Query 011021
Match_columns 495
No_of_seqs 350 out of 2953
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 3.5E-19 7.6E-24 160.4 -3.4 258 19-341 97-374 (419)
2 PLN00113 leucine-rich repeat r 99.7 3.8E-16 8.1E-21 175.2 11.9 257 142-408 93-364 (968)
3 PLN00113 leucine-rich repeat r 99.6 4.7E-16 1E-20 174.4 9.5 307 142-467 236-581 (968)
4 KOG4341 F-box protein containi 99.6 4.5E-17 9.8E-22 153.4 -2.3 324 17-407 68-433 (483)
5 PLN03210 Resistant to P. syrin 99.4 7.7E-13 1.7E-17 149.5 13.4 258 167-443 609-906 (1153)
6 PLN03210 Resistant to P. syrin 99.4 7.8E-13 1.7E-17 149.4 11.7 242 159-409 624-902 (1153)
7 KOG4194 Membrane glycoprotein 99.3 2.9E-13 6.3E-18 132.8 -0.6 284 142-441 102-427 (873)
8 KOG4194 Membrane glycoprotein 99.3 5.6E-13 1.2E-17 130.8 -0.7 295 159-471 162-481 (873)
9 KOG0444 Cytoskeletal regulator 99.1 1.9E-12 4E-17 128.1 -8.0 268 157-444 91-376 (1255)
10 KOG0444 Cytoskeletal regulator 99.0 1.1E-12 2.3E-17 129.7 -10.8 292 157-467 43-372 (1255)
11 PRK15387 E3 ubiquitin-protein 99.0 2.6E-09 5.6E-14 113.3 12.9 263 142-448 201-463 (788)
12 KOG4341 F-box protein containi 99.0 2.2E-11 4.9E-16 115.4 -3.6 190 169-360 138-355 (483)
13 cd00116 LRR_RI Leucine-rich re 98.8 1.8E-09 3.8E-14 105.6 1.4 67 160-227 42-119 (319)
14 cd00116 LRR_RI Leucine-rich re 98.7 6.8E-09 1.5E-13 101.4 3.9 61 168-228 22-93 (319)
15 PF12937 F-box-like: F-box-lik 98.7 8.4E-09 1.8E-13 69.3 2.9 35 20-54 1-35 (47)
16 PRK15387 E3 ubiquitin-protein 98.7 5.3E-08 1.1E-12 103.5 9.7 259 169-471 201-459 (788)
17 KOG2120 SCF ubiquitin ligase, 98.7 1.3E-09 2.8E-14 99.3 -2.5 150 193-343 187-351 (419)
18 KOG3207 Beta-tubulin folding c 98.6 3.2E-09 6.8E-14 101.6 -1.4 176 166-341 118-312 (505)
19 KOG0618 Serine/threonine phosp 98.5 7.8E-08 1.7E-12 100.2 3.3 23 159-181 104-126 (1081)
20 PRK15370 E3 ubiquitin-protein 98.4 1.6E-07 3.4E-12 100.4 4.8 177 142-340 178-356 (754)
21 PRK15370 E3 ubiquitin-protein 98.4 3.2E-07 7E-12 98.0 6.5 193 170-379 179-375 (754)
22 KOG0618 Serine/threonine phosp 98.3 7.9E-08 1.7E-12 100.2 -0.8 260 157-441 56-321 (1081)
23 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.3E-12 90.3 1.1 152 167-318 170-335 (505)
24 KOG0472 Leucine-rich repeat pr 98.3 1.5E-09 3.2E-14 102.7 -12.9 44 394-444 499-542 (565)
25 PF00646 F-box: F-box domain; 98.3 2.1E-07 4.5E-12 62.8 0.7 37 20-56 3-39 (48)
26 KOG0472 Leucine-rich repeat pr 98.2 2.2E-09 4.9E-14 101.5 -14.0 154 160-319 151-307 (565)
27 smart00256 FBOX A Receptor for 98.1 1.5E-06 3.3E-11 56.3 2.3 34 23-56 1-34 (41)
28 PF14580 LRR_9: Leucine-rich r 98.1 6E-07 1.3E-11 78.3 0.1 128 167-319 17-150 (175)
29 KOG1909 Ran GTPase-activating 98.0 4.8E-07 1E-11 84.6 -2.0 41 187-227 88-131 (382)
30 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-06 3.3E-11 92.0 1.2 149 169-319 122-285 (699)
31 KOG1909 Ran GTPase-activating 98.0 1.7E-06 3.8E-11 80.9 0.9 90 110-204 29-133 (382)
32 KOG4237 Extracellular matrix p 97.9 6.6E-07 1.4E-11 85.0 -4.2 272 169-455 67-373 (498)
33 PF14580 LRR_9: Leucine-rich r 97.8 5.2E-06 1.1E-10 72.4 1.0 82 167-249 40-124 (175)
34 KOG0617 Ras suppressor protein 97.8 3.2E-07 6.9E-12 77.2 -6.6 60 165-226 29-89 (264)
35 KOG1947 Leucine rich repeat pr 97.8 2.8E-06 6E-11 88.0 -1.5 167 142-320 188-373 (482)
36 KOG0617 Ras suppressor protein 97.7 3.1E-07 6.7E-12 77.3 -7.9 67 159-227 46-113 (264)
37 KOG4658 Apoptotic ATPase [Sign 97.7 0.00013 2.9E-09 79.6 9.7 159 130-294 488-652 (889)
38 KOG1947 Leucine rich repeat pr 97.6 9.1E-06 2E-10 84.1 -1.7 125 168-292 187-329 (482)
39 KOG2982 Uncharacterized conser 97.4 0.00011 2.4E-09 67.7 3.2 152 166-320 42-210 (418)
40 KOG1259 Nischarin, modulator o 97.4 1.6E-05 3.5E-10 73.0 -2.6 128 189-320 282-410 (490)
41 KOG1259 Nischarin, modulator o 97.4 3.5E-05 7.6E-10 70.9 -0.6 61 208-268 174-245 (490)
42 KOG1859 Leucine-rich repeat pr 97.3 3E-05 6.5E-10 79.4 -1.8 203 108-320 52-290 (1096)
43 PF13855 LRR_8: Leucine rich r 97.2 6.5E-05 1.4E-09 53.4 -0.3 58 169-227 1-60 (61)
44 KOG2982 Uncharacterized conser 97.2 0.00043 9.4E-09 63.9 4.8 182 142-325 71-265 (418)
45 KOG4658 Apoptotic ATPase [Sign 97.1 8.9E-05 1.9E-09 81.0 -0.9 78 168-247 570-651 (889)
46 PRK15386 type III secretion pr 97.1 0.00062 1.3E-08 67.0 4.9 69 307-379 50-120 (426)
47 PRK15386 type III secretion pr 97.0 0.0014 3.1E-08 64.5 6.2 26 309-337 94-119 (426)
48 KOG3665 ZYG-1-like serine/thre 96.9 0.00021 4.6E-09 76.0 -0.1 145 190-336 121-281 (699)
49 COG5238 RNA1 Ran GTPase-activa 96.5 0.002 4.3E-08 58.9 2.8 95 131-227 18-131 (388)
50 KOG4237 Extracellular matrix p 96.4 8.6E-05 1.9E-09 70.9 -6.4 49 155-203 76-128 (498)
51 COG4886 Leucine-rich repeat (L 96.3 0.0022 4.8E-08 64.6 2.4 145 168-319 115-265 (394)
52 PF13855 LRR_8: Leucine rich r 96.2 0.00071 1.5E-08 48.0 -1.3 39 280-319 21-59 (61)
53 KOG2739 Leucine-rich acidic nu 96.2 0.00054 1.2E-08 62.3 -2.4 83 167-249 41-127 (260)
54 KOG2123 Uncharacterized conser 96.1 0.0004 8.7E-09 63.5 -3.4 96 237-336 18-123 (388)
55 COG4886 Leucine-rich repeat (L 96.0 0.003 6.6E-08 63.6 2.0 168 143-321 117-289 (394)
56 PF12799 LRR_4: Leucine Rich r 96.0 0.0044 9.6E-08 40.5 1.9 34 170-203 2-36 (44)
57 KOG3864 Uncharacterized conser 96.0 0.0018 3.9E-08 56.6 -0.0 91 158-248 90-186 (221)
58 PLN03150 hypothetical protein; 95.7 0.0095 2.1E-07 63.5 4.1 88 239-327 419-508 (623)
59 PF07723 LRR_2: Leucine Rich R 95.7 0.016 3.4E-07 33.0 3.1 25 192-216 1-26 (26)
60 KOG2739 Leucine-rich acidic nu 95.3 0.003 6.5E-08 57.5 -1.2 83 237-319 64-153 (260)
61 PLN03150 hypothetical protein; 95.3 0.015 3.3E-07 62.0 3.9 79 170-249 419-501 (623)
62 KOG1644 U2-associated snRNP A' 95.3 0.025 5.3E-07 49.7 4.3 60 168-228 63-125 (233)
63 KOG1644 U2-associated snRNP A' 94.6 0.069 1.5E-06 47.0 5.3 78 169-249 42-124 (233)
64 KOG0281 Beta-TrCP (transducin 94.2 0.014 3.1E-07 54.7 0.3 40 14-53 69-112 (499)
65 PF12799 LRR_4: Leucine Rich r 94.2 0.059 1.3E-06 35.1 3.0 34 284-319 1-34 (44)
66 COG5238 RNA1 Ran GTPase-activa 93.7 0.13 2.9E-06 47.3 5.5 48 430-477 214-262 (388)
67 KOG0532 Leucine-rich repeat (L 93.4 0.0019 4.1E-08 64.9 -7.3 155 160-319 112-270 (722)
68 KOG0531 Protein phosphatase 1, 93.3 0.0095 2.1E-07 60.4 -2.9 80 165-248 91-172 (414)
69 KOG2123 Uncharacterized conser 92.2 0.017 3.7E-07 53.2 -2.4 79 167-245 39-124 (388)
70 KOG0531 Protein phosphatase 1, 91.5 0.028 6.1E-07 57.0 -2.1 81 165-248 114-196 (414)
71 KOG0532 Leucine-rich repeat (L 91.3 0.012 2.6E-07 59.4 -4.7 66 159-227 134-200 (722)
72 PLN03215 ascorbic acid mannose 91.3 0.12 2.7E-06 50.5 2.2 38 19-56 3-41 (373)
73 KOG2997 F-box protein FBX9 [Ge 90.9 0.11 2.5E-06 48.5 1.5 35 18-52 105-144 (366)
74 KOG3864 Uncharacterized conser 89.1 0.12 2.6E-06 45.5 0.1 61 281-341 122-187 (221)
75 KOG1859 Leucine-rich repeat pr 88.3 0.04 8.6E-07 57.4 -3.9 13 191-203 187-199 (1096)
76 PF13516 LRR_6: Leucine Rich r 83.7 0.66 1.4E-05 25.5 1.2 22 190-211 1-22 (24)
77 KOG0274 Cdc4 and related F-box 82.9 0.58 1.3E-05 48.7 1.4 40 14-53 102-141 (537)
78 smart00367 LRR_CC Leucine-rich 82.2 1.1 2.4E-05 25.3 1.7 20 191-210 2-22 (26)
79 PF13013 F-box-like_2: F-box-l 77.4 1.3 2.9E-05 35.2 1.4 30 19-48 21-50 (109)
80 PF13504 LRR_7: Leucine rich r 77.1 1.5 3.3E-05 21.9 1.1 13 170-182 2-14 (17)
81 PF13306 LRR_5: Leucine rich r 76.0 0.57 1.2E-05 38.4 -1.1 55 168-225 11-67 (129)
82 PF13306 LRR_5: Leucine rich r 73.7 0.56 1.2E-05 38.5 -1.7 9 283-291 80-88 (129)
83 PF08387 FBD: FBD; InterPro: 73.4 2.8 6E-05 28.2 2.0 37 370-408 13-50 (51)
84 KOG4579 Leucine-rich repeat (L 73.1 0.69 1.5E-05 38.3 -1.2 63 166-230 50-114 (177)
85 smart00368 LRR_RI Leucine rich 66.9 5 0.00011 23.0 1.9 21 191-211 2-22 (28)
86 PF00560 LRR_1: Leucine Rich R 65.0 4 8.6E-05 21.9 1.1 9 311-319 2-10 (22)
87 PF09372 PRANC: PRANC domain; 58.6 7 0.00015 30.4 1.9 26 17-42 69-94 (97)
88 smart00579 FBD domain in FBox 57.1 9.6 0.00021 27.6 2.3 40 370-411 4-44 (72)
89 KOG3763 mRNA export factor TAP 53.7 7.3 0.00016 39.9 1.6 58 169-228 218-282 (585)
90 KOG3926 F-box proteins [Amino 52.2 3.5 7.7E-05 37.9 -0.8 54 15-68 197-257 (332)
91 KOG3763 mRNA export factor TAP 41.7 7.8 0.00017 39.7 -0.3 80 187-266 214-307 (585)
92 KOG4408 Putative Mg2+ and Co2+ 37.9 8.9 0.00019 36.6 -0.5 39 21-59 9-47 (386)
93 smart00370 LRR Leucine-rich re 34.0 22 0.00048 19.6 0.9 13 191-203 2-14 (26)
94 smart00369 LRR_TYP Leucine-ric 34.0 22 0.00048 19.6 0.9 13 191-203 2-14 (26)
95 KOG4579 Leucine-rich repeat (L 26.5 22 0.00048 29.8 0.1 25 389-413 89-113 (177)
96 COG4829 CatC1 Muconolactone de 26.1 15 0.00032 27.4 -0.9 35 23-57 11-47 (98)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.5e-19 Score=160.41 Aligned_cols=258 Identities=24% Similarity=0.328 Sum_probs=162.8
Q ss_pred cCCCCChHHHHHHhcCCChhHHHhhhcccccchhh------hccCceEEEecCccCCCCCCCcccccccccccchhhhhH
Q 011021 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV 92 (495)
Q Consensus 19 ~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (495)
-+..||||++..|||.|+.+|+.+.+.|||||.++ |... +...+...+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p----------------------- 150 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP----------------------- 150 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh-----------------------
Confidence 37789999999999999999999999999999875 5432 333333221
Q ss_pred HHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHH--HHcCceEeEEEeecCCCcccccCcccccCCc
Q 011021 93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANS 170 (495)
Q Consensus 93 ~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a--~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~ 170 (495)
+...+.+ . ..+..|++--... .. .+...++ .+..++.++ +.........+...+..|..
T Consensus 151 ----~~l~~l~----~--rgV~v~Rlar~~~---~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 151 ----DVLGRLL----S--RGVIVFRLARSFM---DQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSK 211 (419)
T ss_pred ----hHHHHHH----h--CCeEEEEcchhhh---cC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHh
Confidence 1122222 1 2344444431111 11 1122222 224577777 54434444555556667888
Q ss_pred ceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcce---eecC-CCCccEE
Q 011021 171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIM 243 (495)
Q Consensus 171 L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~---~i~~-l~~L~~L 243 (495)
|+.|.|.|.++..+. ....=.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|...... .+.+ -++|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 899999888887654 445667888899988876 88888888889999999999988764432 1111 2677777
Q ss_pred EeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEecCCCCC
Q 011021 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLP 322 (495)
Q Consensus 244 ~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 322 (495)
++++|...+..- ....-...||+|.+|+++.+. ++++.+.. +.+|+.|++|.++.|..+
T Consensus 292 NlsG~rrnl~~s-------------------h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 292 NLSGYRRNLQKS-------------------HLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhHhhhhhh-------------------HHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC
Confidence 777775111110 011112368888888887655 45544444 467888999999988654
Q ss_pred ccc----cccccccceEEeccCC
Q 011021 323 GKI----KISSNQLKNLLFRSCK 341 (495)
Q Consensus 323 ~~i----~~~~~~L~~L~l~~c~ 341 (495)
..- ....|.|.+|++.+|-
T Consensus 352 ~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 352 IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ChHHeeeeccCcceEEEEecccc
Confidence 321 1245778888777763
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=3.8e-16 Score=175.24 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=162.6
Q ss_pred cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
.+++.|+ +..+. -...+|..++ .+++|++|+|++|.+......+.+++|++|+|++|.++.. +...+.++++|++
T Consensus 93 ~~L~~L~--Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~ 168 (968)
T PLN00113 93 PYIQTIN--LSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKV 168 (968)
T ss_pred CCCCEEE--CCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCE
Confidence 6788887 54322 1236777776 6889999999998876544456788899999988887432 2334678888999
Q ss_pred EEEEecCCCcce--eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecccc
Q 011021 221 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (495)
Q Consensus 221 L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 296 (495)
|++++|...+.. .+.++++|+.|++.+|. . .+.......++|+.|+++++......+..++.+++|++|+++++.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 999888643322 34467888888888775 1 1111112467888888875555444555667788888888888776
Q ss_pred ChHHHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEe---ccCCccceeeeccccc----ceE
Q 011021 297 ADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI----PII 366 (495)
Q Consensus 297 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~----~~~ 366 (495)
++.... .+.++++|+.|++.+|...+.++. ..++|+.|+++.|.....+. ...++|+.+++.++.+ |..
T Consensus 249 ~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 653332 245678888888887754333332 34567777777664322221 2356777777776653 233
Q ss_pred eecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021 367 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 367 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
+..+++|+.|+++.+.. ...++..++.+++|+.|+++
T Consensus 328 ~~~l~~L~~L~L~~n~l-----~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKF-----SGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred HhcCCCCCEEECcCCCC-----cCcCChHHhCCCCCcEEECC
Confidence 44567777777754433 22345566666777766553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=4.7e-16 Score=174.43 Aligned_cols=307 Identities=16% Similarity=0.112 Sum_probs=179.4
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
.++++|+ +..+. ....+|..+..+++|++|++++|.+.... ....+++|++|++++|.+... +...+.++++|+
T Consensus 236 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 311 (968)
T PLN00113 236 TSLNHLD--LVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLE 311 (968)
T ss_pred CCCCEEE--CcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCc
Confidence 5677777 43221 12356667777778888888877764322 455677777887777766322 233456677777
Q ss_pred EEEEEecCCCcce--eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCC-----------------------
Q 011021 220 DLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGA----------------------- 272 (495)
Q Consensus 220 ~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~----------------------- 272 (495)
+|++.+|...+.. .+.++++|+.|++.+|. . .+.......++|+.|+++.+..
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 7777776543222 23345667777766664 1 1111111334555555543222
Q ss_pred -CCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe-
Q 011021 273 -RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID- 347 (495)
Q Consensus 273 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~- 347 (495)
....+..++.+++|+.|++.+|.+++.... .+..+++|+.|++++|...+.++ ...++|+.|.+.+|.....+.
T Consensus 392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred ecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 222222344556666666666655543222 23456666677766664333222 135667777777665432222
Q ss_pred -ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceeccccccc
Q 011021 348 -VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELS 422 (495)
Q Consensus 348 -~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~ 422 (495)
...++|+.++++++.+. ..+.++++|+.|+++.+.. ...+|..+.++++|+.|+++.+.... ..|+.+.
T Consensus 471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~ 544 (968)
T PLN00113 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL-----SGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFS 544 (968)
T ss_pred ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc-----eeeCChHHcCccCCCEEECCCCcccc-cCChhHh
Confidence 23466778888776642 3445677888888865544 33467778888889977765433322 2477777
Q ss_pred ccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 423 ECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 423 ~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
++ ++|+.|++++|.-.+..|. .+..++.|++|.+.++
T Consensus 545 ~l-----~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 545 EM-----PVLSQLDLSQNQLSGEIPK---NLGNVESLVQVNISHN 581 (968)
T ss_pred Cc-----ccCCEEECCCCcccccCCh---hHhcCcccCEEeccCC
Confidence 76 8899999998886665553 4444677888888776
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.60 E-value=4.5e-17 Score=153.42 Aligned_cols=324 Identities=15% Similarity=0.180 Sum_probs=182.4
Q ss_pred CCcCC-CCChHHHHHHhcCCChhHHHhhhcccccchhh------hccCceEEEecCccCCCCCCCcccccccccccchhh
Q 011021 17 MDRIS-ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFS 89 (495)
Q Consensus 17 ~d~is-~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (495)
.+.++ .||.|++.+|||+|+++...|++++|+-|.-+ |..+..+.|.... +.
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-----~g---------------- 126 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-----DG---------------- 126 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-----CC----------------
Confidence 34444 59999999999999999999999999999865 5554333322111 00
Q ss_pred hhHHHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCC
Q 011021 90 ETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSAN 169 (495)
Q Consensus 90 ~~~~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~ 169 (495)
..|.... . +.++.+++++++-... .....+-.....|+
T Consensus 127 -------~VV~~~~-~--Rcgg~lk~LSlrG~r~--------------------------------v~~sslrt~~~~Cp 164 (483)
T KOG4341|consen 127 -------GVVENMI-S--RCGGFLKELSLRGCRA--------------------------------VGDSSLRTFASNCP 164 (483)
T ss_pred -------cceehHh-h--hhcccccccccccccc--------------------------------CCcchhhHHhhhCC
Confidence 0111111 1 1224455555442211 01122222334567
Q ss_pred cceEEEEeccccCCC-C---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcce----eecCCCCc
Q 011021 170 SVTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL----CVSKASKL 240 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~-~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~----~i~~l~~L 240 (495)
++++|.+.+|...+. . ....|+.|++|+|..|.. ++..++.+..+||+|++|++++|+.+..- ...++..+
T Consensus 165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l 244 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKEL 244 (483)
T ss_pred chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhh
Confidence 777777777753221 1 334677788888877554 77777777778888888888888765542 22356667
Q ss_pred cEEEecccc-c---cceEEEEeCCcceEEEEeecCC--CCceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcE
Q 011021 241 KIMEIRSFS-E---EIEIVEISVPSLQQLTLLFYGA--RRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLED 313 (495)
Q Consensus 241 ~~L~i~~c~-~---~l~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~ 313 (495)
+.+...+|. . .+..+.-.++-+..+++..|.. +......--.+..|+.|..+++. +++..+..+..++++|+.
T Consensus 245 ~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~ 324 (483)
T KOG4341|consen 245 EKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQV 324 (483)
T ss_pred hhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEE
Confidence 777666776 1 1222222334444444332211 00000011135566666666543 555566666667777777
Q ss_pred EEecCCCCCcc-----ccccccccceEEeccCCC-----ccEEeccCCccceeeeccccc------c---eEeecCCCCc
Q 011021 314 LFVTRCCLPGK-----IKISSNQLKNLLFRSCKY-----LKVIDVDAPNLLLFTYEFNPI------P---IISINVPCPW 374 (495)
Q Consensus 314 L~L~~~~~~~~-----i~~~~~~L~~L~l~~c~~-----l~~l~~~~p~L~~l~~~~~~~------~---~~~~~~~~L~ 374 (495)
|.+..|..... +...++.|+.+++..|.. +..+..+||.|+.+.++.+.. . .....+..|+
T Consensus 325 l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 325 LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred EeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 77777754332 233566777777766653 234455677777666664331 1 1223455777
Q ss_pred eEEEEEecccchhhhcchHHHhccCCccceEEE
Q 011021 375 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKL 407 (495)
Q Consensus 375 ~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l 407 (495)
.++++.+.... +..-+++..+++||++++
T Consensus 405 ~lEL~n~p~i~----d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 405 VLELDNCPLIT----DATLEHLSICRNLERIEL 433 (483)
T ss_pred eeeecCCCCch----HHHHHHHhhCcccceeee
Confidence 77886544422 334567778888887555
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=7.7e-13 Score=149.47 Aligned_cols=258 Identities=16% Similarity=0.146 Sum_probs=149.8
Q ss_pred cCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEE
Q 011021 167 SANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIM 243 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L 243 (495)
...+|+.|++.++.+...+ +...+++|+.|+|+++..-. .++. ++.+++|++|++.+|..+..++ +..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4567777777777665543 45677888888887764311 1111 4567888888888887655433 2356777777
Q ss_pred EeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH----------------------
Q 011021 244 EIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN---------------------- 299 (495)
Q Consensus 244 ~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------- 299 (495)
++.+|. .+..+. +..++|+.|++++|......+. ..++|+.|++.++.+..-
T Consensus 687 ~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCC-CcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 777776 333322 2456667776663322111111 123444454444432210
Q ss_pred ------HHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEec--cCCccceeeeccccc-ceEe
Q 011021 300 ------EFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDV--DAPNLLLFTYEFNPI-PIIS 367 (495)
Q Consensus 300 ------~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~--~~p~L~~l~~~~~~~-~~~~ 367 (495)
........+++|+.|++.+|.....++. .+++|+.|.+.+|.+++.++. ..++|++++++++.. ....
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 0000111246788888888766665554 356778888888888877653 367788888887642 1111
Q ss_pred ecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE-EecceecccccccccCCCCCCccceeEEEecCCC
Q 011021 368 INVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL-YSTKVLYNLDELSECSPSLPLQVENLELHTNVPL 443 (495)
Q Consensus 368 ~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~ 443 (495)
...++|+.|+++.+ . +..+|..++++++|+.|++.. .....+ |.....+ +.|+.|.+++|+..
T Consensus 843 ~~~~nL~~L~Ls~n----~--i~~iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L-----~~L~~L~l~~C~~L 906 (1153)
T PLN03210 843 DISTNISDLNLSRT----G--IEEVPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKL-----KHLETVDFSDCGAL 906 (1153)
T ss_pred ccccccCEeECCCC----C--CccChHHHhcCCCCCEEECCCCCCcCcc--Ccccccc-----cCCCeeecCCCccc
Confidence 12357777777432 2 455777888888888777743 233333 4444444 66777777777643
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=7.8e-13 Score=149.43 Aligned_cols=242 Identities=17% Similarity=0.116 Sum_probs=173.3
Q ss_pred cccCcccccCCcceEEEEeccc-cCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec-C
Q 011021 159 YTLPQAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-K 236 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~-~ 236 (495)
..+|..+..+++|+.|+|++|. +...+....+++|++|+|++|..- ..++..+.++++|++|++.+|..++.++.. +
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGIN 702 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence 3456667778999999999875 444445678899999999998652 123444678999999999999887766543 5
Q ss_pred CCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeE------------------------------EeecCCCc
Q 011021 237 ASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVV------------------------------EVARSPHL 286 (495)
Q Consensus 237 l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~~L 286 (495)
+++|+.|.+.+|. .+..+....++|+.|+++.+... ..+. ....+++|
T Consensus 703 l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 703 LKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCEEeCCCCC-CccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 7899999999997 44444333456777766633321 1110 01123578
Q ss_pred cEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc--cccccceEEeccCCCccEEeccCCccceeeeccccc-
Q 011021 287 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPI- 363 (495)
Q Consensus 287 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~--~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~- 363 (495)
+.|+++++......... +.++++|+.|+|.+|..++.++. ..++|+.|.+++|.+++.+.-...+++.+++.++.+
T Consensus 781 ~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred hheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 88888877644433333 56899999999999988887764 367899999999999887755567899999988764
Q ss_pred --ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE
Q 011021 364 --PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL 409 (495)
Q Consensus 364 --~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 409 (495)
|..+..+++|+.++++.|.. +..++..+..+++|+.++++.
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~-----L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNN-----LQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCC-----cCccCcccccccCCCeeecCC
Confidence 44566789999999976665 555666677788888777743
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=2.9e-13 Score=132.80 Aligned_cols=284 Identities=16% Similarity=0.118 Sum_probs=129.2
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
.+++++. +. ...-..+|.......+|++|+|.+|.++... ....+|.|++|+|+.|.++.-... -+..-++++
T Consensus 102 ~nLq~v~--l~--~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEVN--LN--KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIK 176 (873)
T ss_pred Ccceeee--ec--cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCce
Confidence 4555555 32 1233456655555566777777776654432 344566666666666655211100 022334566
Q ss_pred EEEEEecCC--CcceeecCCCCccEEEecccc-ccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEee---
Q 011021 220 DLCFSNCWG--LKHLCVSKASKLKIMEIRSFS-EEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV--- 292 (495)
Q Consensus 220 ~L~L~~c~~--l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~--- 292 (495)
+|+|.+|.. +..-...++.+|..|.++.+. ..+..... ..|+|+.|++..+.........+.++++|+.|.+.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 666666643 111222334455555555543 11111111 24555555555332221112233344444444444
Q ss_pred ---------------------ccccChHHHHHHhhcCCCCcEEEecCCCCCcccc----ccccccceEEeccCCCccEEe
Q 011021 293 ---------------------SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID 347 (495)
Q Consensus 293 ---------------------~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~~l~~l~ 347 (495)
.|++..- -.+++-++..|+.|+++.+ .++.|. .-+++|+.|+++.. .+..+.
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~ 333 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLD 333 (873)
T ss_pred cccccCcceeeecccceeecccchhhhh-hcccccccchhhhhccchh-hhheeecchhhhcccceeEecccc-ccccCC
Confidence 3333221 1122334455555555543 122221 12345555554432 122221
Q ss_pred c----cCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccc
Q 011021 348 V----DAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLD 419 (495)
Q Consensus 348 ~----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~ 419 (495)
- ....|+.+.++.+.+. ..+..+++|++|+++.+..... ++.....+..+++|++|.+.....+.+ ...
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~--IEDaa~~f~gl~~LrkL~l~gNqlk~I-~kr 410 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC--IEDAAVAFNGLPSLRKLRLTGNQLKSI-PKR 410 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE--EecchhhhccchhhhheeecCceeeec-chh
Confidence 1 1233444555554432 2334466677666643322222 333344555577777666655544444 222
Q ss_pred cccccCCCCCCccceeEEEecC
Q 011021 420 ELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 420 ~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
.|..+ ++|++|++.+|.
T Consensus 411 Afsgl-----~~LE~LdL~~Na 427 (873)
T KOG4194|consen 411 AFSGL-----EALEHLDLGDNA 427 (873)
T ss_pred hhccC-----cccceecCCCCc
Confidence 45555 667777777765
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.26 E-value=5.6e-13 Score=130.82 Aligned_cols=295 Identities=14% Similarity=0.122 Sum_probs=184.4
Q ss_pred cccCccccc-CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCC--Cccee
Q 011021 159 YTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLC 233 (495)
Q Consensus 159 ~~lp~~l~~-~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~~~ 233 (495)
.++|..-+. -.++++|+|++|+++... .+.++.+|..|.|++|+++.- ....+++.|.||.|+|..|.. ...+.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhh
Confidence 344443343 378999999999987654 677888999999999998432 234577899999999999864 33456
Q ss_pred ecCCCCccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 234 VSKASKLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
..++++|+.|.+..+. ..+..-. ..+.+++.|++..+....-..-.+-++..|+.|++++|.+..-....+ +-+++|
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL 319 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKL 319 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh-hhcccc
Confidence 6688999999998775 2332222 357788888887443322222233468888889998887654333332 457889
Q ss_pred cEEEecCCCCCccccc-c---ccccceEEeccCCCccEE---e-ccCCccceeeecccccc-------eEeecCCCCceE
Q 011021 312 EDLFVTRCCLPGKIKI-S---SNQLKNLLFRSCKYLKVI---D-VDAPNLLLFTYEFNPIP-------IISINVPCPWKV 376 (495)
Q Consensus 312 ~~L~L~~~~~~~~i~~-~---~~~L~~L~l~~c~~l~~l---~-~~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l 376 (495)
+.|+|+.+. +..+.. + ...|+.|.++... +..+ . ....+|+.++++.+.+. ..+..+++|++|
T Consensus 320 ~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 320 KELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred eeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 999998763 222322 2 2355555554432 2222 1 23567777887776632 234468999999
Q ss_pred EEEEecccchhhhcch-HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC--CccHHHHHHHH
Q 011021 377 SFVCKGVLNTHWYLKL-KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP--LSDYETLLDCV 453 (495)
Q Consensus 377 ~i~~~~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~--~~~~~~l~~~l 453 (495)
.+..+. ++.+ +..+..+..||.|++.-...-. +.|+.|..+ .|+.|.+.+-.. ...+.++...|
T Consensus 398 ~l~gNq------lk~I~krAfsgl~~LE~LdL~~NaiaS-Iq~nAFe~m------~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 398 RLTGNQ------LKSIPKRAFSGLEALEHLDLGDNAIAS-IQPNAFEPM------ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred eecCce------eeecchhhhccCcccceecCCCCccee-ecccccccc------hhhhhhhcccceEEeccHHHHHHHH
Confidence 994333 3343 5678899999977774332222 356666443 688887775442 22343433332
Q ss_pred hhhccCCeeEEeeccccc
Q 011021 454 FWICHPRTLRVNVMFEED 471 (495)
Q Consensus 454 ~~~~~l~~l~i~~~~~~~ 471 (495)
-. -.++.-.+..|.-||
T Consensus 465 ~~-~~lq~sv~a~CayPe 481 (873)
T KOG4194|consen 465 YR-RKLQSSVIAKCAYPE 481 (873)
T ss_pred Hh-cccccceeeeccCCc
Confidence 22 246666667774333
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=1.9e-12 Score=128.10 Aligned_cols=268 Identities=16% Similarity=0.083 Sum_probs=165.4
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-- 233 (495)
....+|+.+|....|+.|+|++|.+...| ....-.++-.|+|++|.++ .....++.+...|-.|+|++|.. ..++
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL-e~LPPQ 168 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL-EMLPPQ 168 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh-hhcCHH
Confidence 45677888888888999999988876655 5566678888888888872 12234455677777888887753 2222
Q ss_pred ecCCCCccEEEecccc---ccceEEEEeCCcceEEEEeecCC-CCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021 234 VSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP 309 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (495)
+..+..|++|.++++. .++..+ ....+|+.|.++.... ...++.++..+.+|..++++.|.++- ..+-+-+++
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~ 245 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLR 245 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhh
Confidence 2356678888888775 111111 1344566667662221 22355566677888888888777654 233344678
Q ss_pred CCcEEEecCCCCCccccc---cccccceEEeccCCCccEEe---ccCCccceeeecccc-----cceEeecCCCCceEEE
Q 011021 310 SLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNP-----IPIISINVPCPWKVSF 378 (495)
Q Consensus 310 ~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~-----~~~~~~~~~~L~~l~i 378 (495)
+|+.|.++++. ++.+.. ...+|+.|.++.. .|..++ ...++|+.+....++ +|..++.+..|+.+..
T Consensus 246 ~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 246 NLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 88888888762 122211 1235565555432 122222 123444444433333 3444555666666555
Q ss_pred EEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021 379 VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS 444 (495)
Q Consensus 379 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~ 444 (495)
..+. ++.+|+.+..|..|++|.++....-.. |+.+.-+ +.|+.|++..|+++.
T Consensus 324 anN~------LElVPEglcRC~kL~kL~L~~NrLiTL--PeaIHlL-----~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 324 ANNK------LELVPEGLCRCVKLQKLKLDHNRLITL--PEAIHLL-----PDLKVLDLRENPNLV 376 (1255)
T ss_pred hccc------cccCchhhhhhHHHHHhcccccceeec--hhhhhhc-----CCcceeeccCCcCcc
Confidence 2221 567899999999999888876655544 8877655 889999999887433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.03 E-value=1.1e-12 Score=129.73 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=143.9
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-- 233 (495)
.-..+|..+..+.+|++|.+.+|++.... ....+|+|+.+.+..|.+...+++.-+.....|..|+|++|.. +..+
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~ 121 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTN 121 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh-hhcchh
Confidence 34456666666677777777766655433 4455666666666666663333443344555666666666542 1111
Q ss_pred ecCCCCccEEEecccc--ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 234 VSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
+...+++-.|+++.+. .-...+.++...|-.|+++.+.. ...+..+..+.+|++|+|++|.+.-.-+.++ +...+|
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL 199 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSL 199 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhh
Confidence 1123455556665553 11112223444555555552222 2222233345556666666555443333332 234445
Q ss_pred cEEEecCC-CCCcccccc--------------------------ccccceEEeccCCCccEEecc---CCccceeeeccc
Q 011021 312 EDLFVTRC-CLPGKIKIS--------------------------SNQLKNLLFRSCKYLKVIDVD---APNLLLFTYEFN 361 (495)
Q Consensus 312 ~~L~L~~~-~~~~~i~~~--------------------------~~~L~~L~l~~c~~l~~l~~~---~p~L~~l~~~~~ 361 (495)
+.|++++. ..+..++.+ .++|++|.+++. .++.+... -.++++++++.+
T Consensus 200 ~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 200 SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc
Confidence 55555443 112222222 223333333321 12222211 123344444444
Q ss_pred cc---ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEE
Q 011021 362 PI---PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELH 438 (495)
Q Consensus 362 ~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~ 438 (495)
++ |.....++.|++|....+.. + +..+|..++++..|+.+.......+.+ |+.+..+ +.|+.|.+.
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL--~--FeGiPSGIGKL~~Levf~aanN~LElV--PEglcRC-----~kL~kL~L~ 347 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKL--T--FEGIPSGIGKLIQLEVFHAANNKLELV--PEGLCRC-----VKLQKLKLD 347 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcc--c--ccCCccchhhhhhhHHHHhhccccccC--chhhhhh-----HHHHHhccc
Confidence 42 22333455565555532221 1 456777788888887555544444555 8888777 788888888
Q ss_pred ecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 439 TNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 439 ~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
.|.- ..+| +++.-++-++.|.+..-
T Consensus 348 ~NrL-iTLP---eaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 348 HNRL-ITLP---EAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ccce-eech---hhhhhcCCcceeeccCC
Confidence 6643 3333 34444667777777543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=2.6e-09 Score=113.31 Aligned_cols=263 Identities=16% Similarity=0.043 Sum_probs=163.0
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.+-..|+ +.. ..-..+|..+. ++|+.|.+.+|.++..+ ...++|++|++++|.++. ++. ..+.|++|
T Consensus 201 ~~~~~Ld--Ls~--~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLN--VGE--SGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGLLEL 267 (788)
T ss_pred CCCcEEE--cCC--CCCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---ccccccee
Confidence 4455555 332 23346787664 47999999999887644 246899999999998742 222 35789999
Q ss_pred EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (495)
++.+|.. ..+.. ..++|+.|++.+|. +..+....++|+.|+++++.... .+. ...+|+.|++++|.++. +
T Consensus 268 ~Ls~N~L-~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~~--L 337 (788)
T PRK15387 268 SIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS--L 337 (788)
T ss_pred eccCCch-hhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCcccc-CCC---CcccccccccccCcccc--c
Confidence 9998853 32221 12578889988874 44444456789999998554322 111 13468888888877754 1
Q ss_pred HHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEe
Q 011021 302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCK 381 (495)
Q Consensus 302 ~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~ 381 (495)
.. ..++|+.|++++| .+..++...++|+.|.+.+. .+..++-...+|+.++++++.+...-...++|+.|+++.+
T Consensus 338 P~---lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 338 PT---LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 412 (788)
T ss_pred cc---cccccceEecCCC-ccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccCC
Confidence 11 1247899999876 34445544567777766543 3444433345788888888764411112457888888544
Q ss_pred cccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHH
Q 011021 382 GVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYET 448 (495)
Q Consensus 382 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 448 (495)
. +..+|... +.|+.|++..+....+ |+.+..+ ++++.|++++|+-....+.
T Consensus 413 ~------LssIP~l~---~~L~~L~Ls~NqLt~L--P~sl~~L-----~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 413 R------LTSLPMLP---SGLLSLSVYRNQLTRL--PESLIHL-----SSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred c------CCCCCcch---hhhhhhhhccCccccc--ChHHhhc-----cCCCeEECCCCCCCchHHH
Confidence 3 33344433 3456556644444444 7777777 7888999998885554433
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=2.2e-11 Score=115.40 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=126.9
Q ss_pred CcceEEEEeccccCCC-C---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcceeec----CCCC
Q 011021 169 NSVTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----KASK 239 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~-~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~----~l~~ 239 (495)
..|+.|.++||+-... + ....+|++++|.+.++.. ++..+..+...|+.|+.|++..|..++...+. +|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5789999999874322 2 446799999999999987 88999999999999999999999987765443 7899
Q ss_pred ccEEEecccc----ccceEEEEeCCcceEEEEeecCCCCce----eEEeecCCCccEEEeec-cccChHHHHHHhhcCCC
Q 011021 240 LKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVS-VYFADNEFNHLISKFPS 310 (495)
Q Consensus 240 L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~ 310 (495)
|+.++++.|. .++....-.+..++.+... |..... ...-+.++.+.++++.. +.+++.....+...+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k--GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLK--GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhc--ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 9999999998 1222233345556666554 221111 11112355556666543 44777777777778888
Q ss_pred CcEEEecCCCCCccc-----cccccccceEEeccCCCccE-----EeccCCccceeeecc
Q 011021 311 LEDLFVTRCCLPGKI-----KISSNQLKNLLFRSCKYLKV-----IDVDAPNLLLFTYEF 360 (495)
Q Consensus 311 L~~L~L~~~~~~~~i-----~~~~~~L~~L~l~~c~~l~~-----l~~~~p~L~~l~~~~ 360 (495)
|+.|+.++|..+... ...+++|+.+.+..|..+.. +.-+++.|+.++..+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 888888888665533 34567888888888876532 222344444444443
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.78 E-value=1.8e-09 Score=105.55 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred ccCcccccCCcceEEEEeccccCC--CC------CccCCCCCcEEEeeeEeeCh---HHHHHHHhcCCCccEEEEEecC
Q 011021 160 TLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~c~l~~--~~------~~~~l~~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
.++..+...++|++|+++++.+.. .. ....+++|+.|+++++.+.. ..+..+..+ ++|++|++++|.
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 344444445666666666655441 10 22345566666666666532 122222233 446666666654
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=6.8e-09 Score=101.38 Aligned_cols=61 Identities=20% Similarity=-0.037 Sum_probs=31.5
Q ss_pred CCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeC--hHHH---HHHHhcCCCccEEEEEecCC
Q 011021 168 ANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD--EQMV---QKLASECPLLEDLCFSNCWG 228 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~--~~~l---~~l~~~~p~Le~L~L~~c~~ 228 (495)
..+|++|++++|.+.... .....+.|++|+++++.++ ...+ ...+..++.|++|++++|..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 345666666666653321 2234555666666666553 2222 22334455666666666543
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.72 E-value=8.4e-09 Score=69.28 Aligned_cols=35 Identities=31% Similarity=0.723 Sum_probs=31.0
Q ss_pred CCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 54 (495)
Q Consensus 20 is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw 54 (495)
|+.||+|++.+||++|+.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.70 E-value=5.3e-08 Score=103.51 Aligned_cols=259 Identities=15% Similarity=0.055 Sum_probs=164.5
Q ss_pred CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c 248 (495)
..-..|+++++.+...|. .-.++|+.|++.+|.++. ++ ...|.|++|++++|. +..++. ..++|+.|++.+|
T Consensus 201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~-LtsLP~-lp~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCc-cCcccC-cccccceeeccCC
Confidence 456788999988876442 113589999999998842 22 246899999999984 443332 2479999999888
Q ss_pred cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS 328 (495)
Q Consensus 249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~ 328 (495)
. +..+....++|+.|+++.+... ..+. ..++|+.|++++|.++. +. ...++|+.|.+.+|. ++.++..
T Consensus 273 ~--L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~--Lp---~lp~~L~~L~Ls~N~-L~~LP~l 340 (788)
T PRK15387 273 P--LTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQ-LTSLPTL 340 (788)
T ss_pred c--hhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc--CC---CCcccccccccccCc-ccccccc
Confidence 4 3333333467889998855432 2222 25789999999988765 11 123468889888763 3445443
Q ss_pred ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021 329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
..+|+.|+++++ +++.++...++|+.+.+.++.+...-..+++|+.|+++.+. +..+|.. .++|+.|+++
T Consensus 341 p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~------Lt~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 341 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR------LTSLPVL---PSELKELMVS 410 (788)
T ss_pred ccccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecCCc------ccCCCCc---ccCCCEEEcc
Confidence 457899988764 45555444567777877776644111124578899885433 3334432 3568866664
Q ss_pred EEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccc
Q 011021 409 LYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEED 471 (495)
Q Consensus 409 ~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~ 471 (495)
......+ |.. |.+|+.|++++|.-. .+| ..+..+++++.|.+.+..+++
T Consensus 411 ~N~LssI--P~l--------~~~L~~L~Ls~NqLt-~LP---~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 411 GNRLTSL--PML--------PSGLLSLSVYRNQLT-RLP---ESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCcCCCC--Ccc--------hhhhhhhhhccCccc-ccC---hHHhhccCCCeEECCCCCCCc
Confidence 4433322 321 256888899887633 344 445567889999987775444
No 17
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-09 Score=99.27 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=81.5
Q ss_pred CcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccccceEEE-----EeCCcceEE
Q 011021 193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE-----ISVPSLQQL 265 (495)
Q Consensus 193 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~~l~~~~-----~~~p~L~~L 265 (495)
|+.|+|++..++...+..+++.|..|+.|.|.+...-+.+. +..-.+|+.|+++.|. ++.... -+|..|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHhhc
Confidence 44444444444444444444444444444444443222211 1111344444444444 222211 145556666
Q ss_pred EEeecCCCCc-eeEEeec-CCCccEEEeeccc--cChHHHHHHhhcCCCCcEEEecCCCCCccc----cccccccceEEe
Q 011021 266 TLLFYGARRP-RVVEVAR-SPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLF 337 (495)
Q Consensus 266 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i----~~~~~~L~~L~l 337 (495)
+++||+...+ +.+.+.+ -++|+.|+|+|+. +....+..+...||+|..|++++|..+..- ...++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6665554221 1111112 3578888888765 334455667789999999999999766542 235788999999
Q ss_pred ccCCCc
Q 011021 338 RSCKYL 343 (495)
Q Consensus 338 ~~c~~l 343 (495)
+.|..+
T Consensus 346 sRCY~i 351 (419)
T KOG2120|consen 346 SRCYDI 351 (419)
T ss_pred hhhcCC
Confidence 998754
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.2e-09 Score=101.60 Aligned_cols=176 Identities=20% Similarity=0.175 Sum_probs=120.1
Q ss_pred ccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCC
Q 011021 166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKAS 238 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~ 238 (495)
.+.+.|+...|.++.+..++ ....||+++.|+|+++-+ .-..+..++..+|+||.|+|+.|..... .....++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34577888888888877665 466899999999999988 6667778889999999999999864321 1122468
Q ss_pred CccEEEecccc---ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEE
Q 011021 239 KLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (495)
Q Consensus 239 ~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 315 (495)
.|+.|.+.+|. ..+..+...+|+|+.|.+..+...........-+..|++|+|+++.+-+.........+|.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999996 233445567899999999855321111122234668899999988866544334456788888888
Q ss_pred ecCCC--CCc-------cccccccccceEEeccCC
Q 011021 316 VTRCC--LPG-------KIKISSNQLKNLLFRSCK 341 (495)
Q Consensus 316 L~~~~--~~~-------~i~~~~~~L~~L~l~~c~ 341 (495)
+..|. .+. .....++.|+.|.+...+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 88761 111 112246677777665443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.47 E-value=7.8e-08 Score=100.17 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=11.8
Q ss_pred cccCcccccCCcceEEEEecccc
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRL 181 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l 181 (495)
..+|..+...++|++|+++++.+
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred hcCchhHHhhhcccccccchhcc
Confidence 44454444455555555555543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=1.6e-07 Score=100.39 Aligned_cols=177 Identities=16% Similarity=0.098 Sum_probs=97.8
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.+..+|. +. ......+|..+ .++|+.|+|++|.+...+ ...+++|++|++++|.++. ++..+ .+.|+.|
T Consensus 178 ~~~~~L~--L~--~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELR--LK--ILGLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred cCceEEE--eC--CCCcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 4555555 32 22334566544 257889999998877544 2234689999998887742 22211 3478888
Q ss_pred EEEecCCCcceeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (495)
++++|.. ..++..-..+|+.|+++++. +..+.. -.++|+.|+++++.... .+..+ .++|+.|++++|.++.
T Consensus 247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~-- 318 (754)
T PRK15370 247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA-- 318 (754)
T ss_pred ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc--
Confidence 8888863 23222212478888887653 332221 12467777777443321 12111 2367777777776653
Q ss_pred HHHHhhcCCCCcEEEecCCCCCcccccc-ccccceEEeccC
Q 011021 301 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSC 340 (495)
Q Consensus 301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~-~~~L~~L~l~~c 340 (495)
+.. ...++|+.|.+.+|. +..++.. .++|+.|+++++
T Consensus 319 LP~--~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N 356 (754)
T PRK15370 319 LPE--TLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN 356 (754)
T ss_pred CCc--cccccceeccccCCc-cccCChhhcCcccEEECCCC
Confidence 111 123577777777663 2333321 245666666554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.42 E-value=3.2e-07 Score=98.02 Aligned_cols=193 Identities=17% Similarity=0.110 Sum_probs=80.3
Q ss_pred cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc
Q 011021 170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~ 249 (495)
+...|+++++.++..+.. -.++|+.|+|++|.++. ++..+ +++|++|++.+|. +..++..-.++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcCCc
Confidence 345556655554433210 12356666666665531 11111 2456666666553 222221112356666666553
Q ss_pred ccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc-
Q 011021 250 EEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI- 327 (495)
Q Consensus 250 ~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~- 327 (495)
+..+.. ...+|+.|+++.+... ..+..+ .++|+.|++++|.++.- ...+ .++|+.|++.+|.. ..++.
T Consensus 253 --L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~L-t~LP~~ 322 (754)
T PRK15370 253 --ITELPERLPSALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNSL-TALPET 322 (754)
T ss_pred --cCcCChhHhCCCCEEECcCCccC-cccccc--CCCCcEEECCCCccccC-cccc---hhhHHHHHhcCCcc-ccCCcc
Confidence 212111 1234666666533221 112111 23566666665554420 0000 12455555555422 22221
Q ss_pred cccccceEEeccCCCccEEecc-CCccceeeecccccc-eEeecCCCCceEEEE
Q 011021 328 SSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPIP-IISINVPCPWKVSFV 379 (495)
Q Consensus 328 ~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~~-~~~~~~~~L~~l~i~ 379 (495)
..++|+.|.+.+|. +..++-. .++|+.++++++.+. +...-.++|+.|+|+
T Consensus 323 l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs 375 (754)
T PRK15370 323 LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVS 375 (754)
T ss_pred ccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECC
Confidence 12355555555543 2222211 245555665555432 111112456666654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.33 E-value=7.9e-08 Score=100.16 Aligned_cols=260 Identities=17% Similarity=0.094 Sum_probs=139.8
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCc-ceee
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCV 234 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-~~~i 234 (495)
....+|..+....+|+.|+++.+.+...+ ......+|++|.|.++.. ..++.-++...+|++|+++.+.... ...+
T Consensus 56 ~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 56 QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh--hcCchhHHhhhcccccccchhccCCCchhH
Confidence 34455555555666666666666554333 445566666666666655 2233334555666666666664322 1222
Q ss_pred cCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021 235 SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 314 (495)
..+..+..+...++. .+..+... .++.+++..+.....+...+..+.. .|++.++.+.. -.+.++++|+.|
T Consensus 134 ~~lt~~~~~~~s~N~-~~~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l 204 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNE-KIQRLGQT--SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVL 204 (1081)
T ss_pred HhhhHHHHHhhhcch-hhhhhccc--cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhh
Confidence 233344444443331 11111111 1333333322333334444444443 47887776652 124567788887
Q ss_pred EecCCCCCccccccccccceEEeccCCCccEEecc-CCccceeeeccccc---ceEeecCCCCceEEEEEecccchhhhc
Q 011021 315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNTHWYL 390 (495)
Q Consensus 315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~ 390 (495)
.... ..+..+.+..++++.|...+|+-.+...-. ..++++++++.+.+ |.+...+++|+.|+++.+. +.
T Consensus 205 ~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~------l~ 277 (1081)
T KOG0618|consen 205 HCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR------LV 277 (1081)
T ss_pred hhhh-cccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh------HH
Confidence 6664 345556667788888888887755322222 34577777777663 3445567788888774322 34
Q ss_pred chHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021 391 KLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 391 ~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
.++.-+-..++|+.|.+..+..+.+ |...... ..|.+|+++.|.
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yi--p~~le~~-----~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYI--PPFLEGL-----KSLRTLDLQSNN 321 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhC--CCccccc-----ceeeeeeehhcc
Confidence 4555555666666555544444444 5555444 667777777664
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-07 Score=90.31 Aligned_cols=152 Identities=22% Similarity=0.189 Sum_probs=84.2
Q ss_pred cCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec--CCCCcc
Q 011021 167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS--KASKLK 241 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~--~l~~L~ 241 (495)
..++|+.|+|+.|++..+. ....+++||.|.|++|.++...+..++..||.|+.|.+..|..+.....+ -+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 3567777777777654432 23457777888888877777777777778888888888877543222221 245777
Q ss_pred EEEecccc---ccceEEEEeCCcceEEEEeecCCCCc--eeE----EeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021 242 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRP--RVV----EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (495)
Q Consensus 242 ~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~~~--~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 312 (495)
.|+++++. .......-..|.|+.|.++.+|...- ... ....+++|+.|.+..|.+.+-....-+...++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 77777665 11112223556666666664444110 000 1123566666666666554311111123345555
Q ss_pred EEEecC
Q 011021 313 DLFVTR 318 (495)
Q Consensus 313 ~L~L~~ 318 (495)
.|.+..
T Consensus 330 ~l~~~~ 335 (505)
T KOG3207|consen 330 HLRITL 335 (505)
T ss_pred hhhccc
Confidence 555443
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.30 E-value=1.5e-09 Score=102.70 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021 394 KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS 444 (495)
Q Consensus 394 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~ 444 (495)
..++++..|..|++.-...+.+ |..++++ .++++|++.+|+...
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~I--Pp~Lgnm-----tnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQI--PPILGNM-----TNLRHLELDGNPFRQ 542 (565)
T ss_pred HHhhhhhhcceeccCCCchhhC--Chhhccc-----cceeEEEecCCccCC
Confidence 3588888888777755555555 9999999 999999999998543
No 25
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=2.1e-07 Score=62.83 Aligned_cols=37 Identities=41% Similarity=0.765 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHhcCCChhHHHhhhcccccchhhhcc
Q 011021 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (495)
Q Consensus 20 is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~ 56 (495)
+++||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5679999999999999999999999999999998654
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.20 E-value=2.2e-09 Score=101.47 Aligned_cols=154 Identities=18% Similarity=0.105 Sum_probs=70.1
Q ss_pred ccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCC
Q 011021 160 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS 238 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~ 238 (495)
.+|..++.|.+|..|++.++.+...+ ....+..|++|+...+-. +.++.-+++...|+-|++..+....-..+.+|.
T Consensus 151 slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs 228 (565)
T KOG0472|consen 151 SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEFPGCS 228 (565)
T ss_pred cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCCCccH
Confidence 34444444444444444444433222 222244444444444332 112222344455555555555432222444566
Q ss_pred CccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEe
Q 011021 239 KLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316 (495)
Q Consensus 239 ~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L 316 (495)
.|++|.+..+. +.+.+-. .+.+++..|++.++.. ...+..+-.+.+|+.|+++++.++. +..-++++ .|+.|.+
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhh
Confidence 66666665543 1111111 2556666666663332 2234343345566666666666554 11113344 5666666
Q ss_pred cCC
Q 011021 317 TRC 319 (495)
Q Consensus 317 ~~~ 319 (495)
.++
T Consensus 305 eGN 307 (565)
T KOG0472|consen 305 EGN 307 (565)
T ss_pred cCC
Confidence 665
No 27
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.13 E-value=1.5e-06 Score=56.31 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=31.6
Q ss_pred CChHHHHHHhcCCChhHHHhhhcccccchhhhcc
Q 011021 23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (495)
Q Consensus 23 LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~ 56 (495)
||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=6e-07 Score=78.29 Aligned_cols=128 Identities=17% Similarity=0.141 Sum_probs=40.1
Q ss_pred cCCcceEEEEeccccCCCCCcc-CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce-ee-cCCCCccEE
Q 011021 167 SANSVTNLRLVWCRLEQPFDSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CV-SKASKLKIM 243 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~-~i-~~l~~L~~L 243 (495)
++.++++|+|.|+.++..-..+ .+.+|+.|+|++|.+.. ++. +..++.|++|.+++|....-. .+ ..+|+|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3456788888887765433333 56778888888877731 221 345677777777776532110 11 124555555
Q ss_pred EeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChH-HH-HHHhhcCCCCcEEEecCC
Q 011021 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN-EF-NHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 244 ~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~l~~~~~~L~~L~L~~~ 319 (495)
.+.++. ... .....+..+|+|+.|++.+|.++.. .. ..++..+|+|+.|+-...
T Consensus 94 ~L~~N~----------------------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNK----------------------ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS-------------------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCc----------------------CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 554442 111 1112345688888888888877642 11 223557888888876654
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.03 E-value=4.8e-07 Score=84.63 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=27.5
Q ss_pred ccCCCCCcEEEeeeEee---ChHHHHHHHhcCCCccEEEEEecC
Q 011021 187 SIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 187 ~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
..++|.|++|+|+.|.+ +.+.+..++++|..|++|.+.+|.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 34566777777777777 334555667777777777777664
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=1.5e-06 Score=92.04 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=106.5
Q ss_pred CcceEEEEecccc-CCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021 169 NSVTNLRLVWCRL-EQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (495)
Q Consensus 169 ~~L~~L~L~~c~l-~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~ 244 (495)
.+|++|+++|... .... ....||+|++|.+.+..+..+.+..+..++|+|..|+|+++..-.-..++++++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 6788888888542 2111 34579999999999999966668888999999999999998754445566778888887
Q ss_pred eccccccceE-----EEEeCCcceEEEEeecCCCCce------eEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcE
Q 011021 245 IRSFSEEIEI-----VEISVPSLQQLTLLFYGARRPR------VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED 313 (495)
Q Consensus 245 i~~c~~~l~~-----~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 313 (495)
+.+-. +.. --....+|+.|+++........ ...-..+|+|+.|+.++..+.++.+..+....|+|+.
T Consensus 202 mrnLe--~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 202 MRNLE--FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred ccCCC--CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 76543 111 1135788999999843322111 0112348999999999999999888888888888888
Q ss_pred EEecCC
Q 011021 314 LFVTRC 319 (495)
Q Consensus 314 L~L~~~ 319 (495)
...-+|
T Consensus 280 i~~~~~ 285 (699)
T KOG3665|consen 280 IAALDC 285 (699)
T ss_pred hhhhhh
Confidence 776544
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=1.7e-06 Score=80.95 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=50.4
Q ss_pred CcccceEEEEEeccCCCCChhHHHHHHHHHHH--cCceEeEEEeecCCCcccccCc-------ccccCCcceEEEEeccc
Q 011021 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQ-------AIFSANSVTNLRLVWCR 180 (495)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~--~~l~~L~l~l~~~~~~~~~lp~-------~l~~~~~L~~L~L~~c~ 180 (495)
...+.+++++-. +...-..+|+..+.+ +.+++..+.-.+......++|. .+..|+.|++|+|+.|.
T Consensus 29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 344555555422 222356778877766 3444444211122222234443 33456788888888887
Q ss_pred cCCCC------CccCCCCCcEEEeeeEeeC
Q 011021 181 LEQPF------DSIMLCSLKKLTLERVCLD 204 (495)
Q Consensus 181 l~~~~------~~~~l~~L~~L~L~~~~~~ 204 (495)
+...+ -..++..|+.|.|.+|-++
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 65432 2345788888888888774
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.87 E-value=6.6e-07 Score=84.95 Aligned_cols=272 Identities=13% Similarity=0.002 Sum_probs=144.7
Q ss_pred CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee---cCCCCccEE
Q 011021 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV---SKASKLKIM 243 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i---~~l~~L~~L 243 (495)
+.-+.++|..|.++..| .+..+++||.|+|++|.++.-. +..+.+.+.|-+|.+.++..+++++- .++.+|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 34577888888776544 6778889999999988873222 23356777888888888666665543 355666666
Q ss_pred Eecccc--ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH--------HHH---HHhhcCCC
Q 011021 244 EIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN--------EFN---HLISKFPS 310 (495)
Q Consensus 244 ~i~~c~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~---~l~~~~~~ 310 (495)
.+..+. ......--+.++|..|.+.++....-....+..+..++.+++.-+.+..+ ... -..+.+..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 665443 11111112456666666653333222222444566666666654432110 000 00111111
Q ss_pred CcEEEecCCCCCccccc-cc-cccceE---EeccCCCcc----EEeccCCccceeeecccccc----eEeecCCCCceEE
Q 011021 311 LEDLFVTRCCLPGKIKI-SS-NQLKNL---LFRSCKYLK----VIDVDAPNLLLFTYEFNPIP----IISINVPCPWKVS 377 (495)
Q Consensus 311 L~~L~L~~~~~~~~i~~-~~-~~L~~L---~l~~c~~l~----~l~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~ 377 (495)
.....+.... ...+.. .+ ..++.+ ....|.-.. .-.-..|+|+.++++++++. -.+..++.+++|.
T Consensus 226 ~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 1111111100 000000 00 001111 001110000 00123677888888888754 3566788999999
Q ss_pred EEEecccchhhhcch-HHHhccCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC--CCccHHHHHHHH
Q 011021 378 FVCKGVLNTHWYLKL-KKFLGVSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV--PLSDYETLLDCV 453 (495)
Q Consensus 378 i~~~~~~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~--~~~~~~~l~~~l 453 (495)
+..+. ++.+ ...++++..|+.|++ +.+... +.|..|... .+|..|.+-.|| ..-.+.++.+.|
T Consensus 305 L~~N~------l~~v~~~~f~~ls~L~tL~L--~~N~it~~~~~aF~~~-----~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 305 LTRNK------LEFVSSGMFQGLSGLKTLSL--YDNQITTVAPGAFQTL-----FSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred cCcch------HHHHHHHhhhccccceeeee--cCCeeEEEeccccccc-----ceeeeeehccCcccCccchHHHHHHH
Confidence 94332 3333 456789999995544 555544 568888777 889999999998 333455665655
Q ss_pred hh
Q 011021 454 FW 455 (495)
Q Consensus 454 ~~ 455 (495)
..
T Consensus 372 r~ 373 (498)
T KOG4237|consen 372 RK 373 (498)
T ss_pred hh
Confidence 43
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.84 E-value=5.2e-06 Score=72.43 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=36.8
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCC--cc-eeecCCCCccEE
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL--KH-LCVSKASKLKIM 243 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l--~~-~~i~~l~~L~~L 243 (495)
.+.+|+.|++++|.+....+...++.|+.|++++|.++.-. +.+..+||+|++|.+.+|..- .. ..+..+|+|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 36789999999999887667788999999999999994311 223357999999999988642 22 233467888888
Q ss_pred Eecccc
Q 011021 244 EIRSFS 249 (495)
Q Consensus 244 ~i~~c~ 249 (495)
++.+++
T Consensus 119 ~L~~NP 124 (175)
T PF14580_consen 119 SLEGNP 124 (175)
T ss_dssp E-TT-G
T ss_pred eccCCc
Confidence 888776
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.81 E-value=3.2e-07 Score=77.25 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=34.3
Q ss_pred cccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEec
Q 011021 165 IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 226 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c 226 (495)
++...+++.|.|+++.++..+ ....+.+|+.|++.+++++ .++.-++..|.|+.|++.-+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchh
Confidence 455566666666666654433 5556666666666666652 23333555666666665544
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.80 E-value=2.8e-06 Score=87.96 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=102.8
Q ss_pred cCceEeEEEeecCCC-cccccCcccccCCcceEEEEecc-ccCC-C-----CCccCCCCCcEEEeeeEe-eChHHHHHHH
Q 011021 142 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWC-RLEQ-P-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA 212 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~c-~l~~-~-----~~~~~l~~L~~L~L~~~~-~~~~~l~~l~ 212 (495)
+.++++. +..+.. ....+-.....++.|+.|++++| .... . .....+++|+.|+++++. +++..+..+.
T Consensus 188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5566666 432211 11113344566899999999873 2211 1 134567999999999988 6888888888
Q ss_pred hcCCCccEEEEEecCCCcceeec----CCCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCCCceeEEeecCC
Q 011021 213 SECPLLEDLCFSNCWGLKHLCVS----KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSP 284 (495)
Q Consensus 213 ~~~p~Le~L~L~~c~~l~~~~i~----~l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 284 (495)
..||.||+|.+..|..++...+. +|++|++|++..|. .++..+...+|+|+.|.+.... .|+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence 88999999998888865543332 57889999999887 1233333457777776655111 155
Q ss_pred CccEEEeeccccC--hHHHHHHhhcCCCCcEEEecCCC
Q 011021 285 HLKKLDLVSVYFA--DNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 285 ~L~~L~l~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
.++.+.+.+.... +.........+++++.+.+..|.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 5555555443322 12333334566666666666653
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.74 E-value=3.1e-07 Score=77.33 Aligned_cols=67 Identities=19% Similarity=0.141 Sum_probs=40.8
Q ss_pred cccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
..+|+.+....+|++|++.++.++..+ ....+|.|+.|++.-+.. ..++.-+..+|.||.|++.++.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccc
Confidence 445666666677777777777665544 556677777777665554 1122334566777777776664
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=0.00013 Score=79.63 Aligned_cols=159 Identities=20% Similarity=0.184 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEee-ChHHH
Q 011021 130 PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMV 208 (495)
Q Consensus 130 ~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l 208 (495)
..+.-|++.....+-+. . +.....+....|... +....+...+.++.+........++.|++|-+.++.. -....
T Consensus 488 Re~al~ias~~~~~~e~-~--iv~~~~~~~~~~~~~-~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 488 REMALWIASDFGKQEEN-Q--IVSDGVGLSEIPQVK-SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred HHHHHHHhccccccccc-e--EEECCcCcccccccc-chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcC
Confidence 35666666544433333 2 222112223333322 2244555555555443333444555666666666541 01111
Q ss_pred HHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccccceEEEE---eCCcceEEEEeecCCCCceeEEeecC
Q 011021 209 QKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARS 283 (495)
Q Consensus 209 ~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~ 283 (495)
...+...|.|+.|++++|..++.++ ++.+-+||.|++.++. +..+.. ....|.+|++...+.....+.....+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC--ccccchHHHHHHhhheeccccccccccccchhhhc
Confidence 1224456667777777666555432 3345566666666553 222221 22344555554322211112222235
Q ss_pred CCccEEEeecc
Q 011021 284 PHLKKLDLVSV 294 (495)
Q Consensus 284 ~~L~~L~l~~~ 294 (495)
++|+.|.+.+.
T Consensus 642 ~~Lr~L~l~~s 652 (889)
T KOG4658|consen 642 QSLRVLRLPRS 652 (889)
T ss_pred ccccEEEeecc
Confidence 56666655443
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=9.1e-06 Score=84.11 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=66.2
Q ss_pred CCcceEEEEecccc-CCC---CCccCCCCCcEEEeeeE-ee---ChHHHHHHHhcCCCccEEEEEecCCCcceeec----
Q 011021 168 ANSVTNLRLVWCRL-EQP---FDSIMLCSLKKLTLERV-CL---DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS---- 235 (495)
Q Consensus 168 ~~~L~~L~L~~c~l-~~~---~~~~~l~~L~~L~L~~~-~~---~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~---- 235 (495)
++.|+.|.+.+|.- ... +....+++|+.|+++++ .. .......+...|+.|+.|++.+|..+++..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777777642 221 13456677777777652 11 22223335566777777777777654443332
Q ss_pred CCCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCC--CceeEEeecCCCccEEEee
Q 011021 236 KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLV 292 (495)
Q Consensus 236 ~l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~ 292 (495)
.|++|+.|.+.+|. .++..+.-.+|+|++|+++++... ........+|++++.|.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 36677777766665 122333345677777777743331 1111112346666665543
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00011 Score=67.71 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=99.7
Q ss_pred ccCCcceEEEEeccccCCCC----CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCc---ceeecCC
Q 011021 166 FSANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK---HLCVSKA 237 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~---~~~i~~l 237 (495)
+....+..|.+.+|.+.... ....+..++.|+|.+|.+ +...+..++.+.|.|+.|+|++|..-. ..+. ..
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~ 120 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PL 120 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cc
Confidence 33445667778888876654 234678999999999999 677888999999999999999987532 3321 24
Q ss_pred CCccEEEecccc---ccceEEEEeCCcceEEEEeecCCC-----CceeEEeecCCCccEEEeeccccC-hHHHHHHhhcC
Q 011021 238 SKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGAR-----RPRVVEVARSPHLKKLDLVSVYFA-DNEFNHLISKF 308 (495)
Q Consensus 238 ~~L~~L~i~~c~---~~l~~~~~~~p~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~ 308 (495)
.+|+.|.+.+.. .......-..|.++.|.++.+... ...... --+.+++|+..+|... +.....+...|
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 699999998775 222333335677777776643221 111111 1235666666655432 22334556679
Q ss_pred CCCcEEEecCCC
Q 011021 309 PSLEDLFVTRCC 320 (495)
Q Consensus 309 ~~L~~L~L~~~~ 320 (495)
||+..+.++.|+
T Consensus 199 pnv~sv~v~e~P 210 (418)
T KOG2982|consen 199 PNVNSVFVCEGP 210 (418)
T ss_pred ccchheeeecCc
Confidence 999999999884
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.37 E-value=1.6e-05 Score=73.03 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEE
Q 011021 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL 267 (495)
Q Consensus 189 ~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l 267 (495)
.+..|+.++|++|.++. ++.-..-.|.++.|++++|.....-.+..+++|+.|+++++. ..+..+....-|+++|.+
T Consensus 282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 35678888888887722 223344578888888888865433334457788888888765 333333445556777777
Q ss_pred eecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
..+.. .....++++=+|..|++++|++....-.+-+.++|.|+.|.+.+++
T Consensus 360 a~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 62221 2222344555677777777777653333335677778887777764
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.36 E-value=3.5e-05 Score=70.90 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHhcCCCccEEEEEecCCC-cc---------eeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021 208 VQKLASECPLLEDLCFSNCWGL-KH---------LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (495)
Q Consensus 208 l~~l~~~~p~Le~L~L~~c~~l-~~---------~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~ 268 (495)
+..++.-|..|..|.+++..+- +. ..++-+.+|+.+.++.|. ..+..+...-|.|+++...
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVH 245 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeee
Confidence 4445555666666666654331 10 111224566667776666 4455555556666666655
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=3e-05 Score=79.41 Aligned_cols=203 Identities=17% Similarity=0.126 Sum_probs=111.8
Q ss_pred cCCcccceEEEEEeccCCCCCh--hHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC
Q 011021 108 KLKFCIQKFRLFLTFLDVKGSA--PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF 185 (495)
Q Consensus 108 ~~~~~l~~l~l~~~~~~~~~~~--~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~ 185 (495)
..+.+++.|+....... +.. ..+.+.++.. .+.+.+.+ ++.....+.. |-.++..++|++|.|++|.+...-
T Consensus 52 ~~g~~~~~f~a~~s~~a--ds~vl~qLq~i~d~l--qkt~~lkl-~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~ 125 (1096)
T KOG1859|consen 52 LSGAPVDYFRAYVSDNA--DSRVLEQLQRILDFL--QKTKVLKL-LPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAK 125 (1096)
T ss_pred cCCCCCceeEEecCCcc--cchHHHHHHHHHHHH--hhheeeee-cccCCCCCCC-CceeccccceeeEEecCcchhhhh
Confidence 35678888887765321 111 1222222222 34555552 2322223333 888899999999999999754311
Q ss_pred Cc---------------------------------cCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce
Q 011021 186 DS---------------------------------IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL 232 (495)
Q Consensus 186 ~~---------------------------------~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~ 232 (495)
+. .....|.+-+.++|.+ ..++.-+.-.|.||.|+|++|...+.-
T Consensus 126 GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~ 203 (1096)
T KOG1859|consen 126 GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVD 203 (1096)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhH
Confidence 10 0112334444444444 112222334577888888888654444
Q ss_pred eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 233 CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
.+..|+.|++|+++.+. ..+..+....-.|+.|.++++.. .....+.++.+|+.|++++|-+.+..-...+..+..|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l--~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL--TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecccHH--HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 55567888888887654 22333333333478888873322 2233445677888888888776653322333445667
Q ss_pred cEEEecCCC
Q 011021 312 EDLFVTRCC 320 (495)
Q Consensus 312 ~~L~L~~~~ 320 (495)
+.|.|.+|+
T Consensus 282 ~~L~LeGNP 290 (1096)
T KOG1859|consen 282 IVLWLEGNP 290 (1096)
T ss_pred HHHhhcCCc
Confidence 777777763
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.23 E-value=6.5e-05 Score=53.41 Aligned_cols=58 Identities=24% Similarity=0.115 Sum_probs=35.0
Q ss_pred CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
++|++|++++|.+...+ .+.++++|++|+++++.+..- -...+.++|+|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 35677777777655433 455677777777777766211 11235567777777776653
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00043 Score=63.86 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=120.4
Q ss_pred cCceEeEEEeecCCCc-ccccCcccccCCcceEEEEeccccCCCC-Cc-cCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWCRLEQPF-DS-IMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~-~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
..+++++ +..+... -.++-..+-+.|.|+.|+|+.|.+..+. .. ....+|++|.|.+...+.......+...|.+
T Consensus 71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4678888 4322111 1222333345799999999999887654 11 3567999999999998777788889999999
Q ss_pred cEEEEEecCC----CcceeecC-CCCccEEEecccc----ccceEEEEeCCcceEEEEeecCC-CCceeEEeecCCCccE
Q 011021 219 EDLCFSNCWG----LKHLCVSK-ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK 288 (495)
Q Consensus 219 e~L~L~~c~~----l~~~~i~~-l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~ 288 (495)
++|+++.|.. +..-.+.. -+.++.|....|. .....+.--.|++..+-+..+.. ..........+|.+-.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999998832 22222211 2577888888776 12233334578888888874432 1222233445777778
Q ss_pred EEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021 289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 325 (495)
Q Consensus 289 L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i 325 (495)
|.+..+++..-.-..-+.+||.|..|.+.+++..+.+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 8888888765333334578999999999998766554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.10 E-value=8.9e-05 Score=80.95 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=40.2
Q ss_pred CCcceEEEEeccc-cCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce-eec-CCCCccEE
Q 011021 168 ANSVTNLRLVWCR-LEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVS-KASKLKIM 243 (495)
Q Consensus 168 ~~~L~~L~L~~c~-l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~-~i~-~l~~L~~L 243 (495)
.+.|++|+|++|. +...| ..+.+-+||+|+|+++.+. .++.-+.++..|.+|++..+..+... .+. .+++|+.|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 4666666666653 22222 4455666666666666552 23333445556666666655443322 111 24556666
Q ss_pred Eecc
Q 011021 244 EIRS 247 (495)
Q Consensus 244 ~i~~ 247 (495)
.+..
T Consensus 648 ~l~~ 651 (889)
T KOG4658|consen 648 RLPR 651 (889)
T ss_pred Eeec
Confidence 5543
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.09 E-value=0.00062 Score=67.03 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=33.6
Q ss_pred cCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEecc-CCccceeeecccc-cceEeecCCCCceEEEE
Q 011021 307 KFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP-IPIISINVPCPWKVSFV 379 (495)
Q Consensus 307 ~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~-~~~~~~~~~~L~~l~i~ 379 (495)
.+++++.|++++| .+..++.-.++|+.|.+.+|.++..+.-. .++|++|.+.++. ++. -+++|+.|++.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeC
Confidence 3455666666655 44444433335666666666555444322 2355555555542 210 12356666653
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.98 E-value=0.0014 Score=64.52 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=12.7
Q ss_pred CCCcEEEecCCCCCccccccccccceEEe
Q 011021 309 PSLEDLFVTRCCLPGKIKISSNQLKNLLF 337 (495)
Q Consensus 309 ~~L~~L~L~~~~~~~~i~~~~~~L~~L~l 337 (495)
++|+.|.+.+|..+..++ +.|+.|.+
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP---~sLe~L~L 119 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLP---ESVRSLEI 119 (426)
T ss_pred hhhhheEccCcccccccc---cccceEEe
Confidence 356666666554444332 34444544
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00021 Score=76.00 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=89.4
Q ss_pred CCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCCCccEEEeccccccceEEE--EeCCcce
Q 011021 190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQ 263 (495)
Q Consensus 190 l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~~L~~L~i~~c~~~l~~~~--~~~p~L~ 263 (495)
-.+|+.|++++... ..+....+-..+|.|+.|.+.+-..... ....++|+|.+|+|+++. +..+. -..++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN--ISNLSGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC--ccCcHHHhccccHH
Confidence 46889999988766 6666777777899999999987543222 112357899999999885 22222 1567788
Q ss_pred EEEEeecCCC-CceeEEeecCCCccEEEeeccccChH--HHH---HHhhcCCCCcEEEecCCCCCc----cccccccccc
Q 011021 264 QLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFADN--EFN---HLISKFPSLEDLFVTRCCLPG----KIKISSNQLK 333 (495)
Q Consensus 264 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~---~l~~~~~~L~~L~L~~~~~~~----~i~~~~~~L~ 333 (495)
.|.+.+-... ......+-.+.+|+.||++....... ... +....+|+|+.|+.++...-+ .+..+.|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 7777632221 12233445688888888886654331 122 223357888888888763322 2233455666
Q ss_pred eEE
Q 011021 334 NLL 336 (495)
Q Consensus 334 ~L~ 336 (495)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.46 E-value=0.002 Score=58.88 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=49.1
Q ss_pred HHHHHHHHHH-HcCceEeEEEeecCCCc---ccccCcccccCCcceEEEEeccccCC-------C-----CCccCCCCCc
Q 011021 131 IVDRWIRLAV-ENGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQ-------P-----FDSIMLCSLK 194 (495)
Q Consensus 131 ~~~~wi~~a~-~~~l~~L~l~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~c~l~~-------~-----~~~~~l~~L~ 194 (495)
++...+.... ...+.+++ +..+..+ ...+...+.+-++|+..+++...... . +....||.|+
T Consensus 18 Dvk~v~eel~~~d~~~evd--LSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 18 DVKGVVEELEMMDELVEVD--LSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred hhhHHHHHHHhhcceeEEe--ccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 4444444432 35677777 4432211 11223333334666666666532100 0 0234677777
Q ss_pred EEEeeeEee---ChHHHHHHHhcCCCccEEEEEecC
Q 011021 195 KLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 195 ~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
+.+|+.|.+ ..+.+..+++....|+.|.+.+|.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 777777766 234455566677777777776663
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.42 E-value=8.6e-05 Score=70.94 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCcccccCccccc-CCcceEEEEeccccCCCC--CccCCCCCcEEEeee-Eee
Q 011021 155 ENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL 203 (495)
Q Consensus 155 ~~~~~~lp~~l~~-~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~-~~~ 203 (495)
......+|+..|+ .++|+.|+|++|.++.-. .+.++++|.+|.+.+ +.+
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3456788887776 699999999999875432 677899999998887 666
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.29 E-value=0.0022 Score=64.57 Aligned_cols=145 Identities=19% Similarity=0.144 Sum_probs=77.3
Q ss_pred CCcceEEEEeccccCCCCCcc-CC-CCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec-CCCCccEEE
Q 011021 168 ANSVTNLRLVWCRLEQPFDSI-ML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIME 244 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~~~~-~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~-~l~~L~~L~ 244 (495)
.+.++.|++.++.+...+... .+ ++|+.|+++++.+.. +..-+..+|.|+.|.+.+|......... ..+.|+.|.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 356777777776655444333 33 277777777776632 2123556777777777777643322222 456777777
Q ss_pred eccccccceEEEE---eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 245 IRSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 245 i~~c~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
++++. +..+.. ....|+++.++.+. ....+..+..+.++..+.+.++.+.+. .......++++.|++.++
T Consensus 193 ls~N~--i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 193 LSGNK--ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN 265 (394)
T ss_pred ccCCc--cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec--cchhccccccceeccccc
Confidence 77663 333332 22236666666331 112233344555555555555554431 223345566777766655
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.20 E-value=0.00071 Score=48.00 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=20.2
Q ss_pred eecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+.++++|+.|+++++.++.- ..+.+.++++|+.|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 34556666666665555431 1122345566666666654
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.17 E-value=0.00054 Score=62.29 Aligned_cols=83 Identities=22% Similarity=0.118 Sum_probs=61.8
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCC--cce-eecCCCCccE
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL--KHL-CVSKASKLKI 242 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l--~~~-~i~~l~~L~~ 242 (495)
....|+.|++.++.+++...+..+|+||+|.++.+.+ ....+.-++..||+|.+|++++|..- .++ ....+++|.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3567888888888877655677889999999999955 33445566778899999999999752 222 2235678888
Q ss_pred EEecccc
Q 011021 243 MEIRSFS 249 (495)
Q Consensus 243 L~i~~c~ 249 (495)
|++.+|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 8888886
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0004 Score=63.49 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=67.9
Q ss_pred CCCccEEEeccccccceEEEE--eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021 237 ASKLKIMEIRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (495)
Q Consensus 237 l~~L~~L~i~~c~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 314 (495)
+.+.++|+.++| ++..+.+ ..|.||.|.++-+.. .....+..|.+|++|+|..|.+.+-.-...+.++|+|++|
T Consensus 18 l~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC--CccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 346677777777 4554443 688999999984443 2344566899999999998888774434457899999999
Q ss_pred EecCCCCCccccc--------cccccceEE
Q 011021 315 FVTRCCLPGKIKI--------SSNQLKNLL 336 (495)
Q Consensus 315 ~L~~~~~~~~i~~--------~~~~L~~L~ 336 (495)
.|..|+..+.-+. ..|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999876654322 357777773
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.04 E-value=0.003 Score=63.59 Aligned_cols=168 Identities=21% Similarity=0.167 Sum_probs=112.5
Q ss_pred CceEeEEEeecCCCcccccCcccccCC-cceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 143 GVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
.+..+. + .......+|......+ +|+.|+++++.+...+ ....+++|+.|+++.+.+.+ +.......+.|+.
T Consensus 117 ~l~~L~--l--~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLD--L--DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNN 190 (394)
T ss_pred ceeEEe--c--CCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhh
Confidence 455555 3 2345677888777774 9999999999887653 57899999999999998843 4444447899999
Q ss_pred EEEEecCCCcceeec--CCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021 221 LCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (495)
Q Consensus 221 L~L~~c~~l~~~~i~--~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (495)
|.++++.. ..++.. ....|.+|.+.++. .......-...++..+.+..+.. ...+..++.+++++.|+++++.++
T Consensus 191 L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccc
Confidence 99999864 322222 33458899888773 11111112345555555441111 111345567888999999999887
Q ss_pred hHHHHHHhhcCCCCcEEEecCCCC
Q 011021 298 DNEFNHLISKFPSLEDLFVTRCCL 321 (495)
Q Consensus 298 ~~~~~~l~~~~~~L~~L~L~~~~~ 321 (495)
+... .....+++.|+++++..
T Consensus 269 ~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 269 SISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc---ccccCccCEEeccCccc
Confidence 6322 56778999999988643
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.99 E-value=0.0044 Score=40.50 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=13.8
Q ss_pred cceEEEEeccccCCCCC-ccCCCCCcEEEeeeEee
Q 011021 170 SVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL 203 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~~-~~~l~~L~~L~L~~~~~ 203 (495)
+|++|++++|.+...+. ..+|++|+.|+++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 34455555544443222 34444444444444433
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.0018 Score=56.62 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=67.2
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCCCcceee
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCV 234 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i 234 (495)
.+.+|..-..--.++.++-+++.+...+ ...+++.++.|.+.+|.. ++..++.+-.-.|+||.|+|++|+.+++-.+
T Consensus 90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 3466655444456778887777654333 567889999999999976 8888998888899999999999998776443
Q ss_pred ---cCCCCccEEEeccc
Q 011021 235 ---SKASKLKIMEIRSF 248 (495)
Q Consensus 235 ---~~l~~L~~L~i~~c 248 (495)
..+++|+.|.+.+-
T Consensus 170 ~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHhhhhHHHHhcCc
Confidence 35677877777643
No 58
>PLN03150 hypothetical protein; Provisional
Probab=95.72 E-value=0.0095 Score=63.55 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=60.0
Q ss_pred CccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEe
Q 011021 239 KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316 (495)
Q Consensus 239 ~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L 316 (495)
.++.|++.++. . .+......+++|+.|+++.+...+..+..++.+++|+.|++++|.+++..... +.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36777777765 1 11111125678899998866555556666778899999999998887654433 467889999999
Q ss_pred cCCCCCccccc
Q 011021 317 TRCCLPGKIKI 327 (495)
Q Consensus 317 ~~~~~~~~i~~ 327 (495)
++|...+.++.
T Consensus 498 s~N~l~g~iP~ 508 (623)
T PLN03150 498 NGNSLSGRVPA 508 (623)
T ss_pred cCCcccccCCh
Confidence 98865555543
No 59
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=95.72 E-value=0.016 Score=32.96 Aligned_cols=25 Identities=48% Similarity=0.832 Sum_probs=22.3
Q ss_pred CCcEEEeeeEee-ChHHHHHHHhcCC
Q 011021 192 SLKKLTLERVCL-DEQMVQKLASECP 216 (495)
Q Consensus 192 ~L~~L~L~~~~~-~~~~l~~l~~~~p 216 (495)
+||+|+|..+.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5568999999998
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.003 Score=57.52 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=37.2
Q ss_pred CCCccEEEecccc----ccceEEEEeCCcceEEEEeecCCC-CceeEEeecCCCccEEEeeccccCh--HHHHHHhhcCC
Q 011021 237 ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFP 309 (495)
Q Consensus 237 l~~L~~L~i~~c~----~~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~ 309 (495)
+|+|+.|.++.+. .++......+|+|+.+.++.++.. ......+..+++|+.|++..+..+. +--..++.-+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 4566666665552 223333334566666666633321 1111223345566666666555332 10112223345
Q ss_pred CCcEEEecCC
Q 011021 310 SLEDLFVTRC 319 (495)
Q Consensus 310 ~L~~L~L~~~ 319 (495)
.|+.|+=..+
T Consensus 144 ~L~~LD~~dv 153 (260)
T KOG2739|consen 144 SLKYLDGCDV 153 (260)
T ss_pred hhcccccccc
Confidence 5555554443
No 61
>PLN03150 hypothetical protein; Provisional
Probab=95.29 E-value=0.015 Score=61.97 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=60.6
Q ss_pred cceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEEe
Q 011021 170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEI 245 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~i 245 (495)
.++.|+|+++.+.... ....+++|+.|+|++|.+.+ .++..+..++.|+.|+|++|...+.+ .+.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3788999998875433 56789999999999998843 23444788999999999999754433 3457899999999
Q ss_pred cccc
Q 011021 246 RSFS 249 (495)
Q Consensus 246 ~~c~ 249 (495)
.+|.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 9875
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.27 E-value=0.025 Score=49.71 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=35.5
Q ss_pred CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCC
Q 011021 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG 228 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~ 228 (495)
.+.|..|.|.+|+++... ....+|+|+.|.|.+|++ .-+.++. +..||.|++|.+-+++.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 466777777776654322 223566777777777766 2233333 34677777777776653
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.60 E-value=0.069 Score=46.99 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=52.4
Q ss_pred CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeC--hHHHHHHHhcCCCccEEEEEecCCC--cc-eeecCCCCccEE
Q 011021 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGL--KH-LCVSKASKLKIM 243 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~l~~~~p~Le~L~L~~c~~l--~~-~~i~~l~~L~~L 243 (495)
.....++|+++.+.....+..++.|.+|.|.+|.++ +..+. ...|+|..|.+.+|... ++ ....+||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 455677888887665556778899999999999883 22333 35688899999887542 22 123356677776
Q ss_pred Eecccc
Q 011021 244 EIRSFS 249 (495)
Q Consensus 244 ~i~~c~ 249 (495)
.+-++.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 666554
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.21 E-value=0.014 Score=54.74 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=36.7
Q ss_pred ccCCCcCCCCC----hHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021 14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 14 ~~~~d~is~LP----d~vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
+-..|.|+.|| |++-..|||+|+..+++.+-.|||+|+++
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 34579999999 99999999999999999999999999963
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.16 E-value=0.059 Score=35.14 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
++|++|+++++.+++ +...+.++++|+.|++++|
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 468888888888876 3333578888888888887
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.73 E-value=0.13 Score=47.35 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=29.2
Q ss_pred CccceeEEEecCCCccHHHHHHHHhhhcc-CCeeEEeeccccchhHHHH
Q 011021 430 LQVENLELHTNVPLSDYETLLDCVFWICH-PRTLRVNVMFEEDHKFITV 477 (495)
Q Consensus 430 ~~L~~L~l~~~~~~~~~~~l~~~l~~~~~-l~~l~i~~~~~~~~~~~~~ 477 (495)
.+|+.|+|..|.........+..++..++ |.-|.+++|-++..+--++
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 66777777777654444455555555554 4777888885555554433
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.40 E-value=0.0019 Score=64.87 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=73.9
Q ss_pred ccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc-eeecCCC
Q 011021 160 TLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKAS 238 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~-~~i~~l~ 238 (495)
.+|..+.+...|++|+|+.+.+...+....+--|+.|-++++.++.- +.-+...+.|..|+.+.|....- -.+.++.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 34445555555555555555544433222223355555555554211 11122344555555555542211 1122345
Q ss_pred CccEEEeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHH-HhhcCCCCcEEE
Q 011021 239 KLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNH-LISKFPSLEDLF 315 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~ 315 (495)
+|+.|.+..+. +..+. +..-.|.+|+++ |......++.+.++..|+.|.|.+|.+.....+- .-+...=.|.|.
T Consensus 190 slr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 190 SLRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred HHHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence 55555555543 11111 113357777777 4444556777777888888888877765421110 011233345566
Q ss_pred ecCC
Q 011021 316 VTRC 319 (495)
Q Consensus 316 L~~~ 319 (495)
+.-|
T Consensus 267 ~qA~ 270 (722)
T KOG0532|consen 267 TQAC 270 (722)
T ss_pred chhc
Confidence 6655
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.29 E-value=0.0095 Score=60.40 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=41.6
Q ss_pred cccCCcceEEEEeccccCCCCC-ccCCCCCcEEEeeeEeeC-hHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 242 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~-~~~l~~L~~L~L~~~~~~-~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~ 242 (495)
+...++|..|++.++.+..... ...+++|++|+++++.++ -.. +..++.|+.|++.+|..-..-....+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhhc
Confidence 3445666666666666554443 455666666666666662 122 2234446666666665432222222444555
Q ss_pred EEeccc
Q 011021 243 MEIRSF 248 (495)
Q Consensus 243 L~i~~c 248 (495)
+++.++
T Consensus 167 l~l~~n 172 (414)
T KOG0531|consen 167 LDLSYN 172 (414)
T ss_pred ccCCcc
Confidence 555444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=0.017 Score=53.18 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=57.2
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc-------eeecCCCC
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-------LCVSKASK 239 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~-------~~i~~l~~ 239 (495)
..+.|++|.|+-|.+.....+..|.+|+.|+|..|.+.+-.--..+.+.|+|+.|.|..|+-.+. ..+.-+|+
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPn 118 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPN 118 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHccc
Confidence 35778999999888876656788999999999999883322223467999999999998764322 22334788
Q ss_pred ccEEEe
Q 011021 240 LKIMEI 245 (495)
Q Consensus 240 L~~L~i 245 (495)
|++|+=
T Consensus 119 LkKLDn 124 (388)
T KOG2123|consen 119 LKKLDN 124 (388)
T ss_pred chhccC
Confidence 888853
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.50 E-value=0.028 Score=56.98 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=42.0
Q ss_pred cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI 242 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~ 242 (495)
+..+++|++|+++++.+....+...++.|+.|++++|.+.. +.. +..++.|+.+++.+|.....-. ...+.+|+.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~--~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD--ISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchh--ccC-CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 34456666666666665544445555556666666666521 111 2225566666666665432222 234455555
Q ss_pred EEeccc
Q 011021 243 MEIRSF 248 (495)
Q Consensus 243 L~i~~c 248 (495)
+.+.++
T Consensus 191 l~l~~n 196 (414)
T KOG0531|consen 191 LDLGGN 196 (414)
T ss_pred HhccCC
Confidence 555554
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.32 E-value=0.012 Score=59.36 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=30.2
Q ss_pred cccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
..+|..++.++ |+.|-+++++++..+ ..+..+.|..|+.+.|.+ ..+..-+.+...|+.|+++.+.
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhh
Confidence 34444444443 555555555544333 333455555555555544 1222223344445555555544
No 72
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.30 E-value=0.12 Score=50.51 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.5
Q ss_pred cCCCCChHHHHHHhcCCC-hhHHHhhhcccccchhhhcc
Q 011021 19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS 56 (495)
Q Consensus 19 ~is~LPd~vL~~Ils~L~-~~d~~rts~lSkrWr~lw~~ 56 (495)
..++||+|+|..|..+|+ .-|.+|.+.|||.||..-..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 367899999999999997 77999999999999986443
No 73
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.91 E-value=0.11 Score=48.54 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=30.4
Q ss_pred CcCCCCChHHHHHHhc-----CCChhHHHhhhcccccchh
Q 011021 18 DRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ 52 (495)
Q Consensus 18 d~is~LPd~vL~~Ils-----~L~~~d~~rts~lSkrWr~ 52 (495)
+.|+.||||||..||. .++.++..++|.|||.|+-
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 4578899999999986 4567999999999999984
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=0.12 Score=45.54 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=35.0
Q ss_pred ecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEecCCCCCccccc----cccccceEEeccCC
Q 011021 281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCK 341 (495)
Q Consensus 281 ~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~ 341 (495)
..++.++.|.+..+. +.+..+..+....|+|+.|+|++|+.++.-.. .+++|+.|.+...+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 345566666666555 33444555555667777777777766654432 24555555554443
No 75
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.30 E-value=0.04 Score=57.44 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=5.2
Q ss_pred CCCcEEEeeeEee
Q 011021 191 CSLKKLTLERVCL 203 (495)
Q Consensus 191 ~~L~~L~L~~~~~ 203 (495)
|.|+.|+|++|++
T Consensus 187 ~ale~LnLshNk~ 199 (1096)
T KOG1859|consen 187 PALESLNLSHNKF 199 (1096)
T ss_pred HHhhhhccchhhh
Confidence 3344444444433
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.74 E-value=0.66 Score=25.53 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=12.9
Q ss_pred CCCCcEEEeeeEeeChHHHHHH
Q 011021 190 LCSLKKLTLERVCLDEQMVQKL 211 (495)
Q Consensus 190 l~~L~~L~L~~~~~~~~~l~~l 211 (495)
+++|++|+|++|.++++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3677777777777766665543
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.94 E-value=0.58 Score=48.73 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=37.1
Q ss_pred ccCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021 14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 14 ~~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
....|.|+.||-|+..+||++|+.++.++++.+|+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 4567999999999999999999999999999999999864
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.20 E-value=1.1 Score=25.25 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=8.9
Q ss_pred CCCcEEEeeeEee-ChHHHHH
Q 011021 191 CSLKKLTLERVCL-DEQMVQK 210 (495)
Q Consensus 191 ~~L~~L~L~~~~~-~~~~l~~ 210 (495)
|+|+.|+|++|.. ++.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 4444444444432 4444443
No 79
>PF13013 F-box-like_2: F-box-like domain
Probab=77.44 E-value=1.3 Score=35.17 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred cCCCCChHHHHHHhcCCChhHHHhhhcccc
Q 011021 19 RISELPTFIIHHLMSYLSAKEVARTSVLSK 48 (495)
Q Consensus 19 ~is~LPd~vL~~Ils~L~~~d~~rts~lSk 48 (495)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988877776
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.05 E-value=1.5 Score=21.94 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=6.2
Q ss_pred cceEEEEeccccC
Q 011021 170 SVTNLRLVWCRLE 182 (495)
Q Consensus 170 ~L~~L~L~~c~l~ 182 (495)
+|+.|++++|.+.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4666666666543
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.03 E-value=0.57 Score=38.43 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCcceEEEEeccccCCC--CCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEe
Q 011021 168 ANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSN 225 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~ 225 (495)
|.+|+.+.+... +..- ..+.++++|+.+.+... +. ..-...+.+|+.|+++.+..
T Consensus 11 ~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 11 CSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCEEEECCC-eeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc
Confidence 557777776542 2111 13455666776666543 20 00012245666677766643
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=73.73 E-value=0.56 Score=38.46 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=3.9
Q ss_pred CCCccEEEe
Q 011021 283 SPHLKKLDL 291 (495)
Q Consensus 283 ~~~L~~L~l 291 (495)
+++|+.+.+
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 444444444
No 83
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=73.41 E-value=2.8 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=29.3
Q ss_pred CCCCceEEEE-EecccchhhhcchHHHhccCCccceEEEE
Q 011021 370 VPCPWKVSFV-CKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 370 ~~~L~~l~i~-~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
.++|+.+.+. ..+...+ +..+.++++|.+.|++++|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e--~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENE--LEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHH--HHHHHHHHhhhhhhcEEEEE
Confidence 4689999986 4455555 78889999999999988874
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=73.05 E-value=0.69 Score=38.34 Aligned_cols=63 Identities=13% Similarity=-0.011 Sum_probs=41.5
Q ss_pred ccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCc
Q 011021 166 FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK 230 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~ 230 (495)
.....|...+|++|.+...+ ....||.++.|+|+++.+.+-..+ +...|.|+.|+++.|+...
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcccc
Confidence 33456666777777766544 345677888888888877432222 6678888888888876533
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.91 E-value=5 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=15.1
Q ss_pred CCCcEEEeeeEeeChHHHHHH
Q 011021 191 CSLKKLTLERVCLDEQMVQKL 211 (495)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~l 211 (495)
++|++|+|++|.+++++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 568888888888866665544
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.98 E-value=4 Score=21.87 Aligned_cols=9 Identities=33% Similarity=0.180 Sum_probs=4.1
Q ss_pred CcEEEecCC
Q 011021 311 LEDLFVTRC 319 (495)
Q Consensus 311 L~~L~L~~~ 319 (495)
|+.|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.58 E-value=7 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCcCCCCChHHHHHHhcCCChhHHHh
Q 011021 17 MDRISELPTFIIHHLMSYLSAKEVAR 42 (495)
Q Consensus 17 ~d~is~LPd~vL~~Ils~L~~~d~~r 42 (495)
...++.||.|+-.+|+++|+-+|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 36789999999999999999998754
No 88
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=57.14 E-value=9.6 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.6
Q ss_pred CCCCceEEEEE-ecccchhhhcchHHHhccCCccceEEEEEEe
Q 011021 370 VPCPWKVSFVC-KGVLNTHWYLKLKKFLGVSKQIESLKLSLYS 411 (495)
Q Consensus 370 ~~~L~~l~i~~-~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 411 (495)
.++|+.+.|.. .+..++ +..+.+++++.+.|++++|....
T Consensus 4 ~~~Lk~v~i~~f~g~~~e--~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 4 LSSLEVLEIKGYRGTEEE--KELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred hheEEEEEEEeccCcHHH--HHHHHHHHhcchhheEEEEEeec
Confidence 35789998863 333344 77889999999999988886543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.70 E-value=7.3 Score=39.94 Aligned_cols=58 Identities=24% Similarity=0.115 Sum_probs=25.8
Q ss_pred CcceEEEEeccccCCCC----CccCCCCCcEEEeeeE--ee-ChHHHHHHHhcCCCccEEEEEecCC
Q 011021 169 NSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERV--CL-DEQMVQKLASECPLLEDLCFSNCWG 228 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~--~~-~~~~l~~l~~~~p~Le~L~L~~c~~ 228 (495)
+.+.+++|++|++.... .....|.|+.|+|+++ .+ ++..+.. + +.+.||+|.+.+|+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~-k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-L-KGLPLEELVLEGNPL 282 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-h-cCCCHHHeeecCCcc
Confidence 44455555555433221 2233455555555555 22 2223332 1 233355555555554
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=52.17 E-value=3.5 Score=37.92 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=41.5
Q ss_pred cCCCcCCCCChHHHHHHhcCCC-hhHHHhhhcccccc------hhhhccCceEEEecCccC
Q 011021 15 VAMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKW------NQLYVSFPILDFDQNYFF 68 (495)
Q Consensus 15 ~~~d~is~LPd~vL~~Ils~L~-~~d~~rts~lSkrW------r~lw~~~~~l~~~~~~~~ 68 (495)
..+--+.+||.+++..|+-+|+ -+|++.++.+-..- |.+|+..-.++|....+.
T Consensus 197 ~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 197 PAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred cCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3456789999999999999998 78999888763322 457887777788776653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.69 E-value=7.8 Score=39.74 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=55.6
Q ss_pred ccCCCCCcEEEeeeEee-ChHHHHHHHhcCCCccEEEEEecCC--Ccceeec--CCCCccEEEecccc--c-------cc
Q 011021 187 SIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLCVS--KASKLKIMEIRSFS--E-------EI 252 (495)
Q Consensus 187 ~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~--l~~~~i~--~l~~L~~L~i~~c~--~-------~l 252 (495)
...+|.+..++|++|++ .-+.+..+....|.|..|+|++|.. -....+. +...|++|.+.++. . .+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 45789999999999998 6667888889999999999999832 2222332 33678888888776 1 11
Q ss_pred eEEEEeCCcceEEE
Q 011021 253 EIVEISVPSLQQLT 266 (495)
Q Consensus 253 ~~~~~~~p~L~~L~ 266 (495)
..+.-..|.|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 12222457777776
No 92
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=37.86 E-value=8.9 Score=36.57 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=33.4
Q ss_pred CCCChHHHHHHhcCCChhHHHhhhcccccchhhhccCce
Q 011021 21 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI 59 (495)
Q Consensus 21 s~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~~~~ 59 (495)
..+|++++++|++|+.-++++++|.+|+|-..+-...|.
T Consensus 9 e~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 458999999999999999999999999999876444443
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=34.02 E-value=22 Score=19.61 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=8.2
Q ss_pred CCCcEEEeeeEee
Q 011021 191 CSLKKLTLERVCL 203 (495)
Q Consensus 191 ~~L~~L~L~~~~~ 203 (495)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666655
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=34.02 E-value=22 Score=19.61 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=8.2
Q ss_pred CCCcEEEeeeEee
Q 011021 191 CSLKKLTLERVCL 203 (495)
Q Consensus 191 ~~L~~L~L~~~~~ 203 (495)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666655
No 95
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=26.54 E-value=22 Score=29.75 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=12.2
Q ss_pred hcchHHHhccCCccceEEEEEEecc
Q 011021 389 YLKLKKFLGVSKQIESLKLSLYSTK 413 (495)
Q Consensus 389 ~~~l~~~l~~l~~L~~L~l~~~~~~ 413 (495)
+..+|.-+..++.|+++++..+...
T Consensus 89 isdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 89 ISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhchHHHhhhHHhhhcccccCccc
Confidence 3344444555555555555444333
No 96
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.06 E-value=15 Score=27.39 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=25.9
Q ss_pred CChHHHHHHhcCCChhHHHhhhcccc--cchhhhccC
Q 011021 23 LPTFIIHHLMSYLSAKEVARTSVLSK--KWNQLYVSF 57 (495)
Q Consensus 23 LPd~vL~~Ils~L~~~d~~rts~lSk--rWr~lw~~~ 57 (495)
+||+.=.....++-+++.+++..+-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 56666666677778889988886654 489999853
Done!