNDIPNGIHHPALKSNGTFLTFGS 234

Query: 234 DAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSK 293
           D PL ES+AS LN+ADKT++NCTRNGFHKPE LRI ++Y G E+GD ++ GS  T SNSK
Sbjct: 235 DTPLHESVASALNLADKTVQNCTRNGFHKPEALRIPVSYAGVEHGDAHSKGSLATASNSK 294

Query: 294 DEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYP 353
           DEA K+  Q  V+QNCQGFPP + C+PG PWPYPWNSAQWS PV P A  PPGFPMPFYP
Sbjct: 295 DEASKSGPQATVIQNCQGFPPQIPCYPGTPWPYPWNSAQWSSPVPPTAFCPPGFPMPFYP 354

Query: 354 PAAYWGCTVPGAWNIPWIPQPTSPK--TPSSAPNSPTLGKHSREESLVKASNSEGQEQHK 411
             AYWGCTVPG WN+ WIPQP SP     +S PNSPTLGKHSR+++++K SNS G+   K
Sbjct: 355 TTAYWGCTVPGTWNMSWIPQPPSPNETASTSGPNSPTLGKHSRDDNMLKPSNS-GETPEK 413

Query: 412 ENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHI 471
           E +AERCLW+PKTLRIDDPG+AAKSSIWTTLGIKND+ DSIG  GLFKAF+ K + + H 
Sbjct: 414 EKSAERCLWIPKTLRIDDPGEAAKSSIWTTLGIKNDRPDSIGGRGLFKAFESKGNEKNHA 473

Query: 472 AGTSPVLQANPAALSRSLNFQESS 495
           A TS VLQANPAALSRSL F+ESS
Sbjct: 474 AETSSVLQANPAALSRSLKFRESS 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256387098|gb|ACU80551.1| Dof3 protein [Jatropha curcas]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/520 (67%), Positives = 402/520 (77%), Gaps = 29/520 (5%)

Query: 1   MAEPKDQGIKLFGRTIPLPEV------TPSVGAAPSVDDRIDQD--------PTCSTNSS 46
           M+EPKD  IKLFG+TIPLPE+      T +  AA S    I  D        PTC+++S 
Sbjct: 1   MSEPKDPAIKLFGKTIPLPEISHGGTGTSTASAATSGGGSISMDDDSQDQDRPTCASSSL 60

Query: 47  RESD-KSRDGEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVE 105
            ES+ K  DGEER+S+K+   + P+E+KQE+  P   +EES+NP   +GIS+NPK S VE
Sbjct: 61  EESNTKGGDGEERESDKDAGGETPLESKQENGTPTVTAEESSNP--DAGISDNPKTSSVE 118

Query: 106 KECTTVKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 165
           K+ +T +TSKTEEEQS+ S SQEKT KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC
Sbjct: 119 KDNSTSQTSKTEEEQSDTSNSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 178

Query: 166 KNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTN 225
           KNCQRYWTAGGTMRNVPVGAGRRKNKNS SHYRHITVSEALQNV TD+PNGVHHPALK+N
Sbjct: 179 KNCQRYWTAGGTMRNVPVGAGRRKNKNSGSHYRHITVSEALQNVGTDIPNGVHHPALKSN 238

Query: 226 GTVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGS 285
           GTVLTFGSD PL ESMASVLN+A+KTM+N  RNGFHKPE LRI ++Y G   GD+ ++G 
Sbjct: 239 GTVLTFGSDTPLHESMASVLNLAEKTMQNSPRNGFHKPEALRIPVSYGGVGKGDDNSNGP 298

Query: 286 PVTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWS-----PPVTPP 340
            V  SNSKD+A K  SQE +V+N Q F P V CFPG PWPYPWNSAQWS      PVTPP
Sbjct: 299 SVMASNSKDDANKIGSQETMVRNGQSFQPQVPCFPGTPWPYPWNSAQWSSATCLSPVTPP 358

Query: 341 AILPPGFPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPK------TPSSAPNSPTLGKHSR 394
           A  PPGFPMPFYP AAYWGCTVPG WN+PWIPQP+SP         SS PNSPTLGKHSR
Sbjct: 359 AFCPPGFPMPFYPTAAYWGCTVPGTWNMPWIPQPSSPNQTATQTATSSGPNSPTLGKHSR 418

Query: 395 EESLVKASNSEGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGR 454
           +E++ K +NS G+E  KENNAERC+W+PKTLRIDDPG+AAKSSIWTTLGI NDK D +G 
Sbjct: 419 DENVQKPNNS-GEEPGKENNAERCIWIPKTLRIDDPGEAAKSSIWTTLGITNDKVDFVGG 477

Query: 455 GGLFKAFQQKNDGRGHIAGTSPVLQANPAALSRSLNFQES 494
            GLFKAF+ K D +      SP+L ANPAALSRSL F+ES
Sbjct: 478 RGLFKAFESKGDEKHRTTEASPLLNANPAALSRSLKFRES 517

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080147|ref|XP_002306032.1| predicted protein [Populus trichocarpa] gi|222848996|gb|EEE86543.1| predicted protein [Populus trichocarpa]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/503 (69%), Positives = 405/503 (80%), Gaps = 11/503 (2%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQD-PTCSTNSSRESD----KSRDG 55
           M EPKD  IKLFG+TI + E++ +       DD  DQD P+C+++S  ++D    K   G
Sbjct: 1   MLEPKDPAIKLFGKTIQVTEISSTTTT--DNDDSQDQDRPSCASSSLYDADSDNNKRYHG 58

Query: 56  EER-DSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTS 114
           EE  +++ + SV+K +  KQED   P  +EE +NP +TSG SENPK   +EKE   ++TS
Sbjct: 59  EEDIEADDKDSVEKSLTEKQEDGVSPVATEEPSNPDATSGTSENPKTPSIEKESEGLQTS 118

Query: 115 KTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA 174
           +TEEE S+ S S EKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA
Sbjct: 119 RTEEEDSDTSNSPEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA 178

Query: 175 GGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSD 234
           GGTMRNVPVGAGRRKNKNSASHYRHIT+ EALQNVR DVPNGV+HP++KTNGTVLTFGSD
Sbjct: 179 GGTMRNVPVGAGRRKNKNSASHYRHITIPEALQNVRADVPNGVYHPSMKTNGTVLTFGSD 238

Query: 235 APLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKD 294
            PL ESMASVLN+ADKT RNCTRNG HKP+ +RI ++Y  GENGD++++GS VTVSNS D
Sbjct: 239 TPLHESMASVLNLADKTTRNCTRNGSHKPDAVRIPVSYGSGENGDDHSNGSSVTVSNSID 298

Query: 295 EAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPP 354
           EAGK+ S+E+ +QNCQGFPP + CFPG PWPYPWNSAQWS P+ PPA  PPGFPMPFYP 
Sbjct: 299 EAGKSMSKESAMQNCQGFPPEIPCFPGVPWPYPWNSAQWSSPLPPPAFCPPGFPMPFYPA 358

Query: 355 AAYWGCTVPGAWNIPWIPQP--TSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKE 412
           AAYWGCTVPGAWNIPW+PQP      + SS PNSPTLGKHSR+E+++K+SNSE  E  KE
Sbjct: 359 AAYWGCTVPGAWNIPWLPQPSSPKQTSSSSGPNSPTLGKHSRDENMLKSSNSEEGESAKE 418

Query: 413 NNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIA 472
           NN ERCLW+PKTLRI DPG+AAKSSIWTTLGIKNDK D IG  GLFKAF  K + + H A
Sbjct: 419 NNTERCLWIPKTLRIVDPGEAAKSSIWTTLGIKNDKPDLIGGRGLFKAFDSKVE-KNHEA 477

Query: 473 GTSPVLQANPAALSRSLNFQESS 495
            TSPVLQANPAALSRSL FQESS
Sbjct: 478 ETSPVLQANPAALSRSLKFQESS 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140999|ref|XP_002323863.1| predicted protein [Populus trichocarpa] gi|222866865|gb|EEF03996.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/511 (68%), Positives = 400/511 (78%), Gaps = 21/511 (4%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVT----PSVGAAPSVDDRIDQDPTCSTNSSRES------- 49
           M+EPKDQ  KLFG+TI +PE++     +       D +    P+C+ +S  E+       
Sbjct: 1   MSEPKDQAFKLFGKTIQVPEISVTTATTTDDDDDDDSQDQDRPSCANSSLDETNITDDYN 60

Query: 50  --DKSRDGEE-RDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEK 106
             DK   GEE  +++ + SV K     QED A P  ++ES+N  +TSG SENPK   VEK
Sbjct: 61  NNDKRDHGEEDTETDDKDSVGKTTIENQEDGASPVAAKESSNLDATSGTSENPKTPSVEK 120

Query: 107 ECTTVKTSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCK 166
           E T +KTS TEEEQS+ S SQEKTLKKPDKI+PCPRCNSMDTKFCYYNNYNVNQPRHFCK
Sbjct: 121 ESTALKTSNTEEEQSDTSNSQEKTLKKPDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCK 180

Query: 167 NCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNG 226
           NCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHIT+ EALQN R DVPNGVHHP+LKTNG
Sbjct: 181 NCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITIPEALQNGRADVPNGVHHPSLKTNG 240

Query: 227 TVLTFGSDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSP 286
           TVLTFGSDAPL ESMASVLN+ADKTMRNCT NGFHKPE LR+ ++Y GGENGD++++GS 
Sbjct: 241 TVLTFGSDAPLHESMASVLNLADKTMRNCTMNGFHKPEALRVPVSYGGGENGDDHSNGSS 300

Query: 287 VTVSNSKDEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPG 346
           VTVSNS DEAGK+ S+E+ +QN QG+PP + CFPG PWPYPWNSAQWS PV PPA  P  
Sbjct: 301 VTVSNSSDEAGKSVSKESAMQNYQGYPPQIPCFPGVPWPYPWNSAQWSSPVPPPAFCPSS 360

Query: 347 FPMPFYPPAAYWGCTVPGAWNIPWIPQPTSPKTPSSA--PNSPTLGKHSREESLVKASNS 404
           FPMPFYP AAYWGCTVPGAWN+PW+PQP+SPK  SS+  PNSPTLGKHSR+E+L+K SNS
Sbjct: 361 FPMPFYPAAAYWGCTVPGAWNVPWLPQPSSPKQTSSSSDPNSPTLGKHSRDENLLKPSNS 420

Query: 405 EGQEQHKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQK 464
               + +  N ERCLW+PKTLRIDDPG+AAKSSIWTTLGIKNDK  S G  GLFKAF  K
Sbjct: 421 ----KEELVNTERCLWIPKTLRIDDPGEAAKSSIWTTLGIKNDKPGSFGGRGLFKAFDSK 476

Query: 465 NDGRGHIAGTSPVLQANPAALSRSLNFQESS 495
            + +   A TSPVL ANPAALSRSL FQESS
Sbjct: 477 VE-KNRAAETSPVLHANPAALSRSLKFQESS 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567050|ref|XP_003551736.1| PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 336/505 (66%), Positives = 383/505 (75%), Gaps = 14/505 (2%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPS------VDDRIDQDPTCSTNSSRESDKSRD 54
           M+E KD  IKLFG+TIP+PE+      AP+      VDD +D     STNSSRES   RD
Sbjct: 1   MSEVKDPAIKLFGKTIPVPEIPRGSAGAPASSSGDVVDDSVD---ASSTNSSRESHTKRD 57

Query: 55  GEERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTS 114
              +D +K+   +KP + K+ED AP ++SEE TN  + SG  E   A   E+E TT+KT+
Sbjct: 58  ALGKDVDKDTLGEKPTDDKKEDGAPTQSSEEVTNLDTASGSCEESVALSTEREATTLKTT 117

Query: 115 KTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA 174
           KTEEEQSE S SQ+K LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA
Sbjct: 118 KTEEEQSETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA 177

Query: 175 GGTMRNVPVGAGRRKNKNSASHYRHITVSEA-LQNVRTDVPNGVHHPALKTNGTVLTFGS 233
           GGTMRNVPVGAGRRKNK+SASHYR ITVSEA LQN RTD+PNG +HP+LK NGTVLTFG+
Sbjct: 178 GGTMRNVPVGAGRRKNKSSASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGT 237

Query: 234 DAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSK 293
           D PLCESMASVLN+ADKTM N TRNGFHKPEELRI + +  GE GD+ ++ S VT + S 
Sbjct: 238 DTPLCESMASVLNLADKTMPNYTRNGFHKPEELRIPVPHASGEKGDDQSNKSSVTSTTSV 297

Query: 294 DEAGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYP 353
           + A     +E VVQNCQ FPP V  FPG PWP PWN  QWS PV PPA  PPGF MPFYP
Sbjct: 298 EGAITNGPKEQVVQNCQSFPPQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYP 357

Query: 354 PAAYWGCTVPGAWNIPWIPQPTSPK--TPSSAPNSPTLGKHSREESLVKASNSEGQEQH- 410
             AYWGC VPG WNIPW+ QP+SP   TP+S PNSPTLGKHSRE+S  K++ S G++ H 
Sbjct: 358 ATAYWGCAVPGTWNIPWLVQPSSPNGATPNSGPNSPTLGKHSREDSTFKSNESGGEDGHS 417

Query: 411 KENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGH 470
           KENN E+ LWVPKTLRIDD  +AAKSSIW TLGIKNDKADS+  G LFKAF  K+D + H
Sbjct: 418 KENNKEKSLWVPKTLRIDD-SEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNH 476

Query: 471 IAGTSPVLQANPAALSRSLNFQESS 495
               SPVLQANPAALSRSLNF E+S
Sbjct: 477 SMQASPVLQANPAALSRSLNFHETS 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529926|ref|XP_003533537.1| PREDICTED: dof zinc finger protein DOF5.2-like [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 323/503 (64%), Positives = 374/503 (74%), Gaps = 8/503 (1%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCS----TNSSRESDKSRDGE 56
           M+E KD  IKLFG+TIP+PE+ P    AP+                TNSSRES  + D +
Sbjct: 1   MSEAKDPAIKLFGKTIPVPEILPGSNGAPASSSGDVVVDDSVDASSTNSSRESHTNTDAQ 60

Query: 57  ERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTSKT 116
           E+D +K+   +KP + K+ED AP ++SEE  NP + SG  E       E+E TT+KT+KT
Sbjct: 61  EKDFDKDTLGEKPTDDKKEDGAPAQSSEEVANPDTASGTCEESIIQSTEREATTLKTTKT 120

Query: 117 EEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGG 176
           EEEQ E S SQ+K LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGG
Sbjct: 121 EEEQGETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGG 180

Query: 177 TMRNVPVGAGRRKNKNSASHYRHITVSEA-LQNVRTDVPNGVHHPALKTNGTVLTFGSDA 235
           TMRNVPVGAGRRKNK+ ASHYR ITVSEA LQN RTD+PNG +HP+LK NGTVLTFG+D 
Sbjct: 181 TMRNVPVGAGRRKNKSVASHYRQITVSEAALQNPRTDLPNGAYHPSLKCNGTVLTFGTDT 240

Query: 236 PLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKDE 295
           PLCESMASVLN+ADKTM N TRNGFHKPEELRI +++  GE GD+ ++ S VT + S + 
Sbjct: 241 PLCESMASVLNLADKTMHNYTRNGFHKPEELRIPVSHASGEKGDDQSNKSSVTSTTSVEG 300

Query: 296 AGKTTSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPA 355
           A     +E V+QNCQ  P  V  FPG PWP PWN  QWS PV PPA  PPGF MPFYP  
Sbjct: 301 ASTNRPKEQVMQNCQSSPSQVPYFPGTPWPIPWNPVQWSSPVPPPAFCPPGFTMPFYPAT 360

Query: 356 AYWGCTVPGAWNIPWIPQPTSPK--TPSSAPNSPTLGKHSREESLVKASNSEGQEQH-KE 412
           AYWGC +PG WNIPW+ QP+SP   TP+S PNSPTLGKHSRE+   K + S G++ H KE
Sbjct: 361 AYWGCAMPGTWNIPWLAQPSSPNGATPNSGPNSPTLGKHSREDYTFKPNESGGEDGHSKE 420

Query: 413 NNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIA 472
           NN E+ LWVPKTLRIDD G+AAKSSIW TLGIKNDKADS+  G LFKAF  K+D + H  
Sbjct: 421 NNKEKSLWVPKTLRIDDSGEAAKSSIWATLGIKNDKADSVPGGTLFKAFPSKHDDKNHSM 480

Query: 473 GTSPVLQANPAALSRSLNFQESS 495
            +S VL ANPAALSRSLNF E+S
Sbjct: 481 QSSRVLLANPAALSRSLNFHETS 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522978|ref|XP_004168502.1| PREDICTED: dof zinc finger protein DOF5.2-like [Cucumis sativus]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 304/507 (59%), Positives = 357/507 (70%), Gaps = 17/507 (3%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRIDQDPTCSTNSSRESDKSRDGEERDS 60
           M+EPKD  IKLFG+TIPLP+ +P+    PS    +      +   + + D S    + D+
Sbjct: 1   MSEPKDPAIKLFGKTIPLPDPSPATPHLPSSLPILSPPHHTTPLPNHDHDSSSSTFDVDA 60

Query: 61  EKEMSVDKPVETKQEDEAPPEN--------SEESTNPGSTSGISENPKASPVEKECTTVK 112
           E ++ +DK   +++   A  EN        +EE TN  ++   SEN K   +  + +   
Sbjct: 61  E-DLELDKDAVSEKSGGAKLENGDGGLSVSTEEFTNSDTSVVRSENSKV--LSGDESNPS 117

Query: 113 TSKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYW 172
           T+   +EQ+E S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYW
Sbjct: 118 TTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYW 177

Query: 173 TAGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFG 232
           TAGGTMRNVPVGAGRRKNK+SASH+R I VSEALQ+ RTDVPNG+HH  LK N  VL FG
Sbjct: 178 TAGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVPNGIHHSTLKPNANVLAFG 237

Query: 233 SDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNS 292
           SDAPLCESMAS+LNIAD+T +N TRNGF KPE  +I + Y  GEN D     +P T S  
Sbjct: 238 SDAPLCESMASILNIADQTRQNSTRNGFQKPEAPKIPVAYENGENDDQSPESAP-TPSFI 296

Query: 293 KDEAGKTTSQEAVVQNCQGF-PPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPF 351
            +E GKT  Q+ V+ NCQGF PPHV  FPG PWPYPWNS QWS PV PP   PPG PMPF
Sbjct: 297 NNEEGKTGPQDQVIHNCQGFLPPHVPFFPGTPWPYPWNSPQWSSPVPPPTFYPPGIPMPF 356

Query: 352 YPPAAYWGCTVPGAWNIPWIPQP--TSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQ 409
           YP A +WGCTVPGAW IPW+ QP   SP   + APNSPTLGKHSR+E++ K S+    EQ
Sbjct: 357 YPTAPFWGCTVPGAWPIPWVSQPPSLSPVPQNHAPNSPTLGKHSRDENVTKQSDFGEDEQ 416

Query: 410 HKENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKN-DGR 468
            K+   E+CLW+PKTLRIDDPG+AAKSSIW TLGIKNDK DS+   GLFKAFQ K  D +
Sbjct: 417 QKDTKTEKCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSE-GLFKAFQSKKIDEK 475

Query: 469 GHIAGTSPVLQANPAALSRSLNFQESS 495
            H    SPVLQ NPAALSRS+ F ESS
Sbjct: 476 NHKTEASPVLQVNPAALSRSIKFHESS 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459536|ref|XP_004147502.1| PREDICTED: dof zinc finger protein DOF5.2-like [Cucumis sativus]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 305/506 (60%), Positives = 355/506 (70%), Gaps = 15/506 (2%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAPSVDDRID--QDPTCSTNSSRESDKSR---DG 55
           M+EPKD  IKLFG+TIPLP+ +P+    PS    +      T   N   +S  S    D 
Sbjct: 1   MSEPKDPAIKLFGKTIPLPDPSPATPHLPSSLPILSPPHHTTPLPNHDHDSSSSTFDVDA 60

Query: 56  EERDSEKEMSVDKPVETKQE--DEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKT 113
           E+ + +K+   +K V  K E  D     ++EE TN  ++   SEN K   +  + +   T
Sbjct: 61  EDLELDKDAVSEKSVGAKLENGDGGLSVSTEEFTNSDTSVVRSENSKV--LSGDESNPST 118

Query: 114 SKTEEEQSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT 173
           +   +EQ+E S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT
Sbjct: 119 TTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT 178

Query: 174 AGGTMRNVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGS 233
           AGGTMRNVPVGAGRRKNK+SASH+R I VSEALQ+ RTDVPNG+HH  LK N  VL FGS
Sbjct: 179 AGGTMRNVPVGAGRRKNKSSASHHRQIIVSEALQHARTDVPNGIHHSTLKPNANVLAFGS 238

Query: 234 DAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSK 293
           DAPLCESMAS+LNIAD+T +N TRNGF KPE  +I + Y  GEN D     +P T S   
Sbjct: 239 DAPLCESMASILNIADQTRQNSTRNGFQKPEAPKIPVAYENGENDDQSPESAP-TPSFIN 297

Query: 294 DEAGKTTSQEAVVQNCQGF-PPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFY 352
           +E GKT  Q+ V+ NCQGF PPHV  FPG PWPYPWNS QWS PV PP   PPG PMPFY
Sbjct: 298 NEEGKTGPQDQVIHNCQGFLPPHVPFFPGTPWPYPWNSPQWSSPVPPPTFYPPGIPMPFY 357

Query: 353 PPAAYWGCTVPGAWNIPWIPQP--TSPKTPSSAPNSPTLGKHSREESLVKASNSEGQEQH 410
           P A +WGCTVPGAW IPW+ QP   SP   + APNSPTLGKHSR+E++ + S+    EQ 
Sbjct: 358 PTAPFWGCTVPGAWPIPWVSQPPSLSPVPQNHAPNSPTLGKHSRDENVTRQSDLGEDEQQ 417

Query: 411 KENNAERCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKN-DGRG 469
           K+   E+CLW+PKTLRIDDPG+AAKSSIW TLGIKNDK DS+   GLFK FQ K  D + 
Sbjct: 418 KDTKTEKCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSE-GLFKVFQSKKIDEKN 476

Query: 470 HIAGTSPVLQANPAALSRSLNFQESS 495
           H    SPVLQ NPAALSRS+ F ESS
Sbjct: 477 HKTEASPVLQVNPAALSRSIKFHESS 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457399|ref|XP_002281994.1| PREDICTED: dof zinc finger protein DOF3.3-like [Vitis vinifera]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 298/499 (59%), Positives = 345/499 (69%), Gaps = 30/499 (6%)

Query: 1   MAEPKDQGIKLFGRTIPLPEVTPSVGAAP-SVDDRIDQDPTCSTNSSRESDKSRDGEERD 59
           M EPKD   KLFG+TIP+     + G AP S  D  D     +    RE     DG E +
Sbjct: 1   MQEPKDPAFKLFGKTIPML----ADGDAPVSSGDVGDSGAAVA----RE-----DGLEEE 47

Query: 60  SEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVEKECTTVKTSKTEEE 119
           +EK+    KP ETK ED      SEES N  + +  +ENPK   + +E  T+KTSK E+ 
Sbjct: 48  TEKDALGGKPAETKGED-----GSEESRNSETVAESNENPKTPSIAEENVTLKTSKAEKG 102

Query: 120 QSEPSTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMR 179
           QS+   SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYN+NQPRHFCK+CQRYWTAGGTMR
Sbjct: 103 QSDSPDSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMR 162

Query: 180 NVPVGAGRRKNKNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAPLCE 239
           NVPVGAGRRKNKNSASHYRHIT+SEALQ VR +  NGVH P LK+NGTVLTFGSDAP C+
Sbjct: 163 NVPVGAGRRKNKNSASHYRHITISEALQTVRIEATNGVHQPTLKSNGTVLTFGSDAPFCD 222

Query: 240 SMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNSKDEAGKT 299
           SM SVLN+ +K M N  RNGFH  EE  I +++R  ENGD+++  S +TVSNS +E  K 
Sbjct: 223 SMTSVLNLEEKKMPNGARNGFHTHEEQGIPVSFRVQENGDDHSSASSITVSNSSEEGSKY 282

Query: 300 TSQEAVVQNCQGFPPHVACFPGAPWPYPWNSAQWSPPVTPPAILPPGFPMPFYPPAAYWG 359
              EA  +N  G P  + C PG PWPYPWNSA     V PP   P      +  PAAYW 
Sbjct: 283 GLHEA-KRNSHGVPSRIPCIPGIPWPYPWNSA-----VPPPFCPPGFPMPFY--PAAYWN 334

Query: 360 CTVPGAWNIPWIPQPTSP---KTPSSAPNSPTLGKHSREESLVKASNSEGQEQHKENNAE 416
           C V   WNIPW+  P+S    KTP+S  NSPTLGKHSRE  ++K S  E +E  K+ ++E
Sbjct: 335 CHVTAPWNIPWLSPPSSSANQKTPNSRQNSPTLGKHSREGDILKPSIVEDEETPKQRSSE 394

Query: 417 RCLWVPKTLRIDDPGDAAKSSIWTTLGIKNDKADSIGRGGLFKAFQQKNDGRGHIAGTSP 476
           RCLWVPKTLRIDDP +AAKSSIWTTLGIKNDK DS+  GGLF AF  K D + H   TS 
Sbjct: 395 RCLWVPKTLRIDDPAEAAKSSIWTTLGIKNDKVDSVSGGGLFNAFHLKGDDKNHAIDTSA 454

Query: 477 VLQANPAALSRSLNFQESS 495
           VL+ANPAALSRSLNFQESS
Sbjct: 455 VLRANPAALSRSLNFQESS 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2079152	448	CDF3 "cycling DOF factor 3" [A	0.513	0.566	0.481	2.6e-65
TAIR|locus:2154079	298	CDF1 "AT5G62430" [Arabidopsis	0.149	0.248	0.828	1.6e-61
TAIR|locus:2164860	457	CDF2 "cycling DOF factor 2" [A	0.644	0.698	0.401	9.2e-52
TAIR|locus:2007151	399	AT1G69570 [Arabidopsis thalian	0.418	0.518	0.416	1.8e-48
TAIR|locus:2030006	175	AT1G29160 [Arabidopsis thalian	0.121	0.342	0.85	1.9e-28
TAIR|locus:2055506	170	AT2G34140 [Arabidopsis thalian	0.121	0.352	0.816	5.7e-27
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.165	0.248	0.530	1.3e-26
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.125	0.176	0.693	2.5e-25
TAIR|locus:2158078	225	AT5G66940 [Arabidopsis thalian	0.337	0.742	0.362	4.3e-25
TAIR|locus:2159275	307	OBP4 "OBF binding protein 4" [	0.113	0.182	0.767	6.3e-25

TAIR|locus:2079152 CDF3 "cycling DOF factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 140/291 (48%), Positives = 168/291 (57%)

Query:   131 LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKN 190
             LKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTMRNVPVGAGRRKN
Sbjct:   103 LKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 162

Query:   191 KNSASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGSDAP---LCESMASVLNI 247
             K+S+SHYRHIT+SEAL+  R D       P L+ N  VL+FG +A    +   M  V+ +
Sbjct:   163 KSSSSHYRHITISEALEAARLD-------PGLQANTRVLSFGLEAQQQHVAAPMTPVMKL 215

Query:   248 A-DKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSN--SKDEAGKTTSQ-- 302
               D+ + N  RN FH   + R  L  R  ENGD+ + GS VT SN  S DE+   +    
Sbjct:   216 QEDQKVSNGARNRFHGLADQR--LVARV-ENGDDCSSGSSVTTSNNHSVDESRAQSGSVV 272

Query:   303 EAVVQNCQGFPPH-VACFPGAPWPYPWNSAQWSPPVTPPAILXXXXXXXXXXXXXXWGCT 361
             EA + N      +  AC PG PWPY WN A   P   PP                 +   
Sbjct:   273 EAQMNNNNNNNMNGYACIPGVPWPYTWNPAMPPPGFYPPP---------------GYPMP 317

Query:   362 VPGAWNIPWIP--QPTSPKTPS-SAPNSPTLGKHSREESLVKASNSEGQEQ 409
                 W IP +P  Q +SP +   S  NSPTLGKH R+E   K  N   ++Q
Sbjct:   318 FYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDNETERKQ 368

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2154079 CDF1 "AT5G62430" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
 Identities = 63/76 (82%), Positives = 71/76 (93%)

Query:   131 LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKN 190
             LKKP KILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWT+GGTMR+VP+GAGRRKN
Sbjct:    47 LKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKN 106

Query:   191 KNSA--SHYRHITVSE 204
             KN++  SHY H+T+SE
Sbjct:   107 KNNSPTSHYHHVTISE 122

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2164860 CDF2 "cycling DOF factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 142/354 (40%), Positives = 183/354 (51%)

Query:     6 DQGIKLFGRTIPLPE--VTPS----VGAAPSVDDRIDQDPTCSTNSSRES--DKSRDGEE 57
             D  IKLFG+TIPLPE  V  S     G        +    +C+ +   E   D     EE
Sbjct:     3 DPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREE 62

Query:    58 RDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVXXXXXXXXXXXXX 117
              D   +   +   ET +++E   E  EES     ++ ++     S +             
Sbjct:    63 GDDVGDGGGES--ETDKKEEKDSECQEESLR-NESNDVTTT--TSGITEKTETTKAAKTN 117

Query:   118 XXXXXXXXXXXXXLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGT 177
                          LKKPDKILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWTAGGT
Sbjct:   118 EESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGT 177

Query:   178 MRNVPVGAGRRKNKNSASHY-RHITVS--EALQNV-RTDVPNGVHHPALKTNGT-VLTFG 232
             MRNVPVGAGRRKNK+ ASHY RH++++  EA+Q V RTD+     HP    NG  +LTFG
Sbjct:   178 MRNVPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTDL----QHP----NGANLLTFG 229

Query:   233 SDAPLCESMASVLNIADKTMRNCTRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTVSNS 292
             SD+ LCESMAS LN+ +K++   T+    +P E  +++T    +  +     SP+     
Sbjct:   230 SDSVLCESMASGLNLVEKSLLK-TQTVLQEPNE-GLKITVPLNQTNEEAGTVSPLPKVPC 287

Query:   293 KDEAGKTT--SQEAVVQNCQGF-PP--HVACFPGAPWPYPWNSAQWSPPVTPPA 341
                   T   +   V      F PP  + +C PG   P  WNS  W P    P+
Sbjct:   288 FPGPPPTWPYAWNGVSWTILPFYPPPAYWSC-PGVS-PGAWNSFTWMPQPNSPS 339

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2007151 AT1G69570 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 100/240 (41%), Positives = 131/240 (54%)

Query:     1 MAEPKDQGIKLFGRTIP-LPEVT---PSVGAAPSVDDRIDQDPTCSTNSSRESDKSRD-G 55
             M++ +D  IKLFGRTI  L +V    PS   +P V D +  DP+   +SS  S  S   G
Sbjct:     1 MSKSRDTEIKLFGRTITSLLDVNCYDPS-SLSP-VHD-VSSDPSKEDSSSSSSSCSPTIG 57

Query:    56 EERDSEKEMSVDKPVETKQEDEAPPENSEESTNPGSTSGISENPKASPVXXXXXXXXXXX 115
               R     + V K  +   + + P   S+ +  P + S IS +P++S             
Sbjct:    58 PIR-----VPVKKSEQESNKFKDPYILSDLNEPPKAVSEIS-SPRSSK--NNCDQQSEIT 109

Query:   116 XXXXXXXXXXXXXXXLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAG 175
                            LKKPDK++PCPRC S +TKFCYYNNYNVNQPR+FC+NCQRYWTAG
Sbjct:   110 TTTTTSTTSGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAG 169

Query:   176 GTMRNVPVGAGRRKNKN--SASHYRHITVSEALQNVRTDVPNGVHHPALKTNGTVLTFGS 233
             G+MRNVPVG+GRRKNK   S++HY  +T SE   N                +GT+L+FGS
Sbjct:   170 GSMRNVPVGSGRRKNKGWPSSNHYLQVT-SEDCDN--------------NNSGTILSFGS 214

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2030006 AT1G29160 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 51/60 (85%), Positives = 57/60 (95%)

Query:   132 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 191
             K+PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct:    56 KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2055506 AT2G34140 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 49/60 (81%), Positives = 55/60 (91%)

Query:   132 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 191
             K+PDKI+ CPRC SM+TKFCY+NNYNVNQPRHFCK C RYWTAGG +RNVPVGAGRRK+K
Sbjct:    52 KRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
 Identities = 44/83 (53%), Positives = 57/83 (68%)

Query:   134 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 193
             P+  L CPRC S +TKFCY+NNY++ QPRHFCK C+RYWT GG +RNVPVG G R+N+ +
Sbjct:    85 PEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRT 144

Query:   194 ASHYRHITVSEALQNVRTDVPNG 216
              S+  +   S A  N  T   +G
Sbjct:   145 KSNSNNNNNSTATSN-NTSFSSG 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 43/62 (69%), Positives = 56/62 (90%)

Query:   135 DKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 194
             D+ L CPRCNS++TKFCYYNNY++ QPR+FCK+C+RYWTAGG++RN+PVG G RKNK S+
Sbjct:    46 DQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSS 105

Query:   195 SH 196
             S+
Sbjct:   106 SN 107

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2158078 AT5G66940 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 63/174 (36%), Positives = 93/174 (53%)

Query:   138 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHY 197
             L CPRC S +TKFCYYNNYN +QPRHFCK+C+RYWT GGT+R++PVG   RK+   +  Y
Sbjct:    32 LSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTY 91

Query:   198 RHITVSEALQNVRTDVP-NGVHHPALKTNGTVLTF-GSDAPLCESMASVLNIADKTMRNC 255
                  +  + +    +    V  P   +NG + T  GS +      +S++N      RN 
Sbjct:    92 SSAATTSVVGSRNFPLQATPVLFPQSSSNGGITTAKGSASSFYGGFSSLINYNAAVSRNG 151

Query:   256 TRNGFHKPEELRIRLTYRGGENGDNYAHGSPVTV---SNSKDEAGKTTSQEAVV 306
                GF+ P+   + L +  G   ++  +G  +TV   S+   +A  TTS  A +
Sbjct:   152 PGGGFNGPDAFGLGLGH--GSYYEDVRYGQGITVWPFSSGATDAATTTSHIAQI 203

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2159275 OBP4 "OBF binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
 Identities = 43/56 (76%), Positives = 49/56 (87%)

Query:   138 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 193
             L CPRCNS++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK K S
Sbjct:    51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZL5	CDF2_ARATH	No assigned EC number	0.4535	0.8585	0.9299	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00041037 hypothetical protein (503 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	7e-40

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  137 bits (348), Expect = 7e-40
 Identities = 51/63 (80%), Positives = 58/63 (92%)

Query: 133 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKN 192
           KPDK L CPRC+SM+TKFCYYNNYN+NQPR+FCKNC+RYWTAGG +RNVPVG GRRKNK 
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 193 SAS 195
           S+S
Sbjct: 61  SSS 63

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	88.58
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	88.57
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	87.99
COG3677	129	Transposase and inactivated derivatives [DNA repli	84.94

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.3e-36  Score=242.44  Aligned_cols=63  Identities=73%  Similarity=1.465  Sum_probs=60.9

Q ss_pred             CCCCccCCCCCCCCCCceeeecccCCCCCcccccccccccccCCcccccccCCCccCCCCCCC
Q 011016          133 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAS  195 (495)
Q Consensus       133 ~p~~~~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~C~RyWT~GG~lRnVPvGgG~RKnk~s~s  195 (495)
                      +|++.++||||+|++|||||||||++.||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            589999999999999999999999999999999999999999999999999999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=88.58  E-value=0.18  Score=46.77  Aligned_cols=34  Identities=26%  Similarity=0.661  Sum_probs=27.6

Q ss_pred             ccCCCCCCCCCCceeeeccc--CCCCCccccccccccc
Q 011016          137 ILPCPRCNSMDTKFCYYNNY--NVNQPRHFCKNCQRYW  172 (495)
Q Consensus       137 ~~~CPRC~S~~TkfcyyNNy--~~~QPR~fCk~C~RyW  172 (495)
                      ...||||.|.+|+.  .+.|  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            58999999999997  5666  4567889999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=88.57  E-value=0.38  Score=36.20  Aligned_cols=32  Identities=34%  Similarity=0.783  Sum_probs=24.5

Q ss_pred             CCCCCccCCCCCCCCCCceeeecccCCCCCccccccccc
Q 011016          132 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR  170 (495)
Q Consensus       132 ~~p~~~~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~C~R  170 (495)
                      .=|+. ..||+|.+.  ++..+.+    +.+|.|++|++
T Consensus        14 RW~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   14 RWPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             cCCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            34555 669999998  6655665    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=87.99  E-value=0.33  Score=35.81  Aligned_cols=30  Identities=33%  Similarity=0.737  Sum_probs=21.5

Q ss_pred             cCCCCCCCCCCceeeecccCCC-CCcccccccc
Q 011016          138 LPCPRCNSMDTKFCYYNNYNVN-QPRHFCKNCQ  169 (495)
Q Consensus       138 ~~CPRC~S~~TkfcyyNNy~~~-QPR~fCk~C~  169 (495)
                      +.||||.+.+.-  |=|-.+.. ..||+|++|+
T Consensus         6 v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            689999998721  23444433 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=84.94  E-value=0.62  Score=42.43  Aligned_cols=35  Identities=29%  Similarity=0.634  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCCceeeecccCCCCCccccccccccccc
Q 011016          138 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA  174 (495)
Q Consensus       138 ~~CPRC~S~~TkfcyyNNy~~~QPR~fCk~C~RyWT~  174 (495)
                      ..||+|.+.+  +-=++-+.....||.|++|++=|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            4899999999  2235555566999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 81/239 (33%)

Query: 95  ISENPKASPVEKECTTVKTSKTEEEQSEP-----STSQEKTLK-------KPD------K 136
           + + PK+   ++E   +  SK     +        + QE+ ++       + +       
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 137 ILPCPRCNSMDTK-FCYYNN--YNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 193
           I    R  SM T+ +    +  YN NQ   F K             NV     R +    
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAK------------YNVS----RLQ---- 135

Query: 194 ASHYRHITVSEALQNVRTDVPN-GVHHPALKTNG------TVLTFGSDAPLCESMASVLN 246
                ++ + +AL  +R    N  +        G      T +       +C S      
Sbjct: 136 ----PYLKLRQALLELR-PAKNVLID-------GVLGSGKTWVA----LDVCLSYKVQCK 179

Query: 247 IADK----TMRNCTRNGFHKPEELRI---RLTYRGGENGDNYAHGS---PVTVSNSKDE 295
           +  K     ++NC     + PE +     +L Y+   N  + +  S    + + + + E
Sbjct: 180 MDFKIFWLNLKNC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	88.45
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	82.03

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.45  E-value=0.31  Score=37.76  Aligned_cols=51  Identities=20%  Similarity=0.466  Sum_probs=36.9

Q ss_pred             cccccccCCCCCccCCCCCCCCCCceeeecccCCCCCc---ccccccccccccCCc
Q 011016          125 TSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPR---HFCKNCQRYWTAGGT  177 (495)
Q Consensus       125 ~s~~~~l~~p~~~~~CPRC~S~~TkfcyyNNy~~~QPR---~fCk~C~RyWT~GG~  177 (495)
                      .+++.+|++-  ...||+|...+.-|-+.+-....-|-   |.|.+|.-.|+.-++
T Consensus        13 ~~~DPtlp~t--~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          13 IGSDPTLPRS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             GGGCTTSCCC--CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             cccCCCCCcc--CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            4556677654  46999999887777665555444333   899999999998654

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.45  Score=34.62  Aligned_cols=39  Identities=15%  Similarity=0.659  Sum_probs=30.5

Q ss_pred             CCCccCCCCCCCCCCceeeecccCCCCCc---cccccccccc
Q 011016          134 PDKILPCPRCNSMDTKFCYYNNYNVNQPR---HFCKNCQRYW  172 (495)
Q Consensus       134 p~~~~~CPRC~S~~TkfcyyNNy~~~QPR---~fCk~C~RyW  172 (495)
                      +-..+.||+|.+.+..|--++..+...|-   +.|.+|..-|
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            34557999999988877666666666665   8999999888