Query 011019
Match_columns 495
No_of_seqs 187 out of 685
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 19:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ea1 c.47.1.12 (A:1-114) Re 15.2 12 0.00091 28.8 -0.6 34 417-450 1-34 (114)
2 d1rw1a_ c.47.1.12 (A:) Hypothe 11.4 17 0.0012 27.9 -1.0 35 419-453 3-37 (114)
3 d1nm3a1 c.47.1.1 (A:166-239) C 10.5 47 0.0034 22.8 1.4 30 418-447 7-36 (74)
4 d1egoa_ c.47.1.1 (A:) Glutared 10.0 65 0.0047 22.7 2.1 25 418-442 3-27 (85)
5 d1ubdc2 g.37.1.1 (C:323-350) Y 9.1 57 0.0042 18.2 1.1 13 418-430 5-17 (28)
6 d1r7ha_ c.47.1.1 (A:) Glutared 8.0 62 0.0045 22.0 1.2 30 418-447 3-32 (74)
7 d1j9ba_ c.47.1.12 (A:) Arsenat 7.5 35 0.0025 27.1 -0.6 34 418-451 2-35 (138)
8 d1h75a_ c.47.1.1 (A:) Glutared 6.4 81 0.0059 21.5 1.2 30 418-447 3-32 (76)
9 d1fova_ c.47.1.1 (A:) Glutared 5.8 91 0.0066 21.5 1.1 30 418-447 3-32 (82)
10 d1v54d_ f.23.1.1 (D:) Mitochon 4.9 2.5E+02 0.018 22.1 3.4 26 141-166 75-100 (144)
No 1
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=15.20 E-value=12 Score=28.76 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=28.9
Q ss_pred eeeecccccccchhhhHHHHHhhhhhHHHHHHHh
Q 011019 417 FAAITGEAYCSSARMTYELLKRNLLSAVFVETVS 450 (495)
Q Consensus 417 ~iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i~ 450 (495)
|+-+||.+=|.++|+|.+.+..|+..+-..|-.-
T Consensus 1 Mi~ly~~~~C~~~rka~~~L~~~~i~~~~~d~~~ 34 (114)
T d1z3ea1 1 MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFS 34 (114)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCEEEEETTT
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCCeEEEeeec
Confidence 4668999999999999999999999887766433
No 2
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.35 E-value=17 Score=27.88 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=30.0
Q ss_pred eecccccccchhhhHHHHHhhhhhHHHHHHHhhhh
Q 011019 419 AITGEAYCSSARMTYELLKRNLLSAVFVETVSTRL 453 (495)
Q Consensus 419 Ai~G~~F~~Sak~a~~L~~rn~~~~~~~d~i~~~v 453 (495)
-+||.+=|.++|+|.+++..|+..+-++|-+-+..
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k~pl 37 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGI 37 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCC
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeEEEEccccCC
Confidence 58999999999999999999999988877655444
No 3
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=10.47 E-value=47 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=21.3
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d 447 (495)
|-||+++.|.=+++|-+|+.+++......|
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~ 36 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDKGLSFEEII 36 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 456777777777777788998887655433
No 4
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=9.99 E-value=65 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.3
Q ss_pred eeecccccccchhhhHHHHHhhhhh
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLS 442 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~ 442 (495)
+-||+++.|.=+++|-+|+.+++..
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~ 27 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNE 27 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCC
Confidence 5578888888888888888886643
No 5
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=57 Score=18.25 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.6
Q ss_pred eeecccccccchh
Q 011019 418 AAITGEAYCSSAR 430 (495)
Q Consensus 418 iAi~G~~F~~Sak 430 (495)
+|--|++|.+|+|
T Consensus 5 c~ecgkaf~essk 17 (28)
T d1ubdc2 5 CAECGKAFVESSK 17 (28)
T ss_dssp CTTTCCEESSHHH
T ss_pred HHHHhHHHHHHHH
Confidence 3556999999998
No 6
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=7.96 E-value=62 Score=21.97 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.2
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d 447 (495)
|-+|+++.|.=++++-+++.++++.....|
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~ 32 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRAGLAYNTVD 32 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCceEEEE
Confidence 457888888888888889999888765443
No 7
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=7.46 E-value=35 Score=27.07 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=28.8
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHHHHhh
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVETVST 451 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d~i~~ 451 (495)
+-+||.+=|..+|+|.++++.|+..+-++|-+-+
T Consensus 2 i~iY~~p~Cs~srkal~~L~~~~i~~~~idy~k~ 35 (138)
T d1j9ba_ 2 ITIYHNPACGTSRNTLEMIRNSGTEPTIILYLEN 35 (138)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCCeEEEeeccC
Confidence 4588999999999999999999998887775443
No 8
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=6.43 E-value=81 Score=21.53 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=23.0
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d 447 (495)
+-+|+++-|.-++++-+++.++++.....|
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~~i~y~~~~ 32 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENRGFDFEMIN 32 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHhcCceeEEEe
Confidence 457888888888888888999888765544
No 9
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=5.79 E-value=91 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=21.2
Q ss_pred eeecccccccchhhhHHHHHhhhhhHHHHH
Q 011019 418 AAITGEAYCSSARMTYELLKRNLLSAVFVE 447 (495)
Q Consensus 418 iAi~G~~F~~Sak~a~~L~~rn~~~~~~~d 447 (495)
|-||+++.|.=++++-+++.++++.....|
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~~i~y~~~d 32 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSKGVSFQELP 32 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCeEEEe
Confidence 456777777777777788888877665543
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.94 E-value=2.5e+02 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhh
Q 011019 141 IWVLVITLILSVPICFLLLLLLKHYT 166 (495)
Q Consensus 141 ~~~i~~~~~is~~ls~~~l~llr~~a 166 (495)
|..++++.++.+.++.+...++|.++
T Consensus 75 wK~v~g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 75 WKTVVGAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66677778888888888888888764
Done!