Query 011020
Match_columns 495
No_of_seqs 194 out of 789
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 1.5E-30 5.3E-35 241.5 10.1 135 112-249 8-144 (174)
2 3swr_A DNA (cytosine-5)-methyl 99.9 3.9E-26 1.3E-30 258.9 18.0 141 100-249 132-283 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 1.3E-24 4.5E-29 251.7 13.8 141 100-249 443-595 (1330)
4 4dov_A ORC1, origin recognitio 99.8 2.7E-20 9.4E-25 172.3 17.3 141 102-249 8-162 (163)
5 4ft4_B DNA (cytosine-5)-methyl 99.8 9.3E-20 3.2E-24 200.3 10.4 132 117-249 44-182 (784)
6 3swr_A DNA (cytosine-5)-methyl 99.8 3E-19 1E-23 202.8 14.5 133 117-250 321-504 (1002)
7 3av4_A DNA (cytosine-5)-methyl 99.8 1.1E-18 3.8E-23 202.5 11.6 133 117-250 633-815 (1330)
8 2fl7_A Regulatory protein SIR3 99.3 3.3E-12 1.1E-16 124.3 7.1 126 126-252 48-195 (232)
9 1m4z_A Origin recognition comp 99.3 2.4E-12 8.2E-17 125.7 5.7 127 126-253 48-196 (238)
10 2dme_A PHD finger protein 3; P 98.4 3.1E-07 1.1E-11 81.3 5.0 74 346-459 7-83 (120)
11 2lw4_A Transcription elongatio 98.3 4.8E-07 1.6E-11 79.3 4.9 72 346-459 7-80 (113)
12 3po3_S Transcription elongatio 98.2 7.7E-07 2.6E-11 83.5 5.3 70 346-459 12-85 (178)
13 3ndq_A Transcription elongatio 98.2 9.2E-07 3.1E-11 76.9 4.2 71 346-458 11-83 (108)
14 1pqv_S STP-alpha, transcriptio 98.0 4.1E-06 1.4E-10 84.4 5.8 70 345-458 142-215 (309)
15 2ca6_A RAN GTPase-activating p 61.4 3.2 0.00011 40.5 2.0 12 40-51 330-341 (386)
16 3zzs_A Transcription attenuati 35.6 47 0.0016 26.4 4.4 48 166-216 13-60 (65)
17 3llr_A DNA (cytosine-5)-methyl 34.4 19 0.00065 32.9 2.3 43 127-171 13-58 (154)
18 2gfu_A DNA mismatch repair pro 31.0 27 0.00093 30.5 2.7 45 126-172 18-68 (134)
19 3zte_A Tryptophan operon RNA-b 28.9 55 0.0019 26.8 3.9 48 166-216 21-68 (78)
20 2a7y_A Hypothetical protein RV 25.3 42 0.0014 28.0 2.7 40 132-172 7-46 (83)
21 4fu6_A PC4 and SFRS1-interacti 23.1 41 0.0014 29.9 2.5 40 130-171 22-63 (153)
22 2l8d_A Lamin-B receptor; DNA b 21.7 95 0.0032 24.8 3.9 29 128-157 7-35 (66)
23 1khc_A DNA cytosine-5 methyltr 21.4 25 0.00086 31.6 0.7 43 127-171 8-53 (147)
24 2dig_A Lamin-B receptor; tudor 21.0 1E+02 0.0035 24.8 4.0 29 128-157 10-38 (68)
25 2eqj_A Metal-response element- 20.7 88 0.003 25.0 3.6 28 130-159 13-40 (66)
26 4hcz_A PHD finger protein 1; p 20.7 91 0.0031 24.4 3.6 28 130-159 3-30 (58)
27 2m0o_A PHD finger protein 1; t 20.0 72 0.0024 26.3 3.0 29 129-159 25-53 (79)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.96 E-value=1.5e-30 Score=241.45 Aligned_cols=135 Identities=24% Similarity=0.447 Sum_probs=104.7
Q ss_pred CCCCCcceeeeEEEEcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccccCCCCCCcCCCCC
Q 011020 112 GKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKGGGNWLSRDTR 191 (495)
Q Consensus 112 GKGkk~R~~Y~Sf~~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkdG~~~VrVqWFYRPEET~~~~~g~f~~~~~n 191 (495)
|++.+++.||++|.++|.+|++||||||.+++.+.+||||+|.+||++.+|.++|+|+|||||+||.+...+.+ ++|
T Consensus 8 ~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~---~~~ 84 (174)
T 1w4s_A 8 GLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKF---LEK 84 (174)
T ss_dssp ------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEE---ETT
T ss_pred cccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcC---CCC
Confidence 34445788999999999999999999999988678999999999999999999999999999999998766655 699
Q ss_pred eeEeeCCcccccccceeeecEEEecCccccC-CC-CCCCCceEEEeeeecCCcEEeecCC
Q 011020 192 ELFYSFHRDEVPAESVMHKCVVHFVPIHKQL-PN-RKQHPGFIVQKVYDTVERKLWKLTD 249 (495)
Q Consensus 192 ELFlSdh~D~~PlesI~GKC~V~~v~ey~ql-p~-~~~pd~FfCr~vYD~~~kKL~~L~d 249 (495)
|||+|+|++++|+++|+|||.|++.++|.+. |. ....+.|||+..||..+++|..+..
T Consensus 85 EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~ 144 (174)
T 1w4s_A 85 EVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKL 144 (174)
T ss_dssp EEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSS
T ss_pred eeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCcc
Confidence 9999999999999999999999999999775 22 2234789999999999999987755
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.94 E-value=3.9e-26 Score=258.86 Aligned_cols=141 Identities=20% Similarity=0.284 Sum_probs=122.4
Q ss_pred CccccccceeecCCCCCcceeeeEEEEcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeeccccccc
Q 011020 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (495)
Q Consensus 100 ~a~pIG~pVK~~GKGkk~R~~Y~Sf~~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkdG~~~VrVqWFYRPEET~~ 179 (495)
...|+|.|+ |++.++.+|+++.++|.+|+|||||||.++++..+||||+|++||++.+|.+||+|+|||||+||.+
T Consensus 132 ~~~W~G~p~----k~~~~~~~Y~s~~v~g~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~l 207 (1002)
T 3swr_A 132 RISWVGEAV----KTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVL 207 (1002)
T ss_dssp CEEEESCCC----CCBTTEEECSEEEETTEEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTT
T ss_pred cccccCccc----ccccCceeeeEEEECCEEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhccc
Confidence 446999999 5556789999999999999999999999988778889999999999988999999999999999997
Q ss_pred CCCCCCcCCCCCeeEeeCCcccccccceeeecEEEecCccc--------c--CC-CCCCCCceEEEeeeecCCcEEeecC
Q 011020 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHK--------Q--LP-NRKQHPGFIVQKVYDTVERKLWKLT 248 (495)
Q Consensus 180 ~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~--------q--lp-~~~~pd~FfCr~vYD~~~kKL~~L~ 248 (495)
+.. ++++|||+|++|+++++++|+|||+|++...+. . .+ ....+++|||+..||+.+++|..|+
T Consensus 208 g~~-----~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp 282 (1002)
T 3swr_A 208 GAT-----SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPP 282 (1002)
T ss_dssp GGG-----SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCC
T ss_pred ccC-----CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCC
Confidence 432 589999999999999999999999999875511 1 11 1123689999999999999999997
Q ss_pred C
Q 011020 249 D 249 (495)
Q Consensus 249 d 249 (495)
.
T Consensus 283 ~ 283 (1002)
T 3swr_A 283 K 283 (1002)
T ss_dssp C
T ss_pred h
Confidence 6
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.91 E-value=1.3e-24 Score=251.73 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=118.0
Q ss_pred CccccccceeecCCCCCcceeeeEEEEcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeeccccccc
Q 011020 100 DAKPVGELVRFSGKGRGRRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADR 179 (495)
Q Consensus 100 ~a~pIG~pVK~~GKGkk~R~~Y~Sf~~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkdG~~~VrVqWFYRPEET~~ 179 (495)
+-.|+|.|++.. .+++||+++.++|.+|++||||||.+++++.++|||+|++||++.+|.+||+|+|||||+||.+
T Consensus 443 ~i~W~G~p~k~~----~~~~~Y~~~~v~g~~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvl 518 (1330)
T 3av4_A 443 RISWLGQPMKIE----ENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVL 518 (1330)
T ss_dssp CEEEESSCSCCC------CEEECSEEEESSEEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTT
T ss_pred CceEccCceecc----CCceeeeEEEECCEEEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHccc
Confidence 345889888443 4689999999999999999999999887667899999999999999999999999999999986
Q ss_pred CCCCCCcCCCCCeeEeeCCcccccccceeeecEEEecCcccc---C----CCC-----CCCCceEEEeeeecCCcEEeec
Q 011020 180 KGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQ---L----PNR-----KQHPGFIVQKVYDTVERKLWKL 247 (495)
Q Consensus 180 ~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~q---l----p~~-----~~pd~FfCr~vYD~~~kKL~~L 247 (495)
.. .++++|||+|+|+|++|+++|+|||+|++...+.. . +.. .....|||++.||+..++|++|
T Consensus 519 g~-----~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~l 593 (1330)
T 3av4_A 519 GA-----TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESP 593 (1330)
T ss_dssp GG-----GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECC
T ss_pred cc-----ccCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCc
Confidence 32 25999999999999999999999999999866322 1 111 2357899999999999999999
Q ss_pred CC
Q 011020 248 TD 249 (495)
Q Consensus 248 ~d 249 (495)
+.
T Consensus 594 p~ 595 (1330)
T 3av4_A 594 PK 595 (1330)
T ss_dssp CC
T ss_pred Cc
Confidence 77
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.85 E-value=2.7e-20 Score=172.31 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=111.1
Q ss_pred cccccceeecCCCCCcceeeeEEEE--cC---EEEeeCCeEEEcCCCCCCCCeEEEEeEEeeC---CCCceEEEEEEeec
Q 011020 102 KPVGELVRFSGKGRGRRSHYEAFEF--DG---NKYELEDPVLLTPEDTNQKPYVAIIKEITQS---KDGSMMVTGQWFYR 173 (495)
Q Consensus 102 ~pIG~pVK~~GKGkk~R~~Y~Sf~~--dG---~~YkVGD~VyV~~ed~~e~PyIArI~eIwed---kdG~~~VrVqWFYR 173 (495)
.|+|.|+ ... +....+|++|.+ .| .++++||||+|.+++ ...||||+|++|+++ ....+.++||||||
T Consensus 8 sW~g~~l-~dr--kl~~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D-~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R 83 (163)
T 4dov_A 8 SWVGRPL-PNR--KQFQQMYREICMKINDGSEIHIKVGQFVLIQGED-NKKPYVAKLIELFQNGAEVPPKKCARVQWFVR 83 (163)
T ss_dssp EEESCCC-CCC--CTTEEEESEEEEECTTSCEEEEETTCEEEECCSS-SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEE
T ss_pred EEeccCc-CCC--cccceeeeEEEEecCCCCCeEEeeCCEEEEeCCc-ccCChhHHHHHHHhccccCCCceEEEEEeeec
Confidence 5889988 322 233568999988 56 899999999999988 578899999999985 23468999999999
Q ss_pred ccccccCCCCCCc--CCCCCeeEeeCCcc---cccccceeeecEEEecCccccCCCC-CCCCceEEEeeeecCCcEEeec
Q 011020 174 PEEADRKGGGNWL--SRDTRELFYSFHRD---EVPAESVMHKCVVHFVPIHKQLPNR-KQHPGFIVQKVYDTVERKLWKL 247 (495)
Q Consensus 174 PEET~~~~~g~f~--~~~~nELFlSdh~D---~~PlesI~GKC~V~~v~ey~qlp~~-~~pd~FfCr~vYD~~~kKL~~L 247 (495)
|+|++... ..+. ..+.+|||+++|.+ .+.+++|+|+|.|++...+..+|.. ....+||.+..+|.. +|.-|
T Consensus 84 ~~EiP~~k-~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~pl 160 (163)
T 4dov_A 84 FLEIPVSK-RHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAPL 160 (163)
T ss_dssp GGGSCTTT-GGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEEC
T ss_pred hhhccccc-hhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--cceeC
Confidence 99998532 1111 14689999999984 7899999999999999999888743 567899999999954 45555
Q ss_pred CC
Q 011020 248 TD 249 (495)
Q Consensus 248 ~d 249 (495)
++
T Consensus 161 ~~ 162 (163)
T 4dov_A 161 PP 162 (163)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 5
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.79 E-value=9.3e-20 Score=200.34 Aligned_cols=132 Identities=19% Similarity=0.316 Sum_probs=108.6
Q ss_pred cceeeeEEEEcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEeecccccccCC----CCCCcCCCCCe
Q 011020 117 RRSHYEAFEFDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFYRPEEADRKG----GGNWLSRDTRE 192 (495)
Q Consensus 117 ~R~~Y~Sf~~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkdG~~~VrVqWFYRPEET~~~~----~g~f~~~~~nE 192 (495)
.++||.++.++|+.|++||+|||+++. +.++|||+|.+||++.+|..+|+|+|||||+||.... ...-..++.||
T Consensus 44 ~~~~~~~~~~~~~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~ 122 (784)
T 4ft4_B 44 ARCHYRSAKVDNVVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHDPRR 122 (784)
T ss_dssp EEEECSEEEETTEEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTB
T ss_pred cceeeeeeeECCEEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccccce
Confidence 478999999999999999999999865 6789999999999999999999999999999998532 11123468999
Q ss_pred eEeeCCcccccccceeeecEEEecCccccCCC---CCCCCceEEEeeeecCCcEEeecCC
Q 011020 193 LFYSFHRDEVPAESVMHKCVVHFVPIHKQLPN---RKQHPGFIVQKVYDTVERKLWKLTD 249 (495)
Q Consensus 193 LFlSdh~D~~PlesI~GKC~V~~v~ey~qlp~---~~~pd~FfCr~vYD~~~kKL~~L~d 249 (495)
||+|++++++|+++|.|||+|+++....+.+. ......|||.+.|.....++..++.
T Consensus 123 ~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 182 (784)
T 4ft4_B 123 VFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISS 182 (784)
T ss_dssp EEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC--
T ss_pred EEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccCCCc
Confidence 99999999999999999999999877655431 1123569999999887777766643
No 6
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.79 E-value=3e-19 Score=202.77 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=110.3
Q ss_pred cceeeeEEEEcCEEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 011020 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (495)
Q Consensus 117 ~R~~Y~Sf~~dG~~YkVGD~VyV~~ed-----------------------------------------~~e~PyIArI~e 155 (495)
++.+|.+|.++|.+|++||+|||.++. ...+++||+|.+
T Consensus 321 ~~~~~~~~~~~g~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~IgrI~~ 400 (1002)
T 3swr_A 321 SRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 400 (1002)
T ss_dssp SCEEESEEEETTEEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEEEEEE
T ss_pred CcEEEEEEEECCEEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceeeEEeE
Confidence 467999999999999999999999832 134778999999
Q ss_pred EeeCCCCc-------eEEEEEEeecccccccCCCCCCcCCCCCeeEeeCCcccccccceeeecEEEecCccccCC---CC
Q 011020 156 ITQSKDGS-------MMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP---NR 225 (495)
Q Consensus 156 IwedkdG~-------~~VrVqWFYRPEET~~~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~qlp---~~ 225 (495)
||....+. ++|+|+|||||+||.+.... ...++.||||+|+|.+++|+++|+|||.|++..++.... ..
T Consensus 401 i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~-~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~ 479 (1002)
T 3swr_A 401 IFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPA-SYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSM 479 (1002)
T ss_dssp EEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGG-GSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHH
T ss_pred EEecCCccccCCCccEEEEEEEEECcccccccccc-cccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhcc
Confidence 99776544 89999999999999864322 335689999999999999999999999999998886542 11
Q ss_pred CCCCceEEEeeeecCCcEEeecCCc
Q 011020 226 KQHPGFIVQKVYDTVERKLWKLTDK 250 (495)
Q Consensus 226 ~~pd~FfCr~vYD~~~kKL~~L~dk 250 (495)
..++.|||..+||+.++.|..++..
T Consensus 480 ~~p~~fyf~~~Yd~~~~~f~~~p~~ 504 (1002)
T 3swr_A 480 GGPNRFYFLEAYNAKSKSFEDPPNH 504 (1002)
T ss_dssp TSSSEEEEEEEEETTTTEEECCCST
T ss_pred CCCCeEEEEEEEeCCCCeeecCccc
Confidence 3468899999999999999887643
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.76 E-value=1.1e-18 Score=202.54 Aligned_cols=133 Identities=23% Similarity=0.319 Sum_probs=109.7
Q ss_pred cceeeeEEEEcCEEEeeCCeEEEcCCC-----------------------------------------CCCCCeEEEEeE
Q 011020 117 RRSHYEAFEFDGNKYELEDPVLLTPED-----------------------------------------TNQKPYVAIIKE 155 (495)
Q Consensus 117 ~R~~Y~Sf~~dG~~YkVGD~VyV~~ed-----------------------------------------~~e~PyIArI~e 155 (495)
++.+|.+|.++|.+|++||||||.++. ...+++||+|.+
T Consensus 633 ~~~~Y~~~~~~g~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~IgqI~e 712 (1330)
T 3av4_A 633 GRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKE 712 (1330)
T ss_dssp SSEEEEEEEETTEEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEEEEEE
T ss_pred CceeeeEEEECCEEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEEEEEE
Confidence 478999999999999999999998761 135568999999
Q ss_pred EeeCCC------CceEEEEEEeecccccccCCCCCCcCCCCCeeEeeCCcccccccceeeecEEEecCccccC--C-CCC
Q 011020 156 ITQSKD------GSMMVTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQL--P-NRK 226 (495)
Q Consensus 156 Iwedkd------G~~~VrVqWFYRPEET~~~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~ql--p-~~~ 226 (495)
||.+.+ +..+|+|+|||||+||.+...+. ...+.||||+|++.+++|+++|.|||.|+++.++... + ...
T Consensus 713 I~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~-~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~ 791 (1330)
T 3av4_A 713 IHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGS-YHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQG 791 (1330)
T ss_dssp CCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTT-TTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHT
T ss_pred EEecCCccccCCCceEEEEEEeeChhhcccccccc-cccCcceEEeeccceecCHHHcCceEEEEecccccccccccccC
Confidence 998754 57899999999999998743222 2458999999999999999999999999999887663 2 222
Q ss_pred CCCceEEEeeeecCCcEEeecCCc
Q 011020 227 QHPGFIVQKVYDTVERKLWKLTDK 250 (495)
Q Consensus 227 ~pd~FfCr~vYD~~~kKL~~L~dk 250 (495)
.++.|||+..||..++.|..++..
T Consensus 792 g~d~Fy~~~~Yd~~~k~~~~~P~~ 815 (1330)
T 3av4_A 792 GPDRFYFLEAYNSKTKNFEDPPNH 815 (1330)
T ss_dssp STTEEEESCEEETTTTEEECCCGG
T ss_pred CCCeEEEEEEecccCCeeccCchH
Confidence 378999999999999988755443
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.28 E-value=3.3e-12 Score=124.28 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=93.9
Q ss_pred EcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEeeccccccc-------CCC-----CCCcC-----
Q 011020 126 FDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS----- 187 (495)
Q Consensus 126 ~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedk-dG~~~VrVqWFYRPEET~~-------~~~-----g~f~~----- 187 (495)
.+|..|++||+|.|..+. .+.+.|+.|..|.-.. +.-+.+.|+||+|..|+.. .+. +...+
T Consensus 48 ~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~ 126 (232)
T 2fl7_A 48 SDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKF 126 (232)
T ss_dssp TTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhh
Confidence 389999999999998765 4566688888886554 5578999999999999975 211 11122
Q ss_pred ---CCCCeeEeeCCcccccccceeeecEEEecCccccCC-CCCCCCceEEEeeeecCCcEEeecCCchh
Q 011020 188 ---RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLTDKDY 252 (495)
Q Consensus 188 ---~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~qlp-~~~~pd~FfCr~vYD~~~kKL~~L~dkDy 252 (495)
...||||+|.+.+.+-+.+|+++|+|+...+|..+. ......+||||.+||+...+|..+.-.++
T Consensus 127 ~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~ 195 (232)
T 2fl7_A 127 FNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDIFQI 195 (232)
T ss_dssp HHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCHHHH
T ss_pred hcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccHHHH
Confidence 589999999999999999999999999999998773 23346999999999998776766544444
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.27 E-value=2.4e-12 Score=125.67 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=100.1
Q ss_pred EcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-CCceEEEEEEeeccccccc-------CCC-----CCCcC-----
Q 011020 126 FDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-DGSMMVTGQWFYRPEEADR-------KGG-----GNWLS----- 187 (495)
Q Consensus 126 ~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedk-dG~~~VrVqWFYRPEET~~-------~~~-----g~f~~----- 187 (495)
.||..|++||+|.|..+. .+.+.|+.|..|.-+. ++-+.+.|.||+|..|+.. .+. +...+
T Consensus 48 ~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~ 126 (238)
T 1m4z_A 48 SDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLF 126 (238)
T ss_dssp TTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHH
T ss_pred cCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhh
Confidence 389999999999998765 4566788888886554 5578999999999999975 211 11122
Q ss_pred ---CCCCeeEeeCCcccccccceeeecEEEecCccccCC-CCCCCCceEEEeeeecCCcEEeecCCchhh
Q 011020 188 ---RDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLP-NRKQHPGFIVQKVYDTVERKLWKLTDKDYE 253 (495)
Q Consensus 188 ---~~~nELFlSdh~D~~PlesI~GKC~V~~v~ey~qlp-~~~~pd~FfCr~vYD~~~kKL~~L~dkDye 253 (495)
...||||+|.+.+.+-+.+|+++|+|+...+|..+. ......+||||++||+...+|..+.-.++.
T Consensus 127 ~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~~~~ 196 (238)
T 1m4z_A 127 SETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIEDVK 196 (238)
T ss_dssp HHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHHHHH
T ss_pred hcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHHHHH
Confidence 589999999999999999999999999999998763 224569999999999987777766444443
No 10
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.1e-07 Score=81.26 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=59.4
Q ss_pred ccCCchhhhHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCC-chhHHHHHHH
Q 011020 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIW-PDTAIAAVTA 424 (495)
Q Consensus 346 ~tg~~~rd~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-p~~~v~~v~a 424 (495)
.++|..||++.+.|.+.+......... .. ..+++.++.+
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~~~~~----------------------------------------~~~~~~~~~lA~~ 46 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLTDSNL----------------------------------------KVPEEKAAKVATK 46 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTC----------------------------------------CCCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhcccccc----------------------------------------ccchhHHHHHHHH
Confidence 477899999999999999654432210 01 2467889999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHhhc--ccccccc
Q 011020 425 LEKASHDTLSLDFQKYNQKLRQLLFNLK--RAWVGPG 459 (495)
Q Consensus 425 le~~~~~~~~~d~~kyn~k~~~l~~n~k--~~~~~~~ 459 (495)
+|.|+|+.++....+|++|+|+|+|||| +|+.|..
T Consensus 47 IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~ 83 (120)
T 2dme_A 47 IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 83 (120)
T ss_dssp HHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999988999999999999999 7877654
No 11
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.30 E-value=4.8e-07 Score=79.31 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=55.4
Q ss_pred ccCCchhhhHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCCchhHHHHHHHH
Q 011020 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (495)
Q Consensus 346 ~tg~~~rd~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~~v~~v~al 425 (495)
+|||.-|||+.+-|.+++.. .++.. .. ..++..+..++
T Consensus 7 ~t~D~vRdk~~e~L~~aL~~---~~~~~-~~--------------------------------------~~~~~~~A~~I 44 (113)
T 2lw4_A 7 VTCDAVRNKCREMLTAALQT---DHDHV-AI--------------------------------------GADCERLSAQI 44 (113)
T ss_dssp CCCSTTHHHHHHHHHHHHHS---STHHH-HH--------------------------------------TCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHc---CCCcc-cc--------------------------------------cchHHHHHHHH
Confidence 59999999999999988852 11000 00 01455678899
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhc--ccccccc
Q 011020 426 EKASHDTLSLDFQKYNQKLRQLLFNLK--RAWVGPG 459 (495)
Q Consensus 426 e~~~~~~~~~d~~kyn~k~~~l~~n~k--~~~~~~~ 459 (495)
|.+.|+.++..-.+|.+|+|+|.|||| +|+-|..
T Consensus 45 E~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~Lr~ 80 (113)
T 2lw4_A 45 EECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRR 80 (113)
T ss_dssp HHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 999999999999999999999999999 5665543
No 12
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=98.24 E-value=7.7e-07 Score=83.48 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=54.6
Q ss_pred ccCCchhhhHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCCchhHHHHHHHH
Q 011020 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (495)
Q Consensus 346 ~tg~~~rd~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~~v~~v~al 425 (495)
+|||.-|||+.+-|.+++...... . |..++.++.+|
T Consensus 12 ~~~d~vRdk~~~lL~~aL~~~~~~-------------------------------------------~-~~~~~~~A~~I 47 (178)
T 3po3_S 12 IYHHKLRDQVLKALYDVLAKESEH-------------------------------------------P-PQSILHTAKAI 47 (178)
T ss_dssp ---CHHHHHHHHHHHHHTTSSSSC-------------------------------------------S-TTHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhcCCCC-------------------------------------------c-hhhHHHHHHHH
Confidence 599999999999999888642110 0 45788999999
Q ss_pred HHHhhhhhhh--hHHHHHHHHHHHHHhhc--ccccccc
Q 011020 426 EKASHDTLSL--DFQKYNQKLRQLLFNLK--RAWVGPG 459 (495)
Q Consensus 426 e~~~~~~~~~--d~~kyn~k~~~l~~n~k--~~~~~~~ 459 (495)
|.|+|+.++. +..+|++|+|+|+|||| +|+.|..
T Consensus 48 E~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr~ 85 (178)
T 3po3_S 48 ESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKH 85 (178)
T ss_dssp HHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHHH
T ss_pred HHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHHH
Confidence 9999999986 55689999999999999 7766643
No 13
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=98.19 E-value=9.2e-07 Score=76.92 Aligned_cols=71 Identities=21% Similarity=0.082 Sum_probs=55.7
Q ss_pred ccCCchhhhHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCCchhHHHHHHHH
Q 011020 346 LTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTAL 425 (495)
Q Consensus 346 ~tg~~~rd~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~~v~~v~al 425 (495)
+|||.-|||+.+-|-+++..-. + +.. . -..+..+...+
T Consensus 11 ~t~d~vR~k~~~lL~~aL~~~~---d--~~~-------------------------------~------~~~~~~lA~~I 48 (108)
T 3ndq_A 11 STSDSVRLKCREMLAAALRTGD---D--YIA-------------------------------I------GADEEELGSQI 48 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGG---H--HHH-------------------------------H------TCCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCC---C--CCc-------------------------------c------cccHHHHHHHH
Confidence 4999999999999998886521 0 000 0 01456788999
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhc--cccccc
Q 011020 426 EKASHDTLSLDFQKYNQKLRQLLFNLK--RAWVGP 458 (495)
Q Consensus 426 e~~~~~~~~~d~~kyn~k~~~l~~n~k--~~~~~~ 458 (495)
|.|.|+.++..-.+|.+|+|+|+|||| +|+-|.
T Consensus 49 E~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr 83 (108)
T 3ndq_A 49 EEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLR 83 (108)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999888899999999999999 776553
No 14
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=98.03 E-value=4.1e-06 Score=84.37 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=57.5
Q ss_pred cccCCchhhhHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCCCCcccccCccCCccccccCCCCCCCCchhHHHHHHH
Q 011020 345 ALTGETHRDKWLERLLQGLQYICNSADSIHADQNGKGGCKGVDHESEDKSVGTENGSREKGQKNGKSFIWPDTAIAAVTA 424 (495)
Q Consensus 345 ~~tg~~~rd~~l~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~~v~~v~a 424 (495)
..|||..||+|++.|.++++.... + . |++++.+..+
T Consensus 142 ~~~~d~~R~k~r~~L~~aL~~~~~-----~--------------------------------------~-~~~~~~~A~~ 177 (309)
T 1pqv_S 142 AIYHHKLRDQVLKALYDVLAKESE-----H--------------------------------------P-PQSILHTAKA 177 (309)
T ss_pred CcCChHHHHHHHHHHHHHHhcCCC-----c--------------------------------------c-chhHHHHHHH
Confidence 458999999999999999963100 0 0 3478899999
Q ss_pred HHHHhhhhhhhhHHH--HHHHHHHHHHhhc--cccccc
Q 011020 425 LEKASHDTLSLDFQK--YNQKLRQLLFNLK--RAWVGP 458 (495)
Q Consensus 425 le~~~~~~~~~d~~k--yn~k~~~l~~n~k--~~~~~~ 458 (495)
||.|+|+.++.+..+ |++|+|+|+|||| +|+.|.
T Consensus 178 IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr 215 (309)
T 1pqv_S 178 IESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLK 215 (309)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHH
Confidence 999999999888888 9999999999999 777554
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=61.35 E-value=3.2 Score=40.54 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=5.7
Q ss_pred hhhhhccccccc
Q 011020 40 SKRKRIKLQEEE 51 (495)
Q Consensus 40 ~~~~~~~l~~~~ 51 (495)
...+.++|.+.+
T Consensus 330 ~~~~~~~l~~~d 341 (386)
T 2ca6_A 330 STRGRGELDELD 341 (386)
T ss_dssp HHHTCCEECCCC
T ss_pred hhcCcchhhhcc
Confidence 444455554433
No 16
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=35.62 E-value=47 Score=26.38 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=35.1
Q ss_pred EEEEEeecccccccCCCCCCcCCCCCeeEeeCCcccccccceeeecEEEec
Q 011020 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (495)
Q Consensus 166 VrVqWFYRPEET~~~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v 216 (495)
|+|.=+-|..||.-...-+ .+..||.+....+-..+-.|+|++.|+..
T Consensus 13 V~VigltRg~dtkfhhtEk---LdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEK---LDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEE---ECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhc---cCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 4455566777774222222 38899999999999999999999999864
No 17
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=34.40 E-value=19 Score=32.88 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=32.3
Q ss_pred cCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCC---CceEEEEEEe
Q 011020 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKD---GSMMVTGQWF 171 (495)
Q Consensus 127 dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkd---G~~~VrVqWF 171 (495)
+|..|.+||.|..+-. +-++|-|+|........ ..-.+.|+||
T Consensus 13 dg~~f~~GDLVWaKvk--G~PwWPa~V~~~~~~~k~~~~~~~~~V~FF 58 (154)
T 3llr_A 13 DGRGFGIGELVWGKLR--GFSWWPGRIVSWWMTGRSRAAEGTRWVMWF 58 (154)
T ss_dssp SSCCCCTTCEEEECCT--TSCCEEEEEECGGGTTSCCCCTTEEEEEET
T ss_pred cCCCCccCCEEEEecC--CCCCCCEEEecccccccccCCCCEEEEEEe
Confidence 6778999999999975 48999999998753211 1236677777
No 18
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.00 E-value=27 Score=30.50 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=32.3
Q ss_pred EcCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC-----CC-ceEEEEEEee
Q 011020 126 FDGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSK-----DG-SMMVTGQWFY 172 (495)
Q Consensus 126 ~dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedk-----dG-~~~VrVqWFY 172 (495)
.++..|.+||.|...-. +-++|-|+|...-... .+ ...+.|+||-
T Consensus 18 ~~~~~~~~GdlVwaK~~--g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg 68 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKME--GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFD 68 (134)
T ss_dssp CSSCCCCTTSEEEECCT--TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECS
T ss_pred CcCCCCCCCCEEEEeec--CCCCCCeeecchhhhhhhhhccCCCceEEEEECC
Confidence 45778999999999876 4889999998864321 11 2467777774
No 19
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=28.93 E-value=55 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=35.0
Q ss_pred EEEEEeecccccccCCCCCCcCCCCCeeEeeCCcccccccceeeecEEEec
Q 011020 166 VTGQWFYRPEEADRKGGGNWLSRDTRELFYSFHRDEVPAESVMHKCVVHFV 216 (495)
Q Consensus 166 VrVqWFYRPEET~~~~~g~f~~~~~nELFlSdh~D~~PlesI~GKC~V~~v 216 (495)
|+|.=+-|..||.-...-+ .+..||.+....+-..+-.|+|++.|+..
T Consensus 21 V~VIGltRG~dtkfhHtEk---LdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEK---LDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEEEE---ECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCcccceehc---cCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 4444556667763211112 38899999999999999999999999865
No 20
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=25.35 E-value=42 Score=27.97 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=33.4
Q ss_pred eeCCeEEEcCCCCCCCCeEEEEeEEeeCCCCceEEEEEEee
Q 011020 132 ELEDPVLLTPEDTNQKPYVAIIKEITQSKDGSMMVTGQWFY 172 (495)
Q Consensus 132 kVGD~VyV~~ed~~e~PyIArI~eIwedkdG~~~VrVqWFY 172 (495)
.+||.+.|.....+.+...|.|+++.-. +|..=..|+|+-
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~d 46 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWLV 46 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEETT
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEecC
Confidence 6899999998877788899999999754 677778899963
No 21
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=23.10 E-value=41 Score=29.93 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=26.8
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeCC--CCceEEEEEEe
Q 011020 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQSK--DGSMMVTGQWF 171 (495)
Q Consensus 130 ~YkVGD~VyV~~ed~~e~PyIArI~eIwedk--dG~~~VrVqWF 171 (495)
.|++||.|...-. +-++|-|+|...-... .....+.|+||
T Consensus 22 ~f~~GdlVwaK~~--g~p~WPa~V~~~~~~~~~~~~~~~~V~Ff 63 (153)
T 4fu6_A 22 DFKPGDLIFAKMK--GYPHWPARVDEVPDGAVKPPTNKLPIFFF 63 (153)
T ss_dssp GCCTTCEEEECCT--TSCCEEEEECCCC---CCCCTTCEEEEET
T ss_pred CCCCCCEEEEeCC--CCCCCCEEEeEchhhccCCCCCEEEEEec
Confidence 5899999999975 4889999998754321 11234556665
No 22
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=21.69 E-value=95 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=24.6
Q ss_pred CEEEeeCCeEEEcCCCCCCCCeEEEEeEEe
Q 011020 128 GNKYELEDPVLLTPEDTNQKPYVAIIKEIT 157 (495)
Q Consensus 128 G~~YkVGD~VyV~~ed~~e~PyIArI~eIw 157 (495)
...|.+||.|+-+=.. +..+|-|+|.+|.
T Consensus 7 ~~~~~vgd~VmaRW~G-d~~yYparI~Si~ 35 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPG-SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSSCSSCEEEEECTT-SSCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEcCC-CccceEEEEEEec
Confidence 4578999999998733 6889999999998
No 23
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=21.38 E-value=25 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=30.9
Q ss_pred cCEEEeeCCeEEEcCCCCCCCCeEEEEeEEeeCCC---CceEEEEEEe
Q 011020 127 DGNKYELEDPVLLTPEDTNQKPYVAIIKEITQSKD---GSMMVTGQWF 171 (495)
Q Consensus 127 dG~~YkVGD~VyV~~ed~~e~PyIArI~eIwedkd---G~~~VrVqWF 171 (495)
+|..|.+||.|..+-. +-++|-|+|........ ....+.|+||
T Consensus 8 ~~~~~~~GDlVWaKvk--GyPwWPa~V~~~~~~~~~~~~~~~~~V~FF 53 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIK--GFSWWPAMVVSWKATSKRQAMPGMRWVQWF 53 (147)
T ss_dssp SSSSCCTTCEEEEEET--TTEEEEEEEECGGGTTSCCCCTTEEEEEET
T ss_pred CCccCcCCCEEEEecC--CcCCCCEEeccchhhhcccCCCCeEEEEEe
Confidence 5678999999999875 48899999987654321 1235677777
No 24
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.02 E-value=1e+02 Score=24.76 Aligned_cols=29 Identities=14% Similarity=-0.064 Sum_probs=24.8
Q ss_pred CEEEeeCCeEEEcCCCCCCCCeEEEEeEEe
Q 011020 128 GNKYELEDPVLLTPEDTNQKPYVAIIKEIT 157 (495)
Q Consensus 128 G~~YkVGD~VyV~~ed~~e~PyIArI~eIw 157 (495)
...|.+||.|+-+=. ....+|-|+|.+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit 38 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD 38 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec
Confidence 357899999999865 36889999999998
No 25
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.71 E-value=88 Score=25.00 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=24.0
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 011020 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (495)
Q Consensus 130 ~YkVGD~VyV~~ed~~e~PyIArI~eIwed 159 (495)
.|++||.|+..=.+ -..|.|.|.+|.+.
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999998654 67899999999864
No 26
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.70 E-value=91 Score=24.36 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.0
Q ss_pred EEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 011020 130 KYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (495)
Q Consensus 130 ~YkVGD~VyV~~ed~~e~PyIArI~eIwed 159 (495)
.+..|+.|++.-.+ -.+|.|.|++|...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 46889999999876 78999999999754
No 27
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.04 E-value=72 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.1
Q ss_pred EEEeeCCeEEEcCCCCCCCCeEEEEeEEeeC
Q 011020 129 NKYELEDPVLLTPEDTNQKPYVAIIKEITQS 159 (495)
Q Consensus 129 ~~YkVGD~VyV~~ed~~e~PyIArI~eIwed 159 (495)
..|.+|+.|++.-.+ -.+|.|.|.+|...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 368999999999876 68999999999854
Done!