Query 011019
Match_columns 495
No_of_seqs 187 out of 685
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 3E-56 6.6E-61 475.8 2.0 333 141-479 149-502 (577)
2 PF04515 Choline_transpo: Plas 100.0 9.3E-51 2E-55 416.6 -4.4 260 217-476 9-281 (334)
3 PF01102 Glycophorin_A: Glycop 31.2 17 0.00036 32.0 0.1 26 209-234 69-94 (122)
4 PRK13344 spxA transcriptional 22.2 28 0.0006 30.9 -0.2 32 418-449 2-33 (132)
5 cd03036 ArsC_like Arsenate Red 22.0 29 0.00062 29.7 -0.1 31 419-449 2-32 (111)
6 PRK01655 spxA transcriptional 21.0 33 0.00072 30.3 0.1 31 418-448 2-32 (131)
7 TIGR02220 phg_TIGR02220 phage 19.8 67 0.0015 25.9 1.6 38 404-448 2-39 (77)
8 PRK12559 transcriptional regul 17.2 39 0.00084 29.9 -0.4 32 418-449 2-33 (131)
9 PF05568 ASFV_J13L: African sw 16.6 32 0.00069 31.0 -1.0 39 209-247 34-72 (189)
10 cd02977 ArsC_family Arsenate R 16.6 43 0.00094 28.0 -0.2 30 419-448 2-31 (105)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=3e-56 Score=475.77 Aligned_cols=333 Identities=26% Similarity=0.395 Sum_probs=269.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhhhheeeeeccceeeecceeee-eee-eeeecccc--Cc--Cchh----hHHHH-H
Q 011019 141 IWVLVITLILSVPICFLLLLLLKHYTKQLVYVALPFFVIVPTFINV-YWF-VACTVSSS--CS--DSLP----LVYRI-L 209 (495)
Q Consensus 141 ~~~i~~~~~is~~ls~~~l~llr~~a~~lv~~~i~~~~~~~~~~~i-~~~-~~~~~~~~--~~--~~~~----~~~~~-~ 209 (495)
|..++..+.++.++|++++.++|++++.++|..+++.+++++.... .|+ +...+... .. .... ....+ .
T Consensus 149 w~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 228 (577)
T KOG1362|consen 149 WYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLD 228 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHH
Confidence 7888999999999999999999999999999988877766555432 111 11122211 00 0000 11112 2
Q ss_pred HHHHHHHHH-HHhhheeeeceeeeEEEEEEeeecchhhhhcccceeehhhhhhhhe-eeeeceeeEeeeeeccCeeeecc
Q 011019 210 VLVFVFLII-GVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLV-VYYAPIVVFLVFARLNGKIVPKE 287 (495)
Q Consensus 210 ~~~i~~~i~-~i~l~~~~~~r~RI~~ai~ll~~a~~~l~~~~~l~l~~p~~~~~~~-~~~v~~~~~~~~~~~~G~~~~~~ 287 (495)
..+|++.++ .+.+++++.+|+||+++++++|+|++++.+.|+++ +.|..+++.+ ++++.|+...+++++.| .+ .+
T Consensus 229 ~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~-~~p~~~~~v~~~~i~~wv~~~~~l~t~~-~~-~~ 305 (577)
T KOG1362|consen 229 AVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTL-FPPALTFFVLLLFISLWVFVALFLVTSG-PN-SE 305 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc-cC
Confidence 245555554 44667778899999999999999999999999987 5688877664 46667877777777777 22 22
Q ss_pred cCCceeeEeccCcchhHHHHHHHHH-HHHhhhhcceeEEEEEeeeeeeeeeccCC-CCCcchhhhhhhhhcCCCCcceee
Q 011019 288 SNGEYKCVWKQDSWVPAYFALAILT-MLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICL 365 (495)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~lf~-~~Wt~~fl~~~~~~tiAg~va~WYF~~~~-~~~~~pv~~S~~ra~~yh~GSi~~ 365 (495)
++.. |++..+++ ...++++++. ++|++||+.|++|+++||++++|||++++ +.|..|+..|++|+++||+||+|+
T Consensus 306 -gg~~-~~~~~~~~-~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 306 -GGCA-CTYSGGSL-RILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred -CCce-eeccCCcc-hhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHhccchhh
Confidence 1112 66766663 3334455555 99999999999999999999999999986 889999999999999999999999
Q ss_pred cchhhhHhHHHHHHhhhccccCC------chhhHHHHHHHHHHHHHhhhhccceeeeeeeecccccccchhhhHHHHHhh
Q 011019 366 SGLLICMVRIVRAAVDSARQEDV------PGFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRN 439 (495)
Q Consensus 366 GSLivaiv~~lR~il~~~~~~~~------~~~~~~~~~ccl~cle~~l~~~Nk~Ayi~iAi~G~~F~~Sak~a~~L~~rn 439 (495)
|||++++|+++|.++|+++++.+ .+++.||++||+||+|++++|+|||||+|+|||||+||+|||+||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 99999999999999999987643 258999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhcchhH
Q 011019 440 LLSAVFVETVSTRLLAGIIFVISAVYTIAVIGILAGGLKY 479 (495)
Q Consensus 440 ~~~~~~~d~i~~~vL~~~~~~vs~~~~~~~~~~l~~~~~~ 479 (495)
..+++..|.++|++++++|+++++..|+..+.++....+|
T Consensus 463 v~~vv~~d~vs~~llflgk~l~~~~~g~~g~~~l~~~~~~ 502 (577)
T KOG1362|consen 463 VLRVVDVDLVSDFLLFLGKLLGAIGSGVAGIWLLIGRKDV 502 (577)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999888774
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=9.3e-51 Score=416.59 Aligned_cols=260 Identities=24% Similarity=0.475 Sum_probs=230.2
Q ss_pred HHHHhhheeeeceeeeEEEEEEeeecchhhhhcccceeehhhhhhhheeeeeceeeEeeeeeccCeeeecccCC------
Q 011019 217 IIGVLVWIFVANWHRIELTVQIIGIASDALSKNLGLFVALPLLTLGLVVYYAPIVVFLVFARLNGKIVPKESNG------ 290 (495)
Q Consensus 217 i~~i~l~~~~~~r~RI~~ai~ll~~a~~~l~~~~~l~l~~p~~~~~~~~~~v~~~~~~~~~~~~G~~~~~~~~~------ 290 (495)
+.++.++++++.||||++|++++|+|+++++++|++++++++..++.+++.++|+....+++++|+.+.++.++
T Consensus 9 ~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~~~~~~~~ 88 (334)
T PF04515_consen 9 LALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCNLPFSSGS 88 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCccccc
Confidence 33445566678999999999999999999999999996644444444567788887777888888887654322
Q ss_pred ceeeEeccCcchhHHHHHHHHHHHHhhhhcceeEEEEEeeeeeeeeeccCC-CCCcchhhhhhhhhcCCCCcceeecchh
Q 011019 291 EYKCVWKQDSWVPAYFALAILTMLWSLTSMVEAKAYVISGTIAQWYFSKED-TKPKRSIRSSLRNAFGPSSGSICLSGLL 369 (495)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~lf~~~Wt~~fl~~~~~~tiAg~va~WYF~~~~-~~~~~pv~~S~~ra~~yh~GSi~~GSLi 369 (495)
.+.++++.+++...+.++++|+++|+++|++|++|+++||++++|||++++ ++|+.|+.+|++|+++|||||+|+|||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GSi~~gSli 168 (334)
T PF04515_consen 89 ISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGSICFGSLI 168 (334)
T ss_pred ccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 123677788888888899999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred hhHhHHHHHHhhhccccCC-c-----hhhHHHHHHHHHHHHHhhhhccceeeeeeeecccccccchhhhHHHHHhhhhhH
Q 011019 370 ICMVRIVRAAVDSARQEDV-P-----GFVNLILRCCVNALLSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLSA 443 (495)
Q Consensus 370 vaiv~~lR~il~~~~~~~~-~-----~~~~~~~~ccl~cle~~l~~~Nk~Ayi~iAi~G~~F~~Sak~a~~L~~rn~~~~ 443 (495)
+++++++|.++++++++.+ + +++.||++||++|+|+++||+||+||+++||||++||+|||++++|++||+.++
T Consensus 169 vaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~~~n~~~~ 248 (334)
T PF04515_consen 169 VAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELIKRNGLRA 248 (334)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhchHH
Confidence 9999999999999987654 2 377899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhcc
Q 011019 444 VFVETVSTRLLAGIIFVISAVYTIAVIGILAGG 476 (495)
Q Consensus 444 ~~~d~i~~~vL~~~~~~vs~~~~~~~~~~l~~~ 476 (495)
..+|++++.+++++++.++++++++.+.+++.+
T Consensus 249 ~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~ 281 (334)
T PF04515_consen 249 IIVDGLGSFVLFLGKLFISLLCGLIAYLILSNS 281 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998764
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.20 E-value=17 Score=32.00 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhheeeeceeeeEE
Q 011019 209 LVLVFVFLIIGVLVWIFVANWHRIEL 234 (495)
Q Consensus 209 ~~~~i~~~i~~i~l~~~~~~r~RI~~ 234 (495)
++.|+++.++++++++.|++|+|++.
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555555555555666666655
No 4
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.19 E-value=28 Score=30.91 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=28.4
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i 449 (495)
+-|||.+-|..+|+|.+.+.+|++.+-..|-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 56899999999999999999999998887743
No 5
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=22.02 E-value=29 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=27.2
Q ss_pred eecccccccchhhhHHHHHhhhhhHHHHHHH
Q 011019 419 AITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (495)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~rn~~~~~~~d~i 449 (495)
-|||.+-|..+|+|.+++.+|++.+-..|-.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 4899999999999999999999988877643
No 6
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=20.99 E-value=33 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=27.9
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
+-+||.+-|..+++|.+++.++++.+-..|-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeec
Confidence 5699999999999999999999999877764
No 7
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=19.82 E-value=67 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHhhhhccceeeeeeeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 404 LSAVDFLNKFTINFAAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 404 e~~l~~~Nk~Ayi~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
+.+++|+|+.+ |+.|-.+++.+.++++.+.-+-..++.
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~eg~~~~d 39 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNEGYTLED 39 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHcCCCHHH
Confidence 46789999865 999999999999999987665544443
No 8
>PRK12559 transcriptional regulator Spx; Provisional
Probab=17.22 E-value=39 Score=29.93 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=27.9
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i 449 (495)
+-|||.+-|..+|+|.+++.++++..-..|-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 56999999999999999999999987776643
No 9
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=16.57 E-value=32 Score=30.96 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhheeeeceeeeEEEEEEeeecchhhh
Q 011019 209 LVLVFVFLIIGVLVWIFVANWHRIELTVQIIGIASDALS 247 (495)
Q Consensus 209 ~~~~i~~~i~~i~l~~~~~~r~RI~~ai~ll~~a~~~l~ 247 (495)
++.+|+..++.++++++||.+++-+.++++-|+..+.+.
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaaAAi~eediQfin 72 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFIN 72 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccC
Confidence 344555556566777788877776777777787777654
No 10
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=16.55 E-value=43 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=26.7
Q ss_pred eecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 419 AITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
-+||.+-|..+++|.+++.++++.+-.+|-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~~~idi 31 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIEYEFIDY 31 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 589999999999999999999988877663
Done!