Query 011021
Match_columns 495
No_of_seqs 350 out of 2953
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 4.7E-28 1.6E-32 255.7 6.0 38 16-53 2-40 (594)
2 3ogk_B Coronatine-insensitive 99.9 1.1E-26 3.8E-31 245.1 14.8 40 16-55 5-49 (592)
3 2ast_B S-phase kinase-associat 99.8 3E-22 1E-26 195.9 3.7 255 16-340 5-282 (336)
4 4fmz_A Internalin; leucine ric 99.7 1.3E-17 4.4E-22 163.7 11.4 294 141-467 43-343 (347)
5 3rgz_A Protein brassinosteroid 99.7 7.1E-18 2.4E-22 183.0 7.5 288 166-468 197-525 (768)
6 3rgz_A Protein brassinosteroid 99.7 4.9E-18 1.7E-22 184.2 4.0 299 157-467 88-428 (768)
7 4fmz_A Internalin; leucine ric 99.7 5.3E-17 1.8E-21 159.2 10.0 272 142-441 66-344 (347)
8 2id5_A Lingo-1, leucine rich r 99.7 5.9E-17 2E-21 166.1 8.0 262 164-441 51-331 (477)
9 1o6v_A Internalin A; bacterial 99.7 7E-16 2.4E-20 157.6 15.5 291 142-467 90-385 (466)
10 1o6v_A Internalin A; bacterial 99.7 5.3E-16 1.8E-20 158.5 13.6 293 142-469 68-365 (466)
11 3ogk_B Coronatine-insensitive 99.6 2.3E-16 7.9E-21 166.1 8.1 200 110-317 111-326 (592)
12 3v47_A TOLL-like receptor 5B a 99.6 4.3E-16 1.5E-20 158.6 9.7 310 142-467 54-405 (455)
13 4eco_A Uncharacterized protein 99.6 2.5E-16 8.4E-21 167.1 7.7 284 161-467 239-597 (636)
14 4fcg_A Uncharacterized protein 99.6 3.8E-15 1.3E-19 144.8 14.5 230 136-407 75-308 (328)
15 2id5_A Lingo-1, leucine rich r 99.6 1.7E-16 5.7E-21 162.7 5.0 289 158-467 23-330 (477)
16 4ecn_A Leucine-rich repeat pro 99.6 7.7E-16 2.6E-20 166.9 10.1 301 142-467 448-837 (876)
17 3vq2_A TLR4, TOLL-like recepto 99.6 6.2E-16 2.1E-20 163.3 8.8 260 165-442 281-557 (606)
18 3o6n_A APL1; leucine-rich repe 99.6 2.7E-16 9.1E-21 156.9 5.5 269 142-442 69-351 (390)
19 2z81_A CD282 antigen, TOLL-lik 99.6 3.7E-15 1.3E-19 155.4 13.8 165 282-467 332-507 (549)
20 3o6n_A APL1; leucine-rich repe 99.6 7E-16 2.4E-20 153.8 7.7 289 142-467 45-349 (390)
21 3t6q_A CD180 antigen; protein- 99.6 7.4E-16 2.5E-20 162.7 8.2 103 350-467 448-557 (606)
22 3vq2_A TLR4, TOLL-like recepto 99.6 8.5E-16 2.9E-20 162.3 8.5 213 235-467 304-555 (606)
23 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-16 3.9E-21 163.1 1.7 338 135-479 20-420 (461)
24 2p1m_B Transport inhibitor res 99.6 6.9E-16 2.4E-20 162.5 7.4 343 110-475 104-524 (594)
25 3t6q_A CD180 antigen; protein- 99.6 2.5E-16 8.7E-21 166.3 3.7 195 260-467 278-486 (606)
26 3v47_A TOLL-like receptor 5B a 99.6 3E-16 1E-20 159.8 2.4 308 142-467 30-381 (455)
27 3oja_B Anopheles plasmodium-re 99.6 6.4E-16 2.2E-20 162.8 5.1 270 142-442 75-357 (597)
28 4ecn_A Leucine-rich repeat pro 99.6 5.4E-16 1.8E-20 168.1 3.8 173 161-341 440-655 (876)
29 2z7x_B TOLL-like receptor 1, v 99.6 2.5E-15 8.4E-20 155.7 7.8 259 142-410 45-384 (520)
30 4eco_A Uncharacterized protein 99.6 3.8E-16 1.3E-20 165.6 1.8 306 142-467 249-629 (636)
31 3oja_B Anopheles plasmodium-re 99.6 1.3E-15 4.5E-20 160.4 5.7 294 142-469 51-357 (597)
32 3g06_A SSPH2 (leucine-rich rep 99.6 4E-14 1.4E-18 148.5 15.9 268 142-454 40-308 (622)
33 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-14 3.7E-19 159.6 12.1 136 162-298 41-188 (844)
34 2z81_A CD282 antigen, TOLL-lik 99.5 5.2E-14 1.8E-18 146.7 14.7 307 142-467 26-397 (549)
35 3bz5_A Internalin-J, INLJ; leu 99.5 1.2E-14 4E-19 147.8 9.4 12 430-441 339-350 (457)
36 1z7x_W Ribonuclease inhibitor; 99.5 9.9E-16 3.4E-20 156.1 1.0 345 111-469 28-439 (461)
37 1jl5_A Outer protein YOPM; leu 99.5 3.4E-14 1.1E-18 144.3 12.3 195 169-379 131-325 (454)
38 1ziw_A TOLL-like receptor 3; i 99.5 2.1E-14 7.1E-19 153.8 8.2 294 165-467 45-391 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.5 2.8E-14 9.7E-19 144.9 8.4 239 142-408 85-347 (457)
40 1ziw_A TOLL-like receptor 3; i 99.5 2.6E-14 8.9E-19 153.0 8.2 65 395-467 555-619 (680)
41 2z7x_B TOLL-like receptor 1, v 99.5 4.2E-14 1.4E-18 146.5 9.2 132 158-296 12-150 (520)
42 2ast_B S-phase kinase-associat 99.5 7.3E-15 2.5E-19 143.2 3.3 203 133-341 37-258 (336)
43 3j0a_A TOLL-like receptor 5; m 99.5 7.2E-14 2.5E-18 153.1 11.5 155 142-299 48-219 (844)
44 2z63_A TOLL-like receptor 4, v 99.5 3.5E-15 1.2E-19 156.3 0.8 165 285-467 305-480 (570)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.3E-13 4.6E-18 144.0 11.9 143 306-467 350-507 (562)
46 2z80_A TOLL-like receptor 2, v 99.5 1.7E-13 5.7E-18 134.6 11.2 239 164-448 71-319 (353)
47 2z63_A TOLL-like receptor 4, v 99.5 6.8E-14 2.3E-18 146.5 8.9 246 162-444 275-532 (570)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.2E-13 4E-18 144.5 9.6 57 349-408 351-411 (562)
49 4fcg_A Uncharacterized protein 99.4 1.4E-13 4.9E-18 133.6 8.9 226 168-440 80-311 (328)
50 2ft3_A Biglycan; proteoglycan, 99.4 6.9E-14 2.4E-18 136.1 5.0 281 170-467 34-330 (332)
51 1xku_A Decorin; proteoglycan, 99.4 1.6E-13 5.4E-18 133.5 7.4 281 170-465 32-327 (330)
52 3o53_A Protein LRIM1, AGAP0063 99.4 6E-14 2.1E-18 135.6 3.5 225 169-407 34-269 (317)
53 1ogq_A PGIP-2, polygalacturona 99.4 2.9E-14 1E-18 137.6 1.1 61 369-441 242-302 (313)
54 3oja_A Leucine-rich immune mol 99.4 1.1E-13 3.8E-18 141.8 5.2 226 168-407 33-269 (487)
55 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-12 5.3E-17 136.4 13.1 259 169-471 40-298 (622)
56 1xku_A Decorin; proteoglycan, 99.4 2.3E-13 8E-18 132.2 6.3 266 159-441 44-330 (330)
57 2z66_A Variable lymphocyte rec 99.4 1.7E-13 5.8E-18 131.7 3.2 222 157-381 18-258 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.4 3.9E-13 1.3E-17 129.9 5.6 233 171-443 12-250 (317)
59 1jl5_A Outer protein YOPM; leu 99.3 4E-12 1.4E-16 128.9 12.2 268 142-442 131-408 (454)
60 3zyj_A Leucine-rich repeat-con 99.3 8.2E-13 2.8E-17 133.7 5.3 89 157-249 54-147 (440)
61 2ft3_A Biglycan; proteoglycan, 99.3 8.3E-13 2.8E-17 128.5 4.3 263 159-441 46-331 (332)
62 3zyi_A Leucine-rich repeat-con 99.3 2.3E-12 7.7E-17 131.0 6.1 88 158-249 66-158 (452)
63 1ogq_A PGIP-2, polygalacturona 99.3 1.2E-12 4.2E-17 126.1 3.7 215 160-379 67-299 (313)
64 2z66_A Variable lymphocyte rec 99.3 1.5E-12 5.1E-17 125.1 4.2 239 172-441 10-259 (306)
65 3oja_A Leucine-rich immune mol 99.3 2.6E-12 8.9E-17 131.6 5.5 216 188-443 31-250 (487)
66 1h6u_A Internalin H; cell adhe 99.3 8.5E-12 2.9E-16 119.9 8.3 165 141-319 40-205 (308)
67 1wwl_A Monocyte differentiatio 99.2 3.1E-13 1.1E-17 130.3 -3.1 171 168-340 42-238 (312)
68 1h6u_A Internalin H; cell adhe 99.2 2.9E-11 1E-15 116.1 9.1 187 167-363 39-229 (308)
69 2ca6_A RAN GTPase-activating p 99.2 1.2E-12 4.2E-17 130.0 -0.6 161 159-319 22-226 (386)
70 1ozn_A Reticulon 4 receptor; N 99.2 1.1E-11 3.6E-16 117.8 5.1 157 158-320 23-188 (285)
71 2z80_A TOLL-like receptor 2, v 99.1 4.2E-11 1.4E-15 117.4 7.5 214 142-362 76-312 (353)
72 3zyi_A Leucine-rich repeat-con 99.1 4.4E-11 1.5E-15 121.4 6.8 211 142-362 75-301 (452)
73 1wwl_A Monocyte differentiatio 99.1 3.3E-11 1.1E-15 116.0 5.1 153 167-341 93-264 (312)
74 4g8a_A TOLL-like receptor 4; l 99.1 4.3E-11 1.5E-15 126.6 6.3 122 143-269 53-182 (635)
75 3zyj_A Leucine-rich repeat-con 99.1 4.6E-11 1.6E-15 120.8 6.2 194 163-362 82-290 (440)
76 1ozn_A Reticulon 4 receptor; N 99.1 2.7E-11 9.3E-16 115.0 3.6 171 142-320 32-212 (285)
77 2xwt_C Thyrotropin receptor; s 99.1 6.3E-11 2.1E-15 109.3 5.7 183 169-378 31-233 (239)
78 1h6t_A Internalin B; cell adhe 99.1 9.8E-11 3.3E-15 111.5 6.5 146 165-319 64-210 (291)
79 2z62_A TOLL-like receptor 4, v 99.1 1.7E-10 5.7E-15 109.0 7.8 139 157-298 18-163 (276)
80 3rfs_A Internalin B, repeat mo 99.1 5.6E-11 1.9E-15 112.0 4.4 131 165-319 59-191 (272)
81 2o6q_A Variable lymphocyte rec 99.1 8.6E-11 2.9E-15 110.6 5.6 153 160-319 30-191 (270)
82 4glp_A Monocyte differentiatio 99.1 5.1E-11 1.7E-15 114.6 3.9 163 131-297 80-264 (310)
83 4ezg_A Putative uncharacterize 99.1 1.4E-10 4.9E-15 103.6 6.4 146 167-319 42-191 (197)
84 3rfs_A Internalin B, repeat mo 99.0 4.7E-11 1.6E-15 112.5 2.8 149 141-319 62-215 (272)
85 4glp_A Monocyte differentiatio 99.0 4.2E-11 1.4E-15 115.2 1.8 136 168-321 90-236 (310)
86 2ca6_A RAN GTPase-activating p 99.0 6.2E-11 2.1E-15 117.7 2.3 82 281-362 213-314 (386)
87 3goz_A Leucine-rich repeat-con 99.0 1.5E-10 5E-15 114.0 4.3 156 162-319 15-206 (362)
88 2xwt_C Thyrotropin receptor; s 99.0 4.2E-10 1.4E-14 103.8 7.1 190 143-341 32-237 (239)
89 2o6q_A Variable lymphocyte rec 99.0 1.5E-10 5.3E-15 108.8 4.0 171 142-320 37-216 (270)
90 1h6t_A Internalin B; cell adhe 99.0 4.1E-10 1.4E-14 107.1 7.0 166 166-341 43-211 (291)
91 4ezg_A Putative uncharacterize 99.0 2.8E-10 9.4E-15 101.7 5.3 148 142-298 44-195 (197)
92 1m9s_A Internalin B; cell inva 99.0 2.5E-10 8.4E-15 119.5 5.5 166 141-320 42-208 (605)
93 4g8a_A TOLL-like receptor 4; l 99.0 6.2E-10 2.1E-14 117.7 8.4 267 170-453 307-592 (635)
94 1p9a_G Platelet glycoprotein I 99.0 4E-10 1.4E-14 107.1 6.0 150 167-319 8-158 (290)
95 1m9s_A Internalin B; cell inva 99.0 3.8E-10 1.3E-14 118.1 5.8 166 166-341 40-208 (605)
96 3goz_A Leucine-rich repeat-con 98.9 5.4E-11 1.8E-15 117.1 -2.0 148 173-320 2-178 (362)
97 1p9a_G Platelet glycoprotein I 98.9 5.1E-10 1.8E-14 106.4 4.0 154 158-320 22-183 (290)
98 3m19_A Variable lymphocyte rec 98.9 3.4E-10 1.2E-14 105.2 2.6 157 157-319 25-189 (251)
99 2z62_A TOLL-like receptor 4, v 98.9 4.6E-10 1.6E-14 105.9 2.5 172 142-320 28-211 (276)
100 4ay9_X Follicle-stimulating ho 98.8 2E-09 7E-14 105.2 6.1 184 158-346 21-217 (350)
101 1xeu_A Internalin C; cellular 98.8 1E-09 3.5E-14 102.7 3.6 145 165-319 37-182 (263)
102 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.5E-09 8.5E-14 73.0 3.0 39 16-54 5-43 (53)
103 2o6s_A Variable lymphocyte rec 98.8 1.5E-09 5.1E-14 97.7 1.7 89 158-249 19-111 (208)
104 2ell_A Acidic leucine-rich nuc 98.7 2.6E-09 8.9E-14 92.6 1.6 128 168-320 23-158 (168)
105 1xeu_A Internalin C; cellular 98.7 1.7E-09 5.8E-14 101.2 0.4 143 168-320 18-161 (263)
106 3m19_A Variable lymphocyte rec 98.7 7.8E-09 2.7E-13 96.0 3.8 148 143-298 36-193 (251)
107 3cvr_A Invasion plasmid antige 98.7 3.3E-08 1.1E-12 102.4 8.4 136 141-297 58-193 (571)
108 2je0_A Acidic leucine-rich nuc 98.7 1.3E-09 4.3E-14 92.5 -2.1 125 168-317 16-148 (149)
109 2ell_A Acidic leucine-rich nuc 98.6 2.1E-08 7.2E-13 86.8 5.1 105 142-249 24-131 (168)
110 3e6j_A Variable lymphocyte rec 98.6 1.5E-08 5.2E-13 92.6 3.7 136 157-320 30-170 (229)
111 3e4g_A ATP synthase subunit S, 98.6 4.3E-08 1.5E-12 84.4 6.1 92 158-249 50-150 (176)
112 2je0_A Acidic leucine-rich nuc 98.6 1.9E-08 6.4E-13 85.2 3.0 105 142-249 17-124 (149)
113 2v9t_B SLIT homolog 2 protein 98.5 2.4E-08 8.3E-13 90.6 3.1 136 157-319 22-162 (220)
114 1ds9_A Outer arm dynein; leuci 98.5 5.8E-09 2E-13 93.1 -1.5 133 159-315 38-180 (198)
115 4ay9_X Follicle-stimulating ho 98.5 1.8E-07 6.2E-12 91.2 8.3 198 142-347 30-240 (350)
116 2v70_A SLIT-2, SLIT homolog 2 98.5 2.1E-08 7.1E-13 91.1 0.8 136 158-319 23-163 (220)
117 2v70_A SLIT-2, SLIT homolog 2 98.5 3.9E-08 1.3E-12 89.3 2.6 132 142-298 32-167 (220)
118 3cvr_A Invasion plasmid antige 98.4 3.8E-07 1.3E-11 94.4 9.2 110 192-319 60-170 (571)
119 1a9n_A U2A', U2A'; complex (nu 98.4 1E-07 3.4E-12 83.2 3.9 128 166-320 16-151 (176)
120 2xot_A Amphoterin-induced prot 98.4 5.6E-08 1.9E-12 95.4 1.9 153 159-319 31-199 (361)
121 2o6s_A Variable lymphocyte rec 98.4 5.6E-08 1.9E-12 87.3 1.7 142 172-319 10-158 (208)
122 2ra8_A Uncharacterized protein 98.4 2.3E-07 7.9E-12 90.5 5.6 133 207-341 163-318 (362)
123 3un9_A NLR family member X1; l 98.4 1.3E-08 4.4E-13 100.1 -4.3 133 169-320 101-250 (372)
124 3e6j_A Variable lymphocyte rec 98.3 1.3E-07 4.5E-12 86.3 1.9 143 171-341 21-170 (229)
125 2v9t_B SLIT homolog 2 protein 98.3 9.3E-08 3.2E-12 86.7 0.4 144 172-341 14-163 (220)
126 2ra8_A Uncharacterized protein 98.3 1.5E-06 5.1E-11 84.8 8.9 181 111-319 107-317 (362)
127 1dce_A Protein (RAB geranylger 98.2 5E-07 1.7E-11 93.8 3.9 119 192-315 442-566 (567)
128 2xot_A Amphoterin-induced prot 98.1 3.8E-07 1.3E-11 89.3 0.5 151 143-298 40-203 (361)
129 3un9_A NLR family member X1; l 98.1 3E-07 1E-11 90.3 -1.2 139 142-305 101-260 (372)
130 1w8a_A SLIT protein; signaling 98.0 9.3E-07 3.2E-11 78.2 1.2 66 159-227 21-89 (192)
131 1a9n_A U2A', U2A'; complex (nu 98.0 1.6E-06 5.6E-11 75.4 2.7 110 186-320 14-124 (176)
132 1ds9_A Outer arm dynein; leuci 98.0 3.2E-07 1.1E-11 81.6 -2.1 109 186-320 43-151 (198)
133 3e4g_A ATP synthase subunit S, 98.0 5.2E-06 1.8E-10 71.4 5.0 65 280-344 81-153 (176)
134 3sb4_A Hypothetical leucine ri 98.0 1.5E-05 5E-10 76.8 8.8 34 285-319 203-236 (329)
135 2o6r_A Variable lymphocyte rec 98.0 6.3E-06 2.1E-10 71.6 4.9 66 159-227 20-87 (177)
136 3l2o_B F-box only protein 4; s 97.9 2.3E-06 7.8E-11 78.7 0.8 35 19-53 4-38 (312)
137 2e31_A FBS1, F-box only protei 97.9 6.4E-06 2.2E-10 76.7 3.4 37 17-53 48-85 (297)
138 2wfh_A SLIT homolog 2 protein 97.8 4.3E-06 1.5E-10 73.9 2.0 58 169-227 31-89 (193)
139 1dce_A Protein (RAB geranylger 97.8 1E-05 3.5E-10 83.9 5.1 99 143-249 442-544 (567)
140 1w8a_A SLIT protein; signaling 97.8 6.6E-06 2.2E-10 72.7 3.0 124 172-298 11-140 (192)
141 2o6r_A Variable lymphocyte rec 97.8 6.4E-06 2.2E-10 71.6 2.5 76 171-249 9-87 (177)
142 2wfh_A SLIT homolog 2 protein 97.8 2E-05 7E-10 69.5 5.6 101 142-248 31-136 (193)
143 4b8c_D Glucose-repressible alc 97.8 1.8E-06 6E-11 92.5 -2.1 111 162-298 217-330 (727)
144 3sb4_A Hypothetical leucine ri 97.7 2.9E-06 1E-10 81.8 -1.1 42 282-326 224-265 (329)
145 3g39_A Variable lymphocyte rec 97.6 3.6E-05 1.2E-09 66.3 4.5 89 158-249 21-113 (170)
146 4b8c_D Glucose-repressible alc 97.6 7.7E-06 2.6E-10 87.6 -0.2 63 258-323 268-330 (727)
147 2r9u_A Variable lymphocyte rec 97.6 4.5E-05 1.5E-09 66.0 4.5 88 158-249 24-116 (174)
148 4fdw_A Leucine rich hypothetic 97.6 4.1E-05 1.4E-09 75.8 4.1 146 161-319 127-281 (401)
149 3v7d_B Cell division control p 97.5 2.1E-05 7.3E-10 79.2 1.3 39 15-53 10-48 (464)
150 2ovr_B FBW7, F-BOX/WD repeat p 97.4 7.1E-05 2.4E-09 75.0 3.5 40 14-53 13-52 (445)
151 1io0_A Tropomodulin; LRR prote 97.2 0.00011 3.8E-09 64.3 2.4 110 188-319 33-161 (185)
152 1p22_A F-BOX/WD-repeat protein 97.2 7.1E-05 2.4E-09 74.8 0.6 39 15-53 6-48 (435)
153 4fs7_A Uncharacterized protein 97.0 0.0012 4.3E-08 64.9 7.8 33 282-318 274-306 (394)
154 1io0_A Tropomodulin; LRR prote 97.0 0.00011 3.9E-09 64.2 0.0 60 168-227 35-104 (185)
155 2ifg_A High affinity nerve gro 96.9 0.00053 1.8E-08 66.3 3.6 89 158-249 21-114 (347)
156 4fdw_A Leucine rich hypothetic 96.8 0.0011 3.8E-08 65.4 5.1 168 159-337 147-330 (401)
157 2r9u_A Variable lymphocyte rec 96.7 0.00082 2.8E-08 57.9 3.5 82 142-228 33-117 (174)
158 3g39_A Variable lymphocyte rec 96.7 0.00094 3.2E-08 57.3 3.4 82 142-228 30-114 (170)
159 4gt6_A Cell surface protein; l 96.2 0.0033 1.1E-07 61.9 4.5 76 167-246 85-168 (394)
160 4fs7_A Uncharacterized protein 95.8 0.0052 1.8E-07 60.4 3.9 39 394-439 337-375 (394)
161 3rw6_A Nuclear RNA export fact 95.6 0.0028 9.5E-08 58.5 1.1 36 168-203 169-208 (267)
162 2ifg_A High affinity nerve gro 95.1 0.0073 2.5E-07 58.1 2.2 81 143-228 32-115 (347)
163 3rw6_A Nuclear RNA export fact 94.9 0.015 5.1E-07 53.6 3.5 79 142-222 170-257 (267)
164 1pgv_A TMD-1, tropomodulin TMD 84.3 0.23 7.9E-06 43.2 0.5 94 131-226 28-136 (197)
165 4gt6_A Cell surface protein; l 83.2 0.57 2E-05 45.6 2.9 122 166-294 262-388 (394)
166 1pgv_A TMD-1, tropomodulin TMD 81.8 0.45 1.5E-05 41.3 1.3 62 167-228 39-110 (197)
167 3rfe_A Platelet glycoprotein I 80.7 1.5 5.1E-05 35.1 4.0 42 160-203 24-67 (130)
168 4h09_A Hypothetical leucine ri 67.2 4 0.00014 39.1 3.9 140 168-318 193-342 (379)
169 4h09_A Hypothetical leucine ri 60.0 3.2 0.00011 39.8 1.7 97 165-268 236-341 (379)
170 3rfe_A Platelet glycoprotein I 43.3 7.7 0.00026 30.8 1.1 54 173-228 12-67 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.7e-28 Score=255.74 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCCcCCCCChHHHHHHhcCCC-hhHHHhhhcccccchhh
Q 011021 16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL 53 (495)
Q Consensus 16 ~~d~is~LPd~vL~~Ils~L~-~~d~~rts~lSkrWr~l 53 (495)
+.|+++.|||||+.+||+||| .+|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 468999999999999999999 99999999999999987
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.1e-26 Score=245.14 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCCcCC----CCChHHHHHHhcCC-ChhHHHhhhcccccchhhhc
Q 011021 16 AMDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYV 55 (495)
Q Consensus 16 ~~d~is----~LPd~vL~~Ils~L-~~~d~~rts~lSkrWr~lw~ 55 (495)
+.|+++ +||||++.+||+|| +.+|++++++|||||++++.
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 345555 89999999999999 89999999999999999854
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3e-22 Score=195.89 Aligned_cols=255 Identities=20% Similarity=0.242 Sum_probs=130.5
Q ss_pred CCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhhhcc---CceEEEecCccCCCCCCCcccccccccccchhhhhH
Q 011021 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV 92 (495)
Q Consensus 16 ~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (495)
+...+++||||++.+||+||+.+|+++++.|||||+++... +..+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 35568999999999999999999999999999999998532 122232211110
Q ss_pred HHHHHHHHHHHhhhccCCcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCCCcccccCcccccCCcce
Q 011021 93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT 172 (495)
Q Consensus 93 ~~f~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~ 172 (495)
+..+.....++++.++ +... .....+..++.+++|+
T Consensus 61 ----------------------------------------~~~~~~~~~~~l~~L~--l~~n--~l~~~~~~~~~~~~L~ 96 (336)
T 2ast_B 61 ----------------------------------------PDVTGRLLSQGVIAFR--CPRS--FMDQPLAEHFSPFRVQ 96 (336)
T ss_dssp ----------------------------------------HHHHHHHHHTTCSEEE--CTTC--EECSCCCSCCCCBCCC
T ss_pred ----------------------------------------HHHHHhhhhccceEEE--cCCc--cccccchhhccCCCCC
Confidence 0111222223344444 2111 1111222244455666
Q ss_pred EEEEeccccCCC--C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce----eecCCCCccEEEe
Q 011021 173 NLRLVWCRLEQP--F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEI 245 (495)
Q Consensus 173 ~L~L~~c~l~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~----~i~~l~~L~~L~i 245 (495)
+|++++|.+... + ....+++|++|+|+++.+++..... +..+++|++|++++|..++.. .+.++++|++|++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 666666554321 1 3345566666666666554433332 344666666666666433321 1224556666666
Q ss_pred ccc-c-c--cceEEEEeCC-cceEEEEeecC--CC-CceeEEeecCCCccEEEeeccc-cChHHHHHHhhcCCCCcEEEe
Q 011021 246 RSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFV 316 (495)
Q Consensus 246 ~~c-~-~--~l~~~~~~~p-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~L 316 (495)
.+| . . .+......+| +|++|+++++. .. ...+..++.+++|+.|+++++. +++..+.. +..+++|+.|++
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l 254 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSL 254 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEEC
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeC
Confidence 655 2 1 0111122455 66666665331 11 1122233456666666666665 44433332 345566666666
Q ss_pred cCCCCCccc----cccccccceEEeccC
Q 011021 317 TRCCLPGKI----KISSNQLKNLLFRSC 340 (495)
Q Consensus 317 ~~~~~~~~i----~~~~~~L~~L~l~~c 340 (495)
++|..+... ...+++|+.|++.+|
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666433221 123556666666665
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=1.3e-17 Score=163.69 Aligned_cols=294 Identities=12% Similarity=0.046 Sum_probs=200.7
Q ss_pred HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
.+++++++ +..+. ...+| .+..+++|++|++++|.+...+.+.++++|++|+++++.+++ ++ .+.++++|++
T Consensus 43 l~~L~~L~--l~~~~--i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLV--VAGEK--VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEE--CCSSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSE
T ss_pred cccccEEE--EeCCc--cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCE
Confidence 36788888 54322 23344 366789999999999987765557789999999999998843 22 2678999999
Q ss_pred EEEEecCCCcceeecCCCCccEEEeccccccceEE--EEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (495)
Q Consensus 221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (495)
|++++|.......+..+++|+.|++.+|. ....+ ...+++|++|+++.+...... .++.+++|+.|+++++.+.+
T Consensus 115 L~l~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCCC
T ss_pred EECcCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCcccc
Confidence 99998875443346678999999999885 22111 125788999999855443222 26688999999999888765
Q ss_pred HHHHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEEe--ccCCccceeeecccccc--eEeecCCCC
Q 011021 299 NEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISINVPCP 373 (495)
Q Consensus 299 ~~~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~--~~~~~~~~L 373 (495)
... +..+++|+.|++.+|...... ...+++|+.|.+.+|.- ..+. ..+++|++++++++.+. ..+..+++|
T Consensus 192 ~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (347)
T 4fmz_A 192 ISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKL 267 (347)
T ss_dssp CGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred ccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCc
Confidence 222 567889999999887432221 23467888888887753 2221 34788888888887754 234567889
Q ss_pred ceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHH
Q 011021 374 WKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCV 453 (495)
Q Consensus 374 ~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l 453 (495)
+.++++.+.. ..+ ..+..+++|+.|+++.+.... ..++.+..+ ++|+.|++++|+-....+ +
T Consensus 268 ~~L~l~~n~l------~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l-----~~L~~L~L~~n~l~~~~~-----~ 329 (347)
T 4fmz_A 268 KMLNVGSNQI------SDI-SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGL-----TNLTTLFLSQNHITDIRP-----L 329 (347)
T ss_dssp CEEECCSSCC------CCC-GGGGGCTTCSEEECCSSCCCG-GGHHHHHTC-----TTCSEEECCSSSCCCCGG-----G
T ss_pred CEEEccCCcc------CCC-hhhcCCCCCCEEECcCCcCCC-cChhHhhcc-----ccCCEEEccCCccccccC-----h
Confidence 9998864432 223 346788899977664433222 245667666 889999999887444332 4
Q ss_pred hhhccCCeeEEeec
Q 011021 454 FWICHPRTLRVNVM 467 (495)
Q Consensus 454 ~~~~~l~~l~i~~~ 467 (495)
..+++|++|.+.++
T Consensus 330 ~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 330 ASLSKMDSADFANQ 343 (347)
T ss_dssp GGCTTCSEESSSCC
T ss_pred hhhhccceeehhhh
Confidence 45678888888766
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=7.1e-18 Score=182.96 Aligned_cols=288 Identities=16% Similarity=0.073 Sum_probs=178.7
Q ss_pred ccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021 166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~ 244 (495)
..+++|++|++++|.+.... ..+.+++|++|+++++.+++. +...+.++++|++|++++|...+......+++|++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 56788888888888775533 567889999999999888533 3345778999999999998754444444678899999
Q ss_pred ecccc-c-cceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCC
Q 011021 245 IRSFS-E-EIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL 321 (495)
Q Consensus 245 i~~c~-~-~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 321 (495)
+.+|. . .+..... .+++|++|+++.+......+..++.+++|++|+++++.+++......+..+++|+.|++++|..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 98875 1 1111111 2488999998855443334455678888999999888876544444456788888888888743
Q ss_pred Ccccccc---cc-ccceEEeccCCC---------------cc-----------EEe---ccCCccceeeeccccc----c
Q 011021 322 PGKIKIS---SN-QLKNLLFRSCKY---------------LK-----------VID---VDAPNLLLFTYEFNPI----P 364 (495)
Q Consensus 322 ~~~i~~~---~~-~L~~L~l~~c~~---------------l~-----------~l~---~~~p~L~~l~~~~~~~----~ 364 (495)
.+.++.. .+ +|+.|+++.+.- ++ .+. -.+++|+.++++++.+ |
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 3222221 22 566666555421 11 111 1244555555555442 2
Q ss_pred eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021 365 IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS 444 (495)
Q Consensus 365 ~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~ 444 (495)
..+.++++|+.|+++.+.. ...++..+.++++|+.|+++.+.... ..|..+..+ ++|+.|++++|.-.+
T Consensus 436 ~~l~~l~~L~~L~L~~n~l-----~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l-----~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNML-----EGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNC-----TNLNWISLSNNRLTG 504 (768)
T ss_dssp GGGGGCTTCCEEECCSSCC-----CSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGC-----TTCCEEECCSSCCCS
T ss_pred HHHhcCCCCCEEECCCCcc-----cCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcC-----CCCCEEEccCCccCC
Confidence 2344556666666643332 22345666777777766553322221 236667666 778888888877554
Q ss_pred cHHHHHHHHhhhccCCeeEEeecc
Q 011021 445 DYETLLDCVFWICHPRTLRVNVMF 468 (495)
Q Consensus 445 ~~~~l~~~l~~~~~l~~l~i~~~~ 468 (495)
..|. .+-.+++|++|.+.++.
T Consensus 505 ~~p~---~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 505 EIPK---WIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCCG---GGGGCTTCCEEECCSSC
T ss_pred cCCh---HHhcCCCCCEEECCCCc
Confidence 4443 33346778888887773
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=4.9e-18 Score=184.20 Aligned_cols=299 Identities=16% Similarity=0.026 Sum_probs=180.8
Q ss_pred cccccCcccccCCcceEEEEeccccCC--CC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQ--PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL 232 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~ 232 (495)
....+|..+..+++|++|+|++|.+.. +. ..+.+++|++|+|+++.+.......+..++++|++|++++|...+..
T Consensus 88 ~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence 344566778888889999998887652 22 46778888899888887732222222357888888888888643221
Q ss_pred e-----ecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhh
Q 011021 233 C-----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS 306 (495)
Q Consensus 233 ~-----i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 306 (495)
. +.++++|++|++.+|. .+.... ..+++|++|+++++......+. ++.+++|++|+++++.+++.... .+.
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~ 244 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AIS 244 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTT
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHh
Confidence 1 4567888888888875 111111 3578888888886555443443 77888889999888888765443 356
Q ss_pred cCCCCcEEEecCCCCCccccc-cccccceEEeccCCCccEEe---cc-CCccceeeeccccc----ceEeecCCCCceEE
Q 011021 307 KFPSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCKYLKVID---VD-APNLLLFTYEFNPI----PIISINVPCPWKVS 377 (495)
Q Consensus 307 ~~~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~l~---~~-~p~L~~l~~~~~~~----~~~~~~~~~L~~l~ 377 (495)
.+++|+.|++++|...+.++. .+++|+.|++.++.-...+. .. +++|++++++++.+ |..+.++++|+.|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 788888888888854433322 45678888887764221221 11 47777777777653 23455677777777
Q ss_pred EEEecccchhhhcchH-HHhccCCccceEEEEEEecceecccccccccC----------------------CCCCCccce
Q 011021 378 FVCKGVLNTHWYLKLK-KFLGVSKQIESLKLSLYSTKVLYNLDELSECS----------------------PSLPLQVEN 434 (495)
Q Consensus 378 i~~~~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~----------------------~~~p~~L~~ 434 (495)
++.+.. ...++ ..+.++++|+.|+++.+.... ..|+.+.... ..++++|+.
T Consensus 325 L~~n~l-----~~~ip~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 325 LSSNNF-----SGELPMDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp CCSSEE-----EEECCHHHHTTCTTCCEEECCSSEEEE-CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CCCCcc-----cCcCCHHHHhcCCCCCEEeCcCCccCc-cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 753332 11233 236667777766553222210 1244443330 001245666
Q ss_pred eEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 435 LELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 435 L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
|++.+|.-.+..+ ..+-.+++|++|.+..+
T Consensus 399 L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 399 LYLQNNGFTGKIP---PTLSNCSELVSLHLSFN 428 (768)
T ss_dssp EECCSSEEEEECC---GGGGGCTTCCEEECCSS
T ss_pred EECCCCccccccC---HHHhcCCCCCEEECcCC
Confidence 6666554332222 23344667777777766
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=5.3e-17 Score=159.23 Aligned_cols=272 Identities=13% Similarity=0.108 Sum_probs=193.6
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
+++++|+ +..+ ....+|. +..+++|++|++++|.+...+.+..+++|++|+++++.+.+-. . +..++.|++|
T Consensus 66 ~~L~~L~--l~~n--~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L 137 (347)
T 4fmz_A 66 TNLEYLN--LNGN--QITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSL 137 (347)
T ss_dssp TTCCEEE--CCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEE
T ss_pred CCccEEE--ccCC--ccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEE
Confidence 5788888 5433 2234444 6778999999999998876656788999999999999884321 1 6789999999
Q ss_pred EEEecCCCcce-eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021 222 CFSNCWGLKHL-CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (495)
Q Consensus 222 ~L~~c~~l~~~-~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (495)
++.+|...... .+..+++|+.|++.+|. ..... ...+++|+.|+++++...... .+..+++|+.|+++++.+++.
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc--cccCCCccceeecccCCCCCC
Confidence 99999765543 34578999999999886 12111 126789999999855443222 266889999999999887763
Q ss_pred HHHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEEe--ccCCccceeeecccccc--eEeecCCCCc
Q 011021 300 EFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISINVPCPW 374 (495)
Q Consensus 300 ~~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~--~~~~~~~~L~ 374 (495)
.. +..+++|+.|++++|...... ...+++|+.|+++++. +..+. ..+++|+.++++++.+. ..+..+++|+
T Consensus 215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (347)
T 4fmz_A 215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290 (347)
T ss_dssp GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence 22 567899999999988432211 2356789999998874 33332 23788999999988755 3355789999
Q ss_pred eEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021 375 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 375 ~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
.|+++.+.. ....+..++++++|+.|+++.+....+ +. +..+ ++|+.|++++|+
T Consensus 291 ~L~L~~n~l-----~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-~~~l-----~~L~~L~l~~N~ 344 (347)
T 4fmz_A 291 SLFLNNNQL-----GNEDMEVIGGLTNLTTLFLSQNHITDI--RP-LASL-----SKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCC-----CGGGHHHHHTCTTCSEEECCSSSCCCC--GG-GGGC-----TTCSEESSSCC-
T ss_pred EEECcCCcC-----CCcChhHhhccccCCEEEccCCccccc--cC-hhhh-----hccceeehhhhc
Confidence 999975544 233567789999999777754443333 22 5555 889999998876
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=5.9e-17 Score=166.08 Aligned_cols=262 Identities=16% Similarity=0.075 Sum_probs=112.6
Q ss_pred ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCC
Q 011021 164 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASK 239 (495)
Q Consensus 164 ~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~ 239 (495)
.+..+++|++|+|++|.+.... .+.++++|++|+|+++.++.- ....+.++++|++|++++|..... ..+.++++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 3344555555555555443221 344555555555555544210 011234455555555555542211 11224455
Q ss_pred ccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEE
Q 011021 240 LKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (495)
Q Consensus 240 L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 315 (495)
|+.|++.++. +..+. ..+++|+.|+++.+.........+..+++|+.|++.++.+.... ...+..+++|+.|+
T Consensus 130 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 130 LKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLE 206 (477)
T ss_dssp CCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEE
T ss_pred CCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccceee
Confidence 5555555442 11111 12345555555533222111112334555555555554443311 11123445555555
Q ss_pred ecCCCCCccccc---cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEeccc
Q 011021 316 VTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVL 384 (495)
Q Consensus 316 L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~ 384 (495)
+.+|...+.++. ...+|+.|++.++. +..+. -.+++|+.++++++.+. ..+.++++|++|+++.+..
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l- 284 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL- 284 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC-
T ss_pred CCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc-
Confidence 555544433322 12245555555442 22221 12455555555555432 1233455566666543222
Q ss_pred chhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021 385 NTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 385 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
....+..+.++++|+.|+++.+....+ .+..+..+ ++|+.|++++|+
T Consensus 285 ----~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l-----~~L~~L~l~~N~ 331 (477)
T 2id5_A 285 ----AVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSV-----GNLETLILDSNP 331 (477)
T ss_dssp ----SEECTTTBTTCTTCCEEECCSSCCSCC-CGGGBSCG-----GGCCEEECCSSC
T ss_pred ----ceECHHHhcCcccCCEEECCCCcCcee-CHhHcCCC-----cccCEEEccCCC
Confidence 111234455566666554432222222 22234444 566666666665
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=7e-16 Score=157.59 Aligned_cols=291 Identities=12% Similarity=0.084 Sum_probs=188.9
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+ ....++. +..+++|++|++++|.+...+....+++|++|+++++.+.+- .. +..++.|++|
T Consensus 90 ~~L~~L~--l~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L 161 (466)
T 1o6v_A 90 TKLVDIL--MNNN--QIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SA-LSGLTSLQQL 161 (466)
T ss_dssp TTCCEEE--CCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--GG-GTTCTTCSEE
T ss_pred ccCCEEE--CCCC--ccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--hh-hccCCcccEe
Confidence 5677777 5432 2233343 667888888888888776655567888888888888888431 12 6778888888
Q ss_pred EEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (495)
.+..+. .....+.++++|+.|++++|. ..+.. ...+++|++|+++.+......+ ++.+++|+.|+++++.+++.
T Consensus 162 ~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 162 SFGNQV-TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp EEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred ecCCcc-cCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 886432 222345677889999988875 22111 1256889999888554433222 56788899999988887662
Q ss_pred HHHHhhcCCCCcEEEecCCCCCccc-cccccccceEEeccCCCccEE-eccCCccceeeecccccc--eEeecCCCCceE
Q 011021 301 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVI-DVDAPNLLLFTYEFNPIP--IISINVPCPWKV 376 (495)
Q Consensus 301 ~~~l~~~~~~L~~L~L~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~l-~~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l 376 (495)
..+..+++|+.|++++|...+.. ...+++|+.|.+.++.--... ...+++|+.++++++.+. ..+..+++|+.|
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 314 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE
T ss_pred --hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEE
Confidence 23567889999999887432222 224578888888776422111 124778888888887754 235578889999
Q ss_pred EEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhh
Q 011021 377 SFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWI 456 (495)
Q Consensus 377 ~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~ 456 (495)
+++.+...+ .+. ++.+++|+.|+++.+....+ ..+..+ ++|+.|++++|+-....+ +..+
T Consensus 315 ~L~~n~l~~------~~~-~~~l~~L~~L~l~~n~l~~~---~~l~~l-----~~L~~L~l~~n~l~~~~~-----~~~l 374 (466)
T 1o6v_A 315 TLYFNNISD------ISP-VSSLTKLQRLFFYNNKVSDV---SSLANL-----TNINWLSAGHNQISDLTP-----LANL 374 (466)
T ss_dssp ECCSSCCSC------CGG-GGGCTTCCEEECCSSCCCCC---GGGTTC-----TTCCEEECCSSCCCBCGG-----GTTC
T ss_pred ECcCCcCCC------chh-hccCccCCEeECCCCccCCc---hhhccC-----CCCCEEeCCCCccCccch-----hhcC
Confidence 886554322 222 67888888776643322222 345555 888899998887544333 4456
Q ss_pred ccCCeeEEeec
Q 011021 457 CHPRTLRVNVM 467 (495)
Q Consensus 457 ~~l~~l~i~~~ 467 (495)
++|+.|.+.++
T Consensus 375 ~~L~~L~l~~n 385 (466)
T 1o6v_A 375 TRITQLGLNDQ 385 (466)
T ss_dssp TTCCEEECCCE
T ss_pred CCCCEEeccCC
Confidence 78888888776
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=5.3e-16 Score=158.50 Aligned_cols=293 Identities=12% Similarity=0.068 Sum_probs=168.2
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
+++++|+ +..+. ...+|. +..+++|++|++++|.+...+....+++|++|+++++.+++-. . +.++++|++|
T Consensus 68 ~~L~~L~--Ls~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQIN--FSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEE--CCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred cCCCEEE--CCCCc--cCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEE
Confidence 4566666 43221 222333 5556667777776666554434556667777777666663211 1 5566777777
Q ss_pred EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (495)
++++|.......+.++++|+.|.+.++...... ...+++|+.|+++.+.... ...+..+++|+.|+++++.+++...
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccccccc
Confidence 776664322223445666776666533211111 1145677777777443322 1224567777777777777655322
Q ss_pred HHHhhcCCCCcEEEecCCCCCccc--cccccccceEEeccCCCccEEe-ccCCccceeeecccccc--eEeecCCCCceE
Q 011021 302 NHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPIP--IISINVPCPWKV 376 (495)
Q Consensus 302 ~~l~~~~~~L~~L~L~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~~--~~~~~~~~L~~l 376 (495)
...+++|+.|++++|.. ..+ ...+++|+.|++.+|.--.... -.+++|+.++++++.+. ..+..+++|+.|
T Consensus 217 ---~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 217 ---LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292 (466)
T ss_dssp ---GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred ---ccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeE
Confidence 45577788888877632 222 1245677777777764221111 23677888888877644 224567788888
Q ss_pred EEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhh
Q 011021 377 SFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWI 456 (495)
Q Consensus 377 ~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~ 456 (495)
+++.+.. ..++. ++++++|+.|+++.+..... +. +..+ ++|+.|++++|+-.. . ..+-.+
T Consensus 293 ~L~~n~l------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l-----~~L~~L~l~~n~l~~-~----~~l~~l 352 (466)
T 1o6v_A 293 ELNENQL------EDISP-ISNLKNLTYLTLYFNNISDI--SP-VSSL-----TKLQRLFFYNNKVSD-V----SSLANL 352 (466)
T ss_dssp ECCSSCC------SCCGG-GGGCTTCSEEECCSSCCSCC--GG-GGGC-----TTCCEEECCSSCCCC-C----GGGTTC
T ss_pred EcCCCcc------cCchh-hcCCCCCCEEECcCCcCCCc--hh-hccC-----ccCCEeECCCCccCC-c----hhhccC
Confidence 8854432 22222 67888899777644433322 22 4455 889999998886333 2 244567
Q ss_pred ccCCeeEEeeccc
Q 011021 457 CHPRTLRVNVMFE 469 (495)
Q Consensus 457 ~~l~~l~i~~~~~ 469 (495)
++|+.|.+.++.+
T Consensus 353 ~~L~~L~l~~n~l 365 (466)
T 1o6v_A 353 TNINWLSAGHNQI 365 (466)
T ss_dssp TTCCEEECCSSCC
T ss_pred CCCCEEeCCCCcc
Confidence 8899999988843
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=2.3e-16 Score=166.10 Aligned_cols=200 Identities=16% Similarity=0.097 Sum_probs=116.8
Q ss_pred CcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecCC-CcccccCcccccCCcceEEEEeccccCCCC---
Q 011021 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWCRLEQPF--- 185 (495)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--- 185 (495)
...++.+.+.... ..+..-.|+......++++|+ +..+. .....++.....|++|++|+|++|.+....
T Consensus 111 ~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 111 LRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp CTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 3568888887431 222455666665556699999 54332 122234444457899999999999875432
Q ss_pred ---CccCCCCCcEEEeeeEeeC---hHHHHHHHhcCCCccEEEEEecCCCcc-eeecCCCCccEEEecccccc-----ce
Q 011021 186 ---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEIRSFSEE-----IE 253 (495)
Q Consensus 186 ---~~~~l~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~L~~c~~l~~-~~i~~l~~L~~L~i~~c~~~-----l~ 253 (495)
....+++|++|+++++.++ ...+..++.+||+|++|++.+|...+. ..+.++++|+.|.+..+... ..
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 2357899999999988874 677888889999999999999753221 11224577777777643200 00
Q ss_pred EEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEec
Q 011021 254 IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (495)
Q Consensus 254 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~ 317 (495)
.....+++|+.+.++... ....+..+..+++|++|+++++.+++..+..++..+++|+.|++.
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 111134455555554211 112222333455555555555555544444444555555555554
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=4.3e-16 Score=158.59 Aligned_cols=310 Identities=13% Similarity=0.077 Sum_probs=190.4
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeEeeChHHHH-HHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~L 218 (495)
.+++.|+ +..+.....--|..+..+++|++|+|++|.+... + .+.++++|++|+|+++.+++.... ..+..+++|
T Consensus 54 ~~L~~L~--L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 54 QDLQFLK--VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp TTCCEEE--CCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred ccccEEE--CcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 4677777 5432221122244556678888888888876543 2 567788888888888887543332 236678888
Q ss_pred cEEEEEecCCCccee---ecCCCCccEEEecccc-ccceEEE---EeCCcceEEEEeecCCCCceeE--------EeecC
Q 011021 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVE---ISVPSLQQLTLLFYGARRPRVV--------EVARS 283 (495)
Q Consensus 219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~-~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~--------~~~~~ 283 (495)
++|++++|....... +.++++|+.|++++|. ....... ...++|+.++++.+........ .+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 888888886433222 4567888888888875 1111100 1225677777774333211111 12245
Q ss_pred CCccEEEeeccccChHHHHHHhh--cCCCCcEEEecCCCCCccc---------------cccccccceEEeccCCCccEE
Q 011021 284 PHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKI---------------KISSNQLKNLLFRSCKYLKVI 346 (495)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~i---------------~~~~~~L~~L~l~~c~~l~~l 346 (495)
++|+.|+++++.+++.....+.. ..++|+.|.+.+|...... ....++|+.|++.++.-....
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 78999999999988765554433 2478889988877332210 011357888888776533222
Q ss_pred e---ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccc
Q 011021 347 D---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLD 419 (495)
Q Consensus 347 ~---~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~ 419 (495)
. -.+++|+.++++++.+. ..+.++++|+.|+++.+.. ....+..++++++|+.|+++.+.... ..|+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 365 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-----GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQ 365 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CEECGGGGTTCTTCCEEECCSSCCCE-ECTT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-----CCcChhHhcCcccCCEEECCCCcccc-cChh
Confidence 1 23678888888887753 2455678888888864433 12235677888888877664433322 2466
Q ss_pred cccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 420 ELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 420 ~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
.+..+ ++|++|++++|.-....++ .+-.+++|++|.+.++
T Consensus 366 ~~~~l-----~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 366 SFLGL-----PNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTTC-----TTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSS
T ss_pred hcccc-----ccccEEECCCCccccCCHh---HhccCCcccEEEccCC
Confidence 67666 8888998888763332221 2234678888888765
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=2.5e-16 Score=167.08 Aligned_cols=284 Identities=10% Similarity=0.063 Sum_probs=163.9
Q ss_pred cCcccc--cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhc------CCCccEEEEEecCCC
Q 011021 161 LPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE------CPLLEDLCFSNCWGL 229 (495)
Q Consensus 161 lp~~l~--~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~------~p~Le~L~L~~c~~l 229 (495)
+|..+. .+++|++|++++|.+.... .+.++++|++|++++|. +++..++.-+.. +++|++|++.+|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899998 9999999999999865432 67889999999999998 765234443443 489999999998754
Q ss_pred cce----eecCCCCccEEEecccc-c-cceEEEEeCCcceEEEEeecCCCCceeEEeecCCC-ccEEEeeccccChHHHH
Q 011021 230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYFADNEFN 302 (495)
Q Consensus 230 ~~~----~i~~l~~L~~L~i~~c~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 302 (495)
.+ .+.++++|+.|++.+|. . .+. .....++|+.|+++++... ..+..++.+++ |+.|+++++.++. +.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp 393 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IP 393 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cc
Confidence 33 24577889999998875 1 122 1124456777776633221 22223445555 6666666665542 11
Q ss_pred HHhhc--CCCCcEEEecCCCCCc------------------------------cccc----cccccceEEeccCCCccEE
Q 011021 303 HLISK--FPSLEDLFVTRCCLPG------------------------------KIKI----SSNQLKNLLFRSCKYLKVI 346 (495)
Q Consensus 303 ~l~~~--~~~L~~L~L~~~~~~~------------------------------~i~~----~~~~L~~L~l~~c~~l~~l 346 (495)
..+.. +++|+.|++++|...+ .++. .+++|+.|.++++. +..+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCc
Confidence 11111 2245555555442222 2211 13445555555443 2222
Q ss_pred ecc-----------CCccceeeecccccc---eEee--cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEE-
Q 011021 347 DVD-----------APNLLLFTYEFNPIP---IISI--NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL- 409 (495)
Q Consensus 347 ~~~-----------~p~L~~l~~~~~~~~---~~~~--~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~- 409 (495)
... +++|+.++++++.+. ..+. .+++|+.|+++.+. +..+|..+.++++|+.|+++.
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~------l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS------FSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC------CSSCCCGGGGCSSCCEEECCSC
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC------CCCcChhhhcCCCCCEEECCCC
Confidence 211 116666776666532 2222 56777777774333 223566667777777666632
Q ss_pred ---Eeccee-cccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 410 ---YSTKVL-YNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 410 ---~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
..+... ..|+.+..+ ++|+.|++++|.- +.+|. .+ .++|++|.+.++
T Consensus 547 ~~ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l-~~ip~---~~--~~~L~~L~Ls~N 597 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLC-----PSLTQLQIGSNDI-RKVNE---KI--TPNISVLDIKDN 597 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCC-CBCCS---CC--CTTCCEEECCSC
T ss_pred cccccCcccccChHHHhcC-----CCCCEEECCCCcC-CccCH---hH--hCcCCEEECcCC
Confidence 112222 346667666 7788888877764 33332 11 157788887776
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=3.8e-15 Score=144.75 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=151.2
Q ss_pred HHHHHHcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhc
Q 011021 136 IRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASE 214 (495)
Q Consensus 136 i~~a~~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~ 214 (495)
+..+...+++.|+ +.... ...+|..++.+++|++|+|++|.+...+ .+..+++|++|+|++|.++ .++..+.+
T Consensus 75 l~~~~~~~l~~L~--L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 148 (328)
T 4fcg_A 75 LEDATQPGRVALE--LRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS 148 (328)
T ss_dssp HHHHTSTTCCEEE--EESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred HhcccccceeEEE--ccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence 3334446888888 54332 3478888999999999999999887544 5788999999999999885 23444778
Q ss_pred CCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc
Q 011021 215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (495)
Q Consensus 215 ~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (495)
+++|++|++++|...+.++. .+....+.+ ..-.+++|+.|+++++... ..+..++.+++|++|+++++
T Consensus 149 l~~L~~L~L~~n~~~~~~p~----~~~~~~~~~-------~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPE----PLASTDASG-------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCS----CSEEEC-CC-------CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CcCCCEEECCCCCCccccCh----hHhhccchh-------hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 99999999999876554322 111111111 0124667777777755543 34445677888999999888
Q ss_pred ccChHHHHHHhhcCCCCcEEEecCCCCCccccc---cccccceEEeccCCCccEEeccCCccceeeecccccceEeecCC
Q 011021 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVP 371 (495)
Q Consensus 295 ~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~ 371 (495)
.++. +...+..+++|+.|++++|...+.++. .+++|+.|++.+|..+..+. ..+.+++
T Consensus 217 ~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-----------------~~~~~l~ 277 (328)
T 4fcg_A 217 PLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-----------------LDIHRLT 277 (328)
T ss_dssp CCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----------------TTGGGCT
T ss_pred CCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----------------hhhhcCC
Confidence 8775 222356788899999988866665543 24566666666665443322 1123567
Q ss_pred CCceEEEEEecccchhhhcchHHHhccCCccceEEE
Q 011021 372 CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKL 407 (495)
Q Consensus 372 ~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l 407 (495)
+|+.|+++.+.. ...+|..++++++|+.+.+
T Consensus 278 ~L~~L~L~~n~~-----~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 278 QLEKLDLRGCVN-----LSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCEEECTTCTT-----CCCCCGGGGGSCTTCEEEC
T ss_pred CCCEEeCCCCCc-----hhhccHHHhhccCceEEeC
Confidence 777777754444 4456777777777775554
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=162.74 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=184.9
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--- 232 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--- 232 (495)
-..+|..+. +++++|+|++|.+.... .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+
T Consensus 23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~ 98 (477)
T 2id5_A 23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRL-KLIPLG 98 (477)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CSCCTT
T ss_pred cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcC-CccCcc
Confidence 345565442 57888888888775542 5677888899988888773211 12356788889998888753 222
Q ss_pred eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021 233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 308 (495)
.+.++++|+.|++++|. +..+. ..+++|++|+++.+......+..++++++|+.|+++++.++... ...+..+
T Consensus 99 ~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l 175 (477)
T 2id5_A 99 VFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHL 175 (477)
T ss_dssp SSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTC
T ss_pred cccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhccc
Confidence 23467888888888874 22221 24678888888854443222334567888888888888776532 2335678
Q ss_pred CCCcEEEecCCCCCccc---cccccccceEEeccCCCccEEecc---CCccceeeecccccc----eEeecCCCCceEEE
Q 011021 309 PSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVIDVD---APNLLLFTYEFNPIP----IISINVPCPWKVSF 378 (495)
Q Consensus 309 ~~L~~L~L~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~l~~~---~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i 378 (495)
++|+.|++.+|...... ...+++|+.|++.+|+.+..+... .++|++++++++.+. ..+.++++|+.|++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 88888888877432211 123567888888888777666532 447888888877643 23556788888888
Q ss_pred EEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhcc
Q 011021 379 VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICH 458 (495)
Q Consensus 379 ~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~ 458 (495)
+.+... ...+..+.++++|+.|+++...... ..|..+..+ ++|+.|++++|.-....+ ..+..+++
T Consensus 256 s~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-----~~L~~L~L~~N~l~~~~~---~~~~~l~~ 321 (477)
T 2id5_A 256 SYNPIS-----TIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGL-----NYLRVLNVSGNQLTTLEE---SVFHSVGN 321 (477)
T ss_dssp CSSCCC-----EECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTC-----TTCCEEECCSSCCSCCCG---GGBSCGGG
T ss_pred CCCcCC-----ccChhhccccccCCEEECCCCccce-ECHHHhcCc-----ccCCEEECCCCcCceeCH---hHcCCCcc
Confidence 644331 1224456778888866664332222 245666666 888888888876333222 12223567
Q ss_pred CCeeEEeec
Q 011021 459 PRTLRVNVM 467 (495)
Q Consensus 459 l~~l~i~~~ 467 (495)
|++|.+.+.
T Consensus 322 L~~L~l~~N 330 (477)
T 2id5_A 322 LETLILDSN 330 (477)
T ss_dssp CCEEECCSS
T ss_pred cCEEEccCC
Confidence 888888654
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=7.7e-16 Score=166.91 Aligned_cols=301 Identities=10% Similarity=0.043 Sum_probs=178.1
Q ss_pred cCceEeEEEeecCCCccc----------------ccCcccc--cCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeE
Q 011021 142 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERV 201 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~ 201 (495)
.+++.|+ +..+..... .+|..+. .+++|++|+|++|.+... + .+.++++|+.|+|++|
T Consensus 448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 5788888 554332221 3888887 899999999999976443 2 6788999999999999
Q ss_pred e-eChHHHHHHH-------hcCCCccEEEEEecCCCccee----ecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021 202 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHLC----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (495)
Q Consensus 202 ~-~~~~~l~~l~-------~~~p~Le~L~L~~c~~l~~~~----i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~ 268 (495)
. ++...++.-+ ..+|+|+.|++++|... .++ +.++++|+.|++++|. ..+. ....+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 8 6652333323 35569999999998754 332 4577899999998885 2222 11246778888887
Q ss_pred ecCCCCceeEEeecCCC-ccEEEeeccccChHHHHHHhhcC--CCCcEEEecCCCCCc----------------------
Q 011021 269 FYGARRPRVVEVARSPH-LKKLDLVSVYFADNEFNHLISKF--PSLEDLFVTRCCLPG---------------------- 323 (495)
Q Consensus 269 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~~L~~L~L~~~~~~~---------------------- 323 (495)
.+... ..+..+..+++ |+.|+++++.++. +...+... ++|+.|++++|...+
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 54443 33434556676 7777777776552 11111111 235555555553221
Q ss_pred ------cccc----cccccceEEeccCCCccEEecc-----------CCccceeeeccccc---ceEee--cCCCCceEE
Q 011021 324 ------KIKI----SSNQLKNLLFRSCKYLKVIDVD-----------APNLLLFTYEFNPI---PIISI--NVPCPWKVS 377 (495)
Q Consensus 324 ------~i~~----~~~~L~~L~l~~c~~l~~l~~~-----------~p~L~~l~~~~~~~---~~~~~--~~~~L~~l~ 377 (495)
.++. .+++|+.|.++++. +..++.. +++|+.++++++.+ |..+. .+++|+.|+
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEE
Confidence 1211 23445555554442 2222211 12666777766653 22222 567777777
Q ss_pred EEEecccchhhhcchHHHhccCCccceEEEEEEe----ccee-cccccccccCCCCCCccceeEEEecCCCccHHHHHHH
Q 011021 378 FVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS----TKVL-YNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDC 452 (495)
Q Consensus 378 i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~ 452 (495)
++.+. +..+|..+.++++|+.|+++... +... ..|..+..+ ++|+.|++++|.- +.+|. .
T Consensus 760 Ls~N~------L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-----~~L~~L~Ls~N~L-~~Ip~---~ 824 (876)
T 4ecn_A 760 VSYNC------FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-----PSLIQLQIGSNDI-RKVDE---K 824 (876)
T ss_dssp CCSSC------CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCC-CBCCS---C
T ss_pred eCCCC------CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-----CCCCEEECCCCCC-CccCH---h
Confidence 75433 22356666777778866664321 2222 346667666 7788888887764 33332 1
Q ss_pred HhhhccCCeeEEeec
Q 011021 453 VFWICHPRTLRVNVM 467 (495)
Q Consensus 453 l~~~~~l~~l~i~~~ 467 (495)
+ .++|+.|.+.++
T Consensus 825 l--~~~L~~LdLs~N 837 (876)
T 4ecn_A 825 L--TPQLYILDIADN 837 (876)
T ss_dssp C--CSSSCEEECCSC
T ss_pred h--cCCCCEEECCCC
Confidence 1 247788887776
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=6.2e-16 Score=163.33 Aligned_cols=260 Identities=13% Similarity=0.114 Sum_probs=192.8
Q ss_pred cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~ 244 (495)
+..+++|+.|+++++.+...+....+++|++|+++++.++ .++.+ .++.|++|++.+|..........+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5567999999999998866556778999999999999882 23333 8999999999999877777777889999999
Q ss_pred eccccccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecC
Q 011021 245 IRSFSEEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (495)
Q Consensus 245 i~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 318 (495)
+++|. +.... ..+++|++|+++.+... ..+..+..+++|+.|+++++.+.+......+..+++|+.|++++
T Consensus 357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred CcCCc--cCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 99885 33321 25789999999855432 23345678999999999999877643323456889999999999
Q ss_pred CCCCcccc---ccccccceEEeccCCCcc-EEe---ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchh
Q 011021 319 CCLPGKIK---ISSNQLKNLLFRSCKYLK-VID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTH 387 (495)
Q Consensus 319 ~~~~~~i~---~~~~~L~~L~l~~c~~l~-~l~---~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~ 387 (495)
|...+..+ ..+++|+.|.+.++.--. .+. -.+++|+.++++++.+. ..+.++++|+.|+++.+..
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---- 509 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL---- 509 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC----
Confidence 86443332 246789999998885433 122 24789999999998753 3356788999999965543
Q ss_pred hhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021 388 WYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP 442 (495)
Q Consensus 388 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~ 442 (495)
....+..++++++|+.|+++.+....+ |..+... |.+|+.|++++|+-
T Consensus 510 -~~~~~~~~~~l~~L~~L~l~~N~l~~~--p~~~~~l----~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 510 -LFLDSSHYNQLYSLSTLDCSFNRIETS--KGILQHF----PKSLAFFNLTNNSV 557 (606)
T ss_dssp -SCEEGGGTTTCTTCCEEECTTSCCCCE--ESCGGGS----CTTCCEEECCSCCC
T ss_pred -CCcCHHHccCCCcCCEEECCCCcCccc--CHhHhhh----cccCcEEEccCCCc
Confidence 233477889999999887755544444 7767665 23699999999983
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=2.7e-16 Score=156.88 Aligned_cols=269 Identities=17% Similarity=0.102 Sum_probs=169.8
Q ss_pred cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
++++.|+ +..+. ...++. .+..+++|++|++++|.+...+ .+.++++|++|+++++.++. ....++.++++|
T Consensus 69 ~~L~~L~--L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 143 (390)
T 3o6n_A 69 RQVELLN--LNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 143 (390)
T ss_dssp CCCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred ccCcEEE--CCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence 6788877 54322 223333 5566788888888888776543 45678888888888887742 112234678888
Q ss_pred cEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (495)
Q Consensus 219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (495)
++|++++|..... ..+.++++|+.|++.++. +..+.. ..++|+.++++++.. ..+...++|+.|+++++.
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCC-----SEEECCSSCSEEECCSSC
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccc-----cccCCCCcceEEECCCCe
Confidence 8888888864322 124467888888888774 222222 467888888874332 123345688888888887
Q ss_pred cChHHHHHHhhcCCCCcEEEecCCCCCcc-ccccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEe
Q 011021 296 FADNEFNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IIS 367 (495)
Q Consensus 296 ~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~ 367 (495)
++... ...+++|+.|++.+|...+. ....+++|+.|+++++. +..+. ...++|++++++++.+. ...
T Consensus 217 l~~~~----~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (390)
T 3o6n_A 217 INVVR----GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291 (390)
T ss_dssp CCEEE----CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS
T ss_pred eeecc----ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc
Confidence 76521 12457899999888743221 12246788888888774 33331 23678888888887754 223
Q ss_pred ecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021 368 INVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP 442 (495)
Q Consensus 368 ~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~ 442 (495)
..+++|+.|+++.+. +..++..+..+++|+.|+++......+ .+... ++|+.|++++|+-
T Consensus 292 ~~l~~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~-----~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDHNSIVTL----KLSTH-----HTLKNLTLSHNDW 351 (390)
T ss_dssp SCCTTCCEEECCSSC------CCCCGGGHHHHTTCSEEECCSSCCCCC----CCCTT-----CCCSEEECCSSCE
T ss_pred CCCCCCCEEECCCCc------ceecCccccccCcCCEEECCCCcccee----Cchhh-----ccCCEEEcCCCCc
Confidence 457888888885443 334555667788888666643322222 23333 7788888888773
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=3.7e-15 Score=155.41 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=84.5
Q ss_pred cCCCccEEEeeccccChHHHHH--HhhcCCCCcEEEecCCCCCc-----cccccccccceEEeccCCCccEEec---cCC
Q 011021 282 RSPHLKKLDLVSVYFADNEFNH--LISKFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCKYLKVIDV---DAP 351 (495)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~-----~i~~~~~~L~~L~l~~c~~l~~l~~---~~p 351 (495)
.+++|+.|+++++.+++..+.. ....+++|+.|++++|...+ ......++|+.|+++++. ++.++- ..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccc
Confidence 3555666666665555533322 12345666666666553211 112234566666666552 222221 245
Q ss_pred ccceeeecccccc-eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCC
Q 011021 352 NLLLFTYEFNPIP-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPL 430 (495)
Q Consensus 352 ~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~ 430 (495)
+|++++++++.+. +.....++|+.|+++.+.. . ....++++|+.|+++.+....+ |+ .... +
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l------~---~~~~~l~~L~~L~Ls~N~l~~i--p~-~~~l-----~ 473 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL------D---SFSLFLPRLQELYISRNKLKTL--PD-ASLF-----P 473 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCC------S---CCCCCCTTCCEEECCSSCCSSC--CC-GGGC-----T
T ss_pred cccEEECCCCCcccccchhcCCceEEECCCCCh------h---hhcccCChhcEEECCCCccCcC--CC-cccC-----c
Confidence 5666666665543 1111124566666643322 1 1225677888776654433333 44 3334 7
Q ss_pred ccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 431 QVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 431 ~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
+|+.|++++|.-....+ ..+-.+++|++|.+.++
T Consensus 474 ~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPD---GIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp TCCEEECCSSCCCCCCT---TGGGGCTTCCEEECCSS
T ss_pred cCCEEecCCCccCCcCH---HHHhcCcccCEEEecCC
Confidence 78888888876443333 22344677888888766
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=7e-16 Score=153.82 Aligned_cols=289 Identities=16% Similarity=0.114 Sum_probs=170.9
Q ss_pred cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.+++.++ +.. .....+|..++ .+++|++|++++|.+...+ .+..+++|++|+|+++.++.- ....+.+++.|
T Consensus 45 ~~l~~l~--l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEE--EES--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCceEEE--ecC--CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCC
Confidence 5666666 332 12345665543 4677888888887765432 456778888888887776321 11234677888
Q ss_pred cEEEEEecCCCccee---ecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (495)
Q Consensus 219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 291 (495)
++|++++|... .+. +.++++|+.|++.+|. +..+. ...++|++|+++.+.... ..++.+++|+.|++
T Consensus 120 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 120 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANV 193 (390)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTSSCTTCCEEECCSSCCSB---CCGGGCTTCSEEEC
T ss_pred CEEECCCCccC-cCCHHHhcCCCCCcEEECCCCc--cCccChhhccCCCCCCEEECCCCcCCc---cccccccccceeec
Confidence 88888877532 222 2456778888887764 21111 145677777777443321 23456777777777
Q ss_pred eccccChHHHHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEe--ccCCccceeeecccccc----e
Q 011021 292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP----I 365 (495)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~~----~ 365 (495)
+++.++. ....++|+.|++.+|.....-....++|+.|.+.++.- .... ...++|+.++++++.+. .
T Consensus 194 ~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 194 SYNLLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CSSCCSE------EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccccc------cCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChh
Confidence 7776654 23345777777777632221112345777777776642 2111 23677778887777643 2
Q ss_pred EeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCcc
Q 011021 366 ISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSD 445 (495)
Q Consensus 366 ~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~ 445 (495)
.+..+++|+.|+++.+. +..++.....+++|+.|+++.+....+ |..+... ++|+.|++++|+-...
T Consensus 267 ~~~~l~~L~~L~L~~n~------l~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l-----~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF-----DRLENLYLDHNSIVTL 333 (390)
T ss_dssp GGTTCSSCCEEECCSSC------CCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHH-----TTCSEEECCSSCCCCC
T ss_pred HccccccCCEEECCCCc------CcccCcccCCCCCCCEEECCCCcceec--Ccccccc-----CcCCEEECCCCcccee
Confidence 34567778888875432 233444456677888666644433333 6666666 7788888887763221
Q ss_pred HHHHHHHHhhhccCCeeEEeec
Q 011021 446 YETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 446 ~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
+ +-.+++|++|.+.+.
T Consensus 334 -~-----~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 334 -K-----LSTHHTLKNLTLSHN 349 (390)
T ss_dssp -C-----CCTTCCCSEEECCSS
T ss_pred -C-----chhhccCCEEEcCCC
Confidence 1 223567888888776
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=7.4e-16 Score=162.74 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=47.4
Q ss_pred CCccceeeecccccc-------eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceeccccccc
Q 011021 350 APNLLLFTYEFNPIP-------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELS 422 (495)
Q Consensus 350 ~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~ 422 (495)
+++|++++++++.+. ..+..+++|+.|+++.+.. ....+..++++++|+.|+++...... ..|+.+.
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~ 521 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-----SSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALS 521 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCG-GGGGGGT
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc-----CccChhhhccccCCCEEECCCCccCc-CChhHhC
Confidence 445555555544421 1233455666666643322 11224455566666654443221111 2344554
Q ss_pred ccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 423 ECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 423 ~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
.+ +.+ +|++++|.-....+. .+-.+++|++|.+.++
T Consensus 522 ~l-----~~L-~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 522 HL-----KGI-YLNLASNHISIILPS---LLPILSQQRTINLRQN 557 (606)
T ss_dssp TC-----CSC-EEECCSSCCCCCCGG---GHHHHHTSSEEECTTC
T ss_pred cc-----ccc-EEECcCCcccccCHh---hcccCCCCCEEeCCCC
Confidence 44 555 666666653333332 2223455666666554
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.60 E-value=8.5e-16 Score=162.29 Aligned_cols=213 Identities=12% Similarity=0.020 Sum_probs=112.8
Q ss_pred cCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH-HHHHhhcCCCCc
Q 011021 235 SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE-FNHLISKFPSLE 312 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~ 312 (495)
..+++|++|++.+|. ..+..+ .+++|+.|+++.+... ....++.+++|+.|+++++.++... .......+++|+
T Consensus 304 ~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp CTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSC--EECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred cccccCCEEEcccccCcccccC--CCCccceeeccCCcCc--cchhhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 345567777777765 223322 6677777777744221 2334556777777777777654321 012234566666
Q ss_pred EEEecCCCCCcccc---ccccccce-------------------------EEeccCCCccEEe---ccCCccceeeeccc
Q 011021 313 DLFVTRCCLPGKIK---ISSNQLKN-------------------------LLFRSCKYLKVID---VDAPNLLLFTYEFN 361 (495)
Q Consensus 313 ~L~L~~~~~~~~i~---~~~~~L~~-------------------------L~l~~c~~l~~l~---~~~p~L~~l~~~~~ 361 (495)
.|++++|.. ..++ ..+++|+. |++++|....... -.+++|++++++++
T Consensus 380 ~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 666666531 1111 12234444 4444443211111 12456666666655
Q ss_pred cc-----ceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeE
Q 011021 362 PI-----PIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLE 436 (495)
Q Consensus 362 ~~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~ 436 (495)
.+ |..+.++++|+.|+++.+.. ....+..++++++|+.|+++.+.... ..|..+..+ ++|+.|+
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l-----~~L~~L~ 527 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQL-----EQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQL-----YSLSTLD 527 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTC-----TTCCEEE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcC-----CccChhhhcccccCCEEECCCCcCCC-cCHHHccCC-----CcCCEEE
Confidence 42 22344566777777743332 12235566777788866654332222 236666666 7788888
Q ss_pred EEecCCCccHHHHHHHHhhhc-cCCeeEEeec
Q 011021 437 LHTNVPLSDYETLLDCVFWIC-HPRTLRVNVM 467 (495)
Q Consensus 437 l~~~~~~~~~~~l~~~l~~~~-~l~~l~i~~~ 467 (495)
+++|.-. .++ ..+..++ +|++|.+.+.
T Consensus 528 l~~N~l~-~~p---~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 528 CSFNRIE-TSK---GILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CTTSCCC-CEE---SCGGGSCTTCCEEECCSC
T ss_pred CCCCcCc-ccC---HhHhhhcccCcEEEccCC
Confidence 8877633 333 2244455 4888888764
No 23
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.60 E-value=1.2e-16 Score=163.09 Aligned_cols=338 Identities=15% Similarity=0.110 Sum_probs=217.2
Q ss_pred HHH-HHHHcCceEeEEEeecCCCcc---cccCcccccCCcceEEEEeccccCCCC---CccCCC----CCcEEEeeeEee
Q 011021 135 WIR-LAVENGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCL 203 (495)
Q Consensus 135 wi~-~a~~~~l~~L~l~l~~~~~~~---~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~----~L~~L~L~~~~~ 203 (495)
|.. ....++++.|+ +..+.... ..++..+..+++|++|++++|.+.... ....++ +|++|+|++|.+
T Consensus 20 ~~~~~~~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 20 WAELLPLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHHHHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HHHHHhhcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 444 33457999999 65443322 256777778899999999999875422 123344 799999999999
Q ss_pred Ch---HHHHHHHhcCCCccEEEEEecCCCccee--------ecCCCCccEEEecccc-cc-----ceEEEEeCCcceEEE
Q 011021 204 DE---QMVQKLASECPLLEDLCFSNCWGLKHLC--------VSKASKLKIMEIRSFS-EE-----IEIVEISVPSLQQLT 266 (495)
Q Consensus 204 ~~---~~l~~l~~~~p~Le~L~L~~c~~l~~~~--------i~~l~~L~~L~i~~c~-~~-----l~~~~~~~p~L~~L~ 266 (495)
++ ..+...+..++.|++|++++|.. +... ....++|++|++.+|. .. +......+++|++|+
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 54 35666678999999999999873 3211 1124689999999986 11 111112468999999
Q ss_pred EeecCCCCceeEEee-----cCCCccEEEeeccccChHH---HHHHhhcCCCCcEEEecCCCCCccc---------cccc
Q 011021 267 LLFYGARRPRVVEVA-----RSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGKI---------KISS 329 (495)
Q Consensus 267 l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~i---------~~~~ 329 (495)
++++.........+. ..++|++|+++++.+++.. +...+..+++|+.|++++|.. +.. ....
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhcCC
Confidence 995443211111111 2569999999999988754 344456789999999999842 221 1136
Q ss_pred cccceEEeccCCCccE-----Ee---ccCCccceeeecccccc----eE-----eecCCCCceEEEEEecccchhhhcch
Q 011021 330 NQLKNLLFRSCKYLKV-----ID---VDAPNLLLFTYEFNPIP----II-----SINVPCPWKVSFVCKGVLNTHWYLKL 392 (495)
Q Consensus 330 ~~L~~L~l~~c~~l~~-----l~---~~~p~L~~l~~~~~~~~----~~-----~~~~~~L~~l~i~~~~~~~~~~~~~l 392 (495)
++|+.|.+++|. +.. +. -.+++|++++++++.+. .. ..+.++|++|+++.+...... ...+
T Consensus 256 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-~~~l 333 (461)
T 1z7x_W 256 SRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC-CSHF 333 (461)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-HHHH
T ss_pred CCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH-HHHH
Confidence 799999999884 332 21 13788999999987742 01 112368999999755443321 3446
Q ss_pred HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc-cHHHHHHHHhhhccCCeeEEeeccccc
Q 011021 393 KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS-DYETLLDCVFWICHPRTLRVNVMFEED 471 (495)
Q Consensus 393 ~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~-~~~~l~~~l~~~~~l~~l~i~~~~~~~ 471 (495)
+..+.++++|++|+++.+.... ..+..+......+.++|++|++++|.-.. ....+...+..+++|++|.+.++.+..
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 7788889999977774332221 12233332100112689999998886432 223344566667889999998886666
Q ss_pred hhHHHHHH
Q 011021 472 HKFITVCY 479 (495)
Q Consensus 472 ~~~~~~~~ 479 (495)
.+......
T Consensus 413 ~~~~~l~~ 420 (461)
T 1z7x_W 413 AGILQLVE 420 (461)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
No 24
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.9e-16 Score=162.51 Aligned_cols=343 Identities=16% Similarity=0.182 Sum_probs=205.0
Q ss_pred CcccceEEEEEeccCCCCChhHHHHHHHHHHHcCceEeEEEeecC-CCcccccCcccccCCcceEEEEeccccCCCC---
Q 011021 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--- 185 (495)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~~~l~~L~l~l~~~-~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--- 185 (495)
...++.+.+.... .....+.. +.. ..+++++|+ +..+ ......++.....|++|++|++++|.+....
T Consensus 104 ~~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLV--LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp CTTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEE--EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEe--CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3567888777431 11111211 111 236899998 5433 1122235554457899999999998865422
Q ss_pred ---CccCCCCCcEEEeeeEe--eChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccEEEeccccc--------
Q 011021 186 ---DSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSE-------- 250 (495)
Q Consensus 186 ---~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~L~i~~c~~-------- 250 (495)
....+++|++|+++++. ++...+..++.+||+|++|++.+|..++.+. +..+++|+.|.+..|..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 23467899999999886 5778888888889999999999985443311 12456777776543310
Q ss_pred ----------cceEE--------------EEeCCcceEEEEeecCCCCce-eEEeecCCCccEEEeeccccChHHHHHHh
Q 011021 251 ----------EIEIV--------------EISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFADNEFNHLI 305 (495)
Q Consensus 251 ----------~l~~~--------------~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 305 (495)
.+..+ ...+++|++|+++++...... ...+..+++|++|++.++ +++..+..+.
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH
Confidence 11111 114688999999855432111 112347899999999988 6666677777
Q ss_pred hcCCCCcEEEecC--------CCCCcc-----ccccccccceEEeccCCCccE-----EeccCCccceeeec--c----c
Q 011021 306 SKFPSLEDLFVTR--------CCLPGK-----IKISSNQLKNLLFRSCKYLKV-----IDVDAPNLLLFTYE--F----N 361 (495)
Q Consensus 306 ~~~~~L~~L~L~~--------~~~~~~-----i~~~~~~L~~L~l~~c~~l~~-----l~~~~p~L~~l~~~--~----~ 361 (495)
..+++|+.|++.+ |..+.. +...+++|+.|.+ .|.++.. +.-.+|+|+.+++. + .
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 7899999999944 333322 1223678888844 4555432 11237888888887 3 1
Q ss_pred ccc---------eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccc-cccCCCCCCc
Q 011021 362 PIP---------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDEL-SECSPSLPLQ 431 (495)
Q Consensus 362 ~~~---------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~~~~~~p~~ 431 (495)
.+. ..+.++++|+.|+++. ...+ ..++.....+++|+.|+++.+..... .+..+ ... ++
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~---~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~-----~~ 482 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD---KVFEYIGTYAKKMEMLSVAFAGDSDL-GMHHVLSGC-----DS 482 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH---HHHHHHHHHCTTCCEEEEESCCSSHH-HHHHHHHHC-----TT
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--cccH---HHHHHHHHhchhccEeeccCCCCcHH-HHHHHHhcC-----CC
Confidence 111 1134678899998843 2111 22333444588899777754433211 12222 345 78
Q ss_pred cceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccchhHH
Q 011021 432 VENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEEDHKFI 475 (495)
Q Consensus 432 L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~~~~~ 475 (495)
|+.|++++|+.... .+...+..+++|++|.+.+|....++..
T Consensus 483 L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 524 (594)
T 2p1m_B 483 LRKLEIRDCPFGDK--ALLANASKLETMRSLWMSSCSVSFGACK 524 (594)
T ss_dssp CCEEEEESCSCCHH--HHHHTGGGGGGSSEEEEESSCCBHHHHH
T ss_pred cCEEECcCCCCcHH--HHHHHHHhCCCCCEEeeeCCCCCHHHHH
Confidence 99999998875221 2222333467899999998865444433
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=2.5e-16 Score=166.32 Aligned_cols=195 Identities=15% Similarity=0.056 Sum_probs=97.8
Q ss_pred CcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc----ccccccceE
Q 011021 260 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNL 335 (495)
Q Consensus 260 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~----~~~~~L~~L 335 (495)
++|++|+++++... ..+..++.+++|++|+++++.++.... ..+..+++|+.|++.+|.....++ ..+++|+.|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 45555555533221 223334455666666666665544211 223456666666666654332222 134566666
Q ss_pred EeccCCCccEEe------ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceE
Q 011021 336 LFRSCKYLKVID------VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESL 405 (495)
Q Consensus 336 ~l~~c~~l~~l~------~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L 405 (495)
+++++.- ..+. ..+++|++++++++.+. ..+..+++|+.|+++.+..... ..+..++++++|+.|
T Consensus 356 ~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 356 DLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK----DAQSPFQNLHLLKVL 430 (606)
T ss_dssp ECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC----TTCCTTTTCTTCCEE
T ss_pred ECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc----ccchhhhCcccCCEE
Confidence 6665542 2221 12566666666666532 2334566677777643322110 112346667777766
Q ss_pred EEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 406 KLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 406 ~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
+++.+.... ..|+.+..+ ++|+.|++++|+-..........+-.+++|++|.+.+|
T Consensus 431 ~l~~n~l~~-~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 431 NLSHSLLDI-SSEQLFDGL-----PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp ECTTCCCBT-TCTTTTTTC-----TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred ECCCCccCC-cCHHHHhCC-----CCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 653322211 234455555 77888888877632210001123344677888888777
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=3e-16 Score=159.80 Aligned_cols=308 Identities=12% Similarity=0.029 Sum_probs=174.3
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCC--C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
+++++|+ +..+.. ....|..+..+++|++|++++|.+... + .+.++++|++|+|+++.++... ...+.++++|
T Consensus 30 ~~l~~L~--Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVD--LSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANL 105 (455)
T ss_dssp TTCCEEE--CCSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTC
T ss_pred CccCEEE--ecCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccC
Confidence 4566666 433221 112344555667777777777655311 1 3556677777777776653211 1224566777
Q ss_pred cEEEEEecCCCcc-e---eecCCCCccEEEecccc-ccceEE--EEeCCcceEEEEeecCCCCceeEEeecC--CCccEE
Q 011021 219 EDLCFSNCWGLKH-L---CVSKASKLKIMEIRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARS--PHLKKL 289 (495)
Q Consensus 219 e~L~L~~c~~l~~-~---~i~~l~~L~~L~i~~c~-~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L 289 (495)
++|++++|...+. . .+.++++|+.|++++|. ...... ...+++|++|+++++......+..+..+ ++|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 7777777654221 1 14456677777777664 111111 1245667777776443322222222222 456666
Q ss_pred EeeccccChHH-------HHHHhhcCCCCcEEEecCCCCCccccc------cccccceEEeccCCCccE---------E-
Q 011021 290 DLVSVYFADNE-------FNHLISKFPSLEDLFVTRCCLPGKIKI------SSNQLKNLLFRSCKYLKV---------I- 346 (495)
Q Consensus 290 ~l~~~~~~~~~-------~~~l~~~~~~L~~L~L~~~~~~~~i~~------~~~~L~~L~l~~c~~l~~---------l- 346 (495)
+++++.+.+.. .......+++|+.|++++|...+.++. ...+++.|.+..+..... .
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 66666544310 001122446788888887754333222 125677777776633210 0
Q ss_pred -----eccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecc
Q 011021 347 -----DVDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYN 417 (495)
Q Consensus 347 -----~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 417 (495)
....++|+.++++++.+. ..+.++++|+.|+++.+.. ....+..+.++++|+.|+++.+.... ..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 339 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-----NKIDDNAFWGLTHLLKLNLSQNFLGS-ID 339 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-----cccChhHhcCcccCCEEECCCCccCC-cC
Confidence 012367888998887743 3356788999999954433 22335678889999977775433322 24
Q ss_pred cccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 418 LDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 418 p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
+..+..+ ++|+.|++++|.-....+ ..+-.+++|++|.+.++
T Consensus 340 ~~~~~~l-----~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 340 SRMFENL-----DKLEVLDLSYNHIRALGD---QSFLGLPNLKELALDTN 381 (455)
T ss_dssp GGGGTTC-----TTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSS
T ss_pred hhHhcCc-----ccCCEEECCCCcccccCh---hhccccccccEEECCCC
Confidence 5667666 899999999987544333 23345789999999887
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=6.4e-16 Score=162.80 Aligned_cols=270 Identities=17% Similarity=0.099 Sum_probs=182.1
Q ss_pred cCceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
++++.|+ +..+. ...++ ..+..+++|++|+|++|.+...+ .++++++|++|+|++|.++. ....++.++++|
T Consensus 75 ~~L~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L 149 (597)
T 3oja_B 75 RQVELLN--LNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL 149 (597)
T ss_dssp CCCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEE--CCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCC
Confidence 6788888 54332 22333 36667899999999998876554 45789999999999998742 122335788999
Q ss_pred cEEEEEecCCCcce--eecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021 219 EDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (495)
Q Consensus 219 e~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (495)
++|++++|...+.. .+.++++|+.|++++|. +..+.. ..++|+.|+++++.. ..++..++|+.|+++++.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l-----~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 222 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCC-----SEEECCTTCSEEECCSSC
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCcc-----ccccCCchhheeeccCCc
Confidence 99999988643322 34567899999998885 333332 468899998884332 123456789999999888
Q ss_pred cChHHHHHHhhcCCCCcEEEecCCCCCcc-ccccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEee
Q 011021 296 FADNEFNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISI 368 (495)
Q Consensus 296 ~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~ 368 (495)
++... ....++|+.|++++|...+. ....+++|+.|+++++.--.... ..+++|+.++++++.+. ....
T Consensus 223 l~~~~----~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 298 (597)
T 3oja_B 223 INVVR----GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298 (597)
T ss_dssp CCEEE----CSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSS
T ss_pred ccccc----cccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccc
Confidence 76421 12347899999998843322 12246789999998875332222 23788999999988754 3334
Q ss_pred cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC
Q 011021 369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP 442 (495)
Q Consensus 369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~ 442 (495)
.+++|+.|+++.+. +..++..+..+++|+.|+++.+....+ .+... ++|+.|++++|+-
T Consensus 299 ~l~~L~~L~Ls~N~------l~~i~~~~~~l~~L~~L~L~~N~l~~~----~~~~~-----~~L~~L~l~~N~~ 357 (597)
T 3oja_B 299 PIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDHNSIVTL----KLSTH-----HTLKNLTLSHNDW 357 (597)
T ss_dssp CCTTCCEEECCSSC------CCCCGGGHHHHTTCSEEECCSSCCCCC----CCCTT-----CCCSEEECCSSCE
T ss_pred cCCCCcEEECCCCC------CCccCcccccCCCCCEEECCCCCCCCc----Chhhc-----CCCCEEEeeCCCC
Confidence 57899999996443 335666678889999776643332222 24333 7899999998873
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=5.4e-16 Score=168.13 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=128.4
Q ss_pred cCcccccCCcceEEEEeccccCC------------------CC-Ccc--CCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 161 LPQAIFSANSVTNLRLVWCRLEQ------------------PF-DSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 161 lp~~l~~~~~L~~L~L~~c~l~~------------------~~-~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
+|..+..+++|++|+|++|.+.. .+ ..+ ++++|++|+|++|.+... ++..+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCC
Confidence 89999999999999999998876 34 444 899999999999986322 234578999999
Q ss_pred EEEEEecCCCcc--e---------eecCCCCccEEEeccccccceEEE-----EeCCcceEEEEeecCCCCceeEEeecC
Q 011021 220 DLCFSNCWGLKH--L---------CVSKASKLKIMEIRSFSEEIEIVE-----ISVPSLQQLTLLFYGARRPRVVEVARS 283 (495)
Q Consensus 220 ~L~L~~c~~l~~--~---------~i~~l~~L~~L~i~~c~~~l~~~~-----~~~p~L~~L~l~~~~~~~~~~~~~~~~ 283 (495)
.|++++|..+.. + ....+++|+.|++.+|. +..+. ..+++|+.|+++.+... ..+ .++.+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999974432 2 12245699999999986 22332 25789999999965554 445 78889
Q ss_pred CCccEEEeeccccChHHHHHHhhcCCC-CcEEEecCCCCCcccccc-----ccccceEEeccCC
Q 011021 284 PHLKKLDLVSVYFADNEFNHLISKFPS-LEDLFVTRCCLPGKIKIS-----SNQLKNLLFRSCK 341 (495)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~L~~~~~~~~i~~~-----~~~L~~L~l~~c~ 341 (495)
++|+.|+++++.++. +...+..+++ |+.|++++|.. ..++.. .++|+.|.++.+.
T Consensus 595 ~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp SEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CcceEEECcCCcccc--chHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCc
Confidence 999999999998872 3333567888 99999999853 344432 1347777777664
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=155.74 Aligned_cols=259 Identities=14% Similarity=0.063 Sum_probs=146.3
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.+++.|+ +..+.. ....|..+..+++|++|+|++|.+...+.. .+++|++|+|++|.++...++..+.++++|++|
T Consensus 45 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 45 SKLRILI--ISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp TTCCEEE--CCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccccEEe--cCCCcc-CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 4566666 433221 112244556677777777777766543322 677777777777776432222335667777777
Q ss_pred EEEecCCCcceeecCCCCc--cEEEeccccc--------cceE---------------------EE-EeCCcceEEEEee
Q 011021 222 CFSNCWGLKHLCVSKASKL--KIMEIRSFSE--------EIEI---------------------VE-ISVPSLQQLTLLF 269 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L--~~L~i~~c~~--------~l~~---------------------~~-~~~p~L~~L~l~~ 269 (495)
++++|... ...+.++++| +.|++.+|.- .+.. .. ..+++|+.++++.
T Consensus 121 ~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 121 GLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp EEEESSCC-GGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred EecCcccc-hhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 77776532 2334445566 7777766530 0000 00 1256677777764
Q ss_pred cC-------CCCceeEEeecCCCccEEEeeccccChHHHHHHhh--cCCCCcEEEecCCCCCcccccc--------cc--
Q 011021 270 YG-------ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKIKIS--------SN-- 330 (495)
Q Consensus 270 ~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~i~~~--------~~-- 330 (495)
+. ..+..+ .++.+++|+.|++.++.+++..+..+.. ..++|+.|++++|...+.++.. .+
T Consensus 200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 32 111111 4567788888888888877755554433 3568888888877432222221 12
Q ss_pred ------------------------ccceEEeccCCCccEEe--ccCCccceeeeccccc----ceEeecCCCCceEEEEE
Q 011021 331 ------------------------QLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPI----PIISINVPCPWKVSFVC 380 (495)
Q Consensus 331 ------------------------~L~~L~l~~c~~l~~l~--~~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~i~~ 380 (495)
+|+.|.++++.- ..+. ..+++|++++++++.+ +..+..+++|+.|+++.
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 244444444432 1111 2467788888887763 23445678888888864
Q ss_pred ecccchhhhcchHHHhccCCccceEEEEEE
Q 011021 381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLY 410 (495)
Q Consensus 381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 410 (495)
+...+ +..++..++++++|+.|+++..
T Consensus 358 N~l~~---l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 358 NQLKE---LSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SCCCB---HHHHHHHHTTCTTCCEEECCSS
T ss_pred CccCc---cccchHHHhhCCCCCEEECCCC
Confidence 44321 2245667888888887776443
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=3.8e-16 Score=165.63 Aligned_cols=306 Identities=10% Similarity=0.063 Sum_probs=197.9
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccc-cCC--CC-CccC------CCCCcEEEeeeEeeChHHHHH-
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF-DSIM------LCSLKKLTLERVCLDEQMVQK- 210 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~-l~~--~~-~~~~------l~~L~~L~L~~~~~~~~~l~~- 210 (495)
.++++|+ +..+. ....+|..+..+++|++|++++|. +.. .+ ..+. +++|++|+++++.++ .++.
T Consensus 249 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~ 323 (636)
T 4eco_A 249 KDLTDVE--VYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE 323 (636)
T ss_dssp TTCCEEE--EECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred CCCCEEE--ecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence 5788888 55332 234788888899999999999997 654 22 3334 489999999999885 3433
Q ss_pred -HHhcCCCccEEEEEecCCCcce-eecCCCCccEEEeccccccceEEE---EeCC-------------------------
Q 011021 211 -LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSFSEEIEIVE---ISVP------------------------- 260 (495)
Q Consensus 211 -l~~~~p~Le~L~L~~c~~l~~~-~i~~l~~L~~L~i~~c~~~l~~~~---~~~p------------------------- 260 (495)
.+.++++|++|++++|...+.+ .+..+++|+.|++++|. +..+. ...+
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~--l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ--ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE--EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc--cccccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 5778999999999988643222 22234556666665553 11110 1122
Q ss_pred -cceEEEEeecCCCCceeEEee-------cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc-c--
Q 011021 261 -SLQQLTLLFYGARRPRVVEVA-------RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS-S-- 329 (495)
Q Consensus 261 -~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~-~-- 329 (495)
+|+.|+++.+......+..++ .+++|+.|+++++.++. ....+...+++|+.|++++|... .++.. +
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 479 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD 479 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc
Confidence 455555554333322222333 45688888888887763 23344556899999999988433 44321 1
Q ss_pred --------cccceEEeccCCCccEEe---c--cCCccceeeeccccc---ceEeecCCCCceEEEEEec--ccchhhhcc
Q 011021 330 --------NQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKG--VLNTHWYLK 391 (495)
Q Consensus 330 --------~~L~~L~l~~c~~l~~l~---~--~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~--~~~~~~~~~ 391 (495)
++|+.|+++++. +..+. . ..++|+.++++++.+ |..+.++++|+.|+++.+. ..+. ....
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~-l~~~ 557 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR-TLRE 557 (636)
T ss_dssp TTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCB-CCCC
T ss_pred ccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCc-cccc
Confidence 289999998875 33443 1 578999999998874 4455678999999996433 1111 1345
Q ss_pred hHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC-----CccHHHHHHHHhhhccCCeeEEee
Q 011021 392 LKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP-----LSDYETLLDCVFWICHPRTLRVNV 466 (495)
Q Consensus 392 l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~-----~~~~~~l~~~l~~~~~l~~l~i~~ 466 (495)
+|..+.++++|+.|+++.+....+ |..+. ++|+.|++++|+- ....+.+..+...+...++..|.+
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l~~i--p~~~~-------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 628 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDIRKV--NEKIT-------PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCCCBC--CSCCC-------TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEES
T ss_pred ChHHHhcCCCCCEEECCCCcCCcc--CHhHh-------CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCC
Confidence 678889999999887755444433 55542 6799999999972 333444444444455667778888
Q ss_pred c
Q 011021 467 M 467 (495)
Q Consensus 467 ~ 467 (495)
|
T Consensus 629 C 629 (636)
T 4eco_A 629 C 629 (636)
T ss_dssp C
T ss_pred C
Confidence 8
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.3e-15 Score=160.39 Aligned_cols=294 Identities=16% Similarity=0.091 Sum_probs=192.0
Q ss_pred cCceEeEEEeecCCCcccccCcccc-cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.+++.++ +.. .....+|..++ .+++|++|+|++|.+...+ .+..+++|++|+|+++.++.- ....+.++++|
T Consensus 51 ~~l~~l~--l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEE--ESS--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCceEEE--eeC--CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCC
Confidence 4666666 332 23455666544 4788999999998876543 567889999999998887431 12335788999
Q ss_pred cEEEEEecCCCccee---ecCCCCccEEEecccc-ccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeec
Q 011021 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (495)
Q Consensus 219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~-~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (495)
++|++++|.. ..+. +.++++|+.|++++|. ..+..-. ..+++|+.|+++++.... ..++.+++|+.|++++
T Consensus 126 ~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---CCGGGCTTCSEEECCS
T ss_pred CEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---cChhhhhhhhhhhccc
Confidence 9999998864 3332 3467889999998885 1111111 246788888888544322 2356788888888888
Q ss_pred cccChHHHHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEe-ccCCccceeeecccccc----eEee
Q 011021 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPIP----IISI 368 (495)
Q Consensus 294 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~~----~~~~ 368 (495)
+.++. +...++|+.|++++|..........++|+.|.+.++.--..-. ..+++|+.++++++.+. ..+.
T Consensus 202 n~l~~------l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 202 NLLST------LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp SCCSE------EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred Ccccc------ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 87765 2345688888888874322222234678888887764221111 23788888888887753 3455
Q ss_pred cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHH
Q 011021 369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYET 448 (495)
Q Consensus 369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 448 (495)
++++|+.|+++.+. +..++.....+++|+.|+++.+....+ |..+..+ ++|+.|++++|+-....
T Consensus 276 ~l~~L~~L~Ls~N~------l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l-----~~L~~L~L~~N~l~~~~-- 340 (597)
T 3oja_B 276 KMQRLERLYISNNR------LVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQF-----DRLENLYLDHNSIVTLK-- 340 (597)
T ss_dssp TCSSCCEEECTTSC------CCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHH-----TTCSEEECCSSCCCCCC--
T ss_pred CccCCCEEECCCCC------CCCCCcccccCCCCcEEECCCCCCCcc--CcccccC-----CCCCEEECCCCCCCCcC--
Confidence 67888888885332 334455567788899777754444444 7777777 88999999988733221
Q ss_pred HHHHHhhhccCCeeEEeeccc
Q 011021 449 LLDCVFWICHPRTLRVNVMFE 469 (495)
Q Consensus 449 l~~~l~~~~~l~~l~i~~~~~ 469 (495)
+-.+++|++|.+.++.+
T Consensus 341 ----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 341 ----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ----CCTTCCCSEEECCSSCE
T ss_pred ----hhhcCCCCEEEeeCCCC
Confidence 23457889999887633
No 32
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=4e-14 Score=148.46 Aligned_cols=268 Identities=17% Similarity=0.052 Sum_probs=185.9
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.+++.++ +... .-..+|..+. ++|++|++++|.+...+. .+++|++|+|++|.++. ++ ..+++|++|
T Consensus 40 ~~l~~L~--ls~n--~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLN--VGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLEL 106 (622)
T ss_dssp HCCCEEE--CCSS--CCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEE
T ss_pred CCCcEEE--ecCC--CcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEE
Confidence 4677777 5432 2347777665 789999999998875433 68999999999998842 22 268999999
Q ss_pred EEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (495)
++++|.. ..+.. .+++|+.|++.+|. +..+....++|++|+++.+.... .+ ..+++|+.|+++++.++.
T Consensus 107 ~Ls~N~l-~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~--- 175 (622)
T 3g06_A 107 SIFSNPL-THLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS--- 175 (622)
T ss_dssp EECSCCC-CCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC---
T ss_pred ECcCCcC-CCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC-cC---CccCCCCEEECCCCCCCC---
Confidence 9998864 33222 46899999999885 33344456899999998554422 11 246789999999888776
Q ss_pred HHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccc-eEeecCCCCceEEEEE
Q 011021 302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP-IISINVPCPWKVSFVC 380 (495)
Q Consensus 302 ~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~ 380 (495)
+...+++|+.|++++|. +..++...++|+.|.+.++. +..+.-..++|++++++++.+. +. ..+++|+.|+++.
T Consensus 176 --l~~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp-~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 176 --LPMLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLP-VLPSELKELMVSG 250 (622)
T ss_dssp --CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCS
T ss_pred --CcccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCC-CCCCcCcEEECCC
Confidence 12567899999999874 44455556788888887763 4444444678888888888755 22 4568899999864
Q ss_pred ecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHh
Q 011021 381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVF 454 (495)
Q Consensus 381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~ 454 (495)
+. +..++. .+++|+.|+++.+....+ |..+..+ ++|+.|++++|+-.+..+..+..+.
T Consensus 251 N~------L~~lp~---~~~~L~~L~Ls~N~L~~l--p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 251 NR------LTSLPM---LPSGLLSLSVYRNQLTRL--PESLIHL-----SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SC------CSCCCC---CCTTCCEEECCSSCCCSC--CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CC------CCcCCc---ccccCcEEeCCCCCCCcC--CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcc
Confidence 43 333444 567888777654444433 7778777 8899999999886665555555444
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=159.57 Aligned_cols=136 Identities=11% Similarity=-0.086 Sum_probs=62.7
Q ss_pred CcccccCCcceEEEEeccccCC---CCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc----eee
Q 011021 162 PQAIFSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH----LCV 234 (495)
Q Consensus 162 p~~l~~~~~L~~L~L~~c~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----~~i 234 (495)
|..+..+++|++|+|++|.... +..+.++++|++|+|++|.+... .+..+.++++|++|++++|...+. ..+
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 3444555666666666653211 11345566666666666655211 112244566666666666543221 113
Q ss_pred cCCCCccEEEecccc-ccceE--EEEeCCcceEEEEeecCCCCceeEEeecC--CCccEEEeeccccCh
Q 011021 235 SKASKLKIMEIRSFS-EEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARS--PHLKKLDLVSVYFAD 298 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~-~~l~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~ 298 (495)
.++++|+.|++++|. ..... .-..+++|++|+++.+......+..++.+ ++|+.|+++++.+..
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 445566666666554 11100 01134556666665333222222222233 556666665555443
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.53 E-value=5.2e-14 Score=146.71 Aligned_cols=307 Identities=15% Similarity=0.062 Sum_probs=181.3
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
..+++|+ +..+.. ....|..+..+++|++|++++|.+...+ .+.++++|++|+|+++.+++.. ...+.++++|+
T Consensus 26 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLD--LSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLK 101 (549)
T ss_dssp TTCCEEE--CCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCC
T ss_pred CCccEEE--CcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCc
Confidence 4677777 543321 1223456677899999999998875543 4678899999999999884322 23467899999
Q ss_pred EEEEEecCCCc-c--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021 220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (495)
Q Consensus 220 ~L~L~~c~~l~-~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (495)
+|++++|.... . ..+.++++|+.|++.+|. ....+. ..+++|+.|+++++......+..++.+++|++|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999886432 1 234567899999998875 233332 146789999998665544344456678888889988
Q ss_pred ccccChHHHHHHhhcCCCCcEEEecCCCCCcc------ccccccccceEEeccCC-----------------CccEEe--
Q 011021 293 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGK------IKISSNQLKNLLFRSCK-----------------YLKVID-- 347 (495)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~------i~~~~~~L~~L~l~~c~-----------------~l~~l~-- 347 (495)
++.... ....+...+++|+.|++++|...+. +....++|+.|.+.++. +++.+.
T Consensus 181 ~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 877654 2233345688899999988743221 11224556666555432 111111
Q ss_pred ------------------ccCCccceeeecccccc-e-E-------eecCCCCceEEEEEecccchhhhcchHHH-hccC
Q 011021 348 ------------------VDAPNLLLFTYEFNPIP-I-I-------SINVPCPWKVSFVCKGVLNTHWYLKLKKF-LGVS 399 (495)
Q Consensus 348 ------------------~~~p~L~~l~~~~~~~~-~-~-------~~~~~~L~~l~i~~~~~~~~~~~~~l~~~-l~~l 399 (495)
-..++++.+.+.+..++ . . ....++|+.++++.+. +..+|.. ++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~------l~~ip~~~~~~l 333 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK------VFLVPCSFSQHL 333 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC------CCCCCHHHHHHC
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc------cccCCHHHHhcC
Confidence 11334444444443322 0 0 1123466777775332 2234433 3678
Q ss_pred CccceEEEEEEecceeccc---ccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 400 KQIESLKLSLYSTKVLYNL---DELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 400 ~~L~~L~l~~~~~~~~~~p---~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
++|+.|+++....... .| ..++.. ++|+.|++++|.-.. .+.....+-.+++|++|.+.++
T Consensus 334 ~~L~~L~Ls~N~l~~~-~~~~~~~~~~l-----~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 334 KSLEFLDLSENLMVEE-YLKNSACKGAW-----PSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp TTCCEEECCSSCCCHH-HHHHHTCTTSS-----TTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTC
T ss_pred ccccEEEccCCccccc-cccchhhhhcc-----ccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCC
Confidence 8888666643322211 12 223444 778888888775322 2221123445678888888777
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=1.2e-14 Score=147.80 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=6.8
Q ss_pred CccceeEEEecC
Q 011021 430 LQVENLELHTNV 441 (495)
Q Consensus 430 ~~L~~L~l~~~~ 441 (495)
++|+.|++++|.
T Consensus 339 ~~L~~L~l~~N~ 350 (457)
T 3bz5_A 339 TKLKSLSCVNAH 350 (457)
T ss_dssp TTCSEEECCSSC
T ss_pred CcCcEEECCCCC
Confidence 555666555554
No 36
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=9.9e-16 Score=156.15 Aligned_cols=345 Identities=17% Similarity=0.084 Sum_probs=213.6
Q ss_pred cccceEEEEEeccCCCCChhHHHHHHHHHHH--cCceEeEEEeecCCCcccccCcccccCC----cceEEEEeccccCCC
Q 011021 111 FCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSAN----SVTNLRLVWCRLEQP 184 (495)
Q Consensus 111 ~~l~~l~l~~~~~~~~~~~~~~~~wi~~a~~--~~l~~L~l~l~~~~~~~~~lp~~l~~~~----~L~~L~L~~c~l~~~ 184 (495)
..++.+.+.... ...... ..+..+.. +++++|+ +..+......+......++ +|++|++++|.+...
T Consensus 28 ~~L~~L~L~~~~----l~~~~~-~~l~~~l~~~~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 28 QQCQVVRLDDCG----LTEARC-KDISSALRVNPALAELN--LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TTCSEEEEESSC----CCHHHH-HHHHHHHHTCTTCCEEE--CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CCccEEEccCCC----CCHHHH-HHHHHHHHhCCCcCEEe--CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 357777777432 122112 22333322 6899998 6543322211111111233 799999999987742
Q ss_pred -----C-CccCCCCCcEEEeeeEeeChHHHHHHHh----cCCCccEEEEEecCCCcc------eeecCCCCccEEEeccc
Q 011021 185 -----F-DSIMLCSLKKLTLERVCLDEQMVQKLAS----ECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSF 248 (495)
Q Consensus 185 -----~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~----~~p~Le~L~L~~c~~l~~------~~i~~l~~L~~L~i~~c 248 (495)
+ ....+++|++|+++++.+++.....+.. ..+.|++|++++|..-.. ..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 1 4568999999999999996665554443 356899999999964321 12235689999999988
Q ss_pred c-c--cceEEEE----eCCcceEEEEeecCCCCc----eeEEeecCCCccEEEeeccccChHHHHHHh----hcCCCCcE
Q 011021 249 S-E--EIEIVEI----SVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNEFNHLI----SKFPSLED 313 (495)
Q Consensus 249 ~-~--~l~~~~~----~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~~L~~ 313 (495)
. . ....+.- ..++|++|+++++..... ....+..+++|++|+++++.+++.....+. ..+++|+.
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 6 1 1111111 245999999986544321 233345789999999999998876554433 35899999
Q ss_pred EEecCCCCCcc-----ccc---cccccceEEeccCCCcc----EE----eccCCccceeeecccccc--------eEeec
Q 011021 314 LFVTRCCLPGK-----IKI---SSNQLKNLLFRSCKYLK----VI----DVDAPNLLLFTYEFNPIP--------IISIN 369 (495)
Q Consensus 314 L~L~~~~~~~~-----i~~---~~~~L~~L~l~~c~~l~----~l----~~~~p~L~~l~~~~~~~~--------~~~~~ 369 (495)
|++++|. +.. +.. .+++|+.|+++++.--. .+ ....++|++++++++.+. ..+..
T Consensus 261 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 261 LWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp EECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred EECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 9999983 332 222 36789999998874210 11 112368999999887743 12345
Q ss_pred CCCCceEEEEEecccchhhhcchHHHhcc-CCccceEEEEEEeccee---cccccccccCCCCCCccceeEEEecCCCcc
Q 011021 370 VPCPWKVSFVCKGVLNTHWYLKLKKFLGV-SKQIESLKLSLYSTKVL---YNLDELSECSPSLPLQVENLELHTNVPLSD 445 (495)
Q Consensus 370 ~~~L~~l~i~~~~~~~~~~~~~l~~~l~~-l~~L~~L~l~~~~~~~~---~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~ 445 (495)
+++|++|+++.+...... ...+...+.. .++|++|+++.+..... ..+..+... ++|++|++++|+-...
T Consensus 340 ~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAG-VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-----HSLRELDLSNNCLGDA 413 (461)
T ss_dssp CSSCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-----CCCCEEECCSSSCCHH
T ss_pred CCCccEEEccCCcccccc-HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC-----CCccEEECCCCCCCHH
Confidence 689999999755432221 2233344443 77999887744333310 225566666 8999999999974433
Q ss_pred -HHHHHHHHhh-hccCCeeEEeeccc
Q 011021 446 -YETLLDCVFW-ICHPRTLRVNVMFE 469 (495)
Q Consensus 446 -~~~l~~~l~~-~~~l~~l~i~~~~~ 469 (495)
...+...+.. .+.+++|.+.+...
T Consensus 414 ~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 414 GILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHHHhccCCcchhheeeccccc
Confidence 3344444433 34699999887743
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=3.4e-14 Score=144.27 Aligned_cols=195 Identities=16% Similarity=0.031 Sum_probs=113.3
Q ss_pred CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c 248 (495)
++|++|++++|.+...+.+.++++|++|+++++.++. ++ ...+.|++|++++|...+-..+.++++|+.|++.+|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 5677777777766554456667777777777776632 11 123467777777775432223456777888887777
Q ss_pred cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS 328 (495)
Q Consensus 249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~ 328 (495)
. +..+....++|++|+++++... ..+ .++.+++|+.|+++++.++. +....++|+.|++++|. +..++..
T Consensus 206 ~--l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~-l~~l~~~ 275 (454)
T 1jl5_A 206 S--LKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNY-LTDLPEL 275 (454)
T ss_dssp C--CSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSC-CSCCCCC
T ss_pred c--CCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCc-ccccCcc
Confidence 4 2222223457888888754433 233 36677888888888777654 11234678888887764 3334444
Q ss_pred ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEE
Q 011021 329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFV 379 (495)
Q Consensus 329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~ 379 (495)
.++|+.|+++++. +..+.--.++|+.++++++.+.......++|+.++++
T Consensus 276 ~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 276 PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325 (454)
T ss_dssp CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECC
Confidence 5677777777653 3333222356666666665543111112366666664
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=2.1e-14 Score=153.77 Aligned_cols=294 Identities=16% Similarity=0.089 Sum_probs=131.7
Q ss_pred cccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCc
Q 011021 165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL 240 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L 240 (495)
+..+++|++|++++|.+.... .+.++++|++|+|+++.++.- ....+.++++|++|++++|..... ..+.++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 444666666666666554332 344566666666666655210 111244566666666666643211 123355666
Q ss_pred cEEEecccc-ccceE-EEEeCCcceEEEEeecCCCCceeEEe--ecCCCccEEEeeccccChHHHHHHhh----------
Q 011021 241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV--ARSPHLKKLDLVSVYFADNEFNHLIS---------- 306 (495)
Q Consensus 241 ~~L~i~~c~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~---------- 306 (495)
++|++.+|. ..... ....+++|++|+++.+......+..+ ..+++|+.|+++++.+++.... .+.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEEC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhc
Confidence 666666654 11110 01135566666666333222111111 1345666666665544321000 001
Q ss_pred -----------------cCCCCcEEEecCCCCCcccccc---c--cccceEEeccCCCccEEe----ccCCccceeeecc
Q 011021 307 -----------------KFPSLEDLFVTRCCLPGKIKIS---S--NQLKNLLFRSCKYLKVID----VDAPNLLLFTYEF 360 (495)
Q Consensus 307 -----------------~~~~L~~L~L~~~~~~~~i~~~---~--~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~ 360 (495)
..++|+.|++.+|...+..+.. . ++|+.|+++++. +..+. -.+++|+++++++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCC
Confidence 1244555555554222111111 1 236666665553 22221 1256666666666
Q ss_pred cccc----eEeecCCCCceEEEEEecccchhhhcchH----HHhccCCccceEEEEEEecceecccccccccCCCCCCcc
Q 011021 361 NPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLK----KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQV 432 (495)
Q Consensus 361 ~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~----~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L 432 (495)
+.+. ..+.++++|+.++++.+...+......++ ..++++++|+.|+++...... ..+..+..+ ++|
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-----~~L 355 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGL-----INL 355 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC-CCTTTTTTC-----TTC
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC-CChhHhccc-----cCC
Confidence 5532 23345566666666322111110001111 145667777755553222221 234445555 677
Q ss_pred ceeEEEecC-CCccHHHHHHHHhhhccCCeeEEeec
Q 011021 433 ENLELHTNV-PLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 433 ~~L~l~~~~-~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
++|++++|. ....++.....-+..+++++|.+..+
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 777777654 11111110001112246777777665
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=2.8e-14 Score=144.93 Aligned_cols=239 Identities=14% Similarity=0.066 Sum_probs=141.4
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+... .+| +..+++|++|++++|.+...+ ...+++|++|+++++.++.- + +.+++.|++|
T Consensus 85 ~~L~~L~--Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L 153 (457)
T 3bz5_A 85 TNLTYLA--CDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL 153 (457)
T ss_dssp TTCSEEE--CCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCCc--eee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence 4666666 4432222 222 455677777777777765542 56777777777777776432 1 5677777777
Q ss_pred EEEecCCCcceeecCCCCccEEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (495)
++.+|..++.+.+..+++|+.|++++|. +..+.+ .+++|+.|+++.+.... ..++.+++|+.|+++++.+++-
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~---~~l~~l~~L~~L~Ls~N~l~~i- 227 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEI- 227 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSC---CCCTTCTTCSEEECCSSCCSCC-
T ss_pred ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCe---eccccCCCCCEEECcCCccccc-
Confidence 7777766666666667778888777774 222223 45677777777444322 1366777888888887777661
Q ss_pred HHHHhhcCCCCcEEEecCCCCCcccccccc----------ccceEEeccCCCccEEecc-CCccceeeeccccc------
Q 011021 301 FNHLISKFPSLEDLFVTRCCLPGKIKISSN----------QLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNPI------ 363 (495)
Q Consensus 301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~----------~L~~L~l~~c~~l~~l~~~-~p~L~~l~~~~~~~------ 363 (495)
. +..+++|+.|++++|...+.....++ +|+.|++..|..+..+... +++|+.++++++..
T Consensus 228 -p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 228 -D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp -C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred -C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 1 45677888888877632221111233 3344445555544444433 56677777666541
Q ss_pred -----c-eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021 364 -----P-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 364 -----~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
. ..+.+.++|+.++++.+. +..++ ++++++|+.|+++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~------l~~l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTE------LTELD--VSHNTKLKSLSCV 347 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCC------CSCCC--CTTCTTCSEEECC
T ss_pred CCCcceEechhhcccCCEEECCCCc------ccccc--cccCCcCcEEECC
Confidence 1 123345677777774332 22232 7788888877663
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.49 E-value=2.6e-14 Score=153.02 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=31.7
Q ss_pred HhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeec
Q 011021 395 FLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 395 ~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
.++++++|+.|+++......+ .+..+..+ ++|+.|++++|.-....+.... ..+++|++|.+.+.
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~--~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTL-PASVFNNQ-----VSLKSLNLQKNLITSVEKKVFG--PAFRNLTELDMRFN 619 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCC-CTTTTTTC-----TTCCEEECTTSCCCBCCHHHHH--HHHTTCSEEECTTC
T ss_pred HcccccCcceeECCCCCCCcC-CHhHhCCC-----CCCCEEECCCCcCCccChhHhc--ccccccCEEEccCC
Confidence 356666666555532222222 22233444 6677777776653333322211 02456777777654
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=4.2e-14 Score=146.48 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=97.9
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeec
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS 235 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~ 235 (495)
-..+|..+. ++|++|++++|.+...+ .+.++++|++|+|+++.+++.. +..+.++++|++|++++|.. ..++..
T Consensus 12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~ 87 (520)
T 2z7x_B 12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKL-VKISCH 87 (520)
T ss_dssp CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSSCC-CEEECC
T ss_pred ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCCce-eecCcc
Confidence 346777665 89999999999987654 5678999999999999884321 23467899999999999964 444444
Q ss_pred CCCCccEEEecccc-ccce--EEEEeCCcceEEEEeecCCCCceeEEeecCCCc--cEEEeecccc
Q 011021 236 KASKLKIMEIRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHL--KKLDLVSVYF 296 (495)
Q Consensus 236 ~l~~L~~L~i~~c~-~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 296 (495)
.+++|++|++++|. ..+. .....+++|++|+++++.... ..++.+++| +.|+++++.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 78999999999986 2111 111257899999999655533 345677888 9999998876
No 42
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=7.3e-15 Score=143.21 Aligned_cols=203 Identities=19% Similarity=0.291 Sum_probs=139.6
Q ss_pred HHHHHHHHH-cCceEeEEEeecCCCcccccCcccccC--CcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHH
Q 011021 133 DRWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSA--NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMV 208 (495)
Q Consensus 133 ~~wi~~a~~-~~l~~L~l~l~~~~~~~~~lp~~l~~~--~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l 208 (495)
.+|-..+.. ...+.++ +...... |..+... ++++.|+++++.+.... ....+++|++|+++++.+++..+
T Consensus 37 ~~W~~~~~~~~~~~~l~--l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 37 KRWYRLASDESLWQTLD--LTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHHHHTCSTTSSEEE--CTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHhcCchhheeec--cccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHH
Confidence 456555543 2366777 4321111 3334444 88999999999876654 56689999999999999988878
Q ss_pred HHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc--c--cceEEEEeCCcceEEEEeec-CCCCc-eeEEe
Q 011021 209 QKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--E--EIEIVEISVPSLQQLTLLFY-GARRP-RVVEV 280 (495)
Q Consensus 209 ~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~--~--~l~~~~~~~p~L~~L~l~~~-~~~~~-~~~~~ 280 (495)
...+.+||+|++|++++|..... ..+..+++|++|++.+|. . .+..+...+++|++|+++++ ..... .+..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 88899999999999999964322 234468999999999984 1 12222235788999998865 33221 23345
Q ss_pred ecCC-CccEEEeecc--ccChHHHHHHhhcCCCCcEEEecCCCCCccc-c---ccccccceEEeccCC
Q 011021 281 ARSP-HLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKI-K---ISSNQLKNLLFRSCK 341 (495)
Q Consensus 281 ~~~~-~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i-~---~~~~~L~~L~l~~c~ 341 (495)
+.++ +|++|+++++ .+++..+...+..+++|+.|++++|..++.. . ...++|+.|++.+|.
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 6788 8999999888 5676666667778899999999888643321 1 134566666666664
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=153.06 Aligned_cols=155 Identities=15% Similarity=0.035 Sum_probs=106.4
Q ss_pred cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCC-C-CccCCCCCcEEEeeeEeeChHHHH-HHHhcCCC
Q 011021 142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQ-KLASECPL 217 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~ 217 (495)
.+++.|+ +..+.. ...+ |..+..+++|++|+|++|.+... + .+.++++|++|+|++|.+++.... ..+.++++
T Consensus 48 ~~L~~Ld--Ls~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLE--LGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEE--ECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEe--CCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 4678888 543322 2344 56677789999999999987643 2 678899999999999988532222 23568999
Q ss_pred ccEEEEEecCCCcc---eeecCCCCccEEEecccc-ccceEEEE---eCCcceEEEEeecCCCCceeEEeecCCC-----
Q 011021 218 LEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPH----- 285 (495)
Q Consensus 218 Le~L~L~~c~~l~~---~~i~~l~~L~~L~i~~c~-~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~----- 285 (495)
|++|++++|...+. ..+.++++|+.|++.++. .....-.+ ..++|+.|+++.+......+..++.+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 99999999875332 135678999999999875 11111111 1278999999866555545555555655
Q ss_pred -ccEEEeeccccChH
Q 011021 286 -LKKLDLVSVYFADN 299 (495)
Q Consensus 286 -L~~L~l~~~~~~~~ 299 (495)
|+.|+++++.++..
T Consensus 205 ~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 205 VLEILDVSGNGWTVD 219 (844)
T ss_dssp CBSEEBCSSCCSSTT
T ss_pred ceeEEecCCCcCchh
Confidence 99999998876553
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=3.5e-15 Score=156.30 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=94.4
Q ss_pred CccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-ccccccceEEeccCCCccEE---e---ccCCccceee
Q 011021 285 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVI---D---VDAPNLLLFT 357 (495)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-~~~~~L~~L~l~~c~~l~~l---~---~~~p~L~~l~ 357 (495)
+|++|+++++.+.. +. ...+++|+.|++.+|.....+. ..+++|+.|+++++.- ..+ . ..+++|++++
T Consensus 305 ~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEE
T ss_pred CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc-CccccccccccccCccCEEE
Confidence 45555555444431 00 1245666666666654333222 2456777777766542 222 1 2367888888
Q ss_pred ecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccce
Q 011021 358 YEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVEN 434 (495)
Q Consensus 358 ~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~ 434 (495)
++++.+. ..+..+++|+.|+++.+..... .....+.++++|+.|+++.+.... ..|..+..+ ++|+.
T Consensus 380 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l-----~~L~~ 449 (570)
T 2z63_A 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM----SEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGL-----SSLEV 449 (570)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESC----TTSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTC-----TTCCE
T ss_pred CCCCccccccccccccCCCCEEEccCCccccc----cchhhhhcCCCCCEEeCcCCcccc-cchhhhhcC-----CcCcE
Confidence 8877643 3366788888888843322111 012356788889977664332222 235566666 88999
Q ss_pred eEEEecCCC-ccHHHHHHHHhhhccCCeeEEeec
Q 011021 435 LELHTNVPL-SDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 435 L~l~~~~~~-~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
|++.+|.-. ...+ ..+-.+++|++|.+.+|
T Consensus 450 L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 450 LKMAGNSFQENFLP---DIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTCEEGGGEEC---SCCTTCTTCCEEECTTS
T ss_pred EECcCCcCccccch---hhhhcccCCCEEECCCC
Confidence 999887633 2233 33445678999999887
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=1.3e-13 Score=144.05 Aligned_cols=143 Identities=9% Similarity=0.046 Sum_probs=66.5
Q ss_pred hcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe------ccCCccceeeecccccc-----eEeecCC
Q 011021 306 SKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID------VDAPNLLLFTYEFNPIP-----IISINVP 371 (495)
Q Consensus 306 ~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~------~~~p~L~~l~~~~~~~~-----~~~~~~~ 371 (495)
..+++|+.|++++|...+.++ ...++|+.|.++++. ++.+. -..++|+.++++++.+. ..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 345666666666663332222 134566666666543 22211 23566666666665532 1234456
Q ss_pred CCceEEEEEecccchhhhcchHHHhccC-CccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCccHHHHH
Q 011021 372 CPWKVSFVCKGVLNTHWYLKLKKFLGVS-KQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLL 450 (495)
Q Consensus 372 ~L~~l~i~~~~~~~~~~~~~l~~~l~~l-~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~ 450 (495)
+|+.++++.+...+. .+ ..+ ++|+.|+++.+....+ |..+..+ ++|+.|++++|.-. .++.-
T Consensus 429 ~L~~L~l~~n~l~~~-----~~---~~l~~~L~~L~L~~N~l~~i--p~~~~~l-----~~L~~L~L~~N~l~-~l~~~- 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGS-----VF---RCLPPKVKVLDLHNNRIMSI--PKDVTHL-----QALQELNVASNQLK-SVPDG- 491 (562)
T ss_dssp TCCEEECCSSCCCGG-----GG---SSCCTTCSEEECCSSCCCCC--CTTTTSS-----CCCSEEECCSSCCC-CCCTT-
T ss_pred cCCEEECCCCCCCcc-----hh---hhhcCcCCEEECCCCcCccc--ChhhcCC-----CCCCEEECCCCCCC-CCCHH-
Confidence 666666643332111 11 112 4566555533332222 5544444 56666666665422 12110
Q ss_pred HHHhhhccCCeeEEeec
Q 011021 451 DCVFWICHPRTLRVNVM 467 (495)
Q Consensus 451 ~~l~~~~~l~~l~i~~~ 467 (495)
.+-.+++|++|.+.+.
T Consensus 492 -~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 492 -VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp -STTTCTTCCCEECCSC
T ss_pred -HHhcCCCCCEEEecCC
Confidence 1223455666666554
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=134.63 Aligned_cols=239 Identities=14% Similarity=0.061 Sum_probs=125.6
Q ss_pred ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc---eeecCCC
Q 011021 164 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH---LCVSKAS 238 (495)
Q Consensus 164 ~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~---~~i~~l~ 238 (495)
.+..+++|++|++++|.+.... .+.++++|++|+++++.++. .....+.++++|++|++++|....- ..+.+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence 4455666777777666654332 35566667777776666632 1122345666677776666643211 1233456
Q ss_pred CccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021 239 KLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 314 (495)
+|+.|++.+|. .+..+. ..+++|+.|+++.+......+..++.+++|++|+++++.++. ........+++|+.|
T Consensus 150 ~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 150 KLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECL 227 (353)
T ss_dssp TCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEE
T ss_pred CCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEE
Confidence 66666666653 222221 134556666665443322222334455566666666555533 122223345566666
Q ss_pred EecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHH
Q 011021 315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKK 394 (495)
Q Consensus 315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~ 394 (495)
++++|...+ +. .. .+ + .....+.++.+.+......+.. +..++.
T Consensus 228 ~L~~n~l~~-~~--~~--------------~l----~--------------~~~~~~~l~~l~L~~~~l~~~~-l~~l~~ 271 (353)
T 2z80_A 228 ELRDTDLDT-FH--FS--------------EL----S--------------TGETNSLIKKFTFRNVKITDES-LFQVMK 271 (353)
T ss_dssp EEESCBCTT-CC--CC--------------------------------------CCCCCCEEEEESCBCCHHH-HHHHHH
T ss_pred ECCCCcccc-cc--cc--------------cc----c--------------cccccchhhccccccccccCcc-hhhhHH
Confidence 665542110 00 00 00 0 0012345666666533332222 456788
Q ss_pred HhccCCccceEEEEEEecceeccccc-ccccCCCCCCccceeEEEecCCCccHHH
Q 011021 395 FLGVSKQIESLKLSLYSTKVLYNLDE-LSECSPSLPLQVENLELHTNVPLSDYET 448 (495)
Q Consensus 395 ~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 448 (495)
.++++++|+.|+++.+....+ |.. +..+ ++|++|++++|+-..+.+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i--~~~~~~~l-----~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSV--PDGIFDRL-----TSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCC--CTTTTTTC-----TTCCEEECCSSCBCCCHHH
T ss_pred HHhcccCCCEEECCCCCCCcc--CHHHHhcC-----CCCCEEEeeCCCccCcCCC
Confidence 889999999777754444433 655 4566 8999999999986666543
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=6.8e-14 Score=146.45 Aligned_cols=246 Identities=13% Similarity=0.071 Sum_probs=129.3
Q ss_pred CcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCc
Q 011021 162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL 240 (495)
Q Consensus 162 p~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L 240 (495)
|..+..+++|++|++++|.+...+ ....+ +|++|+++++.+.. ++ ...++.|++|.+.+|..........+++|
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCCC
Confidence 344444566666666666554433 33444 66666666666531 11 13566666666666654433333455666
Q ss_pred cEEEeccccccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021 241 KIMEIRSFSEEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (495)
Q Consensus 241 ~~L~i~~c~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 314 (495)
+.|++++|. +.... ..+++|++|+++++.... .+..++.+++|+.|+++++.++.......+..+++|+.|
T Consensus 350 ~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 350 EFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CEEeCcCCc--cCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 666666653 21111 134566666666333211 222255666666666666555432221223455666666
Q ss_pred EecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccc-----cceEeecCCCCceEEEEEecccchhhh
Q 011021 315 FVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNP-----IPIISINVPCPWKVSFVCKGVLNTHWY 389 (495)
Q Consensus 315 ~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~-----~~~~~~~~~~L~~l~i~~~~~~~~~~~ 389 (495)
++++|...+..+..+ -.+++|+.+++.++. +|..+..+++|+.|+++.+.. .
T Consensus 427 ~l~~n~l~~~~~~~~------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-----~ 483 (570)
T 2z63_A 427 DISHTHTRVAFNGIF------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-----E 483 (570)
T ss_dssp ECTTSCCEECCTTTT------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-----C
T ss_pred eCcCCcccccchhhh------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc-----c
Confidence 666653222111110 113344444444433 222344678888888854433 2
Q ss_pred cchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCCCc
Q 011021 390 LKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLS 444 (495)
Q Consensus 390 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~ 444 (495)
...+..++++++|+.|+++.+....+ .++.+..+ ++|+.|++++|+-..
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l-----~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRL-----TSLQKIWLHTNPWDC 532 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC-----TTCCEEECCSSCBCC
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcc-----cCCcEEEecCCcccC
Confidence 22366778889999777644333322 34556666 889999999887433
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=144.53 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=33.5
Q ss_pred cCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021 349 DAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 349 ~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
..++|++++++++.+. ..+.++++|+.|+++.+...+ +..++..++++++|+.|+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB---TTHHHHTTTTCTTCCEEECT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC---cccchhhhcCCCCCCEEECC
Confidence 3567777777776532 334567778887775433211 12344556777777766663
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=1.4e-13 Score=133.58 Aligned_cols=226 Identities=17% Similarity=0.099 Sum_probs=146.1
Q ss_pred CCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEE
Q 011021 168 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME 244 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~ 244 (495)
..++++|+|+++.+...+ ....+++|++|+|+++.++ .++..+.++++|++|++++|... .+ .+.++++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 378999999999987555 5677999999999999885 23344678999999999998643 32 234677888888
Q ss_pred eccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (495)
Q Consensus 245 i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 324 (495)
+++|. ....+. ..+....+. ..++++++|+.|+++++.++. +...+.++++|+.|++++|... .
T Consensus 157 L~~n~-~~~~~p---~~~~~~~~~---------~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 157 IRACP-ELTELP---EPLASTDAS---------GEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp EEEET-TCCCCC---SCSEEEC-C---------CCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEEESSCCC-C
T ss_pred CCCCC-CccccC---hhHhhccch---------hhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEccCCCCC-c
Confidence 88775 221111 111111111 124579999999999998873 2233678999999999988432 2
Q ss_pred ccc---cccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCc
Q 011021 325 IKI---SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQ 401 (495)
Q Consensus 325 i~~---~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~ 401 (495)
++. ..++|+.|++++|.....+ |..+.++++|+.|+++.+.. ...++..++++++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~-----------------p~~~~~l~~L~~L~L~~n~~-----~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNY-----------------PPIFGGRAPLKRLILKDCSN-----LLTLPLDIHRLTQ 278 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBC-----------------CCCTTCCCCCCEEECTTCTT-----CCBCCTTGGGCTT
T ss_pred CchhhccCCCCCEEECcCCcchhhh-----------------HHHhcCCCCCCEEECCCCCc-----hhhcchhhhcCCC
Confidence 221 2345555555555433221 12233577888888854444 3456666788888
Q ss_pred cceEEEEEEecceecccccccccCCCCCCccceeEEEec
Q 011021 402 IESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTN 440 (495)
Q Consensus 402 L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~ 440 (495)
|+.|+++.+.... ..|+.++++ ++++.+.+..+
T Consensus 279 L~~L~L~~n~~~~-~iP~~l~~L-----~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLS-RLPSLIAQL-----PANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCC-CCCGGGGGS-----CTTCEEECCGG
T ss_pred CCEEeCCCCCchh-hccHHHhhc-----cCceEEeCCHH
Confidence 8866664322111 347777777 77777766643
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=6.9e-14 Score=136.13 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=157.4
Q ss_pred cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecc
Q 011021 170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRS 247 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~ 247 (495)
+++.++++++.+...+ ..-.++|+.|+++++.++.-. ...+.++++|++|++++|..... ..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-KEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCC-SCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccC-CCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4666666666654433 112356777777766653211 11245667777777776653211 1234566777777766
Q ss_pred ccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH-HHHHHhhcCCCCcEEEecCCCCCccc
Q 011021 248 FSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKI 325 (495)
Q Consensus 248 c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~i 325 (495)
+. +..+.. ..++|++|+++.+.........++++++|+.|+++++.++.. .....+..+ +|+.|++++|.. ..+
T Consensus 112 n~--l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l 187 (332)
T 2ft3_A 112 NH--LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGI 187 (332)
T ss_dssp SC--CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSC
T ss_pred Cc--CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-Ccc
Confidence 64 211111 126777777774443322222355678888888887776531 111122233 778888877632 223
Q ss_pred cc-cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021 326 KI-SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL 396 (495)
Q Consensus 326 ~~-~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l 396 (495)
+. .+++|+.|.++++. +..+. ..+++|+.++++++.+. ..+..+++|+.|+++.+. +..++..+
T Consensus 188 ~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~lp~~l 260 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK------LSRVPAGL 260 (332)
T ss_dssp CSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC------CCBCCTTG
T ss_pred CccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc------CeecChhh
Confidence 32 23577777776653 22221 23678888888887643 245678899999996443 34567778
Q ss_pred ccCCccceEEEEEEecceecccccccccCC-CCCCccceeEEEecCCC--ccHHHHHHHHhhhccCCeeEEeec
Q 011021 397 GVSKQIESLKLSLYSTKVLYNLDELSECSP-SLPLQVENLELHTNVPL--SDYETLLDCVFWICHPRTLRVNVM 467 (495)
Q Consensus 397 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~-~~p~~L~~L~l~~~~~~--~~~~~l~~~l~~~~~l~~l~i~~~ 467 (495)
..+++|+.|+++......+ .++.+....+ ...+.++.|.+.+|+-. ...+ ..+..+++|+.+.+.++
T Consensus 261 ~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred hcCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence 8999999777744333322 3344433200 01267889999998743 2222 33344667888887654
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1.6e-13 Score=133.46 Aligned_cols=281 Identities=13% Similarity=0.046 Sum_probs=141.3
Q ss_pred cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecc
Q 011021 170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRS 247 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~ 247 (495)
+++.++++++.+...+ ..-.++|+.|+++++.+++-. ...+.++++|++|++++|..... ..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccC-ccCCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3455555544443322 111245555555555442110 01134455555555555432111 1223445555555555
Q ss_pred ccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH-HHHHHhhcCCCCcEEEecCCCCCccc
Q 011021 248 FSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKI 325 (495)
Q Consensus 248 c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~i 325 (495)
+. +..+.. ..++|++|+++.+.........++++++|+.|+++++.+... .....+..+++|+.|++.+|.. ..+
T Consensus 110 n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l 186 (330)
T 1xku_A 110 NQ--LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTI 186 (330)
T ss_dssp SC--CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSC
T ss_pred Cc--CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccC
Confidence 43 111111 124666666663333222222345677777777777666431 1122345677777777776632 222
Q ss_pred cc-cccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021 326 KI-SSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL 396 (495)
Q Consensus 326 ~~-~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l 396 (495)
+. ..++|+.|.++++. +..+. -.+++|++++++++.+. ..+..+++|++|+++.+. +..++..+
T Consensus 187 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~------l~~lp~~l 259 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK------LVKVPGGL 259 (330)
T ss_dssp CSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC------CSSCCTTT
T ss_pred CccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc------CccCChhh
Confidence 22 23567777776654 33332 13667777887777643 235568899999996443 34566778
Q ss_pred ccCCccceEEEEEEecceecccccccccCC-CCCCccceeEEEecCCCc-cHHHHHHHHhhhccCCeeEEe
Q 011021 397 GVSKQIESLKLSLYSTKVLYNLDELSECSP-SLPLQVENLELHTNVPLS-DYETLLDCVFWICHPRTLRVN 465 (495)
Q Consensus 397 ~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~-~~p~~L~~L~l~~~~~~~-~~~~l~~~l~~~~~l~~l~i~ 465 (495)
..+++|+.|+++......+ .+..+..... ...+.++.|++.+|+-.. ..+. .....+.+++.+.+.
T Consensus 260 ~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLG 327 (330)
T ss_dssp TTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC-
T ss_pred ccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeEEEec
Confidence 8899999776643333322 2333322100 112678888898887322 1110 223334467777664
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=6e-14 Score=135.63 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=111.1
Q ss_pred CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~ 246 (495)
++|++|++++|.+...+ .+..+++|++|+|+++.+++.. . +..++.|++|++++|. +..+. ..++|+.|++.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc--CCCCcCEEECC
Confidence 34555555555443322 2344555555555554441100 0 3445555555555443 11111 12455555555
Q ss_pred cccccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021 247 SFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 325 (495)
Q Consensus 247 ~c~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i 325 (495)
+|. +..+. ...++|+.|+++.+......+..++.+++|+.|+++++.+++.....+...+++|+.|++++|.. ..+
T Consensus 108 ~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~ 184 (317)
T 3o53_A 108 NNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDV 184 (317)
T ss_dssp SSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEE
T ss_pred CCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC-ccc
Confidence 543 22221 13455666666544433333334455667777777766665533333334566777777776632 222
Q ss_pred c--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHhc
Q 011021 326 K--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLG 397 (495)
Q Consensus 326 ~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~ 397 (495)
+ ...++|+.|+++++. +..+. ...++|+.++++++.+. ..+..+++|+.++++.+... -..++.++.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~----~~~~~~~~~ 259 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH----CGTLRDFFS 259 (317)
T ss_dssp ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB----HHHHHHHHH
T ss_pred ccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc----CcCHHHHHh
Confidence 1 124566666666543 22332 12556666666666532 22345677888887433321 124566777
Q ss_pred cCCccceEEE
Q 011021 398 VSKQIESLKL 407 (495)
Q Consensus 398 ~l~~L~~L~l 407 (495)
.++.|+.+++
T Consensus 260 ~~~~L~~l~l 269 (317)
T 3o53_A 260 KNQRVQTVAK 269 (317)
T ss_dssp TCHHHHHHHH
T ss_pred ccccceEEEC
Confidence 7777775544
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.40 E-value=2.9e-14 Score=137.57 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=33.8
Q ss_pred cCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021 369 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 369 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
.+++|++|+++.+.. ...++..+.++++|+.|+++...... ..|+. ..+ ++|+.|++.+|+
T Consensus 242 ~l~~L~~L~Ls~N~l-----~~~~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~-~~l-----~~L~~l~l~~N~ 302 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRI-----YGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQG-GNL-----QRFDVSAYANNK 302 (313)
T ss_dssp CCTTCCEEECCSSCC-----EECCCGGGGGCTTCCEEECCSSEEEE-ECCCS-TTG-----GGSCGGGTCSSS
T ss_pred ccCCCCEEECcCCcc-----cCcCChHHhcCcCCCEEECcCCcccc-cCCCC-ccc-----cccChHHhcCCC
Confidence 456777777754333 22356667777777766664322221 12333 444 667777777665
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1.1e-13 Score=141.82 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=145.9
Q ss_pred CCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i 245 (495)
+++|++|+|++|.+...+ .+..+++|++|+|++|.+++.. + +..++.|++|++++|. +..+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence 347888888887765543 4567788888888877763211 1 5677888888888774 23322 2378888888
Q ss_pred ccccccceEEE-EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021 246 RSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (495)
Q Consensus 246 ~~c~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 324 (495)
++|. +..+. ...++|+.|+++++......+..++.+++|+.|++++|.+++..+..+...+++|+.|++++|.. ..
T Consensus 107 ~~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~ 183 (487)
T 3oja_A 107 ANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD 183 (487)
T ss_dssp CSSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred cCCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-cc
Confidence 8775 22222 24678888888866555544556677888888888888877654444445678888888888743 22
Q ss_pred cc--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEEEecccchhhhcchHHHh
Q 011021 325 IK--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL 396 (495)
Q Consensus 325 i~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l 396 (495)
++ ...++|+.|+++++. +..+. ..+++|+.++++++.+. ..+..+++|+.++++.+... -..++.++
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~----c~~~~~~~ 258 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH----CGTLRDFF 258 (487)
T ss_dssp EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC----HHHHHHHH
T ss_pred ccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc----CcchHHHH
Confidence 21 135678888887764 33332 23677888888877643 23456778888888533321 12456777
Q ss_pred ccCCccceEEE
Q 011021 397 GVSKQIESLKL 407 (495)
Q Consensus 397 ~~l~~L~~L~l 407 (495)
..++.|+.+.+
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 77777775443
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.5e-12 Score=136.43 Aligned_cols=259 Identities=15% Similarity=0.060 Sum_probs=183.9
Q ss_pred CcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c 248 (495)
.++++|+++++.+...+. .-.++|++|+|++|.++. ++ ..+++|++|++++|. ++.++. .+++|+.|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CSCCCC-CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCC--CC---CcCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECcCC
Confidence 468999999998876542 123899999999998842 22 268999999999997 444443 6799999999988
Q ss_pred cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccccc
Q 011021 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS 328 (495)
Q Consensus 249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~~ 328 (495)
. +..+....++|+.|+++.+.... .+. .+++|++|++++|.++. +...+++|+.|.+.+|. +..++..
T Consensus 112 ~--l~~l~~~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~-l~~l~~~ 179 (622)
T 3g06_A 112 P--LTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQ-LTSLPML 179 (622)
T ss_dssp C--CCCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCC
T ss_pred c--CCCCCCCCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCC-CCCCccc
Confidence 5 33333367899999998554422 222 35899999999998765 12356899999999873 4456666
Q ss_pred ccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEE
Q 011021 329 SNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS 408 (495)
Q Consensus 329 ~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~ 408 (495)
+++|+.|+++++. +..+....++|+.+.+.++.+......+++|+.|+++.+. +..++ ..+++|+.|+++
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~------L~~lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR------LTSLP---VLPSELKELMVS 249 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC------CSCCC---CCCTTCCEEECC
T ss_pred CCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc------cCcCC---CCCCcCcEEECC
Confidence 7899999998864 5555445788999999988765211245789999996443 33344 567889977774
Q ss_pred EEecceecccccccccCCCCCCccceeEEEecCCCccHHHHHHHHhhhccCCeeEEeeccccc
Q 011021 409 LYSTKVLYNLDELSECSPSLPLQVENLELHTNVPLSDYETLLDCVFWICHPRTLRVNVMFEED 471 (495)
Q Consensus 409 ~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~l~~~l~~~~~l~~l~i~~~~~~~ 471 (495)
.+....+ |. . +++|+.|++++|.-. .+| ..+..+++|+.|.+.++.+..
T Consensus 250 ~N~L~~l--p~---~-----~~~L~~L~Ls~N~L~-~lp---~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 250 GNRLTSL--PM---L-----PSGLLSLSVYRNQLT-RLP---ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCSCC--CC---C-----CTTCCEEECCSSCCC-SCC---GGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCCcC--Cc---c-----cccCcEEeCCCCCCC-cCC---HHHhhccccCEEEecCCCCCC
Confidence 4433332 33 2 278999999988633 344 445567899999998885443
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=2.3e-13 Score=132.25 Aligned_cols=266 Identities=12% Similarity=0.027 Sum_probs=146.4
Q ss_pred cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK 236 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~ 236 (495)
..+|..+. ++|++|++++|.+...+ .+.++++|++|+|+++.++.-. ...+.++++|++|++++|.. ..+...-
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~~ 119 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEKM 119 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSSC
T ss_pred cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChhh
Confidence 34554432 57778888887765543 4567788888888877763211 12255777888888877753 3333232
Q ss_pred CCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCC--ceeEEeecCCCccEEEeeccccChHHHHHHhhcCCC
Q 011021 237 ASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310 (495)
Q Consensus 237 l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 310 (495)
.++|+.|++.++. +..+. ..+++|+.|+++.+.... ..+..++++++|+.|+++++.++.- .. ..+++
T Consensus 120 ~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--~~--~~~~~ 193 (330)
T 1xku_A 120 PKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--PQ--GLPPS 193 (330)
T ss_dssp CTTCCEEECCSSC--CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--CS--SCCTT
T ss_pred cccccEEECCCCc--ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC--Cc--ccccc
Confidence 3677888877764 22211 145777777777443321 1223355677888888877776541 00 12367
Q ss_pred CcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEeecCCCCceEEEEE
Q 011021 311 LEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVC 380 (495)
Q Consensus 311 L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~ 380 (495)
|+.|++++|...+..+ ...++|+.|+++++. +..+. -.+++|+.++++++.+. ..+..+++|+.|+++.
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC
Confidence 8888887764222111 134677777777654 33332 13677888888777643 3345678888888864
Q ss_pred ecccchhhhcch--HHHhccCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC
Q 011021 381 KGVLNTHWYLKL--KKFLGVSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 381 ~~~~~~~~~~~l--~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
+....-. ...+ .......+.|+.+++........ ..|..+... ++++.+++++|+
T Consensus 273 N~i~~~~-~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~-----~~l~~l~L~~N~ 330 (330)
T 1xku_A 273 NNISAIG-SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV-----YVRAAVQLGNYK 330 (330)
T ss_dssp SCCCCCC-TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC-----CCGGGEEC----
T ss_pred CcCCccC-hhhcCCcccccccccccceEeecCcccccccCccccccc-----cceeEEEecccC
Confidence 4322110 0000 00112246677555532222221 345566555 888888888763
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=1.7e-13 Score=131.74 Aligned_cols=222 Identities=17% Similarity=0.106 Sum_probs=143.0
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChH-HHHHHHhcCCCccEEEEEecCCCcc-e
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-L 232 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~l~~-~ 232 (495)
.-..+|..+. ++|++|++++|.+...+ .+.++++|++|+|+++.++.. .....+.+++.|++|++++|..... .
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~ 95 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh
Confidence 3445665443 68999999999877554 357899999999999887421 1112244789999999998864221 1
Q ss_pred eecCCCCccEEEecccc-ccceE--EEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021 233 CVSKASKLKIMEIRSFS-EEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP 309 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~-~~l~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (495)
.+.++++|+.|++.++. ..... .....++|++|+++.+......+..++.+++|+.|+++++.+++......+..++
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 24568899999998875 11111 1124678999988844432222233557889999999888876533334456788
Q ss_pred CCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecC-CCCceEE
Q 011021 310 SLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINV-PCPWKVS 377 (495)
Q Consensus 310 ~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~-~~L~~l~ 377 (495)
+|+.|++++|...+..+ ...++|+.|.++++.- ..+. -.+++|+.++++++.+. ..+..+ ++|+.|+
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 99999998874322212 2356788888877652 2221 23678888888887743 234445 4888888
Q ss_pred EEEe
Q 011021 378 FVCK 381 (495)
Q Consensus 378 i~~~ 381 (495)
++.+
T Consensus 255 L~~N 258 (306)
T 2z66_A 255 LTQN 258 (306)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 8533
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=3.9e-13 Score=129.90 Aligned_cols=233 Identities=13% Similarity=0.005 Sum_probs=145.3
Q ss_pred ceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccc
Q 011021 171 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (495)
Q Consensus 171 L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c 248 (495)
++..+++.+.+.... ....+++|++|+|+++.++.-. ...+.++++|++|++++|...+...+.++++|+.|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 344444444443222 2345789999999999885322 2346789999999999997655556778899999999988
Q ss_pred cccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc--
Q 011021 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-- 326 (495)
Q Consensus 249 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~-- 326 (495)
. +..+. ..++|+.|+++.+... ......+++|+.|+++++.++.... ..+..+++|+.|++++|.......
T Consensus 91 ~--l~~l~-~~~~L~~L~l~~n~l~---~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 91 Y--VQELL-VGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp E--EEEEE-ECTTCCEEECCSSCCS---EEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred c--ccccc-CCCCcCEEECCCCccC---CcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHH
Confidence 4 44443 3589999999854442 2233457889999999888776221 123467889999998874322111
Q ss_pred --ccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccce
Q 011021 327 --ISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIES 404 (495)
Q Consensus 327 --~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~ 404 (495)
...++|+.|.++++. +..+. ....+++|+.|+++.+. +..++..+..+++|+.
T Consensus 164 ~~~~l~~L~~L~L~~N~-l~~~~------------------~~~~l~~L~~L~Ls~N~------l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNF-IYDVK------------------GQVVFAKLKTLDLSSNK------LAFMGPEFQSAAGVTW 218 (317)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEE------------------CCCCCTTCCEEECCSSC------CCEECGGGGGGTTCSE
T ss_pred HhhccCcCCEEECCCCc-Ccccc------------------cccccccCCEEECCCCc------CCcchhhhcccCcccE
Confidence 123455555555443 22211 11135677777774333 2233444667778886
Q ss_pred EEEEEEecceecccccccccCCCCCCccceeEEEecCCC
Q 011021 405 LKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVPL 443 (495)
Q Consensus 405 L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~~ 443 (495)
|+++.+....+ |+.+... ++|+.|++++|+-.
T Consensus 219 L~L~~N~l~~l--~~~~~~l-----~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 219 ISLRNNKLVLI--EKALRFS-----QNLEHFDLRGNGFH 250 (317)
T ss_dssp EECTTSCCCEE--CTTCCCC-----TTCCEEECTTCCCB
T ss_pred EECcCCcccch--hhHhhcC-----CCCCEEEccCCCcc
Confidence 66644433333 6666555 78888888887754
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.34 E-value=4e-12 Score=128.91 Aligned_cols=268 Identities=16% Similarity=0.093 Sum_probs=163.1
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+.. ..+| .+..+++|++|++++|.+...+ ...++|++|+++++.++. ++. +.+++.|++|
T Consensus 131 ~~L~~L~--L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLG--VSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAI 200 (454)
T ss_dssp TTCCEEE--CCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEE
Confidence 4788888 544332 3467 5788999999999999887533 234699999999998843 222 6789999999
Q ss_pred EEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH
Q 011021 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (495)
Q Consensus 222 ~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 300 (495)
++++|...+ +.. ..++|+.|++++|. ..+.. ....++|++|+++++.... .+ ...++|+.|+++++.+++
T Consensus 201 ~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~N~l~~-- 271 (454)
T 1jl5_A 201 YADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-- 271 (454)
T ss_dssp ECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC--
T ss_pred ECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cc---ccccccCEEECCCCcccc--
Confidence 999986432 211 23689999999886 22222 1267889999998554422 11 135789999999988765
Q ss_pred HHHHhhcCCCCcEEEecCCCCCccccccccccceEEeccCCCccEEeccCCccceeeecccccceEeecCCCCceEEEEE
Q 011021 301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVC 380 (495)
Q Consensus 301 ~~~l~~~~~~L~~L~L~~~~~~~~i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~ 380 (495)
+....++|+.|++++|. +..++...++|+.|+++++. +..+.--.++|+.++++++.+...-..+++|+.++++.
T Consensus 272 ---l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 272 ---LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASF 346 (454)
T ss_dssp ---CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred ---cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCC
Confidence 22345789999999874 33333334688999888764 44443223588888888877541111357899999854
Q ss_pred ecccchhhhcchHHHhccCCccceEEEEEEeccee-ccccccccc--------CCCCCCccceeEEEecCC
Q 011021 381 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVL-YNLDELSEC--------SPSLPLQVENLELHTNVP 442 (495)
Q Consensus 381 ~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~~--------~~~~p~~L~~L~l~~~~~ 442 (495)
+. +..++. .+++|+.|+++......+ ..|..+..+ .+..|++|+.|++++|+-
T Consensus 347 N~------l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 347 NH------LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp SC------CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred Cc------cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 43 233444 467888777754333322 124444322 001125677777777663
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.31 E-value=8.2e-13 Score=133.72 Aligned_cols=89 Identities=18% Similarity=0.069 Sum_probs=60.9
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-- 232 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~-- 232 (495)
.-..+|..+. ++++.|+|++|.+.... .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l-~~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRL-TTIPN 129 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCC-SSCCT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcC-CeeCH
Confidence 4456676554 67899999998876433 5678899999999988773211 12356788899999988853 222
Q ss_pred -eecCCCCccEEEecccc
Q 011021 233 -CVSKASKLKIMEIRSFS 249 (495)
Q Consensus 233 -~i~~l~~L~~L~i~~c~ 249 (495)
.+.++++|+.|++.++.
T Consensus 130 ~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp TTSCSCSSCCEEECCSCC
T ss_pred hHhhccccCceeeCCCCc
Confidence 23456777777777663
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=8.3e-13 Score=128.48 Aligned_cols=263 Identities=11% Similarity=0.005 Sum_probs=143.4
Q ss_pred cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK 236 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~ 236 (495)
..+|..+. ++|++|++++|.+...+ .+.++++|++|+++++.++.-. ...+.+++.|++|++++|.. ..++..-
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL 121 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc
Confidence 35555443 57788888877765432 4567788888888877763211 12256778888888877753 2332222
Q ss_pred CCCccEEEecccc-ccceEE-EEeCCcceEEEEeecCCCC--ceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021 237 ASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (495)
Q Consensus 237 l~~L~~L~i~~c~-~~l~~~-~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 312 (495)
.++|++|++.++. ..+..- ...+++|+.|+++.+.... ..+..++.+ +|+.|+++++.++. +.. ..+++|+
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~--~~~~~L~ 196 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPK--DLPETLN 196 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--CCS--SSCSSCS
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--cCc--cccCCCC
Confidence 3678888887764 111111 1246778888777443311 112223344 77777777777654 110 1235777
Q ss_pred EEEecCCCCCccc---cccccccceEEeccCCCccEEe----ccCCccceeeecccccc---eEeecCCCCceEEEEEec
Q 011021 313 DLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKG 382 (495)
Q Consensus 313 ~L~L~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~ 382 (495)
.|++++|...+.. ....++|+.|+++++. +..+. -.+++|+.++++++.+. ..+..+++|+.++++.+.
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 7777776322211 1234567777776653 22221 23677777777776643 335577889988886443
Q ss_pred ccchhhhcchHHHhc------cCCccceEEEEEEeccee-cccccccccCCCCCCccceeEEEecC
Q 011021 383 VLNTHWYLKLKKFLG------VSKQIESLKLSLYSTKVL-YNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 383 ~~~~~~~~~l~~~l~------~l~~L~~L~l~~~~~~~~-~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
.... -+..+. ..+.|+.+++........ ..|..+..+ ++++.+.+.+|+
T Consensus 276 l~~~-----~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l-----~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKV-----GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV-----TDRLAIQFGNYK 331 (332)
T ss_dssp CCBC-----CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB-----CCSTTEEC----
T ss_pred CCcc-----ChhHccccccccccccccceEeecCcccccccCccccccc-----chhhhhhccccc
Confidence 2211 011111 245677555533322211 345566666 888888888765
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=2.3e-12 Score=130.96 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=57.0
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--- 232 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--- 232 (495)
-..+|..+. +++++|+|++|.+.... .+.++++|++|+|+++.++.-. ...+.++++|++|+|++|.. ..+
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~ 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSG 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChh
Confidence 345665443 67888888888775432 5677888888888888773211 12356788888888888753 222
Q ss_pred eecCCCCccEEEecccc
Q 011021 233 CVSKASKLKIMEIRSFS 249 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~ 249 (495)
.+.++++|+.|+++++.
T Consensus 142 ~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP 158 (452)
T ss_dssp TSSSCTTCCEEECCSCC
T ss_pred hhcccCCCCEEECCCCC
Confidence 13356677777777663
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.27 E-value=1.2e-12 Score=126.11 Aligned_cols=215 Identities=15% Similarity=0.079 Sum_probs=92.8
Q ss_pred ccCcccccCCcceEEEEec-cccCCC-C-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--ee
Q 011021 160 TLPQAIFSANSVTNLRLVW-CRLEQP-F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CV 234 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~-c~l~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i 234 (495)
.+|..+..+++|++|++++ +.+... + .+..+++|++|+|+++.++.. +...+.++++|++|++++|...+.. .+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 3455555555555555553 433211 1 344555555555555554211 1112345555555555555322111 12
Q ss_pred cCCCCccEEEeccccccce-EEE---EeCC-cceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021 235 SKASKLKIMEIRSFSEEIE-IVE---ISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP 309 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~~~l~-~~~---~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (495)
.++++|+.|++.+|. +. .+. ...+ +|+.|+++.+...+..+..++.++ |+.|+++++.+++.. ...+..++
T Consensus 146 ~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l~ 221 (313)
T 1ogq_A 146 SSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDK 221 (313)
T ss_dssp GGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTTS
T ss_pred hcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcCC
Confidence 344555555555553 11 111 0222 555555553222211222233333 555555555544321 12234455
Q ss_pred CCcEEEecCCCCCcccc--ccccccceEEeccCCCccEEe---ccCCccceeeecccccc---eEeecCCCCceEEEE
Q 011021 310 SLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFV 379 (495)
Q Consensus 310 ~L~~L~L~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~l~---~~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~i~ 379 (495)
+|+.|++++|.....++ ...++|+.|+++++.--..+. ...++|+.++++++.+. .....+++|+.+++.
T Consensus 222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 56666555553221111 123455555555543211111 12455666666655432 111345556665553
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=1.5e-12 Score=125.06 Aligned_cols=239 Identities=14% Similarity=0.044 Sum_probs=127.7
Q ss_pred eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc----eeecCCCCccEEEecc
Q 011021 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRS 247 (495)
Q Consensus 172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----~~i~~l~~L~~L~i~~ 247 (495)
+.++.++..+...+ ..-.++|++|+|+++.++. .....+.++++|++|++++|..... ....++++|+.|++++
T Consensus 10 ~~l~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCC-CCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45666666665543 2334799999999998842 1123357899999999998864321 1222568888888887
Q ss_pred cc-ccceEEEEeCCcceEEEEeecCCCCcee-EEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc-c
Q 011021 248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-K 324 (495)
Q Consensus 248 c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~-~ 324 (495)
|. ..+.......++|++|+++.+....... ..+..+++|+.|+++++.++... ...+..+++|+.|++.+|...+ .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCcccccc
Confidence 74 1111112245666666665322211000 12344566666666655544311 1123445666666666552211 0
Q ss_pred ccccccccceEEeccCCCccEEeccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcchHHHhccCC
Q 011021 325 IKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSK 400 (495)
Q Consensus 325 i~~~~~~L~~L~l~~c~~l~~l~~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~ 400 (495)
++.. .-..++|++++++++.+. ..+..+++|+.|+++.+... ...+..+..++
T Consensus 167 ~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~ 223 (306)
T 2z66_A 167 LPDI------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLN 223 (306)
T ss_dssp ECSC------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-----BCCSGGGTTCT
T ss_pred chhH------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-----ccChhhccCcc
Confidence 1110 012344444454444422 12345678888888533321 11223467788
Q ss_pred ccceEEEEEEecceecccccccccCCCCCCccceeEEEecC
Q 011021 401 QIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNV 441 (495)
Q Consensus 401 ~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~ 441 (495)
+|+.|+++...... ..+..+... |++|+.|++++|+
T Consensus 224 ~L~~L~L~~N~l~~-~~~~~~~~~----~~~L~~L~L~~N~ 259 (306)
T 2z66_A 224 SLQVLDYSLNHIMT-SKKQELQHF----PSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSCCCB-CSSSSCCCC----CTTCCEEECTTCC
T ss_pred cCCEeECCCCCCcc-cCHHHHHhh----hccCCEEEccCCC
Confidence 88876664332222 234555443 3489999999887
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=2.6e-12 Score=131.60 Aligned_cols=216 Identities=13% Similarity=0.021 Sum_probs=139.7
Q ss_pred cCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEE
Q 011021 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL 267 (495)
Q Consensus 188 ~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l 267 (495)
..+++|++|+|+++.++.- ....+..+++|++|+|++|...+..++.++++|+.|++++|. +..+. ..++|+.|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~--l~~l~-~~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY--VQELL-VGPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE--EEEEE-ECTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc--CCCCC-CCCCcCEEEC
Confidence 3566999999999988432 123467899999999999986555567788999999999884 44443 3489999999
Q ss_pred eecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc----cccccceEEeccCCCc
Q 011021 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCKYL 343 (495)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~~l 343 (495)
+++.... .....+++|+.|+++++.+++... ..+..+++|+.|++++|...+..+. ..++|+.|+++++. +
T Consensus 107 ~~N~l~~---~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l 181 (487)
T 3oja_A 107 ANNNISR---VSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-I 181 (487)
T ss_dssp CSSCCCC---EEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-C
T ss_pred cCCcCCC---CCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-c
Confidence 8555432 222457899999999998876322 1235678999999998743332221 23455555555443 2
Q ss_pred cEEeccCCccceeeecccccceEeecCCCCceEEEEEecccchhhhcchHHHhccCCccceEEEEEEecceecccccccc
Q 011021 344 KVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVLYNLDELSE 423 (495)
Q Consensus 344 ~~l~~~~p~L~~l~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~ 423 (495)
..+. ....+++|+.|+++.+.. ..++..+..+++|+.|+++.+....+ |..+..
T Consensus 182 ~~~~------------------~~~~l~~L~~L~Ls~N~l------~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~ 235 (487)
T 3oja_A 182 YDVK------------------GQVVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLVLI--EKALRF 235 (487)
T ss_dssp CEEE------------------CCCCCTTCCEEECCSSCC------CEECGGGGGGTTCSEEECTTSCCCEE--CTTCCC
T ss_pred cccc------------------ccccCCCCCEEECCCCCC------CCCCHhHcCCCCccEEEecCCcCccc--chhhcc
Confidence 2111 111366777777753332 23344467777888666644333333 666655
Q ss_pred cCCCCCCccceeEEEecCCC
Q 011021 424 CSPSLPLQVENLELHTNVPL 443 (495)
Q Consensus 424 ~~~~~p~~L~~L~l~~~~~~ 443 (495)
+ ++|+.|++.+|+-.
T Consensus 236 l-----~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 S-----QNLEHFDLRGNGFH 250 (487)
T ss_dssp C-----TTCCEEECTTCCBC
T ss_pred C-----CCCCEEEcCCCCCc
Confidence 5 77888888877644
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=8.5e-12 Score=119.93 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=89.8
Q ss_pred HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
..++++|+ +..+. ...+| .+..+++|++|++++|.+...+....+++|++|+++++.+++- . .+..++.|++
T Consensus 40 l~~L~~L~--l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLS--AFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEE--CTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCE
T ss_pred cCCcCEEE--eeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCE
Confidence 35677777 54322 22344 4556777888888877765544466777788888877777321 1 2566777777
Q ss_pred EEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (495)
Q Consensus 221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (495)
|++++|..-....+..+++|+.|++++|. ..+.. ...+++|+.|+++.+....... +..+++|+.|+++++.+++.
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 77777764332234556677777776664 11111 1134555555555333221111 34455555555555554431
Q ss_pred HHHHHhhcCCCCcEEEecCC
Q 011021 300 EFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 300 ~~~~l~~~~~~L~~L~L~~~ 319 (495)
.. +..+++|+.|++++|
T Consensus 189 ~~---l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 189 SP---LASLPNLIEVHLKNN 205 (308)
T ss_dssp GG---GGGCTTCCEEECTTS
T ss_pred hh---hcCCCCCCEEEccCC
Confidence 11 344555555555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=3.1e-13 Score=130.30 Aligned_cols=171 Identities=18% Similarity=0.129 Sum_probs=98.4
Q ss_pred CCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHH-------HhcCCCccEEEEEecCCCcce--ee--cC
Q 011021 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKL-------ASECPLLEDLCFSNCWGLKHL--CV--SK 236 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------~~~~p~Le~L~L~~c~~l~~~--~i--~~ 236 (495)
.++|++|++++|.+..+.... ..|+.|+|+++.+....+... ..+++.|++|++++|...+.. .+ ..
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 355667777777662211112 227777777776621111111 126788888888888643222 11 45
Q ss_pred CCCccEEEecccc-ccceEEEEe-----CCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHH--HHHH-hhc
Q 011021 237 ASKLKIMEIRSFS-EEIEIVEIS-----VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE--FNHL-ISK 307 (495)
Q Consensus 237 l~~L~~L~i~~c~-~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l-~~~ 307 (495)
+++|+.|+++++. .+....... .++|++|+++++......+..++.+++|+.|+++++.+.+.. +..+ ...
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 7888888888775 111110011 278888888865554333345667889999999988876532 2222 267
Q ss_pred CCCCcEEEecCCCCCc--cccc----cccccceEEeccC
Q 011021 308 FPSLEDLFVTRCCLPG--KIKI----SSNQLKNLLFRSC 340 (495)
Q Consensus 308 ~~~L~~L~L~~~~~~~--~i~~----~~~~L~~L~l~~c 340 (495)
+++|+.|++++|...+ .+.. ..++|+.|+++++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 8899999998874221 1111 2245666665554
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.20 E-value=2.9e-11 Score=116.13 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=120.8
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~ 246 (495)
.+++|++|++++|.+...+....+++|++|+++++.+++-. . +.++++|++|++++|..-....+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 35678888888887765555667888888888888773211 2 67788888888888864332234567888888888
Q ss_pred ccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCccc
Q 011021 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI 325 (495)
Q Consensus 247 ~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i 325 (495)
+|. ..+.. ...+++|+.|+++.+...... .++.+++|+.|+++++.+++-. . +..+++|+.|++++|.. ..+
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~ 188 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKI-SDI 188 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCC
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCcc-CcC
Confidence 775 22211 124678888888754443221 1567788888888888776522 1 56778888888887732 222
Q ss_pred c--ccccccceEEeccCCCccEEe-ccCCccceeeeccccc
Q 011021 326 K--ISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFNPI 363 (495)
Q Consensus 326 ~--~~~~~L~~L~l~~c~~l~~l~-~~~p~L~~l~~~~~~~ 363 (495)
. ...++|+.|.++++.--.... ..+++|+.++++++.+
T Consensus 189 ~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 1 245678888887764221111 2367788888877653
No 69
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=1.2e-12 Score=130.04 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=74.2
Q ss_pred cccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEeeC---h---HH---HHHHHhcCCCccEEEE
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD---E---QM---VQKLASECPLLEDLCF 223 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~~~---~---~~---l~~l~~~~p~Le~L~L 223 (495)
..++..+..+++|++|+|++|.+.... ....+++|++|+|+++.+. + .. +...+..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 344444555566666666666554321 2335666666666665331 1 11 1222345666666666
Q ss_pred EecCCCcc----e--eecCCCCccEEEecccccc---ceEEE---EeC---------CcceEEEEeecCCC-Ccee---E
Q 011021 224 SNCWGLKH----L--CVSKASKLKIMEIRSFSEE---IEIVE---ISV---------PSLQQLTLLFYGAR-RPRV---V 278 (495)
Q Consensus 224 ~~c~~l~~----~--~i~~l~~L~~L~i~~c~~~---l~~~~---~~~---------p~L~~L~l~~~~~~-~~~~---~ 278 (495)
++|..... + .+..+++|++|++++|.-. ...+. ... ++|++|+++++... ...+ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 66653220 1 1224456666666555300 00000 001 45555555533322 1111 1
Q ss_pred EeecCCCccEEEeeccccChHHHHH----HhhcCCCCcEEEecCC
Q 011021 279 EVARSPHLKKLDLVSVYFADNEFNH----LISKFPSLEDLFVTRC 319 (495)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~~L~~L~L~~~ 319 (495)
.+..+++|++|++++|.+++..... .+..+++|+.|+|++|
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence 2334556666666666555433222 2335556666666555
No 70
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=1.1e-11 Score=117.82 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=98.8
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--- 232 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--- 232 (495)
-..+|..+ .++|++|+++++.+...+ .+..+++|++|+++++.++.-. ...+.+++.|++|++++|..++.+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 34555433 368999999998876543 4678899999999988774221 223567899999999998744443
Q ss_pred eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021 233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 308 (495)
.+.++++|+.|++.+|. +..+. ..+++|++|+++++.........++.+++|+.|+++++.++... ...+..+
T Consensus 100 ~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l 176 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGL 176 (285)
T ss_dssp TTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTC
T ss_pred HhcCCcCCCEEECCCCc--CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCc
Confidence 33467888888888875 22111 13567777777644332222222455677777777776655311 1123456
Q ss_pred CCCcEEEecCCC
Q 011021 309 PSLEDLFVTRCC 320 (495)
Q Consensus 309 ~~L~~L~L~~~~ 320 (495)
++|+.|++++|.
T Consensus 177 ~~L~~L~l~~n~ 188 (285)
T 1ozn_A 177 HSLDRLLLHQNR 188 (285)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEECCCCc
Confidence 677777777653
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=4.2e-11 Score=117.40 Aligned_cols=214 Identities=17% Similarity=0.093 Sum_probs=120.8
Q ss_pred cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.+++.|+ +..+. ...+ |..+..+++|++|++++|.+...+ .+.++++|++|+++++.++.-.....+.++++|
T Consensus 76 ~~L~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 76 VNLQALV--LTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTCCEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCCCEEE--CCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 5677777 54322 2223 445666788999999888877654 256788899999988877421110135678889
Q ss_pred cEEEEEecCCCcce---eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021 219 EDLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (495)
Q Consensus 219 e~L~L~~c~~l~~~---~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 291 (495)
++|++++|..++.. .+.++++|+.|++++|. +..+. ..+++|++|+++++.........++.+++|+.|++
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence 99999888655544 23467888888888774 22221 13567777777744432211112234677777777
Q ss_pred eccccChHHHHH--HhhcCCCCcEEEecCCCCCc----ccc---ccccccceEEeccCCCccEEe----ccCCccceeee
Q 011021 292 VSVYFADNEFNH--LISKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTY 358 (495)
Q Consensus 292 ~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~----~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~ 358 (495)
+++.+++..... .....+.++.+++..+.... .++ ..+++|+.|+++++. ++.+. -.+++|+++++
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEe
Confidence 777655421111 11234455555555542111 111 123455666655542 22332 12566666777
Q ss_pred cccc
Q 011021 359 EFNP 362 (495)
Q Consensus 359 ~~~~ 362 (495)
+++.
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 6654
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.13 E-value=4.4e-11 Score=121.44 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=134.2
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
.+++.|+ +..+.. ....|..+..+++|++|+|++|.+.... .+.++++|++|+|+++.++.- ....+.++++|+
T Consensus 75 ~~l~~L~--L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLN--LMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEE--CCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCC
T ss_pred CCccEEE--CcCCcC-ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCC
Confidence 4677777 543221 1222445666788888888888765433 566788888888888877321 122356788888
Q ss_pred EEEEEecCCCcce---eecCCCCccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021 220 DLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (495)
Q Consensus 220 ~L~L~~c~~l~~~---~i~~l~~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (495)
+|++++|.. ..+ .+.++++|+.|++.+|. .+..+.. .+++|++|+++++.... ...+..+++|+.|+++
T Consensus 151 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 151 ELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMS 226 (452)
T ss_dssp EEECCSCCC-CEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSS--CCCCTTCTTCCEEECT
T ss_pred EEECCCCCc-ceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccc--cccccccccccEEECc
Confidence 888888864 222 23467888888888765 4444432 46788888888554432 1245677888888888
Q ss_pred ccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccc
Q 011021 293 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP 362 (495)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~ 362 (495)
++.+++... ..+.++++|+.|++.+|....... ...++|+.|+++++. +..+. -.+++|+.+++.++.
T Consensus 227 ~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 227 GNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 887765322 234677888888888774322111 235678888887763 43333 236778888888765
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.12 E-value=3.3e-11 Score=115.99 Aligned_cols=153 Identities=16% Similarity=0.088 Sum_probs=95.3
Q ss_pred cCCcceEEEEeccccCCC-C-Cc--cCCCCCcEEEeeeEeeChH--HHHHHHh-cCCCccEEEEEecCCCcce--eecCC
Q 011021 167 SANSVTNLRLVWCRLEQP-F-DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKHL--CVSKA 237 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~-~-~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~l~~~--~i~~l 237 (495)
.+++|++|++++|.+... + .. ..+++|++|+|+++.+++. .+..+.. ..+.|++|++++|...+.. .+.++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578999999999987642 2 33 7899999999999988432 2222111 1388999999988642211 23345
Q ss_pred CCccEEEeccccccceEEEEeCCcceEEEEeecCCCCc--e--eEEeecCCCccEEEeeccccCh--HHHHHHhhcCCCC
Q 011021 238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRP--R--VVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSL 311 (495)
Q Consensus 238 ~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L 311 (495)
++|+.|++++|. ..+. . ...++.+++|++|+++++.++. .....+..++++|
T Consensus 173 ~~L~~L~Ls~N~----------------------l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 173 PALSTLDLSDNP----------------------ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp SSCCEEECCSCT----------------------TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CCCCEEECCCCC----------------------cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 666666666553 1110 0 1112567889999999888874 3344555678899
Q ss_pred cEEEecCCCCCcccc----ccccccceEEeccCC
Q 011021 312 EDLFVTRCCLPGKIK----ISSNQLKNLLFRSCK 341 (495)
Q Consensus 312 ~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~ 341 (495)
+.|++++|...+..+ ...++|+.|+++++.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 999999875333221 123566666666543
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.11 E-value=4.3e-11 Score=126.62 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
.+++|+ +..+ .-..+|+ .+..+++|++|+|++|.+...+ .+.++++|++|+|++|.++.- ....+.++++|+
T Consensus 53 ~~~~Ld--Ls~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLD--LSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEE--CTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCC
T ss_pred CCCEEE--eeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCC
Confidence 566666 4332 2234443 4455777777777777765432 356677777777777766321 112356677777
Q ss_pred EEEEEecCCC--cceeecCCCCccEEEecccc-ccc--eEEEEeCCcceEEEEee
Q 011021 220 DLCFSNCWGL--KHLCVSKASKLKIMEIRSFS-EEI--EIVEISVPSLQQLTLLF 269 (495)
Q Consensus 220 ~L~L~~c~~l--~~~~i~~l~~L~~L~i~~c~-~~l--~~~~~~~p~L~~L~l~~ 269 (495)
+|++.+|... ....+.++++|+.|++.++. ..+ .......++|++|+++.
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 7777777532 22234566777777777664 111 11111346666666663
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=120.83 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=105.3
Q ss_pred cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCC
Q 011021 163 QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKAS 238 (495)
Q Consensus 163 ~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~ 238 (495)
..+..+++|++|+|++|.+.... .+.++++|++|+|++|.++.- ....+.++++|++|++++|..... ..+.+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 34455677777777777654332 455677777777777766311 111245667777777776653211 1233566
Q ss_pred CccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEE
Q 011021 239 KLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 314 (495)
+|+.|++.+|. .+..+.. .+++|++|+++.+.... . ..+..+++|+.|++++|.++.... ..+.++++|+.|
T Consensus 161 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 236 (440)
T 3zyj_A 161 SLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLRE-I-PNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKL 236 (440)
T ss_dssp TCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSS-C-CCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred ccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCcc-c-cccCCCcccCEEECCCCccCccCh-hhhccCccCCEE
Confidence 77777776654 3333321 35667777776443321 1 134566677777777776654211 224556777777
Q ss_pred EecCCCCCcccc---ccccccceEEeccCCCccEEe----ccCCccceeeecccc
Q 011021 315 FVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP 362 (495)
Q Consensus 315 ~L~~~~~~~~i~---~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~ 362 (495)
++.+|....... ...++|+.|+++++. +..+. -.+++|+.++++++.
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 777663221111 134566677666652 33332 124666677766654
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.10 E-value=2.7e-11 Score=114.97 Aligned_cols=171 Identities=14% Similarity=0.043 Sum_probs=112.5
Q ss_pred cCceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCC
Q 011021 142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPL 217 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~ 217 (495)
.++++|+ +..+. ...++ ..+..+++|++|++++|.+.... .+.++++|++|+++++. ++.- ....+.+++.
T Consensus 32 ~~l~~L~--l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIF--LHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR 106 (285)
T ss_dssp TTCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred CCceEEE--eeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence 4677777 54322 22334 34566788999999988775432 56778899999998886 4221 1223567889
Q ss_pred ccEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEe
Q 011021 218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (495)
Q Consensus 218 Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 291 (495)
|++|++.+|..... ..+.++++|+.|++.++. +..+. ..+++|+.|+++++.........+..+++|+.|++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 99999988864322 124467889999998875 22222 14678999998855442211123567889999999
Q ss_pred eccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 292 VSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
+++.+++... ..+..+++|+.|++++|.
T Consensus 185 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 185 HQNRVAHVHP-HAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred CCCcccccCH-hHccCcccccEeeCCCCc
Confidence 9888765322 234567889999998873
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=6.3e-11 Score=109.35 Aligned_cols=183 Identities=13% Similarity=0.086 Sum_probs=94.5
Q ss_pred CcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccE
Q 011021 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKI 242 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~ 242 (495)
++|++|+++++.+...+ .+.++++|++|+++++. ++.- ....+.++++|++|++.+|..+..+. +.++++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47888888888765443 45677888888888775 4210 01124577788888887744444433 234566666
Q ss_pred EEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCcc---EEEeecc-ccChHHHHHHhhcCCCCc-EEEec
Q 011021 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK---KLDLVSV-YFADNEFNHLISKFPSLE-DLFVT 317 (495)
Q Consensus 243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~~L~-~L~L~ 317 (495)
|++.+|. ... .+. ++.+++|+ .|+++++ .++.- ....+.++++|+ .|+++
T Consensus 110 L~l~~n~----------------------l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 110 LGIFNTG----------------------LKM-FPD-LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEEEC----------------------CCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECC
T ss_pred EeCCCCC----------------------Ccc-ccc-cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcC
Confidence 6666553 111 111 23334444 5555554 33321 011123445555 55555
Q ss_pred CCCCCccccc---cccccceEEeccCCCccEEec----cC-Cccceeeecccccc-eEeecCCCCceEEE
Q 011021 318 RCCLPGKIKI---SSNQLKNLLFRSCKYLKVIDV----DA-PNLLLFTYEFNPIP-IISINVPCPWKVSF 378 (495)
Q Consensus 318 ~~~~~~~i~~---~~~~L~~L~l~~c~~l~~l~~----~~-p~L~~l~~~~~~~~-~~~~~~~~L~~l~i 378 (495)
++.. +.++. ..++|+.|.+.++++++.+.. .+ ++|+.++++++.+. +....+++|+.|.+
T Consensus 165 ~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l 233 (239)
T 2xwt_C 165 NNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233 (239)
T ss_dssp SCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEEC
T ss_pred CCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeec
Confidence 4421 12211 113555555555544544431 23 56666666666543 22224667777776
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=9.8e-11 Score=111.49 Aligned_cols=146 Identities=17% Similarity=0.066 Sum_probs=71.2
Q ss_pred cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~ 244 (495)
+..+++|++|++++|.+...+....+++|++|+++++.+++ ++. +..++.|++|++++|.......+..+++|+.|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEE
Confidence 45566677777776666544345566667777776666632 111 456666666666666432222233455666666
Q ss_pred ecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 245 i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+++|. ..+ .....+++|+.|+++.+......+ +..+++|+.|+++++.+++- .. +..+++|+.|++.+|
T Consensus 141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred ccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCC
Confidence 66553 111 000133445555554332221111 33445555555555444431 11 234445555555443
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=1.7e-10 Score=108.97 Aligned_cols=139 Identities=18% Similarity=0.124 Sum_probs=88.3
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L 232 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~ 232 (495)
....+|..+. ++|++|++++|.+...+ .+.++++|++|+++++.++.-. ...+.++++|++|++++|..... .
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChh
Confidence 3445666543 57999999998876543 5678899999999998773211 12356788999999988864221 1
Q ss_pred eecCCCCccEEEecccc-ccceEEEE-eCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccCh
Q 011021 233 CVSKASKLKIMEIRSFS-EEIEIVEI-SVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD 298 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~-~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 298 (495)
.+.++++|+.|++.++. ..+....+ .+++|++|+++.+.... ..+..++.+++|+.|+++++.++.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 24467888888888775 22211112 45677777776443322 123445667777777777776554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.07 E-value=5.6e-11 Score=112.04 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=58.7
Q ss_pred cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKI 242 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~ 242 (495)
+..+++|++|++++|.+........+++|++|+++++.++.- ....+.+++.|++|++.+|...... .+.++++|+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 444555555555555554433444555555555555554211 1112344555555555555321111 1223444444
Q ss_pred EEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
|++.+|. .....+..++.+++|+.|+++++.+++. ....+..+++|+.|++.+|
T Consensus 138 L~L~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 138 LNLAHNQ----------------------LQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc----------------------cCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCC
Confidence 4444442 2111111133455666666665555431 1122344556666666655
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=8.6e-11 Score=110.60 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=83.6
Q ss_pred ccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---e
Q 011021 160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---V 234 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i 234 (495)
.+|..+. ++|++|++++|.+...+ .+.++++|++|+|+++.++. .....+.+++.|++|++++|... .+. +
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIGVF 105 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCC-cCCHhHc
Confidence 4554432 56788888887765443 45677888888887777631 11123456778888888777532 222 2
Q ss_pred cCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCC
Q 011021 235 SKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 310 (495)
.++++|+.|++.++. +..+. ..+++|++|+++++.........++.+++|+.|+++++.++... ...+..+++
T Consensus 106 ~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~ 182 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTE 182 (270)
T ss_dssp TTCSSCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTT
T ss_pred ccccCCCEEECCCCc--cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCC
Confidence 346677777777664 11111 13456666666533332211112345566666666666554311 112334566
Q ss_pred CcEEEecCC
Q 011021 311 LEDLFVTRC 319 (495)
Q Consensus 311 L~~L~L~~~ 319 (495)
|+.|++++|
T Consensus 183 L~~L~L~~N 191 (270)
T 2o6q_A 183 LKTLKLDNN 191 (270)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 666666655
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=5.1e-11 Score=114.60 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCceEeEEEeecCCCcccccCccc--ccCCcceEEEEeccccCCCC------CccCCCCCcEEEeeeEe
Q 011021 131 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC 202 (495)
Q Consensus 131 ~~~~wi~~a~~~~l~~L~l~l~~~~~~~~~lp~~l--~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L~~~~ 202 (495)
.+..........++++|+ +..+. -....|..+ ..+++|++|++++|.+.... ....+++|++|+|++|.
T Consensus 80 ~~~~~~~~~~~~~L~~L~--l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 80 LLVGALRVLAYSRLKELT--LEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHSCCCEEE--EESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHhcccCceeEEE--eeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 444444444445677777 43221 122334443 45666777777776655321 12346667777776666
Q ss_pred eChHHHHHHHhcCCCccEEEEEecCCCcc------eeecCCCCccEEEecccc-ccceEE----EEeCCcceEEEEeecC
Q 011021 203 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYG 271 (495)
Q Consensus 203 ~~~~~l~~l~~~~p~Le~L~L~~c~~l~~------~~i~~l~~L~~L~i~~c~-~~l~~~----~~~~p~L~~L~l~~~~ 271 (495)
+... ....+.++++|++|++++|...+. .....+++|+.|++++|. ..+... .-..++|++|+++++.
T Consensus 157 l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 157 SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 5211 112244566666666666654321 111345666666666654 111110 0123555555555333
Q ss_pred CCCceeEEeecC---CCccEEEeeccccC
Q 011021 272 ARRPRVVEVARS---PHLKKLDLVSVYFA 297 (495)
Q Consensus 272 ~~~~~~~~~~~~---~~L~~L~l~~~~~~ 297 (495)
.....+..++.+ ++|++|++++|.++
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 322212222222 45555555555544
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=1.4e-10 Score=103.56 Aligned_cols=146 Identities=20% Similarity=0.203 Sum_probs=77.3
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCc--ceeecCCCCccEEE
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME 244 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~--~~~i~~l~~L~~L~ 244 (495)
.+++|++|++++|.+...++...+++|++|+++++.++.- . .+..++.|++|++++|.... ...+.++++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3456666666666655433455666666666666654221 1 24556666666666665322 22334556666666
Q ss_pred ecccc-cc-ceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 245 IRSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 245 i~~c~-~~-l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+++|. .. .......+++|+.|+++++......+ .++.+++|+.|+++++.+++-. .+..+++|+.|++.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 66554 10 00000134556666655433111111 3456677777777777665521 2456677777777665
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=4.7e-11 Score=112.53 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=96.3
Q ss_pred HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
..+++.|+ +..+.. ..+ ..+..+++|++|++++|.+...+ .+..+++|++|+++++.++.- ....+.+++.|
T Consensus 62 l~~L~~L~--l~~n~l--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 135 (272)
T 3rfs_A 62 LPNVRYLA--LGGNKL--HDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNL 135 (272)
T ss_dssp CTTCCEEE--CTTSCC--CCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTC
T ss_pred CCCCcEEE--CCCCCC--CCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCC
Confidence 36888888 654322 223 36777899999999999887654 367899999999999988421 12336789999
Q ss_pred cEEEEEecCCCccee---ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccc
Q 011021 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (495)
Q Consensus 219 e~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 295 (495)
++|++.+|.. ..+. +.++++|+.|++.+|. +..+ .+..++.+++|+.|+++++.
T Consensus 136 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~--l~~~--------------------~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 136 TYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQ--LQSL--------------------PEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CCCC--------------------CTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcc-CccCHHHhccCccCCEEECCCCC--cCcc--------------------CHHHhcCCccCCEEECCCCc
Confidence 9999999953 3322 3456778888877764 1111 11112345666666666666
Q ss_pred cChHHHHHHhhcCCCCcEEEecCC
Q 011021 296 FADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 296 ~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+++.. ...+..+++|+.|++.+|
T Consensus 193 l~~~~-~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 193 LKSVP-DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCccC-HHHHhCCcCCCEEEccCC
Confidence 55411 122345666666666665
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=4.2e-11 Score=115.20 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=82.9
Q ss_pred CCcceEEEEeccccCCCC--Cc--cCCCCCcEEEeeeEeeChHH--HH-HHHhcCCCccEEEEEecCCCcc--eeecCCC
Q 011021 168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKH--LCVSKAS 238 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~--~~--~~l~~L~~L~L~~~~~~~~~--l~-~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~ 238 (495)
.++|++|++++|.+.... .. ..+++|++|+|++|.++... +. .-+..+++|++|++++|..... ..+.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 466999999998875433 33 77889999999999884311 11 1234788899999988864221 1223456
Q ss_pred CccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh--HHHHHHhhcCCCCcEEEe
Q 011021 239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFV 316 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~L 316 (495)
+|+.|++++|. -.... + ......++.+++|++|++++|.++. .....+...+++|+.|++
T Consensus 170 ~L~~L~Ls~N~-l~~~~---------------~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 170 ALTSLDLSDNP-GLGER---------------G--LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp TCCEEECCSCT-TCHHH---------------H--HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred CCCEEECCCCC-Cccch---------------h--hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 66666666553 00000 0 0001112457788888888888763 222234567788888888
Q ss_pred cCCCC
Q 011021 317 TRCCL 321 (495)
Q Consensus 317 ~~~~~ 321 (495)
++|..
T Consensus 232 s~N~l 236 (310)
T 4glp_A 232 SHNSL 236 (310)
T ss_dssp TTSCC
T ss_pred CCCCC
Confidence 88743
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.02 E-value=6.2e-11 Score=117.67 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=38.0
Q ss_pred ecCCCccEEEeeccccChHH---HHHHhhcCCCCcEEEecCCCCCcc----ccc-----cccccceEEeccCCCcc----
Q 011021 281 ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----IKI-----SSNQLKNLLFRSCKYLK---- 344 (495)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~----i~~-----~~~~L~~L~l~~c~~l~---- 344 (495)
..+++|+.|++++|.+++.. +...+..+++|+.|++++|..... ++. ..++|+.|.+++|.--.
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 34556666666655554321 222334555666666655532111 111 13455555555553211
Q ss_pred EEe----ccCCccceeeecccc
Q 011021 345 VID----VDAPNLLLFTYEFNP 362 (495)
Q Consensus 345 ~l~----~~~p~L~~l~~~~~~ 362 (495)
.+. ..+++|++++++++.
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhcCCCceEEEccCCc
Confidence 111 124666666666654
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=1.5e-10 Score=113.97 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred CcccccCCcceEEEEeccccCCCC------CccCCC-CCcEEEeeeEeeCh---HHHHHHHhcC-CCccEEEEEecCCCc
Q 011021 162 PQAIFSANSVTNLRLVWCRLEQPF------DSIMLC-SLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCWGLK 230 (495)
Q Consensus 162 p~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~l~ 230 (495)
|..+...++|++|+|++|.+...+ .+..++ +|++|+|++|.+++ ..+...+..+ +.|++|++++|..-.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 333333456888888888765543 234566 78888888887743 3344444443 788888888876321
Q ss_pred ce------eecCC-CCccEEEeccccccceEEEE--------e-CCcceEEEEeecCCCCce----eEEeecCC-CccEE
Q 011021 231 HL------CVSKA-SKLKIMEIRSFSEEIEIVEI--------S-VPSLQQLTLLFYGARRPR----VVEVARSP-HLKKL 289 (495)
Q Consensus 231 ~~------~i~~l-~~L~~L~i~~c~~~l~~~~~--------~-~p~L~~L~l~~~~~~~~~----~~~~~~~~-~L~~L 289 (495)
.. .+..+ ++|+.|++++|. +..... . .++|++|+++++...... ...+...+ +|++|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 11 02233 577777777664 111110 0 235666666533322111 01112233 66666
Q ss_pred EeeccccChH---HHHHHhhcCC-CCcEEEecCC
Q 011021 290 DLVSVYFADN---EFNHLISKFP-SLEDLFVTRC 319 (495)
Q Consensus 290 ~l~~~~~~~~---~~~~l~~~~~-~L~~L~L~~~ 319 (495)
++++|.+++. .+...+..++ +|+.|++++|
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 6666665442 2223333443 6666666665
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.00 E-value=4.2e-10 Score=103.79 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=113.4
Q ss_pred CceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccc-cCCCC--CccCCCCCcEEEeee-EeeChHHHHHHHhcCCC
Q 011021 143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPL 217 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~-l~~~~--~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~p~ 217 (495)
++++|+ +..+ .-..+|. .+..+++|++|++++|. +...+ .+.++++|++|++++ +.++.- ....+.++++
T Consensus 32 ~l~~L~--l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLK--LIET--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPL 106 (239)
T ss_dssp TCCEEE--EESC--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTT
T ss_pred cccEEE--EeCC--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCC
Confidence 677777 4432 2234454 45568999999999996 65433 567899999999998 666321 1123568899
Q ss_pred ccEEEEEecCCCcceeecCCCCcc---EEEeccccccceEEEE----eCCcce-EEEEeecCCCCceeEEeecCCCccEE
Q 011021 218 LEDLCFSNCWGLKHLCVSKASKLK---IMEIRSFSEEIEIVEI----SVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKL 289 (495)
Q Consensus 218 Le~L~L~~c~~l~~~~i~~l~~L~---~L~i~~c~~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (495)
|++|++.+|...+-..+..+++|+ .|++.++. .+..+.. .+++|+ .|+++.+... ..+......++|+.|
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEE
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEE
Confidence 999999998643322244556666 88888773 2333221 356777 7777644332 111111123677888
Q ss_pred Eeeccc-cChHHHHHHhhcC-CCCcEEEecCCCCCccccc-cccccceEEeccCC
Q 011021 290 DLVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK 341 (495)
Q Consensus 290 ~l~~~~-~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~ 341 (495)
+++++. ++.- ....+.++ ++|+.|+++++.. ..++. .+++|+.|.+.++.
T Consensus 185 ~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l-~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSV-TALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCC-CCCCCTTCTTCSEEECTTC-
T ss_pred EcCCCCCcccC-CHHHhhccccCCcEEECCCCcc-ccCChhHhccCceeeccCcc
Confidence 887774 5431 12223456 7788888877532 23322 35666666665554
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.99 E-value=1.5e-10 Score=108.85 Aligned_cols=171 Identities=16% Similarity=0.075 Sum_probs=119.8
Q ss_pred cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.++++|+ +..+. ...+|. .+..+++|++|++++|.+...+ .+..+++|++|+++++.+..-. ...+.++++|
T Consensus 37 ~~l~~L~--l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLD--LQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNL 111 (270)
T ss_dssp TTCSEEE--CCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSC
T ss_pred CCCCEEE--CcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCC
Confidence 3677777 54322 234444 5667899999999999876554 3467999999999999884211 1345789999
Q ss_pred cEEEEEecCCCcc--eeecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (495)
Q Consensus 219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (495)
++|++.+|..... ..+.++++|+.|+++++. +..+. ..+++|+.|+++.+.........+..+++|+.|+++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 9999999864322 224568999999999885 22222 246899999998554433222335678999999999
Q ss_pred ccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 293 SVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
++.++.. ....+..+++|+.|++.+|+
T Consensus 190 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NNQLKRV-PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcC-CHHHhccccCCCEEEecCCC
Confidence 9987652 22334678999999999874
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.99 E-value=4.1e-10 Score=107.13 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=124.5
Q ss_pred ccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021 166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i 245 (495)
..+++|++|++++|.+...+....+++|++|+++++.+++-. . +.++++|++|++++|..-....+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 346889999999998876666788999999999999984322 2 7899999999999997544334667899999999
Q ss_pred cccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021 246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (495)
Q Consensus 246 ~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 324 (495)
++|. ..+.. ...+++|+.|+++.+..... ..++.+++|+.|+++++.+++... +..+++|+.|++++|. ++.
T Consensus 120 ~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~ 192 (291)
T 1h6t_A 120 EHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISD 192 (291)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCB
T ss_pred CCCcCCCChh-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCC
Confidence 9986 22211 12578999999996554332 356789999999999999877322 6789999999999883 233
Q ss_pred cc--ccccccceEEeccCC
Q 011021 325 IK--ISSNQLKNLLFRSCK 341 (495)
Q Consensus 325 i~--~~~~~L~~L~l~~c~ 341 (495)
++ ...++|+.|++.+++
T Consensus 193 l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 193 LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CGGGTTCTTCSEEEEEEEE
T ss_pred ChhhccCCCCCEEECcCCc
Confidence 32 245677777776653
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=2.8e-10 Score=101.70 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=86.4
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+. ...+| .+..+++|++|++++|.+........+++|++|+++++.+++..... +..+++|++|
T Consensus 44 ~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYIT--LANIN--VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HTCCEEE--EESSC--CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred CCccEEe--ccCCC--ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 4566666 43322 12444 45566777777777776555445566777777777777664322222 4567777777
Q ss_pred EEEecCCCc--ceeecCCCCccEEEeccccccceEEE--EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021 222 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (495)
Q Consensus 222 ~L~~c~~l~--~~~i~~l~~L~~L~i~~c~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (495)
++++|.... ...+..+++|+.|++++|. .+..+. ..+++|+.|+++++.... .. .+..+++|+.|+++++.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 777765432 1223456777777777764 122221 246777888777544422 11 5667899999999988765
Q ss_pred h
Q 011021 298 D 298 (495)
Q Consensus 298 ~ 298 (495)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=2.5e-10 Score=119.52 Aligned_cols=166 Identities=16% Similarity=0.070 Sum_probs=114.6
Q ss_pred HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
..+++.|. +..+. ...+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+ ++ .+..+++|+.
T Consensus 42 L~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQII--ANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCB--CTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCE
T ss_pred CCCCCEEE--CcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCE
Confidence 35777777 54322 23344 467788999999999887765557788999999999988843 22 3678899999
Q ss_pred EEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChH
Q 011021 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (495)
Q Consensus 221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 299 (495)
|+|++|.......+..+++|+.|++++|. ..+ .....+++|+.|+++.+......+ +..+++|+.|+|++|.+++-
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 99988875433345567889999988885 222 111256788888888555433222 66788888888888877662
Q ss_pred HHHHHhhcCCCCcEEEecCCC
Q 011021 300 EFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 300 ~~~~l~~~~~~L~~L~L~~~~ 320 (495)
..+..+++|+.|+|.+|.
T Consensus 191 ---~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 ---RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ---GGGTTCTTCSEEECCSEE
T ss_pred ---hHHccCCCCCEEEccCCc
Confidence 225677888888888763
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.98 E-value=6.2e-10 Score=117.67 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=142.6
Q ss_pred cceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc
Q 011021 170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 170 ~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~ 249 (495)
+++.+.+.++.+..........+|+.|++.++.+..-. ...++.|+.+.+..+..........+++|+.|++..+.
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSC
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhccc
Confidence 34444444433322222333445555555555442110 12345555555555543333333345677777766553
Q ss_pred ccceEEE------EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc
Q 011021 250 EEIEIVE------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (495)
Q Consensus 250 ~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 323 (495)
+.... ...++|+.+++..++. ......+..+++|+.+++.++.............+++++.+++..+....
T Consensus 383 --l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 383 --LSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp --CBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred --cccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 11111 1345666666653222 11222344577788887776654332222234567788888887763322
Q ss_pred c---ccccccccceEEeccCCCccEEe----ccCCccceeeecccccc----eEeecCCCCceEEEEEecccchhhhcch
Q 011021 324 K---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKL 392 (495)
Q Consensus 324 ~---i~~~~~~L~~L~l~~c~~l~~l~----~~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l 392 (495)
. .....+.++.|.+.++.....+. -.+++|+.++++++.+. ..+.++++|++|+++.+.. ....
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l-----~~l~ 534 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLD 534 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-----CBCC
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC-----CCCC
Confidence 1 12235678888887776443221 23678888888887743 3456788899998854332 1222
Q ss_pred HHHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEecCC--CccHHHHHHHH
Q 011021 393 KKFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHTNVP--LSDYETLLDCV 453 (495)
Q Consensus 393 ~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~~~~--~~~~~~l~~~l 453 (495)
+..++++++|+.|+++...... ..|+.+..+ |++|+.|++++|+- .-...++...+
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l----~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMT-SKKQELQHF----PSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCB-CCSSCTTCC----CTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred hhHHhCCCCCCEEECCCCcCCC-CCHHHHHhh----hCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 4567888899976664332222 345555443 36789999998873 33344444444
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.97 E-value=4e-10 Score=107.12 Aligned_cols=150 Identities=14% Similarity=0.041 Sum_probs=77.6
Q ss_pred cCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEec
Q 011021 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (495)
Q Consensus 167 ~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~ 246 (495)
.+++++.++++++.+...+ ..-.++++.|+|+++.++.-. ...+.+++.|++|++++|..........+++|+.|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip-~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCC-CCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECC
Confidence 3456666666666655433 112356677777766663211 12245666777777766653221122345666666666
Q ss_pred ccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 247 ~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
++. ..+.......++|+.|+++.+......+..++++++|+.|+++++.++.- ....+..+++|+.|++++|
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC
Confidence 654 11111111345666666664433222223345666777777777665531 1122345667777777765
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.96 E-value=3.8e-10 Score=118.06 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=119.9
Q ss_pred ccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEe
Q 011021 166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i 245 (495)
..+++|+.|++++|.+...+.+..+++|+.|+|+++.+.+-. . +..+++|+.|+|++|.......+..+++|+.|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 346788999999988876666788999999999999884321 1 7789999999999986543334557889999999
Q ss_pred cccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcc
Q 011021 246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (495)
Q Consensus 246 ~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 324 (495)
++|. ..+.. ...+++|+.|+++.+..... ..++.+++|+.|+|++|.+.+... +..+++|+.|+|++|.. ..
T Consensus 117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i-~~ 189 (605)
T 1m9s_A 117 EHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI-SD 189 (605)
T ss_dssp TTSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CB
T ss_pred cCCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCC-CC
Confidence 9886 22211 12578999999985554332 356678999999999988876322 57789999999998732 22
Q ss_pred cc--ccccccceEEeccCC
Q 011021 325 IK--ISSNQLKNLLFRSCK 341 (495)
Q Consensus 325 i~--~~~~~L~~L~l~~c~ 341 (495)
++ ..+++|+.|++..++
T Consensus 190 l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 190 LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CGGGTTCTTCSEEECCSEE
T ss_pred ChHHccCCCCCEEEccCCc
Confidence 32 245678888777664
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=5.4e-11 Score=117.07 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=90.3
Q ss_pred EEEEeccccCCCC-Ccc-CCCCCcEEEeeeEeeChH---HHHHHHhcCC-CccEEEEEecCCCcc--eeecC-----CCC
Q 011021 173 NLRLVWCRLEQPF-DSI-MLCSLKKLTLERVCLDEQ---MVQKLASECP-LLEDLCFSNCWGLKH--LCVSK-----ASK 239 (495)
Q Consensus 173 ~L~L~~c~l~~~~-~~~-~l~~L~~L~L~~~~~~~~---~l~~l~~~~p-~Le~L~L~~c~~l~~--~~i~~-----l~~ 239 (495)
.++++++.+.... .+. ..++|++|+|++|.+++. .+...+.++| .|++|++++|..-.. ..+.. .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3566666665433 233 345599999999998443 3335567888 999999999963221 11222 288
Q ss_pred ccEEEecccc-ccceE--EE---EeC-CcceEEEEeecCCCCceeEE----eec-CCCccEEEeeccccChHH---HHHH
Q 011021 240 LKIMEIRSFS-EEIEI--VE---ISV-PSLQQLTLLFYGARRPRVVE----VAR-SPHLKKLDLVSVYFADNE---FNHL 304 (495)
Q Consensus 240 L~~L~i~~c~-~~l~~--~~---~~~-p~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~---~~~l 304 (495)
|++|++++|. ..... +. ... ++|++|+++++......... +.. .++|++|++++|.+++.. +...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999886 11111 00 112 68888888855442221111 122 358888888888877532 3333
Q ss_pred hhcCC-CCcEEEecCCC
Q 011021 305 ISKFP-SLEDLFVTRCC 320 (495)
Q Consensus 305 ~~~~~-~L~~L~L~~~~ 320 (495)
+..++ +|+.|++++|.
T Consensus 162 l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHTSCTTCCEEECTTSC
T ss_pred HhcCCccccEeeecCCC
Confidence 34455 88888888873
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.91 E-value=5.1e-10 Score=106.39 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=104.4
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C 233 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~ 233 (495)
-..+|..+. +++++|++++|.+.... .+..+++|++|+|+++.++.-.. ...++.|++|++++|... .+ .
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~ 95 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLL 95 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCC
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchh
Confidence 345665553 67889999988875433 56778899999998887732111 157888999999888642 22 2
Q ss_pred ecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCC
Q 011021 234 VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP 309 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (495)
+.++++|+.|+++++. +..+. -.+++|++|+++.+.........+..+++|+.|+++++.++.- ....+..++
T Consensus 96 ~~~l~~L~~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~ 172 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLE 172 (290)
T ss_dssp TTTCTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCT
T ss_pred hccCCCCCEEECCCCc--CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcC
Confidence 3467889999988875 22222 2467899999885544332222345788999999999887641 223345688
Q ss_pred CCcEEEecCCC
Q 011021 310 SLEDLFVTRCC 320 (495)
Q Consensus 310 ~L~~L~L~~~~ 320 (495)
+|+.|++++|.
T Consensus 173 ~L~~L~L~~N~ 183 (290)
T 1p9a_G 173 NLDTLLLQENS 183 (290)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999998873
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.90 E-value=3.4e-10 Score=105.24 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=88.0
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L 232 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~ 232 (495)
....+|..+. +++++|+|++|.+.... .+.++++|++|+|+++.++.. ....+.+++.|++|++++|..... .
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChh
Confidence 3445665543 57888888888776543 466788888888888877321 122356778888888888764221 1
Q ss_pred eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcC
Q 011021 233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 308 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 308 (495)
.+.++++|+.|+++++. +..+. ...++|+.|+++.+......+..++.+++|+.|+++++.++... ...+..+
T Consensus 102 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l 178 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRL 178 (251)
T ss_dssp TTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred HhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCC
Confidence 22356777777777664 22111 12455666665533332211112345556666666655554311 1123345
Q ss_pred CCCcEEEecCC
Q 011021 309 PSLEDLFVTRC 319 (495)
Q Consensus 309 ~~L~~L~L~~~ 319 (495)
++|+.|++.+|
T Consensus 179 ~~L~~L~l~~N 189 (251)
T 3m19_A 179 GKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEEeeCC
Confidence 56666666554
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.88 E-value=4.6e-10 Score=105.92 Aligned_cols=172 Identities=15% Similarity=0.059 Sum_probs=109.4
Q ss_pred cCceEeEEEeecCCCcccccCc-ccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.++++|+ +..+. -..++. .+..+++|++|++++|.+...+ .+.++++|++|+++++.++... ...+.+++.|
T Consensus 28 ~~l~~L~--ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLD--LSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL 102 (276)
T ss_dssp TTCCEEE--CTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTC
T ss_pred CCccEEE--CCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccc
Confidence 3677777 54322 233343 5666899999999999876443 4678899999999999874221 1235688999
Q ss_pred cEEEEEecCCCc--ceeecCCCCccEEEecccc-cc--ceEEEEeCCcceEEEEeecCCCCceeEEeecCCCcc----EE
Q 011021 219 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KL 289 (495)
Q Consensus 219 e~L~L~~c~~l~--~~~i~~l~~L~~L~i~~c~-~~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L 289 (495)
++|++.+|.... ...+.++++|+.|+++++. .. +.......++|+.|+++++.........+..+++|+ .|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 999999886432 2346678999999999885 11 111112568999999985544321122333444555 77
Q ss_pred EeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 290 ~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
+++++.++.... ......+|+.|++++|.
T Consensus 183 ~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 183 DLSLNPMNFIQP--GAFKEIRLKELALDTNQ 211 (276)
T ss_dssp ECCSSCCCEECT--TSSCSCCEEEEECCSSC
T ss_pred ecCCCcccccCc--cccCCCcccEEECCCCc
Confidence 787777654211 11233478888888764
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.85 E-value=2e-09 Score=105.18 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=106.6
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-- 233 (495)
-..+|..+ .+++++|+|++|.+...+ .+.++++|++|+|++|.+.+..-...+.+++.|+++.+.++..+..+.
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 34667655 367899999999876544 467899999999998875211111235678888877776666665543
Q ss_pred -ecCCCCccEEEecccc-ccceEE-EEeCCcceEEEEeecCCCCceeE-EeecC-CCccEEEeeccccChHHHHHHhhcC
Q 011021 234 -VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV-EVARS-PHLKKLDLVSVYFADNEFNHLISKF 308 (495)
Q Consensus 234 -i~~l~~L~~L~i~~c~-~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~ 308 (495)
+.++++|+.|++.++. ..+... .....++..+++..+......+. .+..+ ..++.|+++++.++. +.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~ 176 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG 176 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence 3467888888888875 111111 12344566666652221111111 12222 357777887777654 11111234
Q ss_pred CCCcEEEecCCCCCccccc----cccccceEEeccCCCccEE
Q 011021 309 PSLEDLFVTRCCLPGKIKI----SSNQLKNLLFRSCKYLKVI 346 (495)
Q Consensus 309 ~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l~~c~~l~~l 346 (495)
++|+.|.+.++..++.++. ..++|+.|+++++ +++.+
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l 217 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL 217 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc
Confidence 5677777776666665543 2456666666654 24443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.84 E-value=1e-09 Score=102.72 Aligned_cols=145 Identities=13% Similarity=0.078 Sum_probs=86.8
Q ss_pred cccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEE
Q 011021 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~ 244 (495)
+..+++|++|++++|.+...+....+++|++|+|+++.+++-. . +.+++.|++|++++|..-....+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 4456778888888887765555667888888888888773221 1 6678888888888875422112222 6777777
Q ss_pred ecccc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 245 i~~c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+++|. ..+.. ...+++|+.|+++++..... ..++.+++|+.|+++++.+++. ..+..+++|+.|+++++
T Consensus 113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred ccCCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 77664 11111 01345666666663333221 1345667777777777666653 33455667777777665
No 102
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.79 E-value=2.5e-09 Score=73.02 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhhh
Q 011021 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY 54 (495)
Q Consensus 16 ~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~lw 54 (495)
+.+.++.||+|++.+||+|||.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999763
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.76 E-value=1.5e-09 Score=97.75 Aligned_cols=89 Identities=20% Similarity=0.090 Sum_probs=58.0
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C 233 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~ 233 (495)
...+|..+ .++|++|+++++.+...+ .+..+++|++|+++++.++. .....+.+++.|++|++++|...... .
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 34555544 357899999998876544 35678889999998887742 11223567888888888887532211 1
Q ss_pred ecCCCCccEEEecccc
Q 011021 234 VSKASKLKIMEIRSFS 249 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~ 249 (495)
+.++++|+.|+++++.
T Consensus 96 ~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQ 111 (208)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCccCCCEEEcCCCc
Confidence 3356677777776663
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=2.6e-09 Score=92.60 Aligned_cols=128 Identities=19% Similarity=0.135 Sum_probs=80.6
Q ss_pred CCcceEEEEeccccC--CCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021 168 ANSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI 242 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~--~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~ 242 (495)
.++|++|++++|.+. ..+ .+..+++|+.|++++|.++.- ..+..+++|++|++++|....... ...+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 367888888888876 333 446788888888888877432 335667777777777775432111 112444555
Q ss_pred EEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHHH--HHHhhcCCCCcEEEecCC
Q 011021 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~L~~~ 319 (495)
|++++|. ... +....++.+++|+.|+++++.++.... ...+..+++|+.|++.+|
T Consensus 100 L~Ls~N~----------------------l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNK----------------------LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSS----------------------CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCc----------------------cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 5444442 211 111345578889999999888765321 235677899999998887
Q ss_pred C
Q 011021 320 C 320 (495)
Q Consensus 320 ~ 320 (495)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=1.7e-09 Score=101.21 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=104.1
Q ss_pred CCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecc
Q 011021 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~ 247 (495)
..+++.++++++.+........+++|++|+++++.++. ++ -+..+++|++|++++|..-....+.++++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 45566667777766654456789999999999998843 22 3678999999999999754333367889999999999
Q ss_pred cc-ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 248 c~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
|. ..+..+.. ++|+.|+++++..... ..++.+++|+.|+++++.+++- ..+..+++|+.|++++|.
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSC
T ss_pred CccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCc
Confidence 86 22222222 8899999985554332 2466788999999999888763 135678999999998873
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.68 E-value=7.8e-09 Score=95.95 Aligned_cols=148 Identities=19% Similarity=0.141 Sum_probs=105.1
Q ss_pred CceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 143 GVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
+++.|+ +..+. ...+ +..+..+++|++|+|++|.+...+ .+..+++|++|+|+++.++.- ....+.++++|+
T Consensus 36 ~l~~L~--L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLD--LQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLD 110 (251)
T ss_dssp TCCEEE--CTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCC
T ss_pred CCCEEE--ccCCC--cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCC
Confidence 567777 54322 2223 334666899999999999886654 467899999999999988421 123357899999
Q ss_pred EEEEEecCCCccee---ecCCCCccEEEeccccccceEEE---E-eCCcceEEEEeecCCCCceeEEeecCCCccEEEee
Q 011021 220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE---I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (495)
Q Consensus 220 ~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c~~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (495)
+|++++|.. ..+. +.++++|+.|+++++. +..+. + ..++|+.|+++++......+..+..+++|+.|+++
T Consensus 111 ~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 111 KLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp EEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCcC-CCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 999999864 3322 3467999999999885 32222 1 46899999999665543333346678999999999
Q ss_pred ccccCh
Q 011021 293 SVYFAD 298 (495)
Q Consensus 293 ~~~~~~ 298 (495)
+|.+..
T Consensus 188 ~N~~~c 193 (251)
T 3m19_A 188 GNQFDC 193 (251)
T ss_dssp SCCBCT
T ss_pred CCceeC
Confidence 998765
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.66 E-value=3.3e-08 Score=102.38 Aligned_cols=136 Identities=17% Similarity=0.071 Sum_probs=86.9
Q ss_pred HcCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccE
Q 011021 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (495)
Q Consensus 141 ~~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 220 (495)
..+++.|+ +..+. ...+|..++ ++|++|+|++|.+...+ ..+++|++|+|++|.++. ++. +.+ +|++
T Consensus 58 ~~~L~~L~--Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~ 124 (571)
T 3cvr_A 58 INQFSELQ--LNRLN--LSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKH 124 (571)
T ss_dssp HTTCSEEE--CCSSC--CSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCE
T ss_pred cCCccEEE--eCCCC--CCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCE
Confidence 35788888 54332 234776554 78899999988877544 567889999998888743 332 222 8888
Q ss_pred EEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (495)
Q Consensus 221 L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (495)
|++++|..- .++. .+++|+.|++++|. +..+....++|+.|+++++.... .+. +. ++|+.|++++|.++
T Consensus 125 L~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 125 LDVDNNQLT-MLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS-CCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred EECCCCcCC-CCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 888888642 2333 56788888888775 22222245677777777544322 222 32 67777777777665
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.66 E-value=1.3e-09 Score=92.55 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCcceEEEEeccccC--CCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCCCccE
Q 011021 168 ANSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKI 242 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~--~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~~L~~ 242 (495)
.++|++|++++|.+. ..+ .+..+++|+.|++++|.+++- ..+..++.|++|++++|......+ ..++++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 367888888888776 222 446778888888888877432 335566777777777665322111 112344444
Q ss_pred EEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHHH--HHHhhcCCCCcEEEec
Q 011021 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVT 317 (495)
Q Consensus 243 L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~L~ 317 (495)
|++++|. ... +.+..++.+++|+.|++++|.+++... ...+..+++|+.|+++
T Consensus 93 L~ls~N~----------------------i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK----------------------IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC----------------------CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCc----------------------CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444432 211 111234567777777777777655221 2345567777777664
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=2.1e-08 Score=86.77 Aligned_cols=105 Identities=21% Similarity=0.063 Sum_probs=78.8
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.+... ++..+.++++|++|
T Consensus 24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 4678888 55433322377887788999999999999887655677899999999999998532 45567789999999
Q ss_pred EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~ 249 (495)
++++|..... ..+..+++|+.|++++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9999964331 234466778888777764
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.61 E-value=1.5e-08 Score=92.58 Aligned_cols=136 Identities=16% Similarity=0.046 Sum_probs=85.4
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee-
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 233 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~- 233 (495)
....+|..+. ++|++|+|++|.+.... .+..+++|++|+|+++.++.- ....+.++++|+.|++++|.. ..+.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccCh
Confidence 3456665443 78999999998876543 467889999999999887321 112356788888888888853 2222
Q ss_pred --ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 234 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 234 --i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
+..+++|+.|+++++. +. ..+..+..+++|+.|++++|.++.-. ...+..+++|
T Consensus 106 ~~~~~l~~L~~L~Ls~N~--l~---------------------~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 161 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNK--LT---------------------ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSL 161 (229)
T ss_dssp TTTTTCTTCCEEECCSSC--CC---------------------SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred hHhCcchhhCeEeccCCc--cc---------------------ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence 2345666666666553 11 12222346677777777777665411 1234566777
Q ss_pred cEEEecCCC
Q 011021 312 EDLFVTRCC 320 (495)
Q Consensus 312 ~~L~L~~~~ 320 (495)
+.|++.+++
T Consensus 162 ~~L~l~~N~ 170 (229)
T 3e6j_A 162 THAYLFGNP 170 (229)
T ss_dssp CEEECTTSC
T ss_pred CEEEeeCCC
Confidence 777777764
No 111
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=4.3e-08 Score=84.41 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=73.8
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEe-eChHHHHHHHhc---CCCccEEEEEecCCCcc
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH 231 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~---~p~Le~L~L~~c~~l~~ 231 (495)
...+|..-.....|++|++++|.++... ...+|++|++|+|++|. +++.++..+... |+.|++|+|++|..+++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 4566764444568999999999976654 45789999999999996 599999987753 78999999999998776
Q ss_pred e---eecCCCCccEEEecccc
Q 011021 232 L---CVSKASKLKIMEIRSFS 249 (495)
Q Consensus 232 ~---~i~~l~~L~~L~i~~c~ 249 (495)
. .+.++++|++|++++|.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 3 33467899999999887
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.58 E-value=1.9e-08 Score=85.19 Aligned_cols=105 Identities=21% Similarity=0.135 Sum_probs=79.6
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++++|+ +..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.++.. ++..+.++++|++|
T Consensus 17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4677777 54433222367887788999999999999887655677899999999999999542 55667789999999
Q ss_pred EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~ 249 (495)
++++|...+. ..+.++++|+.|++++|.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999975331 234567888888888775
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.55 E-value=2.4e-08 Score=90.64 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=80.7
Q ss_pred cccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee-
Q 011021 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 233 (495)
Q Consensus 157 ~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~- 233 (495)
....+|..+. ++|+.|+++++.+...+ .+..+++|++|+|+++.++.- ....+.++++|++|+|++|... .+.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 3445666543 67899999998876443 567788999999988877321 1223567888888888887532 222
Q ss_pred --ecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 234 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 234 --i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
+.++++|+.|+++++. .....+..+..+++|+.|++++|.++... ...+..+++|
T Consensus 98 ~~f~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 154 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANK----------------------INCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAI 154 (220)
T ss_dssp TTTTTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred hHccCCCCCCEEECCCCC----------------------CCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCC
Confidence 2345666666666653 11111122334566666666666554311 1123445666
Q ss_pred cEEEecCC
Q 011021 312 EDLFVTRC 319 (495)
Q Consensus 312 ~~L~L~~~ 319 (495)
+.|++.+|
T Consensus 155 ~~L~L~~N 162 (220)
T 2v9t_B 155 QTMHLAQN 162 (220)
T ss_dssp CEEECCSS
T ss_pred CEEEeCCC
Confidence 66666665
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=5.8e-09 Score=93.10 Aligned_cols=133 Identities=16% Similarity=0.158 Sum_probs=81.2
Q ss_pred cccCcccccCCcceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS 238 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~ 238 (495)
..+|..+..+++|++|++++|.+...+....+++|++|++++|.++ .++..+..+|.|++|++++|...+-..+..++
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 4455566777888888888887765445667888888888888874 23344556678888888887532211122234
Q ss_pred CccEEEeccccccceEEEEeCCcceEEEEeecCCCC-ceeEEeecCCCccEEEeeccccChHH---------HHHHhhcC
Q 011021 239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNE---------FNHLISKF 308 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~l~~~~ 308 (495)
+|+.|++.+| .... +....+..+++|+.|+++++.+++.. ....+..+
T Consensus 116 ~L~~L~l~~N----------------------~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 116 NLRVLYMSNN----------------------KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp HSSEEEESEE----------------------ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CCCEEECCCC----------------------cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 4444444433 2211 01113456788888888887765431 22345678
Q ss_pred CCCcEEE
Q 011021 309 PSLEDLF 315 (495)
Q Consensus 309 ~~L~~L~ 315 (495)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 8888876
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=1.8e-07 Score=91.23 Aligned_cols=198 Identities=15% Similarity=0.023 Sum_probs=124.3
Q ss_pred cCceEeEEEeecCCCcccccCccc-ccCCcceEEEEeccccCC-CC--CccCCCCCcEEE-eeeEeeChHHHHHHHhcCC
Q 011021 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ-PF--DSIMLCSLKKLT-LERVCLDEQMVQKLASECP 216 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~c~l~~-~~--~~~~l~~L~~L~-L~~~~~~~~~l~~l~~~~p 216 (495)
+++++|+ +..+ .-..+|... ..+++|++|+|++|.+.. .+ .+.++++|+.+. +..+.+.. .....+.+++
T Consensus 30 ~~l~~L~--Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELR--FVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEE--EESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEE--ccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 4788888 5433 334677654 558999999999998633 22 456788877654 44454421 1122367899
Q ss_pred CccEEEEEecCCCcceee--cCCCCccEEEeccccccceEEEE-----eCCcceEEEEeecCCCCceeEEeecCCCccEE
Q 011021 217 LLEDLCFSNCWGLKHLCV--SKASKLKIMEIRSFSEEIEIVEI-----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (495)
Q Consensus 217 ~Le~L~L~~c~~l~~~~i--~~l~~L~~L~i~~c~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (495)
+|++|++.+|........ .+..++..|.+.++. .+..+.. ....++.|+++.+... ..+......++|+++
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEE
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHH
Confidence 999999999964322222 233567778887665 4444432 1246888888854442 222222345678889
Q ss_pred EeeccccChHHHHHHhhcCCCCcEEEecCCCCCccccc-cccccceEEeccCCCccEEe
Q 011021 290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCKYLKVID 347 (495)
Q Consensus 290 ~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~l~ 347 (495)
.+.++..........+.++++|+.|++++| .++.++. .+.+|++|.+..+.+++.+.
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC
Confidence 887543222222334567899999999987 3555543 46788888888887776653
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.49 E-value=2.1e-08 Score=91.10 Aligned_cols=136 Identities=13% Similarity=0.025 Sum_probs=74.9
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--e
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L 232 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~ 232 (495)
...+|..+. +.+++|+|++|.+.... .+..+++|++|+|+++.++.-. ...+.+++.|++|++++|..... .
T Consensus 23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHh
Confidence 345665443 45678888888765432 3567888888888887763211 12356777888888877754221 1
Q ss_pred eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCc
Q 011021 233 CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 312 (495)
.+.++++|+.|+++++. .....+..+..+++|+.|+++++.++.... ..+..+++|+
T Consensus 100 ~~~~l~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~ 156 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNR----------------------ITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLS 156 (220)
T ss_dssp GGTTCSSCCEEECTTSC----------------------CCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCC
T ss_pred HhcCCcCCCEEECCCCc----------------------CCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCC
Confidence 23455666666666553 111111223345566666666555543211 1233455666
Q ss_pred EEEecCC
Q 011021 313 DLFVTRC 319 (495)
Q Consensus 313 ~L~L~~~ 319 (495)
.|++.+|
T Consensus 157 ~L~L~~N 163 (220)
T 2v70_A 157 TLNLLAN 163 (220)
T ss_dssp EEECCSC
T ss_pred EEEecCc
Confidence 6666554
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.48 E-value=3.9e-08 Score=89.26 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=87.9
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
..+++|+ +..+......-+..+..+++|++|+|++|.+...+ .+.++++|++|+|+++.++.- ....+.+++.|+
T Consensus 32 ~~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLK 108 (220)
T ss_dssp TTCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCC
T ss_pred CCCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCC
Confidence 4567777 54433222222233567899999999999876543 578899999999999988421 123367899999
Q ss_pred EEEEEecCCCcc--eeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccC
Q 011021 220 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (495)
Q Consensus 220 ~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 297 (495)
+|++++|..... ..+.++++|+.|+++++. .....+..+..+++|+.|++++|.+.
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ----------------------ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSC----------------------CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCc----------------------CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999974322 223456777777777663 11111223456888999999888765
Q ss_pred h
Q 011021 298 D 298 (495)
Q Consensus 298 ~ 298 (495)
.
T Consensus 167 c 167 (220)
T 2v70_A 167 C 167 (220)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.45 E-value=3.8e-07 Score=94.41 Aligned_cols=110 Identities=15% Similarity=0.047 Sum_probs=51.5
Q ss_pred CCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc-ccceEEEEeCCcceEEEEeec
Q 011021 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFY 270 (495)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~~~ 270 (495)
+|+.|+|+++.++. ++. .-+++|++|++++|.. ..++ ..+++|+.|++++|. ..+.. -..+|+.|+++.+
T Consensus 60 ~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~l-~~ip-~~l~~L~~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPD--NLPPQITVLEITQNAL-ISLP-ELPASLEYLDACDNRLSTLPE---LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSCC-SCCC-CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCCC-cccc-cccCCCCEEEccCCCCCCcch---hhcCCCEEECCCC
Confidence 67777777766632 211 0135677777766643 2333 344566666666554 11111 1125555555533
Q ss_pred CCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 271 GARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
.... .+. .+++|+.|++++|.++. + ...+++|+.|++++|
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~--l---p~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM--L---PELPTSLEVLSVRNN 170 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSS
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc--C---CCcCCCcCEEECCCC
Confidence 3221 111 34555555555555443 1 113445555555544
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.43 E-value=1e-07 Score=83.18 Aligned_cols=128 Identities=12% Similarity=-0.056 Sum_probs=73.1
Q ss_pred ccCCcceEEEEeccccCCCCCccCC-CCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCcc
Q 011021 166 FSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLK 241 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~ 241 (495)
..+.+|++|++++|.+...+....+ ++|+.|++++|.+++- ..+..++.|++|++++|.. ..+. +.++++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence 4567888888888877654433333 3788888887776431 2245566666666666642 2221 12334444
Q ss_pred EEEeccccccceEEEEeCCcceEEEEeecCCCCcee--EEeecCCCccEEEeeccccChH--HHHHHhhcCCCCcEEEec
Q 011021 242 IMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVT 317 (495)
Q Consensus 242 ~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~L~ 317 (495)
.|++++|. ... .+ ..++.+++|+.|+++++.++.. .....+..+|+|+.|+++
T Consensus 92 ~L~L~~N~----------------------i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 92 ELILTNNS----------------------LVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp EEECCSCC----------------------CCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred EEECCCCc----------------------CCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 44444432 211 11 1345677888888887776541 111235677888888887
Q ss_pred CCC
Q 011021 318 RCC 320 (495)
Q Consensus 318 ~~~ 320 (495)
.+.
T Consensus 149 ~n~ 151 (176)
T 1a9n_A 149 KVK 151 (176)
T ss_dssp ECC
T ss_pred cCC
Confidence 763
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.41 E-value=5.6e-08 Score=95.35 Aligned_cols=153 Identities=23% Similarity=0.208 Sum_probs=88.0
Q ss_pred cccCcccccCCcceEEEEeccccCCCC--Ccc-CCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce---
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--- 232 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--- 232 (495)
..+|..+. +.++.|+|++|.+...+ .+. ++++|++|+|+++.++.-. ...+.+++.|++|+|++|.. ..+
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 106 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDEF 106 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCHH
Confidence 34555443 45778888887765443 233 7788888888877763211 12255778888888887763 322
Q ss_pred eecCCCCccEEEeccccccceEEE----EeCCcceEEEEeecCCCCceeEE-e---ecCCCccEEEeeccccChHHHHHH
Q 011021 233 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVE-V---ARSPHLKKLDLVSVYFADNEFNHL 304 (495)
Q Consensus 233 ~i~~l~~L~~L~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~l 304 (495)
.+.++++|+.|+++++. +..+. ...++|+.|+++.+.... .+.. + ..+++|+.|++++|.++.-.. ..
T Consensus 107 ~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~ 182 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TD 182 (361)
T ss_dssp TTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCH-HH
T ss_pred HhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCH-HH
Confidence 23456778888887774 32221 145677777777444322 1111 1 457778888888777664221 12
Q ss_pred hhcCCC--CcEEEecCC
Q 011021 305 ISKFPS--LEDLFVTRC 319 (495)
Q Consensus 305 ~~~~~~--L~~L~L~~~ 319 (495)
+..+++ ++.|++.+|
T Consensus 183 ~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHSCHHHHTTEECCSS
T ss_pred hhhccHhhcceEEecCC
Confidence 234454 366777765
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.41 E-value=5.6e-08 Score=87.30 Aligned_cols=142 Identities=14% Similarity=0.093 Sum_probs=74.9
Q ss_pred eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEeccc
Q 011021 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF 248 (495)
Q Consensus 172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c 248 (495)
+.++.+++.+...+ ....++|++|+++++.++. .....+.+++.|++|++.+|... .+. +.++++|++|+++++
T Consensus 10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 34555555554433 3346789999999998842 12233578999999999998542 222 345678888888777
Q ss_pred cccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 249 SEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 249 ~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
. +..+. ...++|+.|+++.+.........++.+++|+.|+++++.+++. ....+..+++|+.|++.+|
T Consensus 87 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 87 Q--LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp C--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred c--CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCC
Confidence 4 21111 1234555555553322211111123445555555555444321 1111233445555555444
No 122
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=2.3e-07 Score=90.50 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEecccc---ccceEEEE-eCCcceEEEEeecC----CCCce--
Q 011021 207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFYG----ARRPR-- 276 (495)
Q Consensus 207 ~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~---~~l~~~~~-~~p~L~~L~l~~~~----~~~~~-- 276 (495)
.+..++..+|.|++|.|.+|.++....+. +++|++|.+..|. ..+..+.. .+|+|++|+++.+. .....
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 35677889999999999988543322233 6899999998775 11122221 57999999986211 11000
Q ss_pred ---eEEeecCCCccEEEeeccccChHHHHHHh--hcCCCCcEEEecCCCCCcc-----cc---ccccccceEEeccCC
Q 011021 277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPGK-----IK---ISSNQLKNLLFRSCK 341 (495)
Q Consensus 277 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~~L~~L~L~~~~~~~~-----i~---~~~~~L~~L~l~~c~ 341 (495)
....+.+|+|+.|++.++.+++.....+. ..+|+|++|+|+.|. ++. +. ..+++|+.|+++.|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11113589999999998888765544443 357899999998663 332 21 134667777776553
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=1.3e-08 Score=100.11 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=67.3
Q ss_pred CcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHH----hcCCCccEEEEEecCCCcce-------ee
Q 011021 169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLA----SECPLLEDLCFSNCWGLKHL-------CV 234 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~----~~~p~Le~L~L~~c~~l~~~-------~i 234 (495)
++|++|+|++|.+.... ....+++|++|+|++|.+++.....+. ..++.|++|+|++|.. +.. .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHH
Confidence 56666666666654322 223455666666666666544443332 2356666666666642 110 01
Q ss_pred cCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHH---hhcCCCC
Q 011021 235 SKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL---ISKFPSL 311 (495)
Q Consensus 235 ~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L 311 (495)
..+++|++|++++|. +... +. ......+...++|+.|++++|.+++.....+ +...++|
T Consensus 180 ~~~~~L~~L~Ls~N~--l~~~---------------g~-~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L 241 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG--LGDE---------------GL-ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241 (372)
T ss_dssp HTCSSCCEEECTTSS--CHHH---------------HH-HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred hcCCCcCEEeCCCCC--CCcH---------------HH-HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence 123445555554442 0000 00 0011123345677777777777776443333 3456777
Q ss_pred cEEEecCCC
Q 011021 312 EDLFVTRCC 320 (495)
Q Consensus 312 ~~L~L~~~~ 320 (495)
++|+|++|.
T Consensus 242 ~~L~Ls~N~ 250 (372)
T 3un9_A 242 ELLHLYFNE 250 (372)
T ss_dssp CEEECTTSS
T ss_pred CEEeccCCC
Confidence 888777763
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.32 E-value=1.3e-07 Score=86.28 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=91.6
Q ss_pred ceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEecc
Q 011021 171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS 247 (495)
Q Consensus 171 L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~ 247 (495)
-+.++.+++.+...+ ..-.++|++|+|+++.++.- ....+.++++|++|++++|.. ..+. +.++++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 355777777665544 23348999999999988431 123356789999999998864 3322 23456666666665
Q ss_pred ccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc-
Q 011021 248 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK- 326 (495)
Q Consensus 248 c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~- 326 (495)
+. ........++.+++|+.|+++++.++. +...+..+++|+.|++++|. +..+.
T Consensus 98 N~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~ 152 (229)
T 3e6j_A 98 NQ----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPH 152 (229)
T ss_dssp SC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCT
T ss_pred Cc----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCH
Confidence 53 111111224568999999999998874 22234688999999999873 33332
Q ss_pred ---ccccccceEEeccCC
Q 011021 327 ---ISSNQLKNLLFRSCK 341 (495)
Q Consensus 327 ---~~~~~L~~L~l~~c~ 341 (495)
...++|+.|.+.+.+
T Consensus 153 ~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTCTTCCEEECTTSC
T ss_pred HHHhCCCCCCEEEeeCCC
Confidence 234677777776554
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=9.3e-08 Score=86.74 Aligned_cols=144 Identities=10% Similarity=-0.061 Sum_probs=87.5
Q ss_pred eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc
Q 011021 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~ 249 (495)
+.++.+++.+...+. .-.++|+.|+|+++.++.-. ...+.++++|++|++++|..... -.+.++++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777776655441 12368999999998873211 12356788888888888753211 123345566666665542
Q ss_pred ccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc---
Q 011021 250 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK--- 326 (495)
Q Consensus 250 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~--- 326 (495)
...-....+.++++|+.|+++++.++.... ..+..+++|+.|++++|.. ..+.
T Consensus 92 ----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~ 147 (220)
T 2v9t_B 92 ----------------------ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKL-QTIAKGT 147 (220)
T ss_dssp ----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-SCCCTTT
T ss_pred ----------------------CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcC-CEECHHH
Confidence 211111124578999999999998876322 2356789999999998843 2222
Q ss_pred -ccccccceEEeccCC
Q 011021 327 -ISSNQLKNLLFRSCK 341 (495)
Q Consensus 327 -~~~~~L~~L~l~~c~ 341 (495)
...++|+.|.+.+.+
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 134567777766544
No 126
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=1.5e-06 Score=84.77 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=102.7
Q ss_pred cccceEEEEEeccCCC--CChhHHHHHHHHHH-HcCceEeEEEeecCCCc--------ccccCcccccCCcceEEEEecc
Q 011021 111 FCIQKFRLFLTFLDVK--GSAPIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLPQAIFSANSVTNLRLVWC 179 (495)
Q Consensus 111 ~~l~~l~l~~~~~~~~--~~~~~~~~wi~~a~-~~~l~~L~l~l~~~~~~--------~~~lp~~l~~~~~L~~L~L~~c 179 (495)
..++.+.+..-. +. .....+..++..+. ..+++.|. +...... ...++..+..+++|+.|.|++|
T Consensus 107 ~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 107 PSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred hhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 346666655321 22 11124445544332 37999998 4221110 1134455556799999999987
Q ss_pred c-cCCCCCccCCCCCcEEEeeeEeeChHHHHHHH-hcCCCccEEEEEecCC-------Ccce----eecCCCCccEEEec
Q 011021 180 R-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLA-SECPLLEDLCFSNCWG-------LKHL----CVSKASKLKIMEIR 246 (495)
Q Consensus 180 ~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~-~~~p~Le~L~L~~c~~-------l~~~----~i~~l~~L~~L~i~ 246 (495)
. +..+ . ...++|++|+|..+.++...+..+. ..+|+|+.|+|..+.. +..+ ....+|+|+.|.+.
T Consensus 183 ~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 183 NNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260 (362)
T ss_dssp BTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEE
T ss_pred CCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCC
Confidence 3 3222 2 3489999999999888877777765 3799999999974311 1000 11134555555555
Q ss_pred cccccceEEEEeCCcceEEEEeecCCCCc---eeEEeecCCCccEEEeeccccChHHHHHHh---hcCCCCcEEEecCC
Q 011021 247 SFSEEIEIVEISVPSLQQLTLLFYGARRP---RVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRC 319 (495)
Q Consensus 247 ~c~~~l~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~ 319 (495)
+|. .... .....+.+|+|++|+|+++.+++.....+. ..+++|+.|+++.|
T Consensus 261 ~~~----------------------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 261 DAE----------------------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCT----------------------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCC----------------------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 543 1100 000112366777777777777765444433 34677777777766
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=5e-07 Score=93.83 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=52.1
Q ss_pred CCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--eecCCCCccEEEecccc-ccceEEEEeCCcceEEEEe
Q 011021 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (495)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~i~~l~~L~~L~i~~c~-~~l~~~~~~~p~L~~L~l~ 268 (495)
.|+.|+|++|.++. ++. +.++++|+.|++++|... .+ .+.++++|+.|+++++. .++. ....+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 46666666665532 223 455666666666666432 21 22344555555555443 1111 00023344444444
Q ss_pred ecCCCCce-eEEeecCCCccEEEeeccccChH--HHHHHhhcCCCCcEEE
Q 011021 269 FYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLF 315 (495)
Q Consensus 269 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~ 315 (495)
.+...... +..++.+++|+.|++++|.+++. ....+...+|+|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 22222211 33344555566666655554431 1112233355555553
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.12 E-value=3.8e-07 Score=89.33 Aligned_cols=151 Identities=16% Similarity=0.072 Sum_probs=102.4
Q ss_pred CceEeEEEeecCCCcccccCcccc--cCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 143 GVRELDFENITDENTVYTLPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.++.|+ +..+ ....++...+ .+++|++|+|++|.+...+ .+.++++|++|+|++|.++.- ....+.++++|
T Consensus 40 ~l~~L~--Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLD--LSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TCSEEE--CCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTC
T ss_pred CCCEEE--CCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCC
Confidence 466777 5432 2334554444 6899999999999886544 577899999999999988321 12236789999
Q ss_pred cEEEEEecCCCcc--eeecCCCCccEEEecccc-ccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCC--ccEE
Q 011021 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPH--LKKL 289 (495)
Q Consensus 219 e~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~-~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L 289 (495)
++|+|++|..... ..+.++++|+.|+++++. ..+..-. ...++|+.|+++++....-....+..++. ++.|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence 9999999974321 234578999999999886 2211111 24789999999965543222223455665 4889
Q ss_pred EeeccccCh
Q 011021 290 DLVSVYFAD 298 (495)
Q Consensus 290 ~l~~~~~~~ 298 (495)
++.+|.+..
T Consensus 195 ~l~~N~~~C 203 (361)
T 2xot_A 195 YLHNNPLEC 203 (361)
T ss_dssp ECCSSCEEC
T ss_pred EecCCCccC
Confidence 999988764
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=3e-07 Score=90.35 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=89.1
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--Cc-----cCCCCCcEEEeeeEeeChHHHH---HH
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DS-----IMLCSLKKLTLERVCLDEQMVQ---KL 211 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~-----~~l~~L~~L~L~~~~~~~~~l~---~l 211 (495)
.++++|+ +..+......+......+++|++|+|++|.+.... .. ...++|++|+|++|.+++.... ..
T Consensus 101 ~~L~~L~--Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVN--LASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEE--CTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEE--ecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 5788888 65443333222222223578999999999886543 11 2468999999999999654444 44
Q ss_pred HhcCCCccEEEEEecCCCcce-------eecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCC----ceeEEe
Q 011021 212 ASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR----PRVVEV 280 (495)
Q Consensus 212 ~~~~p~Le~L~L~~c~~l~~~-------~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~----~~~~~~ 280 (495)
+..++.|++|+|++|.. +.. .+...++|+.|++++|. ... .....+
T Consensus 179 L~~~~~L~~L~Ls~N~l-~~~g~~~L~~~L~~~~~L~~L~Ls~N~----------------------i~~~g~~~l~~~L 235 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNVAYNG----------------------AGDTAALALARAA 235 (372)
T ss_dssp HHTCSSCCEEECTTSSC-HHHHHHHHHHHGGGCSCCCEEECCSSC----------------------CCHHHHHHHHHHH
T ss_pred HhcCCCcCEEeCCCCCC-CcHHHHHHHHHHhcCCCcCeEECCCCC----------------------CCHHHHHHHHHHH
Confidence 57899999999999973 321 12234566666666553 211 011123
Q ss_pred ecCCCccEEEeeccccChHHHHHHh
Q 011021 281 ARSPHLKKLDLVSVYFADNEFNHLI 305 (495)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~l~ 305 (495)
...++|++|++++|.+++.....+.
T Consensus 236 ~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 236 REHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HhCCCCCEEeccCCCCCHHHHHHHH
Confidence 3568899999999998886665543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.04 E-value=9.3e-07 Score=78.21 Aligned_cols=66 Identities=21% Similarity=0.058 Sum_probs=37.9
Q ss_pred cccCcccccCCcceEEEEeccccCCCC---CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
..+|..+.. +|++|+++++.+...+ .+..+++|++|+|+++.++.- ....+.+++.|++|++++|.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 455554432 6777777777665433 145677777777777766321 11224456666666666654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.03 E-value=1.6e-06 Score=75.38 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=63.2
Q ss_pred CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEE
Q 011021 186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQL 265 (495)
Q Consensus 186 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L 265 (495)
....+++|+.|+++++.++. ++.+...+|.|++|++++|..-+...+.+++ +|++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~----------------------~L~~L 69 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLR----------------------RLKTL 69 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCS----------------------SCCEE
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCC----------------------CCCEE
Confidence 34556777888887777642 2233333447777777776432211222334 44444
Q ss_pred EEeecCCCCceeEE-eecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 266 TLLFYGARRPRVVE-VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 266 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
+++++.... .+.. ++.+++|+.|++++|.+++-.....+..+++|+.|++.+|+
T Consensus 70 ~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 70 LVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCCcccc-cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 444322211 1111 35788999999999888652111235678999999999874
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.02 E-value=3.2e-07 Score=81.62 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=69.5
Q ss_pred CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceeecCCCCccEEEeccccccceEEEEeCCcceEE
Q 011021 186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQL 265 (495)
Q Consensus 186 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L 265 (495)
.+..+++|++|+++++.++. ++ .+.++++|++|++++|... .+ + .....+++|+.|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l-----~---------------~~~~~~~~L~~L 98 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KI-----E---------------NLDAVADTLEEL 98 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SC-----S---------------SHHHHHHHCSEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cc-----c---------------chhhcCCcCCEE
Confidence 34567788888888887743 22 3556777777777776321 11 1 000123566666
Q ss_pred EEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCC
Q 011021 266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (495)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 320 (495)
+++++.... .+ .++.+++|+.|+++++.+++-.....+..+++|+.|++.+|.
T Consensus 99 ~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 99 WISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 666544432 22 456788999999999998863332446789999999999874
No 133
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=5.2e-06 Score=71.39 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=39.9
Q ss_pred eecCCCccEEEeeccc-cChHHHHHHhhc---CCCCcEEEecCCCCCcccc----ccccccceEEeccCCCcc
Q 011021 280 VARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLK 344 (495)
Q Consensus 280 ~~~~~~L~~L~l~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~i~----~~~~~L~~L~l~~c~~l~ 344 (495)
+.+|++|++|+|++|. +++..+..+... +++|+.|+|++|..++.-. ..+++|+.|++++|+.++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 3467777777777664 666666665442 4567777777776555321 135666666666666554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=1.5e-05 Score=76.84 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=18.6
Q ss_pred CccEEEeeccccChHHHHHHhhcCCCCcEEEecCC
Q 011021 285 HLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 319 (495)
+++.+.+.+. +....+..+...+++|+.+++.++
T Consensus 203 ~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 203 DINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp GCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred ccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC
Confidence 4445555443 223334444445788888888764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.95 E-value=6.3e-06 Score=71.64 Aligned_cols=66 Identities=21% Similarity=0.130 Sum_probs=38.3
Q ss_pred cccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
..+|..+. ++|++|+++++.+...+ .+..+++|++|+++++.++.- ....+.+++.|++|++++|.
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC
Confidence 34454332 57777777777765433 345677777777777766311 11223456666666666664
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.89 E-value=2.3e-06 Score=78.75 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=32.5
Q ss_pred cCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 19 ~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
-|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999963
No 137
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.86 E-value=6.4e-06 Score=76.72 Aligned_cols=37 Identities=22% Similarity=0.551 Sum_probs=34.5
Q ss_pred CCcCCCCChHHHHHHhcCCChhHHH-hhhcccccchhh
Q 011021 17 MDRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQL 53 (495)
Q Consensus 17 ~d~is~LPd~vL~~Ils~L~~~d~~-rts~lSkrWr~l 53 (495)
...+..||||++.+||++||.++++ |++.|||+||.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999 999999999986
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.85 E-value=4.3e-06 Score=73.94 Aligned_cols=58 Identities=17% Similarity=0.016 Sum_probs=27.7
Q ss_pred CcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecC
Q 011021 169 NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (495)
Q Consensus 169 ~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~ 227 (495)
++|++|+++++.+...+ .+..+++|++|+|+++.++.- ....+.+++.|++|++++|.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc
Confidence 45666666665554332 344555555555555555210 01123344555555555543
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=1e-05 Score=83.91 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=55.0
Q ss_pred CceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEE
Q 011021 143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 221 (495)
.++.|+ +..+ .-..+|. +..+++|+.|+|++|.+...+ .++++++|+.|+|++|.++. ++ -+.+++.|+.|
T Consensus 442 ~L~~L~--Ls~n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLH--LAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEE--CTTS--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred CceEEE--ecCC--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence 455555 4322 2223554 556667777777776665433 45566777777777666632 22 35566667777
Q ss_pred EEEecCCCcc---eeecCCCCccEEEecccc
Q 011021 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 222 ~L~~c~~l~~---~~i~~l~~L~~L~i~~c~ 249 (495)
++++|...+. ..+.++++|+.|+++++.
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 7766643221 123345666666666554
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.84 E-value=6.6e-06 Score=72.65 Aligned_cols=124 Identities=16% Similarity=0.043 Sum_probs=86.5
Q ss_pred eEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcc--eeecCCCCccEEEecccc
Q 011021 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS 249 (495)
Q Consensus 172 ~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--~~i~~l~~L~~L~i~~c~ 249 (495)
++++++++.+...+. .-.++|++|+++++.++.-.....+.+++.|++|++++|...+. ..+.++++|+.|+++++.
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 678888887765441 22348999999999884322122367889999999999864332 234567899999999885
Q ss_pred ccceEEE---E-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021 250 EEIEIVE---I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (495)
Q Consensus 250 ~~l~~~~---~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (495)
+..+. + ..++|++|+++++......+..++.+++|+.|++++|.+..
T Consensus 90 --l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 --IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp --CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred --CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 33332 2 46889999998655543334456778999999999988764
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.81 E-value=6.4e-06 Score=71.58 Aligned_cols=76 Identities=21% Similarity=0.133 Sum_probs=49.8
Q ss_pred ceEEEEeccccCCCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee---ecCCCCccEEEecc
Q 011021 171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS 247 (495)
Q Consensus 171 L~~L~L~~c~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~---i~~l~~L~~L~i~~ 247 (495)
.+.++++++.+...+ ....++|++|+++++.++. .....+.+++.|++|++++|.. ..+. +.++++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCC
Confidence 467777777766544 3345799999999988742 1122356788999999988853 2222 23556777777766
Q ss_pred cc
Q 011021 248 FS 249 (495)
Q Consensus 248 c~ 249 (495)
+.
T Consensus 86 N~ 87 (177)
T 2o6r_A 86 NK 87 (177)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.80 E-value=2e-05 Score=69.51 Aligned_cols=101 Identities=16% Similarity=0.008 Sum_probs=72.0
Q ss_pred cCceEeEEEeecCCCcccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
.++++|+ +..+ ....+|..+..+++|++|+|++|.+.... .+.++++|++|+|++|.++.-. ...+.+++.|+
T Consensus 31 ~~l~~L~--L~~n--~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELY--LDGN--QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEE--CCSS--CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCC
T ss_pred CCCCEEE--CCCC--cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCC
Confidence 3678887 5433 23467777888999999999999987654 4778999999999999884211 12356889999
Q ss_pred EEEEEecCCCccee---ecCCCCccEEEeccc
Q 011021 220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSF 248 (495)
Q Consensus 220 ~L~L~~c~~l~~~~---i~~l~~L~~L~i~~c 248 (495)
+|++++|... .+. +..+++|+.|++.++
T Consensus 106 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp EEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence 9999998642 222 234566666666654
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.78 E-value=1.8e-06 Score=92.53 Aligned_cols=111 Identities=13% Similarity=-0.019 Sum_probs=60.9
Q ss_pred CcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--ecCCC
Q 011021 162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKAS 238 (495)
Q Consensus 162 p~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~--i~~l~ 238 (495)
|..+..+++|+.|+|++|.+...+ ....+++|++|+|++|.++ .++.-+.++++|+.|+|++|... .++ +.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-- 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-- 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG--
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC--
Confidence 334444566666666666654333 3446666666666666653 12223455666666666666422 211 122
Q ss_pred CccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh
Q 011021 239 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (495)
Q Consensus 239 ~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 298 (495)
+++|++|+++.+... ..+..++.+++|+.|+|++|.++.
T Consensus 292 --------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 --------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp --------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred --------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 345555555533332 334446788899999999988875
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=2.9e-06 Score=81.82 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=29.4
Q ss_pred cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCcccc
Q 011021 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK 326 (495)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~i~ 326 (495)
.|++|+.+++.++.++. .....+.+|++|+.+++..+ +..|+
T Consensus 224 ~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~ 265 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIG 265 (329)
T ss_dssp HCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEEC
T ss_pred hcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceeh
Confidence 38999999999876553 11233567899999999874 44443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.64 E-value=3.6e-05 Score=66.35 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=57.1
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcce--e
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C 233 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~--~ 233 (495)
-..+|..+. ++|++|+|++|.+.... .+.++++|++|+|++|.++. .....+.++++|++|+|++|...... .
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 345665553 77888888888876543 46778888888888888732 11223467888888888887532211 1
Q ss_pred ecCCCCccEEEecccc
Q 011021 234 VSKASKLKIMEIRSFS 249 (495)
Q Consensus 234 i~~l~~L~~L~i~~c~ 249 (495)
+.++++|+.|++.++.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 3345666666666553
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.61 E-value=7.7e-06 Score=87.59 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=44.5
Q ss_pred eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecCCCCCc
Q 011021 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (495)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 323 (495)
.+++|+.|+++++... ..+..++.+++|+.|+|++|.++. +...+.++++|+.|+|++|...+
T Consensus 268 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 268 NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence 3456666666644433 345567789999999999998763 22225678999999999986544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.59 E-value=4.5e-05 Score=66.04 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=55.4
Q ss_pred ccccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCccee--
Q 011021 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~-- 233 (495)
-..+|..+. ++|++|+|++|.+...+ .+.++++|++|+|++|.++. .....+.++++|++|+|++|..- .+.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~-~l~~~ 99 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRG 99 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccc-eeCHH
Confidence 345666553 77888888888776543 46678888888888887732 11123456788888888877532 221
Q ss_pred -ecCCCCccEEEecccc
Q 011021 234 -VSKASKLKIMEIRSFS 249 (495)
Q Consensus 234 -i~~l~~L~~L~i~~c~ 249 (495)
+.++++|+.|++.++.
T Consensus 100 ~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCSEEECCSSC
T ss_pred HhccccCCCEEEeCCCC
Confidence 3345666666665543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.55 E-value=4.1e-05 Score=75.76 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=67.8
Q ss_pred cCcccccCCcceEEEEeccccCCCC-CccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEecCCCcceeec--
Q 011021 161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-- 235 (495)
Q Consensus 161 lp~~l~~~~~L~~L~L~~c~l~~~~-~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i~-- 235 (495)
++...|...+|+.+.+...--.... .+.+ .+|+.+.+... .+... .+.+|++|+.+.+.++. +..+.-.
T Consensus 127 I~~~aF~~~~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~-l~~I~~~aF 200 (401)
T 4fdw_A 127 IPKDAFRNSQIAKVVLNEGLKSIGDMAFFN-STVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTK-ITKLPASTF 200 (401)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTT-CCCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSC-CSEECTTTT
T ss_pred ehHhhcccCCccEEEeCCCccEECHHhcCC-CCceEEEeCCCccEehHH----HhhCcccCCeeecCCCc-ceEechhhE
Confidence 3333343336777777654111111 2233 35777776541 11222 24577777777776543 2221111
Q ss_pred CCCCccEEEeccccccceEEEE----eCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccChHHHHHHhhcCCCC
Q 011021 236 KASKLKIMEIRSFSEEIEIVEI----SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (495)
Q Consensus 236 ~l~~L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 311 (495)
.+.+|+.+.+... +..+.- .+++|+.+.+.. +...-....+.+ .+|+.+.+... ++. .-...+.+|++|
T Consensus 201 ~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~-i~~-I~~~aF~~c~~L 273 (401)
T 4fdw_A 201 VYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNG-VTN-IASRAFYYCPEL 273 (401)
T ss_dssp TTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEETT-CCE-ECTTTTTTCTTC
T ss_pred eecccCEEEeCCc---hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCCC-ccE-EChhHhhCCCCC
Confidence 1356666666432 222221 456677766651 110000001222 46777777422 211 001224567888
Q ss_pred cEEEecCC
Q 011021 312 EDLFVTRC 319 (495)
Q Consensus 312 ~~L~L~~~ 319 (495)
+.+.+.++
T Consensus 274 ~~l~l~~~ 281 (401)
T 4fdw_A 274 AEVTTYGS 281 (401)
T ss_dssp CEEEEESS
T ss_pred CEEEeCCc
Confidence 88888764
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.50 E-value=2.1e-05 Score=79.18 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=36.5
Q ss_pred cCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021 15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 15 ~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
-..|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999875
No 150
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.39 E-value=7.1e-05 Score=74.96 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=37.0
Q ss_pred ccCCCcCCCCChHHHHHHhcCCChhHHHhhhcccccchhh
Q 011021 14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 14 ~~~~d~is~LPd~vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
....|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 4467999999999999999999999999999999999863
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00011 Score=64.25 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=62.6
Q ss_pred cCCCCCcEEEeeeE-eeChHHHHH---HHhcCCCccEEEEEecCCCcc--e----eecCCCCccEEEeccccccceEEEE
Q 011021 188 IMLCSLKKLTLERV-CLDEQMVQK---LASECPLLEDLCFSNCWGLKH--L----CVSKASKLKIMEIRSFSEEIEIVEI 257 (495)
Q Consensus 188 ~~l~~L~~L~L~~~-~~~~~~l~~---l~~~~p~Le~L~L~~c~~l~~--~----~i~~l~~L~~L~i~~c~~~l~~~~~ 257 (495)
...+.|++|+|+++ .+++.+... .+..++.|++|+|++|..-.. . .+...++|++|++++|.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-------- 104 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-------- 104 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--------
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--------
Confidence 45677888888877 775554443 345567777777777653211 0 01112344444444432
Q ss_pred eCCcceEEEEeecCCCCc----eeEEeecCCCccEEEe--eccccChHHH---HHHhhcCCCCcEEEecCC
Q 011021 258 SVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDL--VSVYFADNEF---NHLISKFPSLEDLFVTRC 319 (495)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~---~~l~~~~~~L~~L~L~~~ 319 (495)
.... ....+...++|++|++ .++.+++... ...+...++|+.|++++|
T Consensus 105 --------------i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 --------------ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp --------------CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred --------------CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 2111 1112345677888888 7788877543 334456678888888876
No 152
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.17 E-value=7.1e-05 Score=74.83 Aligned_cols=39 Identities=31% Similarity=0.627 Sum_probs=36.0
Q ss_pred cCCCcCCCCChH----HHHHHhcCCChhHHHhhhcccccchhh
Q 011021 15 VAMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL 53 (495)
Q Consensus 15 ~~~d~is~LPd~----vL~~Ils~L~~~d~~rts~lSkrWr~l 53 (495)
-..|.|+.||+| ++.+||+||+.+++++++.|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357999999999 999999999999999999999999953
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.01 E-value=0.0012 Score=64.94 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=15.9
Q ss_pred cCCCccEEEeeccccChHHHHHHhhcCCCCcEEEecC
Q 011021 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (495)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~L~~ 318 (495)
.++.++.+......+.+. ....+.+|+.+.+..
T Consensus 274 ~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLD 306 (394)
T ss_dssp TCTTCCEEEECSSEECTT----TTTTCTTCCEEEECT
T ss_pred cccccceeccCceeeccc----ccccccccccccccc
Confidence 445555555443333221 234566666666643
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.98 E-value=0.00011 Score=64.15 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCcceEEEEecc-ccCCCC------CccCCCCCcEEEeeeEeeChHHHH---HHHhcCCCccEEEEEecC
Q 011021 168 ANSVTNLRLVWC-RLEQPF------DSIMLCSLKKLTLERVCLDEQMVQ---KLASECPLLEDLCFSNCW 227 (495)
Q Consensus 168 ~~~L~~L~L~~c-~l~~~~------~~~~l~~L~~L~L~~~~~~~~~l~---~l~~~~p~Le~L~L~~c~ 227 (495)
+++|++|+|++| .+.... .....++|++|+|++|.+++.+.. ..+...+.|++|+|++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 455666666665 543321 223456666677766666544332 334456667777777665
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.86 E-value=0.00053 Score=66.25 Aligned_cols=89 Identities=19% Similarity=0.109 Sum_probs=62.3
Q ss_pred ccccCcccccCCcceEEEEec-cccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCCCcceee
Q 011021 158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCV 234 (495)
Q Consensus 158 ~~~lp~~l~~~~~L~~L~L~~-c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~~~i 234 (495)
-..+|. +..+++|++|+|++ |.+...+ .+.++++|+.|+|++|.+.. .....+.++++|++|+|++|.. ..+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence 456888 77889999999996 8876544 46789999999999998842 1123467899999999998864 23222
Q ss_pred c--CCCCccEEEecccc
Q 011021 235 S--KASKLKIMEIRSFS 249 (495)
Q Consensus 235 ~--~l~~L~~L~i~~c~ 249 (495)
. ...+|+.|.+.++.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 1 11237777776553
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.76 E-value=0.0011 Score=65.42 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=97.1
Q ss_pred cccCcccccCCcceEEEEeccccCCC--CCccCCCCCcEEEeeeEee---ChHHHHHHHhcCCCccEEEEEecCCCcc--
Q 011021 159 YTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKH-- 231 (495)
Q Consensus 159 ~~lp~~l~~~~~L~~L~L~~c~l~~~--~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~L~~c~~l~~-- 231 (495)
..++...|...+|+.+.+.. .+... ..+.+|++|+.+++..+.+ .... + .|+.|+++.+... +..
T Consensus 147 ~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a----F-~~~~L~~l~lp~~--l~~I~ 218 (401)
T 4fdw_A 147 KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST----F-VYAGIEEVLLPVT--LKEIG 218 (401)
T ss_dssp CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT----T-TTCCCSEEECCTT--CCEEC
T ss_pred cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh----E-eecccCEEEeCCc--hheeh
Confidence 34555555545788888876 22211 1567889999999986654 3222 2 3688999988743 332
Q ss_pred -eeecCCCCccEEEeccccccceEEEEeCCcceEEEEeecCCCCceeEEeecCCCccEEEeeccccCh----HHHHHHhh
Q 011021 232 -LCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD----NEFNHLIS 306 (495)
Q Consensus 232 -~~i~~l~~L~~L~i~~c~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~ 306 (495)
-...+|++|+.+.+......+..-+....+|+.+.+. .....-....+.+|++|+.+.+.++.... ......+.
T Consensus 219 ~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 2344678888888865321111111223578888886 22211112235578999999998765431 01123356
Q ss_pred cCCCCcEEEecCCCCCccccc----cccccceEEe
Q 011021 307 KFPSLEDLFVTRCCLPGKIKI----SSNQLKNLLF 337 (495)
Q Consensus 307 ~~~~L~~L~L~~~~~~~~i~~----~~~~L~~L~l 337 (495)
+|++|+.+.+.. .+..+.. .+.+|+.+.+
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 788999998874 2444432 2345555544
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.73 E-value=0.00082 Score=57.93 Aligned_cols=82 Identities=15% Similarity=0.020 Sum_probs=60.8
Q ss_pred cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.+++.|+ +..+ ....+ |..+..+++|++|+|++|.+...+ .+..+++|++|+|++|.+.. .....+..+++|
T Consensus 33 ~~L~~L~--Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLW--LNNN--QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEE--CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEE--eCCC--CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 4678887 5432 22344 445667899999999999987655 35789999999999998842 112336789999
Q ss_pred cEEEEEecCC
Q 011021 219 EDLCFSNCWG 228 (495)
Q Consensus 219 e~L~L~~c~~ 228 (495)
++|++.+|+.
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999999864
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.67 E-value=0.00094 Score=57.30 Aligned_cols=82 Identities=17% Similarity=0.028 Sum_probs=60.1
Q ss_pred cCceEeEEEeecCCCccccc-CcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCc
Q 011021 142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 218 (495)
.+++.|+ +..+ ....+ |..+..+++|++|+|++|.+...+ .+.++++|++|+|++|.+..- ....+.++++|
T Consensus 30 ~~l~~L~--L~~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLY--LYDN--QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEE--CCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEE--cCCC--cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCC
Confidence 4677777 5432 23344 445667899999999999987655 357899999999999988421 12236789999
Q ss_pred cEEEEEecCC
Q 011021 219 EDLCFSNCWG 228 (495)
Q Consensus 219 e~L~L~~c~~ 228 (495)
++|++.+|+.
T Consensus 105 ~~L~L~~N~~ 114 (170)
T 3g39_A 105 THIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeCCCCC
Confidence 9999999864
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.19 E-value=0.0033 Score=61.86 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=34.0
Q ss_pred cCCcceEEEEeccc---cCCCC--CccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEecCC-CcceeecCCC
Q 011021 167 SANSVTNLRLVWCR---LEQPF--DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNCWG-LKHLCVSKAS 238 (495)
Q Consensus 167 ~~~~L~~L~L~~c~---l~~~~--~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c~~-l~~~~i~~l~ 238 (495)
.|.+|+.+.+..+. +..-+ .+.++.+|+.+.+... .++.. .+.+|+.|+.+.+..... ++.....+|.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~----aF~~c~~L~~i~lp~~~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSE----AFHHCEELDTVTIPEGVTSVADGMFSYCY 160 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhh----hhhhhcccccccccceeeeecccceeccc
Confidence 36677777665542 21111 3445556665554322 11211 134566666666643211 1112222445
Q ss_pred CccEEEec
Q 011021 239 KLKIMEIR 246 (495)
Q Consensus 239 ~L~~L~i~ 246 (495)
+|+.+.+.
T Consensus 161 ~L~~i~~~ 168 (394)
T 4gt6_A 161 SLHTVTLP 168 (394)
T ss_dssp TCCEEECC
T ss_pred cccccccc
Confidence 55555554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.81 E-value=0.0052 Score=60.42 Aligned_cols=39 Identities=8% Similarity=0.232 Sum_probs=19.3
Q ss_pred HHhccCCccceEEEEEEecceecccccccccCCCCCCccceeEEEe
Q 011021 394 KFLGVSKQIESLKLSLYSTKVLYNLDELSECSPSLPLQVENLELHT 439 (495)
Q Consensus 394 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~~~~~~p~~L~~L~l~~ 439 (495)
..+.+|++|+.+++ ..+-..+....|.++ ++|+.+.+..
T Consensus 337 ~aF~~c~~L~~i~l--p~~l~~I~~~aF~~C-----~~L~~i~lp~ 375 (394)
T 4fs7_A 337 RSFRGCTSLSNINF--PLSLRKIGANAFQGC-----INLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECC--CTTCCEECTTTBTTC-----TTCCEEEEEG
T ss_pred HhccCCCCCCEEEE--CccccEehHHHhhCC-----CCCCEEEECC
Confidence 34566666664444 211111234455555 6666666653
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.65 E-value=0.0028 Score=58.50 Aligned_cols=36 Identities=25% Similarity=0.026 Sum_probs=17.3
Q ss_pred CCcceEEEEeccccCCCC----CccCCCCCcEEEeeeEee
Q 011021 168 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL 203 (495)
Q Consensus 168 ~~~L~~L~L~~c~l~~~~----~~~~l~~L~~L~L~~~~~ 203 (495)
+++|++|+|++|.+.... ....+++|+.|+|++|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 345555555555544321 112455555555555555
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.13 E-value=0.0073 Score=58.13 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=55.7
Q ss_pred CceEeEEEeecCCCcccccC-cccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEeeChHHHHHHHhcCCCcc
Q 011021 143 GVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (495)
Q Consensus 143 ~l~~L~l~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 219 (495)
++++|+ +.. ......+| ..+..+++|++|+|++|.+...+ .+.++++|+.|+|++|.++.- ....+...+ |+
T Consensus 32 ~L~~L~--l~~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~ 106 (347)
T 2ifg_A 32 NLTELY--IEN-QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ 106 (347)
T ss_dssp CCSEEE--CCS-CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred CeeEEE--ccC-CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence 577777 532 01233445 45667899999999999886544 467899999999999988421 112233444 99
Q ss_pred EEEEEecCC
Q 011021 220 DLCFSNCWG 228 (495)
Q Consensus 220 ~L~L~~c~~ 228 (495)
.|++.+|..
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 999998864
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.91 E-value=0.015 Score=53.56 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=56.2
Q ss_pred cCceEeEEEeecCCCcc-cccCcccccCCcceEEEEeccccCCCCCccCCC--CCcEEEeeeEeeCh------HHHHHHH
Q 011021 142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLC--SLKKLTLERVCLDE------QMVQKLA 212 (495)
Q Consensus 142 ~~l~~L~l~l~~~~~~~-~~lp~~l~~~~~L~~L~L~~c~l~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~l~ 212 (495)
..++.|+ +..+.... ..+|..+..+++|+.|+|++|.+........+. +|++|+|++|.+.. .....++
T Consensus 170 ~~L~~L~--Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLN--LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEE--CTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEE--CCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 5888888 65433222 245566667899999999999987643333344 99999999998843 3334677
Q ss_pred hcCCCccEEE
Q 011021 213 SECPLLEDLC 222 (495)
Q Consensus 213 ~~~p~Le~L~ 222 (495)
..+|+|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 8899998875
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.32 E-value=0.23 Score=43.16 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=54.1
Q ss_pred HHHHHHHHHHH--cCceEeEEEeecC-C---CcccccCcccccCCcceEEEEeccccCCCC------CccCCCCCcEEEe
Q 011021 131 IVDRWIRLAVE--NGVRELDFENITD-E---NTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTL 198 (495)
Q Consensus 131 ~~~~wi~~a~~--~~l~~L~l~l~~~-~---~~~~~lp~~l~~~~~L~~L~L~~c~l~~~~------~~~~l~~L~~L~L 198 (495)
+++..+..+.. ..+++|+ +... . .+...+-..+....+|+.|+|++|.+.... ....-+.|++|+|
T Consensus 28 ~v~~~l~~ll~~n~~L~~L~--L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 28 DVESCINRLREDDTDLKEVN--INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp CHHHHHHHHHTTCSSCCEEE--CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHhcCCCccEEE--CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 56677776665 3566766 4321 1 111233334444567888888888765432 1223467888888
Q ss_pred eeEeeChHHHHHHH---hcCCCccEEEEEec
Q 011021 199 ERVCLDEQMVQKLA---SECPLLEDLCFSNC 226 (495)
Q Consensus 199 ~~~~~~~~~l~~l~---~~~p~Le~L~L~~c 226 (495)
++|.+++.+...+. ..-..|++|+|.++
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 88888666655543 33445666666544
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.19 E-value=0.57 Score=45.58 Aligned_cols=122 Identities=12% Similarity=0.119 Sum_probs=68.6
Q ss_pred ccCCcceEEEEeccccCCC-CCccCCCCCcEEEeeeE--eeChHHHHHHHhcCCCccEEEEEec-CCCcceeecCCCCcc
Q 011021 166 FSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERV--CLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLK 241 (495)
Q Consensus 166 ~~~~~L~~L~L~~c~l~~~-~~~~~l~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~~~i~~l~~L~ 241 (495)
..|..|+.+.+........ ..+.++++|+.+.+... .+.+. .+.+|++|+++.|... ..++.-...+|.+|+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred eecccccEEecccccceecCcccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence 3478899998876432221 14667889999988642 22332 3678999999998643 112333455788999
Q ss_pred EEEeccccccceEEEE-eCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc
Q 011021 242 IMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (495)
Q Consensus 242 ~L~i~~c~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 294 (495)
++.+-.....+..-+. .|++|+.+.+. +... ....+..+.+|+.+.+..+
T Consensus 338 ~i~ip~sv~~I~~~aF~~C~~L~~i~~~--~~~~-~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSSVTKIPESAFSNCTALNNIEYS--GSRS-QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTTCCBCCGGGGTTCTTCCEEEES--SCHH-HHHTCBCCCCC--------
T ss_pred EEEECcccCEEhHhHhhCCCCCCEEEEC--Ccee-ehhhhhccCCCCEEEeCCC
Confidence 9988543212222222 67889998887 2211 1112345778888877543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.78 E-value=0.45 Score=41.31 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=39.9
Q ss_pred cCCcceEEEEecc-ccCCCC------CccCCCCCcEEEeeeEeeChHH---HHHHHhcCCCccEEEEEecCC
Q 011021 167 SANSVTNLRLVWC-RLEQPF------DSIMLCSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWG 228 (495)
Q Consensus 167 ~~~~L~~L~L~~c-~l~~~~------~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~L~~c~~ 228 (495)
.-++|++|+|+++ .+.... ....-..|+.|+|++|.+++.+ +...+..-..|++|+|++|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3467888888875 554321 2234567888888888885443 334455667788888877764
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.68 E-value=1.5 Score=35.11 Aligned_cols=42 Identities=24% Similarity=0.081 Sum_probs=31.5
Q ss_pred ccCcccccCCcceEEEEeccccCCCC--CccCCCCCcEEEeeeEee
Q 011021 160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 203 (495)
Q Consensus 160 ~lp~~l~~~~~L~~L~L~~c~l~~~~--~~~~l~~L~~L~L~~~~~ 203 (495)
.+|..+ .++|++|+|++|.+...+ .+..+++|++|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 556443 256899999999887654 456788899999998887
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=67.20 E-value=4 Score=39.13 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=71.5
Q ss_pred CCcceEEEEecccc-CCCCCccCCCCCcEEEeeeEe--eChHHHHHHHhcCCCccEEEEEecC-CCcceeecCCCCccEE
Q 011021 168 ANSVTNLRLVWCRL-EQPFDSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCW-GLKHLCVSKASKLKIM 243 (495)
Q Consensus 168 ~~~L~~L~L~~c~l-~~~~~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c~-~l~~~~i~~l~~L~~L 243 (495)
+.++....+....- ........+.+|+.+.+...- +... .+.+|..|+++.+...- .++.....++.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCccccceeehhccc
Confidence 44555555443221 111134556677777764331 1221 24577888887775431 1122233356677777
Q ss_pred EeccccccceEEE----EeCCcceEEEEeecCCCCceeEEeecCCCccEEEeecc--ccChHHHHHHhhcCCCCcEEEec
Q 011021 244 EIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVT 317 (495)
Q Consensus 244 ~i~~c~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~L~ 317 (495)
.+... +..+. ..+++|+.+.+...+...-....+.+|.+|+++.|... .+.+. .+.+|.+|+.+.+-
T Consensus 269 ~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip 341 (379)
T 4h09_A 269 NFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYP 341 (379)
T ss_dssp EECCC---CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred ccccc---ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEEC
Confidence 76432 22222 14577777777522221101123457889999988532 12222 24568888887774
Q ss_pred C
Q 011021 318 R 318 (495)
Q Consensus 318 ~ 318 (495)
.
T Consensus 342 ~ 342 (379)
T 4h09_A 342 K 342 (379)
T ss_dssp T
T ss_pred C
Confidence 3
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=60.01 E-value=3.2 Score=39.82 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=59.6
Q ss_pred cccCCcceEEEEeccccCC-CCCccCCCCCcEEEeeeEe--eChHHHHHHHhcCCCccEEEEEecC--CCcceeecCCCC
Q 011021 165 IFSANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCW--GLKHLCVSKASK 239 (495)
Q Consensus 165 l~~~~~L~~L~L~~c~l~~-~~~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~L~~c~--~l~~~~i~~l~~ 239 (495)
...|..|+.+.+....-.. ...+.++.+|+.+.+...- +.. ..+.+|++|+++.+.++. .++.-...+|.+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccc----cccccccccccccccccccceehhhhhcCCCC
Confidence 3457889999887642111 1145678889998886432 122 235789999999997653 233334557888
Q ss_pred ccEEEeccccccceEEEE----eCCcceEEEEe
Q 011021 240 LKIMEIRSFSEEIEIVEI----SVPSLQQLTLL 268 (495)
Q Consensus 240 L~~L~i~~c~~~l~~~~~----~~p~L~~L~l~ 268 (495)
|+++.+.. .+..+.- .|.+|+++.+.
T Consensus 312 L~~i~lp~---~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPT---ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCT---TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCc---cccEEHHHHhhCCCCCCEEEEC
Confidence 99888853 2333321 45667766654
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.34 E-value=7.7 Score=30.80 Aligned_cols=54 Identities=13% Similarity=-0.053 Sum_probs=34.1
Q ss_pred EEEEeccccC--CCCCccCCCCCcEEEeeeEeeChHHHHHHHhcCCCccEEEEEecCC
Q 011021 173 NLRLVWCRLE--QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG 228 (495)
Q Consensus 173 ~L~L~~c~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~L~~c~~ 228 (495)
.++-++..++ ..+ ..--++|++|+|++|.++.- -...+...+.|+.|.|.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP-~~lp~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-TAFPVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSC-SCCCTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCC-CCCCcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence 4555555555 332 12234799999999988321 112356788899998888764
Done!