Query 011019
Match_columns 495
No_of_seqs 187 out of 685
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fz4_A Putative arsenate reduc 18.8 18 0.00063 30.1 -0.8 32 417-448 4-35 (120)
2 2lqo_A Putative glutaredoxin R 17.7 47 0.0016 26.1 1.5 30 418-447 6-35 (92)
3 3l78_A Regulatory protein SPX; 17.2 22 0.00076 29.5 -0.6 32 417-448 1-32 (120)
4 3r45_A Histone H3-like centrom 14.2 37 0.0013 29.8 0.0 36 1-39 1-36 (156)
5 2bn8_A CEDA, cell division act 13.5 99 0.0034 23.4 2.1 37 23-69 5-45 (87)
6 3f0i_A Arsenate reductase; str 12.7 43 0.0015 27.7 -0.1 34 417-450 5-38 (119)
7 3gkx_A Putative ARSC family re 12.5 33 0.0011 28.5 -0.8 32 417-448 5-36 (120)
8 1rw1_A Conserved hypothetical 11.8 38 0.0013 27.6 -0.6 33 418-450 2-34 (114)
9 2kok_A Arsenate reductase; bru 11.4 40 0.0014 27.8 -0.7 33 417-449 6-38 (120)
10 3rdw_A Putative arsenate reduc 11.1 41 0.0014 27.9 -0.7 31 418-448 7-37 (121)
No 1
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=18.84 E-value=18 Score=30.08 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=28.0
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
++-|||.+-|..+|+|.+++.+++...-..|-
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di 35 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAIDI 35 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCEEEEET
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCceEEEEe
Confidence 57899999999999999999999988766553
No 2
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=17.72 E-value=47 Score=26.13 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.6
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d 447 (495)
|-||+++.|.-++++-+++.++++..-.+|
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~y~~id 35 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIAYDEVD 35 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCceEEEE
Confidence 678899999999999999999988765433
No 3
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=17.19 E-value=22 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=27.6
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
++-+||.+-|..+++|-+++.+++...-..|-
T Consensus 1 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di 32 (120)
T 3l78_A 1 MVTLFLSPSCTSCRKARAWLNRHDVVFQEHNI 32 (120)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEec
Confidence 46799999999999999999999988766554
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=14.19 E-value=37 Score=29.80 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=0.0
Q ss_pred CCCCCCCCCceeeeccCCCCCCCccccCCCCCCCCCCCC
Q 011019 1 MGSSEEDPNKLVCFYESSSSPSQPLLIKPTSPIPEPTTP 39 (495)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (495)
||++. .-..+.++..+ ..+..| ..||+.|.+.+|+|
T Consensus 1 ~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~r~~~~~ 36 (156)
T 3r45_A 1 MGSSH-HHHHHSQDPNS-MGPRRR-SRKPEAPRRRSPSP 36 (156)
T ss_dssp ---------------------------------------
T ss_pred CCccc-ccccccCCCCC-CCCccc-CcCCCCCCCCCCCC
Confidence 67775 44445555555 444444 45566666665543
No 5
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=13.49 E-value=99 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=11.7
Q ss_pred CccccCCCCCCCC----CCCCCCCCCCCCCCcceEEEEeecCCCcCCCchH
Q 011019 23 QPLLIKPTSPIPE----PTTPSAASPPEPDPTQFLQITYNYGPRPFKDIPF 69 (495)
Q Consensus 23 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~q~~~~~~~~~~R~~~D~~~ 69 (495)
+|+++||--++-+ +-| .+++.+|+- ...--+++|+|-
T Consensus 5 ~~~~mkplrqqnrpvisyvp--rvepapp~h--------a~kmd~frdvw~ 45 (87)
T 2bn8_A 5 KPVMKKPLRQQNRQIISYVP--RTEPAPPEH--------AIKMDSFRDVWM 45 (87)
T ss_dssp ----------------CCCC--CCCCBTTBS--------CBCTTTCTTEEE
T ss_pred HHHHhhhHHhcCCcceeecc--CCCCCCchH--------hhhcccchhhee
Confidence 5788887666533 223 444444422 233367889873
No 6
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=12.65 E-value=43 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=28.9
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHHHh
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i~ 450 (495)
.+-+||.+-|..+|+|.+++.+++...-..|-.-
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~ 38 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKYLE 38 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCCEEECHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEEecc
Confidence 4779999999999999999999998877665443
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=12.53 E-value=33 Score=28.45 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=27.9
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
.+-|||.+-|..+|+|.+++.+++...-..|-
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di 36 (120)
T 3gkx_A 5 KTLFLQYPACSTCQKAKKWLIENNIEYTNRLI 36 (120)
T ss_dssp CCEEEECTTCHHHHHHHHHHHHTTCCCEEEET
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCceEEEec
Confidence 36799999999999999999999988776654
No 8
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=11.80 E-value=38 Score=27.59 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=27.7
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHHHh
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i~ 450 (495)
+-+||.+-|..+++|-+++.++++..-..|-..
T Consensus 2 i~iY~~~~C~~C~kak~~L~~~gi~~~~~di~~ 34 (114)
T 1rw1_A 2 YVLYGIKACDTMKKARTWLDEHKVAYDFHDYKA 34 (114)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCceEEEeecC
Confidence 458999999999999999999998876666443
No 9
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=11.38 E-value=40 Score=27.77 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.1
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHHH
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETV 449 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i 449 (495)
.+-+||.+-|..+++|.+++.++++..-..|-.
T Consensus 6 ~i~iY~~~~C~~C~ka~~~L~~~gi~y~~~di~ 38 (120)
T 2kok_A 6 SVTIYGIKNCDTMKKARIWLEDHGIDYTFHDYK 38 (120)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCEEEEEHH
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCcEEEEeee
Confidence 367999999999999999999999887666544
No 10
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=11.06 E-value=41 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=27.2
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVET 448 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~ 448 (495)
+-|||.+-|..+|+|.+++.+++..+-..|-
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di 37 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITPQVVLY 37 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCCEEECT
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEEee
Confidence 6699999999999999999999988766554
Done!