Query 011017
Match_columns 495
No_of_seqs 301 out of 1368
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02869 fatty aldehyde decarb 100.0 1E-159 2E-164 1274.1 39.7 476 1-493 1-476 (620)
2 KOG0873 C-4 sterol methyl oxid 100.0 4E-34 8.7E-39 283.9 14.3 215 50-277 35-260 (283)
3 COG3000 ERG3 Sterol desaturase 100.0 3.8E-28 8.2E-33 243.4 15.3 155 127-290 94-250 (271)
4 KOG0872 Sterol C5 desaturase [ 99.9 6.1E-23 1.3E-27 202.2 11.4 144 128-285 128-271 (312)
5 KOG0874 Sphingolipid hydroxyla 99.8 2.6E-21 5.7E-26 185.6 2.3 147 128-284 122-273 (287)
6 PF04116 FA_hydroxylase: Fatty 99.7 9.8E-18 2.1E-22 144.5 7.5 111 134-254 3-114 (114)
7 PLN02434 fatty acid hydroxylas 99.0 8.8E-09 1.9E-13 102.1 14.7 134 128-277 83-230 (237)
8 PRK14982 acyl-ACP reductase; P 98.2 1.1E-05 2.3E-10 84.4 10.7 162 302-493 2-185 (340)
9 KOG0539 Sphingolipid fatty aci 97.7 8.7E-05 1.9E-09 72.2 7.7 135 131-278 86-234 (240)
10 PLN02601 beta-carotene hydroxy 97.4 0.0014 3E-08 66.2 11.4 132 118-265 126-272 (303)
11 PRK07424 bifunctional sterol d 97.0 0.0021 4.5E-08 68.9 8.3 134 139-276 19-175 (406)
12 PF10520 Kua-UEV1_localn: Kua- 94.0 0.12 2.5E-06 49.8 6.1 53 217-274 101-156 (178)
13 PLN03209 translocon at the inn 91.1 0.33 7.1E-06 54.5 5.5 59 434-494 40-109 (576)
14 COG5322 Predicted dehydrogenas 88.7 0.98 2.1E-05 46.5 6.2 97 390-491 87-193 (351)
15 KOG1208 Dehydrogenases with di 86.5 0.63 1.4E-05 48.4 3.5 44 450-495 22-65 (314)
16 KOG1014 17 beta-hydroxysteroid 84.2 0.9 1.9E-05 47.3 3.3 29 464-494 50-78 (312)
17 PRK07985 oxidoreductase; Provi 83.7 1.2 2.6E-05 44.9 3.9 29 464-494 50-78 (294)
18 PLN02780 ketoreductase/ oxidor 82.6 1.4 3.1E-05 45.3 4.1 29 464-494 54-82 (320)
19 COG1484 DnaC DNA replication p 82.5 2 4.2E-05 43.3 4.9 71 423-494 62-138 (254)
20 PRK05866 short chain dehydroge 82.2 1.6 3.4E-05 44.1 4.1 29 464-494 41-69 (293)
21 PRK06128 oxidoreductase; Provi 81.9 1.5 3.3E-05 44.1 3.9 29 464-494 56-84 (300)
22 PRK05579 bifunctional phosphop 79.9 2 4.3E-05 46.3 4.1 95 375-494 118-233 (399)
23 PRK07424 bifunctional sterol d 79.8 2 4.3E-05 46.3 4.1 30 463-494 178-207 (406)
24 PLN02686 cinnamoyl-CoA reducta 77.1 3.2 6.9E-05 43.5 4.6 32 461-494 51-82 (367)
25 PLN02657 3,8-divinyl protochlo 76.8 3.4 7.3E-05 43.9 4.7 37 456-494 53-89 (390)
26 PRK13656 trans-2-enoyl-CoA red 74.9 4.5 9.8E-05 43.6 5.1 41 451-494 20-71 (398)
27 PLN02166 dTDP-glucose 4,6-dehy 74.2 3.9 8.5E-05 44.2 4.5 28 465-494 122-149 (436)
28 cd00431 cysteine_hydrolases Cy 72.6 33 0.00072 31.0 9.6 99 392-494 22-140 (161)
29 PRK07340 ornithine cyclodeamin 72.4 13 0.00028 38.4 7.6 81 408-491 61-151 (304)
30 cd03514 CrtR_beta-carotene-hyd 71.9 34 0.00075 33.3 10.0 22 239-260 167-188 (207)
31 PRK06701 short chain dehydroge 70.9 5 0.00011 40.4 4.1 29 464-494 47-75 (290)
32 PLN02572 UDP-sulfoquinovose sy 70.8 4.6 9.9E-05 43.7 4.0 29 464-494 48-76 (442)
33 PTZ00381 aldehyde dehydrogenas 70.3 7.5 0.00016 42.8 5.6 48 441-494 167-214 (493)
34 PRK09496 trkA potassium transp 68.3 10 0.00023 40.3 6.1 93 386-494 157-259 (453)
35 PRK06484 short chain dehydroge 68.1 6.3 0.00014 42.7 4.4 31 462-494 268-298 (520)
36 PF00857 Isochorismatase: Isoc 66.6 33 0.00071 31.4 8.3 100 389-494 19-142 (174)
37 cd01080 NAD_bind_m-THF_DH_Cycl 66.5 9.5 0.00021 36.2 4.7 42 450-494 29-73 (168)
38 TIGR00521 coaBC_dfp phosphopan 66.2 6.6 0.00014 42.2 4.0 33 462-494 184-230 (390)
39 PLN02206 UDP-glucuronate decar 66.2 7.3 0.00016 42.3 4.4 29 464-494 120-148 (442)
40 PRK07201 short chain dehydroge 66.1 6.4 0.00014 43.9 4.1 30 463-494 371-400 (657)
41 PLN02174 aldehyde dehydrogenas 66.0 10 0.00023 41.8 5.6 48 441-494 170-217 (484)
42 PRK11440 putative hydrolase; P 65.4 50 0.0011 31.2 9.5 33 461-494 119-151 (188)
43 PRK08261 fabG 3-ketoacyl-(acyl 64.5 21 0.00046 38.1 7.5 99 391-494 137-239 (450)
44 KOG1201 Hydroxysteroid 17-beta 64.4 7.6 0.00016 40.4 3.9 28 465-494 40-67 (300)
45 TIGR02632 RhaD_aldol-ADH rhamn 64.2 7.2 0.00016 44.6 4.1 106 368-494 333-443 (676)
46 PRK00258 aroE shikimate 5-dehy 63.5 9.9 0.00021 38.5 4.5 46 446-494 105-152 (278)
47 PRK12548 shikimate 5-dehydroge 63.2 8.9 0.00019 39.2 4.1 30 462-494 125-155 (289)
48 cd07099 ALDH_DDALDH Methylomon 62.7 14 0.0003 39.8 5.7 47 442-494 179-225 (453)
49 PLN02203 aldehyde dehydrogenas 62.0 13 0.00029 40.9 5.5 48 441-494 166-213 (484)
50 PRK06141 ornithine cyclodeamin 61.6 30 0.00065 35.8 7.7 85 407-494 60-155 (314)
51 PF01661 Macro: Macro domain; 60.1 38 0.00082 28.8 7.0 63 359-422 43-105 (118)
52 cd07108 ALDH_MGR_2402 Magnetos 59.7 18 0.00039 39.1 6.0 52 439-494 173-224 (457)
53 KOG1600 Fatty acid desaturase 59.3 27 0.00058 36.7 6.8 22 89-110 34-55 (321)
54 PLN00016 RNA-binding protein; 59.0 9.7 0.00021 39.8 3.6 32 461-494 50-85 (378)
55 cd03510 Rhizobitoxine-FADS-lik 58.9 34 0.00073 32.5 7.0 15 154-168 71-85 (175)
56 cd07132 ALDH_F3AB Aldehyde deh 57.3 18 0.0004 39.1 5.5 47 442-494 159-205 (443)
57 PRK08939 primosomal protein Dn 56.9 14 0.00029 38.4 4.2 33 462-494 155-189 (306)
58 PF01695 IstB_IS21: IstB-like 56.8 14 0.00031 35.0 4.1 32 463-494 47-80 (178)
59 cd01012 YcaC_related YcaC rela 56.1 38 0.00083 31.1 6.7 92 393-494 19-118 (157)
60 TIGR02853 spore_dpaA dipicolin 56.0 52 0.0011 33.7 8.3 77 395-494 101-179 (287)
61 TIGR00507 aroE shikimate 5-deh 55.9 15 0.00033 36.8 4.4 46 446-494 100-145 (270)
62 PRK08618 ornithine cyclodeamin 55.5 39 0.00085 35.0 7.4 82 407-491 62-153 (325)
63 PRK12377 putative replication 55.2 16 0.00034 36.9 4.2 40 455-494 93-134 (248)
64 cd07142 ALDH_F2BC Arabidosis a 55.0 24 0.00053 38.4 6.0 52 439-494 198-250 (476)
65 PRK08181 transposase; Validate 54.9 9.5 0.00021 38.9 2.7 49 446-494 89-139 (269)
66 PRK07952 DNA replication prote 54.8 22 0.00047 35.8 5.2 40 455-494 91-132 (244)
67 PRK05855 short chain dehydroge 53.9 16 0.00036 39.4 4.5 30 463-494 315-344 (582)
68 PLN02766 coniferyl-aldehyde de 53.7 24 0.00053 38.9 5.8 52 439-494 215-267 (501)
69 cd07145 ALDH_LactADH_F420-Bios 53.3 24 0.00052 38.1 5.6 50 441-494 182-231 (456)
70 cd07136 ALDH_YwdH-P39616 Bacil 53.0 23 0.0005 38.6 5.5 50 439-494 156-205 (449)
71 PRK08727 hypothetical protein; 52.7 21 0.00045 35.2 4.6 31 464-494 42-74 (233)
72 KOG3011 Ubiquitin-conjugating 52.4 15 0.00033 37.4 3.5 134 128-271 109-260 (293)
73 cd07116 ALDH_ACDHII-AcoD Ralst 51.2 29 0.00063 37.9 5.9 52 439-494 192-243 (479)
74 cd07110 ALDH_F10_BADH Arabidop 49.5 33 0.00071 37.1 5.9 53 437-494 176-228 (456)
75 cd07119 ALDH_BADH-GbsA Bacillu 49.3 32 0.0007 37.5 5.9 53 437-494 190-242 (482)
76 cd06215 FNR_iron_sulfur_bindin 49.2 29 0.00063 33.2 4.9 52 435-491 158-222 (231)
77 cd07101 ALDH_SSADH2_GabD2 Myco 48.6 31 0.00068 37.3 5.6 50 437-494 174-224 (454)
78 PLN02434 fatty acid hydroxylas 48.6 33 0.00072 34.6 5.3 41 127-167 165-208 (237)
79 PRK08324 short chain dehydroge 48.2 19 0.00042 41.1 4.1 29 464-494 423-451 (681)
80 PRK11199 tyrA bifunctional cho 47.7 22 0.00048 37.7 4.2 37 456-494 91-127 (374)
81 TIGR01804 BADH glycine betaine 47.7 35 0.00075 37.1 5.8 52 439-494 190-241 (467)
82 PLN02467 betaine aldehyde dehy 47.3 35 0.00076 37.7 5.8 53 437-494 207-259 (503)
83 PRK06046 alanine dehydrogenase 47.3 68 0.0015 33.3 7.6 83 407-493 64-157 (326)
84 cd07097 ALDH_KGSADH-YcbD Bacil 46.8 36 0.00078 37.1 5.7 49 441-494 194-243 (473)
85 cd07086 ALDH_F7_AASADH-like NA 46.7 35 0.00076 37.2 5.6 49 441-494 196-244 (478)
86 PRK11241 gabD succinate-semial 46.7 39 0.00085 37.1 6.0 52 437-494 202-254 (482)
87 cd07559 ALDH_ACDHII_AcoD-like 46.5 38 0.00081 37.1 5.8 53 437-494 191-243 (480)
88 PRK06526 transposase; Provisio 46.1 18 0.0004 36.4 3.1 32 463-494 98-131 (254)
89 cd07131 ALDH_AldH-CAJ73105 Unc 45.9 39 0.00085 36.7 5.8 52 439-494 192-243 (478)
90 cd07134 ALDH_AlkH-like Pseudom 45.8 38 0.00082 36.6 5.7 47 442-494 159-205 (433)
91 cd03512 Alkane-hydroxylase Alk 45.6 2.7E+02 0.0058 29.1 11.7 48 215-262 220-279 (314)
92 PRK14192 bifunctional 5,10-met 45.4 38 0.00083 34.8 5.4 35 458-494 154-188 (283)
93 cd07093 ALDH_F8_HMSADH Human a 45.2 38 0.00082 36.5 5.6 52 439-494 174-225 (455)
94 PRK06835 DNA replication prote 44.3 27 0.00059 36.6 4.2 34 461-494 181-216 (329)
95 PRK08125 bifunctional UDP-gluc 44.1 24 0.00051 40.2 3.9 38 455-494 303-345 (660)
96 PRK13252 betaine aldehyde dehy 43.5 43 0.00093 36.6 5.7 49 441-494 201-249 (488)
97 PRK13982 bifunctional SbtC-lik 43.4 21 0.00046 39.5 3.3 22 473-494 280-301 (475)
98 PLN02260 probable rhamnose bio 43.2 25 0.00054 39.8 3.9 28 464-493 381-408 (668)
99 cd07115 ALDH_HMSADH_HapE Pseud 43.1 47 0.001 35.9 5.9 50 441-494 176-225 (453)
100 cd07130 ALDH_F7_AASADH NAD+-de 42.8 43 0.00092 36.6 5.5 48 442-494 196-243 (474)
101 cd03505 Delta9-FADS-like The D 42.7 69 0.0015 30.9 6.3 25 237-261 127-152 (178)
102 cd07103 ALDH_F5_SSADH_GabD Mit 42.5 48 0.001 35.6 5.8 51 440-494 175-225 (451)
103 cd08345 Fosfomycin_RP Fosfomyc 42.3 49 0.0011 27.3 4.7 47 397-448 66-112 (113)
104 PLN02466 aldehyde dehydrogenas 42.2 45 0.00098 37.3 5.7 53 437-494 251-304 (538)
105 cd07113 ALDH_PADH_NahF Escheri 42.2 45 0.00097 36.4 5.6 51 439-494 199-249 (477)
106 cd07088 ALDH_LactADH-AldA Esch 42.0 48 0.001 35.9 5.7 52 439-494 190-241 (468)
107 PRK12549 shikimate 5-dehydroge 41.9 35 0.00076 34.9 4.4 29 463-494 127-156 (284)
108 PLN02419 methylmalonate-semial 41.7 46 0.00099 38.0 5.7 52 437-494 305-356 (604)
109 cd07144 ALDH_ALD2-YMR170C Sacc 41.5 52 0.0011 36.0 5.9 52 439-494 201-252 (484)
110 PRK14175 bifunctional 5,10-met 41.5 35 0.00076 35.3 4.4 43 450-494 140-187 (286)
111 cd01015 CSHase N-carbamoylsarc 41.4 2.1E+02 0.0044 26.8 9.3 33 461-494 112-144 (179)
112 cd07138 ALDH_CddD_SSP0762 Rhod 41.2 53 0.0011 35.6 6.0 30 462-494 209-238 (466)
113 cd07102 ALDH_EDX86601 Uncharac 41.0 53 0.0012 35.3 5.9 51 439-494 173-223 (452)
114 PF13580 SIS_2: SIS domain; PD 40.7 23 0.00051 31.9 2.7 25 392-416 112-136 (138)
115 PRK13473 gamma-aminobutyraldeh 40.6 53 0.0011 35.8 5.8 49 442-494 197-245 (475)
116 PF03853 YjeF_N: YjeF-related 40.6 34 0.00073 32.2 3.8 35 460-494 23-57 (169)
117 cd07091 ALDH_F1-2_Ald2-like AL 40.5 54 0.0012 35.7 5.9 50 441-494 200-250 (476)
118 PRK00676 hemA glutamyl-tRNA re 40.4 38 0.00082 35.9 4.5 87 393-494 108-203 (338)
119 cd07087 ALDH_F3-13-14_CALDH-li 40.2 55 0.0012 35.2 5.8 47 442-494 159-205 (426)
120 PRK11563 bifunctional aldehyde 40.1 45 0.00098 38.3 5.4 46 442-494 209-256 (675)
121 KOG1203 Predicted dehydrogenas 40.1 26 0.00057 38.1 3.3 52 440-493 55-107 (411)
122 cd07133 ALDH_CALDH_CalB Conife 40.0 56 0.0012 35.3 5.9 48 441-494 159-206 (434)
123 cd07090 ALDH_F9_TMBADH NAD+-de 39.8 50 0.0011 35.7 5.5 48 442-494 176-223 (457)
124 cd07151 ALDH_HBenzADH NADP+-de 39.7 55 0.0012 35.6 5.8 49 441-494 190-239 (465)
125 cd07106 ALDH_AldA-AAD23400 Str 39.7 55 0.0012 35.3 5.7 49 441-494 172-220 (446)
126 cd07118 ALDH_SNDH Gluconobacte 39.7 55 0.0012 35.5 5.7 50 441-494 178-227 (454)
127 COG0010 SpeB Arginase/agmatina 39.1 1E+02 0.0023 31.8 7.4 101 390-493 82-197 (305)
128 cd07109 ALDH_AAS00426 Uncharac 39.0 58 0.0012 35.2 5.8 48 442-494 177-225 (454)
129 TIGR03216 OH_muco_semi_DH 2-hy 38.8 59 0.0013 35.5 5.9 31 461-494 218-248 (481)
130 cd07085 ALDH_F6_MMSDH Methylma 38.8 53 0.0011 35.8 5.5 48 442-494 196-243 (478)
131 cd07117 ALDH_StaphAldA1 Unchar 38.2 64 0.0014 35.3 6.0 48 442-494 195-243 (475)
132 cd07107 ALDH_PhdK-like Nocardi 38.2 62 0.0013 35.0 5.9 51 439-494 172-223 (456)
133 cd01014 nicotinamidase_related 38.0 1.7E+02 0.0036 26.7 7.9 33 461-494 97-129 (155)
134 PRK05642 DNA replication initi 37.9 46 0.001 32.8 4.5 31 464-494 46-78 (234)
135 TIGR02278 PaaN-DH phenylacetic 37.8 62 0.0013 37.2 6.0 49 439-494 202-252 (663)
136 PRK06893 DNA replication initi 37.8 43 0.00094 32.8 4.2 31 464-494 40-72 (229)
137 COG1335 PncA Amidases related 37.6 2.7E+02 0.006 26.2 9.6 38 454-494 126-163 (205)
138 cd07114 ALDH_DhaS Uncharacteri 37.4 71 0.0015 34.5 6.2 52 439-494 176-227 (457)
139 TIGR03374 ABALDH 1-pyrroline d 37.4 61 0.0013 35.5 5.7 31 461-494 214-244 (472)
140 cd05191 NAD_bind_amino_acid_DH 37.4 83 0.0018 25.9 5.3 31 461-494 21-52 (86)
141 PF02423 OCD_Mu_crystall: Orni 37.1 53 0.0011 34.0 4.9 78 407-487 63-149 (313)
142 PRK08903 DnaA regulatory inact 36.8 48 0.001 31.9 4.4 44 451-494 27-75 (227)
143 PRK06921 hypothetical protein; 36.5 48 0.001 33.6 4.4 33 462-494 116-151 (266)
144 cd06209 BenDO_FAD_NAD Benzoate 36.5 66 0.0014 30.9 5.2 30 459-491 189-218 (228)
145 PLN02520 bifunctional 3-dehydr 36.4 39 0.00085 37.7 4.1 29 463-494 379-407 (529)
146 TIGR01809 Shik-DH-AROM shikima 36.1 53 0.0011 33.4 4.7 46 446-494 106-154 (282)
147 PRK09183 transposase/IS protei 35.9 47 0.001 33.4 4.2 31 464-494 103-135 (259)
148 cd07104 ALDH_BenzADH-like ALDH 35.8 78 0.0017 33.8 6.1 52 439-494 156-207 (431)
149 cd07120 ALDH_PsfA-ACA09737 Pse 35.8 75 0.0016 34.6 6.0 31 461-494 196-226 (455)
150 cd07129 ALDH_KGSADH Alpha-Keto 35.6 63 0.0014 35.1 5.4 51 439-494 168-221 (454)
151 PRK08116 hypothetical protein; 35.2 45 0.00097 33.8 4.0 30 465-494 116-147 (268)
152 TIGR01238 D1pyr5carbox3 delta- 35.2 76 0.0016 35.1 6.0 53 437-494 216-271 (500)
153 PRK08084 DNA replication initi 35.2 64 0.0014 31.8 5.0 52 443-494 24-78 (235)
154 cd07112 ALDH_GABALDH-PuuC Esch 35.1 81 0.0018 34.3 6.2 52 439-494 181-233 (462)
155 TIGR01780 SSADH succinate-semi 35.1 66 0.0014 34.8 5.5 51 439-494 174-226 (448)
156 TIGR01275 ACC_deam_rel pyridox 35.1 43 0.00094 34.2 3.9 40 454-494 47-86 (311)
157 cd08241 QOR1 Quinone oxidoredu 35.0 1.1E+02 0.0025 29.6 6.7 30 463-494 140-169 (323)
158 cd07083 ALDH_P5CDH ALDH subfam 34.8 67 0.0015 35.4 5.5 49 441-494 213-268 (500)
159 cd07105 ALDH_SaliADH Salicylal 34.6 71 0.0015 34.3 5.6 53 439-494 155-209 (432)
160 PRK00124 hypothetical protein; 34.5 2.6E+02 0.0056 26.5 8.6 78 398-493 12-90 (151)
161 PRK03692 putative UDP-N-acetyl 34.4 77 0.0017 32.0 5.4 50 441-493 84-134 (243)
162 cd07089 ALDH_CddD-AldA-like Rh 34.3 76 0.0017 34.4 5.8 52 439-494 180-231 (459)
163 TIGR00762 DegV EDD domain prot 34.2 33 0.00071 34.7 2.8 57 397-454 65-121 (275)
164 cd07137 ALDH_F3FHI Plant aldeh 34.0 82 0.0018 34.1 6.0 49 440-494 158-206 (432)
165 cd07124 ALDH_PutA-P5CDH-RocA D 34.0 82 0.0018 34.8 6.1 52 439-494 223-280 (512)
166 TIGR00197 yjeF_nterm yjeF N-te 33.8 75 0.0016 30.9 5.1 38 457-494 40-77 (205)
167 PRK01045 ispH 4-hydroxy-3-meth 33.4 90 0.0019 32.6 5.9 78 394-492 14-91 (298)
168 TIGR01237 D1pyr5carbox2 delta- 33.3 73 0.0016 35.2 5.5 51 439-494 224-281 (511)
169 cd05188 MDR Medium chain reduc 33.3 1.7E+02 0.0038 27.6 7.5 30 462-494 134-163 (271)
170 cd05286 QOR2 Quinone oxidoredu 33.2 1.3E+02 0.0029 29.0 6.8 34 458-494 133-166 (320)
171 PLN00093 geranylgeranyl diphos 33.1 45 0.00098 36.3 3.8 36 456-494 32-67 (450)
172 cd06183 cyt_b5_reduct_like Cyt 33.1 77 0.0017 30.2 5.1 28 461-491 199-227 (234)
173 cd00763 Bacterial_PFK Phosphof 32.9 1.6E+02 0.0034 30.9 7.6 91 392-493 12-119 (317)
174 cd06184 flavohem_like_fad_nad_ 32.9 80 0.0017 30.7 5.2 39 450-491 196-234 (247)
175 PRK03910 D-cysteine desulfhydr 32.9 37 0.0008 35.2 3.0 36 458-494 59-94 (331)
176 cd08253 zeta_crystallin Zeta-c 32.5 1.6E+02 0.0034 28.7 7.2 34 458-494 141-174 (325)
177 cd07111 ALDH_F16 Aldehyde dehy 32.0 79 0.0017 34.7 5.5 48 442-494 207-254 (480)
178 PRK06199 ornithine cyclodeamin 31.9 1.2E+02 0.0025 32.6 6.6 78 407-487 90-176 (379)
179 cd07128 ALDH_MaoC-N N-terminal 31.6 88 0.0019 34.8 5.8 46 442-494 205-252 (513)
180 PF10991 DUF2815: Protein of u 31.5 80 0.0017 30.6 4.8 70 379-449 27-111 (181)
181 PLN03050 pyridoxine (pyridoxam 31.4 78 0.0017 31.9 4.9 31 464-494 62-92 (246)
182 PRK12390 1-aminocyclopropane-1 31.2 57 0.0012 33.9 4.1 39 455-494 59-97 (337)
183 PRK14188 bifunctional 5,10-met 31.0 81 0.0018 32.8 5.1 43 450-494 140-187 (296)
184 PRK10090 aldehyde dehydrogenas 30.9 99 0.0021 33.3 5.9 49 441-494 130-179 (409)
185 TIGR02992 ectoine_eutC ectoine 30.9 1.4E+02 0.003 31.0 6.9 82 407-491 63-155 (326)
186 cd01076 NAD_bind_1_Glu_DH NAD( 30.9 59 0.0013 32.2 3.9 28 463-493 31-58 (227)
187 cd01714 ETF_beta The electron 30.8 57 0.0012 31.6 3.7 88 396-488 38-133 (202)
188 TIGR03240 arg_catab_astD succi 30.5 92 0.002 34.1 5.7 50 439-493 189-239 (484)
189 cd07152 ALDH_BenzADH NAD-depen 30.2 1E+02 0.0022 33.2 5.9 31 461-494 188-218 (443)
190 cd05014 SIS_Kpsf KpsF-like pro 30.2 56 0.0012 28.3 3.3 40 390-430 54-93 (128)
191 TIGR01230 agmatinase agmatinas 30.0 1.3E+02 0.0029 30.4 6.4 95 391-492 74-179 (275)
192 cd07100 ALDH_SSADH1_GabD1 Myco 30.0 1E+02 0.0022 33.1 5.9 31 461-494 173-203 (429)
193 cd06446 Trp-synth_B Tryptophan 29.7 53 0.0012 34.7 3.6 33 459-494 78-111 (365)
194 cd03506 Delta6-FADS-like The D 29.6 2.1E+02 0.0046 27.3 7.5 15 154-168 49-63 (204)
195 cd07098 ALDH_F15-22 Aldehyde d 29.5 1.1E+02 0.0023 33.3 5.9 48 442-494 184-231 (465)
196 PRK08306 dipicolinate synthase 29.5 81 0.0018 32.4 4.8 29 463-494 152-180 (296)
197 cd04241 AAK_FomA-like AAK_FomA 29.5 1.1E+02 0.0024 30.2 5.7 24 468-494 207-230 (252)
198 PRK14027 quinate/shikimate deh 29.5 1E+02 0.0022 31.6 5.5 26 463-491 127-152 (283)
199 PRK13289 bifunctional nitric o 29.4 92 0.002 32.8 5.3 39 450-491 345-383 (399)
200 PRK10669 putative cation:proto 29.3 57 0.0012 36.3 3.9 32 460-494 413-445 (558)
201 cd05561 Peptidases_S8_4 Peptid 29.2 83 0.0018 30.9 4.7 59 396-455 106-198 (239)
202 TIGR02299 HpaE 5-carboxymethyl 29.1 1E+02 0.0022 33.7 5.8 49 442-494 195-243 (488)
203 PRK13968 putative succinate se 29.1 1.1E+02 0.0023 33.5 5.9 30 462-494 204-233 (462)
204 TIGR00075 hypD hydrogenase exp 29.0 37 0.0008 36.4 2.2 69 375-446 43-122 (369)
205 cd05276 p53_inducible_oxidored 28.8 1.4E+02 0.0031 28.8 6.2 30 463-494 140-169 (323)
206 cd07150 ALDH_VaniDH_like Pseud 28.8 1E+02 0.0022 33.2 5.6 31 461-494 197-227 (451)
207 cd07238 Glo_EDI_BRP_like_5 Thi 28.8 1E+02 0.0023 25.5 4.6 42 399-445 68-109 (112)
208 PRK08291 ectoine utilization p 28.6 1.7E+02 0.0038 30.3 7.1 81 407-491 66-158 (330)
209 PRK06823 ornithine cyclodeamin 28.4 1.7E+02 0.0036 30.5 6.9 77 407-487 62-149 (315)
210 PLN02884 6-phosphofructokinase 28.3 1.6E+02 0.0036 32.0 7.0 90 392-493 65-176 (411)
211 KOG2949 Ketopantoate hydroxyme 28.2 82 0.0018 32.0 4.3 38 451-493 121-158 (306)
212 cd07139 ALDH_AldA-Rv0768 Mycob 28.1 1.2E+02 0.0026 32.9 6.1 52 437-494 193-244 (471)
213 PRK09407 gabD2 succinic semial 27.8 99 0.0022 34.3 5.4 47 441-494 213-260 (524)
214 cd05195 enoyl_red enoyl reduct 27.8 2.1E+02 0.0045 27.1 7.0 29 464-494 110-138 (293)
215 PRK09310 aroDE bifunctional 3- 27.8 75 0.0016 35.0 4.4 46 446-494 315-360 (477)
216 PRK09929 hypothetical protein; 27.7 70 0.0015 27.8 3.3 37 399-435 54-91 (91)
217 cd06449 ACCD Aminocyclopropane 27.5 63 0.0014 33.0 3.6 34 460-494 49-82 (307)
218 cd07092 ALDH_ABALDH-YdcW Esche 27.2 1.2E+02 0.0026 32.6 5.9 30 462-494 196-225 (450)
219 PRK10565 putative carbohydrate 27.2 96 0.0021 34.6 5.1 40 455-494 53-92 (508)
220 TIGR02530 flg_new flagellar op 27.0 48 0.001 29.1 2.2 45 397-450 38-82 (96)
221 COG3623 SgaU Putative L-xylulo 26.8 77 0.0017 32.4 3.9 58 381-448 80-137 (287)
222 cd04795 SIS SIS domain. SIS (S 26.7 65 0.0014 25.6 2.8 22 396-417 60-81 (87)
223 cd06216 FNR_iron_sulfur_bindin 26.7 1.1E+02 0.0025 29.6 5.1 53 435-491 177-235 (243)
224 cd06210 MMO_FAD_NAD_binding Me 26.7 1.2E+02 0.0026 29.2 5.2 35 453-490 189-225 (236)
225 PRK11903 aldehyde dehydrogenas 26.6 1.1E+02 0.0024 34.1 5.6 46 442-494 209-256 (521)
226 cd05212 NAD_bind_m-THF_DH_Cycl 26.4 1.5E+02 0.0032 27.4 5.4 35 458-494 23-57 (140)
227 PRK14194 bifunctional 5,10-met 26.1 85 0.0018 32.8 4.2 43 450-494 141-188 (301)
228 PLN03049 pyridoxine (pyridoxam 26.0 1E+02 0.0022 34.1 5.0 42 453-494 48-91 (462)
229 cd07095 ALDH_SGSD_AstD N-succi 25.9 1E+02 0.0022 33.3 5.0 29 462-493 175-204 (431)
230 PF07894 DUF1669: Protein of u 25.8 74 0.0016 33.1 3.7 61 389-452 133-218 (284)
231 cd06534 ALDH-SF NAD(P)+-depend 25.7 1.6E+02 0.0034 30.6 6.2 51 437-494 148-200 (367)
232 PF11017 DUF2855: Protein of u 25.7 74 0.0016 33.5 3.7 31 461-493 134-166 (314)
233 PF08285 DPM3: Dolichol-phosph 25.5 56 0.0012 28.2 2.4 25 389-413 67-91 (91)
234 PRK03562 glutathione-regulated 25.4 70 0.0015 36.4 3.8 34 458-494 395-428 (621)
235 PF01012 ETF: Electron transfe 25.4 80 0.0017 29.0 3.6 84 397-488 19-112 (164)
236 PF14488 DUF4434: Domain of un 25.1 61 0.0013 30.7 2.8 25 393-417 61-86 (166)
237 TIGR02371 ala_DH_arch alanine 25.0 2.1E+02 0.0045 29.8 6.9 77 407-487 63-149 (325)
238 PRK09847 gamma-glutamyl-gamma- 24.9 1.5E+02 0.0034 32.6 6.2 50 441-494 216-266 (494)
239 cd01715 ETF_alpha The electron 24.9 96 0.0021 28.8 4.0 90 391-488 9-105 (168)
240 cd07078 ALDH NAD(P)+ dependent 24.8 1.4E+02 0.0031 31.6 5.8 49 441-494 155-204 (432)
241 cd07143 ALDH_AldA_AN0554 Asper 24.8 1.5E+02 0.0032 32.5 6.1 54 436-494 199-253 (481)
242 cd07135 ALDH_F14-YMR110C Sacch 24.8 1.5E+02 0.0032 32.1 6.0 49 439-494 164-213 (436)
243 TIGR00260 thrC threonine synth 24.6 55 0.0012 33.6 2.6 29 464-494 71-99 (328)
244 COG0169 AroE Shikimate 5-dehyd 24.5 1.1E+02 0.0023 31.7 4.6 46 446-494 107-155 (283)
245 TIGR01722 MMSDH methylmalonic 24.4 1.5E+02 0.0033 32.3 6.0 49 441-494 195-243 (477)
246 COG0373 HemA Glutamyl-tRNA red 24.4 78 0.0017 34.6 3.7 30 462-494 177-206 (414)
247 PF02882 THF_DHG_CYH_C: Tetrah 24.3 92 0.002 29.5 3.8 42 451-494 19-65 (160)
248 COG0205 PfkA 6-phosphofructoki 24.2 1.3E+02 0.0028 32.1 5.2 91 393-493 15-122 (347)
249 PRK05476 S-adenosyl-L-homocyst 24.1 1.6E+02 0.0035 32.2 6.0 33 459-494 208-240 (425)
250 TIGR00658 orni_carb_tr ornithi 24.0 2.5E+02 0.0053 29.2 7.2 87 406-494 61-177 (304)
251 PRK12749 quinate/shikimate deh 24.0 1.1E+02 0.0023 31.5 4.5 89 383-493 63-152 (288)
252 cd07125 ALDH_PutA-P5CDH Delta( 23.9 1.3E+02 0.0029 33.3 5.5 51 439-494 224-278 (518)
253 PF07338 DUF1471: Protein of u 23.8 95 0.0021 24.3 3.2 16 399-414 20-36 (56)
254 PF03808 Glyco_tran_WecB: Glyc 23.7 79 0.0017 29.8 3.2 48 443-493 29-78 (172)
255 PF00171 Aldedh: Aldehyde dehy 23.6 1.5E+02 0.0032 32.2 5.7 53 437-494 182-234 (462)
256 cd03522 MoeA_like MoeA_like. T 23.5 84 0.0018 32.9 3.6 40 410-450 126-171 (312)
257 PRK06407 ornithine cyclodeamin 23.3 2.1E+02 0.0046 29.5 6.5 72 407-487 60-138 (301)
258 PF07492 Trehalase_Ca-bi: Neut 23.2 38 0.00083 23.6 0.7 11 407-417 19-29 (30)
259 PF01867 Cas_Cas1: CRISPR asso 23.1 55 0.0012 33.1 2.2 37 455-494 26-63 (282)
260 PRK09850 pseudouridine kinase; 22.8 1.3E+02 0.0028 30.4 4.8 68 385-456 182-264 (313)
261 PRK12550 shikimate 5-dehydroge 22.7 1.1E+02 0.0024 31.2 4.3 45 446-494 106-151 (272)
262 PF00491 Arginase: Arginase fa 22.7 1.2E+02 0.0027 30.3 4.6 99 391-493 61-174 (277)
263 cd07079 ALDH_F18-19_ProA-GPR G 22.7 1.2E+02 0.0026 32.5 4.8 48 439-494 168-217 (406)
264 PRK01747 mnmC bifunctional tRN 22.6 93 0.002 35.4 4.1 28 464-494 261-288 (662)
265 PRK11916 electron transfer fla 22.6 1E+02 0.0022 32.4 4.0 79 401-488 19-101 (312)
266 PLN02477 glutamate dehydrogena 22.5 95 0.0021 33.8 3.9 27 464-493 207-233 (410)
267 PF13278 DUF4066: Putative ami 22.4 69 0.0015 29.2 2.5 63 391-454 74-153 (166)
268 TIGR00216 ispH_lytB (E)-4-hydr 22.3 1.8E+02 0.0038 30.2 5.6 36 394-429 13-52 (280)
269 PLN02527 aspartate carbamoyltr 22.3 3E+02 0.0064 28.7 7.4 89 406-494 61-183 (306)
270 PLN02315 aldehyde dehydrogenas 22.1 1.5E+02 0.0032 33.0 5.4 31 461-494 235-265 (508)
271 PF14542 Acetyltransf_CG: GCN5 22.1 94 0.002 25.6 3.0 22 395-416 40-61 (78)
272 COG1398 OLE1 Fatty-acid desatu 21.9 1.5E+02 0.0032 30.9 4.8 20 237-256 227-246 (289)
273 cd08267 MDR1 Medium chain dehy 21.9 3.1E+02 0.0067 26.7 7.2 80 408-494 81-173 (319)
274 PRK14191 bifunctional 5,10-met 21.9 1.3E+02 0.0027 31.4 4.5 43 450-494 139-186 (285)
275 PRK00779 ornithine carbamoyltr 21.8 3.1E+02 0.0068 28.4 7.4 88 405-494 64-181 (304)
276 cd08268 MDR2 Medium chain dehy 21.8 2E+02 0.0043 28.0 5.8 34 458-494 141-174 (328)
277 PRK14183 bifunctional 5,10-met 21.7 1.4E+02 0.0031 30.9 4.8 43 450-494 139-186 (281)
278 PLN02278 succinic semialdehyde 21.6 1.6E+02 0.0036 32.4 5.6 49 441-494 219-268 (498)
279 cd05006 SIS_GmhA Phosphoheptos 21.5 83 0.0018 29.3 2.9 21 396-416 114-134 (177)
280 TIGR03330 SAM_DCase_Bsu S-aden 21.5 2.1E+02 0.0045 25.4 5.3 77 392-493 16-107 (112)
281 PRK09406 gabD1 succinic semial 21.4 1.7E+02 0.0037 31.8 5.7 30 462-494 201-230 (457)
282 PF04954 SIP: Siderophore-inte 21.4 3.1E+02 0.0067 24.1 6.4 86 391-490 12-105 (119)
283 cd03400 Band_7_1 A subgroup of 21.3 68 0.0015 28.1 2.1 41 378-418 66-107 (124)
284 PRK15062 hydrogenase isoenzyme 21.1 32 0.0007 36.8 0.0 106 375-487 37-153 (364)
285 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.1 91 0.002 26.8 2.9 29 391-419 54-82 (126)
286 PRK14179 bifunctional 5,10-met 21.1 1.3E+02 0.0029 31.1 4.5 43 450-494 140-187 (284)
287 PRK07589 ornithine cyclodeamin 21.0 2.7E+02 0.0058 29.6 6.8 77 408-487 65-150 (346)
288 TIGR01647 ATPase-IIIA_H plasma 20.8 2E+02 0.0044 33.6 6.4 65 394-459 400-479 (755)
289 cd08259 Zn_ADH5 Alcohol dehydr 20.8 1.6E+02 0.0034 29.2 4.9 29 464-494 164-192 (332)
290 COG4567 Response regulator con 20.6 1.3E+02 0.0029 28.9 3.9 40 439-481 58-97 (182)
291 cd08342 HPPD_N_like N-terminal 20.5 1.4E+02 0.0031 26.1 4.1 43 399-446 80-122 (136)
292 PLN02256 arogenate dehydrogena 20.5 1.9E+02 0.0041 29.9 5.5 58 434-494 4-64 (304)
293 COG1184 GCD2 Translation initi 20.5 2.4E+02 0.0053 29.6 6.2 53 441-494 121-175 (301)
294 cd07140 ALDH_F1L_FTFDH 10-form 20.4 2.2E+02 0.0048 31.4 6.3 52 439-494 204-256 (486)
295 COG1018 Hmp Flavodoxin reducta 20.4 1.4E+02 0.003 30.5 4.4 58 431-491 159-221 (266)
296 cd07094 ALDH_F21_LactADH-like 20.2 1.7E+02 0.0037 31.5 5.3 40 441-485 182-222 (453)
297 PRK13940 glutamyl-tRNA reducta 20.2 1.1E+02 0.0023 33.4 3.7 27 462-491 180-206 (414)
298 smart00506 A1pp Appr-1"-p proc 20.0 2.6E+02 0.0057 24.2 5.6 43 378-422 78-120 (133)
No 1
>PLN02869 fatty aldehyde decarbonylase
Probab=100.00 E-value=9.6e-160 Score=1274.12 Aligned_cols=476 Identities=75% Similarity=1.309 Sum_probs=458.2
Q ss_pred CCCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHhhhcccccCCccchhhHHHHHHHHHHHhHHHHhhcchhhHhcCcCC
Q 011017 1 MASKPGILTEWPWKPLGSYKHVVLAPWAMHSIYCFIGSRKSERDYAYFLIFPFLLLRMLHDQIWISLSRYRTAKRNNRIV 80 (495)
Q Consensus 1 ~~~~~~~l~~wpw~~lg~~ky~~~~p~~~~~~~~~~~~~~~~~~~~~~~il~~~llR~l~~~~wi~~~~~~~~~~k~KIq 80 (495)
||++||+||+|||++||||||++|||+|++++|++.++++++.|+.|+++++++++|++++|+|++++|++++++|+||+
T Consensus 1 ma~~pg~lt~wpW~~lG~~Ky~~~~p~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~l~~q~W~s~sr~~~~~~~~ri~ 80 (620)
T PLN02869 1 MASKPGILTDWPWKPLGSFKYVVLAPWVIHSIYSFVVKDEKERDLSYFLIFPFLLWRMLHNQLWISLSRYRTAKGNNRIV 80 (620)
T ss_pred CCCCCcccccCcccccCCeeeeeehHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhceeee
Confidence 99999999999999999999999999999999999999877788889999999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhcchhhHHHHHHHHHHHHHhcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhccc
Q 011017 81 DKAIEFDQVDRERNWDDQIVFNGLIFYIVRMLIPPSYSNLRFWRSDGVILTILVHMGPVEFLYYWFHRALHHHYLYSRYH 160 (495)
Q Consensus 81 ~~~~~~~qvdrE~~~~n~iil~~ll~~~~~~~~p~~~~~lP~W~~~g~i~~lll~llv~Df~fYw~HRllH~~~Ly~riH 160 (495)
+|+++|||+|||++||||||+|.++++++++.+| ..+++|.|+..|++..+++|+++.|++|||+||++|++++||++|
T Consensus 81 ~~~i~f~QvDre~~wDd~iil~~l~~~~~~~~~p-~~~~~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~H 159 (620)
T PLN02869 81 DKGIEFEQVDRERNWDDQILFNGILFYVGYMILP-GASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYH 159 (620)
T ss_pred ccCCCceeeccccccchHHHHHHHHHHHHHHhhh-hhhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccCceecccccccccCCcc
Q 011017 161 SHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLK 240 (495)
Q Consensus 161 k~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~llg~~si~~~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~ 240 (495)
++||++.+|+|+|+..+++.|++.+.+.+.+|+++..+.+..|+.++++|+++.++.++++|||+|++|+++++.+|+++
T Consensus 160 kvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLk 239 (620)
T PLN02869 160 SHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLK 239 (620)
T ss_pred hhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcch
Confidence 99999999999999854446888877778889987767777789999999999999999999999999999888889999
Q ss_pred cccCChhhhHHHhhcCCCCcccccchhhhhcCCCCCCChhHHHHhhcCCCccccccCCCCCeEEecccCCccccccccch
Q 011017 241 FLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRSSDSVYEKSLKRSGEEEEESADDVDVVHLTHLTTPESIYHLRIG 320 (495)
Q Consensus 241 ~li~tp~~H~lHH~~~~~NYG~~f~lWDrLFGT~~~~~~~~~~~~~~g~~~~~~~~~~~pd~V~L~h~~~~~s~~h~~~~ 320 (495)
|+++||++|++||+++++|||.+|++|||+|||+++++++.+|+...+.+ ++||||||||+||++|+||+|||
T Consensus 240 yll~TPsfHdlHHs~fd~NYGlfF~~WDrLFGT~d~~s~~l~e~~~~~~~-------~~pd~V~l~H~t~~~s~~h~~~~ 312 (620)
T PLN02869 240 YLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTMDKSSDTLYEKSLKRPE-------EIPDVVHLTHLTTPDSIYHLRLG 312 (620)
T ss_pred heecCchHHhHHhccCCcCcccchHHHHhccCCCCCCchhHHHHhhcCcc-------cCCCEEEEeccCCHHHhhccchH
Confidence 99999999999999999999999999999999999999999999887655 79999999999999999999999
Q ss_pred hhhhccCCCcccccccchhhhhhhhhHHHHHHHHHHHhcceeEeeccccCcccceeEEeeccCceeccchhhhhhHHHHH
Q 011017 321 FASLASKPHRYTYTLSQWYLQLLWPFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIE 400 (495)
Q Consensus 321 ~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~w~~pr~~~~y~~~~~~~~in~~ie 400 (495)
|||+||+||+ + +||||||||+| +++|+++|+|||||++|+|+|||+++|||+||||||||++|+++|+||++||
T Consensus 313 ~~s~as~p~~--~---~~~l~~~wp~~-~~~m~~~w~~~~~f~~~~~~~~~~~~~tw~vpr~~~qy~~~~~~~~in~~Ie 386 (620)
T PLN02869 313 FASLASKPYI--S---KWYLRLMWPVT-SWSMMLTWIYGRTFVLERNRFNKLNLQTWVIPKYKIQYLLKWQNESINSLIE 386 (620)
T ss_pred HHHhccCCcc--c---hhHHHHHHHHH-HHHHHHHHHhCCceEeeeeeccceeeeEEEeccccccccCchhhhhHHHHHH
Confidence 9999999999 7 99999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHH
Q 011017 401 EAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANA 480 (495)
Q Consensus 401 ~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a 480 (495)
|||+||||+||||+|||+|||||+|||||||||+||| +|||||||||||||||||||||+|||||||||++ ||||||
T Consensus 387 ~ail~ad~~Gvkv~sLg~LNk~~~LN~~G~l~v~k~p-~L~vrvv~G~tLtaAvvln~ip~~~~~vfl~G~~--sK~~ra 463 (620)
T PLN02869 387 EAILEADKRGVKVLSLGLLNQGEELNRYGELYIHRNP-KLKIKVVDGSSLAVAVVLNSIPKGTTQVLFRGNL--SKVAYF 463 (620)
T ss_pred HHHHHHHhcCCEEEechhcchhhhhcCCceEeeecCC-CcceEEEeCCchHHHHHHHhcCCCCceEEEecCc--cHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999 799999
Q ss_pred HHHHHhhcCcEee
Q 011017 481 VASSLCQMGIKVS 493 (495)
Q Consensus 481 ~a~~lc~~~~~v~ 493 (495)
||+|||||||||+
T Consensus 464 ia~~lc~r~i~~~ 476 (620)
T PLN02869 464 IASALCQRGIQVA 476 (620)
T ss_pred HHHHHHhcCCeEe
Confidence 9999999999963
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=4e-34 Score=283.90 Aligned_cols=215 Identities=19% Similarity=0.264 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHhHHHHhh--cchhhHhcCcCCCCCCCcchhhhhhcch-----hhHHHHHHHHHHHHHhcC----CCCC
Q 011017 50 IFPFLLLRMLHDQIWISLS--RYRTAKRNNRIVDKAIEFDQVDRERNWD-----DQIVFNGLIFYIVRMLIP----PSYS 118 (495)
Q Consensus 50 il~~~llR~l~~~~wi~~~--~~~~~~~k~KIq~~~~~~~qvdrE~~~~-----n~iil~~ll~~~~~~~~p----~~~~ 118 (495)
++...+.-++.+..|+.++ +++++.+|||||+++.+ ..++.++|. ||++++.++..+.+...+ +...
T Consensus 35 ~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~--s~~~~~kc~k~vl~n~~~v~~p~~~~~y~~~~~~~~~~~~ 112 (283)
T KOG0873|consen 35 FIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNP--SLSKQLKCLKVVLLNHFLVVLPLTLVSYPFVEWFGLPSGA 112 (283)
T ss_pred HHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHhCCCcCC
Confidence 4444455555566666544 46889999999998764 445555553 666666666555554332 0224
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHH
Q 011017 119 NLRFWRSDGVILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMV 198 (495)
Q Consensus 119 ~lP~W~~~g~i~~lll~llv~Df~fYw~HRllH~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~l 198 (495)
.+|.|.+ ++.+++++++++|+.|||.||++|++++|+.+||+||++.+|.+.++.|+||+|+++.++. |++++.+
T Consensus 113 plPt~~~--~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~---~~~~p~~ 187 (283)
T KOG0873|consen 113 PLPSWKE--MLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLG---TVMGPAL 187 (283)
T ss_pred CCCcHHH--HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCCh---hhhhhHH
Confidence 5777766 8999999999999999999999999999999999999999999999999999999988763 3444434
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhcCCCCcccccchhhhhcCCCCCC
Q 011017 199 LKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRS 277 (495)
Q Consensus 199 lg~~si~~~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~~~~NYG~~f~lWDrLFGT~~~~ 277 (495)
++. |+.+.++|+++..+.++..||||++ |+++.+.+|+ ..++++||+||..+.+||+..|+.|||++||....
T Consensus 188 ~~~-H~~t~wiw~~l~i~~t~~~HsGY~f-Pwsl~~~~pf----y~ga~~HD~HH~~f~~n~~~~f~~~D~i~GTd~~~ 260 (283)
T KOG0873|consen 188 LCG-HVITLWIWIALRILETVESHSGYDF-PWSLSKLIPF----YGGAEHHDYHHLVFIGNFASVFGYLDRIHGTDSTY 260 (283)
T ss_pred hhh-HHHHHHHHHHHHHHHHhhccCCCCC-CccccccCcc----cCCCcccchhhhhccccccchhHHHHHHhccCccH
Confidence 443 9999999999999999999999997 9998888776 35899999999999999999999999999999754
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.95 E-value=3.8e-28 Score=243.44 Aligned_cols=155 Identities=26% Similarity=0.435 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 011017 127 GVILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIAS 206 (495)
Q Consensus 127 g~i~~lll~llv~Df~fYw~HRllH~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~llg~~si~~ 206 (495)
.+++++++.+++.|+.+||.||+.|+.++||++|++||++++|+++|+.+.||+|.++......+|+.++ + .+..+
T Consensus 94 ~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~---~-~~~~~ 169 (271)
T COG3000 94 PFALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLL---G-LSPVA 169 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHh---c-CCHHH
Confidence 3577888888999999999999999999999999999999999999999999999999877655565432 3 47777
Q ss_pred HHHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhcC--CCCcccccchhhhhcCCCCCCChhHHHH
Q 011017 207 FVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQF--RTNYSLFMPIYDYIYGTIDRSSDSVYEK 284 (495)
Q Consensus 207 ~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~~--~~NYG~~f~lWDrLFGT~~~~~~~~~~~ 284 (495)
+..+.++..+.+.++|||++. | . .+++++.++.+|++|++||+++ ++|||.++++|||+|||+.++.++..++
T Consensus 170 ~~~~~~~~~~~~~~~H~~~~~-~-~---~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~~~~~ 244 (271)
T COG3000 170 VALLFIFLLFWAVLIHSNLDL-P-L---PLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDEREPDK 244 (271)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c-C---CcccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCcccCccc
Confidence 778888889999999999986 4 2 1355666789999999999997 4999999999999999999998888887
Q ss_pred hhcCCC
Q 011017 285 SLKRSG 290 (495)
Q Consensus 285 ~~~g~~ 290 (495)
+..+.+
T Consensus 245 ~~~~~~ 250 (271)
T COG3000 245 IGVKAK 250 (271)
T ss_pred cccccc
Confidence 665544
No 4
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.89 E-value=6.1e-23 Score=202.20 Aligned_cols=144 Identities=20% Similarity=0.373 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 011017 128 VILTILVHMGPVEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIASF 207 (495)
Q Consensus 128 ~i~~lll~llv~Df~fYw~HRllH~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~llg~~si~~~ 207 (495)
.++.+.++++..||.+||.||.+|++.+||+.|+.||.++..+|+++.++||++.++.++ |-.+..+..+.|..+.
T Consensus 128 ~~~~i~~flfF~Df~iYw~HR~lH~~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqai----p~~I~~Fi~Plh~~t~ 203 (312)
T KOG0872|consen 128 LFVSIFLFLFFTDFGIYWAHRELHHRGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAI----PYHIYPFIFPLHKVTY 203 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcchhhhhhccCchhhhhcCcchhHhhhc----hhHheeeeecchHHHH
Confidence 677777788899999999999999999999999999999999999999999999988764 5444333444566776
Q ss_pred HHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhcCCCCcccccchhhhhcCCCCCCChhHHHHh
Q 011017 208 VGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQFRTNYSLFMPIYDYIYGTIDRSSDSVYEKS 285 (495)
Q Consensus 208 ~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~~~~NYG~~f~lWDrLFGT~~~~~~~~~~~~ 285 (495)
.+...+..+++++.|.|.-. -+.+.++||.+|..||..++.|||.++++|||+|||+..+.++.++..
T Consensus 204 L~l~~f~~iwt~~IHd~~~~----------~l~~~ingaahHtvHH~~f~~NYG~~tilwDrmfgSfr~p~~~~~d~~ 271 (312)
T KOG0872|consen 204 LSLFTFVNIWTISIHDGIYG----------SLNPPINGAAHHTVHHTYFDYNYGQYTILWDRMFGSFRAPDHEDFDIY 271 (312)
T ss_pred HHHHHHHHhHheeeeccccc----------cccCccccccccceeeeeEecCCCcEEEeHHhccCcccCccccccchh
Confidence 66666778888999988642 133457899999999999999999999999999999999888766533
No 5
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=99.82 E-value=2.6e-21 Score=185.64 Aligned_cols=147 Identities=20% Similarity=0.355 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-hhhhhhcccccccccccCCcchhhcchhhhHHHHHHH-HHHHHHHHHHhhhhhHH
Q 011017 128 VILTILVHMGPVEFLYYWFHRALH-HHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLL-FAIPLVTTMVLKNASIA 205 (495)
Q Consensus 128 ~i~~lll~llv~Df~fYw~HRllH-~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l-~~iPll~~~llg~~si~ 205 (495)
...++...+++.|.+.|++||.|| .+.+|+.+|++||+-.+|.+..|.|.||+|.++...+ -++..+ +.|. ++-
T Consensus 122 ~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l---~sgl-spr 197 (287)
T KOG0874|consen 122 LARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFL---LSGL-SPR 197 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHH---HcCC-Ccc
Confidence 356778888999999999999999 5889999999999999999999999999999987643 112211 1232 333
Q ss_pred HHHHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhc--CCCCcc-cccchhhhhcCCCCCCChhHH
Q 011017 206 SFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ--FRTNYS-LFMPIYDYIYGTIDRSSDSVY 282 (495)
Q Consensus 206 ~~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~--~~~NYG-~~f~lWDrLFGT~~~~~~~~~ 282 (495)
+..++..+.++-++.+||||-+ |..+++.+ +-+.+.+||+||.. ...||+ .+|++||+++||+.+.+.|..
T Consensus 198 ~aiifFtfaTiKTVDDHCGy~l-P~dpfqm~-----F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~~~E~~ 271 (287)
T KOG0874|consen 198 TAIIFFTFATIKTVDDHCGYWL-PGDPFQMF-----FPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPYSLEKR 271 (287)
T ss_pred ceEEEEEeeeeeeecccccccc-CCCceeEe-----ccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCchhccc
Confidence 3333344456667889999965 88766543 23679999999998 688997 689999999999998866544
Q ss_pred HH
Q 011017 283 EK 284 (495)
Q Consensus 283 ~~ 284 (495)
.+
T Consensus 272 ~e 273 (287)
T KOG0874|consen 272 LE 273 (287)
T ss_pred cc
Confidence 43
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.72 E-value=9.8e-18 Score=144.49 Aligned_cols=111 Identities=29% Similarity=0.480 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhhc-hhhhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011017 134 VHMGPVEFLYYWFHRALH-HHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVLKNASIASFVGYII 212 (495)
Q Consensus 134 l~llv~Df~fYw~HRllH-~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~llg~~si~~~~~y~i 212 (495)
+.+++.|+++||+||++| .+++| ++|+.||++++|+++++.+.+|+|.++..++ +++++.+++..+..++.++.+
T Consensus 3 ~~~l~~d~~~Y~~HRl~H~~~~l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T PF04116_consen 3 LGFLLWDFWEYWMHRLLHKIPFLW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALL---PLLLPLLLLPFHALAFLLGIA 78 (114)
T ss_pred eeHHHHHHHHHHHHHHHhcCchHH-HHHHHHhCCcccCchHHHHcChHHHHHHHHH---HHHHHHHHHhHhHHHHHHHHH
Confidence 456788999999999999 55555 9999999999999999999999999987753 333333345557778888888
Q ss_pred HHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhh
Q 011017 213 YVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHT 254 (495)
Q Consensus 213 ~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~ 254 (495)
+..+.+.++|||+.. + ..+..+++..+|++|+.||+
T Consensus 79 ~~~~~~~~~H~~~~~-~-----~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 79 LFYLWYIFIHSGYHH-R-----FPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHhhcCccC-C-----CCCcchhHhcCHHHHHhhCc
Confidence 889999999999921 1 12456777889999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=98.99 E-value=8.8e-09 Score=102.11 Aligned_cols=134 Identities=21% Similarity=0.317 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hchh-------hhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHHHh
Q 011017 128 VILTILVHMGPVEFLYYWFHRA-LHHH-------YLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTMVL 199 (495)
Q Consensus 128 ~i~~lll~llv~Df~fYw~HRl-lH~~-------~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~ll 199 (495)
.+..+++.+++.-+.+|.+||. +|.. .+....|..||.. |....-..++|.-.++....+..++. .++
T Consensus 83 ~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~--P~D~~rLv~PP~~~~~l~~~~~~l~~--~~~ 158 (237)
T PLN02434 83 VVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKH--PMDGLRLVFPPAATAILCVPFWNLIA--LFA 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcC--CCCCCCeecCcHHHHHHHHHHHHHHH--HHc
Confidence 3555667788899999999998 6852 2334578899965 44444445677654444332221111 111
Q ss_pred hh-----hhHHHHHHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhc-CCCCcccccchhhhhcCC
Q 011017 200 KN-----ASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGT 273 (495)
Q Consensus 200 g~-----~si~~~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~-~~~NYG~~f~lWDrLFGT 273 (495)
+. .-...+.+|++| +......|.+ + |.. ++++. --++|..||-+ .+.|||.+.++||++|||
T Consensus 159 ~~~~a~~~~~G~l~gYl~Y-d~~Hy~lH~~-~--p~~-----~~~r~---lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT 226 (237)
T PLN02434 159 TPATAPALFGGGLLGYVMY-DCTHYFLHHG-Q--PST-----DVLRN---LKKYHLNHHFRDQDKGFGITSSLWDRVFGT 226 (237)
T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHhc-C--cch-----HHHHH---HHHHHHHHcCCCCCCCCCcCchHHHHhcCC
Confidence 11 012234455544 4556666764 2 321 22232 47899999977 699999999999999999
Q ss_pred CCCC
Q 011017 274 IDRS 277 (495)
Q Consensus 274 ~~~~ 277 (495)
..++
T Consensus 227 ~~~~ 230 (237)
T PLN02434 227 LPPS 230 (237)
T ss_pred CCCc
Confidence 9554
No 8
>PRK14982 acyl-ACP reductase; Provisional
Probab=98.17 E-value=1.1e-05 Score=84.39 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=106.2
Q ss_pred eEEecccCCcccccc--ccchhhhhccCCCcccccccchhhhhhhhhHHHHHHHHHHHhcceeEeeccccCcc---ccee
Q 011017 302 VVHLTHLTTPESIYH--LRIGFASLASKPHRYTYTLSQWYLQLLWPFTASCSVLVSWIYGRTFVSESNTLDKL---KLQT 376 (495)
Q Consensus 302 ~V~L~h~~~~~s~~h--~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~ 376 (495)
|.|+.|.++.++.=+ ..++|+ .|. |-. +..|....+|++++-+.+.- ..+-
T Consensus 2 f~fi~H~~~~~~~~~~~~~~~~~-----~~~--------------~~~-----l~~~~~~~p~~~~~~~v~S~~g~~~eg 57 (340)
T PRK14982 2 FGLIGHLTSLEHAQRVARELGYD-----EYA--------------DQD-----LDFWCSAPPQLVDHIEVTSATGQTIEG 57 (340)
T ss_pred EEEEeccCCHHHhHHHHhcCCcc-----ccC--------------hHh-----HHHHhhCCCeEeeeEEEEeCCCCEEEE
Confidence 789999999987442 223221 121 222 12244456888887766544 3366
Q ss_pred EEe--eccCceeccchhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeec-cCCCCcce---EEecCCch
Q 011017 377 WVV--PRYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLE-RQPNKLKI---KVVDGSSL 450 (495)
Q Consensus 377 w~~--pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~-~~p~~l~~---~vv~g~~l 450 (495)
|.| |-.+=|- ...+.+..=+.|.+|+..|++.|++|..||...+--. +++.+-++ +-. ++.+ ++-+|||+
T Consensus 58 ~~i~~~~~pe~l-~~~~~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~--~~~~~~~~~~~r-~i~ie~~~~TtGNs~ 133 (340)
T PRK14982 58 KYIESCFLPEML-SNRRFKTARRKVLNAMALAQKKGINITALGGFSSIIF--ENFNLLQHKQVR-NTTLEWERFTTGNTH 133 (340)
T ss_pred EEEeCCCCHHHH-hccChHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhc--CCcccccccccc-cceeccccccCCchh
Confidence 776 3333233 3223344446788899999999999999999877543 22333332 224 6667 79999999
Q ss_pred hhHhhhhcCCC---------CCceEEEeccCCchhHHHHHHHHHhhc-Cc-Eee
Q 011017 451 AAAVVVNSLPK---------TTAHVLLRGTVTANKVANAVASSLCQM-GI-KVS 493 (495)
Q Consensus 451 ~~a~v~~~ip~---------~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~-~v~ 493 (495)
||++....+.. .-+.|++||++ +.+|+.+|..|+++ |+ +++
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAt--G~IGs~lar~L~~~~gv~~li 185 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGAT--GDIGSAVCRWLDAKTGVAELL 185 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccC--hHHHHHHHHHHHhhCCCCEEE
Confidence 99998766531 34789999999 69999999999865 65 443
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=97.74 E-value=8.7e-05 Score=72.23 Aligned_cols=135 Identities=20% Similarity=0.318 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-hchhh---hh------hcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHHH--H
Q 011017 131 TILVHMGPVEFLYYWFHRA-LHHHY---LY------SRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTTM--V 198 (495)
Q Consensus 131 ~lll~llv~Df~fYw~HRl-lH~~~---Ly------~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~~--l 198 (495)
-+++.++...+.+|-.||+ +|.++ =| --+|..||.. |..-.-..++|.-..+....+..++-... .
T Consensus 86 ~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~--P~D~~RLVfPP~~~~il~~pfy~~~~~vl~~~ 163 (240)
T KOG0539|consen 86 LFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKL--PMDGYRLVFPPTPFAILAAPFYLILSLVLPHP 163 (240)
T ss_pred HHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccC--CCCCceEecCCchHHHHHHHHHHHHHHhcCcc
Confidence 3456677889999999998 57541 11 1368899965 33333446777766665543333222110 0
Q ss_pred hh-hhhHHHHHHHHHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhc-CCCCcccccchhhhhcCCCCC
Q 011017 199 LK-NASIASFVGYIIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTIDR 276 (495)
Q Consensus 199 lg-~~si~~~~~y~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~-~~~NYG~~f~lWDrLFGT~~~ 276 (495)
.+ ..-...+++|+.+- .....-|-|-- |+. |.++ ..-.+|.-||-+ .+.-||....+||++|||.-+
T Consensus 164 ~~~a~faG~l~GYV~YD-mtHYyLHhg~p--~~~-----~~~~---~lK~yHl~HHfk~q~~GfGItS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 164 VAPAGFAGGLLGYVCYD-MTHYYLHHGSP--PKR-----PYLK---HLKKYHLNHHFKHQDLGFGITSSLWDYVFGTLGP 232 (240)
T ss_pred hhhhhhccchhhhhhhh-hhhhhhhcCCC--CCc-----hHHH---HHHHHHhhhhhhccccCccccHHHHHHHhccCCC
Confidence 00 01123456777664 34444444321 221 2222 246789999977 899999999999999999977
Q ss_pred CC
Q 011017 277 SS 278 (495)
Q Consensus 277 ~~ 278 (495)
..
T Consensus 233 ~~ 234 (240)
T KOG0539|consen 233 LK 234 (240)
T ss_pred Cc
Confidence 64
No 10
>PLN02601 beta-carotene hydroxylase
Probab=97.42 E-value=0.0014 Score=66.17 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh-hchhhhhhcccccccccccCCcchhhcchhhhHHHHHHHHHHHHHHH
Q 011017 118 SNLRFWRSDGVILTILVHMGPVEFLYYWFHRA-LHHHYLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLLFAIPLVTT 196 (495)
Q Consensus 118 ~~lP~W~~~g~i~~lll~llv~Df~fYw~HRl-lH~~~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l~~iPll~~ 196 (495)
.++|.-.-.+.+..++..++..|++-.|.||. ||. +.|..|+-||+...- ++- ..+. +++++.+|.+.+
T Consensus 126 g~~p~~em~~~~al~lgtfvgMEf~Aw~aHKYvMHG--~LW~lH~sHH~Pr~g-~FE--~NDl-----FaVifAvpAIaL 195 (303)
T PLN02601 126 GEVSMLEMFGTFALSVGAAVGMEFWARWAHRALWHD--SLWNMHESHHKPREG-AFE--LNDV-----FAIVNAVPAIGL 195 (303)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchhhhhhcCCCCCC-Ccc--cccc-----hhhhhHHHHHHH
Confidence 35564222223333445566789999999997 676 357899999987642 222 1111 111223343333
Q ss_pred HHhhhhh-----------HHHHHHH-HHHHHHHhhhcccCceecccccccccCCcccccCChhhhHHHhhc--CCCCccc
Q 011017 197 MVLKNAS-----------IASFVGY-IIYVDFMNNMGHCNFEFIPMWLFTVFPPLKFLMYTPSYHSLHHTQ--FRTNYSL 262 (495)
Q Consensus 197 ~llg~~s-----------i~~~~~y-~i~~~~~~~~~HsG~e~~P~~l~~~lp~L~~li~tp~~H~lHH~~--~~~NYG~ 262 (495)
+..|..+ -..+.+| ++|+.+...+.|--+ |.....+-|+++. -...|.+||+. ...+||.
T Consensus 196 ~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRf---p~~~~a~~~Y~rr---l~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 196 LYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRF---PVGPIANVPYLRK---VAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhcccc---ccCCCCCCHHHHH---HHHHHHhhccCCcCCccceE
Confidence 3333210 0111122 234545556666433 3222222244443 47899999983 6789998
Q ss_pred ccc
Q 011017 263 FMP 265 (495)
Q Consensus 263 ~f~ 265 (495)
++.
T Consensus 270 ll~ 272 (303)
T PLN02601 270 FLG 272 (303)
T ss_pred Eec
Confidence 654
No 11
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.00 E-value=0.0021 Score=68.90 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhchhhhhhcccccccccccCCcch---------hhcchhhhHHHHHHHHHHHHHHHH-Hhhh------h
Q 011017 139 VEFLYYWFHRALHHHYLYSRYHSHHHSSVVTEPIT---------SVIHPFAEHIVYFLLFAIPLVTTM-VLKN------A 202 (495)
Q Consensus 139 ~Df~fYw~HRllH~~~Ly~riHk~HHss~~p~p~t---------a~~~hplE~ll~~~l~~iPll~~~-llg~------~ 202 (495)
.|..+=.+|-+.|....+.|.|..||+.-.++--- ..|+.|.|+++..++-.+|..+.. .... .
T Consensus 19 ~~~~~d~~h~~~h~~~~l~~~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (406)
T PRK07424 19 VEIVRDSYHALAHQWNPLYRLHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNVPYGWLAWL 98 (406)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcccccchhhh
Confidence 44444455555555445568999999998877432 458899997765543233332221 1000 0
Q ss_pred hHHHHHHHH---HHHHHHhhhcc-cCcee--cccccccccCCcccccCChhhhHHHhhcCC-CCcccccchhhhhcCCCC
Q 011017 203 SIASFVGYI---IYVDFMNNMGH-CNFEF--IPMWLFTVFPPLKFLMYTPSYHSLHHTQFR-TNYSLFMPIYDYIYGTID 275 (495)
Q Consensus 203 si~~~~~y~---i~~~~~~~~~H-sG~e~--~P~~l~~~lp~L~~li~tp~~H~lHH~~~~-~NYG~~f~lWDrLFGT~~ 275 (495)
.......++ +.... .+... ++-|. +|..+. . ++-.| +..+.||-.||-..+ .-||.++++-|+..||..
T Consensus 99 ~~~~~~~~~~~~~~r~~-~~~~~~~~~d~~h~~~~~~-~-~~~~~-~v~~~~h~rh~~~~~~~~~~~~~~~~d~~~~ta~ 174 (406)
T PRK07424 99 GVLYTLTFLFGAIARGL-GLPNADELTDLTHLPGPFE-T-LPSQW-FVNRPYHWRHHFDNQNAYYCGTFTLVDKLMGTAL 174 (406)
T ss_pred hhHHHHHHHHHHHHHhc-ccccccccccccCCCCccc-C-CCccC-eecCceeEEEEeccccceeeeeEEEeehhcCccc
Confidence 011111111 11111 11122 21221 233221 1 22234 457899999998865 777999999999999975
Q ss_pred C
Q 011017 276 R 276 (495)
Q Consensus 276 ~ 276 (495)
.
T Consensus 175 s 175 (406)
T PRK07424 175 S 175 (406)
T ss_pred C
Confidence 3
No 12
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=94.03 E-value=0.12 Score=49.83 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=38.5
Q ss_pred HhhhcccCceeccccc--ccccCCcccccCChhhhHHHhhc-CCCCcccccchhhhhcCCC
Q 011017 217 MNNMGHCNFEFIPMWL--FTVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTI 274 (495)
Q Consensus 217 ~~~~~HsG~e~~P~~l--~~~lp~L~~li~tp~~H~lHH~~-~~~NYG~~f~lWDrLFGT~ 274 (495)
..-+.|.... .|.+. .++.+ ++.+|++|..||.. +++|||...++||.+....
T Consensus 101 ~HkWsH~~~~-~P~~V~~LQ~~g----illsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~~ 156 (178)
T PF10520_consen 101 FHKWSHTYKS-LPPWVRFLQDAG----ILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDKI 156 (178)
T ss_pred HHHHHcCCCC-CCHHHHHHHHCC----cccCchhhhccccCcccCCeEeecccchHHHHHh
Confidence 3456787555 45431 12223 45799999999999 8999999999999887644
No 13
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.05 E-value=0.33 Score=54.50 Aligned_cols=59 Identities=20% Similarity=0.481 Sum_probs=45.3
Q ss_pred ccCCCCcceEEec------CCchhhHhhhhcCCC-----CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 434 ERQPNKLKIKVVD------GSSLAAAVVVNSLPK-----TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 434 ~~~p~~l~~~vv~------g~~l~~a~v~~~ip~-----~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+|||+.-+.|..| |.+...+....-+|+ +-+-|++||++ +.+|++++..|+++|.+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gKvVLVTGAT--GgIG~aLAr~LLk~G~~Vva 109 (576)
T PLN03209 40 SKHPHSRKLRSLDIKAQASGATKFSSAAIEAIPKELDTKDEDLAFVAGAT--GKVGSRTVRELLKLGFRVRA 109 (576)
T ss_pred ccCcccccccccchhhccccchhhhhhhhhccccccccCCCCEEEEECCC--CHHHHHHHHHHHHCCCeEEE
Confidence 4677655666654 555556677777885 33579999999 69999999999999999864
No 14
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=88.70 E-value=0.98 Score=46.49 Aligned_cols=97 Identities=22% Similarity=0.161 Sum_probs=67.4
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeec-cCCCCcceEEecCCchhhHhhhhcCCC-------
Q 011017 390 WRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLE-RQPNKLKIKVVDGSSLAAAVVVNSLPK------- 461 (495)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~-~~p~~l~~~vv~g~~l~~a~v~~~ip~------- 461 (495)
++-+++-+-+-+|+.-|+|.|+.|.+||.----- ++=+..++ +.|.---+|+-.|||+||-++..++=+
T Consensus 87 s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIV---gn~~~n~q~~~~e~t~~~~ttgns~Tayaa~r~Vl~~~~~lGi 163 (351)
T COG5322 87 SRPKAATRRVLNAMALAQKLGADVTGLGGFSSIV---GNLGQNVQVRNVELTFTRFTTGNSHTAYAACRQVLKHFAQLGI 163 (351)
T ss_pred hCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhh---ccccccccccceEEEEEecccCCccchHHHHHHHHHHHHHhCc
Confidence 3456677777788889999999999998642110 10011111 444122368889999999998877633
Q ss_pred --CCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 462 --TTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 462 --~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
.-.+|=.+|++ .-+|.+||..|.-++-+
T Consensus 164 dlsqatvaivGa~--G~Ia~~Iar~la~~~~~ 193 (351)
T COG5322 164 DLSQATVAIVGAT--GDIASAIARWLAPKVGV 193 (351)
T ss_pred CHHHCeEEEecCC--chHHHHHHHHhccccCE
Confidence 22378999999 69999999999877544
No 15
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.45 E-value=0.63 Score=48.43 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=36.1
Q ss_pred hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeeeC
Q 011017 450 LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSFS 495 (495)
Q Consensus 450 l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~~ 495 (495)
.+|-.+.++++-.-+-+..||++ |-+|+++|..|++||.+|++.
T Consensus 22 ~~~~~~~~~~~~~~~~~vVTGan--sGIG~eta~~La~~Ga~Vv~~ 65 (314)
T KOG1208|consen 22 TTALEVTHGIDLSGKVALVTGAT--SGIGFETARELALRGAHVVLA 65 (314)
T ss_pred eecceeeccccCCCcEEEEECCC--CchHHHHHHHHHhCCCEEEEE
Confidence 33444666776666889999999 699999999999999999873
No 16
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=84.25 E-value=0.9 Score=47.30 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=26.3
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=...||+| +++|+|.|.-||+||.+|.+
T Consensus 50 ~WAVVTGaT--DGIGKayA~eLAkrG~nvvL 78 (312)
T KOG1014|consen 50 SWAVVTGAT--DGIGKAYARELAKRGFNVVL 78 (312)
T ss_pred CEEEEECCC--CcchHHHHHHHHHcCCEEEE
Confidence 457899999 69999999999999999876
No 17
>PRK07985 oxidoreductase; Provisional
Probab=83.71 E-value=1.2 Score=44.95 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=26.9
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.|++||++ +-+|+++|..|+++|.+|++
T Consensus 50 k~vlITGas--~gIG~aia~~L~~~G~~Vi~ 78 (294)
T PRK07985 50 RKALVTGGD--SGIGRAAAIAYAREGADVAI 78 (294)
T ss_pred CEEEEECCC--CcHHHHHHHHHHHCCCEEEE
Confidence 679999999 68999999999999999976
No 18
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.59 E-value=1.4 Score=45.29 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=26.7
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+-|++||++ +-+|+++|..|+++|.+|++
T Consensus 54 ~~~lITGAs--~GIG~alA~~La~~G~~Vil 82 (320)
T PLN02780 54 SWALVTGPT--DGIGKGFAFQLARKGLNLVL 82 (320)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCCEEE
Confidence 578999999 69999999999999999875
No 19
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.54 E-value=2 Score=43.33 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=49.8
Q ss_pred ccccccceeeeccCCCCcceEEecCCchh----hHhhhhcCCCCCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 423 EELNRNGEIYLERQPNKLKIKVVDGSSLA----AAVVVNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 423 ~~ln~~g~~~~~~~p~~l~~~vv~g~~l~----~a~v~~~ip~~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|..+-+-.+|.-+.-.+...++.... ++.....++ .-+.++|.|....+| |+-|||..||++|++|++
T Consensus 62 ~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f 138 (254)
T COG1484 62 ERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF 138 (254)
T ss_pred HHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE
Confidence 34444444444455446666666665554 334455778 777889999876567 999999999999999986
No 20
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.20 E-value=1.6 Score=44.15 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.8
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.|++||++ +-+|+++|..|+++|.+|.+
T Consensus 41 k~vlItGas--ggIG~~la~~La~~G~~Vi~ 69 (293)
T PRK05866 41 KRILLTGAS--SGIGEAAAEQFARRGATVVA 69 (293)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCEEEE
Confidence 679999999 69999999999999999875
No 21
>PRK06128 oxidoreductase; Provisional
Probab=81.93 E-value=1.5 Score=44.09 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=26.9
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.|++||++ +=+|+++|..|+++|.+|++
T Consensus 56 k~vlITGas--~gIG~~~a~~l~~~G~~V~i 84 (300)
T PRK06128 56 RKALITGAD--SGIGRATAIAFAREGADIAL 84 (300)
T ss_pred CEEEEecCC--CcHHHHHHHHHHHcCCEEEE
Confidence 689999999 68999999999999999975
No 22
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=79.92 E-value=2 Score=46.27 Aligned_cols=95 Identities=23% Similarity=0.379 Sum_probs=56.4
Q ss_pred eeEEeeccCc-eeccchhhhhhHHHHHHHHHHHHhcCCeEEEe--ccccccccccccceeeeccCCCCcceEEecCCchh
Q 011017 375 QTWVVPRYIV-QYNLPWRREAINSLIEEAILEADAKGVKVISL--GLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLA 451 (495)
Q Consensus 375 ~~w~~pr~~~-~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl--~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~ 451 (495)
..-++|.-+- -|..|. -.+-+..-.+.|+.|+.= |.|-.+|. |-| |-| +. +.+
T Consensus 118 pvvi~Pamn~~m~~~p~--------~~~Nl~~L~~~G~~ii~P~~g~la~~~~--g~g-----r~~-~~-------~~I- 173 (399)
T PRK05579 118 PVLVAPAMNTQMWENPA--------TQRNLATLRSRGVEIIGPASGRLACGDV--GPG-----RMA-EP-------EEI- 173 (399)
T ss_pred CEEEEeCCChhHcCCHH--------HHHHHHHHHHCCCEEECCCCccccCCCc--CCC-----CCC-CH-------HHH-
Confidence 5556665544 233343 344444445579999854 44444443 333 345 21 222
Q ss_pred hHhhhhcC-CC--CCceEEEecc---------------CCchhHHHHHHHHHhhcCcEeee
Q 011017 452 AAVVVNSL-PK--TTAHVLLRGT---------------VTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 452 ~a~v~~~i-p~--~~~~v~l~g~---------------~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
...|.+.+ |+ .-+.|+.||. .| +|+|+|+|.+|.++|.+|.+
T Consensus 174 ~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SS-G~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 174 VAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSS-GKMGYALARAAARRGADVTL 233 (399)
T ss_pred HHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCc-chHHHHHHHHHHHCCCEEEE
Confidence 22333333 23 3468999998 34 79999999999999999975
No 23
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=79.78 E-value=2 Score=46.29 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=27.2
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|.|++||++ +-+|+|+|..|+++|.+|.+
T Consensus 178 gK~VLITGAS--gGIG~aLA~~La~~G~~Vi~ 207 (406)
T PRK07424 178 GKTVAVTGAS--GTLGQALLKELHQQGAKVVA 207 (406)
T ss_pred CCEEEEeCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 3689999999 69999999999999999874
No 24
>PLN02686 cinnamoyl-CoA reductase
Probab=77.08 E-value=3.2 Score=43.46 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..-|.|++||++ +-+|++++..|.++|.+|.+
T Consensus 51 ~~~k~VLVTGat--GfIG~~lv~~L~~~G~~V~~ 82 (367)
T PLN02686 51 AEARLVCVTGGV--SFLGLAIVDRLLRHGYSVRI 82 (367)
T ss_pred CCCCEEEEECCc--hHHHHHHHHHHHHCCCEEEE
Confidence 345789999999 69999999999999999864
No 25
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.75 E-value=3.4 Score=43.86 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=30.9
Q ss_pred hhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 456 ~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..+.+..-+.|++||++ +.+|++++..|.++|.+|..
T Consensus 53 ~~~~~~~~~kVLVtGat--G~IG~~l~~~Ll~~G~~V~~ 89 (390)
T PLN02657 53 FRSKEPKDVTVLVVGAT--GYIGKFVVRELVRRGYNVVA 89 (390)
T ss_pred ccccCCCCCEEEEECCC--cHHHHHHHHHHHHCCCEEEE
Confidence 34455556689999999 69999999999999999864
No 26
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=74.95 E-value=4.5 Score=43.63 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=33.3
Q ss_pred hhHhhhhcC---------CCCCceEEEeccCCchhHHHH--HHHHHhhcCcEeee
Q 011017 451 AAAVVVNSL---------PKTTAHVLLRGTVTANKVANA--VASSLCQMGIKVSF 494 (495)
Q Consensus 451 ~~a~v~~~i---------p~~~~~v~l~g~~~~~k~~~a--~a~~lc~~~~~v~~ 494 (495)
.++.|.|+| .++-|.++.||++ +.+|.| ||.+| +.|..|++
T Consensus 20 c~~~v~~qi~~~~~~~~~~~ggK~aLVTGaS--sGIGlA~~IA~al-~~GA~Vi~ 71 (398)
T PRK13656 20 CEANVKEQIEYVKAQGPIANGPKKVLVIGAS--SGYGLASRIAAAF-GAGADTLG 71 (398)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCEEEEECCC--chHhHHHHHHHHH-HcCCeEEE
Confidence 456677766 3567899999999 699999 99999 99998754
No 27
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=74.23 E-value=3.9 Score=44.24 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=25.9
Q ss_pred eEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 465 HVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 465 ~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.|++||++ +-||+.++.+|.++|.+|..
T Consensus 122 kILVTGat--GFIGs~Lv~~Ll~~G~~V~~ 149 (436)
T PLN02166 122 RIVVTGGA--GFVGSHLVDKLIGRGDEVIV 149 (436)
T ss_pred EEEEECCc--cHHHHHHHHHHHHCCCEEEE
Confidence 69999999 69999999999999999874
No 28
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=72.57 E-value=33 Score=30.99 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEecccccccc-------------ccccceeeeccC-CCCcceEEecCCchh------
Q 011017 392 REAINSLIEEAILEADAKGVKVISLGLLNQGEE-------------LNRNGEIYLERQ-PNKLKIKVVDGSSLA------ 451 (495)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~-------------ln~~g~~~~~~~-p~~l~~~vv~g~~l~------ 451 (495)
.+.+=+.|.+.+..|.+.|..|+=.=-..+.+. .+..|.-++..- | .-.-.+++-++--
T Consensus 22 ~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~-~~~~~~i~K~~~saf~~t~ 100 (161)
T cd00431 22 ADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAELVPELAP-LPDDLVIEKTRYSAFYGTD 100 (161)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhhcchhhCC-CCCCEEEecCCcCCccCCC
Confidence 344444555666678889999885544444322 112233333321 2 1111233222111
Q ss_pred hHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 452 AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 452 ~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.+. +.++|+|+|-.+ +---.+.|+.+.++|.+|.+
T Consensus 101 l~~~L~~~--~i~~vil~G~~t-~~CV~~T~~~a~~~G~~v~v 140 (161)
T cd00431 101 LDELLRER--GIDTLVVCGIAT-DICVLATARDALDLGYRVIV 140 (161)
T ss_pred HHHHHHHC--CCCEEEEEecCc-ChhHHHHHHHHHHCCCEEEE
Confidence 12333333 889999999987 56668899999999999986
No 29
>PRK07340 ornithine cyclodeaminase; Validated
Probab=72.38 E-value=13 Score=38.36 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=58.4
Q ss_pred hcCCeEEEeccccccccccc-cceeeeccCCCCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhHH
Q 011017 408 AKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKVA 478 (495)
Q Consensus 408 ~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~~ 478 (495)
..|+|+++.--=|..+.|.. .|.+.+.---+..-.=++||+.||+ |+-.+-+ +++.+.|.+.|+. ..|
T Consensus 61 ~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaA~sala~~~La~~~~~~v~IiGaG---~qa 137 (304)
T PRK07340 61 LAITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTGRRTAAVSLLAARTLAPAPPGDLLLIGTG---VQA 137 (304)
T ss_pred ccEEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhHHHHHHHHHHHHHHHHhCCCCCCEEEEECCc---HHH
Confidence 46999998765565554433 4454444333466688999999974 3444555 6799999999997 999
Q ss_pred HHHHHHHhh-cCcE
Q 011017 479 NAVASSLCQ-MGIK 491 (495)
Q Consensus 479 ~a~a~~lc~-~~~~ 491 (495)
++.+.++|+ ++++
T Consensus 138 ~~~~~al~~~~~~~ 151 (304)
T PRK07340 138 RAHLEAFAAGLPVR 151 (304)
T ss_pred HHHHHHHHHhCCCC
Confidence 999999996 6654
No 30
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=71.94 E-value=34 Score=33.27 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=15.7
Q ss_pred cccccCChhhhHHHhhcCCCCc
Q 011017 239 LKFLMYTPSYHSLHHTQFRTNY 260 (495)
Q Consensus 239 L~~li~tp~~H~lHH~~~~~NY 260 (495)
++++...-.+|..||...+..+
T Consensus 167 ~~~l~~~~nyH~~HHL~P~IP~ 188 (207)
T cd03514 167 LNPLIMGQNYHLVHHLWPSIPW 188 (207)
T ss_pred HheeecCCchhHHHhCCCCCch
Confidence 3555556679999999866544
No 31
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.94 E-value=5 Score=40.35 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=26.3
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.|++||++ +=||+++|..|+++|.+|.+
T Consensus 47 k~iLItGas--ggIG~~la~~l~~~G~~V~l 75 (290)
T PRK06701 47 KVALITGGD--SGIGRAVAVLFAKEGADIAI 75 (290)
T ss_pred CEEEEeCCC--cHHHHHHHHHHHHCCCEEEE
Confidence 579999999 57999999999999999875
No 32
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.79 E-value=4.6 Score=43.67 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=26.6
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.|++||++ +=||+++|.+|.++|.+|.+
T Consensus 48 k~VLVTGat--GfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 48 KKVMVIGGD--GYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CEEEEECCC--cHHHHHHHHHHHHCCCeEEE
Confidence 579999999 68999999999999999875
No 33
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=70.26 E-value=7.5 Score=42.85 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=36.4
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.||+|+.-++...++ -| .+.|++||++ ++|+.|+.+.+++.++|++
T Consensus 167 ~v~vv~g~~~~~~~l~~-~~--~d~i~FTGS~---~vG~~V~~~aa~~l~pv~l 214 (493)
T PTZ00381 167 YVRVIEGGVEVTTELLK-EP--FDHIFFTGSP---RVGKLVMQAAAENLTPCTL 214 (493)
T ss_pred EEEEecCCHHHHHHHHh-CC--CCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 35667775444444554 34 8899999998 8999999999998888865
No 34
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.25 E-value=10 Score=40.28 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred eccchhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHh----------h
Q 011017 386 YNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAV----------V 455 (495)
Q Consensus 386 y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~----------v 455 (495)
+..+....-+++-|.+.-++=.+.|+.|+++- ++|+.+ .| +-..++--|+.|..+. .
T Consensus 157 ~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~---------r~~~~~---~p-~~~~~l~~gD~l~v~g~~~~l~~~~~~ 223 (453)
T PRK09496 157 VKVYEGSPLVGKPLSDLREHFPDIDVRVVAIF---------RGGRLI---IP-RGDTVIEAGDEVYFIGAREHIRAVMSE 223 (453)
T ss_pred EEeCCCCccCCcCHHHhhhhcCCCceEEEEEE---------ECCEEE---cC-CCCcEecCCCEEEEEeCHHHHHHHHHH
Confidence 34444444555555444322135799998773 234432 35 5566677777765432 2
Q ss_pred hhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 456 ~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+.+...+.|.+.|.. ++|+.+|..|-++|++|++
T Consensus 224 ~~~~~~~~~~iiIiG~G---~~g~~l~~~L~~~~~~v~v 259 (453)
T PRK09496 224 FGRLEKPVKRVMIVGGG---NIGYYLAKLLEKEGYSVKL 259 (453)
T ss_pred hCccCCCCCEEEEECCC---HHHHHHHHHHHhCCCeEEE
Confidence 33334456899999996 9999999999999999875
No 35
>PRK06484 short chain dehydrogenase; Validated
Probab=68.13 E-value=6.3 Score=42.66 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.-|.++.||++ +-+|+++|..|+++|.+|++
T Consensus 268 ~~k~~lItGas--~gIG~~~a~~l~~~G~~V~~ 298 (520)
T PRK06484 268 SPRVVAITGGA--RGIGRAVADRFAAAGDRLLI 298 (520)
T ss_pred CCCEEEEECCC--cHHHHHHHHHHHHCCCEEEE
Confidence 44789999999 68999999999999999975
No 36
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=66.62 E-value=33 Score=31.37 Aligned_cols=100 Identities=24% Similarity=0.254 Sum_probs=61.1
Q ss_pred chhhhhhHHHHHHHHHHHHhcCCeEEEeccccc---------------cccccccceeeec-cCCCCcceEEec------
Q 011017 389 PWRREAINSLIEEAILEADAKGVKVISLGLLNQ---------------GEELNRNGEIYLE-RQPNKLKIKVVD------ 446 (495)
Q Consensus 389 ~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~---------------~~~ln~~g~~~~~-~~p~~l~~~vv~------ 446 (495)
+.+.+.+-+-|.+.+..|.+.|+.|+----.++ .-.....|.-++. -.| ...-.+++
T Consensus 19 ~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~-~~~~~vi~K~~~sa 97 (174)
T PF00857_consen 19 PPNAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSPGAELVPELAP-QPGDPVIEKNRYSA 97 (174)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSGGGSBHGGGHC-HTTSEEEEESSSST
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCCccceeeEeec-ccccceEEeecccc
Confidence 445566667778888888999999987776666 0011112222222 112 11222222
Q ss_pred --CCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 447 --GSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 447 --g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|+.|. ..|++ +++++|.++|-.+ +=-=.+.|..+.++|.+|.+
T Consensus 98 f~~t~L~--~~L~~--~gi~~vil~G~~t-~~CV~~Ta~~a~~~g~~v~v 142 (174)
T PF00857_consen 98 FFGTDLD--EILRK--RGIDTVILCGVAT-DVCVLATARDAFDRGYRVIV 142 (174)
T ss_dssp TTTSSHH--HHHHH--TTESEEEEEEEST-TTHHHHHHHHHHHTT-EEEE
T ss_pred ccccccc--ccccc--cccceEEEccccc-CcEEehhHHHHHHCCCEEEE
Confidence 22222 23554 6889999999987 45458999999999999986
No 37
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.47 E-value=9.5 Score=36.20 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=33.1
Q ss_pred hhhHhhhhcCCC--CCceEEEeccCCchh-HHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVNSLPK--TTAHVLLRGTVTANK-VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~~ip~--~~~~v~l~g~~~~~k-~~~a~a~~lc~~~~~v~~ 494 (495)
.++.-.+.+++. +-++|++.|+. + +|..+|.+|+++|++|.+
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G---~~~G~~~a~~L~~~g~~V~v 73 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRS---NIVGKPLAALLLNRNATVTV 73 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCc---HHHHHHHHHHHhhCCCEEEE
Confidence 344445677764 55899999997 7 599999999999998865
No 38
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=66.20 E-value=6.6 Score=42.19 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCceEEEeccC--------------CchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTV--------------TANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~--------------~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.-+.|+.||.. |-+|+|++||.+|.++|.+|.+
T Consensus 184 ~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~ 230 (390)
T TIGR00521 184 EGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTL 230 (390)
T ss_pred CCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEE
Confidence 34678888773 2259999999999999999976
No 39
>PLN02206 UDP-glucuronate decarboxylase
Probab=66.17 E-value=7.3 Score=42.25 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=26.6
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.||+||++ +=||+.++.+|.++|.+|..
T Consensus 120 ~kILVTGat--GfIGs~Lv~~Ll~~G~~V~~ 148 (442)
T PLN02206 120 LRVVVTGGA--GFVGSHLVDRLMARGDSVIV 148 (442)
T ss_pred CEEEEECcc--cHHHHHHHHHHHHCcCEEEE
Confidence 679999999 68999999999999999874
No 40
>PRK07201 short chain dehydrogenase; Provisional
Probab=66.11 E-value=6.4 Score=43.91 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=27.2
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|.+++||++ +-+|+++|..|+++|.+|.+
T Consensus 371 ~k~vlItGas--~giG~~la~~l~~~G~~V~~ 400 (657)
T PRK07201 371 GKVVLITGAS--SGIGRATAIKVAEAGATVFL 400 (657)
T ss_pred CCEEEEeCCC--CHHHHHHHHHHHHCCCEEEE
Confidence 3679999999 69999999999999999875
No 41
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=65.97 E-value=10 Score=41.79 Aligned_cols=48 Identities=13% Similarity=0.325 Sum_probs=36.6
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.||+|..-+.+..+. ++++.|++||++ ++|+.|+....++..+|++
T Consensus 170 vv~vv~G~~~~~~~l~~---~~vd~V~FTGS~---~~G~~I~~~aa~~l~~v~L 217 (484)
T PLN02174 170 AVRVVEGAVTETTALLE---QKWDKIFYTGSS---KIGRVIMAAAAKHLTPVVL 217 (484)
T ss_pred EEEEEECChHHHHHHhc---ccCCEEEEECCh---HHHHHHHHHHHhcCCcEEE
Confidence 46678775433444443 578999999998 8999999998888888875
No 42
>PRK11440 putative hydrolase; Provisional
Probab=65.42 E-value=50 Score=31.16 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=28.8
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.|+++++++|-.+ +=-=.+.|..+.++|.+|.+
T Consensus 119 ~gi~~lii~Gv~T-~~CV~~Ta~~A~~~gy~v~v 151 (188)
T PRK11440 119 RGIDTIVLCGIST-NIGVESTARNAWELGFNLVI 151 (188)
T ss_pred CCCCEEEEeeech-hHHHHHHHHHHHHCCCEEEE
Confidence 4889999999997 55668889999999999986
No 43
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.48 E-value=21 Score=38.09 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=53.6
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeecc----CCCCcceEEecCCchhhHhhhhcCCCCCceE
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLER----QPNKLKIKVVDGSSLAAAVVVNSLPKTTAHV 466 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~----~p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v 466 (495)
.+.++..+++..-.|- +.|++|-.+-.-.-.++-....-.|.-. +-++-.++ ++|...+... =-+-|..-+.|
T Consensus 137 akaal~gl~rsla~E~-~~gi~v~~i~~~~~~~~~~~~~~~~l~s~~~a~~~g~~i~-~~~~~~~~~~-~~~~~~~g~~v 213 (450)
T PRK08261 137 AQRALEGFTRSLGKEL-RRGATAQLVYVAPGAEAGLESTLRFFLSPRSAYVSGQVVR-VGAADAAPPA-DWDRPLAGKVA 213 (450)
T ss_pred HHHHHHHHHHHHHHHh-hcCCEEEEEecCCCCHHHHHHHHHHhcCCccCCccCcEEE-ecCCcccCCC-CcccCCCCCEE
Confidence 5667777777776677 6788874442211111111111112221 11122233 3332211100 00112234679
Q ss_pred EEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 467 LLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 467 ~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++||++ +=+|+++|..|+++|.+|++
T Consensus 214 lItGas--ggIG~~la~~l~~~Ga~vi~ 239 (450)
T PRK08261 214 LVTGAA--RGIGAAIAEVLARDGAHVVC 239 (450)
T ss_pred EEecCC--CHHHHHHHHHHHHCCCEEEE
Confidence 999999 58999999999999999975
No 44
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.35 E-value=7.6 Score=40.42 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=25.1
Q ss_pred eEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 465 HVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 465 ~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+.||+. |=+||++|+-+.|||-++++
T Consensus 40 ~vLITGgg--~GlGr~ialefa~rg~~~vl 67 (300)
T KOG1201|consen 40 IVLITGGG--SGLGRLIALEFAKRGAKLVL 67 (300)
T ss_pred EEEEeCCC--chHHHHHHHHHHHhCCeEEE
Confidence 68999999 68999999999999998754
No 45
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=64.19 E-value=7.2 Score=44.60 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=61.9
Q ss_pred ccCcccceeEEeeccCc-eeccchhhhhhHHHHHH----HHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcce
Q 011017 368 TLDKLKLQTWVVPRYIV-QYNLPWRREAINSLIEE----AILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKI 442 (495)
Q Consensus 368 ~~~~~~~~~w~~pr~~~-~y~~~~~~~~in~~ie~----ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~ 442 (495)
.+++-+-..-.||--|. -+.-..+...|+..|-+ +|++|+..| +.-.|.+.|...- -|.+...-+|+
T Consensus 333 ~~~~~~p~~~~~~~~g~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~---eyw~~e~~kl~- 404 (676)
T TIGR02632 333 TMRDPNPRVLLIPGVGMISFGKDKETARVAREFYVNAINVMRGAEAVS----EYVSLPEQEAFDI---EYWPLEEAKLR- 404 (676)
T ss_pred cccCCCCeEEEEcCcceEEecCCHHHhhhhHHHHHHHHHHHhhhhccc----ceecCchhhccch---hhhhhhHHhhc-
Confidence 34455557788898887 55555555667755543 355555444 3334555554433 23321110111
Q ss_pred EEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 443 KVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 443 ~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.. ...+-.-|-|++||++ +-+|+++|..|+++|.+|++
T Consensus 405 ~~~-----------~~~~l~gkvvLVTGas--ggIG~aiA~~La~~Ga~Vvi 443 (676)
T TIGR02632 405 RMP-----------KEKTLARRVAFVTGGA--GGIGRETARRLAAEGAHVVL 443 (676)
T ss_pred cCC-----------CCcCCCCCEEEEeCCC--cHHHHHHHHHHHhCCCEEEE
Confidence 100 0111134679999999 69999999999999999975
No 46
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=63.47 E-value=9.9 Score=38.46 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=32.6
Q ss_pred cCCchhhHhhh-hcCCCCCceEEEeccCCchhHHHHHHHHHhhcC-cEeee
Q 011017 446 DGSSLAAAVVV-NSLPKTTAHVLLRGTVTANKVANAVASSLCQMG-IKVSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~-~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~-~~v~~ 494 (495)
||....++.-- ..+...-+.|++.|+. .+|||+|.+|+++| .+|.+
T Consensus 105 D~~G~~~~l~~~~~~~~~~k~vlVlGaG---g~a~ai~~aL~~~g~~~V~v 152 (278)
T PRK00258 105 DGIGFVRALEERLGVDLKGKRILILGAG---GAARAVILPLLDLGVAEITI 152 (278)
T ss_pred cHHHHHHHHHhccCCCCCCCEEEEEcCc---HHHHHHHHHHHHcCCCEEEE
Confidence 55555555542 1233445789999985 89999999999999 56664
No 47
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.16 E-value=8.9 Score=39.17 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=24.8
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcE-eee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIK-VSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~-v~~ 494 (495)
.-|.|+++|+. -.|||||.+|.+.|++ |.+
T Consensus 125 ~~k~vlI~GAG---GagrAia~~La~~G~~~V~I 155 (289)
T PRK12548 125 KGKKLTVIGAG---GAATAIQVQCALDGAKEITI 155 (289)
T ss_pred CCCEEEEECCc---HHHHHHHHHHHHCCCCEEEE
Confidence 34789999995 7899999999999986 654
No 48
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=62.68 E-value=14 Score=39.80 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=36.1
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-++..+++. .++-|.+||++ ++|++|+....++.++|.+
T Consensus 179 ~~vv~g~~~~~~~l~~~---~vd~V~ftGs~---~~g~~i~~~aa~~~~~~~l 225 (453)
T cd07099 179 LQVVTGDGATGAALIDA---GVDKVAFTGSV---ATGRKVMAAAAERLIPVVL 225 (453)
T ss_pred EEEEeCCchHHHHHhcC---CCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 56677655444455543 48999999998 8999999999998888875
No 49
>PLN02203 aldehyde dehydrogenase
Probab=61.97 E-value=13 Score=40.90 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=38.1
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|..-++..++.. | ++.|.+||++ .+|++|+....++..+|++
T Consensus 166 vv~vv~g~~~~~~~l~~~-~--vd~v~fTGS~---~~G~~v~~~aa~~l~~v~l 213 (484)
T PLN02203 166 AVKVIEGGPAVGEQLLQH-K--WDKIFFTGSP---RVGRIIMTAAAKHLTPVAL 213 (484)
T ss_pred EEEEEeCCHHHHHHHHhC-C--CCEEEEECCH---HHHHHHHHHHHhcCCCEEE
Confidence 367888765566666655 4 8899999998 8999999998888888865
No 50
>PRK06141 ornithine cyclodeaminase; Validated
Probab=61.65 E-value=30 Score=35.78 Aligned_cols=85 Identities=25% Similarity=0.267 Sum_probs=58.0
Q ss_pred HhcCCeEEEecccccccccc-ccceeeeccCCCCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhH
Q 011017 407 DAKGVKVISLGLLNQGEELN-RNGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln-~~g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~ 477 (495)
+-.|+|+++.--=|....|- -.|.+.+.---+..-.=++||+.||+ |+..+-+ +++.+.|.+.|+. ..
T Consensus 60 ~~~g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~~RTaa~sala~~~La~~~~~~v~iiG~G---~~ 136 (314)
T PRK06141 60 RYIGVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTARRTAAASALAASYLARKDASRLLVVGTG---RL 136 (314)
T ss_pred CeeEEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhcchhHHHHHHHHHHhCCCCCceEEEECCc---HH
Confidence 34699999976666544442 23555554332366677899999974 2333334 6789999999986 99
Q ss_pred HHHHHHHHhh-cCc-Eeee
Q 011017 478 ANAVASSLCQ-MGI-KVSF 494 (495)
Q Consensus 478 ~~a~a~~lc~-~~~-~v~~ 494 (495)
|++++.++|. +++ +|.+
T Consensus 137 a~~~~~al~~~~~~~~V~V 155 (314)
T PRK06141 137 ASLLALAHASVRPIKQVRV 155 (314)
T ss_pred HHHHHHHHHhcCCCCEEEE
Confidence 9999998887 663 3443
No 51
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=60.10 E-value=38 Score=28.76 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=45.6
Q ss_pred cceeEeeccccCcccceeEEeeccCceeccchhhhhhHHHHHHHHHHHHhcCCeEEEecccccc
Q 011017 359 GRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQG 422 (495)
Q Consensus 359 ~~~f~~~~~~~~~~~~~~w~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~ 422 (495)
|+..+.+.+.+.-...=.-+.|+|.-+ .-+.+.+.+.+-+++++..|+++++|.|.+=++.-+
T Consensus 43 G~~~~t~~~~l~~~~Iih~v~P~~~~~-~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G 105 (118)
T PF01661_consen 43 GEVIVTPGGNLPCKYIIHAVGPTYNSP-GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTG 105 (118)
T ss_dssp TSEEEEEETTSSSSEEEEEEEEETTTS-TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSS
T ss_pred CCeeeecCCCccccceEEEecceeccc-cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCC
Confidence 456666666665222233355887655 556788899999999999999999999988776543
No 52
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=59.72 E-value=18 Score=39.10 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=36.9
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-..+-.|-+-| +++-|++||.+ ++|+.|+....++.++|++
T Consensus 173 ~~~~~~v~g~~~~~~~~L~~~~-~vd~v~ftGs~---~~g~~v~~~aa~~l~~~~l 224 (457)
T cd07108 173 AGVLNVITGYGEECGAALVDHP-DVDKVTFTGST---EVGKIIYRAAADRLIPVSL 224 (457)
T ss_pred cCcEEEEeCCchHHHHHHhcCC-CcCEEEEECcH---HHHHHHHHHHhccCCeEEE
Confidence 3347778875443333333333 78899999988 8999999998888888764
No 53
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=59.32 E-value=27 Score=36.70 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=16.7
Q ss_pred hhhhhcchhhHHHHHHHHHHHH
Q 011017 89 VDRERNWDDQIVFNGLIFYIVR 110 (495)
Q Consensus 89 vdrE~~~~n~iil~~ll~~~~~ 110 (495)
.+||+.|.|.+++.++.+...+
T Consensus 34 ~~~~~~w~nv~~~~~l~~~a~y 55 (321)
T KOG1600|consen 34 WKRELVWRNVVLFSALHIVALY 55 (321)
T ss_pred hhcchhhhhhHHHHHHHHHHHH
Confidence 5799999998887777655444
No 54
>PLN00016 RNA-binding protein; Provisional
Probab=58.96 E-value=9.7 Score=39.81 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCCceEEEe----ccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLR----GTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~----g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+.+.|++| |++ +.+|+.++..|.++|.+|.+
T Consensus 50 ~~~~~VLVt~~~~Gat--G~iG~~lv~~L~~~G~~V~~ 85 (378)
T PLN00016 50 VEKKKVLIVNTNSGGH--AFIGFYLAKELVKAGHEVTL 85 (378)
T ss_pred cccceEEEEeccCCCc--eeEhHHHHHHHHHCCCEEEE
Confidence 345789999 999 69999999999999999874
No 55
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=58.91 E-value=34 Score=32.47 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=11.5
Q ss_pred hhhhccccccccccc
Q 011017 154 YLYSRYHSHHHSSVV 168 (495)
Q Consensus 154 ~Ly~riHk~HHss~~ 168 (495)
..|++.|..||...+
T Consensus 71 ~~~r~~H~~HH~~~~ 85 (175)
T cd03510 71 AAYRRSHLKHHRHLG 85 (175)
T ss_pred HHHHHHHHHHhCccC
Confidence 357788999999754
No 56
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=57.32 E-value=18 Score=39.10 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|+|+.-+.+.++. | +++.|.+||++ ++|+.|+....++..+|++
T Consensus 159 ~~vv~g~~~~~~~l~~--~-~vd~V~fTGs~---~~g~~i~~~a~~~~~~~~l 205 (443)
T cd07132 159 YPVVLGGVEETTELLK--Q-RFDYIFYTGST---SVGKIVMQAAAKHLTPVTL 205 (443)
T ss_pred EEEEeCCHHHHHHHHh--C-CCCEEEEECCh---HHHHHHHHHHHhhCCceEE
Confidence 4467665434444554 4 79999999998 8999999988877778764
No 57
>PRK08939 primosomal protein DnaI; Reviewed
Probab=56.91 E-value=14 Score=38.42 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=28.1
Q ss_pred CCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
..+-++|.|.+..+| ++.|||..||++|++|.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~ 189 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTL 189 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 346789999887778 999999999999999874
No 58
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=56.82 E-value=14 Score=35.03 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=23.9
Q ss_pred CceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
-+-+++.|.+..+| ++.|||..+|++|.+|.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f 80 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLF 80 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeE
Confidence 35688888876667 999999999999999975
No 59
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=56.05 E-value=38 Score=31.06 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeec--c-CCCCcc-----eEEecCCchhhHhhhhcCCCCCc
Q 011017 393 EAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLE--R-QPNKLK-----IKVVDGSSLAAAVVVNSLPKTTA 464 (495)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~--~-~p~~l~-----~~vv~g~~l~~a~v~~~ip~~~~ 464 (495)
+.+=.-|.+.+..|.+.|+.|+-.. +.+ .++|++.=+ . .|++.- .--..|+.|.. .|++ .|++
T Consensus 19 ~~~~~~i~~l~~~ar~~g~pVi~~~---~~~--~~~g~~~~~l~~~~~~~~vi~K~~~saf~~t~L~~--~L~~--~gi~ 89 (157)
T cd01012 19 DELINNTVKLAKAAKLLDVPVILTE---QYP--KGLGPTVPELREVFPDAPVIEKTSFSCWEDEAFRK--ALKA--TGRK 89 (157)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEe---eCC--CCCCCchHHHHhhCCCCCceecccccCcCCHHHHH--HHHh--cCCC
Confidence 3344446666677889999999652 111 123333211 1 231110 11122333322 3332 4889
Q ss_pred eEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 465 HVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 465 ~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++.++|-.+ +=-=.+.|..+.++|.+|.+
T Consensus 90 ~lii~G~~T-~~CV~~Ta~~a~~~g~~v~v 118 (157)
T cd01012 90 QVVLAGLET-HVCVLQTALDLLEEGYEVFV 118 (157)
T ss_pred EEEEEEeec-cHHHHHHHHHHHHCCCEEEE
Confidence 999999987 55568889999999999986
No 60
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=56.04 E-value=52 Score=33.74 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcCCC--CCceEEEeccC
Q 011017 395 INSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPK--TTAHVLLRGTV 472 (495)
Q Consensus 395 in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~--~~~~v~l~g~~ 472 (495)
.|..+++ .|+++|++|..+--.+.-.. -+.-| + ...+.+..++..+. .-+.|.+.|..
T Consensus 101 ~~~~l~~---~a~~~gi~v~~~~~~~~va~--------~n~~~------~---Ae~ai~~al~~~~~~l~gk~v~IiG~G 160 (287)
T TIGR02853 101 SNPYLEQ---LAADAGVKLIELFERDDVAI--------YNSIP------T---AEGAIMMAIEHTDFTIHGSNVMVLGFG 160 (287)
T ss_pred CCHHHHH---HHHHCCCeEEEEEeccceEE--------EccHh------H---HHHHHHHHHHhcCCCCCCCEEEEEcCh
Confidence 5666665 68889999997765321100 01112 0 00111222333332 33689999997
Q ss_pred CchhHHHHHHHHHhhcCcEeee
Q 011017 473 TANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 473 ~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+|+++|..|...|.+|.+
T Consensus 161 ---~iG~avA~~L~~~G~~V~v 179 (287)
T TIGR02853 161 ---RTGMTIARTFSALGARVFV 179 (287)
T ss_pred ---HHHHHHHHHHHHCCCEEEE
Confidence 8999999999999999876
No 61
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=55.86 E-value=15 Score=36.81 Aligned_cols=46 Identities=26% Similarity=0.238 Sum_probs=32.8
Q ss_pred cCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
||....++.--+..+..-+.|+++|+. -+|+|+|.+|+++|.+|.+
T Consensus 100 D~~G~~~~l~~~~~~~~~k~vliiGaG---g~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 100 DGIGLVSDLERLIPLRPNQRVLIIGAG---GAARAVALPLLKADCNVII 145 (270)
T ss_pred CHHHHHHHHHhcCCCccCCEEEEEcCc---HHHHHHHHHHHHCCCEEEE
Confidence 555555552211123345789999986 7999999999999998865
No 62
>PRK08618 ornithine cyclodeaminase; Validated
Probab=55.54 E-value=39 Score=35.02 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=57.0
Q ss_pred HhcCCeEEEecccccccccc-ccceeeeccCCCCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhH
Q 011017 407 DAKGVKVISLGLLNQGEELN-RNGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln-~~g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~ 477 (495)
+-.|+|+++.--=|..+.|- -.|.+.+.--.+..-+=++||+.||+ |+...-+ +++.+.|.+.|+. ..
T Consensus 62 ~~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~~RTaa~sala~~~la~~~~~~v~iiGaG---~~ 138 (325)
T PRK08618 62 EALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQIRTGALSGVATKYLAREDAKTLCLIGTG---GQ 138 (325)
T ss_pred CeEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhhhhHHHHHHHHHHHhcCCCCcEEEEECCc---HH
Confidence 34699999875555443332 33555555333466688999999974 3334556 6799999999997 89
Q ss_pred HHHHHHHHhh-cCcE
Q 011017 478 ANAVASSLCQ-MGIK 491 (495)
Q Consensus 478 ~~a~a~~lc~-~~~~ 491 (495)
|++++.++|+ ++++
T Consensus 139 a~~~~~al~~~~~~~ 153 (325)
T PRK08618 139 AKGQLEAVLAVRDIE 153 (325)
T ss_pred HHHHHHHHHhcCCcc
Confidence 9999998874 5654
No 63
>PRK12377 putative replication protein; Provisional
Probab=55.19 E-value=16 Score=36.91 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.4
Q ss_pred hhhcCCCCCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 455 VVNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 455 v~~~ip~~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
+.++...+..-++|+|.+.-+| ++.|||..||++|.+|.+
T Consensus 93 ~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~ 134 (248)
T PRK12377 93 IADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV 134 (248)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 3444444556789999876678 999999999999999874
No 64
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=54.99 E-value=24 Score=38.44 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=36.8
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
+=-+.+|.|+.-.++..|.+-| +++-|.+||++ .+|+.|+.+.++ +..+|++
T Consensus 198 ~gvv~~v~g~~~~~~~~L~~~~-~v~~v~fTGs~---~~G~~v~~~aa~~~~~~v~l 250 (476)
T cd07142 198 DGVLNIVTGFGPTAGAAIASHM-DVDKVAFTGST---EVGKIIMQLAAKSNLKPVTL 250 (476)
T ss_pred cccEEEEeCCchhHHHHHhcCC-CCCEEEEECcH---HHHHHHHHHHHHcCCCeEEE
Confidence 4456777776544444443333 48889999998 899999999886 7778764
No 65
>PRK08181 transposase; Validated
Probab=54.85 E-value=9.5 Score=38.91 Aligned_cols=49 Identities=27% Similarity=0.311 Sum_probs=34.6
Q ss_pred cCCchhhHhhhhcCCCCCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
+-....+-.-.++-.+.-+.|+|.|.+..+| ++.|||..+|++|.+|..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence 3333333333333334556799999987788 899999999999999864
No 66
>PRK07952 DNA replication protein DnaC; Validated
Probab=54.75 E-value=22 Score=35.80 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.8
Q ss_pred hhhcCCCCCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 455 VVNSLPKTTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 455 v~~~ip~~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
..++..++..-++|.|.+.-+| ++.|||.+|+++|.+|++
T Consensus 91 ~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~ 132 (244)
T PRK07952 91 YVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLI 132 (244)
T ss_pred HHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3344555556789999877678 899999999999999975
No 67
>PRK05855 short chain dehydrogenase; Validated
Probab=53.89 E-value=16 Score=39.41 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=26.8
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+.+++||++ +=+|+++|..|.++|.+|++
T Consensus 315 ~~~~lv~G~s--~giG~~~a~~l~~~G~~v~~ 344 (582)
T PRK05855 315 GKLVVVTGAG--SGIGRETALAFAREGAEVVA 344 (582)
T ss_pred CCEEEEECCc--CHHHHHHHHHHHHCCCEEEE
Confidence 3578999999 68999999999999999875
No 68
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=53.73 E-value=24 Score=38.88 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=36.0
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
+=-+.+|+|+.-.+...|-+- ++++-|.+||++ ++|++|+.+.++ +..+|.+
T Consensus 215 ~gvv~~v~g~~~~~~~~L~~~-p~v~~V~FTGS~---~~G~~i~~~aa~~~l~~~~l 267 (501)
T PLN02766 215 DGVINVVTGFGPTAGAAIASH-MDVDKVSFTGST---EVGRKIMQAAATSNLKQVSL 267 (501)
T ss_pred cCcEEEEecCchHHHHHHhcC-CCCCEEEEECcH---HHHHHHHHHhhhcCCCeEEE
Confidence 334778888654333333332 358899999998 899999998884 6677754
No 69
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=53.33 E-value=24 Score=38.11 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=34.4
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.-.+.--+-+ .++++.|++||++ .+|+.|+....+++.+|.+
T Consensus 182 ~~~~v~g~~~~~~~~l~~-~~~v~~V~fTGs~---~~g~~i~~~aa~~~~~v~l 231 (456)
T cd07145 182 VINVVTGYGSEVGDEIVT-NPKVNMISFTGST---AVGLLIASKAGGTGKKVAL 231 (456)
T ss_pred cEEEEeCCCchHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHHhhcCCceEE
Confidence 367787753222111112 2378889999998 7999999999988888864
No 70
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=53.04 E-value=23 Score=38.59 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=36.2
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.=-+.+|+|+.=..+..++. | ++-|.+||++ ++|+.|+....++..+|++
T Consensus 156 ~gv~~~v~g~~~~~~~L~~~-~--v~~V~fTGS~---~~g~~i~~~aa~~~~~v~l 205 (449)
T cd07136 156 EEYVAVVEGGVEENQELLDQ-K--FDYIFFTGSV---RVGKIVMEAAAKHLTPVTL 205 (449)
T ss_pred CCEEEEEeCChHHHHHHhcC-C--CCEEEEECCH---HHHHHHHHHHHhcCCCEEE
Confidence 34456777754334444442 3 9999999998 8999999988888888764
No 71
>PRK08727 hypothetical protein; Validated
Probab=52.74 E-value=21 Score=35.18 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.0
Q ss_pred ceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
+-+++.|.+..+| +.+|+|.++|++|.+|..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y 74 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAY 74 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4599999988788 899999999999998864
No 72
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=52.38 E-value=15 Score=37.40 Aligned_cols=134 Identities=16% Similarity=0.316 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch------h---hhhhcccccccccccCCcchhhcchhhhHHHHHHH----HHHHHH
Q 011017 128 VILTILVHMGPVEFLYYWFHRALHH------H---YLYSRYHSHHHSSVVTEPITSVIHPFAEHIVYFLL----FAIPLV 194 (495)
Q Consensus 128 ~i~~lll~llv~Df~fYw~HRllH~------~---~Ly~riHk~HHss~~p~p~ta~~~hplE~ll~~~l----~~iPll 194 (495)
.+++.++..+..||..=.+|.+--. | .-+-| =+-||. .|++-.+..++|.+..... ...|+-
T Consensus 109 ~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~r-freHH~----dP~tITr~~f~~~~~ll~~a~~f~v~~~d 183 (293)
T KOG3011|consen 109 PALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFER-FQEHHK----DPWTITRRQFANNLHLLARAYTFIVLPLD 183 (293)
T ss_pred HHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHH-HHhccC----CcceeeHHHHhhhhHHHHHhheeEecCHH
Confidence 5666777788899999999988543 1 12334 556885 4667677777776432211 111221
Q ss_pred HHH--HhhhhhHHHHHHHHHHHHHHhhhcccCceecccccc--cccCCcccccCChhhhHHHhhc-CCCCcccccchhhh
Q 011017 195 TTM--VLKNASIASFVGYIIYVDFMNNMGHCNFEFIPMWLF--TVFPPLKFLMYTPSYHSLHHTQ-FRTNYSLFMPIYDY 269 (495)
Q Consensus 195 ~~~--llg~~si~~~~~y~i~~~~~~~~~HsG~e~~P~~l~--~~lp~L~~li~tp~~H~lHH~~-~~~NYG~~f~lWDr 269 (495)
.+. ....+-+.++.+++.+..-...+.|.-..+ |.+.. +..+ ++....+|..||.. .++|||....+|.+
T Consensus 184 ~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gL-P~wVv~LQd~h----lilpRkhH~iHH~aPh~~yyCI~tGw~N~ 258 (293)
T KOG3011|consen 184 LAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGL-PPWVVLLQDMH----LILPRKHHRIHHVAPHNTYYCIVSGWWNW 258 (293)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccC-chHHHHHhhcc----eecccccccccccCccccceEEeechhhc
Confidence 110 000011223333444444555677854443 54321 2222 34567899999987 79999999999887
Q ss_pred hc
Q 011017 270 IY 271 (495)
Q Consensus 270 LF 271 (495)
..
T Consensus 259 ~L 260 (293)
T KOG3011|consen 259 VL 260 (293)
T ss_pred hH
Confidence 53
No 73
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=51.16 E-value=29 Score=37.86 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=35.5
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-.++.-|-+= ++++-|.+||++ ++|+.|+.+..++.++|++
T Consensus 192 ~gvv~~v~g~~~~~~~~L~~~-~~v~~V~fTGS~---~~G~~i~~~aa~~~~p~~l 243 (479)
T cd07116 192 PGVVNVVNGFGLEAGKPLASS-KRIAKVAFTGET---TTGRLIMQYASENIIPVTL 243 (479)
T ss_pred cCcEEEEecCchhHHHHHhcC-CCcCEEEEECCH---HHHHHHHHHHHcCCCeEEE
Confidence 334677777533222222222 348999999998 8999999998888888764
No 74
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=49.53 E-value=33 Score=37.07 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=36.7
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|+|+.-.+.-.|-+- ++++-|++||.+ ++|+.|+....++..+|.+
T Consensus 176 P-~gvv~~v~g~~~~~~~~L~~~-~~v~~V~fTGs~---~~g~~v~~~aa~~~~~~~l 228 (456)
T cd07110 176 P-PGVLNVVTGTGDEAGAPLAAH-PGIDKISFTGST---ATGSQVMQAAAQDIKPVSL 228 (456)
T ss_pred C-CCcEEEEecCchHHHHHHhcC-CCCCEEEEECCH---HHHHHHHHHHhhcCCeEEE
Confidence 5 334778887643222222222 478889999998 8999999988888888765
No 75
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=49.28 E-value=32 Score=37.46 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|.|+.-.++-.|-+-| +++-|++||.+ ++|+.|+....++..+|.+
T Consensus 190 P-~gv~~~v~g~~~~~~~~l~~~~-~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 242 (482)
T cd07119 190 P-AGVVNLVTGSGATVGAELAESP-DVDLVSFTGGT---ATGRSIMRAAAGNVKKVAL 242 (482)
T ss_pred C-cCcEEEEecCcHHHHHHHhcCC-CCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 5 3347777776542222222223 78889999998 8999999988877777754
No 76
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=49.22 E-value=29 Score=33.25 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=34.7
Q ss_pred cCCCCcceEEecCC-----------chhhHhhhhcC-CC-CCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 435 RQPNKLKIKVVDGS-----------SLAAAVVVNSL-PK-TTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 435 ~~p~~l~~~vv~g~-----------~l~~a~v~~~i-p~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
++| ++++.++..+ .+++. +++++ ++ ...+|+++|.. .+-+++...|.++|+.
T Consensus 158 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~~~~~~~~~~v~icGp~---~m~~~~~~~l~~~gv~ 222 (231)
T cd06215 158 RHP-NFRLHLILEQPAPGAWGGYRGRLNAE-LLALLVPDLKERTVFVCGPA---GFMKAVKSLLAELGFP 222 (231)
T ss_pred HCC-CeEEEEEEccCCCCcccccCCcCCHH-HHHHhcCCccCCeEEEECCH---HHHHHHHHHHHHcCCC
Confidence 466 7777755322 23343 44444 43 23589999998 7889999999999873
No 77
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=48.62 E-value=31 Score=37.25 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=35.5
Q ss_pred CCCcceEEecCCchh-hHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLA-AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~-~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|.|..-. ...++.. .+.|.+||.+ ++|+.|+....++.++|.+
T Consensus 174 P-~gv~~~v~g~~~~~~~~l~~~----~~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 224 (454)
T cd07101 174 P-RDLWQVVTGPGSEVGGAIVDN----ADYVMFTGST---ATGRVVAERAGRRLIGCSL 224 (454)
T ss_pred C-CCcEEEEeCCcHHHHHHHHhC----CCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 5 3347788885433 3333332 3579999998 8999999998888888765
No 78
>PLN02434 fatty acid hydroxylase
Probab=48.55 E-value=33 Score=34.63 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhh---hhhcccccccccc
Q 011017 127 GVILTILVHMGPVEFLYYWFHRALHHHY---LYSRYHSHHHSSV 167 (495)
Q Consensus 127 g~i~~lll~llv~Df~fYw~HRllH~~~---Ly~riHk~HHss~ 167 (495)
.+....++..++.|...|..|..--... -.|+.|..||--.
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~ 208 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCC
Confidence 3455566667788888888887532222 3578999999643
No 79
>PRK08324 short chain dehydrogenase; Validated
Probab=48.19 E-value=19 Score=41.06 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=26.7
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.|++||++ +-+|+++|..|.++|.+|++
T Consensus 423 k~vLVTGas--ggIG~~la~~L~~~Ga~Vvl 451 (681)
T PRK08324 423 KVALVTGAA--GGIGKATAKRLAAEGACVVL 451 (681)
T ss_pred CEEEEecCC--CHHHHHHHHHHHHCcCEEEE
Confidence 689999999 68999999999999999875
No 80
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=47.73 E-value=22 Score=37.71 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=31.9
Q ss_pred hhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 456 ~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++.++++.+.|.+.|.+ +.+|..+|.+|.++|.+|.+
T Consensus 91 ~~~~~~~~~~I~IiGG~--GlmG~slA~~l~~~G~~V~~ 127 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGK--GQLGRLFAKMLTLSGYQVRI 127 (374)
T ss_pred ccccCcccceEEEEcCC--ChhhHHHHHHHHHCCCeEEE
Confidence 46777788899999965 59999999999999998875
No 81
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=47.69 E-value=35 Score=37.05 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=35.2
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+.-..+..|-+- ++++-|++||++ ++|+.|+....++..++.+
T Consensus 190 ~gv~~~v~g~~~~~~~~L~~~-~~v~~V~fTGs~---~~g~~v~~~a~~~l~~~~l 241 (467)
T TIGR01804 190 DGVFNVVLGKGAEVGEPLVNH-KDVAKVSFTGGV---PTGKKIMAAAADHLKHVTM 241 (467)
T ss_pred cCcEEEEeCCcHHHHHHHhcC-CCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 334677777533222223222 378899999998 8999999988877767654
No 82
>PLN02467 betaine aldehyde dehydrogenase
Probab=47.29 E-value=35 Score=37.70 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=37.7
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|.|+.-.++.-|-+ .++++.|.+||++ .+|++|+....++..+|++
T Consensus 207 P-~gvv~~v~g~~~~~~~~L~~-~~~v~~v~fTGs~---~~g~~v~~~aa~~~~~~~l 259 (503)
T PLN02467 207 P-PGVLNVVTGLGTEAGAPLAS-HPGVDKIAFTGST---ATGRKIMTAAAQMVKPVSL 259 (503)
T ss_pred C-cCeEEEEeCCchhHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHHhccCCcEEE
Confidence 5 33478888764333322322 3478999999998 8999999998888888765
No 83
>PRK06046 alanine dehydrogenase; Validated
Probab=47.26 E-value=68 Score=33.32 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=56.8
Q ss_pred HhcCCeEEEeccccccccccc-cceeeeccCC-CCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchh
Q 011017 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQP-NKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p-~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k 476 (495)
+..|+|+++.--=|-++.|.. .|.+.+. +| +..-.=++||+.||+ |+-..-+ |++.+.|-+.|+. .
T Consensus 64 ~~~g~K~~~~~p~N~~~glp~~~g~i~L~-d~~tG~p~aild~~~lT~~RTaA~sala~~~La~~~~~~vgiiG~G---~ 139 (326)
T PRK06046 64 DIAGVKIVNVHPGNPDRGLPTVMAVIILN-SPETGFPLAIMDGTYLTDMRTGAAGGVAAKYLARKDSKVVGIIGAG---N 139 (326)
T ss_pred CeEEEEEEeeCCCCcccCCCceeEEEEEE-eCCCCceEEEEcCccHHHHHHHHHHHHHHHHhCCCCCCEEEEECCc---H
Confidence 457999999765565444433 2444443 33 355577899999974 2223445 7899999999997 8
Q ss_pred HHHHHHHHHh-hcCcEee
Q 011017 477 VANAVASSLC-QMGIKVS 493 (495)
Q Consensus 477 ~~~a~a~~lc-~~~~~v~ 493 (495)
.|++.+.+|+ .++++.+
T Consensus 140 qa~~h~~al~~~~~i~~v 157 (326)
T PRK06046 140 QARTQLLALSEVFDLEEV 157 (326)
T ss_pred HHHHHHHHHHhhCCceEE
Confidence 8999999998 3566543
No 84
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=46.83 E-value=36 Score=37.05 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=34.8
Q ss_pred ceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|+.- +...++.. ++++-|.+||++ .+|++|+....++..+|.+
T Consensus 194 vv~vv~g~~~~~~~~l~~~--~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (473)
T cd07097 194 VFNLVMGSGSEVGQALVEH--PDVDAVSFTGST---AVGRRIAAAAAARGARVQL 243 (473)
T ss_pred ceEEeccCchHHHHHHhcC--CCCCEEEEECcH---HHHHHHHHHHhccCCcEEE
Confidence 3677777532 22222221 478889999998 8999999998888888764
No 85
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=46.70 E-value=35 Score=37.24 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.-+.+.+.. .++++-|.+||++ .+|++|+.+..++..+|++
T Consensus 196 vv~~v~g~~~~~~~L~~--~~~vd~v~fTGs~---~~g~~i~~~aa~~~~~~~l 244 (478)
T cd07086 196 VVNLVTGGGDGGELLVH--DPRVPLVSFTGST---EVGRRVGETVARRFGRVLL 244 (478)
T ss_pred ceEEEecCchhHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHhccCCcEEe
Confidence 36667665433332221 4578889999998 8999999988888877764
No 86
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=46.70 E-value=39 Score=37.15 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCCcceEEecCCchhh-HhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAA-AVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~-a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|+|+.-.+ ..++. -++++-|.+||++ ++|+.|+....++..+|.+
T Consensus 202 P-~gvv~vv~g~~~~~~~~l~~--~~~v~~v~FTGS~---~~G~~i~~~aa~~l~~~~l 254 (482)
T PRK11241 202 P-AGVFNVVTGSAGAVGGELTS--NPLVRKLSFTGST---EIGRQLMEQCAKDIKKVSL 254 (482)
T ss_pred C-cccEEEEecCCchhHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 6 44588888864332 22332 3488999999998 9999999998888888764
No 87
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=46.55 E-value=38 Score=37.10 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|+|+.-.+...|-+ .++++-|.+||++ ++|+.|+.+..++.++|++
T Consensus 191 P-~gvv~~v~g~~~~~~~~L~~-~~~v~~V~fTGs~---~~g~~i~~~aa~~~~p~~l 243 (480)
T cd07559 191 P-KGVVNVVTGFGSEAGKPLAS-HPRIAKLAFTGST---TVGRLIMQYAAENLIPVTL 243 (480)
T ss_pred C-cCeEEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHhccCCcEEe
Confidence 5 44478888864322222222 3478999999998 8999999998888888864
No 88
>PRK06526 transposase; Provisional
Probab=46.15 E-value=18 Score=36.39 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.0
Q ss_pred CceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
-..|+++|.+..+| ++.||+..+|++|.+|.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 34689998887778 999999999999999864
No 89
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=45.92 E-value=39 Score=36.75 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=35.2
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.=-+.+|+|+.-.++-.|-+ .++++-|.+||.+ ++|++|+....+++.+|++
T Consensus 192 ~gvv~~v~g~~~~~~~~L~~-~~~vd~V~ftGs~---~~g~~i~~~aa~~~~~~~l 243 (478)
T cd07131 192 PGVVNVVHGRGEEVGEALVE-HPDVDVVSFTGST---EVGERIGETCARPNKRVAL 243 (478)
T ss_pred CCcEEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 33467777755322222222 2378899999998 8999999888777777764
No 90
>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.
Probab=45.76 E-value=38 Score=36.56 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=35.7
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|+|+.-+++.+++. | ++.|.+||.+ ++|+.|+....++..+|.+
T Consensus 159 v~~v~g~~~~~~~l~~~-~--v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 205 (433)
T cd07134 159 VAVFEGDAEVAQALLEL-P--FDHIFFTGSP---AVGKIVMAAAAKHLASVTL 205 (433)
T ss_pred EEEEeCChhHHHHHHhC-C--CCEEEEECCh---HHHHHHHHHHHhcCCcEEE
Confidence 66788866556656653 3 7899999988 8999999887777777654
No 91
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=45.61 E-value=2.7e+02 Score=29.05 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=27.4
Q ss_pred HHHhhhcccCceecc------------cccccccCCcccccCChhhhHHHhhcCCCCccc
Q 011017 215 DFMNNMGHCNFEFIP------------MWLFTVFPPLKFLMYTPSYHSLHHTQFRTNYSL 262 (495)
Q Consensus 215 ~~~~~~~HsG~e~~P------------~~l~~~lp~L~~li~tp~~H~lHH~~~~~NYG~ 262 (495)
...|...|-|..-.+ .+|...-.+.+++..--.+|.-||.+...-|-.
T Consensus 220 ~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~y~~ 279 (314)
T cd03512 220 ELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTRPYQA 279 (314)
T ss_pred HHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCCchhh
Confidence 445677898863211 112211123344555667899999987766654
No 92
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.45 E-value=38 Score=34.82 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=29.6
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.++-.-|+|.+.|+. .=+|++||..|.++|.+|.+
T Consensus 154 ~i~l~Gk~vvViG~g--g~vGkpia~~L~~~gatVtv 188 (283)
T PRK14192 154 NIELAGKHAVVVGRS--AILGKPMAMMLLNANATVTI 188 (283)
T ss_pred CCCCCCCEEEEECCc--HHHHHHHHHHHHhCCCEEEE
Confidence 345566799999998 35999999999999999876
No 93
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=45.22 E-value=38 Score=36.52 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=34.4
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+.-.+.--|.+-| +++-|++||.+ .+|+.|+....+.+.+|++
T Consensus 174 ~g~v~~v~g~~~~~~~~L~~~~-~i~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 225 (455)
T cd07093 174 PGVVNVVHGFGPEAGAALVAHP-DVDLISFTGET---ATGRTIMRAAAPNLKPVSL 225 (455)
T ss_pred ccceEEEecCchHHHHHHhcCC-CccEEEEECCH---HHHHHHHHHHhhcccceEe
Confidence 4446677774333222222333 68888999987 8899998888877887764
No 94
>PRK06835 DNA replication protein DnaC; Validated
Probab=44.32 E-value=27 Score=36.64 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=28.9
Q ss_pred CCCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
++-+-++|.|.+..+| ++.|||..|+++|.+|+.
T Consensus 181 ~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 3447789999887788 899999999999999974
No 95
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=44.10 E-value=24 Score=40.18 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=30.3
Q ss_pred hhhcCCC----CCceEEEeccCCchhHHHHHHHHHhhc-CcEeee
Q 011017 455 VVNSLPK----TTAHVLLRGTVTANKVANAVASSLCQM-GIKVSF 494 (495)
Q Consensus 455 v~~~ip~----~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~~ 494 (495)
++++-|. ..+.|++||++ +=+|+.++.+|.++ |.+|..
T Consensus 303 ~~~~~~~~~~~~~~~VLVTGat--GFIGs~Lv~~Ll~~~g~~V~~ 345 (660)
T PRK08125 303 RLNSKPACSAKRRTRVLILGVN--GFIGNHLTERLLRDDNYEVYG 345 (660)
T ss_pred EecccchhhhhcCCEEEEECCC--chHHHHHHHHHHhCCCcEEEE
Confidence 4555554 66789999999 57999999999985 788863
No 96
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=43.48 E-value=43 Score=36.65 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.-++.. |-+ -++++-|++||++ ++|+.|+....++..+|.+
T Consensus 201 ~v~~v~g~~~~~~~-L~~-~~~vd~V~fTGS~---~~g~~i~~~aa~~l~~~~l 249 (488)
T PRK13252 201 VFNVVQGDGRVGAW-LTE-HPDIAKVSFTGGV---PTGKKVMAAAAASLKEVTM 249 (488)
T ss_pred cEEEEecCcHHHHH-Hhc-CCCCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 36677775543322 222 2378889999988 8899999887777777654
No 97
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.44 E-value=21 Score=39.46 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHhhcCcEeee
Q 011017 473 TANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 473 ~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|-+|.|+|||.++.+||-+|.+
T Consensus 280 SSGkmG~alA~aa~~~GA~Vtl 301 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTL 301 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEE
Confidence 3379999999999999999986
No 98
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=43.16 E-value=25 Score=39.84 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=25.4
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
..|++||++ +-||++++.+|+++|++|.
T Consensus 381 mkiLVtGa~--G~iG~~l~~~L~~~g~~v~ 408 (668)
T PLN02260 381 LKFLIYGRT--GWIGGLLGKLCEKQGIAYE 408 (668)
T ss_pred ceEEEECCC--chHHHHHHHHHHhCCCeEE
Confidence 469999999 6999999999999999883
No 99
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=43.12 E-value=47 Score=35.86 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.2
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|+.-..+-.+-+- ++++-|++||.+ ++|+.|+....++..+|.+
T Consensus 176 ~~~~v~g~~~~~~~~l~~~-~~id~v~fTGs~---~~g~~v~~~aa~~~~~~~l 225 (453)
T cd07115 176 VLNVVTGFGEVAGAALVEH-PDVDKITFTGST---AVGRKIMQGAAGNLKRVSL 225 (453)
T ss_pred heEEEecCchhHHHHHhcC-CCCCEEEEECcH---HHHHHHHHHHhhcCCeEEE
Confidence 3677777543222222222 367889999988 8999999877777777764
No 100
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=42.76 E-value=43 Score=36.58 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=31.6
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-++..+++ .++++-|++||.+ ++|+.|+....++-.+|++
T Consensus 196 ~~~v~g~~~~~~~L~~--~~~vd~V~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (474)
T cd07130 196 ASLVCGGADVGEALVK--DPRVPLVSFTGST---AVGRQVGQAVAARFGRSLL 243 (474)
T ss_pred EEEEeCChhHHHHHhc--CCCCCEEEEECch---HHHHHHHHHHHhcCCCEEE
Confidence 5666665433322221 2467888999988 8899998887777666654
No 101
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=42.68 E-value=69 Score=30.93 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=16.4
Q ss_pred CCcccccCChhhhHHHhhc-CCCCcc
Q 011017 237 PPLKFLMYTPSYHSLHHTQ-FRTNYS 261 (495)
Q Consensus 237 p~L~~li~tp~~H~lHH~~-~~~NYG 261 (495)
+++.-+..+-..|..||.. .+.+.|
T Consensus 127 ~~~~llt~GEg~HNnHHafP~~ar~g 152 (178)
T cd03505 127 WWVALLTFGEGWHNNHHAFPGDARNG 152 (178)
T ss_pred HHHHHHHccccccccccCCcchhhhC
Confidence 3344344577899999997 355555
No 102
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=42.46 E-value=48 Score=35.64 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=35.4
Q ss_pred cceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 440 LKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 440 l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
=-+.+|+|+.-..+-.+-+ -++++-|++||.+ ++|+.|+....+++.++++
T Consensus 175 g~v~~v~~~~~~~~~~l~~-~~~vd~V~ftGs~---~~g~~v~~~aa~~~~~~~l 225 (451)
T cd07103 175 GVLNVVTGSPAEIGEALCA-SPRVRKISFTGST---AVGKLLMAQAADTVKRVSL 225 (451)
T ss_pred ccEEEEecCchhHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 3477888764332222211 2378899999997 8999999998888887764
No 103
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=42.30 E-value=49 Score=27.34 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCC
Q 011017 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGS 448 (495)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~ 448 (495)
..++++..++.+.|+++.. .....-++|.-+.-++|++.++.+..|+
T Consensus 66 ~d~~~~~~~l~~~G~~~~~-----~~~~~~~~~~~~~~~DPdG~~iEi~~~~ 112 (113)
T cd08345 66 EEFDEYTERLKALGVEMKP-----ERPRVQGEGRSIYFYDPDGHLLELHAGT 112 (113)
T ss_pred HHHHHHHHHHHHcCCccCC-----CccccCCCceEEEEECCCCCEEEEEeCc
Confidence 4688888899999999852 1122224566677789988888888775
No 104
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=42.18 E-value=45 Score=37.27 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
| +=-+.+|.|..=.+...|-+- ++++-|++||.+ .+|+.|+.+.++ +..+|++
T Consensus 251 P-~gvv~vv~g~~~~~~~~L~~~-~~vd~V~FTGS~---~~G~~v~~~aa~~~l~pv~l 304 (538)
T PLN02466 251 P-PGVLNVVSGFGPTAGAALASH-MDVDKLAFTGST---DTGKIVLELAAKSNLKPVTL 304 (538)
T ss_pred C-cccEEEEecCchhHHHHHhcC-CCcCEEEEECCH---HHHHHHHHHHHhcCCCcEEE
Confidence 5 445777877543222233332 358899999998 899999988775 5677754
No 105
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=42.17 E-value=45 Score=36.41 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=35.4
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-++..+++ -++++.|++||++ ++|++|+....+++.+|.+
T Consensus 199 ~gvv~~v~g~~~~~~~L~~--~~~v~~V~fTGS~---~~G~~i~~~aa~~~~~~~l 249 (477)
T cd07113 199 DGVLNVVNGKGAVGAQLIS--HPDVAKVSFTGSV---ATGKKIGRQAASDLTRVTL 249 (477)
T ss_pred CCcEEEEecCchHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHHhhcCceEe
Confidence 3347777775433333332 3567889999998 8999999888887777754
No 106
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=42.03 E-value=48 Score=35.94 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=33.8
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-.++..|-+ .++++-|.+||++ +.|+.|+....++..+|.+
T Consensus 190 ~gvv~~v~g~~~~~~~~l~~-~~~v~~V~ftGs~---~~g~~i~~~aa~~~~~~~l 241 (468)
T cd07088 190 AGVLNIVTGRGSVVGDALVA-HPKVGMISLTGST---EAGQKIMEAAAENITKVSL 241 (468)
T ss_pred ccceEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 33466777754422222222 2367888999987 8889888887777777654
No 107
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=41.87 E-value=35 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.5
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCc-Eeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~-~v~~ 494 (495)
-+.|++.|+. -.|||+|.+|++.|+ +|.+
T Consensus 127 ~k~vlIlGaG---Gaaraia~aL~~~G~~~I~I 156 (284)
T PRK12549 127 LERVVQLGAG---GAGAAVAHALLTLGVERLTI 156 (284)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHcCCCEEEE
Confidence 3789999997 689999999999998 5654
No 108
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=41.68 E-value=46 Score=37.98 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|.|+.=++..++. .++++-|++||++ .+|+.|+....++..+|.+
T Consensus 305 P-~GvvnvV~G~~~~~~~L~~--~~~Vd~V~FTGSt---~vG~~I~~~Aa~~lk~v~L 356 (604)
T PLN02419 305 P-DGVLNIVHGTNDTVNAICD--DEDIRAVSFVGSN---TAGMHIYARAAAKGKRIQS 356 (604)
T ss_pred C-cceEEEEeCChHHHHHHHh--CCCCCEEEEeCCh---HHHHHHHHHHhccCCcEEE
Confidence 5 3347778875423322221 4588999999998 8999999988888888764
No 109
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=41.51 E-value=52 Score=35.96 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=33.9
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+.-.+.-.|-+ .++++-|.+||++ .+|++|+.+..++..+|++
T Consensus 201 ~gv~~~v~g~~~~~~~~L~~-~~~vd~V~fTGS~---~~g~~i~~~a~~~~~~~~l 252 (484)
T cd07144 201 PGVVNIIPGYGAVAGSALAE-HPDVDKIAFTGST---ATGRLVMKAAAQNLKAVTL 252 (484)
T ss_pred CCcEEEEecCCchHHHHHhc-CCCcCEEEEECcH---HHHHHHHHHHHhcCCeEEE
Confidence 44466777643222222222 2378889999998 8999999887777777754
No 110
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.46 E-value=35 Score=35.34 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred hhhHhhhhcC-----CCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVNSL-----PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~~i-----p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+.-+ +-.-|+|.+.|+. .=||+.+|..|+++|.+|.+
T Consensus 140 cTp~ai~~ll~~~~i~l~Gk~vvVIGrs--~~VG~pla~lL~~~gatVtv 187 (286)
T PRK14175 140 CTPLGIMEILKHADIDLEGKNAVVIGRS--HIVGQPVSKLLLQKNASVTI 187 (286)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCC--chhHHHHHHHHHHCCCeEEE
Confidence 3566655433 4466899999997 24999999999999999976
No 111
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=41.36 E-value=2.1e+02 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.++++|.++|-.+ +--=.+.|..++++|.+|.+
T Consensus 112 ~gi~~vvi~G~~t-~~CV~~Ta~~A~~~Gy~v~v 144 (179)
T cd01015 112 RGVDTLIVAGCST-SGCIRATAVDAMQHGFRPIV 144 (179)
T ss_pred cCCCEEEEeeecc-cHhHHHHHHHHHHCCCeEEE
Confidence 4889999999887 56667888999999999986
No 112
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=41.22 E-value=53 Score=35.64 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+++-|.+||.+ ++|+.|+.+..++..+|++
T Consensus 209 ~v~~v~fTGs~---~~g~~i~~~aa~~~~~v~l 238 (466)
T cd07138 209 DVDMVSFTGST---RAGKRVAEAAADTVKRVAL 238 (466)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhccCCeEEE
Confidence 67788888887 7888888887777777654
No 113
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=41.04 E-value=53 Score=35.35 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=35.4
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|++-++..++.. ++++.|.+||.+ .+|+.|+.+..++-.+|.+
T Consensus 173 ~g~~~~v~g~~~~~~~L~~~--~~v~~V~fTGs~---~~g~~v~~~a~~~~~~v~l 223 (452)
T cd07102 173 EGVFQVLHLSHETSAALIAD--PRIDHVSFTGSV---AGGRAIQRAAAGRFIKVGL 223 (452)
T ss_pred cCcEEEEeCCchhHHHHhcC--CCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 33467777765333333332 678889999987 8899999988777777754
No 114
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=40.74 E-value=23 Score=31.95 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEe
Q 011017 392 REAINSLIEEAILEADAKGVKVISL 416 (495)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~kv~sl 416 (495)
.-+-|..+-+|+.+|.++|+||+++
T Consensus 112 ~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 112 NSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp SSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3456788999999999999999986
No 115
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=40.62 E-value=53 Score=35.75 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=32.5
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-.+.-.|-+ -++++-|.+||++ .+|+.|+....+++.+|.+
T Consensus 197 ~~~v~g~~~~~~~~l~~-~~~vd~V~fTGs~---~~g~~i~~~aa~~~~~~~l 245 (475)
T PRK13473 197 LNVVTGRGATVGDALVG-HPKVRMVSLTGSI---ATGKHVLSAAADSVKRTHL 245 (475)
T ss_pred EEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 66777643322222222 2378889999987 8899998887777777754
No 116
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.61 E-value=34 Score=32.17 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+++-+=++|+|..+-.=-|-++|.+|+++|++|.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 34445578888874345788899999999999976
No 117
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=40.51 E-value=54 Score=35.66 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=32.6
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
-+.+|+|+.-.++-.|-+- ++++-|.+||.+ ++|+.|+....+ +..+|++
T Consensus 200 ~~~~v~g~~~~~~~~L~~~-~~vd~V~fTGs~---~~g~~v~~~aa~~~~~~~~l 250 (476)
T cd07091 200 VVNIVPGFGPTAGAAISSH-MDVDKIAFTGST---AVGRTIMEAAAKSNLKKVTL 250 (476)
T ss_pred cEEEEeCCChhHHHHHhcC-CCcCEEEEECcH---HHHHHHHHHHHhcCCceEEE
Confidence 3777877543322222222 378889999987 889999887776 5566654
No 118
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=40.38 E-value=38 Score=35.95 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceE----EecC-CchhhHh--hhhcCCC-CCc
Q 011017 393 EAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIK----VVDG-SSLAAAV--VVNSLPK-TTA 464 (495)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~----vv~g-~~l~~a~--v~~~ip~-~~~ 464 (495)
.-|=.|+.+|...|.+.|.- +..||. ||-+.---..||| +=.| -|+..|+ ....++. +-+
T Consensus 108 ~QIlGQVK~Ay~~A~~~g~~---------g~~L~~---lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~~~l~~k 175 (338)
T PRK00676 108 TEIQGQVKRAYLKAARERKL---------PFALHF---LFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRRQKSKKA 175 (338)
T ss_pred HHHHHHHHHHHHHHHHcCCc---------hHHHHH---HHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHhCCccCC
Confidence 33567788888888887752 122332 3332110022222 2222 2333332 2344432 668
Q ss_pred eEEEeccCCchhHHHHHHHHHhhcCcE-eee
Q 011017 465 HVLLRGTVTANKVANAVASSLCQMGIK-VSF 494 (495)
Q Consensus 465 ~v~l~g~~~~~k~~~a~a~~lc~~~~~-v~~ 494 (495)
.|++.|+. ++|+.+|.+|.++|++ |.+
T Consensus 176 ~vLvIGaG---em~~l~a~~L~~~g~~~i~v 203 (338)
T PRK00676 176 SLLFIGYS---EINRKVAYYLQRQGYSRITF 203 (338)
T ss_pred EEEEEccc---HHHHHHHHHHHHcCCCEEEE
Confidence 99999996 9999999999999975 443
No 119
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=40.17 E-value=55 Score=35.16 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=34.1
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+-+|+|+.-+.+.++.. | ++.|.+||++ +.|++|+....+++.++++
T Consensus 159 ~~vv~g~~~~~~~l~~~-~--v~~V~ftGs~---~~g~~i~~~a~~~~~~~~l 205 (426)
T cd07087 159 VAVVEGGVEVATALLAE-P--FDHIFFTGSP---AVGKIVMEAAAKHLTPVTL 205 (426)
T ss_pred EEEEeCCchHHHHHHhC-C--CCEEEEeCCh---HHHHHHHHHHHhhCCceEE
Confidence 46666655444445544 4 8899999998 8999999887777777654
No 120
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=40.11 E-value=45 Score=38.28 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=32.0
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHH--hhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL--CQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~l--c~~~~~v~~ 494 (495)
+-+|.|+ +..++..+| +++.|.+||++ ++|+.|+.+. .++..+|.+
T Consensus 209 ~~vv~g~---~~~~~~~~~-~i~~v~FTGS~---~~G~~i~~~~~a~~~~~~~~l 256 (675)
T PRK11563 209 LQLICGS---AGDLLDHLD-GQDVVTFTGSA---ATAQKLRAHPNVVANSVPFTA 256 (675)
T ss_pred EEEeeCC---HHHHhhcCC-CCCEEEEECcH---HHHHHHHhhhhhhhCCceEEE
Confidence 6667665 122444444 57899999998 9999999863 366777754
No 121
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=40.06 E-value=26 Score=38.08 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=39.7
Q ss_pred cceEEecCCchhhHhhhhcC-CCCCceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 440 LKIKVVDGSSLAAAVVVNSL-PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 440 l~~~vv~g~~l~~a~v~~~i-p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
-+.+.++|.+--++|=.-.- +...+.||.+|+| .|+||=|+.-|-+||..|-
T Consensus 55 ~~~~~~~~~~~e~~v~~~~~~~~~~~~VlVvGat--G~vG~~iv~~llkrgf~vr 107 (411)
T KOG1203|consen 55 TPISPVTGTTSEAEVSPPNNNSKKPTTVLVVGAT--GKVGRRIVKILLKRGFSVR 107 (411)
T ss_pred CCCCccccccceeeeccCCCCCCCCCeEEEecCC--CchhHHHHHHHHHCCCeee
Confidence 34667777777665542222 3467799999999 7999999999999998874
No 122
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=40.03 E-value=56 Score=35.27 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=34.1
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|..=+.+.+.+ ++ ++.|.+||++ .+|+.|+....++..+|++
T Consensus 159 ~~~~v~g~~~~~~~l~~--~~-v~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 206 (434)
T cd07133 159 EVAVVTGGADVAAAFSS--LP-FDHLLFTGST---AVGRHVMRAAAENLTPVTL 206 (434)
T ss_pred eEEEEeCChHHHHHHHh--CC-CCEEEEeCch---HHHHHHHHHHHhcCceEEE
Confidence 36677765333344443 23 8999999998 8999999987777777764
No 123
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=39.79 E-value=50 Score=35.70 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|+|+.-++..+++ -++++-|.+||.+ ++|+.|+....+.+.+|++
T Consensus 176 ~~~v~g~~~~~~~l~~--~~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 223 (457)
T cd07090 176 FNVVQGGGETGQLLCE--HPDVAKVSFTGSV---PTGKKVMSAAAKGIKHVTL 223 (457)
T ss_pred EEEEeCChhhHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHhccCCceEE
Confidence 5666664433333322 3367788888887 7888888887777777764
No 124
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=39.73 E-value=55 Score=35.55 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=32.5
Q ss_pred ceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|..- +...+++ .++++.|.+||.+ ++|+.|+.+..++..+|.+
T Consensus 190 vv~~v~g~~~~~~~~l~~--~~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 239 (465)
T cd07151 190 VLNVVVGAGSEIGDAFVE--HPVPRLISFTGST---PVGRHIGELAGRHLKKVAL 239 (465)
T ss_pred ceEEEecCchhhHHHHhc--CCCCCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 3556666422 2222222 2458889999988 8999999888877777764
No 125
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=39.69 E-value=55 Score=35.28 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=33.9
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.-++..++ + -++++-|++||.+ ++|+.|+....++..+|.+
T Consensus 172 ~~~~v~g~~~~~~~l~-~-~~~vd~V~fTGs~---~~g~~v~~~aa~~~~~~~l 220 (446)
T cd07106 172 VLNVVSGGDELGPALT-S-HPDIRKISFTGST---ATGKKVMASAAKTLKRVTL 220 (446)
T ss_pred eEEEeeCChhHHHHHh-c-CCCCCEEEEECCH---HHHHHHHHHHHhcCCeeEE
Confidence 3667777533222222 2 2478899999998 8999999988877777754
No 126
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=39.67 E-value=55 Score=35.50 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=31.3
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.-.++--|-+ .++++-|.+||.+ ++|+.|+....++..+|++
T Consensus 178 ~~~~v~g~~~~~~~~L~~-~~~v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 227 (454)
T cd07118 178 VVNIVTGYGATVGQAMTE-HPDVDMVSFTGST---RVGKAIAAAAARNLKKVSL 227 (454)
T ss_pred ceEEEecCCchHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHHhcCCcEEe
Confidence 355666643211111111 2377888888887 8888888888877777754
No 127
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=39.06 E-value=1e+02 Score=31.80 Aligned_cols=101 Identities=25% Similarity=0.274 Sum_probs=69.3
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEec-----cccccccccc-----cceeeeccCCCCcce-----EEecCCchhhHh
Q 011017 390 WRREAINSLIEEAILEADAKGVKVISLG-----LLNQGEELNR-----NGEIYLERQPNKLKI-----KVVDGSSLAAAV 454 (495)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~sl~-----~ln~~~~ln~-----~g~~~~~~~p~~l~~-----~vv~g~~l~~a~ 454 (495)
-..+.--..||+++.+.-..|..+|.|| .+.--..++. =|-+.++.|. |+|. |--||.-+.-+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~pi~lGGDHsit~~~~~a~~~~~~~~~gvI~iDAH~-Dl~~~~~g~~~~Hg~p~r~~~ 160 (305)
T COG0010 82 GDLEDAVDAIEEAVAELLSAGAFPIVLGGDHSITLGTVRALARKYGGPLGVIWIDAHA-DLRTPYSGSGNSHGTPLRRAL 160 (305)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeEEECCcchhhHHHHHHHHHhhCCceEEEEEecCc-cCCCCCCCCCCcccCHHHHHH
Confidence 3556667788999999999998899999 5554444443 3789999999 9995 788888887777
Q ss_pred hhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 455 VVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 455 v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
=.-.+++.-+.++..|.-+.++ +. -..+.-++||+|.
T Consensus 161 e~~~~~~~p~~~v~iGiR~~~~-~e-~~~~~~~~gi~~~ 197 (305)
T COG0010 161 EEGLIDGGPENVVQIGIRSVDP-EE-RAAVARERGIRVL 197 (305)
T ss_pred hccccCCCcceEEEEEeccCCh-HH-HHHHHHhcCCEEE
Confidence 2222222236788888775332 22 3335556898875
No 128
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=38.98 E-value=58 Score=35.19 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=33.7
Q ss_pred eEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.- ++..++ =.++++.|++||++ ++|+.|+.+..+++.+|++
T Consensus 177 ~~~v~g~~~~~~~~L~--~~~~v~~v~ftGs~---~~g~~i~~~aa~~~~p~~l 225 (454)
T cd07109 177 LNVVTGLGAEAGAALV--AHPGVDHISFTGSV---ETGIAVMRAAAENVVPVTL 225 (454)
T ss_pred eEEEecCchHHHHHHh--cCCCCCEEEEECCH---HHHHHHHHHHhhcCCcEEE
Confidence 566776432 222222 14578889999987 8999999998888888764
No 129
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=38.81 E-value=59 Score=35.54 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++.|++||++ +.|++|+....++..+|++
T Consensus 218 ~~vd~v~fTGS~---~~G~~i~~~aa~~~~~~~l 248 (481)
T TIGR03216 218 PGVDAITFTGET---RTGSAIMKAAADGVKPVSF 248 (481)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHhcCCCeEEE
Confidence 378888999987 8899998887777777754
No 130
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=38.78 E-value=53 Score=35.82 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=32.4
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|+|+.=++.. |-+-| +++.|.+||++ ++|++|+....+++.+|++
T Consensus 196 v~~v~g~~~~~~~-L~~~~-~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (478)
T cd07085 196 LNVVHGGKEAVNA-LLDHP-DIKAVSFVGST---PVGEYIYERAAANGKRVQA 243 (478)
T ss_pred EEEEecCHHHHHH-HhcCC-CcCEEEEECCH---HHHHHHHHHHhhcCCcEEe
Confidence 5666665322222 22223 58889999988 8999998887777777764
No 131
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=38.16 E-value=64 Score=35.32 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=34.5
Q ss_pred eEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|+|+.- +.+.+++ .++++-|.+||++ .+|+.|+....++.++|.+
T Consensus 195 ~~~v~g~~~~~~~~l~~--~~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 243 (475)
T cd07117 195 VNIVTGKGSKSGEYLLN--HPGLDKLAFTGST---EVGRDVAIAAAKKLIPATL 243 (475)
T ss_pred EEEEecCcHHHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHhccCCcEEE
Confidence 677777532 2233332 3478899999998 8899999998888888764
No 132
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=38.16 E-value=62 Score=35.03 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=33.8
Q ss_pred CcceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+.- ++..++. .++++-|.+||++ ++|+.|+....+++.+|.+
T Consensus 172 ~gvv~~v~g~~~~~~~~l~~--~~~i~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 223 (456)
T cd07107 172 PGVFNILPGDGATAGAALVR--HPDVKRIALIGSV---PTGRAIMRAAAEGIKHVTL 223 (456)
T ss_pred cCcEEEEeCCCchHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHhcCCCeEEE
Confidence 344567776543 2222221 3567788999987 8899999887777777764
No 133
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=38.05 E-value=1.7e+02 Score=26.74 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.0
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+.++|+++|-.+ +---.+.|..+.++|.+|.+
T Consensus 97 ~gi~~viv~G~~t-d~CV~~Ta~~a~~~g~~v~v 129 (155)
T cd01014 97 AGIDHLVICGAMT-EMCVDTTVRSAFDLGYDVTV 129 (155)
T ss_pred CCCCEEEEEeecc-chhHHHHHHHHHHCCCcEEE
Confidence 3779999999886 55567888999999999986
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=37.93 E-value=46 Score=32.80 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.1
Q ss_pred ceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
..++|.|...-+| +.+|+|.+++++|.+|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y 78 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVY 78 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 4689999886678 899999999999988864
No 135
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=37.83 E-value=62 Score=37.23 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=34.4
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHH--hhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL--CQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~l--c~~~~~v~~ 494 (495)
+=-+.+|+|+ .+.++..+| +.+-|.+||++ ++|++|+... .+++++|.+
T Consensus 202 ~gv~~~v~g~---~~~~~~~~~-~~~~V~FTGS~---~~G~~i~~~aaaa~~~~~~~l 252 (663)
T TIGR02278 202 EGSLQLICGS---AGDLLDHLD-HRDVVAFTGSA---ATADRLRAHPNVLERGIRFNA 252 (663)
T ss_pred CCcEEEEeCC---hHHHHhcCC-CCCEEEEECCH---HHHHHHHHhHhHHhcCceEEE
Confidence 4446677775 222444454 46789999998 9999999863 377888865
No 136
>PRK06893 DNA replication initiation factor; Validated
Probab=37.82 E-value=43 Score=32.79 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=25.9
Q ss_pred ceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
..++|.|.+.-+| +.+|||..+|++|.+|..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y 72 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIY 72 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 3578999887777 899999999999988753
No 137
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.62 E-value=2.7e+02 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=29.3
Q ss_pred hhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 454 VVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 454 ~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+|.+ +++++|+++|-.+ +=-=.+.|.-+.++|.+|++
T Consensus 126 ~~Lr~--~~i~~l~v~G~~t-d~CV~~T~~~A~~~gy~v~v 163 (205)
T COG1335 126 DILRN--LGIDTVVVCGIAT-DICVLATARDAFDLGYQVTL 163 (205)
T ss_pred HHHHH--CCCCEEEEeeeeh-hHHHHHHHHHHHHCCCeEEE
Confidence 35555 7999999999985 33336777888899999976
No 138
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=37.44 E-value=71 Score=34.53 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=36.0
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-.+.-.+-+-| +++-|.+||.+ ++|++|+....+++++|.+
T Consensus 176 ~~vv~~v~g~~~~~~~~l~~~~-~i~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 227 (457)
T cd07114 176 PGVVNVVTGFGPETGEALVEHP-LVAKIAFTGGT---ETGRHIARAAAENLAPVTL 227 (457)
T ss_pred CCcEEEEeCCCchHHHHHhcCC-CCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 4456777775433333233333 77889999987 8999999988888888765
No 139
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=37.39 E-value=61 Score=35.47 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=25.2
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++.|++||++ ++|+.|+....++..+|.+
T Consensus 214 ~~v~~V~fTGS~---~~G~~i~~~aa~~~~~~~l 244 (472)
T TIGR03374 214 EKVRMVSLTGSI---ATGEHILSHTAPSIKRTHM 244 (472)
T ss_pred CCcCEEEEECCH---HHHHHHHHHHhhcccceEE
Confidence 468889999988 8899998887777777764
No 140
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=37.38 E-value=83 Score=25.87 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.1
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhc-CcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQM-GIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~~ 494 (495)
-.-+.+.+.|.. .+|+.+|.+|++. +-+|.+
T Consensus 21 ~~~~~v~i~G~G---~~g~~~a~~l~~~~~~~v~v 52 (86)
T cd05191 21 LKGKTVVVLGAG---EVGKGIAKLLADEGGKKVVL 52 (86)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHHHcCCCEEEE
Confidence 455789999996 8999999999999 455544
No 141
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=37.14 E-value=53 Score=34.02 Aligned_cols=78 Identities=23% Similarity=0.179 Sum_probs=51.0
Q ss_pred HhcCCeEEEeccccccccccc-cceeeeccCCCCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhH
Q 011017 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~ 477 (495)
+-.|+|++|.--=|....|.. .|.+.+.--.+..-+=++||+.||+ |+..+-+ |++.+.+.+.|+. ..
T Consensus 63 ~~~gvK~v~~~p~N~~~glP~~~g~i~L~D~~TG~p~ai~dg~~lT~~RTaA~sala~~~La~~~~~~l~viGaG---~Q 139 (313)
T PF02423_consen 63 PVAGVKWVSVFPGNPKRGLPSIQGVILLFDPETGEPLAIMDGTWLTALRTAAVSALAARYLARPDARTLGVIGAG---VQ 139 (313)
T ss_dssp TEEEEEEEEEETTCGGGTSSSEEEEEEEEETTT--EEEEEESHHHHHHHHHHHHHHHHHHHS-TT--EEEEE--S---HH
T ss_pred cEEEEEEEEecCCccccCCCceeEEEEEEECCCCCEEEEecccchhhhHHHHHHHHHHHHhCcCCCceEEEECCC---HH
Confidence 478999999887787776654 3444443222345566999999974 2333333 7899999999997 89
Q ss_pred HHHHHHHHhh
Q 011017 478 ANAVASSLCQ 487 (495)
Q Consensus 478 ~~a~a~~lc~ 487 (495)
|+.-+.++|+
T Consensus 140 A~~~~~a~~~ 149 (313)
T PF02423_consen 140 ARWHLRALAA 149 (313)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 142
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=36.78 E-value=48 Score=31.91 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=33.7
Q ss_pred hhHhhhhcCCCC---CceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 451 AAAVVVNSLPKT---TAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 451 ~~a~v~~~ip~~---~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
.+...+++.+++ ..-|+++|...-+| +++|++..++++|.++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~ 75 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARY 75 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 345566666552 34699999987788 999999999999987754
No 143
>PRK06921 hypothetical protein; Provisional
Probab=36.49 E-value=48 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCceEEEeccCCchh--HHHHHHHHHhhc-CcEeee
Q 011017 462 TTAHVLLRGTVTANK--VANAVASSLCQM-GIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k--~~~a~a~~lc~~-~~~v~~ 494 (495)
..+-++|+|.+..+| ++.|||..|+++ |+.|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y 151 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY 151 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE
Confidence 356789999988788 899999999998 998864
No 144
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=36.48 E-value=66 Score=30.88 Aligned_cols=30 Identities=33% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCCCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 459 LPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 459 ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
++.+-.+|+++|.. ..-+++..+|.++|+.
T Consensus 189 ~~~~~~~v~icGp~---~m~~~~~~~l~~~G~~ 218 (228)
T cd06209 189 LNDGDVDVYLCGPP---PMVDAVRSWLDEQGIE 218 (228)
T ss_pred ccCCCcEEEEeCCH---HHHHHHHHHHHHcCCC
Confidence 44444579999987 7889999999999983
No 145
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=36.44 E-value=39 Score=37.70 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|.|+++|+. -.|||||.+|.++|.+|.+
T Consensus 379 ~k~vlIlGaG---GagrAia~~L~~~G~~V~i 407 (529)
T PLN02520 379 GKLFVVIGAG---GAGKALAYGAKEKGARVVI 407 (529)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHCCCEEEE
Confidence 4789999996 7899999999999998875
No 146
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=36.15 E-value=53 Score=33.44 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=30.7
Q ss_pred cCCchhhHhhhhcC--CCCCceEEEeccCCchhHHHHHHHHHhhcCcE-eee
Q 011017 446 DGSSLAAAVVVNSL--PKTTAHVLLRGTVTANKVANAVASSLCQMGIK-VSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~i--p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~-v~~ 494 (495)
||.-+..+.--+.+ +..-+.|++.|+. -.|||||.+|.+.|++ |.+
T Consensus 106 D~~G~~~~l~~~~~~~~~~~k~vlvlGaG---Gaarai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 106 DWDGIAGALANIGKFEPLAGFRGLVIGAG---GTSRAAVYALASLGVTDITV 154 (282)
T ss_pred CHHHHHHHHHhhCCccccCCceEEEEcCc---HHHHHHHHHHHHcCCCeEEE
Confidence 45455554432222 1234689999997 7899999999999984 543
No 147
>PRK09183 transposase/IS protein; Provisional
Probab=35.93 E-value=47 Score=33.45 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=26.4
Q ss_pred ceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
.-|+++|.+..+| ++.||+..+|++|.+|.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4688998887778 899999999999999864
No 148
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=35.80 E-value=78 Score=33.77 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.6
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+.-.++--|-+-| +++-|.+||.+ ++|+.|+...+++..+|.+
T Consensus 156 ~gvv~~v~g~~~~~~~~L~~~~-~i~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 207 (431)
T cd07104 156 KGVLNVVPGGGSEIGDALVEHP-RVRMISFTGST---AVGRHIGELAGRHLKKVAL 207 (431)
T ss_pred cccEEEeeCCchhHHHHHhcCC-CCCEEEEECCH---HHHHHHHHHHhhcCCcEEE
Confidence 4446667765432222222222 67888899987 7888888888877777654
No 149
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=35.76 E-value=75 Score=34.58 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=24.2
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++.|.+||.+ ++|++|+....++..+|.+
T Consensus 196 ~~v~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 226 (455)
T cd07120 196 PDVDVISFTGST---ATGRAIMAAAAPTLKRLGL 226 (455)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 378888999987 8899998887777666654
No 150
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=35.61 E-value=63 Score=35.13 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=35.6
Q ss_pred CcceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh--cCcEeee
Q 011017 439 KLKIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ--MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~--~~~~v~~ 494 (495)
+=-+.+|.|+.- +...+++. ++++.|.+||++ ..|+.|+....+ ..++|++
T Consensus 168 ~gvv~~v~g~~~~~~~~L~~~--~~v~~V~fTGs~---~~G~~i~~~aa~~~~~~p~~l 221 (454)
T cd07129 168 AGVFSLLQGGGREVGVALVKH--PAIKAVGFTGSR---RGGRALFDAAAARPEPIPFYA 221 (454)
T ss_pred hhheEEeeCCcHHHHHHHhcC--CCccEEEEeCCh---HHHHHHHHHhhccCccceeEe
Confidence 334777877542 23333332 578899999988 799999998887 4777765
No 151
>PRK08116 hypothetical protein; Validated
Probab=35.21 E-value=45 Score=33.79 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=26.0
Q ss_pred eEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 465 HVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 465 ~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
-++|.|...-+| ++.|||.+|+++|.+|++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~ 147 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIF 147 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 489999887678 899999999999998864
No 152
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=35.17 E-value=76 Score=35.12 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcC---cEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMG---IKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~---~~v~~ 494 (495)
| +=-+.+|.|..-.+.-.|-+- ++++.|.+||.+ ++|+.|+..++++. ++|++
T Consensus 216 P-~gvv~~v~g~~~~~~~~l~~~-~~v~~V~ftGs~---~~g~~v~~~aa~~~~~~~~v~l 271 (500)
T TIGR01238 216 P-AGTIQLLPGRGADVGAALTSD-PRIAGVAFTGST---EVAQLINQTLAQREDAPVPLIA 271 (500)
T ss_pred C-CCceEEEecCcchHHHHHhcC-CCcCeEEEECCH---HHHHHHHHHHhhcccCCceEEE
Confidence 5 444778887543333223232 368899999998 89999999998875 67764
No 153
>PRK08084 DNA replication initiation factor; Provisional
Probab=35.16 E-value=64 Score=31.76 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=35.6
Q ss_pred EEecCCchhhHhhhhcCCC-CCceEEEeccCCchh--HHHHHHHHHhhcCcEeee
Q 011017 443 KVVDGSSLAAAVVVNSLPK-TTAHVLLRGTVTANK--VANAVASSLCQMGIKVSF 494 (495)
Q Consensus 443 ~vv~g~~l~~a~v~~~ip~-~~~~v~l~g~~~~~k--~~~a~a~~lc~~~~~v~~ 494 (495)
=++.+|..+.+.+-+-... +...++++|....+| +++|+|.++|++|.+|..
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y 78 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGY 78 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 3445566655444332211 335789999877678 899999999999988864
No 154
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=35.14 E-value=81 Score=34.27 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=33.9
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
+=-+.+|.|+.-.+...|.+- ++++-|.+||++ ++|+.|+.+..+ +..+|++
T Consensus 181 ~g~v~~v~g~~~~~~~~l~~~-~~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~~l 233 (462)
T cd07112 181 AGVLNVVPGFGHTAGEALGLH-MDVDALAFTGST---EVGRRFLEYSGQSNLKRVWL 233 (462)
T ss_pred CCcEEEEeCCCchHHHHHhcC-CCcCEEEEECCH---HHHHHHHHHHHHhcCCEEEe
Confidence 445667777543222223222 378889999987 899999888774 6666654
No 155
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=35.12 E-value=66 Score=34.76 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred CcceEEecCC-chh-hHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGS-SLA-AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~-~l~-~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+ .-. +..++. -++++-|.+||++ ++|++|+...+++..||++
T Consensus 174 ~gvv~~v~g~~~~~~~~~l~~--~~~i~~v~ftGs~---~~g~~v~~~aa~~~~~~~l 226 (448)
T TIGR01780 174 KGVLNVITGSRAKEVGKVLCT--SPLVRKISFTGST---NVGKILMKQSASTVKKVSM 226 (448)
T ss_pred ccceEEEeCCCchHHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHhhcCCceEe
Confidence 3346777775 222 222211 2467889999998 8999999998888878765
No 156
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=35.10 E-value=43 Score=34.17 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=30.8
Q ss_pred hhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 454 VVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 454 ~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+-....++.+.|.-.|+++ +--|.|+|.+-.++|+++.+
T Consensus 47 ~l~~a~~~g~~~vv~~g~ss-GN~g~alA~~a~~~G~~~~i 86 (311)
T TIGR01275 47 LLADALSKGADTVITVGAIQ-SNHARATALAAKKLGLDAVL 86 (311)
T ss_pred HHHHHHHcCCCEEEEcCCch-hHHHHHHHHHHHHhCCceEE
Confidence 34445567778888877654 57799999999999999875
No 157
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=35.02 E-value=1.1e+02 Score=29.57 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.8
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+.|+++|+. +=+|.+++..+.++|++|..
T Consensus 140 ~~~vli~g~~--~~~g~~~~~~a~~~g~~v~~ 169 (323)
T cd08241 140 GETVLVLGAA--GGVGLAAVQLAKALGARVIA 169 (323)
T ss_pred CCEEEEEcCC--chHHHHHHHHHHHhCCEEEE
Confidence 3689999997 58999999999999999864
No 158
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=34.81 E-value=67 Score=35.36 Aligned_cols=49 Identities=6% Similarity=0.206 Sum_probs=33.9
Q ss_pred ceEEecCCc-hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcC------cEeee
Q 011017 441 KIKVVDGSS-LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMG------IKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~-l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~------~~v~~ 494 (495)
-+.+|+|.. -+.+.++. .++++.|.+||++ ++|++|+....++. .+|++
T Consensus 213 vv~~v~g~~~~~~~~L~~--~~~v~~v~ftGs~---~~g~~v~~~aa~~~~~~~~~~~v~l 268 (500)
T cd07083 213 VVQFLPGVGEEVGAYLTE--HERIRGINFTGSL---ETGKKIYEAAARLAPGQTWFKRLYV 268 (500)
T ss_pred ceEEEeCCCchhHHHHhc--CCCcCEEEEECcH---HHHHHHHHHHhhccccccccCcEEE
Confidence 367777642 22333332 4678899999998 89999999877763 67764
No 159
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=34.57 E-value=71 Score=34.32 Aligned_cols=53 Identities=25% Similarity=0.237 Sum_probs=34.9
Q ss_pred CcceEEecCCchhhHhhhhcC--CCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSL--PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~i--p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|..=....+.+.+ .++++.|++||++ ++|++|+....+++.+|.+
T Consensus 155 ~gv~~~v~g~~~~~~~~~~~l~~~~~v~~v~ftGs~---~~g~~i~~~aa~~~~~~~l 209 (432)
T cd07105 155 KGVLNVVTHSPEDAPEVVEALIAHPAVRKVNFTGST---RVGRIIAETAAKHLKPVLL 209 (432)
T ss_pred CCcEEEEeCCCCchHHHHHHHhcCCCCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 444566666421111122222 4578899999987 8999999998888888765
No 160
>PRK00124 hypothetical protein; Validated
Probab=34.53 E-value=2.6e+02 Score=26.47 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEec-CCchhhHhhhhcCCCCCceEEEeccCCchh
Q 011017 398 LIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVD-GSSLAAAVVVNSLPKTTAHVLLRGTVTANK 476 (495)
Q Consensus 398 ~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~-g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k 476 (495)
..|+.+.-|++.|++|+-.+-.|+.-. +...| ..+..+|+ |.--+=-.|+|.+-+| ++..|..-
T Consensus 12 Vk~~i~r~a~r~~i~v~~Vas~n~~~~--------~~~~~-~v~~v~V~~g~D~AD~~Iv~~~~~g--DiVIT~Di---- 76 (151)
T PRK00124 12 VKDIIIRVAERHGIPVTLVASFNHFLR--------VPYSP-FIRTVYVDAGFDAADNEIVQLAEKG--DIVITQDY---- 76 (151)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCcccC--------CCCCC-ceEEEEeCCCCChHHHHHHHhCCCC--CEEEeCCH----
Confidence 345666678999999999997777643 22334 56677776 5555556788888666 67888875
Q ss_pred HHHHHHHHHhhcCcEee
Q 011017 477 VANAVASSLCQMGIKVS 493 (495)
Q Consensus 477 ~~~a~a~~lc~~~~~v~ 493 (495)
-+|.-+-.||..|+
T Consensus 77 ---~LAa~~l~Kga~vl 90 (151)
T PRK00124 77 ---GLAALALEKGAIVL 90 (151)
T ss_pred ---HHHHHHHHCCCEEE
Confidence 35666677888775
No 161
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.37 E-value=77 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=36.1
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhc-CcEee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM-GIKVS 493 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~ 493 (495)
+..-|.|..|+-.+.=....++ ..|||-|++ ..+....+..|.++ |+++.
T Consensus 84 ~~~Rv~G~dl~~~ll~~~~~~~-~~v~llG~~--~~v~~~a~~~l~~~y~l~i~ 134 (243)
T PRK03692 84 QVSRVAGADLWEALMARAGKEG-TPVFLVGGK--PEVLAQTEAKLRTQWNVNIV 134 (243)
T ss_pred CCCeeChHHHHHHHHHHHHhcC-CeEEEECCC--HHHHHHHHHHHHHHhCCEEE
Confidence 3556678888877544333445 789999999 58888899998877 66653
No 162
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=34.27 E-value=76 Score=34.45 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=31.2
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|+.-.+...|-+ -++++.|.+||.+ ++|++|+....++..+|.+
T Consensus 180 ~g~~~~v~g~~~~~~~~l~~-~~~~~~v~ftGs~---~~g~~v~~~aa~~~~~~~l 231 (459)
T cd07089 180 AGVVNVVTGSDNAVGEALTT-DPRVDMVSFTGST---AVGRRIMAQAAATLKRVLL 231 (459)
T ss_pred ccceEEEecCcHHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHHhcCCcEEE
Confidence 33466777644321111111 2367788888887 7888888877676666654
No 163
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=34.15 E-value=33 Score=34.69 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHh
Q 011017 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAV 454 (495)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~ 454 (495)
..+++++.+..+.|-+||++.+..+--.--.+-....+..+ +.+|+|+|-.+..++.
T Consensus 65 ~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~-~~~i~ViDS~~~s~~~ 121 (275)
T TIGR00762 65 GEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD-EAKVTVIDSKSASMGL 121 (275)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC-CCCEEEECChHHHHHH
Confidence 45677777777788899999887765443333445555667 7899999988876653
No 164
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=34.00 E-value=82 Score=34.09 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=36.2
Q ss_pred cceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 440 LKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 440 l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
=-+-+|+|+.-+...++. + .++.|.+||.+ .+|+.|+....++.++|++
T Consensus 158 gvv~~v~g~~~~~~~L~~--~-~i~~v~fTGs~---~~g~~v~~~aa~~~~~~~l 206 (432)
T cd07137 158 KAIKVIEGGVPETTALLE--Q-KWDKIFFTGSP---RVGRIIMAAAAKHLTPVTL 206 (432)
T ss_pred CeEEEEeCCHHHHHHHHh--C-CCCEEEEECCh---HHHHHHHHHHHhcCCcEEE
Confidence 346788875434444444 3 48889999998 8999999988888888764
No 165
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=34.00 E-value=82 Score=34.79 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=35.8
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh------cCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ------MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~------~~~~v~~ 494 (495)
+=-+.+|.|..-.++-.|-+-| +++.|.+||.+ ++|++|+....+ +..+|++
T Consensus 223 ~gvv~vv~g~~~~~~~~L~~~~-~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~~l~~~~l 280 (512)
T cd07124 223 PGVVNFLPGPGEEVGDYLVEHP-DVRFIAFTGSR---EVGLRIYERAAKVQPGQKWLKRVIA 280 (512)
T ss_pred CCceEEeccCchHHHHHHhcCC-CCCEEEEeCch---HHHHHHHHHHhcccccccCCCcEEE
Confidence 3347778775433333333333 78899999998 899999998876 4667654
No 166
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=33.83 E-value=75 Score=30.91 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=19.4
Q ss_pred hcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 457 NSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 457 ~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+..|++.+=++|+|..+-.==|.++|.+|.+.|++|.+
T Consensus 40 ~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~V~~ 77 (205)
T TIGR00197 40 QAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVEVFL 77 (205)
T ss_pred HHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCEEEE
Confidence 33444333445555433233456666666666666653
No 167
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.35 E-value=90 Score=32.59 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCC
Q 011017 394 AINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVT 473 (495)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~ 473 (495)
|+.|-|+.|-..+.+.|-+|.+||-|=-|++ -|++.- ++.|++||. ++++|++ ..|+++.-.
T Consensus 14 GV~rAi~~a~~~~~~~~~~iytlG~iIHN~~-------vv~~L~-~~GV~~v~~--------~~~v~~~-~~ViirAHG- 75 (298)
T PRK01045 14 GVDRAIEIVERALEKYGAPIYVRHEIVHNRY-------VVERLE-KKGAIFVEE--------LDEVPDG-AIVIFSAHG- 75 (298)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEecCccCHH-------HHHHHH-HCCCEEecC--------cccCCCC-CEEEEeCCC-
Confidence 3455555554433345778999998755554 234444 556666663 3455543 234444222
Q ss_pred chhHHHHHHHHHhhcCcEe
Q 011017 474 ANKVANAVASSLCQMGIKV 492 (495)
Q Consensus 474 ~~k~~~a~a~~lc~~~~~v 492 (495)
+..++-..|-+||++|
T Consensus 76 ---v~~~~~~~~~~~g~~v 91 (298)
T PRK01045 76 ---VSPAVREEAKERGLTV 91 (298)
T ss_pred ---CCHHHHHHHHHCCCeE
Confidence 2344444555555554
No 168
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=33.34 E-value=73 Score=35.22 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=32.1
Q ss_pred CcceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHh------hcCcEeee
Q 011017 439 KLKIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLC------QMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc------~~~~~v~~ 494 (495)
+=-+.+|+|..- +...+++ - ++++-|.+||++ ++|++|+.... ++..+|++
T Consensus 224 ~gvv~vv~g~~~~~~~~L~~-~-~~v~~V~fTGs~---~~G~~i~~~aa~~~~~~~~~~~~~l 281 (511)
T TIGR01237 224 PGVFQFVPGKGSEVGSYLVN-H-PKTHLITFTGSR---EVGCRIYEDAAKVQPGQKHLKRVIA 281 (511)
T ss_pred CCcEEEccCCCchhHHHHhc-C-CCCCeEEEECch---HHHHHHHHHHhcccccccccceeEe
Confidence 334567776422 2222222 1 478899999998 89999987755 34556654
No 169
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=33.31 E-value=1.7e+02 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.-+.|+.+|+. + +|.+++..+..+|.+|..
T Consensus 134 ~~~~vli~g~~--~-~G~~~~~~a~~~g~~v~~ 163 (271)
T cd05188 134 PGDTVLVLGAG--G-VGLLAAQLAKAAGARVIV 163 (271)
T ss_pred CCCEEEEECCC--H-HHHHHHHHHHHcCCeEEE
Confidence 34579999998 7 999999999999988864
No 170
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=33.17 E-value=1.3e+02 Score=28.98 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=27.0
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.++++ +.|++.|+. +=+|.+++..+..+|++|..
T Consensus 133 ~~~~g-~~vlI~g~~--g~~g~~~~~~a~~~g~~v~~ 166 (320)
T cd05286 133 PVKPG-DTVLVHAAA--GGVGLLLTQWAKALGATVIG 166 (320)
T ss_pred CCCCC-CEEEEEcCC--chHHHHHHHHHHHcCCEEEE
Confidence 34444 679999986 46999999999999999864
No 171
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=33.10 E-value=45 Score=36.29 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=29.7
Q ss_pred hhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 456 VNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 456 ~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-.+.++..-+|...|+. =-|.+.|.+|.++|++|++
T Consensus 32 ~~~~~~~~~DViIVGaG---PAG~~aA~~LA~~G~~Vll 67 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGG---PAGACAAETLAKGGIETFL 67 (450)
T ss_pred CCCcCCCCCeEEEECCC---HHHHHHHHHHHhCCCcEEE
Confidence 34445555699999997 6799999999999999986
No 172
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=33.07 E-value=77 Score=30.23 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCceEEEeccCCchhHHH-HHHHHHhhcCcE
Q 011017 461 KTTAHVLLRGTVTANKVAN-AVASSLCQMGIK 491 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~-a~a~~lc~~~~~ 491 (495)
.+..+|+++|.. .+-+ ++..+|.++|+.
T Consensus 199 ~~~~~~~icGp~---~~~~~~~~~~l~~~G~~ 227 (234)
T cd06183 199 SEDTLVLVCGPP---PMIEGAVKGLLKELGYK 227 (234)
T ss_pred CCCeEEEEECCH---HHHHHHHHHHHHHcCCC
Confidence 355689999998 7788 999999999973
No 173
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=32.91 E-value=1.6e+02 Score=30.94 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEe-----cccccc----------ccccccceee-eccCCCCcceEEecCCchhhHhh
Q 011017 392 REAINSLIEEAILEADAKGVKVISL-----GLLNQG----------EELNRNGEIY-LERQPNKLKIKVVDGSSLAAAVV 455 (495)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~kv~sl-----~~ln~~----------~~ln~~g~~~-~~~~p~~l~~~vv~g~~l~~a~v 455 (495)
.-++|..|-.++..|.+.|.+|+.. |++|.. .-+|.||+.. ..|.| +.+ + .---..+
T Consensus 12 apGmNa~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~-~~~----~--~~~~~~~ 84 (317)
T cd00763 12 APGMNAAIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFP-EFK----D--EEGQAKA 84 (317)
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCC-ccC----C--HHHHHHH
Confidence 3579999999999999999999975 666631 2235566543 33554 222 1 0011122
Q ss_pred hhcCC-CCCceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 456 VNSLP-KTTAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 456 ~~~ip-~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
++.+- .+.+.++..|-.. ....|..|.+.|++|+
T Consensus 85 ~~~l~~~~Id~Li~IGGdg----s~~~a~~L~e~~i~vi 119 (317)
T cd00763 85 IEQLKKHGIDALVVIGGDG----SYMGAMRLTEHGFPCV 119 (317)
T ss_pred HHHHHHcCCCEEEEECCch----HHHHHHHHHHcCCCEE
Confidence 22222 3777788887763 2345556666788776
No 174
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=32.89 E-value=80 Score=30.69 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=29.8
Q ss_pred hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 450 LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 450 l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
++.+.+.+.+|.+..+|+++|.. .+-+++..+|-++|++
T Consensus 196 ~~~~~l~~~~~~~~~~v~icGp~---~m~~~v~~~l~~~G~~ 234 (247)
T cd06184 196 IDLALLRELLLPADADFYLCGPV---PFMQAVREGLKALGVP 234 (247)
T ss_pred cCHHHHhhccCCCCCEEEEECCH---HHHHHHHHHHHHcCCC
Confidence 34455555466666899999998 6779999999999984
No 175
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=32.88 E-value=37 Score=35.19 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=27.7
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..-++.+.|.-.|+++ +--|.|+|.+..++|+++.+
T Consensus 59 a~~~g~~~vvt~g~s~-gN~g~alA~~a~~~G~~~~i 94 (331)
T PRK03910 59 ALAQGADTLITAGAIQ-SNHARQTAAAAAKLGLKCVL 94 (331)
T ss_pred HHHcCCCEEEEcCcch-hHHHHHHHHHHHHhCCcEEE
Confidence 3345777887667544 57799999999999999875
No 176
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=32.51 E-value=1.6e+02 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=27.5
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.++++ +.|+++|+. +=+|.+++..+.++|++|.+
T Consensus 141 ~~~~g-~~vlI~g~~--~~~g~~~~~~a~~~g~~v~~ 174 (325)
T cd08253 141 GAKAG-ETVLVHGGS--GAVGHAAVQLARWAGARVIA 174 (325)
T ss_pred CCCCC-CEEEEEcCC--chHHHHHHHHHHHcCCEEEE
Confidence 34444 689999987 46999999999999999864
No 177
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=31.97 E-value=79 Score=34.74 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=29.2
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-+... |-+ -++++.|.+||++ .+|++|+....+++.+|.+
T Consensus 207 v~~v~g~~~~~~~-l~~-~~~v~~v~ftGs~---~~g~~v~~~aa~~~~~~~l 254 (480)
T cd07111 207 LNIVTGNGSFGSA-LAN-HPGVDKVAFTGST---EVGRALRRATAGTGKKLSL 254 (480)
T ss_pred EEEEeCCchHHHH-Hhc-CCCcCEEEEECCH---HHHHHHHHHHhccCCcEEE
Confidence 5666665422222 212 2367778888887 7788888777666666653
No 178
>PRK06199 ornithine cyclodeaminase; Validated
Probab=31.85 E-value=1.2e+02 Score=32.61 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=58.2
Q ss_pred HhcCCeEEEeccccccccccccceeeeccCC-CCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhH
Q 011017 407 DAKGVKVISLGLLNQGEELNRNGEIYLERQP-NKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKV 477 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p-~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~ 477 (495)
+..|+|++|.--=|....|...-.+++--+| +..-.=++||+.||+ |+-.+-+ +++.+.+-+.|+. ..
T Consensus 90 ~~~gvK~v~~~p~N~~~glp~~~g~v~L~D~~TG~p~Ai~dg~~lTa~RTaA~salaa~~LAr~da~~l~iiG~G---~Q 166 (379)
T PRK06199 90 RTAGVKWYGSNIANREKGLPRSILMFVLNDADTGAPLAIMSANLLSAYRTGAVPGVGARHLARKDSKVVGLLGPG---VM 166 (379)
T ss_pred ceeEEEEeccCCCccccCCCceeEEEEEeeCCCCceEEEEcCcchhhhHHHHHHHHHHHHhccCCCCEEEEECCc---HH
Confidence 3478999998766776555554445554455 366677899999974 3345556 7899999999997 88
Q ss_pred HHHHHHHHhh
Q 011017 478 ANAVASSLCQ 487 (495)
Q Consensus 478 ~~a~a~~lc~ 487 (495)
||.-+.++|+
T Consensus 167 A~~~l~a~~~ 176 (379)
T PRK06199 167 GKTILAAFMA 176 (379)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 179
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=31.59 E-value=88 Score=34.81 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=32.6
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHH--hhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL--CQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~l--c~~~~~v~~ 494 (495)
+.+|.|+. +.+...+| +++.|.+||++ ++|+.|+... .+++.+|.+
T Consensus 205 ~~~v~g~~---~~~~~~l~-~~d~v~fTGS~---~~G~~i~~~a~~a~~~~~~~l 252 (513)
T cd07128 205 LQLICGSV---GDLLDHLG-EQDVVAFTGSA---ATAAKLRAHPNIVARSIRFNA 252 (513)
T ss_pred EEEecCCh---HHHhcccC-CCCEEEEECCH---HHHHHHHHHhhhhccCceEEE
Confidence 66677652 22444444 56789999998 9999999874 377788764
No 180
>PF10991 DUF2815: Protein of unknown function (DUF2815); InterPro: IPR022595 This entry is represented by Bacteriophage APSE-1, protein 50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.45 E-value=80 Score=30.64 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=42.0
Q ss_pred eeccCceeccchhhhhhHHHHHHHHHHHHhcCC-eEEEecccc--------cccccc---c---cceeeeccCCCCcceE
Q 011017 379 VPRYIVQYNLPWRREAINSLIEEAILEADAKGV-KVISLGLLN--------QGEELN---R---NGEIYLERQPNKLKIK 443 (495)
Q Consensus 379 ~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~-kv~sl~~ln--------~~~~ln---~---~g~~~~~~~p~~l~~~ 443 (495)
=|+|+....+|.....-.+.||+||.+|-+.|. +..-.+.+. .++.-. + .|..|++..- +-|-.
T Consensus 27 ~~KYs~t~lipK~d~~t~~~I~~Ai~~a~~~~~~~k~~~~~~~~~~k~plrDGD~~~~~d~~~y~g~~~i~A~s-k~~P~ 105 (181)
T PF10991_consen 27 EPKYSATLLIPKSDKETIAAIKAAIEAAIEEGWGNKWKGKKIPANLKLPLRDGDEKRPSDGEEYEGHYFINASS-KKRPG 105 (181)
T ss_pred CcceeEEEEEcCCCHHHHHHHHHHHHHHHHhcccccccccccCccccccccCCCcccCCCCcccCccEEEecCC-CCCCe
Confidence 688999999987666555677778887766665 221122211 111111 1 3567776555 55778
Q ss_pred EecCCc
Q 011017 444 VVDGSS 449 (495)
Q Consensus 444 vv~g~~ 449 (495)
|||.+.
T Consensus 106 vvD~~~ 111 (181)
T PF10991_consen 106 VVDRQK 111 (181)
T ss_pred EEcCCC
Confidence 888765
No 181
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.37 E-value=78 Score=31.91 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.0
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=++|+|..+-.==|.++|.+|.++|++|.+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v 92 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTV 92 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEE
Confidence 3457777554345688999999999999875
No 182
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=31.21 E-value=57 Score=33.90 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=30.7
Q ss_pred hhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 455 VVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 455 v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+-+-.-++.+.|.=+|+++ +--|+|+|.+-.++|+++.+
T Consensus 59 l~~a~~~G~~~vvs~G~s~-GN~g~alA~aa~~~G~~~~i 97 (337)
T PRK12390 59 VPDALAQGADTLVSIGGVQ-SNHTRQVAAVAAHLGMKCVL 97 (337)
T ss_pred HHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHHcCCeEEE
Confidence 3334466888888777766 67899999999999999875
No 183
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.00 E-value=81 Score=32.81 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=35.2
Q ss_pred hhhHhhhh-----cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~-----~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+. .|+-.-|.|.+.|.+ .-+|+.+|..|.++|..|.+
T Consensus 140 cTp~ai~~ll~~~~i~~~Gk~V~viGrs--~~mG~PmA~~L~~~g~tVtv 187 (296)
T PRK14188 140 CTPLGCMMLLRRVHGDLSGLNAVVIGRS--NLVGKPMAQLLLAANATVTI 187 (296)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEEcCC--cchHHHHHHHHHhCCCEEEE
Confidence 35666663 456678899999988 58999999999999999976
No 184
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=30.92 E-value=99 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=34.0
Q ss_pred ceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|+.- +...++ =.++++-|.+||++ ++|+.|+...+++..+|++
T Consensus 130 v~~~v~g~~~~~~~~l~--~~~~v~~V~ftGs~---~~g~~v~~~aa~~~~~~~l 179 (409)
T PRK10090 130 VFNLVLGRGETVGQELA--GNPKVAMVSMTGSV---SAGEKIMAAAAKNITKVCL 179 (409)
T ss_pred cEEEEeCCChhHHHHHh--cCCCcCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 3677777432 222222 13578889999987 8999999988888878764
No 185
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=30.89 E-value=1.4e+02 Score=31.02 Aligned_cols=82 Identities=20% Similarity=0.118 Sum_probs=50.7
Q ss_pred HhcCCeEEEeccccccccccccceeeeccCCC-CcceEE-ecCCchhh-------HhhhhcC-CCCCceEEEeccCCchh
Q 011017 407 DAKGVKVISLGLLNQGEELNRNGEIYLERQPN-KLKIKV-VDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~-~l~~~v-v~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k 476 (495)
+..|+|+++-=--|....|-..-.+.+--.|. +--.-+ .||+.||+ |+-...+ +++.+.|.+.|+. .
T Consensus 63 ~~~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~lT~~RTaa~~~laa~~la~~~~~~v~iiGaG---~ 139 (326)
T TIGR02992 63 DGFAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYLTDVRTAAAGAVAARHLAREDSSVVAIFGAG---M 139 (326)
T ss_pred CceEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC---H
Confidence 44789998854445543443333333334441 211233 49988864 1222223 6788999999997 8
Q ss_pred HHHHHHHHHh-hcCcE
Q 011017 477 VANAVASSLC-QMGIK 491 (495)
Q Consensus 477 ~~~a~a~~lc-~~~~~ 491 (495)
.||+.+.+|| .++++
T Consensus 140 qA~~~~~al~~~~~i~ 155 (326)
T TIGR02992 140 QARLQLEALTLVRDIR 155 (326)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999 47764
No 186
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=30.86 E-value=59 Score=32.24 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=25.0
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
-+.|.+.|-. +||+.+|..|.++|.+|+
T Consensus 31 ~~~v~I~G~G---~VG~~~a~~L~~~g~~vv 58 (227)
T cd01076 31 GARVAIQGFG---NVGSHAARFLHEAGAKVV 58 (227)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHCCCEEE
Confidence 4788889965 999999999999999997
No 187
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=30.76 E-value=57 Score=31.62 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCeE--EEeccc--c-cccccc--ccceeeeccCCCCcceEEecCCchhhHhhhhc-CCCCCceEE
Q 011017 396 NSLIEEAILEADAKGVKV--ISLGLL--N-QGEELN--RNGEIYLERQPNKLKIKVVDGSSLAAAVVVNS-LPKTTAHVL 467 (495)
Q Consensus 396 n~~ie~ai~~a~~~g~kv--~sl~~l--n-~~~~ln--~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~-ip~~~~~v~ 467 (495)
+..+++|+..|++.|.+| +.+|.= + ..+++. |-.++|+-.+| .+.- -+.-..|-++.+ |-+.--+++
T Consensus 38 ~~~l~ea~~la~~~g~~v~av~~G~~~~~~~~~~l~~~G~d~V~~~~~~-~~~~----~~~e~~a~al~~~i~~~~p~lV 112 (202)
T cd01714 38 EYAVEEALRLKEKYGGEVTVVSMGPPQAEEALREALAMGADRAILVSDR-AFAG----ADTLATAKALAAAIKKIGVDLI 112 (202)
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCHHHHHHHHHHHHcCCCEEEEEecc-cccC----CChHHHHHHHHHHHHHhCCCEE
Confidence 345556777777777554 444421 1 123444 33468877777 3321 233332222222 222124678
Q ss_pred EeccCCchhHHHHHHHHHhhc
Q 011017 468 LRGTVTANKVANAVASSLCQM 488 (495)
Q Consensus 468 l~g~~~~~k~~~a~a~~lc~~ 488 (495)
|.|+++.+|-||-+|-.|+.|
T Consensus 113 L~~~t~~~~~grdlaprlAar 133 (202)
T cd01714 113 LTGKQSIDGDTGQVGPLLAEL 133 (202)
T ss_pred EEcCCcccCCcCcHHHHHHHH
Confidence 999886555677777666543
No 188
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=30.54 E-value=92 Score=34.10 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=32.1
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhc-CcEee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM-GIKVS 493 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~ 493 (495)
+=-+.+|.|+.-++..+++ -++++-|.+||++ ++|+.|+.+.+++ ..+|.
T Consensus 189 ~gvv~~v~g~~~~~~~L~~--~~~vd~V~fTGS~---~~G~~i~~~aa~~~~~~~~ 239 (484)
T TIGR03240 189 AGVLNLVQGARETGVALAA--HPDIDGLLFTGSS---NTGHLLHRQFAGRPEKILA 239 (484)
T ss_pred cccEEEEeCCHHHHHHHhc--CCCCCEEEEECCH---HHHHHHHHHhhhcCCCcEE
Confidence 4445666664323332222 2378889999998 8999999987766 34454
No 189
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=30.20 E-value=1e+02 Score=33.19 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++-|.+||.+ ++|++|+....++..+|++
T Consensus 188 ~~v~~V~fTGs~---~~g~~i~~~aa~~~~~~~l 218 (443)
T cd07152 188 PNVAMISFTGST---AVGRKVGEAAGRHLKKVSL 218 (443)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 367777777776 6777777766666666543
No 190
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.16 E-value=56 Score=28.29 Aligned_cols=40 Identities=8% Similarity=0.098 Sum_probs=29.2
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccce
Q 011017 390 WRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGE 430 (495)
Q Consensus 390 ~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~ 430 (495)
....+=|+.+.+++..|.++|+||+++-.-.. ..|-+...
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~-s~la~~ad 93 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPN-STLAKLSD 93 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC-CchhhhCC
Confidence 34556788999999999999999999976433 33444443
No 191
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=30.00 E-value=1.3e+02 Score=30.35 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=62.3
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEecc-----------ccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcC
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLGL-----------LNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSL 459 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~~-----------ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~i 459 (495)
..+...+.|++++.+.-+.|...|.||= +.+.. .+=|-+.++.|+ |++- =.+|+.+..+..+..+
T Consensus 74 ~~~~~~~~i~~~v~~~~~~~~~pi~lGGdHsis~~~i~al~~~~--~~~~vI~~DAH~-D~~~-~~~g~~~~~~~~~~~~ 149 (275)
T TIGR01230 74 DAREMFEKIQEHAEEFLEEGKFPVAIGGEHSITLPVIRAMAKKF--GKFAVVHFDAHT-DLRD-EFDGGTLNHACPMRRV 149 (275)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCcchhhHHHHHHHHHhc--CCeEEEEEeccc-cccc-ccCCCccccHhHHHHH
Confidence 3456778899999999999999998862 33322 345899999999 9874 2467766666655554
Q ss_pred CCCCceEEEeccCCchhHHHHHHHHHhhcCcEe
Q 011017 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKV 492 (495)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v 492 (495)
-+.-++|+..|.-+.++ .=..+..+.|+++
T Consensus 150 ~~~~~~iv~iGiR~~~~---~e~~~~~~~~~~~ 179 (275)
T TIGR01230 150 IELGLNVVQFGIRSGFK---EENDFARENNIQV 179 (275)
T ss_pred hhCCCCEEEEEeCCCCh---HHHHHHHHcCCEE
Confidence 33224788888775333 2223444556655
No 192
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=29.98 E-value=1e+02 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++.|.+||++ ++|+.|+....++..+|++
T Consensus 173 ~~i~~v~fTGs~---~~g~~i~~~aa~~~~~~~l 203 (429)
T cd07100 173 PRVRGVTLTGSE---RAGRAVAAEAGKNLKKSVL 203 (429)
T ss_pred CCCCEEEEECcH---HHHHHHHHHHhhcCcceEE
Confidence 467788888887 7888888887777777754
No 193
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=29.67 E-value=53 Score=34.68 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCCCCceEEE-eccCCchhHHHHHHHHHhhcCcEeee
Q 011017 459 LPKTTAHVLL-RGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 459 ip~~~~~v~l-~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..++.+.|+. +|+. --|+|+|.+-.++|+++.+
T Consensus 78 ~~~g~~~vv~~~ssG---N~g~alA~~a~~~G~~~~i 111 (365)
T cd06446 78 KRMGKKRVIAETGAG---QHGVATATACALFGLECEI 111 (365)
T ss_pred HHcCCCeEEEecCch---HHHHHHHHHHHHhCCCeEE
Confidence 3566677776 3443 3799999999999999875
No 194
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=29.61 E-value=2.1e+02 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=10.4
Q ss_pred hhhhccccccccccc
Q 011017 154 YLYSRYHSHHHSSVV 168 (495)
Q Consensus 154 ~Ly~riHk~HHss~~ 168 (495)
..++.-|..||..++
T Consensus 49 ~~w~~~H~~HH~~tn 63 (204)
T cd03506 49 GWWKNKHNVHHAYTN 63 (204)
T ss_pred HHHHHHHhhhcCcCC
Confidence 345667888888865
No 195
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=29.52 E-value=1.1e+02 Score=33.29 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-+... |-+ .++++-|.+||++ .+|+.|+....+++.+|++
T Consensus 184 v~~v~g~~~~~~~-L~~-~~~v~~V~ftGs~---~~g~~v~~~a~~~~~~~~l 231 (465)
T cd07098 184 VQLVTCLPETAEA-LTS-HPVIDHITFIGSP---PVGKKVMAAAAESLTPVVL 231 (465)
T ss_pred EEEEECCHHHHHH-Hhc-CCCCCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 6677775422222 221 3467888889887 7888888888888888764
No 196
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.51 E-value=81 Score=32.43 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=26.3
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.|++.|.. .+|+++|..|.+.|.+|.+
T Consensus 152 g~kvlViG~G---~iG~~~a~~L~~~Ga~V~v 180 (296)
T PRK08306 152 GSNVLVLGFG---RTGMTLARTLKALGANVTV 180 (296)
T ss_pred CCEEEEECCc---HHHHHHHHHHHHCCCEEEE
Confidence 4799999986 8999999999999999875
No 197
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=29.49 E-value=1.1e+02 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=15.5
Q ss_pred EeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 468 LRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 468 l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.||... .|| .| |..+++.|++|.+
T Consensus 207 ~tGGm~-~Kl-~a-a~~a~~~Gv~v~I 230 (252)
T cd04241 207 VTGGMA-GKI-EE-LLELARRGIEVYI 230 (252)
T ss_pred ccCCHH-HHH-HH-HHHHHhcCCeEEE
Confidence 455443 566 33 6677788999764
No 198
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=29.48 E-value=1e+02 Score=31.58 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=20.9
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
-|.|++.|+. =.|||||.+|.+.|++
T Consensus 127 ~k~vlilGaG---GaarAi~~aL~~~g~~ 152 (283)
T PRK14027 127 LDSVVQVGAG---GVGNAVAYALVTHGVQ 152 (283)
T ss_pred CCeEEEECCc---HHHHHHHHHHHHCCCC
Confidence 4678888887 3589999999988874
No 199
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=29.43 E-value=92 Score=32.77 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.9
Q ss_pred hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 450 LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 450 l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
++.+.+.+.+|....+|++||.. ..-+++...|.++|+.
T Consensus 345 i~~~~l~~~~~~~~~~vyiCGp~---~m~~~v~~~L~~~Gv~ 383 (399)
T PRK13289 345 MDLEWLEAWLPDPDADFYFCGPV---PFMQFVAKQLLELGVP 383 (399)
T ss_pred ccHHHHHhhCCCCCCEEEEECCH---HHHHHHHHHHHHcCCC
Confidence 44455555566445689999998 7889999999999984
No 200
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=29.25 E-value=57 Score=36.32 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=27.7
Q ss_pred CCC-CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 460 PKT-TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 460 p~~-~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.+ .+.|..+|.. ++|+.+|..|.++|++|++
T Consensus 413 ~~~~~~hiiI~G~G---~~G~~la~~L~~~g~~vvv 445 (558)
T PRK10669 413 PVDICNHALLVGYG---RVGSLLGEKLLAAGIPLVV 445 (558)
T ss_pred ccccCCCEEEECCC---hHHHHHHHHHHHCCCCEEE
Confidence 444 4789999997 9999999999999999875
No 201
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=29.23 E-value=83 Score=30.95 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC----------------------eEEEeccccccccc----ccc--------ceeeeccCCCCcc
Q 011017 396 NSLIEEAILEADAKGV----------------------KVISLGLLNQGEEL----NRN--------GEIYLERQPNKLK 441 (495)
Q Consensus 396 n~~ie~ai~~a~~~g~----------------------kv~sl~~ln~~~~l----n~~--------g~~~~~~~p~~l~ 441 (495)
|+.+++||.+|.++|+ .||+-|+.|++.++ |.| |+-.....| +-.
T Consensus 106 ~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di~ApG~~i~~~~~-~~~ 184 (239)
T cd05561 106 NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAP-GGG 184 (239)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceEEccccceecccC-CCC
Q ss_pred eEEecCCchhhHhh
Q 011017 442 IKVVDGSSLAAAVV 455 (495)
Q Consensus 442 ~~vv~g~~l~~a~v 455 (495)
.+.+.|+|++|+.|
T Consensus 185 ~~~~sGTS~AaP~v 198 (239)
T cd05561 185 YRYVSGTSFAAPFV 198 (239)
T ss_pred EEEeCCHHHHHHHH
No 202
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=29.06 E-value=1e+02 Score=33.68 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=32.4
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.+|.|+.-.+.-.|-+ -++++-|.+||++ ++|++|+....++..+|++
T Consensus 195 v~~v~g~~~~~~~~l~~-~~~v~~V~fTGS~---~~G~~i~~~aa~~l~~~~l 243 (488)
T TIGR02299 195 FNLVHGFGEEAGKALVA-HPDVKAVSFTGET---ATGSIIMRNGADTLKRFSM 243 (488)
T ss_pred eeEEeCCchHHHHHHhc-CCCcCEEEEECcH---HHHHHHHHHHHhcCCeEEE
Confidence 66676643222111211 3467889999988 8999998887777777764
No 203
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=29.05 E-value=1.1e+02 Score=33.47 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+++.|.+||++ ++|++|+....++..+|.+
T Consensus 204 ~v~~V~fTGs~---~~G~~i~~~aa~~l~~~~l 233 (462)
T PRK13968 204 RIAAVTVTGSV---RAGAAIGAQAGAALKKCVL 233 (462)
T ss_pred CCCEEEEECCH---HHHHHHHHHHhhcCCcEEE
Confidence 58889999997 8999999888787777764
No 204
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=28.96 E-value=37 Score=36.41 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=53.0
Q ss_pred eeEEeeccCceeccchhhhhh-----------HHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceE
Q 011017 375 QTWVVPRYIVQYNLPWRREAI-----------NSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIK 443 (495)
Q Consensus 375 ~~w~~pr~~~~y~~~~~~~~i-----------n~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~ 443 (495)
+|+.|=|||+.-.||..-|=| ...|.+||.-|.+.||-+.++|-+-+--- ..|.|.-.|-- .-+||
T Consensus 43 Ht~aI~r~Gir~LLp~~IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPG--s~~SL~~ara~-GadVr 119 (369)
T TIGR00075 43 HTHTIMKYGLRDLLPENLELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPG--SGGSLLQARAE-GADVR 119 (369)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCC--CCCCHHHHHhC-CCCEE
Confidence 899999999988888776544 47899999999999999999998776553 23345444555 66777
Q ss_pred Eec
Q 011017 444 VVD 446 (495)
Q Consensus 444 vv~ 446 (495)
||-
T Consensus 120 iVY 122 (369)
T TIGR00075 120 IVY 122 (369)
T ss_pred EEe
Confidence 775
No 205
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=28.85 E-value=1.4e+02 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.9
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+.|+++|+. +=+|++++..+..+|.+|.+
T Consensus 140 ~~~vlv~g~~--~~ig~~~~~~~~~~g~~v~~ 169 (323)
T cd05276 140 GETVLIHGGA--SGVGTAAIQLAKALGARVIA 169 (323)
T ss_pred CCEEEEEcCc--ChHHHHHHHHHHHcCCEEEE
Confidence 3689999987 46999999999999999864
No 206
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=28.84 E-value=1e+02 Score=33.17 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++-|.+||.+ ++|++|+....++..+|.+
T Consensus 197 ~~v~~V~ftGs~---~~g~~i~~~aa~~~~~~~l 227 (451)
T cd07150 197 PRVRMVTFTGST---AVGREIAEKAGRHLKKITL 227 (451)
T ss_pred CCCCEEEEECcH---HHHHHHHHHHhhcCCceEe
Confidence 456788888887 7888888887777777654
No 207
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=28.78 E-value=1e+02 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEe
Q 011017 399 IEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVV 445 (495)
Q Consensus 399 ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv 445 (495)
||+++.++.+.|++++. . ...-+.|+.-+.-++|++-++++.
T Consensus 68 ~~~~~~~l~~~G~~~~~-~----~~~~~~g~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 68 VDAALARAVAAGFAIVY-G----PTDEPWGVRRFFVRDPFGKLVNIL 109 (112)
T ss_pred HHHHHHHHHhcCCeEec-C----CccCCCceEEEEEECCCCCEEEEE
Confidence 66777788999999875 1 122234445666789966666664
No 208
>PRK08291 ectoine utilization protein EutC; Validated
Probab=28.57 E-value=1.7e+02 Score=30.32 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=48.9
Q ss_pred HhcCCeEEEeccccccccccc-cceeeeccCCCCcceE-E-ecCCchhh-----Hhhhh--cC-CCCCceEEEeccCCch
Q 011017 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIK-V-VDGSSLAA-----AVVVN--SL-PKTTAHVLLRGTVTAN 475 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p~~l~~~-v-v~g~~l~~-----a~v~~--~i-p~~~~~v~l~g~~~~~ 475 (495)
+..|+|+++----|....|-. .|.+.+. .|..=.+. + .||+.||+ +..+. .+ +++.+.|.+.|+.
T Consensus 66 ~~~g~K~~~~~~~N~~~glp~~~g~i~l~-d~~tG~~~ai~~d~~~lt~~rT~a~~~~a~~~la~~~~~~v~IiGaG--- 141 (330)
T PRK08291 66 DSFAIKVSPGFFDNPKLGLPSLNGLMVVL-SARTGLVEALLLDNGYLTDVRTAAAGAVAARHLAREDASRAAVIGAG--- 141 (330)
T ss_pred CeeEEEeccCCCCccccCCCcceEEEEEE-eCCCCceEEEEcCCchHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC---
Confidence 347888887544454433332 2444443 34112233 2 48988874 11111 12 6788899999997
Q ss_pred hHHHHHHHHHhh-cCcE
Q 011017 476 KVANAVASSLCQ-MGIK 491 (495)
Q Consensus 476 k~~~a~a~~lc~-~~~~ 491 (495)
..|++++.+|++ ++++
T Consensus 142 ~~a~~~~~al~~~~~~~ 158 (330)
T PRK08291 142 EQARLQLEALTLVRPIR 158 (330)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 889999999995 6654
No 209
>PRK06823 ornithine cyclodeaminase; Validated
Probab=28.40 E-value=1.7e+02 Score=30.54 Aligned_cols=77 Identities=22% Similarity=0.129 Sum_probs=52.2
Q ss_pred HhcCCeEEEeccccccccccc-cceeeeccCCCCcceE-Ee-cCCchhh-------HhhhhcC-CCCCceEEEeccCCch
Q 011017 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQPNKLKIK-VV-DGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTAN 475 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p~~l~~~-vv-~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~ 475 (495)
+-.|+|++|.--=|....|-. .|.+.+. +|..-+.. +. ||+.||+ |+-.+-+ +++.+.+-+.|+.
T Consensus 62 ~~~g~K~v~~~p~N~~~glP~~~g~v~l~-d~~TG~p~Ail~d~~~lT~~RTaA~sala~~~La~~d~~~l~iiG~G--- 137 (315)
T PRK06823 62 DQFVVKVSTGFYDNPAQGLPSNQGLMLAF-SAKTGEPQALLLDEGWLTALRTALAGRIVARLLAPQHVSAIGIVGTG--- 137 (315)
T ss_pred CeEEEEEEeecCCCccCCCCCeeEEEEEE-ECCCCceEEEEcCCChHHHHHHHHHHHHHHHHhcCCCCCEEEEECCc---
Confidence 347899998766666544422 3444444 55334445 54 9999974 2233444 7899999999997
Q ss_pred hHHHHHHHHHhh
Q 011017 476 KVANAVASSLCQ 487 (495)
Q Consensus 476 k~~~a~a~~lc~ 487 (495)
..|+.-+.++|+
T Consensus 138 ~qA~~~~~a~~~ 149 (315)
T PRK06823 138 IQARMQLMYLKN 149 (315)
T ss_pred HHHHHHHHHHHh
Confidence 899999999885
No 210
>PLN02884 6-phosphofructokinase
Probab=28.33 E-value=1.6e+02 Score=32.04 Aligned_cols=90 Identities=18% Similarity=0.347 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHHhcCC-eEEEe-----cccccc--c------cc----ccccee-eeccCCCCcceEEecCCchhh
Q 011017 392 REAINSLIEEAILEADAKGV-KVISL-----GLLNQG--E------EL----NRNGEI-YLERQPNKLKIKVVDGSSLAA 452 (495)
Q Consensus 392 ~~~in~~ie~ai~~a~~~g~-kv~sl-----~~ln~~--~------~l----n~~g~~-~~~~~p~~l~~~vv~g~~l~~ 452 (495)
.-++|..|..++..|..+|+ +|+.. |++|.. + .+ +.||++ -..|.+ . . -
T Consensus 65 aPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~-~--------~---~ 132 (411)
T PLN02884 65 CPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGG-A--------K---T 132 (411)
T ss_pred CccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCC-c--------c---H
Confidence 34899999999999999999 79964 777765 1 11 334543 333544 1 1 1
Q ss_pred HhhhhcCC-CCCceEEEeccCCchhHHHHHHHHHhhcC--cEee
Q 011017 453 AVVVNSLP-KTTAHVLLRGTVTANKVANAVASSLCQMG--IKVS 493 (495)
Q Consensus 453 a~v~~~ip-~~~~~v~l~g~~~~~k~~~a~a~~lc~~~--~~v~ 493 (495)
.-+++.+- .+.+.++..|-..--+-+..++.+..++| ++|+
T Consensus 133 ~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vI 176 (411)
T PLN02884 133 SDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVV 176 (411)
T ss_pred HHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEE
Confidence 22334443 38888888877642344556666666678 7775
No 211
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=28.16 E-value=82 Score=32.05 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=31.7
Q ss_pred hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 451 AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 451 ~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
+|+-|+++ .+.+.|=+-|.. |-.--++..||+|||.|+
T Consensus 121 nAv~vmk~--~g~~~vK~EgGs---~~~~~~~~~l~ergipV~ 158 (306)
T KOG2949|consen 121 NAVRVMKE--GGMDAVKLEGGS---NSRITAAKRLVERGIPVM 158 (306)
T ss_pred HHHHHHHh--cCCceEEEccCc---HHHHHHHHHHHHcCCcee
Confidence 46667877 788889888875 677788999999999986
No 212
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=28.05 E-value=1.2e+02 Score=32.87 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|+|+.-+...++. .++++-|.+||++ ++|+.|+....++..+|.+
T Consensus 193 P-~gv~~~v~g~~~~~~~l~~--~~~i~~v~ftGs~---~~g~~v~~~~~~~~~~~~l 244 (471)
T cd07139 193 P-PGVVNVVPADREVGEYLVR--HPGVDKVSFTGST---AAGRRIAAVCGERLARVTL 244 (471)
T ss_pred C-CCcEEEEeCCHHHHHHHhc--CCCCCEEEEECcH---HHHHHHHHHHHhcCCEEEE
Confidence 5 4446777775322222222 3468889999988 8899998887777677654
No 213
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=27.85 E-value=99 Score=34.33 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=32.9
Q ss_pred ceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|+|+.- +...++. +++-|.+||.+ ++|++|+....++.++|.+
T Consensus 213 vv~~v~g~~~~~~~~L~~----~~d~V~fTGs~---~~g~~v~~~aa~~~~~v~l 260 (524)
T PRK09407 213 LWQVVTGPGPVVGTALVD----NADYLMFTGST---ATGRVLAEQAGRRLIGFSL 260 (524)
T ss_pred cEEEEecCCchHHHHHHh----cCCEEEEECCH---HHHHHHHHHHHhcCCcEEE
Confidence 3777877532 3333333 25679999998 8999999887777777764
No 214
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=27.78 E-value=2.1e+02 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.|++.|+. +-+|.+++..+..+|++|..
T Consensus 110 ~~vlv~g~~--g~~g~~~~~~a~~~g~~v~~ 138 (293)
T cd05195 110 ESVLIHAAA--GGVGQAAIQLAQHLGAEVFA 138 (293)
T ss_pred CEEEEecCC--CHHHHHHHHHHHHcCCEEEE
Confidence 578888877 58999999999999999864
No 215
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=27.77 E-value=75 Score=34.99 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=31.6
Q ss_pred cCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
||.....+.=-+.++..-+.|+++|+. -+|+|+|.+|.+.|.+|.+
T Consensus 315 D~~G~~~~l~~~~~~~~~k~vlIiGaG---giG~aia~~L~~~G~~V~i 360 (477)
T PRK09310 315 DGEGLFSLLKQKNIPLNNQHVAIVGAG---GAAKAIATTLARAGAELLI 360 (477)
T ss_pred CHHHHHHHHHhcCCCcCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEE
Confidence 444444333222233345689999975 8999999999999998865
No 216
>PRK09929 hypothetical protein; Provisional
Probab=27.72 E-value=70 Score=27.79 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHH-HHHhcCCeEEEeccccccccccccceeeecc
Q 011017 399 IEEAIL-EADAKGVKVISLGLLNQGEELNRNGEIYLER 435 (495)
Q Consensus 399 ie~ai~-~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~ 435 (495)
+|++|. .||+.|++-.-.=.-|.+..+.+.-++|-+|
T Consensus 54 ~~~~La~KAd~~GA~yY~Ii~a~~~n~~h~tA~IYkk~ 91 (91)
T PRK09929 54 AKEDLIKKADEKGADVLVLTSGQTDNKIHGTADIYKKK 91 (91)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCcEEEEEEeeecC
Confidence 566666 7999999843332235555677888888654
No 217
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=27.52 E-value=63 Score=33.03 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 460 PKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 460 p~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-++.+.|.-.|.++ +--|.|+|.+..++|+++.+
T Consensus 49 ~~g~~~vv~~ggs~-GN~g~alA~~a~~~G~~~~i 82 (307)
T cd06449 49 AKGADTLVTVGGIQ-SNHTRQVAAVAAKLGLKCVL 82 (307)
T ss_pred HcCCCEEEECCCch-hHHHHHHHHHHHHcCCeEEE
Confidence 35666666665443 57899999999999999875
No 218
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=27.19 E-value=1.2e+02 Score=32.58 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+++-|++||.+ .+|+.|+....+++.++++
T Consensus 196 ~v~~V~fTGs~---~~g~~v~~~a~~~~~~~~l 225 (450)
T cd07092 196 RVRMVSLTGSV---RTGKKVARAAADTLKRVHL 225 (450)
T ss_pred CCCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 56777777776 6777777776666666543
No 219
>PRK10565 putative carbohydrate kinase; Provisional
Probab=27.18 E-value=96 Score=34.56 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=27.4
Q ss_pred hhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 455 VVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 455 v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
|.+..|+..+=++++|..+-.==|.++|.+|.++|++|.+
T Consensus 53 i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v 92 (508)
T PRK10565 53 ARSAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGIDVTL 92 (508)
T ss_pred HHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCceEE
Confidence 4445555444456777554355688999999999998865
No 220
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=27.01 E-value=48 Score=29.12 Aligned_cols=45 Identities=36% Similarity=0.403 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCch
Q 011017 397 SLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSL 450 (495)
Q Consensus 397 ~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l 450 (495)
+.||+|+.+|+++|+| =||=+++. .-||-.=||+-=|=.+|++.+
T Consensus 38 ~~i~~av~~A~~KG~k-esLvl~~d--------~AlVvsv~NrTVITAmd~~~~ 82 (96)
T TIGR02530 38 KKLLEAVEEAESKGVK-DSLILMND--------AALVVSLKNRTVITAMDKDEL 82 (96)
T ss_pred HHHHHHHHHHHhcCCC-ceEEEeCC--------EEEEEEcCCCeEEEEeCchhh
Confidence 4689999999999999 56655432 334444454555556666554
No 221
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.79 E-value=77 Score=32.39 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=42.1
Q ss_pred ccCceeccchhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCC
Q 011017 381 RYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGS 448 (495)
Q Consensus 381 r~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~ 448 (495)
||+|-=--|.-.+.=++++||||.-|.+.|++.|-|+ |+-.-|=+++| .-+-|-..|-
T Consensus 80 RfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA---------GYDVYYE~~d~-eT~~rFi~g~ 137 (287)
T COG3623 80 RFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA---------GYDVYYEEADE-ETRQRFIEGL 137 (287)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec---------cceeeeccCCH-HHHHHHHHHH
Confidence 5555333355566678999999999999999999775 66666666777 6666666663
No 222
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.69 E-value=65 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEec
Q 011017 396 NSLIEEAILEADAKGVKVISLG 417 (495)
Q Consensus 396 n~~ie~ai~~a~~~g~kv~sl~ 417 (495)
++.+++++.+|.++|+|++++-
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 5668888899999999999985
No 223
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=26.67 E-value=1.1e+02 Score=29.57 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=35.4
Q ss_pred cCCCCcceEEecC-----CchhhHhhhhcCCC-CCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 435 RQPNKLKIKVVDG-----SSLAAAVVVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 435 ~~p~~l~~~vv~g-----~~l~~a~v~~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
++| ++++.++.. ..++.+.+-+.+|. +..+|+++|.. .+-+++..+|-++|+.
T Consensus 177 ~~~-~~~~~~~~s~~~~~g~~~~~~l~~~~~~~~~~~vyvcGp~---~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 177 QHP-NLRLHLLYTREELDGRLSAAHLDAVVPDLADRQVYACGPP---GFLDAAEELLEAAGLA 235 (243)
T ss_pred hCC-CeEEEEEEcCCccCCCCCHHHHHHhccCcccCeEEEECCH---HHHHHHHHHHHHCCCc
Confidence 456 666654321 22444444444453 34599999998 7889999999999984
No 224
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=26.65 E-value=1.2e+02 Score=29.21 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=27.0
Q ss_pred HhhhhcCCC--CCceEEEeccCCchhHHHHHHHHHhhcCc
Q 011017 453 AVVVNSLPK--TTAHVLLRGTVTANKVANAVASSLCQMGI 490 (495)
Q Consensus 453 a~v~~~ip~--~~~~v~l~g~~~~~k~~~a~a~~lc~~~~ 490 (495)
+.+.+.++. ...+|+++|.. .+-+++...|-++|+
T Consensus 189 ~~l~~~l~~~~~~~~vyicGp~---~m~~~~~~~l~~~G~ 225 (236)
T cd06210 189 DALREDLASSDAKPDIYLCGPP---GMVDAAFAAAREAGV 225 (236)
T ss_pred HHHHHhhcccCCCcEEEEeCCH---HHHHHHHHHHHHcCC
Confidence 445555643 34689999997 788999999999997
No 225
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=26.63 E-value=1.1e+02 Score=34.06 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=31.6
Q ss_pred eEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHH--hhcCcEeee
Q 011017 442 IKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL--CQMGIKVSF 494 (495)
Q Consensus 442 ~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~l--c~~~~~v~~ 494 (495)
+-+|.|+. ..+.+.+ ++++-|.+||++ .+|++|+.+- .+++.||.+
T Consensus 209 ~~~v~g~~---~~~~~~l-~~v~~v~fTGS~---~~G~~v~~~aa~~~~~~~~~l 256 (521)
T PRK11903 209 LSVVCGSS---AGLLDHL-QPFDVVSFTGSA---ETAAVLRSHPAVVQRSVRVNV 256 (521)
T ss_pred eEEeeCCc---hHHHhcc-cCCCEEEEECCH---HHHHHHHhhhhhhccCceeEe
Confidence 55565533 1134444 578899999998 9999999853 367778764
No 226
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=26.41 E-value=1.5e+02 Score=27.44 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=30.8
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.|+-.-|+|..-|.+ .-+|+.+|..|-++|..|.+
T Consensus 23 ~~~~~gk~v~VvGrs--~~vG~pla~lL~~~gatV~~ 57 (140)
T cd05212 23 GVRLDGKKVLVVGRS--GIVGAPLQCLLQRDGATVYS 57 (140)
T ss_pred CCCCCCCEEEEECCC--chHHHHHHHHHHHCCCEEEE
Confidence 466677899999999 58999999999999999875
No 227
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.11 E-value=85 Score=32.84 Aligned_cols=43 Identities=21% Similarity=0.178 Sum_probs=35.0
Q ss_pred hhhHhhhh-----cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~-----~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+. .|+-.-|+|.+.|.. .=+|+.+|..|.++|..|.+
T Consensus 141 cTp~aii~lL~~~~i~l~Gk~V~vIG~s--~ivG~PmA~~L~~~gatVtv 188 (301)
T PRK14194 141 CTPSGCLRLLEDTCGDLTGKHAVVIGRS--NIVGKPMAALLLQAHCSVTV 188 (301)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCC--CccHHHHHHHHHHCCCEEEE
Confidence 46666654 346677899999997 47999999999999999976
No 228
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.01 E-value=1e+02 Score=34.08 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=29.3
Q ss_pred HhhhhcCCCC--CceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 453 AVVVNSLPKT--TAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 453 a~v~~~ip~~--~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..|.+..|+. .+=++|+|..+-+==|.++|.+|.++|++|.+
T Consensus 48 ~~i~~~~~~~~~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v 91 (462)
T PLN03049 48 SAIAEVYSPSEYRRVLALCGPGNNGGDGLVAARHLHHFGYKPSI 91 (462)
T ss_pred HHHHHhcccccCCEEEEEECCCCCHHHHHHHHHHHHHCCCceEE
Confidence 3455566653 34457787765455688999999999998865
No 229
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=25.93 E-value=1e+02 Score=33.30 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=19.2
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhc-CcEee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQM-GIKVS 493 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~ 493 (495)
+++-|.+||.+ ++|+.|+.+.+++ +.+|.
T Consensus 175 ~v~~v~ftGs~---~~g~~i~~~~a~~~~~~~~ 204 (431)
T cd07095 175 GIDGLLFTGSA---ATGLLLHRQFAGRPGKILA 204 (431)
T ss_pred CCCEEEEECcH---HHHHHHHHHhhccCCCcEE
Confidence 56677777776 6777777776654 35544
No 230
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=25.79 E-value=74 Score=33.08 Aligned_cols=61 Identities=26% Similarity=0.487 Sum_probs=36.0
Q ss_pred chhhhhhHHHHHHH-------------------HHHHH-hcCCeEEEecccccccc---cc--ccceeeeccCCCCcceE
Q 011017 389 PWRREAINSLIEEA-------------------ILEAD-AKGVKVISLGLLNQGEE---LN--RNGEIYLERQPNKLKIK 443 (495)
Q Consensus 389 ~~~~~~in~~ie~a-------------------i~~a~-~~g~kv~sl~~ln~~~~---ln--~~g~~~~~~~p~~l~~~ 443 (495)
|.-||-|-++|.+| ++||- |+||-|-=| |++..- |+ ..-.+=....+ |+|||
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiL--LD~~~~~~Fl~Mc~~~~v~~~~~~-nmrVR 209 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYIL--LDEQNLPHFLEMCEKLGVNLQHLK-NMRVR 209 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEE--echhcChHHHHHHHHCCCChhhcC-CeEEE
Confidence 34467777777776 45666 999988543 333211 00 00011112346 99999
Q ss_pred EecCCchhh
Q 011017 444 VVDGSSLAA 452 (495)
Q Consensus 444 vv~g~~l~~ 452 (495)
.|.|.|.-+
T Consensus 210 sv~G~~y~~ 218 (284)
T PF07894_consen 210 SVTGCTYYS 218 (284)
T ss_pred EecCCeeec
Confidence 999998754
No 231
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=25.71 E-value=1.6e+02 Score=30.57 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCCcceEEecCCch--hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSL--AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l--~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +--+.+|.|+.- +.+.+.+ ++++-|.+||.. +.|++|+.++.+++.++++
T Consensus 148 p-~~~v~~~~~~~~~~~~~l~~~---~~vd~v~~tGs~---~~~~~v~~~~~~~~~~~~~ 200 (367)
T cd06534 148 P-PGVVNVVPGGGDEVGAALLSH---PRVDKISFTGST---AVGKAIMKAAAENLKPVTL 200 (367)
T ss_pred C-cCeEEEEEcCchhHHHHHhcC---CCcCEEEEECCH---HHHHHHHHHHhcCCCeEEE
Confidence 5 445667777652 3332222 257788888876 7888888888877777654
No 232
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=25.68 E-value=74 Score=33.47 Aligned_cols=31 Identities=29% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHh--hcCcEee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLC--QMGIKVS 493 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc--~~~~~v~ 493 (495)
-+.++|++++|. ||=|++.|..|. +.+++|+
T Consensus 134 ~ga~~vvl~SAS--SKTA~glA~~L~~~~~~~~~v 166 (314)
T PF11017_consen 134 FGAAQVVLSSAS--SKTAIGLAYCLKKQRGPPKVV 166 (314)
T ss_pred CCccEEEEeccc--hHHHHHHHHHhhccCCCceEE
Confidence 366899999999 799999999998 5556654
No 233
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.49 E-value=56 Score=28.24 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.1
Q ss_pred chhhhhhHHHHHHHHHHHHhcCCeE
Q 011017 389 PWRREAINSLIEEAILEADAKGVKV 413 (495)
Q Consensus 389 ~~~~~~in~~ie~ai~~a~~~g~kv 413 (495)
|.+.+.+-++|+||=.|=.++|+||
T Consensus 67 peA~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6788889999999999999999986
No 234
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.40 E-value=70 Score=36.43 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=29.5
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++..++|.+.|.. ++|+.+|..|.++|++|++
T Consensus 395 ~~~~~~~~vII~G~G---r~G~~va~~L~~~g~~vvv 428 (621)
T PRK03562 395 EIDEQQPRVIIAGFG---RFGQIVGRLLLSSGVKMTV 428 (621)
T ss_pred ccccccCcEEEEecC---hHHHHHHHHHHhCCCCEEE
Confidence 455556899999997 9999999999999998875
No 235
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=25.39 E-value=80 Score=28.97 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCe--EEEecccccc-cc----ccccc--eeeeccCCCCcceEEecCCchhhHhhhhcC-CCCCceE
Q 011017 397 SLIEEAILEADAKGVK--VISLGLLNQG-EE----LNRNG--EIYLERQPNKLKIKVVDGSSLAAAVVVNSL-PKTTAHV 466 (495)
Q Consensus 397 ~~ie~ai~~a~~~g~k--v~sl~~ln~~-~~----ln~~g--~~~~~~~p~~l~~~vv~g~~l~~a~v~~~i-p~~~~~v 466 (495)
.+++.|-.-|++.|.+ ++++|-..+. ++ |-+.| ++|.-.+| .+. +-+.-+.|-++.++ -+.--++
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~-~~~----~~~~~~~a~~l~~~~~~~~~~l 93 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDP-ALA----EYDPEAYADALAELIKEEGPDL 93 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-G-GGT----TC-HHHHHHHHHHHHHHHT-SE
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCc-ccc----ccCHHHHHHHHHHHHHhcCCCE
Confidence 4566666677777666 5666621122 22 44233 67777787 332 22333222233322 2223357
Q ss_pred EEeccCCchhHHHHHHHHHhhc
Q 011017 467 LLRGTVTANKVANAVASSLCQM 488 (495)
Q Consensus 467 ~l~g~~~~~k~~~a~a~~lc~~ 488 (495)
+|.|++ ..|+.++-.|+.|
T Consensus 94 Vl~~~t---~~g~~la~~lA~~ 112 (164)
T PF01012_consen 94 VLFGST---SFGRDLAPRLAAR 112 (164)
T ss_dssp EEEESS---HHHHHHHHHHHHH
T ss_pred EEEcCc---CCCCcHHHHHHHH
Confidence 899988 6788888777654
No 236
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=25.14 E-value=61 Score=30.67 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHhcCCeEE-Eec
Q 011017 393 EAINSLIEEAILEADAKGVKVI-SLG 417 (495)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~-sl~ 417 (495)
..-+..+|....+||+.|.||. +|+
T Consensus 61 ~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 61 MPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred CCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3456789999999999999985 443
No 237
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=25.03 E-value=2.1e+02 Score=29.78 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=52.6
Q ss_pred HhcCCeEEEeccccccccccc-cceeeeccCC-CCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchh
Q 011017 407 DAKGVKVISLGLLNQGEELNR-NGEIYLERQP-NKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANK 476 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~-~g~~~~~~~p-~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k 476 (495)
+..|+|+++.--=|..+.|.. .|.+.+. .| +..-+=++||+.||+ |+-.+-+ +++.+.|-+.|+. .
T Consensus 63 ~~~g~K~v~~~p~N~~~glp~~~g~i~L~-d~~tG~p~ai~d~~~lT~~RTaA~salaa~~La~~~~~~lgiiG~G---~ 138 (325)
T TIGR02371 63 EMAGVKCVNVHPGNPDRHLPTVMALIILV-SPETGFPIALMDGTYITDMRTGAAGGVAAKYLARKDSSVLGIIGAG---R 138 (325)
T ss_pred CeEEEEEEeecCCchhcCCCcceEEEEEe-eCCCCCeEEEEeCcchhhHHHHHHHHHHHHHhCCCCCCEEEEECCC---H
Confidence 457999999765555444432 3444443 33 366678899999974 2333445 7899999999997 8
Q ss_pred HHHHHHHHHhh
Q 011017 477 VANAVASSLCQ 487 (495)
Q Consensus 477 ~~~a~a~~lc~ 487 (495)
.|++-+.+|++
T Consensus 139 qA~~~l~al~~ 149 (325)
T TIGR02371 139 QAWTQLEALSR 149 (325)
T ss_pred HHHHHHHHHHh
Confidence 99997777665
No 238
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=24.91 E-value=1.5e+02 Score=32.57 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=30.0
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHh-hcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLC-QMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc-~~~~~v~~ 494 (495)
-+.+|+|+.-.+...|-+ .++++-|.+||.+ ++|+.|+.... ++..+|.+
T Consensus 216 ~v~~v~g~~~~~~~~L~~-~~~vd~v~fTGs~---~~g~~v~~~aa~~~~~~~~l 266 (494)
T PRK09847 216 VLNVVTGFGHEAGQALSR-HNDIDAIAFTGST---RTGKQLLKDAGDSNMKRVWL 266 (494)
T ss_pred cEEEEeCCChhHHHHHhc-CCCCCEEEEECCH---HHHHHHHHHhhhhCCCeEEE
Confidence 366666643222222222 3477788889887 78888888765 34556543
No 239
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.87 E-value=96 Score=28.79 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=50.5
Q ss_pred hhhhhHHHHHHHHHHHHhcCCe--EEEecccccc---cccc--ccceeeeccCCCCcceEEecCCchhhHhhhhcCCCCC
Q 011017 391 RREAINSLIEEAILEADAKGVK--VISLGLLNQG---EELN--RNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTT 463 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~k--v~sl~~ln~~---~~ln--~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~~~ 463 (495)
+.+.+++.-.|++-.|++.|.+ |+.+|- |.. +++- |-.+.|+-.+| .+.-. | ..-.+.++..-|-+.-
T Consensus 9 ~~g~l~~~s~el~~~A~~l~~~v~~v~~G~-~~~~~~~~~~~~Gad~v~~~~~~-~~~~~--~-~~~~a~al~~~i~~~~ 83 (168)
T cd01715 9 RNGELRELTLEAVTAARKLGGEVTALVIGS-GAEAVAAALKAYGADKVLVAEDP-ALAHY--L-AEPYAPALVALAKKEK 83 (168)
T ss_pred cCCChHHHHHHHHHHHHHhCCCEEEEEECC-ChHHHHHHHHhcCCCEEEEecCh-hhccc--C-hHHHHHHHHHHHHhcC
Confidence 4456888888888889998744 444442 211 2232 23355665665 43321 1 1223333444444433
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhc
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQM 488 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~ 488 (495)
-+++|.|++ ..||.+|-.|+.|
T Consensus 84 p~~Vl~~~t---~~g~~la~rlAa~ 105 (168)
T cd01715 84 PSHILAGAT---SFGKDLAPRVAAK 105 (168)
T ss_pred CCEEEECCC---ccccchHHHHHHH
Confidence 588999998 4577887777654
No 240
>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family. The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer
Probab=24.80 E-value=1.4e+02 Score=31.64 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=30.7
Q ss_pred ceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.++.|+.- +...++. - ++++-|.+||.. +.|+.|+.++.+++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~~l~~-~-~~i~~v~ftGs~---~~~~~v~~~a~~~~~~~~~ 204 (432)
T cd07078 155 VLNVVTGDGDEVGAALAS-H-PRVDKISFTGST---AVGKAIMRAAAENLKRVTL 204 (432)
T ss_pred cEEEEecCchHHHHHHhc-C-CCCCEEEEECcH---HHHHHHHHHHhhccCcEEE
Confidence 3556666542 2222222 1 357778888876 7888888888877777654
No 241
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=24.80 E-value=1.5e+02 Score=32.52 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 436 QPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 436 ~p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
-| .=-+.+|.|+.-.+.-.|-+ -++++-|.+||++ ++|+.|+.+..+ +..+|.+
T Consensus 199 lP-~g~v~~v~g~~~~~~~~L~~-~~~vd~V~fTGs~---~~G~~i~~~aa~~~~~~~~l 253 (481)
T cd07143 199 FP-PGVINVVSGYGRTCGNAISS-HMDIDKVAFTGST---LVGRKVMEAAAKSNLKKVTL 253 (481)
T ss_pred cC-cccEEEEeCCchhHHHHHhc-CCCCCEEEEECch---HHHHHHHHHHHHhcCCEEEe
Confidence 35 33477787754332222222 2467889999988 889999887664 4455543
No 242
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=24.75 E-value=1.5e+02 Score=32.13 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=34.1
Q ss_pred CcceEEecCCc-hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSS-LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~-l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|.|+. -+.+ ++.. | ++.|.+||++ .+|+.|+....+++.+|++
T Consensus 164 ~g~v~vv~g~~~~~~~-l~~~-~--vd~v~ftGs~---~~g~~i~~~aa~~~~~~~l 213 (436)
T cd07135 164 PDAFQVVQGGVPETTA-LLEQ-K--FDKIFYTGSG---RVGRIIAEAAAKHLTPVTL 213 (436)
T ss_pred cCEEEEEcCCchhHHH-HHhC-C--CCEEEEECCc---HHHHHHHHHHHhcCCCeEE
Confidence 33466777643 2333 3332 4 8999999998 8999999887777777754
No 243
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=24.60 E-value=55 Score=33.62 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=22.3
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+..+++..+ +--|+|+|.+-.++|+++.+
T Consensus 71 ~~~vv~aSs--GN~g~a~A~~a~~~g~~~~v 99 (328)
T TIGR00260 71 NDTVLCAST--GNTGAAAAAYAGKAGVKVVI 99 (328)
T ss_pred CCEEEEeCC--cHHHHHHHHHhccCCCcEEE
Confidence 345666444 68899999888889999876
No 244
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=24.48 E-value=1.1e+02 Score=31.75 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=33.6
Q ss_pred cCCchhhHhhhhcCCCCC--ceEEEeccCCchhHHHHHHHHHhhcCc-Eeee
Q 011017 446 DGSSLAAAVVVNSLPKTT--AHVLLRGTVTANKVANAVASSLCQMGI-KVSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~ip~~~--~~v~l~g~~~~~k~~~a~a~~lc~~~~-~v~~ 494 (495)
||..+..+..=+.+|.++ ++|++.|+.. -+|||+.+|.+.|+ ++.+
T Consensus 107 D~~G~~~~L~~~~~~~~~~~~~vlilGAGG---AarAv~~aL~~~g~~~i~V 155 (283)
T COG0169 107 DGIGFLRALKEFGLPVDVTGKRVLILGAGG---AARAVAFALAEAGAKRITV 155 (283)
T ss_pred CHHHHHHHHHhcCCCcccCCCEEEEECCcH---HHHHHHHHHHHcCCCEEEE
Confidence 555565555554555665 7899999984 58999999999996 4543
No 245
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=24.40 E-value=1.5e+02 Score=32.30 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=32.6
Q ss_pred ceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|+.=++..++ +-| +++.|.+||++ .+|+.|+....+...||++
T Consensus 195 ~~~~v~g~~~~~~~L~-~~~-~v~~V~ftGS~---~~g~~v~~~a~~~~~~v~l 243 (477)
T TIGR01722 195 VLNVVHGDKEAVDRLL-EHP-DVKAVSFVGST---PIGRYIHTTGSAHGKRVQA 243 (477)
T ss_pred eEEEEeCCHHHHHHHH-cCC-CcCEEEEECCH---HHHHHHHHHHHhcCCeEEE
Confidence 3677777543333333 334 48889999997 7899888775566667754
No 246
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.35 E-value=78 Score=34.58 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..+.|++.|+. ++|.-+|.+|+++|++.+.
T Consensus 177 ~~~~vlvIGAG---em~~lva~~L~~~g~~~i~ 206 (414)
T COG0373 177 KDKKVLVIGAG---EMGELVAKHLAEKGVKKIT 206 (414)
T ss_pred ccCeEEEEccc---HHHHHHHHHHHhCCCCEEE
Confidence 66799999997 9999999999999987653
No 247
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.30 E-value=92 Score=29.50 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=30.9
Q ss_pred hhHhhhh---c--CCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 451 AAAVVVN---S--LPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 451 ~~a~v~~---~--ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
||.+|+. . ++-.-|.|.+.|.. .-||+-+|..|-++|..|.+
T Consensus 19 Tp~aii~lL~~~~~~l~Gk~v~VvGrs--~~VG~Pla~lL~~~~atVt~ 65 (160)
T PF02882_consen 19 TPLAIIELLEYYGIDLEGKKVVVVGRS--NIVGKPLAMLLLNKGATVTI 65 (160)
T ss_dssp HHHHHHHHHHHTT-STTT-EEEEE-TT--TTTHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEECCc--CCCChHHHHHHHhCCCeEEe
Confidence 5555543 3 46677899999998 57999999999999999976
No 248
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=1.3e+02 Score=32.13 Aligned_cols=91 Identities=26% Similarity=0.380 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEE-----ecccccc----------ccccccceeeec-cCCCCcceEEecCCchhhHhhh
Q 011017 393 EAINSLIEEAILEADAKGVKVIS-----LGLLNQG----------EELNRNGEIYLE-RQPNKLKIKVVDGSSLAAAVVV 456 (495)
Q Consensus 393 ~~in~~ie~ai~~a~~~g~kv~s-----l~~ln~~----------~~ln~~g~~~~~-~~p~~l~~~vv~g~~l~~a~v~ 456 (495)
-++|.-|.-.+..|-+.|.+|+. +|++|-. .-+|.||+..-. |.| +. |-.++-. .|+-.|
T Consensus 15 PGmNa~Iravvr~a~~~g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~-~~--~~~e~~~-~~~~~l 90 (347)
T COG0205 15 PGMNAVIRAVVRTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFP-EF--KTEEGRK-VAAENL 90 (347)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCC-Cc--ccHHHHH-HHHHHH
Confidence 47899999999999999999998 5888863 346888887765 555 22 2222222 222233
Q ss_pred hcCCCCCceEEEeccCCchhHHHHHHHHHhhcC-cEee
Q 011017 457 NSLPKTTAHVLLRGTVTANKVANAVASSLCQMG-IKVS 493 (495)
Q Consensus 457 ~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~-~~v~ 493 (495)
++ .+.+-.+..|--. ....|.-|++.+ +.|+
T Consensus 91 ~~--~gId~LvvIGGDg----S~~gA~~Lae~~~i~vV 122 (347)
T COG0205 91 KK--LGIDALVVIGGDG----SYTGAALLAEEGGIPVV 122 (347)
T ss_pred HH--cCCCEEEEECCCC----hHHHHHHHHHhcCCcEE
Confidence 32 3666666665553 366677788777 6654
No 249
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=24.05 E-value=1.6e+02 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 459 LPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 459 ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.-.-+.|.+.|.. ++|+.+|..|-..|.+|++
T Consensus 208 ~~l~Gk~VlViG~G---~IG~~vA~~lr~~Ga~ViV 240 (425)
T PRK05476 208 VLIAGKVVVVAGYG---DVGKGCAQRLRGLGARVIV 240 (425)
T ss_pred CCCCCCEEEEECCC---HHHHHHHHHHHhCCCEEEE
Confidence 33345689999986 9999999999999999986
No 250
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.04 E-value=2.5e+02 Score=29.18 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=60.8
Q ss_pred HHhcCCeEEEec----cccccccc-------cccceeeeccCCC---------CcceEEecCCc--------hh-hHhhh
Q 011017 406 ADAKGVKVISLG----LLNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDGSS--------LA-AAVVV 456 (495)
Q Consensus 406 a~~~g~kv~sl~----~ln~~~~l-------n~~g~~~~~~~p~---------~l~~~vv~g~~--------l~-~a~v~ 456 (495)
|.+.|.+|+.+. -++|+|++ ++++-+.|-|||. ..+|=|+++.+ |+ ...+.
T Consensus 61 ~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~ 140 (304)
T TIGR00658 61 AYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTII 140 (304)
T ss_pred HHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHH
Confidence 456999999885 35677764 6677788889983 35666787643 11 12244
Q ss_pred hcCCC-CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 457 NSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 457 ~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+..+. +-..|-..|.. +.+++..+..|.+-|++|.+
T Consensus 141 e~~g~l~g~~v~~vGd~--~~v~~Sl~~~l~~~g~~v~~ 177 (304)
T TIGR00658 141 EHFGKLKGVKVVYVGDG--NNVCNSLMLAGAKLGMDVVV 177 (304)
T ss_pred HHhCCCCCcEEEEEeCC--CchHHHHHHHHHHcCCEEEE
Confidence 44442 22367788998 58999999999999999876
No 251
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=24.01 E-value=1.1e+02 Score=31.50 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=47.0
Q ss_pred CceeccchhhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcCCCC
Q 011017 383 IVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSLPKT 462 (495)
Q Consensus 383 ~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~~ 462 (495)
|+-=.+|. |+.|-+++.+.=.+|++.|+ .|-- .+.+|.++ =-=-||.-...+.--..++..
T Consensus 63 G~nVTiP~-K~~~~~~~D~l~~~A~~iGA-------VNTv--~~~~g~l~---------G~NTD~~Gf~~~l~~~~~~~~ 123 (288)
T PRK12749 63 GTGVSMPN-KQLACEYVDELTPAAKLVGA-------INTI--VNDDGYLR---------GYNTDGTGHIRAIKESGFDIK 123 (288)
T ss_pred EEEECcCC-HHHHHHHhccCCHHHHHhCc-------eeEE--EccCCEEE---------EEecCHHHHHHHHHhcCCCcC
Confidence 44445554 45555566665556666664 3321 11222211 111234444444332233333
Q ss_pred CceEEEeccCCchhHHHHHHHHHhhcCc-Eee
Q 011017 463 TAHVLLRGTVTANKVANAVASSLCQMGI-KVS 493 (495)
Q Consensus 463 ~~~v~l~g~~~~~k~~~a~a~~lc~~~~-~v~ 493 (495)
-|.|++.|+.. .|||||.+|+++|+ +|.
T Consensus 124 ~k~vlvlGaGG---aarAi~~~l~~~g~~~i~ 152 (288)
T PRK12749 124 GKTMVLLGAGG---ASTAIGAQGAIEGLKEIK 152 (288)
T ss_pred CCEEEEECCcH---HHHHHHHHHHHCCCCEEE
Confidence 36889999873 38999999999887 443
No 252
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=23.95 E-value=1.3e+02 Score=33.25 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=32.5
Q ss_pred CcceEEecCCch-hhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhc---CcEeee
Q 011017 439 KLKIKVVDGSSL-AAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM---GIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l-~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~---~~~v~~ 494 (495)
+=-+.+|+|+.- ++..++. .++++.|++||.+ ++|++|+....++ -++|++
T Consensus 224 ~gvv~vv~g~~~~~~~~L~~--~~~vd~V~ftGs~---~~g~~i~~~aa~~~~~~~~v~l 278 (518)
T cd07125 224 RDVLQLVPGDGEEIGEALVA--HPRIDGVIFTGST---ETAKLINRALAERDGPILPLIA 278 (518)
T ss_pred CCcEEEEecCchhhHHHHhc--CCCcCEEEEECCH---HHHHHHHHHhhhccCCCceEEE
Confidence 334777777654 2222221 2478889999987 8899998886655 345543
No 253
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=23.83 E-value=95 Score=24.27 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=10.4
Q ss_pred HHHHHH-HHHhcCCeEE
Q 011017 399 IEEAIL-EADAKGVKVI 414 (495)
Q Consensus 399 ie~ai~-~a~~~g~kv~ 414 (495)
+|++|. .||++|++-.
T Consensus 20 ~~~~la~kAd~~GA~~y 36 (56)
T PF07338_consen 20 AEEALAKKADEKGAKYY 36 (56)
T ss_dssp HHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 455555 8999998743
No 254
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.68 E-value=79 Score=29.76 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=38.6
Q ss_pred EEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhc--CcEee
Q 011017 443 KVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQM--GIKVS 493 (495)
Q Consensus 443 ~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~--~~~v~ 493 (495)
.-|+|+.|+-++.= ...+.-+.|||.|++ ..+....+..|.++ |+++.
T Consensus 29 ~rv~g~dl~~~l~~-~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 29 ERVTGSDLFPDLLR-RAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred cccCHHHHHHHHHH-HHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEE
Confidence 66899999877654 555555699999999 69999999999998 77765
No 255
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=23.57 E-value=1.5e+02 Score=32.16 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 437 PNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 437 p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
| +=-+.+|+|+.-.+.--+-+ -++++-|.+||.+ ++|++|+....+++.+|.+
T Consensus 182 P-~gvv~vv~g~~~~~~~~l~~-~~~v~~v~ftGs~---~~g~~i~~~a~~~~~~v~l 234 (462)
T PF00171_consen 182 P-PGVVNVVPGDGSEVGEALVS-HPDVDLVSFTGST---ATGRAIAKAAAKNLKPVVL 234 (462)
T ss_dssp T-TTSEEEECSSTHHHHHHHHH-TTTEEEEEEESEH---HHHHHHHHHHHTTTSEEEE
T ss_pred c-cccccccccccccccceeee-ccccceeeecchh---hhhhhhhhhcccccccccc
Confidence 5 44567778854322222212 2378889999997 8999999998888888875
No 256
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=23.46 E-value=84 Score=32.91 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=25.3
Q ss_pred CCeEEEecc----ccccccc-cccceeeeccCCCCcceEEec-CCch
Q 011017 410 GVKVISLGL----LNQGEEL-NRNGEIYLERQPNKLKIKVVD-GSSL 450 (495)
Q Consensus 410 g~kv~sl~~----ln~~~~l-n~~g~~~~~~~p~~l~~~vv~-g~~l 450 (495)
|+|+|+|+. +.+.+++ .+.|-.-|+-+. .+||.|+. ||.+
T Consensus 126 ~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r-~~rv~II~TG~Ev 171 (312)
T cd03522 126 TVKIIPLAVPEALVERAEALARDGPLLRVAPFR-PLRVGLIVTGSEV 171 (312)
T ss_pred EEEEeeeecCHHHHHHHHHHHHhCCCcEEEecC-CCEEEEEEcCCcC
Confidence 677777764 5555544 345666777666 67888774 6643
No 257
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=23.31 E-value=2.1e+02 Score=29.54 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=49.8
Q ss_pred HhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhh-------HhhhhcCCCCCceEEEeccCCchhHHH
Q 011017 407 DAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSLPKTTAHVLLRGTVTANKVAN 479 (495)
Q Consensus 407 ~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~ip~~~~~v~l~g~~~~~k~~~ 479 (495)
+..|+|+++.. .+ +-.|.+.+.--.+..-.=+.||+.||+ |+-.+-+.++.+.+-+.|+. .-|+
T Consensus 60 ~~~g~K~~~~~---~~---~~~g~v~L~d~~TG~p~Almd~~~lT~~RTaA~salaa~~l~~da~~l~iiGaG---~QA~ 130 (301)
T PRK06407 60 HIAGLKTYIAG---RN---GARFVVLLFDVNNPELVAIFEANRLGQIRTGAVTAYATSILHKNVENFTIIGSG---FQAE 130 (301)
T ss_pred CeeEEEEEecC---CC---CccEEEEEEECCCCCEEEEEccchHHHHHHHHHHHHHHHHhhcCCcEEEEECCc---HHHH
Confidence 34689988752 11 233454444333456677899999985 34445556799999999997 8899
Q ss_pred HHHHHHhh
Q 011017 480 AVASSLCQ 487 (495)
Q Consensus 480 a~a~~lc~ 487 (495)
.-+.++|+
T Consensus 131 ~~~~a~~~ 138 (301)
T PRK06407 131 TQLEGMAS 138 (301)
T ss_pred HHHHHHHh
Confidence 99988886
No 258
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.22 E-value=38 Score=23.64 Aligned_cols=11 Identities=55% Similarity=0.894 Sum_probs=9.3
Q ss_pred HhcCCeEEEec
Q 011017 407 DAKGVKVISLG 417 (495)
Q Consensus 407 ~~~g~kv~sl~ 417 (495)
+..|-||+|||
T Consensus 19 eD~GPKv~~lg 29 (30)
T PF07492_consen 19 EDTGPKVLSLG 29 (30)
T ss_pred ecCCCeEEecc
Confidence 56899999998
No 259
>PF01867 Cas_Cas1: CRISPR associated protein Cas1; InterPro: IPR002729 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents Cas1, which is a metal-dependent DNA-specific endonuclease []. Cas1 may play a role in the recognition, cleavage, and/or integration of foreign nucleic acids into CRISPRs.; PDB: 2YZS_A 3LFX_D 3PV9_E 3NKE_C 3NKD_A 3GOD_D.
Probab=23.11 E-value=55 Score=33.12 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=29.1
Q ss_pred hhhcCCC-CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 455 VVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 455 v~~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+..+||- ++++|++.|.. -+..+.-..|.++||.|++
T Consensus 26 ~~~~iP~~~I~~Ivi~g~~---~iSt~ai~~l~~~gI~v~~ 63 (282)
T PF01867_consen 26 IKKSIPLSDIDSIVIFGGV---SISTAAIRLLSKNGIPVVF 63 (282)
T ss_dssp EEEEEEGCCECEEEE-STE---EEEHHHHHHHHHTT-EEEE
T ss_pred EEEEEchHhccEEEEcCCC---CCCHHHHHHHHHCCCcEEE
Confidence 5667875 88999999997 5778888899999999975
No 260
>PRK09850 pseudouridine kinase; Provisional
Probab=22.76 E-value=1.3e+02 Score=30.41 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=0.0
Q ss_pred eeccchhhhhh---------HHHHHHHHHHHHhcCCe--EEEeccccccccccccceeeeccCCCCcceEEec----CCc
Q 011017 385 QYNLPWRREAI---------NSLIEEAILEADAKGVK--VISLGLLNQGEELNRNGEIYLERQPNKLKIKVVD----GSS 449 (495)
Q Consensus 385 ~y~~~~~~~~i---------n~~ie~ai~~a~~~g~k--v~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~----g~~ 449 (495)
+++.|.+.|.- ...+|++...-.+.|+| |+++|. +-.--.+++|+... .| -.++++|| |++
T Consensus 182 dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~~~~~~~~~~--~~-~~~~~vvDttGAGDa 257 (313)
T PRK09850 182 HTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMGG-DGVYYSDISGESGW--SA-PIKTNVINVTGAGDA 257 (313)
T ss_pred eEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-ceEEEEcCCCCeEe--cC-CCCcccccCCCcHHH
Q ss_pred hhhHhhh
Q 011017 450 LAAAVVV 456 (495)
Q Consensus 450 l~~a~v~ 456 (495)
..|+.+.
T Consensus 258 F~agfi~ 264 (313)
T PRK09850 258 MMAGLAS 264 (313)
T ss_pred HHHHHHH
No 261
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=22.73 E-value=1.1e+02 Score=31.23 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=29.4
Q ss_pred cCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcE-eee
Q 011017 446 DGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIK-VSF 494 (495)
Q Consensus 446 ~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~-v~~ 494 (495)
||.....+.--+.++. -+.|++.|+. =.||||+.+|.+.|++ |.+
T Consensus 106 D~~Gf~~~L~~~~~~~-~~~vlilGaG---GaarAi~~aL~~~g~~~i~i 151 (272)
T PRK12550 106 DYIAIAKLLASYQVPP-DLVVALRGSG---GMAKAVAAALRDAGFTDGTI 151 (272)
T ss_pred CHHHHHHHHHhcCCCC-CCeEEEECCc---HHHHHHHHHHHHCCCCEEEE
Confidence 4544444432223332 2578999987 4689999999999985 544
No 262
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=22.66 E-value=1.2e+02 Score=30.29 Aligned_cols=99 Identities=22% Similarity=0.281 Sum_probs=59.4
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEec-----------cccccccccccceeeeccCCCCcceEEecCCchhhHhhhhcC
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLG-----------LLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVVVNSL 459 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~-----------~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v~~~i 459 (495)
..+.+.+.|++++.++-+.|.+.+.|| ++.+.. =.+=|-+.++.|+ |++.....|+....+..+..+
T Consensus 61 ~~~~~~~~l~~~v~~~~~~g~~pi~lGGdhsis~~~~~~l~~~~-~~~i~vI~~DAH~-D~~~~~~~~~~~~~g~~~~~~ 138 (277)
T PF00491_consen 61 DNEQVFERLAEAVAEVLEAGAFPIVLGGDHSISYGTIAALARAY-GGPIGVIWFDAHP-DLRTPETSGSGNSHGMPLRRA 138 (277)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEEEEESSGGGHHHHHHHHHHHH-TTTEEEEEESSS-----STTTTTSSSGTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCEEEecCCCchhHHHhHHHHHhhc-CCCeeEEEecCcc-CCCcccccCCCCCCCChhhhh
Confidence 444489999999999999999999887 233322 0134889999999 888766455555555555444
Q ss_pred ---CC-CCceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 460 ---PK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 460 ---p~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
|. +.++|+..|..+. ... .=-.++-+.|+++.
T Consensus 139 ~~~~~~~~~~~v~iG~r~~-~~~-~e~~~~~~~~i~~~ 174 (277)
T PF00491_consen 139 LEEPLLDPENVVQIGIRSF-DNE-SEYEYLKELGIKIF 174 (277)
T ss_dssp HHTTSSEGGGEEEEEE-ST-THH-HHHHHHHHTTSEEE
T ss_pred cccCCcCcCcEEEEecccc-cch-HHHHHHHHcCCEEE
Confidence 22 3478888887752 222 12234455777764
No 263
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=22.65 E-value=1.2e+02 Score=32.47 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=30.7
Q ss_pred CcceEEecCCc--hhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 439 KLKIKVVDGSS--LAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~--l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=-+.+|+|.. .+.+.+. + +++++-|++||++ .+|+.|+... +.+|++
T Consensus 168 ~gvv~~v~g~~~~~~~~~l~-~-~~~v~~i~fTGS~---~~G~~i~~~a---~~pv~l 217 (406)
T cd07079 168 EDAVQLIPDTDREAVQELLK-L-DDYIDLIIPRGGA---GLIRFVVENA---TIPVIK 217 (406)
T ss_pred cccEEEecCCChHHHHHHHc-C-CCCccEEEeCCCH---HHHHHHHHhc---CCCEEe
Confidence 44567777742 2222222 2 4578899999998 8999998643 455543
No 264
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=22.65 E-value=93 Score=35.39 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.6
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.+|...|+. =+|.++|.+|.++|.+|++
T Consensus 261 ~dVvIIGaG---IaG~s~A~~La~~G~~V~V 288 (662)
T PRK01747 261 RDAAIIGGG---IAGAALALALARRGWQVTL 288 (662)
T ss_pred CCEEEECcc---HHHHHHHHHHHHCCCeEEE
Confidence 579999997 6899999999999999986
No 265
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=22.55 E-value=1e+02 Score=32.39 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCeE--EEeccccccccccccce--eeeccCCCCcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchh
Q 011017 401 EAILEADAKGVKV--ISLGLLNQGEELNRNGE--IYLERQPNKLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANK 476 (495)
Q Consensus 401 ~ai~~a~~~g~kv--~sl~~ln~~~~ln~~g~--~~~~~~p~~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k 476 (495)
|++-.|++.|.+| +.+|. +..++|-..|. +|+-.+| . + .-+... -+.++..-+-+.--+++|.|+| .
T Consensus 19 Ell~~A~~l~~~v~~vv~g~-~~~~~l~~~Gad~V~~~~~~-~-~--~~~~e~-~~~al~~~i~~~~P~~vL~~~T---~ 89 (312)
T PRK11916 19 ELFGGAQQWGQQVYAIVQNT-DQAQAVMPYGPKCIYVLEQN-D-A--LQRTEN-YAESIAALLKDKHPAMLLLAAT---K 89 (312)
T ss_pred HHHHHHHHcCCcEEEEEECh-hHHHHHHhcCCCEEEEeCCc-c-c--ccChHH-HHHHHHHHHHhcCCCEEEECCC---c
Confidence 6666788887544 44552 34566655554 7777777 3 1 112222 2233333333333578999998 7
Q ss_pred HHHHHHHHHhhc
Q 011017 477 VANAVASSLCQM 488 (495)
Q Consensus 477 ~~~a~a~~lc~~ 488 (495)
.||.+|-.|+.|
T Consensus 90 ~Grdla~rlAar 101 (312)
T PRK11916 90 RGKALAARLSVQ 101 (312)
T ss_pred chHHHHHHHHHH
Confidence 899999988865
No 266
>PLN02477 glutamate dehydrogenase
Probab=22.49 E-value=95 Score=33.81 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=24.4
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
+.|.+.|-. +||+.+|..|+++|.||+
T Consensus 207 ~~VaIqGfG---nVG~~~A~~L~e~GakVV 233 (410)
T PLN02477 207 QTFVIQGFG---NVGSWAAQLIHEKGGKIV 233 (410)
T ss_pred CEEEEECCC---HHHHHHHHHHHHcCCEEE
Confidence 568999965 999999999999999998
No 267
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=22.43 E-value=69 Score=29.22 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEec----cccccccccc--------cceeeeccCCCCcceE-----EecCCchhhH
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLG----LLNQGEELNR--------NGEIYLERQPNKLKIK-----VVDGSSLAAA 453 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~----~ln~~~~ln~--------~g~~~~~~~p~~l~~~-----vv~g~~l~~a 453 (495)
+...-+..+.+.+.++.+.|..|.+.+ +|-+.--||| .-+.+-+++| +.+++ |.||+-+||+
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p-~~~~~~~~~~v~dg~i~Ta~ 152 (166)
T PF13278_consen 74 DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFP-NVNVVSDQLFVDDGNIITAG 152 (166)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTT-CEEE-TSSSEEEETTEEEES
T ss_pred hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCC-CccccCCCEEEECCCeEEec
Confidence 455677888899999999999999874 2333333332 3355566778 65544 6788777765
Q ss_pred h
Q 011017 454 V 454 (495)
Q Consensus 454 ~ 454 (495)
.
T Consensus 153 g 153 (166)
T PF13278_consen 153 G 153 (166)
T ss_dssp S
T ss_pred H
Confidence 4
No 268
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.25 E-value=1.8e+02 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEeccccccc----cccccc
Q 011017 394 AINSLIEEAILEADAKGVKVISLGLLNQGE----ELNRNG 429 (495)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~ln~~~----~ln~~g 429 (495)
|+.|-||.|-..+++.|-+|.+||-|=-|+ +|..-|
T Consensus 13 GV~rAi~~a~~~~~~~~~~iy~lG~iIHN~~Vv~~L~~~G 52 (280)
T TIGR00216 13 GVKRAIQMAEEALKESGKPVYTLGPIVHNPQVVERLRERG 52 (280)
T ss_pred cHHHHHHHHHHHHhhcCCCeEEecCCccCHHHHHHHHHCC
Confidence 466666666555566688999999875544 444555
No 269
>PLN02527 aspartate carbamoyltransferase
Probab=22.25 E-value=3e+02 Score=28.68 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=62.4
Q ss_pred HHhcCCeEEEecc------ccccccc-------cccceeeeccCCC---------CcceEEecC-Cc--------hh-hH
Q 011017 406 ADAKGVKVISLGL------LNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDG-SS--------LA-AA 453 (495)
Q Consensus 406 a~~~g~kv~sl~~------ln~~~~l-------n~~g~~~~~~~p~---------~l~~~vv~g-~~--------l~-~a 453 (495)
+.+.|.+++.|.. +.|+|++ ++..-+.|-|||. ...|=|+++ ++ |+ ..
T Consensus 61 ~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~ 140 (306)
T PLN02527 61 MKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVY 140 (306)
T ss_pred HHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHH
Confidence 4679999999965 4577876 7888889999982 356778887 32 22 22
Q ss_pred hhhhcCCC-CCceEEEeccCCchhHHHHHHHHHhhc-CcEeee
Q 011017 454 VVVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQM-GIKVSF 494 (495)
Q Consensus 454 ~v~~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~-~~~v~~ 494 (495)
.+...... +-..|-+.|...-+++++..+..|++. |+.|.+
T Consensus 141 Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~ 183 (306)
T PLN02527 141 TIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYF 183 (306)
T ss_pred HHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEE
Confidence 23333432 235889999863259999999999987 888865
No 270
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=22.10 E-value=1.5e+02 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=23.8
Q ss_pred CCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 461 KTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 461 ~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++++-|.+||++ .+|+.|+...+++-.+|.+
T Consensus 235 ~~v~~v~fTGS~---~~G~~v~~~aa~~~~~~~l 265 (508)
T PLN02315 235 TRIPLVSFTGSS---KVGLMVQQTVNARFGKCLL 265 (508)
T ss_pred CCCCEEEEECCH---HHHHHHHHHHHhcCCCEEE
Confidence 466788999987 7889888887776666654
No 271
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.07 E-value=94 Score=25.59 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEe
Q 011017 395 INSLIEEAILEADAKGVKVISL 416 (495)
Q Consensus 395 in~~ie~ai~~a~~~g~kv~sl 416 (495)
-++++++|+..|++.|.||...
T Consensus 40 a~~L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
Confidence 4678899999999999999865
No 272
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=21.91 E-value=1.5e+02 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=14.8
Q ss_pred CCcccccCChhhhHHHhhcC
Q 011017 237 PPLKFLMYTPSYHSLHHTQF 256 (495)
Q Consensus 237 p~L~~li~tp~~H~lHH~~~ 256 (495)
.+..-+..+-..|..||+..
T Consensus 227 ww~al~t~GEgwHNnHHafp 246 (289)
T COG1398 227 WWVALVTFGEGWHNNHHAFP 246 (289)
T ss_pred eEEEEeecccccccccccCc
Confidence 34455567889999999974
No 273
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.91 E-value=3.1e+02 Score=26.74 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=48.6
Q ss_pred hcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCchhhHhh-----------hhcC--CCCCceEEEeccCCc
Q 011017 408 AKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSLAAAVV-----------VNSL--PKTTAHVLLRGTVTA 474 (495)
Q Consensus 408 ~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l~~a~v-----------~~~i--p~~~~~v~l~g~~~~ 474 (495)
+.|-+|+.++.++ .+++-.=|+.... +.-+++-++-+...|+. ++++ .+.-..|++.|++
T Consensus 81 ~~Gd~V~~~~~~~----~~g~~~~~~~~~~-~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~-- 153 (319)
T cd08267 81 KVGDEVFGRLPPK----GGGALAEYVVAPE-SGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGAS-- 153 (319)
T ss_pred CCCCEEEEeccCC----CCceeeEEEEech-hheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCC--
Confidence 4577777765542 1222223444444 55666666655533222 1222 2234688999987
Q ss_pred hhHHHHHHHHHhhcCcEeee
Q 011017 475 NKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 475 ~k~~~a~a~~lc~~~~~v~~ 494 (495)
+=+|.+++.....+|++|..
T Consensus 154 g~~g~~~~~la~~~g~~v~~ 173 (319)
T cd08267 154 GGVGTFAVQIAKALGAHVTG 173 (319)
T ss_pred cHHHHHHHHHHHHcCCEEEE
Confidence 47999999999999999864
No 274
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.90 E-value=1.3e+02 Score=31.35 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=35.4
Q ss_pred hhhHhhhh-----cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~-----~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+. .|+-.-|+|...|.. .-||+-+|..|-++|..|.+
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvVvGrs--~~VG~Pla~lL~~~gAtVtv 186 (285)
T PRK14191 139 ATPMGVMRLLKHYHIEIKGKDVVIIGAS--NIVGKPLAMLMLNAGASVSV 186 (285)
T ss_pred CcHHHHHHHHHHhCCCCCCCEEEEECCC--chhHHHHHHHHHHCCCEEEE
Confidence 46666654 346667899999998 59999999999999999976
No 275
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=21.79 E-value=3.1e+02 Score=28.44 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=61.6
Q ss_pred HHHhcCCeEEEec----cccccccc-------cccceeeeccCCC---------CcceEEecCCc--------hh-hHhh
Q 011017 405 EADAKGVKVISLG----LLNQGEEL-------NRNGEIYLERQPN---------KLKIKVVDGSS--------LA-AAVV 455 (495)
Q Consensus 405 ~a~~~g~kv~sl~----~ln~~~~l-------n~~g~~~~~~~p~---------~l~~~vv~g~~--------l~-~a~v 455 (495)
-|.+.|.+|+.++ -++|+|++ ++.+-+.|-|||+ ..++=|+++-+ |+ ...+
T Consensus 64 A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti 143 (304)
T PRK00779 64 GMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTI 143 (304)
T ss_pred HHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHH
Confidence 4678999999985 35677764 5667788889982 35677887754 11 1223
Q ss_pred hhcCCC-CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 456 VNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 456 ~~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
..+... +-..|-..|.. +.+++..+..|.+-|++|.+
T Consensus 144 ~e~~g~l~gl~i~~vGd~--~~v~~Sl~~~l~~~g~~v~~ 181 (304)
T PRK00779 144 YEHRGSLKGLKVAWVGDG--NNVANSLLLAAALLGFDLRV 181 (304)
T ss_pred HHHhCCcCCcEEEEEeCC--CccHHHHHHHHHHcCCEEEE
Confidence 334332 22368899996 68999999999999999876
No 276
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=21.77 E-value=2e+02 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=27.6
Q ss_pred cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 458 SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 458 ~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.++++ +.|+++|+. +-+|++++..+..+|.+|.+
T Consensus 141 ~~~~~-~~vli~g~~--~~~g~~~~~~~~~~g~~v~~ 174 (328)
T cd08268 141 GLRPG-DSVLITAAS--SSVGLAAIQIANAAGATVIA 174 (328)
T ss_pred CCCCC-CEEEEecCc--cHHHHHHHHHHHHcCCEEEE
Confidence 34433 579999997 58999999999999999864
No 277
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.74 E-value=1.4e+02 Score=30.91 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.7
Q ss_pred hhhHhhhh-----cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~-----~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+. .|+-.-|+|...|.. .-||+-+|..|-++|..|.+
T Consensus 139 cTp~avi~lL~~~~i~l~Gk~vvViGrS--~~VG~Pla~lL~~~~AtVti 186 (281)
T PRK14183 139 CTPLGVMELLEEYEIDVKGKDVCVVGAS--NIVGKPMAALLLNANATVDI 186 (281)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCC--CcchHHHHHHHHHCCCEEEE
Confidence 36666654 456677899999999 59999999999999999976
No 278
>PLN02278 succinic semialdehyde dehydrogenase
Probab=21.62 E-value=1.6e+02 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=31.3
Q ss_pred ceEEecCCchhh-HhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAA-AVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~-a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-+.+|.|+.-.+ ..++. .++++-|.+||++ .+|+.|+....+...+|.+
T Consensus 219 vv~~v~g~~~~~~~~L~~--~~~v~~V~fTGS~---~~G~~i~~~aa~~~~~~~l 268 (498)
T PLN02278 219 VLNVVMGDAPEIGDALLA--SPKVRKITFTGST---AVGKKLMAGAAATVKRVSL 268 (498)
T ss_pred cEEEEecCChhhHHHHhc--CCCcCEEEEECcH---HHHHHHHHHHhhcCCcEEE
Confidence 366676643222 22211 3467888999987 8899998877776666654
No 279
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.54 E-value=83 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEe
Q 011017 396 NSLIEEAILEADAKGVKVISL 416 (495)
Q Consensus 396 n~~ie~ai~~a~~~g~kv~sl 416 (495)
|+.+.+|+..|.++|+||+++
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~I 134 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIAL 134 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEE
No 280
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=21.54 E-value=2.1e+02 Score=25.42 Aligned_cols=77 Identities=22% Similarity=0.421 Sum_probs=49.9
Q ss_pred hhhhH--HHHHHHHHH-HHhcCCeEEEeccccccccccccceeeeccC-CCCcceEEecCCchhhHhhhhc-------CC
Q 011017 392 REAIN--SLIEEAILE-ADAKGVKVISLGLLNQGEELNRNGEIYLERQ-PNKLKIKVVDGSSLAAAVVVNS-------LP 460 (495)
Q Consensus 392 ~~~in--~~ie~ai~~-a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~-p~~l~~~vv~g~~l~~a~v~~~-------ip 460 (495)
.+.+| +.||+++.+ |++.|++|++.-. .|. | +| .|+.+++.| =|
T Consensus 16 ~~~L~d~~~l~~~l~~a~~~~g~ti~~~~~---------------h~F~p--------~G--vt~v~llaESHisiHTwP 70 (112)
T TIGR03330 16 PEKLDDVEFIEEILLEAAKVAGATLVASHF---------------HKFSP--------GG--VSGVVLLAESHISIHTWP 70 (112)
T ss_pred hHHCCCHHHHHHHHHHHHHHcCCEEEEEEE---------------EEcCC--------Cc--EEEEEEecccEEEEEecc
Confidence 34455 567787774 7888999987622 222 3 12 344444433 36
Q ss_pred C---CCceEEEecc-CCchhHHHHHHHHHhhcCcEee
Q 011017 461 K---TTAHVLLRGT-VTANKVANAVASSLCQMGIKVS 493 (495)
Q Consensus 461 ~---~~~~v~l~g~-~~~~k~~~a~a~~lc~~~~~v~ 493 (495)
+ -+=+||.+|. .+..|...++...|.-+.+++.
T Consensus 71 E~gyaavDiftCg~~~~p~~a~~~l~~~f~~~~~~~~ 107 (112)
T TIGR03330 71 EYGYAAVDVFTCGDHSDPEKAFEYLVEALKPKRVEVR 107 (112)
T ss_pred CCCcEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 6 2338999998 4667888888888888877764
No 281
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=21.41 E-value=1.7e+02 Score=31.83 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=19.9
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+++.|.+||++ ++|++|+.+..++..+|++
T Consensus 201 ~i~~V~fTGs~---~~G~~i~~~a~~~~~~~~l 230 (457)
T PRK09406 201 RVAAATLTGSE---PAGRAVAAIAGDEIKKTVL 230 (457)
T ss_pred CcCEEEEECcH---HHHHHHHHHHHhcCCceee
Confidence 46667777776 6777777766555555543
No 282
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=21.37 E-value=3.1e+02 Score=24.07 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEecCCch-----hhHhhhhcCC--CCC
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVDGSSL-----AAAVVVNSLP--KTT 463 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~g~~l-----~~a~v~~~ip--~~~ 463 (495)
..-+|++++|+. -.++++..+=-... ..-...+.+.+ +++++.|+++.- ..+-.+.+++ .+.
T Consensus 12 alPAi~~iLe~l-----p~~~~~~v~iev~~-----~~d~~~l~~~~-~~~v~wv~r~~~~~~~~~l~~al~~~~~~~~~ 80 (119)
T PF04954_consen 12 ALPAIARILEAL-----PADAPGTVFIEVPD-----EADRQPLPAPA-GVEVTWVPRDGPAAQGSALADALRDLPLPAGD 80 (119)
T ss_dssp GHHHHHHHHHHS------TT-EEEEEEEESS-----GGG-------T-EEEEEEEE-SS--TT-HHHHHHHTTS---SS-
T ss_pred cHHHHHHHHHhC-----CCCCeEEEEEEECC-----hHhcccCCCCC-CCEEEEEeCCCCCchHHHHHHHHHHhhccCCC
Confidence 334577777665 23333333222221 22255666677 999988877754 2333445554 677
Q ss_pred ceEEEeccCCchhHHHHHHHHHh-hcCc
Q 011017 464 AHVLLRGTVTANKVANAVASSLC-QMGI 490 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc-~~~~ 490 (495)
..|++.|.. +..|+|=.+|- ++|+
T Consensus 81 ~~vW~AgE~---~~~r~lR~~l~~~~g~ 105 (119)
T PF04954_consen 81 GYVWVAGEA---SAVRALRRHLREERGL 105 (119)
T ss_dssp EEEEEEEEH---HHHHHHHHHHHHH---
T ss_pred eEEEEEecH---HHHHHHHHHHHHhhCC
Confidence 899999987 77888888886 4454
No 283
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=21.33 E-value=68 Score=28.06 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=30.9
Q ss_pred EeeccCceeccchhhhhhHHHHHHHHH-HHHhcCCeEEEecc
Q 011017 378 VVPRYIVQYNLPWRREAINSLIEEAIL-EADAKGVKVISLGL 418 (495)
Q Consensus 378 ~~pr~~~~y~~~~~~~~in~~ie~ai~-~a~~~g~kv~sl~~ 418 (495)
++.+|...=++...++.|+..|++.+. +.++.|++|.+...
T Consensus 66 ~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i 107 (124)
T cd03400 66 VTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLL 107 (124)
T ss_pred HhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEE
Confidence 455565544443468999999999888 68889999999754
No 284
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.12 E-value=32 Score=36.80 Aligned_cols=106 Identities=24% Similarity=0.248 Sum_probs=71.4
Q ss_pred eeEEeeccCceeccchhhhhh-----------HHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceE
Q 011017 375 QTWVVPRYIVQYNLPWRREAI-----------NSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIK 443 (495)
Q Consensus 375 ~~w~~pr~~~~y~~~~~~~~i-----------n~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~ 443 (495)
+||+|=|||+.-.||-.-+=| ...|++||.-|.+.||-+.++|-+-+---- .|.|.-.|-- .-+||
T Consensus 37 Ht~aI~r~Gir~lLP~~ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs--~~SL~~ara~-GadVr 113 (364)
T PRK15062 37 HTHAIFRYGLRSLLPENIELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGS--KGSLLEAKAE-GADVR 113 (364)
T ss_pred chHHHHHhChHhhCCCCcEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCC--cCCHHHHHhC-CCCEE
Confidence 899999999988888776544 589999999999999999999988765532 4466666666 78899
Q ss_pred EecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh
Q 011017 444 VVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ 487 (495)
Q Consensus 444 vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~ 487 (495)
||-. .|=|--+-.+-|. |||.+-|-. |.--+=++|..+-+
T Consensus 114 iVYS-pldAl~iA~~nP~--k~vVF~avG-FETTaP~~A~~i~~ 153 (364)
T PRK15062 114 IVYS-PLDALKIARENPD--KEVVFFAIG-FETTAPATAATLLQ 153 (364)
T ss_pred EEeC-HHHHHHHHHHCCC--CeEEEEecC-chhccHHHHHHHHH
Confidence 9963 4444444444443 444444421 11224455555433
No 285
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.09 E-value=91 Score=26.84 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEeccc
Q 011017 391 RREAINSLIEEAILEADAKGVKVISLGLL 419 (495)
Q Consensus 391 ~~~~in~~ie~ai~~a~~~g~kv~sl~~l 419 (495)
...+=++.+-+++..|.++|+||+++-.-
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 34456778889999999999999998764
No 286
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.07 E-value=1.3e+02 Score=31.11 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=35.2
Q ss_pred hhhHhhhh-----cCCCCCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 450 LAAAVVVN-----SLPKTTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 450 l~~a~v~~-----~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
-|+++|+. .|+-.-|+|.+.|.. .=+|+.+|..|.++|..|.+
T Consensus 140 cTp~avi~lL~~~~i~l~Gk~v~vIG~S--~ivG~Pla~lL~~~gatVtv 187 (284)
T PRK14179 140 CTPAGIMEMFREYNVELEGKHAVVIGRS--NIVGKPMAQLLLDKNATVTL 187 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCC--CcCcHHHHHHHHHCCCEEEE
Confidence 46666664 445667899999997 47999999999999999986
No 287
>PRK07589 ornithine cyclodeaminase; Validated
Probab=21.03 E-value=2.7e+02 Score=29.59 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=53.0
Q ss_pred hcCCeEEEecccccccccccc-ceeeeccCCCCcceEEecCCchhh-------HhhhhcC-CCCCceEEEeccCCchhHH
Q 011017 408 AKGVKVISLGLLNQGEELNRN-GEIYLERQPNKLKIKVVDGSSLAA-------AVVVNSL-PKTTAHVLLRGTVTANKVA 478 (495)
Q Consensus 408 ~~g~kv~sl~~ln~~~~ln~~-g~~~~~~~p~~l~~~vv~g~~l~~-------a~v~~~i-p~~~~~v~l~g~~~~~k~~ 478 (495)
..|+|++|.--=|....|-.- |.+.+.--.+..-+=++||+.||+ |+-.+-+ +++.+.+.+.|+. ..|
T Consensus 65 ~~gvK~v~~~p~N~~~glP~i~g~v~L~D~~TG~p~Alldg~~lT~~RTaA~sala~~~Lar~da~~l~iiGaG---~QA 141 (346)
T PRK07589 65 LYSFKYVNGHPKNTRRGLQTVMAFGVLADVDTGYPLLLSEMTLLTALRTAATSALAAKYLARPDSRTMALIGNG---AQS 141 (346)
T ss_pred ceEEEEEeeCCCccccCCCceeEEEEEEECCCCCEEEEEcCccHHHHHHHHHHHHHHHHhccCCCcEEEEECCc---HHH
Confidence 478999987655655544333 333333222356677899999974 3334555 7899999999997 889
Q ss_pred HHHHHHHhh
Q 011017 479 NAVASSLCQ 487 (495)
Q Consensus 479 ~a~a~~lc~ 487 (495)
+.-+.++|+
T Consensus 142 ~~~l~a~~~ 150 (346)
T PRK07589 142 EFQALAFKA 150 (346)
T ss_pred HHHHHHHHH
Confidence 888888875
No 288
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=20.84 E-value=2e+02 Score=33.59 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEeccccccccccccceeeeccCC-C-------------CcceEEecCCch-hhHhhhhc
Q 011017 394 AINSLIEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQP-N-------------KLKIKVVDGSSL-AAAVVVNS 458 (495)
Q Consensus 394 ~in~~ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p-~-------------~l~~~vv~g~~l-~~a~v~~~ 458 (495)
.+.+.|++.+.+-.+.|-+|+.++--|.+..|-==|-+-. ++| . +.||+++.|+.. ||..|-++
T Consensus 400 ~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l~~~Gli~l-~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~ 478 (755)
T TIGR01647 400 EIEEKVEEKVDELASRGYRALGVARTDEEGRWHFLGLLPL-FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARR 478 (755)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEeec-cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH
Confidence 3456777778777889999999997543322222233332 333 1 456666666653 55555555
Q ss_pred C
Q 011017 459 L 459 (495)
Q Consensus 459 i 459 (495)
+
T Consensus 479 l 479 (755)
T TIGR01647 479 L 479 (755)
T ss_pred c
Confidence 4
No 289
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=20.79 E-value=1.6e+02 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.5
Q ss_pred ceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 464 AHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 464 ~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
+.|+++|++ +-+|++++..+.++|.+|..
T Consensus 164 ~~vlI~ga~--g~vG~~~~~~a~~~g~~v~~ 192 (332)
T cd08259 164 DTVLVTGAG--GGVGIHAIQLAKALGARVIA 192 (332)
T ss_pred CEEEEECCC--CHHHHHHHHHHHHcCCeEEE
Confidence 468999998 58999999999999999864
No 290
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=20.61 E-value=1.3e+02 Score=28.94 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=32.7
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHH
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAV 481 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~ 481 (495)
-+..|.=|||.|..---+.+.-.|++-|.|||=. -++.|+
T Consensus 58 vvDlkL~~gsGL~~i~~lr~~~~d~rivvLTGy~---sIATAV 97 (182)
T COG4567 58 VVDLKLGDGSGLAVIEALRERRADMRIVVLTGYA---SIATAV 97 (182)
T ss_pred EEEeeecCCCchHHHHHHHhcCCcceEEEEecch---HHHHHH
Confidence 5677888899999888888999999999999977 355554
No 291
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=20.51 E-value=1.4e+02 Score=26.09 Aligned_cols=43 Identities=21% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCeEEEeccccccccccccceeeeccCCCCcceEEec
Q 011017 399 IEEAILEADAKGVKVISLGLLNQGEELNRNGEIYLERQPNKLKIKVVD 446 (495)
Q Consensus 399 ie~ai~~a~~~g~kv~sl~~ln~~~~ln~~g~~~~~~~p~~l~~~vv~ 446 (495)
||++..++++.|+++++ .. +..++|+..+.-|.|++-.+.++.
T Consensus 80 vda~~~~l~~~G~~v~~-~p----~~~~~~~~~~~i~dp~G~~ie~~~ 122 (136)
T cd08342 80 AAAAYERAVARGAKPVQ-EP----VEEPGELKIAAIKGYGDSLHTLVD 122 (136)
T ss_pred HHHHHHHHHHcCCeEcc-Cc----eecCCeEEEEEEeccCCcEEEEEe
Confidence 89999999999999985 22 224566667777899655555554
No 292
>PLN02256 arogenate dehydrogenase
Probab=20.49 E-value=1.9e+02 Score=29.93 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=40.3
Q ss_pred ccCCCCcceEEecCCchh-hHh-hhhcCCC-CCceEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 434 ERQPNKLKIKVVDGSSLA-AAV-VVNSLPK-TTAHVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 434 ~~~p~~l~~~vv~g~~l~-~a~-v~~~ip~-~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
.|.|..||||-+|...-- --. .-.++-+ ....|-+.|.. .+|.++|.+|-+.|.+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G---~mG~slA~~L~~~G~~V~~ 64 (304)
T PLN02256 4 SRRPRSLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFG---NFGQFLAKTFVKQGHTVLA 64 (304)
T ss_pred CCCCCCcccccccccCCCChHhHHhHhhccCCCCEEEEEeeC---HHHHHHHHHHHhCCCEEEE
Confidence 466778999998853211 111 2334433 45588899965 8999999999999988764
No 293
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.46 E-value=2.4e+02 Score=29.57 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=43.5
Q ss_pred ceEEecCCchhhHhhhhcCCCCCc--eEEEeccCCchhHHHHHHHHHhhcCcEeee
Q 011017 441 KIKVVDGSSLAAAVVVNSLPKTTA--HVLLRGTVTANKVANAVASSLCQMGIKVSF 494 (495)
Q Consensus 441 ~~~vv~g~~l~~a~v~~~ip~~~~--~v~l~g~~~~~k~~~a~a~~lc~~~~~v~~ 494 (495)
++=+.||+|=|+..++..--+.-| .|++|=+-- ++-|+..|..|.+.||+|.+
T Consensus 121 ~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP-~~eG~~~ak~L~~~gI~~~~ 175 (301)
T COG1184 121 DVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRP-RGEGRIMAKELRQSGIPVTV 175 (301)
T ss_pred CEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCC-cchHHHHHHHHHHcCCceEE
Confidence 455778899899888888766666 889985543 68899999999999999875
No 294
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=20.38 E-value=2.2e+02 Score=31.35 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=33.3
Q ss_pred CcceEEecCCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhh-cCcEeee
Q 011017 439 KLKIKVVDGSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQ-MGIKVSF 494 (495)
Q Consensus 439 ~l~~~vv~g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~-~~~~v~~ 494 (495)
+=-+.+|.|+.-.+.-.|-+ .++++-|.+||++ .+|++|+....+ +..+|.+
T Consensus 204 ~gv~~~v~g~~~~~~~~L~~-~~~v~~v~ftGs~---~~g~~i~~~aa~~~l~~v~l 256 (486)
T cd07140 204 KGVINILPGSGSLVGQRLSD-HPDVRKLGFTGST---PIGKHIMKSCAVSNLKKVSL 256 (486)
T ss_pred CCcEEEEecCchHHHHHHhc-CCCCCEEEEECcH---HHHHHHHHHHHhcCCCeEEE
Confidence 44566777654332222211 3578889999998 889999887665 5566654
No 295
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=20.38 E-value=1.4e+02 Score=30.45 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=44.4
Q ss_pred eeeccCCCCcceEEec-----CCchhhHhhhhcCCCCCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 431 IYLERQPNKLKIKVVD-----GSSLAAAVVVNSLPKTTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 431 ~~~~~~p~~l~~~vv~-----g~~l~~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
....++||.+++..+. +-.+.++-....+|....+++++|.. +.=.|+-..|-+.|+.
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~r~~y~CGp~---~fm~av~~~l~~~g~~ 221 (266)
T COG1018 159 ELAAELPNALLLGLYTERGKLQGRIDVSRLLSAAPDGGREVYLCGPG---PFMQAVRLALEALGVP 221 (266)
T ss_pred HHHhhCCCCeeEEEEEecCCccccccHHHHhccCCCCCCEEEEECCH---HHHHHHHHHHHHcCCC
Confidence 5577899668887775 34455666666777655999999998 8889999999888874
No 296
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=20.21 E-value=1.7e+02 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=24.3
Q ss_pred ceEEecCCchh-hHhhhhcCCCCCceEEEeccCCchhHHHHHHHHH
Q 011017 441 KIKVVDGSSLA-AAVVVNSLPKTTAHVLLRGTVTANKVANAVASSL 485 (495)
Q Consensus 441 ~~~vv~g~~l~-~a~v~~~ip~~~~~v~l~g~~~~~k~~~a~a~~l 485 (495)
-+.+|+|..-. ...++.+ ++++.|.+||.+ +.|++|+.+.
T Consensus 182 ~~~~v~g~~~~~~~~l~~~--~~v~~V~fTGs~---~~g~~v~~~a 222 (453)
T cd07094 182 VLQVVTGEREVLGDAFAAD--ERVAMLSFTGSA---AVGEALRANA 222 (453)
T ss_pred cEEEEeCCCchHHHHHhcC--CCCCEEEEECcH---HHHHHHHHHc
Confidence 36667664322 2223222 367788888877 7788887765
No 297
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=20.17 E-value=1.1e+02 Score=33.35 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCceEEEeccCCchhHHHHHHHHHhhcCcE
Q 011017 462 TTAHVLLRGTVTANKVANAVASSLCQMGIK 491 (495)
Q Consensus 462 ~~~~v~l~g~~~~~k~~~a~a~~lc~~~~~ 491 (495)
.-+.|++.|+. +.|+++|.+|+++|+.
T Consensus 180 ~~kkvlviGaG---~~a~~va~~L~~~g~~ 206 (414)
T PRK13940 180 SSKNVLIIGAG---QTGELLFRHVTALAPK 206 (414)
T ss_pred cCCEEEEEcCc---HHHHHHHHHHHHcCCC
Confidence 34679999997 9999999999999974
No 298
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=20.01 E-value=2.6e+02 Score=24.16 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=33.4
Q ss_pred EeeccCceeccchhhhhhHHHHHHHHHHHHhcCCeEEEecccccc
Q 011017 378 VVPRYIVQYNLPWRREAINSLIEEAILEADAKGVKVISLGLLNQG 422 (495)
Q Consensus 378 ~~pr~~~~y~~~~~~~~in~~ie~ai~~a~~~g~kv~sl~~ln~~ 422 (495)
+.||++-++ +.+.+.+.+-+++...+|++++++.|.+=++.-+
T Consensus 78 ~~p~~~~~~--~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG 120 (133)
T smart00506 78 VGPRASGHS--NEGFELLENAYRNCLELAIELGITSVAIPLIGTG 120 (133)
T ss_pred CCCCCCCCC--ccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 345665444 5778889999999999999999999988776543
Done!