Query 011022
Match_columns 495
No_of_seqs 196 out of 1767
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 3.2E-72 7E-77 582.7 37.8 464 1-464 1-471 (473)
2 KOG1304 Amino acid transporter 100.0 3.4E-63 7.5E-68 494.7 30.1 393 34-444 42-449 (449)
3 PTZ00206 amino acid transporte 100.0 1.9E-56 4.1E-61 466.7 33.1 382 36-445 57-465 (467)
4 KOG1303 Amino acid transporter 100.0 5.1E-55 1.1E-59 443.9 30.3 388 34-446 33-436 (437)
5 PF01490 Aa_trans: Transmembra 100.0 6.3E-52 1.4E-56 429.2 -0.8 383 37-441 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 5.5E-46 1.2E-50 349.7 5.0 392 35-450 113-520 (524)
7 KOG1305 Amino acid transporter 100.0 5.8E-40 1.3E-44 332.3 24.0 378 36-447 3-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 1E-29 2.2E-34 261.0 30.5 347 34-394 4-381 (415)
9 PRK10483 tryptophan permease; 99.9 2.1E-22 4.6E-27 203.8 30.7 342 35-396 7-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.8E-22 8.2E-27 203.7 31.8 344 38-397 2-366 (394)
11 PRK09664 tryptophan permease T 99.9 1.4E-21 3E-26 197.6 31.5 343 34-396 4-374 (415)
12 TIGR00837 araaP aromatic amino 99.9 8.1E-22 1.8E-26 202.2 25.5 337 45-397 3-360 (381)
13 PRK15132 tyrosine transporter 99.9 1.1E-20 2.3E-25 192.3 30.1 339 40-396 4-362 (403)
14 PRK13629 threonine/serine tran 99.8 3.3E-16 7.1E-21 158.8 32.4 360 45-434 25-436 (443)
15 TIGR00814 stp serine transport 99.8 6.2E-16 1.4E-20 157.8 27.7 340 44-394 8-377 (397)
16 PRK10249 phenylalanine transpo 99.6 2.2E-11 4.7E-16 128.0 35.8 230 35-278 19-262 (458)
17 TIGR00912 2A0309 spore germina 99.5 5.9E-12 1.3E-16 128.2 27.6 334 37-397 1-355 (359)
18 PRK10655 potE putrescine trans 99.5 8.9E-11 1.9E-15 122.8 33.9 233 36-281 5-245 (438)
19 TIGR01773 GABAperm gamma-amino 99.5 2.6E-10 5.6E-15 119.8 35.2 231 34-278 9-254 (452)
20 PRK15049 L-asparagine permease 99.5 2E-10 4.3E-15 121.8 34.3 234 34-281 25-276 (499)
21 PRK11387 S-methylmethionine tr 99.4 4.7E-10 1E-14 118.4 35.2 234 34-280 11-261 (471)
22 TIGR00909 2A0306 amino acid tr 99.4 4.1E-10 8.8E-15 117.5 33.8 233 36-281 2-251 (429)
23 PRK10435 cadB lysine/cadaverin 99.4 4.3E-10 9.4E-15 117.4 33.4 236 35-284 3-246 (435)
24 TIGR00905 2A0302 transporter, 99.4 7E-10 1.5E-14 117.1 35.1 235 35-281 5-254 (473)
25 PRK10238 aromatic amino acid t 99.4 8.9E-10 1.9E-14 115.7 35.1 229 34-276 9-251 (456)
26 PRK10580 proY putative proline 99.4 2.3E-09 4.9E-14 112.8 37.3 230 34-277 6-251 (457)
27 PRK10644 arginine:agmatin anti 99.4 3.3E-10 7.2E-15 118.7 29.8 234 34-280 5-246 (445)
28 PRK10746 putative transport pr 99.4 2.4E-09 5.1E-14 112.6 35.9 231 35-279 8-254 (461)
29 PRK11049 D-alanine/D-serine/gl 99.4 3.8E-09 8.2E-14 111.4 36.7 232 34-279 17-265 (469)
30 TIGR03810 arg_ornith_anti argi 99.4 1.5E-09 3.3E-14 114.4 32.7 238 37-285 1-254 (468)
31 PRK11021 putative transporter; 99.4 1.7E-09 3.7E-14 112.1 31.8 225 40-279 2-231 (410)
32 PRK10836 lysine transporter; P 99.4 5.5E-09 1.2E-13 110.8 35.7 233 35-280 13-260 (489)
33 TIGR00913 2A0310 amino acid pe 99.3 5.2E-09 1.1E-13 110.7 35.2 230 37-278 2-250 (478)
34 TIGR00906 2A0303 cationic amin 99.3 2E-09 4.4E-14 115.4 31.3 234 34-280 25-286 (557)
35 TIGR00908 2A0305 ethanolamine 99.3 1.1E-08 2.4E-13 107.1 33.0 230 34-276 4-242 (442)
36 PF03845 Spore_permease: Spore 99.3 3.5E-09 7.5E-14 106.1 27.3 279 38-335 1-293 (320)
37 PRK10197 gamma-aminobutyrate t 99.3 2.2E-08 4.8E-13 104.9 34.2 217 49-279 4-235 (446)
38 COG1113 AnsP Gamma-aminobutyra 99.2 3E-09 6.4E-14 107.0 24.9 342 35-395 11-388 (462)
39 TIGR00911 2A0308 L-type amino 99.2 1.6E-08 3.5E-13 107.6 30.6 239 33-284 38-294 (501)
40 PF13520 AA_permease_2: Amino 99.2 1.2E-08 2.6E-13 106.3 27.8 232 40-286 2-247 (426)
41 TIGR00930 2a30 K-Cl cotranspor 99.2 2.3E-08 5E-13 112.6 30.5 230 36-278 75-333 (953)
42 PRK11357 frlA putative fructos 99.2 1.3E-07 2.8E-12 99.2 33.2 233 34-279 5-249 (445)
43 KOG1287 Amino acid transporter 99.1 6.2E-09 1.3E-13 106.3 20.5 350 33-398 8-388 (479)
44 COG0531 PotE Amino acid transp 99.1 4.9E-07 1.1E-11 95.2 33.8 241 33-286 8-262 (466)
45 COG0833 LysP Amino acid transp 99.0 4E-07 8.8E-12 93.7 29.0 226 35-274 42-283 (541)
46 TIGR03428 ureacarb_perm permea 99.0 3.6E-06 7.8E-11 89.1 37.2 238 35-285 11-273 (475)
47 PRK15238 inner membrane transp 98.9 7.2E-06 1.6E-10 87.2 35.2 229 36-278 6-264 (496)
48 TIGR00907 2A0304 amino acid pe 98.9 1E-05 2.2E-10 85.8 33.1 50 227-276 218-268 (482)
49 TIGR00910 2A0307_GadC glutamat 98.8 6.3E-06 1.4E-10 87.7 29.6 47 231-277 199-246 (507)
50 KOG3832 Predicted amino acid t 98.8 6.2E-08 1.3E-12 86.6 11.2 212 42-256 15-303 (319)
51 TIGR03813 put_Glu_GABA_T putat 98.8 1.6E-05 3.6E-10 84.0 31.9 52 234-285 202-254 (474)
52 KOG1286 Amino acid transporter 98.6 2.9E-06 6.3E-11 90.0 19.3 233 34-279 27-286 (554)
53 KOG1289 Amino acid transporter 98.6 2.1E-05 4.5E-10 81.2 23.2 62 226-287 252-314 (550)
54 PF00324 AA_permease: Amino ac 98.5 2.2E-06 4.7E-11 90.8 15.3 226 48-286 6-261 (478)
55 PRK11375 allantoin permease; P 98.5 8.6E-05 1.9E-09 78.4 26.4 319 41-384 36-391 (484)
56 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.00022 4.9E-09 74.7 28.4 175 114-288 77-274 (442)
57 COG1457 CodB Purine-cytosine p 98.3 0.00094 2E-08 68.6 29.1 257 116-382 84-348 (442)
58 COG3949 Uncharacterized membra 98.2 0.0012 2.6E-08 64.3 25.3 133 42-191 6-143 (349)
59 COG0591 PutP Na+/proline sympo 98.1 0.019 4E-07 61.0 33.9 147 40-197 41-189 (493)
60 TIGR00813 sss transporter, SSS 98.1 0.0098 2.1E-07 61.6 30.7 147 37-198 3-151 (407)
61 PF00474 SSF: Sodium:solute sy 97.9 0.0082 1.8E-07 62.2 27.0 148 36-198 5-155 (406)
62 PRK12488 acetate permease; Pro 97.9 0.052 1.1E-06 58.5 35.0 147 36-198 66-215 (549)
63 TIGR02358 thia_cytX probable h 97.9 0.011 2.3E-07 60.8 26.6 171 113-286 58-233 (386)
64 TIGR02119 panF sodium/pantothe 97.9 0.054 1.2E-06 57.3 35.7 152 36-198 39-192 (471)
65 PRK15419 proline:sodium sympor 97.8 0.082 1.8E-06 56.4 35.2 152 36-198 39-195 (502)
66 PRK09442 panF sodium/panthothe 97.8 0.081 1.7E-06 56.2 35.8 152 36-198 40-193 (483)
67 PRK11017 codB cytosine permeas 97.7 0.019 4.1E-07 59.5 25.6 172 113-286 71-244 (404)
68 TIGR02711 symport_actP cation/ 97.7 0.13 2.7E-06 55.6 32.8 146 36-197 66-214 (549)
69 TIGR00835 agcS amino acid carr 97.6 0.069 1.5E-06 55.1 27.6 145 38-196 46-198 (425)
70 TIGR02121 Na_Pro_sym sodium/pr 97.6 0.13 2.9E-06 54.5 35.8 152 36-198 35-191 (487)
71 PRK09395 actP acetate permease 97.4 0.31 6.7E-06 52.6 34.3 146 36-197 68-216 (551)
72 COG1953 FUI1 Cytosine/uracil/t 97.3 0.26 5.6E-06 51.2 26.5 279 113-397 103-416 (497)
73 TIGR03648 Na_symport_lg probab 97.2 0.49 1.1E-05 51.1 34.4 146 36-196 31-178 (552)
74 PF02133 Transp_cyt_pur: Perme 96.9 0.028 6.2E-07 58.8 16.2 168 114-282 72-258 (440)
75 TIGR00796 livcs branched-chain 96.7 0.89 1.9E-05 46.4 28.2 69 47-133 3-74 (378)
76 PF02554 CstA: Carbon starvati 96.5 0.26 5.6E-06 49.3 18.0 191 39-258 52-242 (376)
77 PRK10484 putative transporter; 96.2 2.2 4.8E-05 45.7 33.8 85 36-134 37-122 (523)
78 PF01566 Nramp: Natural resist 95.6 3.1 6.7E-05 42.3 25.3 78 114-192 43-122 (358)
79 PRK15015 carbon starvation pro 95.0 0.98 2.1E-05 48.5 16.0 101 40-152 84-184 (701)
80 PF05525 Branch_AA_trans: Bran 94.9 5.4 0.00012 41.4 23.2 46 40-85 4-52 (427)
81 PF01235 Na_Ala_symp: Sodium:a 94.9 5.5 0.00012 41.1 23.5 148 36-191 16-166 (416)
82 COG1966 CstA Carbon starvation 94.1 1.7 3.7E-05 45.7 15.0 102 38-151 51-152 (575)
83 COG4147 DhlC Predicted symport 92.5 15 0.00033 38.2 28.0 166 113-283 104-294 (529)
84 COG1115 AlsT Na+/alanine sympo 92.0 2.8 6.1E-05 43.1 12.7 153 34-195 58-214 (452)
85 PRK00701 manganese transport p 91.0 23 0.00049 37.1 31.1 22 113-134 94-115 (439)
86 TIGR00796 livcs branched-chain 88.9 4.7 0.0001 41.2 11.4 68 113-180 255-322 (378)
87 COG0733 Na+-dependent transpor 87.6 38 0.00082 35.1 26.5 208 39-261 9-250 (439)
88 KOG1288 Amino acid transporter 82.8 56 0.0012 35.8 15.6 34 246-279 314-348 (945)
89 TIGR01197 nramp NRAMP (natural 82.7 62 0.0013 33.3 29.5 78 113-191 64-143 (390)
90 KOG2466 Uridine permease/thiam 77.1 83 0.0018 33.1 14.3 133 166-299 189-332 (572)
91 KOG2083 Na+/K+ symporter [Inor 73.3 10 0.00022 40.5 6.9 43 43-88 39-81 (643)
92 PHA02764 hypothetical protein; 73.2 1E+02 0.0022 30.6 15.8 86 38-137 13-101 (399)
93 COG1914 MntH Mn2+ and Fe2+ tra 73.1 1.2E+02 0.0026 31.4 32.0 67 329-396 312-378 (416)
94 PF05525 Branch_AA_trans: Bran 72.8 17 0.00036 37.8 8.4 68 113-180 261-328 (427)
95 COG1114 BrnQ Branched-chain am 66.5 1E+02 0.0022 31.8 12.1 138 31-180 184-330 (431)
96 PRK15433 branched-chain amino 64.0 1.9E+02 0.0042 30.2 22.6 43 40-82 9-54 (439)
97 PF00209 SNF: Sodium:neurotran 54.5 3E+02 0.0065 29.5 32.5 35 227-261 250-285 (523)
98 KOG2082 K+/Cl- cotransporter K 54.2 81 0.0018 35.0 9.4 51 40-90 116-167 (1075)
99 KOG1277 Endosomal membrane pro 52.1 3E+02 0.0066 28.8 14.6 38 47-91 293-330 (593)
100 PF05915 DUF872: Eukaryotic pr 45.8 62 0.0013 27.0 5.7 24 40-63 40-63 (115)
101 PRK15433 branched-chain amino 45.3 1.2E+02 0.0025 31.8 8.8 66 114-180 266-331 (439)
102 TIGR00267 conserved hypothetic 41.8 54 0.0012 29.4 5.2 26 41-66 89-114 (169)
103 COG4145 PanF Na+/panthothenate 35.7 5E+02 0.011 26.6 30.4 142 38-191 40-184 (473)
104 COG5264 VTC1 Vacuolar transpor 34.4 2.8E+02 0.0061 23.3 8.3 50 49-101 44-93 (126)
105 PF05805 L6_membrane: L6 membr 33.8 2E+02 0.0043 26.4 7.4 87 368-461 45-135 (195)
106 PF03977 OAD_beta: Na+-transpo 32.7 95 0.0021 31.0 5.5 74 226-300 145-236 (360)
107 KOG4812 Golgi-associated prote 32.0 54 0.0012 30.9 3.5 85 350-449 160-255 (262)
108 COG5249 RER1 Golgi protein inv 29.6 2.9E+02 0.0063 23.9 7.1 21 73-93 141-161 (180)
109 COG0534 NorM Na+-driven multid 29.3 6.8E+02 0.015 26.2 11.8 35 253-288 311-345 (455)
110 PHA02680 ORF090 IMV phosphoryl 27.2 1.7E+02 0.0038 22.9 4.9 54 233-288 18-72 (91)
111 PF02028 BCCT: BCCT family tra 27.2 7.8E+02 0.017 26.2 26.6 22 39-60 75-96 (485)
112 TIGR01109 Na_pump_decarbB sodi 26.9 1E+02 0.0022 30.6 4.6 74 226-300 145-236 (354)
113 PRK15475 oxaloacetate decarbox 24.9 1.1E+02 0.0025 30.8 4.5 74 226-300 216-307 (433)
114 COG1114 BrnQ Branched-chain am 24.0 8.3E+02 0.018 25.4 24.2 74 40-132 6-83 (431)
115 PRK15476 oxaloacetate decarbox 23.3 1.3E+02 0.0027 30.5 4.5 74 226-300 216-307 (433)
116 PRK15477 oxaloacetate decarbox 23.3 1.3E+02 0.0028 30.5 4.5 74 226-300 216-307 (433)
117 PRK10440 iron-enterobactin tra 23.1 7.7E+02 0.017 24.7 14.1 36 350-395 286-326 (330)
118 TIGR03750 conj_TIGR03750 conju 23.0 4.4E+02 0.0095 21.8 7.8 55 36-90 15-70 (111)
119 PF02468 PsbN: Photosystem II 21.9 73 0.0016 21.5 1.8 25 264-288 7-31 (43)
120 PRK13183 psbN photosystem II r 21.5 69 0.0015 21.8 1.6 28 261-288 7-34 (46)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.2e-72 Score=582.70 Aligned_cols=464 Identities=85% Similarity=1.450 Sum_probs=415.7
Q ss_pred Ccccchhhhhhhccccccccc-------CCCcccccccccccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHH
Q 011022 1 MAADKVVETVVVGNYVEMETE-------GKPQNMKSKLSNFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGI 73 (495)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~ 73 (495)
|..++|.|+...++++|.+.+ +.....+.+.+|..+++++.+++.+|++++.+|+|+|+||+||+++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gi 80 (473)
T PLN03074 1 MMAGKQAETAIVGNYVEMEVEGGGEKEEGGGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGI 80 (473)
T ss_pred CCCccccchhHhhccchhccccccccccCCCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHH
Confidence 456788888888888888754 2225566777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhh
Q 011022 74 LFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASN 153 (495)
Q Consensus 74 i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~ 153 (495)
+.++++++++.||+++|.+++.++++|+++++.+|++++.+|.|+++..+||+++.+..+++++++++.++.|++.++++
T Consensus 81 i~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~ 160 (473)
T PLN03074 81 LFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASN 160 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 99999999999999999999999998887777888887789999999999999999999999999999999999999999
Q ss_pred cccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhh
Q 011022 154 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGAT 233 (495)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 233 (495)
++.+++..+++.|+++++++++|++++|++++++++|++|+.++++.++++++.++.++..+++++..+.++..++.+++
T Consensus 161 ~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~ 240 (473)
T PLN03074 161 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGAT 240 (473)
T ss_pred hhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHH
Confidence 88888888999999999999999999999999999999999987776666766666666655565544556778888889
Q ss_pred HHHHhhcccchhHHHHhhccCCcchhHHHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHH
Q 011022 234 NILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLI 313 (495)
Q Consensus 234 ~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i 313 (495)
+++|||+||.++|+++++||+|++|++++.+++.+++.+|+.+|+.||+.|||++.++++++.|+|++.+.+++++++++
T Consensus 241 ~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i 320 (473)
T PLN03074 241 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLI 320 (473)
T ss_pred HHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986556788889877788999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHhcCCCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHH
Q 011022 314 HQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFT 393 (495)
Q Consensus 314 ~~~~sypl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~ 393 (495)
+++.+|++++.|+.+.+|+..+.+++++...|.++|+.+++.++++|+.+|+|+++++++||++++.+++++|+++|+++
T Consensus 321 ~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~ 400 (473)
T PLN03074 321 HQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 400 (473)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865555567789999999999999999999999999999999999999999999999999
Q ss_pred hchhhhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHhccccccccccccCCCCC
Q 011022 394 FKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQIDTFGLFTKCYQCLPPQ 464 (495)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~iiv~~G~~~~v~Gty~si~~ii~~~~~~~~~~~~~~c~~~~ 464 (495)
++++.+|++..|||++...+|.++.++|+++++++|+++++.|+|+|+++|++++++++.|++||+|.++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~~~ 471 (473)
T PLN03074 401 YRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPPS 471 (473)
T ss_pred hcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCCCC
Confidence 98888888888999865555655678999999866888889999999999999999999999999998873
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-63 Score=494.71 Aligned_cols=393 Identities=20% Similarity=0.218 Sum_probs=336.2
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.-++.+|..+|..|++|.++|+|+|+||+||+++||+.|.+..++++.+++||++.|++|.+++++|..++..+|.+..+
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34667999999999999999999999999999999999999999999999999999999999999987655554432211
Q ss_pred -----cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccc-----cccccchhhHHHHHHHHhhhccCCCC
Q 011022 114 -----QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSF 183 (495)
Q Consensus 114 -----~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~-----~~~~~~~~~~~i~~~i~~pl~~l~~l 183 (495)
+|. ..+.+||++|.+++++.+++++|.|++|+++.++|++.+ ....+.+.|+++..++.++++++|++
T Consensus 122 ~a~~~~~~--~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 122 SAMEGGPG--WLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HHHcCCcH--HHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 222 145679999999999999999999999999999998744 34567888999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchh---H
Q 011022 184 HNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---A 260 (495)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~---~ 260 (495)
|.|+.+|.+|.+..+... .++.+...++.++..+.....++.++...+|+.+|||+|++++.|++++||+|++|+ +
T Consensus 200 k~Lsp~Sl~Anv~~~~g~-~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGL-AIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 999999999999876544 444444444433222222333456666667999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcC--CC
Q 011022 261 IYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGM--HE 338 (495)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~--~~ 338 (495)
++..+|.+++++|..+|++||++||+++ ++.|+.|+|++++.+.+++++++++.++||++++|..+++++.+++ ++
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v--~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~ 356 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDV--KGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE 356 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccc--cceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence 9999999999999999999999999999 5699999999888899999999999999999999999999986642 34
Q ss_pred cccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCccccchhhh
Q 011022 339 CKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTY 418 (495)
Q Consensus 339 ~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~ 418 (495)
+++++..+.+|..++++++++|.++|+++.+++++||++++.+++++|++++++.++++.++ ...| +.
T Consensus 357 ~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~----------~~~~--~~ 424 (449)
T KOG1304|consen 357 NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKG----------RFMW--KL 424 (449)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccC----------ceeh--HH
Confidence 44577889999999999999999999999999999999999999999999999999987531 1344 57
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHH
Q 011022 419 TINVFVVVWVLVVGFGFGGWASMTNF 444 (495)
Q Consensus 419 ~~~~~iiv~~G~~~~v~Gty~si~~i 444 (495)
++|++++++ |+++++.|||+|++++
T Consensus 425 ~~ni~l~~~-G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 425 IKNIVLIVF-GVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHH-HHHHHHHHHhhhhhcC
Confidence 899988886 9999999999999874
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.9e-56 Score=466.73 Aligned_cols=382 Identities=15% Similarity=0.170 Sum_probs=311.0
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
-++++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||+++|.+++++. +..+|
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-------------~~~sY 123 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-------------NIRTY 123 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CCCCH
Confidence 34566899999999999999999999999999999999999999999999999998885431 23599
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccccc----------ccch-hhHHHHHHHHhhhccCCCCc
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDN----------LDKR-TWTYIFGACCATTVFIPSFH 184 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~----------~~~~-~~~~i~~~i~~pl~~l~~l~ 184 (495)
+|++++++||++++++++++.++++|.|++|++..+|+++.+... ..++ .+.+++..+++|++++|+++
T Consensus 124 ~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~ 203 (467)
T PTZ00206 124 EGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHID 203 (467)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchH
Confidence 999999999999999999999999999999999999877533211 1122 24455677899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc---C--------CCchHHHHHhhhhHHHHhhcccchhHHHHhhcc
Q 011022 185 NYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKH---A--------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW 253 (495)
Q Consensus 185 ~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~--------~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~ 253 (495)
+|+++|.+++.++++..+.+++.+..++.+++.+. . ......+++.++|+++|||.||.+++++++|||
T Consensus 204 ~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~ 283 (467)
T PTZ00206 204 SLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMT 283 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhc
Confidence 99999999998877655555555555443322211 0 011123578899999999999999999999999
Q ss_pred CC--cchhHHHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccC-CC-chHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 011022 254 KP--QKFKAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLL-PR-SPFRDMAVILMLIHQFITFGFACTPLYFV 329 (495)
Q Consensus 254 ~p--~~~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l-~~-~~~~~i~~~~~~i~~~~sypl~~~p~~~~ 329 (495)
+| +|+.+++..++.+++++|..+|++||+.||+++ +++++.|+ |. +....++++++++.++++||++++|+|+.
T Consensus 284 ~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v--~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~ 361 (467)
T PTZ00206 284 NRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNV--TGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNA 361 (467)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 84 677889999999999999999999999999999 67999999 44 34667888889999999999999999999
Q ss_pred HHHHhcC-CCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCC
Q 011022 330 WEKAIGM-HECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPP 408 (495)
Q Consensus 330 ~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~ 408 (495)
+++.+.. +++.+.+++...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++....+.++
T Consensus 362 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~-------- 433 (467)
T PTZ00206 362 LYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQK-------- 433 (467)
T ss_pred HHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHh--------
Confidence 8887642 2333455666667777788899999999999999999999999999999999999853221111
Q ss_pred CccccchhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011022 409 KFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFI 445 (495)
Q Consensus 409 ~~~~~w~~~~~~~~~iiv~~G~~~~v~Gty~si~~ii 445 (495)
.+|. .++.+++++++ |+++++.|||+||++.+
T Consensus 434 ---~~~~-~~~~~~~lli~-Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 434 ---VGPF-YYISTYVVLIT-GVIAIVFGTGATIWGVT 465 (467)
T ss_pred ---hchH-HHHHHHHHHHH-HhheEEecchhHhhHHh
Confidence 1222 24789999986 99999999999999876
No 4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-55 Score=443.88 Aligned_cols=388 Identities=28% Similarity=0.418 Sum_probs=329.7
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
..++++|++++.+|.++.++|.|+|+||||++|+||+.|++++++.++++.||..+|.+|+++++++.++ +-.
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-------r~~ 105 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-------RRY 105 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-------cCC
Confidence 3456689999999999999999999999999999999999999999999999999999998877665542 125
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccc------cc-cccchhhHHHHHHHHhhhccCCCCcch
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYI------ND-NLDKRTWTYIFGACCATTVFIPSFHNY 186 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~------~~-~~~~~~~~~i~~~i~~pl~~l~~l~~l 186 (495)
+|.|+++++||+++++++..++.+.+++.++.|.+..++++..+ +. ..+.+.|+++++++.+|++++|+++.+
T Consensus 106 ~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 106 RYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred ChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchh
Confidence 89999999999999999999999999999999999999998643 12 344678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchhHHHH
Q 011022 187 RIWSFLGLLMTTYTAWYLTIASLLHGQVEG---VKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYL 263 (495)
Q Consensus 187 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 263 (495)
+++|.++.+.++..+.+.+..++.+|.... .+..........|+|+|+++|+|++|.++|+||++||+|++|+|++.
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~l 265 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALL 265 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHH
Confidence 999999999988777777777777664321 12211111111189999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcccccccccccccCC-CchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCc---
Q 011022 264 LATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLP-RSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHEC--- 339 (495)
Q Consensus 264 ~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~-~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~~~--- 339 (495)
.++.+++.+|+.+++.||++|||+++ ++++.|++ +.++...+++++.++++.+|.++..|+.+.+|+..+.+.+
T Consensus 266 is~~~~~~~y~~vai~GY~aFG~~~~--~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~ 343 (437)
T KOG1303|consen 266 ISYIIVTFLYFPVAIIGYWAFGDSVP--DNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFK 343 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccc--hhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccc
Confidence 99999999999999999999999994 69999996 4456778889999999999999999999999999874433
Q ss_pred -ccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCccccchhhh
Q 011022 340 -KSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTY 418 (495)
Q Consensus 340 -~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~ 418 (495)
+....|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|+++|++.+| |+|++.+|.
T Consensus 344 ~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k-----------~~~~s~~~~--- 409 (437)
T KOG1303|consen 344 KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKK-----------PKRFSPKWL--- 409 (437)
T ss_pred ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhhHHHH---
Confidence 35668999999999999999999999999999999999999999999999999843 344555663
Q ss_pred hhHHHH-HHHHHHHHhhhhHHHHHHHHHH
Q 011022 419 TINVFV-VVWVLVVGFGFGGWASMTNFIH 446 (495)
Q Consensus 419 ~~~~~i-iv~~G~~~~v~Gty~si~~ii~ 446 (495)
.++.+ +++ |+++.+....+++++++.
T Consensus 410 -~~~~~~~~~-~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 410 -LNWVIILVV-GLLLSVLAAVGGVRSLII 436 (437)
T ss_pred -HHHHhhhhh-hhhHHHHHHHHHHHHHhh
Confidence 45555 443 666677777777777664
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=6.3e-52 Score=429.15 Aligned_cols=383 Identities=25% Similarity=0.353 Sum_probs=319.5
Q ss_pred cCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011022 37 HGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (495)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (495)
||+|++++++|++|+++|+|+|+||++|+++||++|++++++++.++.||+++|.+++.+..++ ++..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~---------~~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNG---------TGRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccc---------ccccccc
Confidence 6889999999999999999999999999999999999999999999999999999997654311 2336999
Q ss_pred HHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc------cccchhhHHHHHHHHhhhccCCCCcchhHHH
Q 011022 117 EVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND------NLDKRTWTYIFGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 117 dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~------~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s 190 (495)
|++++.+||++++++++++.++++|.++.|++..+|.+..+.+ ..++..+.++..++++|++++|++++++++|
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHh
Confidence 9999999999999999999999999999999999988865433 2455667788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--cCCCCCCcc---CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchh---HHH
Q 011022 191 FLGLLMTTYTAWYLTIASLL--HGQVEGVKH---AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---AIY 262 (495)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~---~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~ 262 (495)
.++.++.++.....++.... .+...+.+. ....++.+++.++|+++|||.||.++|++++|||+|++++ ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 231 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVL 231 (409)
T ss_pred hhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceee
Confidence 99998876421111111111 111112221 2345667899999999999999999999999999999987 889
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCch-HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcC-----
Q 011022 263 LLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSP-FRDMAVILMLIHQFITFGFACTPLYFVWEKAIGM----- 336 (495)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~-~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~----- 336 (495)
..++.+++++|..+|++||++||+++ +++++.|+++++ +..++++++.++++.+||++..|.++.+++.+..
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSV--QGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeee--cchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999999999999999999999 569999999876 7789999999999999999999999999987752
Q ss_pred -----CCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCcc
Q 011022 337 -----HECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFV 411 (495)
Q Consensus 337 -----~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~ 411 (495)
+++.++++|...|+.++++++++|+.+|+++++++++||++++.++|++|+++|++.++++..+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~---------- 379 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSF---------- 379 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccc----------
Confidence 22334577899999999999999999999999999999999999999999999999988763211
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhhhHHHHH
Q 011022 412 GRWVGTYTINVFVVVWVLVVGFGFGGWASM 441 (495)
Q Consensus 412 ~~w~~~~~~~~~iiv~~G~~~~v~Gty~si 441 (495)
..|......++.++++ |+++++.|+|.+|
T Consensus 380 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i 408 (409)
T PF01490_consen 380 GWWWILSILNWIIIVF-GVVLMVFGTYQSI 408 (409)
T ss_pred ceeehhhccceEEEEE-eeehhHHhHHHHc
Confidence 1111112456666665 8998999999886
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-46 Score=349.67 Aligned_cols=392 Identities=14% Similarity=0.154 Sum_probs=330.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
-+.+++.+||..|..|++-|.=+++||+|....||+ ++..++.++.+|+||+.+|++|..|-.+.- +-.+.+ ++
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dG--evVrvR---ds 186 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDG--EVVRVR---DS 186 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCC--cEEEee---hh
Confidence 346788999999999999999999999999999999 899999999999999999999977643211 011222 48
Q ss_pred HHHHHHHhhchhhh-hhhHhhhHHHHhHHHHHHHHHhhhhcccccc--cccchhhHHHHHHHHhhhccCCCCcchhHHHH
Q 011022 115 WFEVLDGLLGKHWR-NVGLAFNCTFLLFGSVIQLIACASNIYYIND--NLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 115 y~dl~~~~~G~~~~-~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~ 191 (495)
|.+++...+++..+ ..+.+.+.+.++..|+.|++.++|.++.-.+ ..+++-|+++..+.++|+.++|+++-.+.+|+
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf 266 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSF 266 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHH
Confidence 99999998877544 7888899999999999999999998875444 56889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccC-CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchhHHHHHHHHHHH
Q 011022 192 LGLLMTTYTAWYLTIASLLHGQVEGVKHA-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVM 270 (495)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~ 270 (495)
...++-++.-++++.+++..-.+..++-. -..+...+..++|+++|+|..|..+|+++.+|++|++|...+.|+-+...
T Consensus 267 ~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAa 346 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAA 346 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHH
Confidence 88888776666666777654443443321 12345667778899999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc-CCCc---------c
Q 011022 271 TLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIG-MHEC---------K 340 (495)
Q Consensus 271 ~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~-~~~~---------~ 340 (495)
++-..+|.++|++||+.+ |..|++|+|+..+..++++++++..+.|||+-+..+.+.+|+-+. ...+ .
T Consensus 347 VfK~~Fg~~~fLTf~~~T--qevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~D 424 (524)
T KOG4303|consen 347 VFKVVFGMLGFLTFGELT--QEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPD 424 (524)
T ss_pred HHHHHHHHheeeeechhh--HHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCC
Confidence 999999999999999999 679999999988999999999999999999999999999996552 1111 1
Q ss_pred cchhh--hhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCccccchhhh
Q 011022 341 SLCKR--AAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTY 418 (495)
Q Consensus 341 ~~~~~--~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~ 418 (495)
...+. ..+|.++++++.++|+.+|+|..+++++|+++++.++|+.|++||+++..++.. | ...
T Consensus 425 g~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~--------------~-~e~ 489 (524)
T KOG4303|consen 425 GSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLN--------------N-FEK 489 (524)
T ss_pred cchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhh--------------h-HHH
Confidence 12333 457999999999999999999999999999999999999999999999876532 2 134
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhccc
Q 011022 419 TINVFVVVWVLVVGFGFGGWASMTNFIHQIDT 450 (495)
Q Consensus 419 ~~~~~iiv~~G~~~~v~Gty~si~~ii~~~~~ 450 (495)
.++..|+++ |...+|.|.|.|..++|+.+++
T Consensus 490 ~fD~~Ii~~-G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 490 RFDQGIIIM-GCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred hhheeEEEE-eeeEEEEeEehhhHHHHHHHhc
Confidence 578888886 8888999999999999999987
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-40 Score=332.27 Aligned_cols=378 Identities=17% Similarity=0.165 Sum_probs=299.0
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
+++.|...+++|+.|+++|+|+|++|+||++.|++.|+++++++++++.++.+++.+|..+.. + ++|
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~-----------~--~ty 69 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG-----------E--RTY 69 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC-----------C--CCH
Confidence 346688999999999999999999999999999999999999999999999999999975542 2 399
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccc------cc-----ccchh-hHHHHHHHHhhhccCCCC
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIN------DN-----LDKRT-WTYIFGACCATTVFIPSF 183 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~------~~-----~~~~~-~~~i~~~i~~pl~~l~~l 183 (495)
+++++..+|+.++....+....+.+| ++.|++..+|.+..+. +. .+++. |.+....+.+|+++.|++
T Consensus 70 ~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l 148 (411)
T KOG1305|consen 70 SSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNL 148 (411)
T ss_pred HHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhh
Confidence 99999999999977666666666666 5777777776654211 11 12222 566778889999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccC--CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc--h
Q 011022 184 HNYRIWSFLGLLMTTYTAWYLTIASLLHGQ-VEGVKHA--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--F 258 (495)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~--~ 258 (495)
.++++.|.++..+.++..+.+++....... .+..... ....+.+.+.++++++|||.||.++.++++|||+|++ .
T Consensus 149 ~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i 228 (411)
T KOG1305|consen 149 DSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI 228 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH
Confidence 999999999999988766666555554332 1111111 1222367889999999999999999999999999965 6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchH-------HHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 011022 259 KAIYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPF-------RDMAVILMLIHQFITFGFACTPLYFVWE 331 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~-------~~i~~~~~~i~~~~sypl~~~p~~~~~~ 331 (495)
+++...+...+..+|..+|.+||+.|||.+ .+|++.+++++.- ...++..++++++.++|+..+|+|..++
T Consensus 229 ~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v--~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~ 306 (411)
T KOG1305|consen 229 QRVSNIAIILATLIYLLTGLFGYLTFGDLV--KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLD 306 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecccc--hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 788999999999999999999999999999 5799999987542 3678899999999999999999999888
Q ss_pred HHhcCCC----cccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCC
Q 011022 332 KAIGMHE----CKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQP 407 (495)
Q Consensus 332 ~~~~~~~----~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~ 407 (495)
+.+..+. +.+..+++++...++..+.+.|+.+|+++.+++++||+++..++|++|+++|++..|+ ..++
T Consensus 307 ~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~-~~~~------ 379 (411)
T KOG1305|consen 307 ELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK-KSRE------ 379 (411)
T ss_pred HHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc-cccc------
Confidence 6654222 1344567888889999999999999999999999999999999999999999999876 2211
Q ss_pred CCccccchhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 011022 408 PKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQ 447 (495)
Q Consensus 408 ~~~~~~w~~~~~~~~~iiv~~G~~~~v~Gty~si~~ii~~ 447 (495)
. ...+...++ |+.....|+...+.++..+
T Consensus 380 ----~------~~~~~~~~~-~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 380 ----P------LGALIFLIL-GVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred ----c------hHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 1 123333333 5555666777777766543
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-29 Score=260.97 Aligned_cols=347 Identities=14% Similarity=0.122 Sum_probs=254.0
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
..+++.+..++++++.++++|+|+|+||++++..|++++++++++.+.++++|.+++.++..+..+. ..
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-----------~~ 72 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-----------KA 72 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------cc
Confidence 3455667899999999999999999999999999999999999999999999999999997665221 13
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc-----c-ccchhhHHHHHHHHhhhccCCCCcchh
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND-----N-LDKRTWTYIFGACCATTVFIPSFHNYR 187 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~-----~-~~~~~~~~i~~~i~~pl~~l~~l~~l~ 187 (495)
++.|++++.+||+++++..+...+.+++.+++|.+..++.+....+ . .+++.+.+++..++.++++.++...++
T Consensus 73 ~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 73 SITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 8999999999999999999999999999999999998887753322 1 567778888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc--hhHHH
Q 011022 188 IWSFLGLLMTTYTAWYLTIASLLHGQVEG---VKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKAIY 262 (495)
Q Consensus 188 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~--~~~~~ 262 (495)
..+.+....+++.++......... +... .+...+..+..+..++|+++|||+||+++|+++++||++++ .+|+.
T Consensus 153 ~ts~l~~~~v~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 153 ITSLLVFGKVIYLVLLVVYLIPHW-NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999988887665443332222211 1111 11111356788899999999999999999999999998755 89999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHHHHHHHHHhhhcc--------------HHH
Q 011022 263 LLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTP--------------LYF 328 (495)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i~~~~sypl~~~p--------------~~~ 328 (495)
..+..+..++|+.+++++|..+|+.+ .++++++.+++............+...+++...++ .++
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~--~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~ 309 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLV--FGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFE 309 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccc--HHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999999999999998 46999999875433222222222333334333333 344
Q ss_pred HHHHHhcCCC----cccchhhhhh--hhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHh
Q 011022 329 VWEKAIGMHE----CKSLCKRAAA--RLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTF 394 (495)
Q Consensus 329 ~~~~~~~~~~----~~~~~~~~~~--r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~ 394 (495)
..++.++..+ ++..+.+... ....++.....+...|..+.+++.+|+.....+.++.|...+.+..
T Consensus 310 ~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~ 381 (415)
T COG0814 310 GLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP 381 (415)
T ss_pred hhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444443211 1112222222 2333444556667777777777777777777777777766654443
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.92 E-value=2.1e-22 Score=203.77 Aligned_cols=342 Identities=18% Similarity=0.131 Sum_probs=246.0
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
.+++++.+++.+.+..+.||+|+|+||.+.+++|+.++++++++++.++.||+.++.+...+++ + -.+
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----------~-g~~ 74 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----------I-GSS 74 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------C-CCC
Confidence 3456779999999999999999999999999999999999999999999999999988865441 1 148
Q ss_pred HHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc----cccchhhHHHHHHHHhhhccCCCCcchhHHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND----NLDKRTWTYIFGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~----~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s 190 (495)
+..++|+.+||.|+.+..+...+..++.+++|+.-.++.+....+ +.+++...+++.++...+.+.. .|...+++
T Consensus 75 ~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~g-t~~vd~~n 153 (414)
T PRK10483 75 FDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLS-TKAVSRMT 153 (414)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-hhHHHHHH
Confidence 999999999999999888888888888889998777776643321 3355555666766666666653 35555555
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCC---CCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccC-CcchhHHHHHH
Q 011022 191 FLGLLMTTYTAWYLTIASLL-HGQVE---GVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKAIYLLA 265 (495)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~-~~~~~---~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~s 265 (495)
-+-+...+... .+.+..+. +-+.+ +.....+..+...+.+++++++||+.|+++|++.+.+++ ++|.+|++..+
T Consensus 154 ~~l~~~~i~~f-~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 154 AIVLGAKVITF-FLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 43333222111 12222221 11111 111122233556778899999999999999999999876 57889999999
Q ss_pred HHHHHHHHHhH--HHHHH---------HHhcccccccccccccC----CCchHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 011022 266 TLYVMTLTLPS--AAAVY---------WAFGDMLLNHSNAFSLL----PRSPFRDMAVILMLIHQFITFGFACTPLYFVW 330 (495)
Q Consensus 266 ~~~~~~~y~~~--g~~gY---------~~fG~~~~~~~~il~~l----~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~ 330 (495)
..+..++|++. .+.|- ..-|++. +..+..+ +++.......++..+++.+||--.....+|.+
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni---~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l 309 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI---DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYL 309 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh---HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988763 22221 1122222 1111222 22334466778888899999988788999999
Q ss_pred HHHhcCCCcccchhhhhhhhhHHHHHHHHHHhcCc-chhhHHhhhhhhhhhhHHhhhHHHHHHHhch
Q 011022 331 EKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPF-FGPINSTVGSLLVSFTVYIIPALAHIFTFKS 396 (495)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~-~~~iislvGa~~~~~l~~ilP~l~~l~~~~~ 396 (495)
.+.++.+++ ...|........++++++|.+.|+ |-..++..|.. ++.+..++|+++.++.||+
T Consensus 310 ~D~~k~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 310 ADLFGFDDS--AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHhCCCCc--cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 998874432 345666677888999999999998 88899999976 6778889999999998864
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.92 E-value=3.8e-22 Score=203.69 Aligned_cols=344 Identities=15% Similarity=0.147 Sum_probs=241.2
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011022 38 GGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (495)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~d 117 (495)
+.+.+++.+.+..+.+|+|+|+||.+.+.+|.+++++++++++.+++++..++.|...+.++ ..++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~------------~~~~~~ 69 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE------------GSSLTS 69 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CCCHHH
Confidence 45689999999999999999999999999999999999999999999999999888655421 258999
Q ss_pred HHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccc-----ccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 118 VLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~-----~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
++++.+||+++++..+...+..+...++|..-.++.++.+. ...+++.-.+++..+...+.+. ..+...+.+-.
T Consensus 70 ~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~ 148 (394)
T PF03222_consen 70 MAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRV 148 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 99999999999999988888888888899887776654332 1223344344444443333333 22333444332
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcc--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccC-CcchhHHHHHHHHHH
Q 011022 193 GLLMTTYTAWYLTIASLLHGQVEGVKH--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKAIYLLATLYV 269 (495)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~s~~~~ 269 (495)
-+...+.....++.....+-+.+.... ....++...+.+++++++||..|.++|++.+.+++ ++|.+|++.++..+.
T Consensus 149 lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~ 228 (394)
T PF03222_consen 149 LVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIP 228 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 222222111111111111111111111 23457788889999999999999999999999984 577889999999888
Q ss_pred HHHHHhH--HHHH---------HHHhcccccccccccccCCCch-HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC
Q 011022 270 MTLTLPS--AAAV---------YWAFGDMLLNHSNAFSLLPRSP-FRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMH 337 (495)
Q Consensus 270 ~~~y~~~--g~~g---------Y~~fG~~~~~~~~il~~l~~~~-~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~ 337 (495)
.++|++. .+.| -..-|++..+-...+.+..+++ ......++..+++.+||--....++|.+.+.++.+
T Consensus 229 lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~ 308 (394)
T PF03222_consen 229 LVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK 308 (394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888754 2333 1111211110011222322333 55667888899999999887788999999888652
Q ss_pred CcccchhhhhhhhhHHHHHHHHHHhcCc-chhhHHhhhhhhhhhhHHhhhHHHHHHHhchh
Q 011022 338 ECKSLCKRAAARLPVVIPIWFLAIVFPF-FGPINSTVGSLLVSFTVYIIPALAHIFTFKSA 397 (495)
Q Consensus 338 ~~~~~~~~~~~r~~~~~~~~~iA~~ip~-~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~ 397 (495)
++...|........++++++|...|+ |-..+++.| ...+.+..++|+++.++.++++
T Consensus 309 --~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 309 --NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred --ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 23345566667777888999999997 889999999 9999999999999999987665
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.91 E-value=1.4e-21 Score=197.61 Aligned_cols=343 Identities=13% Similarity=0.085 Sum_probs=242.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+-+||.+.+.+.+.+..+.||+|+|+||.+.+++|+.+++++++++++++.||+.++.++..++. + -.
T Consensus 4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----------~-g~ 71 (415)
T PRK09664 4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----------V-GS 71 (415)
T ss_pred chhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------C-CC
Confidence 33445578899999999999999999999999999999999999999999999999988865541 1 24
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc-----cccchhhHHHHHHHHhhhccCCCCcchhH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPSFHNYRI 188 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~-----~~~~~~~~~i~~~i~~pl~~l~~l~~l~~ 188 (495)
++..++|+.+||.|+.+..+...+..++.+++|+.-.++.+....+ +.+.+...+++..+...+.+..+ +...+
T Consensus 72 ~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~ 150 (415)
T PRK09664 72 SFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASR 150 (415)
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHH
Confidence 8999999999999999998888888888889998877776653321 23444445666666666666543 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCCCCcc-CCCc----hHHHHHhhhhHHHHhhcccchhHHHHhhccCC-cchhHH
Q 011022 189 WSFLGLLMTTYTAWYLTIASLLHG-QVEGVKH-AGPT----KLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKAI 261 (495)
Q Consensus 189 ~s~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-~~~~----~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~ 261 (495)
.+-+-+...+. ...+.+...... +.+.... .... .+...+.+++++++||+.|+++|++.+.+++. ++.+++
T Consensus 151 ~nr~l~~~~ii-~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~ka 229 (415)
T PRK09664 151 ITSLFLGLKII-SFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKS 229 (415)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHH
Confidence 44333222221 111212221111 1111111 0011 13457778999999999999999999999754 677888
Q ss_pred HHHHHHHHHHHHHhH--HHHH---------HHHhcccccccccccc----cCCCchHHHHHHHHHHHHHHHHHHhhhccH
Q 011022 262 YLLATLYVMTLTLPS--AAAV---------YWAFGDMLLNHSNAFS----LLPRSPFRDMAVILMLIHQFITFGFACTPL 326 (495)
Q Consensus 262 ~~~s~~~~~~~y~~~--g~~g---------Y~~fG~~~~~~~~il~----~l~~~~~~~i~~~~~~i~~~~sypl~~~p~ 326 (495)
+..+..+..++|++. .+.| -..-|+++. .+.. +.++........++..+++.+||--.....
T Consensus 230 Il~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~---~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL 306 (415)
T PRK09664 230 VVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD---SLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGL 306 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch---HHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887543 2222 122233331 1111 223333456677888889999998878889
Q ss_pred HHHHHHHhcCCCcccchhhhhhhhhHHHHHHHHHHhcCc-chhhHHhhhhhhhhhhHHhhhHHHHHHHhch
Q 011022 327 YFVWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPF-FGPINSTVGSLLVSFTVYIIPALAHIFTFKS 396 (495)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~-~~~iislvGa~~~~~l~~ilP~l~~l~~~~~ 396 (495)
+|.+.+.++.+++ ...|........++++++|.+.|+ |-..++..|.. .+.+..++|+++-++.||+
T Consensus 307 ~D~l~D~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 307 FDYLADLFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHhCCCCc--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 9999998864432 345666777888999999999998 88899999986 6788889999999999865
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.90 E-value=8.1e-22 Score=202.19 Aligned_cols=337 Identities=15% Similarity=0.054 Sum_probs=236.4
Q ss_pred HHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhc
Q 011022 45 WFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLG 124 (495)
Q Consensus 45 ~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G 124 (495)
....+++++|+|++++|.++++.|+.++++.+++.++++.++...+.+...++ | +..++.+++++.+|
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~----p--------~~~~~~~~~~~~~G 70 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY----P--------GGASFNTIAKDLLG 70 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C--------CCCCHHHHHHHHhC
Confidence 34567899999999999999999999999999999999999999998775443 2 12489999999999
Q ss_pred hhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccc-----cccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHH
Q 011022 125 KHWRNVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTY 199 (495)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~-----~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~ 199 (495)
|+++++..+......+..+..|.+..++.+..+ ....+.+.+.+++..++.++. .+..+..++++.+.+...+.
T Consensus 71 ~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 71 KTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHH
Confidence 999999988888888888888877666554322 122233333333444444443 34567777777766655443
Q ss_pred HHHHHHHHHhhcCCCCCCcc--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhcc-CCcchhHHHHHHHHHHHHHHHhH
Q 011022 200 TAWYLTIASLLHGQVEGVKH--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKAIYLLATLYVMTLTLPS 276 (495)
Q Consensus 200 ~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~s~~~~~~~y~~~ 276 (495)
..+.+++....+.+.++... ..+..+.+++.+++...++|++|.+++++.++++ ++|+.+|+..++..+++++|+.+
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222232222111111 1123556778888999999999999999999997 55677899999999999999987
Q ss_pred HHHHHHHhcccccc-----c---cc---cccc-CCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCcccchh
Q 011022 277 AAAVYWAFGDMLLN-----H---SN---AFSL-LPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCK 344 (495)
Q Consensus 277 g~~gY~~fG~~~~~-----~---~~---il~~-l~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~~~~~~~~ 344 (495)
........+.+.-+ . +. ...+ +++.....+...+..+++..++.-...+.++...+.++++++ +.+
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~ 307 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKG 307 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCC
Confidence 66555444332110 0 01 1111 222224456677778889999988888888988888865332 233
Q ss_pred hhhhhhhHHHHHHHHHHhcCcch-hhHHhhhhhhhhhhHHhhhHHHHHHHhchh
Q 011022 345 RAAARLPVVIPIWFLAIVFPFFG-PINSTVGSLLVSFTVYIIPALAHIFTFKSA 397 (495)
Q Consensus 345 ~~~~r~~~~~~~~~iA~~ip~~~-~iislvGa~~~~~l~~ilP~l~~l~~~~~~ 397 (495)
|+....+..+++.++|.+.|+.. ..++..| +.++.+.+++|++++++.||++
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 56666777788999999999865 8899999 8889999999999999977543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.89 E-value=1.1e-20 Score=192.27 Aligned_cols=339 Identities=12% Similarity=0.108 Sum_probs=233.7
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVL 119 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~ 119 (495)
+.+.+.+.+..|.+|+|+|+||.+...+|++++++++++++.+..|+++++.|+..+. + + -.++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~----~-------~-~~~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV----P-------A-DTGLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----C-------C-CCCHHHHH
Confidence 5789999999999999999999999999999999999999999999999998864322 1 1 14899999
Q ss_pred HHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccc-----cccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHH
Q 011022 120 DGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (495)
Q Consensus 120 ~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~-----~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~ 194 (495)
++.+||+|+++..+...+..+..+++|..-.++.+... ..+.+...+.+++.++.....+.. .|...+++-+-+
T Consensus 72 ~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~~L~ 150 (403)
T PRK15132 72 KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG-TSSVDLFNRFLF 150 (403)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 99999999999998888888888999988866655322 223344445555555444343432 244444443222
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCC-cchhHHHHHHHHHHHHH
Q 011022 195 LMTTYTAWYLTIASLLHG-QVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKAIYLLATLYVMTL 272 (495)
Q Consensus 195 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~s~~~~~~~ 272 (495)
...+. ........+..+ +.++.... +.+..-.+.+++++++||+.|+++|++.+.+++. +|.+|++..+..+..++
T Consensus 151 ~~~ii-~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 151 SAKII-FLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHH-HHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 21111 111111111111 11111111 1111136778899999999999999999999764 67889999999998888
Q ss_pred HHhHHHHHHHHhccc-----cccc---ccccccC----CCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCcc
Q 011022 273 TLPSAAAVYWAFGDM-----LLNH---SNAFSLL----PRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECK 340 (495)
Q Consensus 273 y~~~g~~gY~~fG~~-----~~~~---~~il~~l----~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~~~~ 340 (495)
|++.=......-+.+ ..++ ++++..+ +++....++..+..+++.+||--....++|.+.+.++.+++
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~- 307 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT- 307 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-
Confidence 875533333322221 1101 1223322 22334566778888899999988788899999988864322
Q ss_pred cchhhhhhhhhHHHHHHHHHHhcCc-chhhHHhhhhhhhhhhHHhhhHHHHHHHhch
Q 011022 341 SLCKRAAARLPVVIPIWFLAIVFPF-FGPINSTVGSLLVSFTVYIIPALAHIFTFKS 396 (495)
Q Consensus 341 ~~~~~~~~r~~~~~~~~~iA~~ip~-~~~iislvGa~~~~~l~~ilP~l~~l~~~~~ 396 (495)
...|........++++++|...|+ |...+++.|.. .+.+.+++|+++-++.+++
T Consensus 308 -~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 308 -VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred -ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 334666777888999999999998 88899998864 7889999999999998754
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.79 E-value=3.3e-16 Score=158.80 Aligned_cols=360 Identities=13% Similarity=0.047 Sum_probs=228.4
Q ss_pred HHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhc
Q 011022 45 WFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLG 124 (495)
Q Consensus 45 ~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G 124 (495)
.+.+.++.+|+|+|+||-.....|.+++++++++...+++|+.+.|.|...+.+ ++..++.|++++.+|
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-----------~~~~~i~~v~~~~lG 93 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-----------NPSGNITETVEEHFG 93 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----------CCCCCHHHHHHHHcC
Confidence 388999999999999999999999999999999999999999999987744331 122589999999999
Q ss_pred hhhhhhhHhhhHHHHhHHHHHHHHHhhhhccc-----ccc-cccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHH
Q 011022 125 KHWRNVGLAFNCTFLLFGSVIQLIACASNIYY-----IND-NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTT 198 (495)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~-----~~~-~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~ 198 (495)
|.++.+..+...+..+..+.+|.....+.+.. +.. ..++....+++.+++....+..+ +.+-+++-+-+...+
T Consensus 94 ~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 94 KTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFI 172 (443)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH
Confidence 99999998888877888888887666544432 211 23444444555554444444322 333333322211111
Q ss_pred HHHHHHHHHHhhcC-CCC-----CC---ccCCC-chHHHHHhhhhHHHHhhcccchhHHHHhh----cc-----C--Ccc
Q 011022 199 YTAWYLTIASLLHG-QVE-----GV---KHAGP-TKLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K--PQK 257 (495)
Q Consensus 199 ~~~~~i~~~~~~~~-~~~-----~~---~~~~~-~~~~~~~~a~~~~~faf~~~~~i~~i~~~----m~-----~--p~~ 257 (495)
..+......+... +.+ +. +.... .-....+.++++++|||+.|+.+|++... ++ + ++|
T Consensus 173 -~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 173 -ASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred -HHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 1111111111111 000 11 00001 11245678889999999999999999887 43 2 345
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHhcccc-----ccccccccc----CCC---------chHHHHHHHHHHHHHHHHH
Q 011022 258 FKAIYLLATLYVMTLTLPSAAAVYWAFGDML-----LNHSNAFSL----LPR---------SPFRDMAVILMLIHQFITF 319 (495)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~-----~~~~~il~~----l~~---------~~~~~i~~~~~~i~~~~sy 319 (495)
-++++..+..+..++|+..-+.....-+.+. +++.+++.. +++ +.......++..+++.+||
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888766555444443221 001222222 232 2234555666777889998
Q ss_pred HhhhccHHHHHHHHhc----CC-Cc--ccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHH
Q 011022 320 GFACTPLYFVWEKAIG----MH-EC--KSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIF 392 (495)
Q Consensus 320 pl~~~p~~~~~~~~~~----~~-~~--~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~ 392 (495)
--....++|.++.+.. +. ++ +.+..+......+.+.++++|..-|++=.+++-+|+-..+.+.|++|...-.|
T Consensus 332 lGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~k 411 (443)
T PRK13629 332 FGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRK 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 7777888888776552 11 11 12233455556677888899999999888888777777788889999877666
Q ss_pred HhchhhhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhh
Q 011022 393 TFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFG 434 (495)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~iiv~~G~~~~v 434 (495)
.-.-++-| + ...|+++++. |++...
T Consensus 412 vp~l~~yr------------~----~~~n~fv~~~-Gl~~i~ 436 (443)
T PRK13629 412 APSLAKYR------------G----RLDNVFVTVI-GLLTIL 436 (443)
T ss_pred cHHHHHhC------------C----CchhHHHHHH-HHHHHH
Confidence 53322111 1 1257888886 887543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.75 E-value=6.2e-16 Score=157.79 Aligned_cols=340 Identities=10% Similarity=0.027 Sum_probs=218.8
Q ss_pred HHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhh
Q 011022 44 AWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLL 123 (495)
Q Consensus 44 a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~ 123 (495)
=.+.+..+.+|+|+|++|....+.||+..++..++...+++++..++.|.... ++. | ..++.|++++.|
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~--~~~--p-------~~~i~~~~~~~f 76 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS--SKN--P-------CEDITEVVEEHF 76 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC--C-------CCCHHHHHHHHc
Confidence 36788999999999999999999999988888888888888888888776322 211 1 248999999999
Q ss_pred chhhhhhhHhhhHHHHhHHHHHHHHHhhhhccc-----ccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHH
Q 011022 124 GKHWRNVGLAFNCTFLLFGSVIQLIACASNIYY-----INDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTT 198 (495)
Q Consensus 124 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~-----~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~ 198 (495)
||+++.+..+....+.+..+.+|.....+.+.. +....+.+....+...+.+-.......+.+.+++-+-+...+
T Consensus 77 Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 77 GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 999999999988888888888887666544321 111222332222222222222233456666666655443332
Q ss_pred HHHHHHHHHHhhcCCCCCCccC--CCchHHHHHhhhhHHHHhhcccchhHHHH----hhccC----CcchhHHHHHHHHH
Q 011022 199 YTAWYLTIASLLHGQVEGVKHA--GPTKLVLYFTGATNILYTFGGHAVTVEIM----HAMWK----PQKFKAIYLLATLY 268 (495)
Q Consensus 199 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~----~~m~~----p~~~~~~~~~s~~~ 268 (495)
...+.+....+.+-+.++.... ....+.....+++..+|||.+|+.++++. ++.++ ++|.+|++..+..+
T Consensus 157 i~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i 236 (397)
T TIGR00814 157 LILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLI 236 (397)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 2222222222222111111111 11245778889999999999999999997 33442 34557888888888
Q ss_pred HHHHHHhHHHHHHHHhcccccc---ccc--ccc----cCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc----
Q 011022 269 VMTLTLPSAAAVYWAFGDMLLN---HSN--AFS----LLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIG---- 335 (495)
Q Consensus 269 ~~~~y~~~g~~gY~~fG~~~~~---~~~--il~----~l~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~---- 335 (495)
.+++|+..-+......+.+.-. ++| ++. ..+.+....+...+..+++..||--....++|.++.++.
T Consensus 237 ~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~ 316 (397)
T TIGR00814 237 LVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLK 316 (397)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 8888877655555555433210 112 122 122233455566777788899998878888888887762
Q ss_pred CCCc--ccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHh
Q 011022 336 MHEC--KSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTF 394 (495)
Q Consensus 336 ~~~~--~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~ 394 (495)
.+++ +++..+...-..+.+.++.+|..-|++=.+++-+|+-..+.+.|++|...-.|.-
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 317 MKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH
Confidence 1111 1122334455567778889999999988888866777677888999987766553
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.56 E-value=2.2e-11 Score=127.96 Aligned_cols=230 Identities=11% Similarity=0.042 Sum_probs=133.8
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++.+.++..+..+++++|+|++..|.. .+++|- ..++..++.+++....+.-+ -|+..+.|.+|
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~----aEl~~~~P~~G-------- 85 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQL----GEMVVEEPVSG-------- 85 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC--------
Confidence 44566789999999999999999998865 556675 36666666666666655554 56666665443
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
+..+.+++.+|+...+++.....+.............+..+.++.+..+...+.+++..+... .-....|..+++....
T Consensus 86 g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 86 SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINA-VNLVNVRLYGETEFWF 164 (458)
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHH-HHHhcchhhhhHHHHH
Confidence 566688899999998887765444332222222222222223333322222222222222222 2233444444443332
Q ss_pred HHHHHH--HHHHHH-HHHhhcCCC---CCCcc------CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhH
Q 011022 194 LLMTTY--TAWYLT-IASLLHGQV---EGVKH------AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKA 260 (495)
Q Consensus 194 ~~~~~~--~~~~i~-~~~~~~~~~---~~~~~------~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 260 (495)
...-+. ..++++ +.....+.. .+.+. ..+.++.++..++....|+|.|-..+....+|+|||+| .+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr 244 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK 244 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH
Confidence 221111 111111 111111111 11111 11345677788889999999999999999999999966 689
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 011022 261 IYLLATLYVMTLTLPSAA 278 (495)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~ 278 (495)
++..++..+.++|+....
T Consensus 245 ai~~~~~~~~~~y~~~~~ 262 (458)
T PRK10249 245 AVNQVVYRILLFYIGSLV 262 (458)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888888888876433
No 17
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.53 E-value=5.9e-12 Score=128.17 Aligned_cols=334 Identities=15% Similarity=0.115 Sum_probs=193.1
Q ss_pred cCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011022 37 HGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (495)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (495)
++.|.+|..+.+..+++|+|++.+|....+.+-..+++..++.+++......++.+...++ | + .+..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~----p-------~--~~~~ 67 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF----P-------E--KNFS 67 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC----C-------C--CCHH
Confidence 3578899999999999999999999987765545577777888888888877776654333 2 1 3788
Q ss_pred HHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccc-ccccccchhhHHHH-HHHHhhhccCCCCcchhHHHHHHH
Q 011022 117 EVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTWTYIF-GACCATTVFIPSFHNYRIWSFLGL 194 (495)
Q Consensus 117 dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~-~~~~~~~~~~~~i~-~~i~~pl~~l~~l~~l~~~s~~~~ 194 (495)
|..++.+||+.+.+.......+....+.......++.+.. +.+..+ .+.+.. ..+..-....+.++.+.+++.+-.
T Consensus 68 ~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp--~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~ 145 (359)
T TIGR00912 68 EILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTP--IIVIIILIIIVSIYIVRKGIEVLLRTAEILL 145 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999998887766666655543333333333321 222222 222221 111222223356777777666555
Q ss_pred HHHHHHH-HHHHHHHhhcCCCCCCccCCCchHHHHHhhhh-HHHHhhcccchhHHHHhhccCCcchhHHHHHHHHHHHHH
Q 011022 195 LMTTYTA-WYLTIASLLHGQVEGVKHAGPTKLVLYFTGAT-NILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTL 272 (495)
Q Consensus 195 ~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~ 272 (495)
...+... +.+......+.+..+..+..+.++.+.+.+.- ...++|.+...+..+..++|+|++.+|....+..++..+
T Consensus 146 ~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~l 225 (359)
T TIGR00912 146 IIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLL 225 (359)
T ss_pred HHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHH
Confidence 4433221 11211111111112222222334455555443 678899988888889999999999999999999999999
Q ss_pred HHhHHHHHHHHhcccccccccccccCCC---------ch----HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCc
Q 011022 273 TLPSAAAVYWAFGDMLLNHSNAFSLLPR---------SP----FRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHEC 339 (495)
Q Consensus 273 y~~~g~~gY~~fG~~~~~~~~il~~l~~---------~~----~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~~~ 339 (495)
|...-+.....+|.+... + ..+|- ++ ...+.-..-.+..+.+..+.+......+.+.++.++.
T Consensus 226 y~~~~~~~i~~lg~~~~~--~--~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
T TIGR00912 226 YILTTFVSISVFGGNVTK--N--LYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY 301 (359)
T ss_pred HHHHHHHHHheecHHHhh--h--hcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 998888778888754321 1 11221 11 1111222234455555556666666777777753221
Q ss_pred ccchhhhhhhhhHHHHHHHHHHhcCc-chhhHHhhh---hhhhhhhHHhhhHHHHHHHhchh
Q 011022 340 KSLCKRAAARLPVVIPIWFLAIVFPF-FGPINSTVG---SLLVSFTVYIIPALAHIFTFKSA 397 (495)
Q Consensus 340 ~~~~~~~~~r~~~~~~~~~iA~~ip~-~~~iislvG---a~~~~~l~~ilP~l~~l~~~~~~ 397 (495)
+ ..+.-.+. ....++ ..|+ ... ..... ...+..+.+++|.++.+...-++
T Consensus 302 ~----~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 302 S----ILILPVLM--VIFSIS-FFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred c----hhHHHHHH--HHHHHH-HccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12221111 122222 3455 322 22222 23335577789998887765443
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.50 E-value=8.9e-11 Score=122.78 Aligned_cols=233 Identities=13% Similarity=-0.021 Sum_probs=132.6
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
+++.+.++++...+++++|+|++.+|..+++.|- .+++..++.+++.......+ -|+..+.|++| ..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~----aeL~~~~P~~G--------G~ 71 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAF----AKCGMFSRKSG--------GM 71 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH----HHHhhhCCCCC--------ch
Confidence 4578899999999999999999999999888886 35666666666666555544 45555555444 34
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccccc-ccchhhHHHHHHHHhh--hccCCCCcchhHHHHH
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDN-LDKRTWTYIFGACCAT--TVFIPSFHNYRIWSFL 192 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~-~~~~~~~~i~~~i~~p--l~~l~~l~~l~~~s~~ 192 (495)
....++.+||+..++......+..............+....+.+. .+.....++...+... ....+..|...++..+
T Consensus 72 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i 151 (438)
T PRK10655 72 GGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSV 151 (438)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 456678899988877665543333222211111111111111111 1111111111111111 1123344445554444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC----CCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHHH
Q 011022 193 GLLMTTYTAWYLTIASLLHGQVE----GVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLATL 267 (495)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~ 267 (495)
.....+...+.+++........+ +++......+.++..++....|+|.|-..+..+.+|+|||+ +.+|++..+..
T Consensus 152 ~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~ 231 (438)
T PRK10655 152 TVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTL 231 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHH
Confidence 33332221112222111111111 11111112235666777889999999999999999999996 57999999999
Q ss_pred HHHHHHHhHHHHHH
Q 011022 268 YVMTLTLPSAAAVY 281 (495)
Q Consensus 268 ~~~~~y~~~g~~gY 281 (495)
++.++|++......
T Consensus 232 ~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 232 GAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987655433
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.47 E-value=2.6e-10 Score=119.77 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=137.1
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLP-YSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
+.+++.+.++..+..+++++|+|++.+| .+.+++|-. +++..++.+++....+..+ -|+..+.|..|
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~----aEl~s~~P~~G------- 76 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRML----GEMAVANPDTG------- 76 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHH----HHHHHhcCCCC-------
Confidence 4566777999999999999999999999 667788864 6666666666665544444 56666655333
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
+..+.+++.+||+..++....................+..+.++.+..+...+.+++..+. -+.-....|..+++...
T Consensus 77 -g~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 77 -SFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVL-TLTNLYSVKSYGEFEFW 154 (452)
T ss_pred -CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH-HHHHHHhcchhhHHHHH
Confidence 5667888999999988877665544433332222233333333333322222222221111 12223345555555544
Q ss_pred HHHHHHHHHH--HHHHH-HhhcCCC----CCCcc------CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-ch
Q 011022 193 GLLMTTYTAW--YLTIA-SLLHGQV----EGVKH------AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 258 (495)
Q Consensus 193 ~~~~~~~~~~--~i~~~-~~~~~~~----~~~~~------~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~ 258 (495)
..+..+...+ +++.. ....+.+ .+.+. ..+..+.+++.++....|+|.|-..+..+.+|+|||+ +.
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~i 234 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHH
Confidence 3332221111 11111 1111110 11110 1133455688888999999999999999999999996 46
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q 011022 259 KAIYLLATLYVMTLTLPSAA 278 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~ 278 (495)
+|++..++..+..+|+....
T Consensus 235 PrAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777778888877543
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.47 E-value=2e-10 Score=121.85 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=130.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPY-SFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
..+++.+.++..+..++++||+|++..|. +++++|- .+++..++.+++....+..+ -|+..+.|+.|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~sl----aELas~~P~aG------- 92 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRAL----GELVLHRPSSG------- 92 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC-------
Confidence 35677889999999999999999998886 6777786 35666666666666555544 56666665443
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHH--HHHHHHhhhccCCCCcchhHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTY--IFGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~--i~~~i~~pl~~l~~l~~l~~~s 190 (495)
+...-+++.+|++..+++.....+.............+....++....+...|.. ++..+... .-....|....+.
T Consensus 93 -g~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-iN~~gvk~~~~i~ 170 (499)
T PRK15049 93 -SFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGT-MNMIGVKWFAEME 170 (499)
T ss_pred -CHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5566778899998887776554443222111111111111111111011122322 22222111 1223344444444
Q ss_pred HHHHHHHHHHHHH--HHH-HHhhcCCCC-----CCc------cCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc
Q 011022 191 FLGLLMTTYTAWY--LTI-ASLLHGQVE-----GVK------HAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 256 (495)
Q Consensus 191 ~~~~~~~~~~~~~--i~~-~~~~~~~~~-----~~~------~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~ 256 (495)
......-+...+. ++. .....+... +.. ...+..+..++.++....|+|.|-..+....+|+|||+
T Consensus 171 ~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~ 250 (499)
T PRK15049 171 FWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh
Confidence 4333221111111 111 111122111 111 01133445556666789999999999999999999997
Q ss_pred c-hhHHHHHHHHHHHHHHHhHHHHHH
Q 011022 257 K-FKAIYLLATLYVMTLTLPSAAAVY 281 (495)
Q Consensus 257 ~-~~~~~~~s~~~~~~~y~~~g~~gY 281 (495)
| .+|++..++..+.++|+.......
T Consensus 251 r~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 251 TMVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 689988888888888876544433
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.45 E-value=4.7e-10 Score=118.42 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=131.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
+.+++.+.++.....+++++|+|++..|.. .+.+|-...++..++.+++.+.....+ -|+..+.|+.|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~----aELas~~P~aG------- 79 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCL----GELSVAMPETG------- 79 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCCC-------
Confidence 355667799999999999999999988766 566775434556666666666665555 46666665443
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
.+....++.+|+...+++.....+.............+..+..+.+..+...+.+++..+.. +...+..|..++.+..
T Consensus 80 -G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~in~~gvk~~~~~~~~ 157 (471)
T PRK11387 80 -AFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIF-GLNVVSTRFFAEGEFW 157 (471)
T ss_pred -CHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 45567788899988877665544332222111111222222222332222222222222222 2222334444444332
Q ss_pred HHHHHHHHHHHHHHH---Hhh------cCCC-CCCcc---C--CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc
Q 011022 193 GLLMTTYTAWYLTIA---SLL------HGQV-EGVKH---A--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 257 (495)
Q Consensus 193 ~~~~~~~~~~~i~~~---~~~------~~~~-~~~~~---~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~ 257 (495)
....-+...+.+++. ... .+.. +..+. . .+....+++.++....|+|.|-..+...-+|+|||+|
T Consensus 158 ~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r 237 (471)
T PRK11387 158 FSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAK 237 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh
Confidence 222111111111111 110 0111 11111 1 1223446677777889999999999999999999965
Q ss_pred -hhHHHHHHHHHHHHHHHhHHHHH
Q 011022 258 -FKAIYLLATLYVMTLTLPSAAAV 280 (495)
Q Consensus 258 -~~~~~~~s~~~~~~~y~~~g~~g 280 (495)
.+|++..+..++..+|+...+..
T Consensus 238 ~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 238 VIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68998889988888888775543
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=99.44 E-value=4.1e-10 Score=117.50 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=138.9
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFS-QLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+.++.+...+++++|+|++.+|.... .+|. ..++..++.+++.......+ .|+.++.|+.| .
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~----~el~~~~p~~G--------g 68 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVY----AELAAMLPVAG--------S 68 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC--------c
Confidence 466789999999999999999999996644 3454 34555555666666554444 45555555433 3
Q ss_pred HHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc----cccchh-----------hHHHHHHHHhhhcc
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND----NLDKRT-----------WTYIFGACCATTVF 179 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~----~~~~~~-----------~~~i~~~i~~pl~~ 179 (495)
..+..++.+||+.+++......+........+....++.+..+.+ ..+... +..+...+.+-...
T Consensus 69 ~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 148 (429)
T TIGR00909 69 PYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYIL 148 (429)
T ss_pred ceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHH
Confidence 334567788999888776655544433322222222222211111 111111 11111111222223
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-ch
Q 011022 180 IPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 258 (495)
Q Consensus 180 l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~ 258 (495)
.+..|..++++.+.....+...+.+++....+...++.+...+.++.++..++....|+|.|...+....+|+|||+ +.
T Consensus 149 ~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i 228 (429)
T TIGR00909 149 YLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI 228 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc
Confidence 45677777777766555443222222223322222233322334556778888899999999999999999999995 56
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHH
Q 011022 259 KAIYLLATLYVMTLTLPSAAAVY 281 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gY 281 (495)
+|++..++.++.++|+.......
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988765443
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.43 E-value=4.3e-10 Score=117.43 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=132.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
.+++.+.++.+...+++++|+|++.+|...++.|-. .++..++.++. +..+..|..|+..+.|+.| .
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~----~l~~al~~aEL~s~~P~~G--------G 69 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG----AMSLAYVYARLATKNPQQG--------G 69 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCC--------C
Confidence 456788999999999999999999999999887753 34444444444 3345555578877776544 3
Q ss_pred HHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhH-HHHHHHH--hhhccCCCCcchhHHHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWT-YIFGACC--ATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~-~i~~~i~--~pl~~l~~l~~l~~~s~ 191 (495)
..+.+++ +|+...+.+..............+.+...+.+..+.+........ ++...+. +-+...+..|..+.++.
T Consensus 70 ~y~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~ 148 (435)
T PRK10435 70 PIAYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTT 148 (435)
T ss_pred hhHHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334455 688777766543222111111111111112111122211111111 1111111 11222334445555544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----CCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHH
Q 011022 192 LGLLMTTYTAWYLTIASLLHGQV----EGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLAT 266 (495)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~ 266 (495)
+..+..+...+.+++....+.+. +++....+.++.++..++....|+|.|-..+....+|+|||+ +.+|++..+.
T Consensus 149 i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~ 228 (435)
T PRK10435 149 IGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGT 228 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHH
Confidence 44333222111111111111111 122222234567888888999999999999999999999995 6899999999
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 011022 267 LYVMTLTLPSAAAVYWAF 284 (495)
Q Consensus 267 ~~~~~~y~~~g~~gY~~f 284 (495)
.++.++|+...+......
T Consensus 229 ~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 229 GLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999988766544333
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.43 E-value=7e-10 Score=117.12 Aligned_cols=235 Identities=9% Similarity=-0.024 Sum_probs=135.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLG-MLSGILFQLFYGLLGSWTAYLISILYVEYRTRKER-EKVDFRNHV 112 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G-~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~-~~~~~~~~~ 112 (495)
.+++.+.+++....+++++|+|++.+|....+.| -...++..++.++........+ .|+.++.|+ +|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~----aEl~s~~P~~sG------- 73 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVF----AILATKKPELDG------- 73 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCCC-------
Confidence 3567889999999999999999999999977654 2223444555555555544433 566666664 34
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccc--cchh-hHHHHHHH--HhhhccCCCCcchh
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--DKRT-WTYIFGAC--CATTVFIPSFHNYR 187 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~--~~~~-~~~i~~~i--~~pl~~l~~l~~l~ 187 (495)
...+..++.+||+..++...............+.......+..+.+.. +... ..++...+ ..-....+..|..+
T Consensus 74 -G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 74 -GIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred -ChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 334466889999988877665443322222222222222222222211 1111 11111111 12222344566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hcCCC--CCCcc----CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchh
Q 011022 188 IWSFLGLLMTTYTAWYLTIASL--LHGQV--EGVKH----AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK 259 (495)
Q Consensus 188 ~~s~~~~~~~~~~~~~i~~~~~--~~~~~--~~~~~----~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~ 259 (495)
++..+.....+...+.+++... .++.. .+... .....+..+..++....|+|.|-.....+.+|+||+|+.+
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iP 232 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccch
Confidence 6665554433322111111111 12211 11111 1112355677778889999999999999999999966679
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 011022 260 AIYLLATLYVMTLTLPSAAAVY 281 (495)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gY 281 (495)
|.+..+..++.++|+.......
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765533
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.42 E-value=8.9e-10 Score=115.74 Aligned_cols=229 Identities=11% Similarity=0.040 Sum_probs=131.5
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
+.+++.+.++..+..++++||+|++-.|.. .+++|- ..++..++.+++.+..+. |.-|+..+.|..|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~----s~aEl~s~~P~aG------- 76 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMR----QLGEMVVEEPVAG------- 76 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHH----HHHHHHHhcCCCC-------
Confidence 456677799999999999999999888866 555664 345555555555544444 4456666665433
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
++.+-+++.+||...++......+.............+..+..+.+..+...+.+++..+...+ -....|..+.++..
T Consensus 77 -g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~l-N~~gv~~~~~~~~~ 154 (456)
T PRK10238 77 -SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAI-NLTNVKVFGEMEFW 154 (456)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH
Confidence 5556677889999998887665555444433333334444443333333322322222222111 22234445454443
Q ss_pred HHHHHHHHHHHHHH---HHhhcC--CCC-CCc----cC--CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hh
Q 011022 193 GLLMTTYTAWYLTI---ASLLHG--QVE-GVK----HA--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 259 (495)
Q Consensus 193 ~~~~~~~~~~~i~~---~~~~~~--~~~-~~~----~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 259 (495)
.....+...+.+++ .....+ .+. ... .. .+..+.++..+++...|+|.|-..+....+|+|||+| .+
T Consensus 155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iP 234 (456)
T PRK10238 155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIP 234 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHH
Confidence 33332211111111 111111 111 111 11 1334556667778899999999999999999999965 68
Q ss_pred HHHHHHHHHHHHHHHhH
Q 011022 260 AIYLLATLYVMTLTLPS 276 (495)
Q Consensus 260 ~~~~~s~~~~~~~y~~~ 276 (495)
|++..+...+.++|+..
T Consensus 235 rAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 235 KATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877777777766543
No 26
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.41 E-value=2.3e-09 Score=112.79 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=134.1
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
+.+++.+.++..+..+.+++|+|++.+|.. .+.+|- ..++..++.+++....+..+ .|+..+.|++|
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~----aEl~s~~P~~G------- 73 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRAL----GEMSVHNPAAS------- 73 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHH----HHHHHHcCCCC-------
Confidence 455667899999999999999999999876 556675 35667777777777666555 46666655443
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
...+.+++.+||...++......+.....+.......+.....+.+..+...+.+++.++.. ....+..|..+.+..+
T Consensus 74 -g~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~ 151 (457)
T PRK10580 74 -SFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIIC-AVNLMSVKVFGELEFW 151 (457)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHHccchhHHHHHHH
Confidence 44456788999998888776554443322222222222222223333333333332222222 2223345555555443
Q ss_pred HHHHHHHHHHHHH-------HHHhhcC-CCCCC----cc--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-
Q 011022 193 GLLMTTYTAWYLT-------IASLLHG-QVEGV----KH--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (495)
Q Consensus 193 ~~~~~~~~~~~i~-------~~~~~~~-~~~~~----~~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~- 257 (495)
.....+...+.++ .....++ .+.+. +. ..+..+.+++.++....|+|.|-..+....+|+|||+|
T Consensus 152 ~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~ 231 (457)
T PRK10580 152 FSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKS 231 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhH
Confidence 3222211111111 1111111 11111 11 12334567788888999999999999999999999976
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 011022 258 FKAIYLLATLYVMTLTLPSA 277 (495)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g 277 (495)
.+|++..+...+.++|+...
T Consensus 232 iPrAi~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 232 IPRAINSVPMRILVFYVGTL 251 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888777777777776653
No 27
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.40 E-value=3.3e-10 Score=118.70 Aligned_cols=234 Identities=11% Similarity=0.031 Sum_probs=131.7
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+.+++.+.++++...+++++|+|++.+|....+.|.. .+...++.++..... .-+.-|+..+.|+.|.
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~----al~~aEL~s~~P~aGG------- 72 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGL----SMVYAKMSSLDPSPGG------- 72 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHhhCCCCCC-------
Confidence 3556788999999999999999999999998887642 333344444443333 3344577777765542
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchh-hHHHHHHHHhhhc--cCCCCcchhHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRT-WTYIFGACCATTV--FIPSFHNYRIWS 190 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~-~~~i~~~i~~pl~--~l~~l~~l~~~s 190 (495)
...-+++.+||...++......+..................++.+..+... ..++...+.+.+. -....|...++.
T Consensus 73 -~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~ 151 (445)
T PRK10644 73 -SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQ 151 (445)
T ss_pred -hhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 223478889998887766544432221111111111111111222111111 1111111111222 233455666655
Q ss_pred HHHHHHHHHHHHHHHHHHh--hcCC--CCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHH
Q 011022 191 FLGLLMTTYTAWYLTIASL--LHGQ--VEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLA 265 (495)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s 265 (495)
.+.....+...+.+.+... .++. .++.+......+..+..++....|+|.|-.......+|+|||+ +.+|++..+
T Consensus 152 ~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s 231 (445)
T PRK10644 152 AVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHH
Confidence 5444333221111111111 1221 1111111122345566677789999999999999999999996 579999999
Q ss_pred HHHHHHHHHhHHHHH
Q 011022 266 TLYVMTLTLPSAAAV 280 (495)
Q Consensus 266 ~~~~~~~y~~~g~~g 280 (495)
..++.++|+++.+.-
T Consensus 232 ~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 232 VLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876653
No 28
>PRK10746 putative transport protein YifK; Provisional
Probab=99.39 E-value=2.4e-09 Score=112.63 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=132.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++.+.++..+..+.++||+|++..|.. .+.+|- ..++..++.+++.+..+..+ -|+..+.|+.|
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~----aEl~~~~P~sG-------- 74 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSM----GEMLFLEPVTG-------- 74 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCC--------
Confidence 45567789999999999999999987754 666776 35556666666666655555 45555555333
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
++.+-+++.+|+..++++.....+.............+..+.++.+..+...+..++..+...+ -....|..+.+....
T Consensus 75 g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~l-N~~gv~~~~~~e~~~ 153 (461)
T PRK10746 75 SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALA-NLAAVRLYGEIEFWF 153 (461)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 6777889999999888776644443332222222233333333434333333333322222222 222334444433222
Q ss_pred HHHHHHH--HHHHHHH--H-hhcCCC---CCCcc------CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-h
Q 011022 194 LLMTTYT--AWYLTIA--S-LLHGQV---EGVKH------AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (495)
Q Consensus 194 ~~~~~~~--~~~i~~~--~-~~~~~~---~~~~~------~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~ 258 (495)
...-+.. .++++.. . ...+.. .+.+. ..+.++.++..++....|+|.|-..+....+|+|||+| .
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i 233 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH
Confidence 2111111 1111110 1 111111 11111 11334677888899999999999999999999999964 6
Q ss_pred hHHHHHHHHHHHHHHHhHHHH
Q 011022 259 KAIYLLATLYVMTLTLPSAAA 279 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~ 279 (495)
+|++..+...+.++|+...+.
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~ 254 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFV 254 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777888765333
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.38 E-value=3.8e-09 Score=111.42 Aligned_cols=232 Identities=10% Similarity=0.049 Sum_probs=131.3
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPY-SFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
+.+++.+.++.....++++||+|++-.|. +++++|. ..++..++.+++......-+ -|+....+ .-
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~----aEl~s~~~--------~~ 83 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAM----GELLLSNL--------EY 83 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------CC
Confidence 36667778999999999999999999765 6778887 35556666666665555444 34433221 11
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
.++.+.+++.+||...+++...................+..+.++.+......+.+++..+.. +.-....|..+++..+
T Consensus 84 ~~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~-~iN~~g~~~~~~i~~~ 162 (469)
T PRK11049 84 KSFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLL-SLNLATVKMFGEMEFW 162 (469)
T ss_pred CcHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 256678999999999988876655433222111222222222222232222222222211121 1222334555555544
Q ss_pred HHHHHHHHHHHHHHHHh--h-cC--CCC----CCc----c--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc
Q 011022 193 GLLMTTYTAWYLTIASL--L-HG--QVE----GVK----H--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 257 (495)
Q Consensus 193 ~~~~~~~~~~~i~~~~~--~-~~--~~~----~~~----~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~ 257 (495)
.....+...+.+++..+ . .+ .+. +.. . ..+..+.+++.++....|+|.|-..+....+|+|||+|
T Consensus 163 ~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 242 (469)
T PRK11049 163 FAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK 242 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh
Confidence 33322211111111111 1 11 010 111 1 11344567888899999999999999999999999965
Q ss_pred -hhHHHHHHHHHHHHHHHhHHHH
Q 011022 258 -FKAIYLLATLYVMTLTLPSAAA 279 (495)
Q Consensus 258 -~~~~~~~s~~~~~~~y~~~g~~ 279 (495)
.+|++..+...+.++|.+....
T Consensus 243 ~iPrai~~~~~~~~~~y~l~~~~ 265 (469)
T PRK11049 243 SLPRAINSIPIRIIMFYVFALIV 265 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888876666677777765443
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.37 E-value=1.5e-09 Score=114.43 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=133.5
Q ss_pred cCCchHHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 37 HGGSVYDAWFSCSSNQVAQVLLTLPYSFS-QLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
|+.+.++.+...++++||+|++.+|.... .+|....++..++.++...... .+..|+..+.|+.+ -..
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~a----l~~aeL~s~~P~~g-------GG~ 69 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALA----FSFQNLANKKPELD-------GGV 69 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHH----HHHHHHHhhCCCCC-------CCh
Confidence 46678999999999999999999998754 4554333444555555555543 34456666665321 023
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccc--cchhhHHH-HHHH--HhhhccCCCCcchhHHH
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--DKRTWTYI-FGAC--CATTVFIPSFHNYRIWS 190 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~--~~~~~~~i-~~~i--~~pl~~l~~l~~l~~~s 190 (495)
.+.+++.+||+..++......+........+.........++.+.. +...+..+ ...+ .+-....+..|..++++
T Consensus 70 y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 70 YSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred hhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3458889999988877655443322222223222222222222211 11122111 1111 11122234556666655
Q ss_pred HHHHHHHHHHHHHHHHHH--hhcCCC--CC-Ccc-----CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchhH
Q 011022 191 FLGLLMTTYTAWYLTIAS--LLHGQV--EG-VKH-----AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKA 260 (495)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~--~~~~~~--~~-~~~-----~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 260 (495)
.+..+..+...+.+++.. ..++.. ++ .+. .....+..+..++....|+|.|-.....+.+|.||+|+.+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ 229 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH
Confidence 554433222111111111 112211 01 010 01122445567778899999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhc
Q 011022 261 IYLLATLYVMTLTLPSAAAVYWAFG 285 (495)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gY~~fG 285 (495)
++..+...+..+|+.+.+..+...+
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999988766554443
No 31
>PRK11021 putative transporter; Provisional
Probab=99.36 E-value=1.7e-09 Score=112.14 Aligned_cols=225 Identities=9% Similarity=-0.018 Sum_probs=126.7
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFS-QLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
+.+++....+++++|+|++.+|.... ++|- ..++..++.+++.......+ .|+..+.|++| .....
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~----aEl~s~~P~aG--------G~y~y 68 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVF----ARLGRHFPHAG--------GPAHF 68 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC--------CHHHh
Confidence 57899999999999999999997644 4563 45666666666655554444 56666665444 44556
Q ss_pred HHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHH-HHHHHhhhccCCCCcchhHHHHHHHHHH
Q 011022 119 LDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI-FGACCATTVFIPSFHNYRIWSFLGLLMT 197 (495)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 197 (495)
.++.+||+..++..........................+.+..+...+.+. ...+.+-+...+..|..+++..+..+..
T Consensus 69 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~ 148 (410)
T PRK11021 69 VGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLI 148 (410)
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 778899988877665443321111111111111111111111111111111 1111112223344555555444332211
Q ss_pred HHHHHHHHHHHhhcCCCCCC--ccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHHHHHHHHHH
Q 011022 198 TYTAWYLTIASLLHGQVEGV--KHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLATLYVMTLTL 274 (495)
Q Consensus 198 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~ 274 (495)
+ .++.+.....+....+. ....+.++.++..++....|+|.|...+...-+|+|||+ +.+|++..+..++.++|+
T Consensus 149 ~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYi 226 (410)
T PRK11021 149 V--ALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYW 226 (410)
T ss_pred H--HHHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHH
Confidence 1 11111111111111111 111234567888888999999999999999999999995 579999999999999998
Q ss_pred hHHHH
Q 011022 275 PSAAA 279 (495)
Q Consensus 275 ~~g~~ 279 (495)
...+.
T Consensus 227 l~~~~ 231 (410)
T PRK11021 227 ACTVV 231 (410)
T ss_pred HHHHH
Confidence 87654
No 32
>PRK10836 lysine transporter; Provisional
Probab=99.35 E-value=5.5e-09 Score=110.79 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=126.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPY-SFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++.+.++..+..++++||+|++.+|. +.+++|-...++..++.++++...+.-+ -|+..+.|+.|
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~----aEL~s~~P~sG-------- 80 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSL----GELAAYMPVSG-------- 80 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCC--------
Confidence 4456778999999999999999999996 5777786445666677777766665545 56666666544
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
.....+++.+|+..++++......................+.++.+..+...+..++..+.. .......|..+......
T Consensus 81 g~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 81 SFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIF-LLNYISVRGFGEAEYWF 159 (489)
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH-HHHHHcchhhhhhHHHH
Confidence 34445566777776665544333222111111111111112222222222222222222221 12222334333333222
Q ss_pred HHHHHHH--HHHH----HHHHhhcCCC----CCCcc---CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hh
Q 011022 194 LLMTTYT--AWYL----TIASLLHGQV----EGVKH---AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 259 (495)
Q Consensus 194 ~~~~~~~--~~~i----~~~~~~~~~~----~~~~~---~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 259 (495)
.+.-+.. .+++ ......++.. .+++. ..+..+..++.+.....|+|.|-..+....+|+|||+| .+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 2111110 1011 1111111111 11111 01223445555555677999999999999999999965 68
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 011022 260 AIYLLATLYVMTLTLPSAAAV 280 (495)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~g 280 (495)
|++..++..+.++|+.....-
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~ 260 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILII 260 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999899999999998775443
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.35 E-value=5.2e-09 Score=110.74 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=134.1
Q ss_pred cCCchHHHHHHHHHhhhhhhhchHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 37 HGGSVYDAWFSCSSNQVAQVLLTLP-YSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
++.+.++..+..+..++|+|++..| .+.+++|-...++..++.+++.+..+..+ -|+..+.|+.+ -.|
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~----aEl~s~~P~~g-------G~~ 70 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSL----GEMATFYPVVS-------GSF 70 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC-------CCH
Confidence 4567899999999999999999866 55677775433555666666666665554 46655554211 257
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHH
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLL 195 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~ 195 (495)
...+++.+||...+++.....+.............+..+.++.+......|..+...+ +-+...+..|..++++.+...
T Consensus 71 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 71 ATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVF-IVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHH
Confidence 7788999999999877665544433332222223333333333322333333322221 112233445565555544332
Q ss_pred HHHHHH--HHHH-HHHhhcCC--CC--C---Cc---cCCC----chHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-
Q 011022 196 MTTYTA--WYLT-IASLLHGQ--VE--G---VK---HAGP----TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (495)
Q Consensus 196 ~~~~~~--~~i~-~~~~~~~~--~~--~---~~---~~~~----~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~- 257 (495)
.-+... ++++ +.....+. .+ . .. ...+ ..+.++..++....|+|.|-..+..+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 211111 1111 11111111 00 0 00 0011 12567777888899999999999999999999965
Q ss_pred hhHHHHHHHHHHHHHHHhHHH
Q 011022 258 FKAIYLLATLYVMTLTLPSAA 278 (495)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~ 278 (495)
.+|++..+..++.++|+...+
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999987643
No 34
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.33 E-value=2e-09 Score=115.40 Aligned_cols=234 Identities=12% Similarity=0.073 Sum_probs=136.8
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSF--SQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af--~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~ 111 (495)
..+++.+.++.+..-++.++|+|++.+|... +.+|-. .++..++.++.+... .-|..|+..+.|+.|..|.
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~----al~yaElas~~P~sGg~Y~-- 97 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLS----GFCYAEFGARVPKAGSAYL-- 97 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCccee--
Confidence 3556678999999999999999999999643 347754 455555556555554 4444677777776664432
Q ss_pred cccHHHHHHHhhchhhhhhhHhhhHHHH-hHHHH------HHHHH-hhhhcccc-------c-ccccchh-hHHHHHHHH
Q 011022 112 VIQWFEVLDGLLGKHWRNVGLAFNCTFL-LFGSV------IQLIA-CASNIYYI-------N-DNLDKRT-WTYIFGACC 174 (495)
Q Consensus 112 ~~~y~dl~~~~~G~~~~~~~~~~~~~~~-~g~~v------~y~i~-~~~~~~~~-------~-~~~~~~~-~~~i~~~i~ 174 (495)
-.++.+|+...+++.....+.. .+... .|+.. .......+ . +...... ...+...+.
T Consensus 98 ------y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l 171 (557)
T TIGR00906 98 ------YSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL 171 (557)
T ss_pred ------eHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH
Confidence 3345678888877765444332 22211 11110 11001100 0 1000111 111111112
Q ss_pred hhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc--------cCCCchHHHHHhhhhHHHHhhcccchhH
Q 011022 175 ATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQVEGVK--------HAGPTKLVLYFTGATNILYTFGGHAVTV 246 (495)
Q Consensus 175 ~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~faf~~~~~i~ 246 (495)
+-+...+..|..++++.+.....+...+.+++......+..++. ...+..+.+++.+.....|+|.|-..+.
T Consensus 172 ~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~ 251 (557)
T TIGR00906 172 LAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIA 251 (557)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHH
Confidence 22233456777777766555443322222223333333222221 1123345678888899999999999999
Q ss_pred HHHhhccCCcc-hhHHHHHHHHHHHHHHHhHHHHH
Q 011022 247 EIMHAMWKPQK-FKAIYLLATLYVMTLTLPSAAAV 280 (495)
Q Consensus 247 ~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~g 280 (495)
...+|+|||+| .++.+..++.+++++|+.+.+.-
T Consensus 252 ~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 252 TTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HhHHhccCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 79999999999999998876543
No 35
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.28 E-value=1.1e-08 Score=107.10 Aligned_cols=230 Identities=9% Similarity=-0.049 Sum_probs=129.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+.+++.+.++.....+..++|....+.+.++++.|+..-++..++.+++....+.. ..|+..+.|+.|
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~----~aEl~s~~P~~G-------- 71 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFS----LAELSTMIPTAG-------- 71 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCC--------
Confidence 35567788999888889899854556688888999864444444444444444333 356666666444
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
......++.+||...+++.....+........+....++.+..+.+..+...+.+++..+.. +...+..|..+++..+.
T Consensus 72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFI-GINILGVGEAAKLEFVV 150 (442)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Confidence 44456788999998887766554443333333333333333333332222222222222222 22223445555544433
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-----C---ccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHHHHH
Q 011022 194 LLMTTYTAWYLTIASLLHGQVEG-----V---KHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAIYLL 264 (495)
Q Consensus 194 ~~~~~~~~~~i~~~~~~~~~~~~-----~---~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~ 264 (495)
.+..+...++++.....+.+..+ . +...+..+.+++.++....|+|.|...+...-+|+|||+| .+|++..
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~ 230 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 32222111111111111101000 0 1112233456777788889999999999999999999954 6899988
Q ss_pred HHHHHHHHHHhH
Q 011022 265 ATLYVMTLTLPS 276 (495)
Q Consensus 265 s~~~~~~~y~~~ 276 (495)
+..++..+|+..
T Consensus 231 s~~~~~~~~~~~ 242 (442)
T TIGR00908 231 AILTLLALAAGI 242 (442)
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 36
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.27 E-value=3.5e-09 Score=106.06 Aligned_cols=279 Identities=15% Similarity=0.107 Sum_probs=173.7
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011022 38 GGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (495)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~d 117 (495)
+.|..|...-+..+++|+|++.+|....+.+ -.|.+..++.++......++..+..+++ + + ++..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~----p-------~--~~l~~ 66 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF----P-------G--KTLVE 66 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC----C-------C--CCHHH
Confidence 4678999999999999999999999976654 1444455555555555555554443332 1 1 48999
Q ss_pred HHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccc-ccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHH
Q 011022 118 VLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLM 196 (495)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~-~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~ 196 (495)
..++.+||+.+.+..+....+.+......+....+.+.. +.+..+.... .....+.......+.++.+.+.+.+-...
T Consensus 67 ~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i-~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 67 ISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVI-ILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999888877777766655444444444332 2333222222 22222233333456677777755554444
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchhHHHHHHHHHHHHHHHhH
Q 011022 197 TTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVMTLTLPS 276 (495)
Q Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~y~~~ 276 (495)
.+...+.+......+.+..+..+....++.+.+.+.-...+.|.+...+.-+...+|+|++.+|....+..++..+|...
T Consensus 146 ~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~ 225 (320)
T PF03845_consen 146 FLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFI 225 (320)
T ss_pred HHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 43332233333333333233334445667777887777888898888888899999999999999999999999888888
Q ss_pred HHHHHHHhcccccccccccccCCC---------c-h---HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc
Q 011022 277 AAAVYWAFGDMLLNHSNAFSLLPR---------S-P---FRDMAVILMLIHQFITFGFACTPLYFVWEKAIG 335 (495)
Q Consensus 277 g~~gY~~fG~~~~~~~~il~~l~~---------~-~---~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~ 335 (495)
-+.....||.+.. +. ..+|- + - ...+.-..-....+.+..+...-..+.+.+.++
T Consensus 226 ~~~~i~vfG~~~~--~~--~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 226 IFITIGVFGPELA--KK--LTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHhcCHHHH--hc--eecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7888888886431 11 22221 0 0 111111222445555556666667777777775
No 37
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.27 E-value=2.2e-08 Score=104.90 Aligned_cols=217 Identities=12% Similarity=0.087 Sum_probs=123.6
Q ss_pred HHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhchhh
Q 011022 49 SSNQVAQVLLTLPY-SFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHW 127 (495)
Q Consensus 49 ~~~~iG~GiLsLP~-af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G~~~ 127 (495)
++++||+|++-.|. +.+++|. ..++..++.+++....+..+ -|+..+.|++| ...+.+++.+||..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~----aEL~s~~P~~G--------g~y~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRML----AEMAVATPDTG--------SFSTYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC--------CHHHHHHHHcChHH
Confidence 56889999999887 7888886 36666666677666665444 56666655443 56667789999999
Q ss_pred hhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011022 128 RNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIA 207 (495)
Q Consensus 128 ~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~ 207 (495)
.+++...................+..+..+.+..+...+.+++..+...+ -....|..+.+..+....-+...+.+++.
T Consensus 71 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 71 GYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGS-NLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88776655443322221111111111122222222222222222222222 22334444444443333222211111111
Q ss_pred Hh--hcCCC-----CCC----c--cCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHHHHHHHHHHHHHH
Q 011022 208 SL--LHGQV-----EGV----K--HAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAIYLLATLYVMTLT 273 (495)
Q Consensus 208 ~~--~~~~~-----~~~----~--~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~~~~~~~y 273 (495)
.+ ..+.. .+. + ...+..+.++..++....|+|.|-..+....+|+|||+| .+|++..++..+.++|
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 11 12211 111 1 012345668888999999999999999999999999975 6888888888888888
Q ss_pred HhHHHH
Q 011022 274 LPSAAA 279 (495)
Q Consensus 274 ~~~g~~ 279 (495)
+...+.
T Consensus 230 il~~~~ 235 (446)
T PRK10197 230 LCSIFV 235 (446)
T ss_pred HHHHHH
Confidence 875444
No 38
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.25 E-value=3e-09 Score=107.03 Aligned_cols=342 Identities=12% Similarity=0.092 Sum_probs=192.3
Q ss_pred cccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++.+..+--+.-+...||+| .|+--.+.+.+|-- -++..++.|++...-++.|.+ +.... ++..
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGE----m~~~~--------p~~g 77 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGE----MLVAN--------PVSG 77 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHH----HHHhC--------CCCC
Confidence 4456667788888999999999 45678888889865 355566677777777666654 43332 2234
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhh--hccCCCCcchhHH-H
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCAT--TVFIPSFHNYRIW-S 190 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~p--l~~l~~l~~l~~~-s 190 (495)
|+.+.+++.+|++++++....-.......++..+...+..++++.++.++..+.++..++... +.-.|.+.++.++ +
T Consensus 78 SF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 78 SFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777777777777777777777777776665555554443333 2234555555542 2
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cCC--CCCCc----c--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcch-
Q 011022 191 FLGLLMTTYTAWYLTIASLL---HGQ--VEGVK----H--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF- 258 (495)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~~~---~~~--~~~~~----~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~- 258 (495)
.+=+.. ++..+++-...+. .+. ..+++ + .-|+.+.+++.++-+.+|||.+...+=--..|-|||+|-
T Consensus 158 lIKV~a-Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i 236 (462)
T COG1113 158 LIKVAA-IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI 236 (462)
T ss_pred HHHHHH-HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence 222221 1111111111111 111 11221 1 246788999999999999999999999999999999764
Q ss_pred hHHHH-----HHHHHHHHHHHhHHHHHHHHhcccccccccccccCCC---chHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 011022 259 KAIYL-----LATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPR---SPFRDMAVILMLIHQFITFGFACTPLYFVW 330 (495)
Q Consensus 259 ~~~~~-----~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~---~~~~~i~~~~~~i~~~~sypl~~~p~~~~~ 330 (495)
+|+.+ +....+..+.+++.+.-+-.++++. |+...-+.. +....+.+.....+...+.--.....-.++
T Consensus 237 pkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~---SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL 313 (462)
T COG1113 237 PKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG---SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRML 313 (462)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC---CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHH
Confidence 56544 3333344444455555565554432 333333321 112222222222222222211111111222
Q ss_pred HHH---------hcCCCcccchhh-hhhhhhHHHHHHHHHHhcCc--chhhHHhhhhhhhhhhHHhhhHHHHHHHhc
Q 011022 331 EKA---------IGMHECKSLCKR-AAARLPVVIPIWFLAIVFPF--FGPINSTVGSLLVSFTVYIIPALAHIFTFK 395 (495)
Q Consensus 331 ~~~---------~~~~~~~~~~~~-~~~r~~~~~~~~~iA~~ip~--~~~iislvGa~~~~~l~~ilP~l~~l~~~~ 395 (495)
-.+ +.+-+++....+ .+..+....+..++....|. |..+.+..+... ...+.+=.+.|++.+|
T Consensus 314 ~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 314 YSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 221 111111222222 33445555666677788883 444444433333 3334444677788776
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.22 E-value=1.6e-08 Score=107.62 Aligned_cols=239 Identities=11% Similarity=0.063 Sum_probs=131.9
Q ss_pred cccccCCchHHHHHHHHHhhhhhhhchHHHH-HHhhChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 011022 33 NFFWHGGSVYDAWFSCSSNQVAQVLLTLPYS-FSQLGMLSGI--LFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFR 109 (495)
Q Consensus 33 ~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~--i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~ 109 (495)
++.+++.+.+++....+++++|+|++..|.. .+++|-. |. +..++.+++....+..+ -|+..+.|+.|
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~----aELas~~P~sG---- 108 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVY----AELGTTIPKSG---- 108 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC----
Confidence 4567788899999999999999999998865 5556743 32 33344555555444444 46666666444
Q ss_pred cccccHHHHHHHhhchhhhhhhHhhhHH-HHhHHHHHHHHHhhhhc-ccccccc--cchhhHHHHHHH--HhhhccCCCC
Q 011022 110 NHVIQWFEVLDGLLGKHWRNVGLAFNCT-FLLFGSVIQLIACASNI-YYINDNL--DKRTWTYIFGAC--CATTVFIPSF 183 (495)
Q Consensus 110 ~~~~~y~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~~~~-~~~~~~~--~~~~~~~i~~~i--~~pl~~l~~l 183 (495)
......++.+||...++....... ...+....+....++.+ ..+.+.. +.....++...+ .+-+......
T Consensus 109 ----G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gv 184 (501)
T TIGR00911 109 ----GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSV 184 (501)
T ss_pred ----chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 233345668898887766543322 11111111111122211 1111111 111111111111 1112223445
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH---hhcCCCCCC--cc---CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCC
Q 011022 184 HNYRIWSFLGLLMTTYTAWYLTIAS---LLHGQVEGV--KH---AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP 255 (495)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~i~~~~---~~~~~~~~~--~~---~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p 255 (495)
|...++..+.....+...+.+++.. ...+...+. +. ....+..++..++....|+|.|-..+..+.+|+|||
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 6666665554443332221222222 122221111 10 111235677778889999999999999999999999
Q ss_pred cc-hhHHHHHHHHHHHHHHHhHHHHHHHHh
Q 011022 256 QK-FKAIYLLATLYVMTLTLPSAAAVYWAF 284 (495)
Q Consensus 256 ~~-~~~~~~~s~~~~~~~y~~~g~~gY~~f 284 (495)
+| .+|++..+..++.++|++..+.-....
T Consensus 265 ~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54 799999999999999998765443333
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.20 E-value=1.2e-08 Score=106.34 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=138.3
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLG-SWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls-~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
++++++...++.++|+|+...| ...+.|.. .++..++.+++. ....... .|+.++.+++| .....
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~----~el~~~~p~~G--------G~y~~ 67 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSY----AELSSAYPSAG--------GIYVW 67 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHH----HHHHTTTTSST--------THHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHH----HHHhccCCCcC--------eeeeh
Confidence 5789999999999999999999 77777776 455555444444 3443333 46655555443 45567
Q ss_pred HHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccc-ccccccc-h-hhHHHHH--HHHhhhccCCCCcchhHHHHHH
Q 011022 119 LDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDK-R-TWTYIFG--ACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~-~~~~~~~-~-~~~~i~~--~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
.++.+||+.+++......+........+.....+.+.. +.+.... . ...++.. .+..-....+..|..+++..+.
T Consensus 68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhh
Confidence 78889999998877666555544443333334333322 2222211 1 1112111 1122222344566666666555
Q ss_pred HHHHH-HHHHHHHHHHhhcCCCCC-------CccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcchhHHHHHH
Q 011022 194 LLMTT-YTAWYLTIASLLHGQVEG-------VKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLA 265 (495)
Q Consensus 194 ~~~~~-~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~s 265 (495)
....+ ...+.+++..+.....+. .+...+..+..++.++....|+|.|-.....+.+|+|| |+.+|.+..+
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence 44443 222222222332221111 11122333445678889999999999999999999998 7899999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcc
Q 011022 266 TLYVMTLTLPSAAAVYWAFGD 286 (495)
Q Consensus 266 ~~~~~~~y~~~g~~gY~~fG~ 286 (495)
..++.++|......-....++
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTH
T ss_pred hhHHHHHHhhhhheeeecccc
Confidence 999999999886665555544
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.18 E-value=2.3e-08 Score=112.58 Aligned_cols=230 Identities=13% Similarity=0.045 Sum_probs=130.5
Q ss_pred ccCCchHHHHHHH-HHhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccccccccc
Q 011022 36 WHGGSVYDAWFSC-SSNQVAQVLLT-LPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTR-KEREKVDFRNHV 112 (495)
Q Consensus 36 ~~~~s~~~a~~~l-~~~~iG~GiLs-LP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~-~~~~~~~~~~~~ 112 (495)
.++.++++.++.- +.+++|+|++- +++...++|...+++.+++.++++..+..-+. ++... .++.|
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~s----eiaTng~p~aG------- 143 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMS----AIATNGVVKGG------- 143 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCcc-------
Confidence 3456677777777 99999999766 77888899988888888888999888876664 44433 33233
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc----------cccchhhHHHHHHHHhhhccCCC
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND----------NLDKRTWTYIFGACCATTVFIPS 182 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~----------~~~~~~~~~i~~~i~~pl~~l~~ 182 (495)
.-....++.+|+..+..+.++.......++..|.+..++.+..+.+ ..+.+.+..+..+++..+. ...
T Consensus 144 -G~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~G 221 (953)
T TIGR00930 144 -GAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAG 221 (953)
T ss_pred -HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-Hhh
Confidence 2223567778887776665544443333333443333322211111 0112222222222222222 233
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCC-CC--C--------Ccc----CCCchHHHHHhhhhHHHHhhcccchhHH
Q 011022 183 FHNYRIWSFLGLLMTTYTAWYLTIASLLHGQ-VE--G--------VKH----AGPTKLVLYFTGATNILYTFGGHAVTVE 247 (495)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~-~~--~--------~~~----~~~~~~~~~~~a~~~~~faf~~~~~i~~ 247 (495)
.+..+++..+.++..+...+.+++..+.... .+ + ... ..+....+++..++++.+||.|......
T Consensus 222 vk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan 301 (953)
T TIGR00930 222 MEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN 301 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333322211111111111110 00 0 000 0011112356667788889999999999
Q ss_pred HHhhccCCcc-hhHHHHHHHHHHHHHHHhHHH
Q 011022 248 IMHAMWKPQK-FKAIYLLATLYVMTLTLPSAA 278 (495)
Q Consensus 248 i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (495)
+-.|+|||+| .++....++.+++++|+++.+
T Consensus 302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHhccChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999965 689999999999999998865
No 42
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.15 E-value=1.3e-07 Score=99.22 Aligned_cols=233 Identities=11% Similarity=0.043 Sum_probs=129.6
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSF-SQLGML-SGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af-~~~G~~-~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~ 111 (495)
+.+++.+.+++....++.++|+|++..|... .+.|-. ..++..++.++++....... -|+..+.|++|..|
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~----aEl~s~~P~~GG~y--- 77 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVY----AELSTAYPENGADY--- 77 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCce---
Confidence 3556778999999999999999999999864 456643 23444555556555554444 56666666555433
Q ss_pred cccHHHHHHHhhchhhhhhhHhhhHH-HHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhh--hccCCCCcchhH
Q 011022 112 VIQWFEVLDGLLGKHWRNVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCAT--TVFIPSFHNYRI 188 (495)
Q Consensus 112 ~~~y~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~p--l~~l~~l~~l~~ 188 (495)
.| .++.+||...++....... ........+....++.+.++.+. +...+..+...+... ....+..+..++
T Consensus 78 --~y---~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~ln~~gv~~~~~ 151 (445)
T PRK11357 78 --VY---LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-DPLLGKFIAAGLIIAFMLLHLRSVEGGAA 151 (445)
T ss_pred --ee---HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 23 4567888877765554221 11111112222222222222221 111111111111111 122344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--hcCCC--CCCcc--CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHH
Q 011022 189 WSFLGLLMTTYTAWYLTIASL--LHGQV--EGVKH--AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAI 261 (495)
Q Consensus 189 ~s~~~~~~~~~~~~~i~~~~~--~~~~~--~~~~~--~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 261 (495)
+..+.....+...+++++..+ .++.. ++.+. ....++..++.++....|+|.|-.......+|+|||+| .+|+
T Consensus 152 v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~A 231 (445)
T PRK11357 152 FQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRA 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHH
Confidence 555444333321111222111 22211 01111 11122556777788899999999999999999999965 6999
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 011022 262 YLLATLYVMTLTLPSAAA 279 (495)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~ 279 (495)
+..++.++.++|++....
T Consensus 232 i~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 232 LIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999876553
No 43
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.12 E-value=6.2e-09 Score=106.33 Aligned_cols=350 Identities=11% Similarity=0.057 Sum_probs=190.6
Q ss_pred cccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 011022 33 NFFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLG--MLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRN 110 (495)
Q Consensus 33 ~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G--~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~ 110 (495)
.+.+|+.+.+.++..++++++|+|++.-|....+.+ ...+++.-++.++++......- -|+...-+++|.||.
T Consensus 8 ~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcy----aELGT~ipksGgd~a- 82 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCY----AELGTSIPKSGGDYA- 82 (479)
T ss_pred ccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH----HHHhccccCCCcchh-
Confidence 345677788999999999999999999998866544 4555666667777777775544 466666666665443
Q ss_pred ccccHHHHHHHhhchhhhhhhHhhhHHHHhHHH-HHHHHHhhhh-ccccccc-ccchhhHHHHHHHHhhhccCCCCcchh
Q 011022 111 HVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGS-VIQLIACASN-IYYINDN-LDKRTWTYIFGACCATTVFIPSFHNYR 187 (495)
Q Consensus 111 ~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~-v~y~i~~~~~-~~~~~~~-~~~~~~~~i~~~i~~pl~~l~~l~~l~ 187 (495)
-..++||+.........-.+...... .++-+..++. ++.+.+. ...+...-..+.+++.+....+..+.+
T Consensus 83 -------yi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~ 155 (479)
T KOG1287|consen 83 -------YISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVK 155 (479)
T ss_pred -------hHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 23456787776655444333333332 3344444443 3323321 112222222333333333344556666
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHh---hcCCCCCCc----cCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc
Q 011022 188 IWSFLGLLMTTY---TAWYLTIASL---LHGQVEGVK----HAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 257 (495)
Q Consensus 188 ~~s~~~~~~~~~---~~~~i~~~~~---~~~~~~~~~----~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~ 257 (495)
+.+.+-.+.++. +...+.+..+ ..|...+.+ .....+..++-.++=...|||.|=..+-.+.+|+|||+|
T Consensus 156 ~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k 235 (479)
T KOG1287|consen 156 WATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc
Confidence 665554444432 1212222222 233222221 112233445556667789999999999999999999965
Q ss_pred -hhHHHHHHHHHHHHHHHhHHHHHHHHhc-cccccccccccc-CCC---chHHHHHHHHHHHHHHHHHHhhh-ccHHHHH
Q 011022 258 -FKAIYLLATLYVMTLTLPSAAAVYWAFG-DMLLNHSNAFSL-LPR---SPFRDMAVILMLIHQFITFGFAC-TPLYFVW 330 (495)
Q Consensus 258 -~~~~~~~s~~~~~~~y~~~g~~gY~~fG-~~~~~~~~il~~-l~~---~~~~~i~~~~~~i~~~~sypl~~-~p~~~~~ 330 (495)
.++++..++.++++.|+++-+..+..-- |+.. +++.... +.+ +.+...+-++..++.+.+.--.+ ...|...
T Consensus 236 tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l-~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~ 314 (479)
T KOG1287|consen 236 TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEIL-SSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFY 314 (479)
T ss_pred cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhc-ccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 6999999999999999987654443221 1111 1111110 111 11222233333333333332211 2222222
Q ss_pred H--------HHhc-CCCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchhh
Q 011022 331 E--------KAIG-MHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSAA 398 (495)
Q Consensus 331 ~--------~~~~-~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~~ 398 (495)
. ..+. ++.++..+ .....+.....++..++.+++.+++.++=.-.....+.+=+++|+|.++++.
T Consensus 315 ~~areG~LP~~~s~i~~~~~TP---~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 315 AGAREGHLPAFFSMISVRRFTP---RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHccCccHHHHhhcCCCCCC---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 1 1121 11111111 1112233344455566778999999988777777788888999998887764
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.08 E-value=4.9e-07 Score=95.22 Aligned_cols=241 Identities=13% Similarity=0.072 Sum_probs=134.9
Q ss_pred cccccCCchHH-HHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 011022 33 NFFWHGGSVYD-AWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (495)
Q Consensus 33 ~~~~~~~s~~~-a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~ 111 (495)
+..+++.+.++ ...-....++|.|++.+|......+ ....+..++.+++........ .|+.++.++.|
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~----~el~~~~p~~G------ 76 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSY----AELSSAIPSAG------ 76 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCC------
Confidence 34445555676 7888888899999999998887776 222222333444444443333 45555554443
Q ss_pred cccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccccc---ccc--hhhHHHHHHHHhh--hccCCCCc
Q 011022 112 VIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---LDK--RTWTYIFGACCAT--TVFIPSFH 184 (495)
Q Consensus 112 ~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~---~~~--~~~~~i~~~i~~p--l~~l~~l~ 184 (495)
.+.+-.++.+||+..+.......+................+..+.+. ... ..+.++..+++.. +.-.+..|
T Consensus 77 --G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 77 --GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred --CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 45557788899877766655544443333222222222222222221 111 1222222222222 22234455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCccC--CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-ch
Q 011022 185 NYRIWSFLGLLMTTYTAWYLTIASLLHGQVE---GVKHA--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 258 (495)
Q Consensus 185 ~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~ 258 (495)
..+++..+..+..+...+.+.+..+...... ..... ....+..+..++....++|.|-..+....+|+|||+ +.
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 5555555444443332222222222222111 11111 122344677778889999999999999999999994 56
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 011022 259 KAIYLLATLYVMTLTLPSAAAVYWAFGD 286 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gY~~fG~ 286 (495)
+|.+..++..+.++|+...+......++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999999999887766666654
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.03 E-value=4e-07 Score=93.75 Aligned_cols=226 Identities=10% Similarity=0.014 Sum_probs=145.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVL-LTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~Gi-LsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++....+-.+.-+...||+|. ++.-.+++++|-...++..+++|.+.+..+.-|. |+....|.. -
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLG----Ema~~~P~s--------G 109 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLG----ELAVFYPVS--------G 109 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCC--------C
Confidence 44555577888899999999995 5689999999999889999999999888888775 444444322 2
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccc-cchhhHHHHHHHHhhhccC--CCCcchhH-H
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL-DKRTWTYIFGACCATTVFI--PSFHNYRI-W 189 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~-~~~~~~~i~~~i~~pl~~l--~~l~~l~~-~ 189 (495)
++...+.+..++-.+..+...-+.......-..++.++..++++.+.. +...|..++.++++.+-++ |...+..+ +
T Consensus 110 sF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~ 189 (541)
T COG0833 110 SFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 (541)
T ss_pred chhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence 577888888777777655443333333333344555556667776443 7778888887776665543 55555554 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC-----C---c--cCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-h
Q 011022 190 SFLGLLMTTYTAWYLTIASLLHGQVEG-----V---K--HAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (495)
Q Consensus 190 s~~~~~~~~~~~~~i~~~~~~~~~~~~-----~---~--~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~ 258 (495)
|.+=++.++. ++++...+.-|..++ . . ...+..+.++...+-+..|||.|...+---..|-+||+| .
T Consensus 190 s~iKV~~ii~--Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~i 267 (541)
T COG0833 190 SSIKVLTIIG--FIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSI 267 (541)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhh
Confidence 3333332221 111111111221111 1 1 122455788888888999999999999999999999976 4
Q ss_pred hHHHHHHHHHHHHHHH
Q 011022 259 KAIYLLATLYVMTLTL 274 (495)
Q Consensus 259 ~~~~~~s~~~~~~~y~ 274 (495)
+|+..-..-=+.++|+
T Consensus 268 PkAik~vfwRIl~FYi 283 (541)
T COG0833 268 PKAIKQVFWRILLFYI 283 (541)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6766555554555554
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.02 E-value=3.6e-06 Score=89.06 Aligned_cols=238 Identities=11% Similarity=-0.030 Sum_probs=119.4
Q ss_pred cccCCchHHHHHHHHHhh-hhhhhchHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQ-VAQVLLTLPYS-FSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~-iG~GiLsLP~a-f~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
++++.+.++.+..-.+.+ +|.|+.+.+.. ..++|- ..+...++.++...... .+.-|+..+.|.+|
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~a----ls~aEL~s~~P~aG------- 78 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVA----LNFAELAARYPISG------- 78 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHH----HHHHHHHhhCCCCC-------
Confidence 445566787777666664 89998886654 556665 33444444444444443 34467777776554
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhc-------ccc--cccc---cch--hhHHHHHH-HHhhh
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNI-------YYI--NDNL---DKR--TWTYIFGA-CCATT 177 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~-------~~~--~~~~---~~~--~~~~i~~~-i~~pl 177 (495)
....-.++.+||...++......+................+ ..+ .+.. +.. .+.+.... +..-+
T Consensus 79 -G~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
T TIGR03428 79 -AIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTV 157 (475)
T ss_pred -CHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHH
Confidence 33345677889888777665444332221111111111110 000 0111 111 11111111 11112
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CC--Ccc----CCCchHHHHHhhhhHHHHhhcccchhHHHHh
Q 011022 178 VFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQV-EG--VKH----AGPTKLVLYFTGATNILYTFGGHAVTVEIMH 250 (495)
Q Consensus 178 ~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~----~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~ 250 (495)
.-....|..+++..+.....+...+.+++........ +. .+. ..+.....+..+.....|+|.|-..+..+-+
T Consensus 158 in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ae 237 (475)
T TIGR03428 158 INCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSE 237 (475)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 2233455666655544433322111121111211111 11 111 1111123445555667899999999999999
Q ss_pred hccCCcc-hhHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 011022 251 AMWKPQK-FKAIYLLATLYVMTLTLPSAAAVYWAFG 285 (495)
Q Consensus 251 ~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gY~~fG 285 (495)
|+|||+| .+|.+..+..++.++|.++-+......+
T Consensus 238 E~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 238 ETKNPRRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999965 6899888888877766554443333334
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.92 E-value=7.2e-06 Score=87.24 Aligned_cols=229 Identities=11% Similarity=0.096 Sum_probs=119.2
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKER-EKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (495)
+++.+.++.....+++++|.+ .+|.++++.|.. +++..++.+++...+. .-+.-|+..+.|. +| .
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~---al~~aEL~s~~P~~aG--------G 71 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPF---ALMMAEYGSAFKDEKG--------G 71 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCC--------c
Confidence 567889999999999999976 679888888875 4555554444433221 2233466666653 23 3
Q ss_pred HHHHHHHhhchhhhhhhHhhhHH---HHh-HHH------HHHHHHhhhhccccc-ccccch-hhHHHHHHH--HhhhccC
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCT---FLL-FGS------VIQLIACASNIYYIN-DNLDKR-TWTYIFGAC--CATTVFI 180 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~---~~~-g~~------v~y~i~~~~~~~~~~-~~~~~~-~~~~i~~~i--~~pl~~l 180 (495)
-..-.++.+|++.+++....... ... ... ..+.+......+.+. ...+.. ...++.... .+-+...
T Consensus 72 ~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 72 IYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHc
Confidence 34466777888777654322111 111 110 111111110000000 001111 111111111 1222335
Q ss_pred CCCcchhHHHHHHHHHHHHHH--HHH--HHHHhhcCCC--CCCc-----c---CCCchHHHHHhhhhHHHHhhcccchhH
Q 011022 181 PSFHNYRIWSFLGLLMTTYTA--WYL--TIASLLHGQV--EGVK-----H---AGPTKLVLYFTGATNILYTFGGHAVTV 246 (495)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~--~~i--~~~~~~~~~~--~~~~-----~---~~~~~~~~~~~a~~~~~faf~~~~~i~ 246 (495)
+.++..++++.++....+... +++ .......+.. .+.. . ....+..+++.++....|+|.|...+.
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 566777776655443322111 111 1111112211 0110 0 011111345666777899999999999
Q ss_pred HHHhhccCCcc-hhHHHHHHHHHHHHHHHhHHH
Q 011022 247 EIMHAMWKPQK-FKAIYLLATLYVMTLTLPSAA 278 (495)
Q Consensus 247 ~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (495)
...+|+|||+| .+|++..+...+.++|+...+
T Consensus 232 ~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 232 GLVDKTENPEKNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHhccCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999964 799999999998998887543
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.85 E-value=1e-05 Score=85.84 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHHHHHHHHHHHHHHHhH
Q 011022 227 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAIYLLATLYVMTLTLPS 276 (495)
Q Consensus 227 ~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~ 276 (495)
.+..++....|+|.|-.......+|+|||+| .+|++..+..++.+++.+.
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHH
Confidence 3455555677999999999999999999965 6888888877766554433
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.80 E-value=6.3e-06 Score=87.74 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=39.0
Q ss_pred hhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHHHHHHHHHHhHH
Q 011022 231 GATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLATLYVMTLTLPSA 277 (495)
Q Consensus 231 a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~~~~~~~y~~~g 277 (495)
.+..++|+|.|-.......+|+|||+ +++|++..++.++.++|.+..
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 33456889999999999999999996 479999988888888887543
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.78 E-value=6.2e-08 Score=86.57 Aligned_cols=212 Identities=17% Similarity=0.137 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhhc-cc-----
Q 011022 42 YDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYV---------EYRTRKERE-KV----- 106 (495)
Q Consensus 42 ~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~---------~~~~~~~~~-~~----- 106 (495)
.-...-+.|-++|+|.|+||.||+.+||.+++.++.+.+++++.+....+++.. ++.++++.+ ..
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 344556778899999999999999999999999999999999988877766532 222222111 00
Q ss_pred --------ccc---------------------cccccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhh------
Q 011022 107 --------DFR---------------------NHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACA------ 151 (495)
Q Consensus 107 --------~~~---------------------~~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~------ 151 (495)
.|+ .+-...+|++...|.|.+-.+..+++++|++|...+|....-
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 010 001245677778899999999999999999998877754221
Q ss_pred -------hhcccc-c---cccc------------chhhHHHHHH-HHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 011022 152 -------SNIYYI-N---DNLD------------KRTWTYIFGA-CCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIA 207 (495)
Q Consensus 152 -------~~~~~~-~---~~~~------------~~~~~~i~~~-i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~ 207 (495)
+.+..- . ...+ .|.+..++.+ +.+|+.+. .+++-+++-++..++-.. +.. ...
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~-~~~-~g~ 251 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWA-AFI-LGI 251 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHH-hcc-chh
Confidence 111100 0 0101 1223334432 34455443 355555655555544322 111 111
Q ss_pred Hhh--c-CCCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc
Q 011022 208 SLL--H-GQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 256 (495)
Q Consensus 208 ~~~--~-~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~ 256 (495)
++. + .......+++...+-++-.-++...|+|.+|.+.|.....++.+.
T Consensus 252 ~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 252 SLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 111 1 111011111111222222223789999999999999888887653
No 51
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.78 E-value=1.6e-05 Score=84.01 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHhhcccchhHHHHhhccCCcc-hhHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 011022 234 NILYTFGGHAVTVEIMHAMWKPQK-FKAIYLLATLYVMTLTLPSAAAVYWAFG 285 (495)
Q Consensus 234 ~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gY~~fG 285 (495)
.+.|+|.|-..+....+|+|||+| .+|++..+..++.++|+...+.-....+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457899999999999999999964 7999999999999999876554433333
No 52
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.60 E-value=2.9e-06 Score=90.00 Aligned_cols=233 Identities=12% Similarity=0.069 Sum_probs=132.7
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLT-LPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKERE-KVDFRNH 111 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLs-LP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~-~~~~~~~ 111 (495)
+.++..+.++-.+.-+.++||+|++- ...+.++.|-..-++..+++|+.++.++. |.-|+..+.|+. |
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~----~~~E~~~~~P~~aG------ 96 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSAL----CLGEFAVRFPVSAG------ 96 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHH----HHHHHheecccccc------
Confidence 44455556777777889999999765 66778888877666777777766666644 446777777642 3
Q ss_pred cccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccc---------ccccchhhHHHHHHH--HhhhccC
Q 011022 112 VIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DNLDKRTWTYIFGAC--CATTVFI 180 (495)
Q Consensus 112 ~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~---------~~~~~~~~~~i~~~i--~~pl~~l 180 (495)
++..-+.+..|+-+.+++..-.++..+..+-.-....+..++++. +..+...|..++.++ ++.+.-.
T Consensus 97 --s~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 97 --SFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred --cceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 233344556666666655443333222222222222333333332 233334454443332 3333334
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCC------cc---CCCchHHHHHhhhhHHHHhhcccchhHH
Q 011022 181 PSFHNYRIWSFLGLLMTTYTAWYLTIASL----LHGQVEGV------KH---AGPTKLVLYFTGATNILYTFGGHAVTVE 247 (495)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~~~i~~~~~----~~~~~~~~------~~---~~~~~~~~~~~a~~~~~faf~~~~~i~~ 247 (495)
+..-+.+.....--+.+++.. +++.+.+ ..++..++ +. ..+..+.+++.++-+..|+|.|...+-.
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~-~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~ 253 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGF-IILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVAT 253 (554)
T ss_pred hhccceeehHHHHHHHHHHHH-HHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHH
Confidence 443444444333333222111 1111111 11111111 11 1233477888888999999999999999
Q ss_pred HHhhccCCcc-hhHHHHHHHHHHHHHHHhHHHH
Q 011022 248 IMHAMWKPQK-FKAIYLLATLYVMTLTLPSAAA 279 (495)
Q Consensus 248 i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~ 279 (495)
..+|-|||+| .+++...++..++.+|+...+.
T Consensus 254 ~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 254 TAEEAKNPRKAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999965 6889998999999999876553
No 53
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.55 E-value=2.1e-05 Score=81.19 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=38.8
Q ss_pred HHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAIYLLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
..+..++-.-++++.|-..-..+.+|-||+++ -++.+..+..+..++=..+-+.-..+-+++
T Consensus 252 ~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 252 WAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34455555667777788888999999999865 467666666665555333333233334543
No 54
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.50 E-value=2.2e-06 Score=90.83 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=128.8
Q ss_pred HHHhhhhhhhch-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhhchh
Q 011022 48 CSSNQVAQVLLT-LPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKH 126 (495)
Q Consensus 48 l~~~~iG~GiLs-LP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~G~~ 126 (495)
-+.+++|+|++. .+.+..++|....++..++.+++...++.-+.+ +.++.++.| ++....++.+|+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~e----ms~~~p~~G--------g~y~y~~~~lg~~ 73 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAE----MSRRFPSAG--------GFYAYASRGLGPA 73 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhh----hhhhhcccc--------chhhhhhhccCCc
Confidence 356778988654 778899999977778888888888887776654 444443333 5666778888988
Q ss_pred hhhhhHhhhHHHHhHHHHHHHHHhhhhcccc--ccccc-chhh----HHHHHHHHhhhccCCCCcchhHHHHHHHHHHHH
Q 011022 127 WRNVGLAFNCTFLLFGSVIQLIACASNIYYI--NDNLD-KRTW----TYIFGACCATTVFIPSFHNYRIWSFLGLLMTTY 199 (495)
Q Consensus 127 ~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~--~~~~~-~~~~----~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~ 199 (495)
.+.........+............+..++.+ .+... ...| ..++.+++..+. +...|..+.....-....+.
T Consensus 74 ~Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~ 152 (478)
T PF00324_consen 74 LGFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLI 152 (478)
T ss_pred CCceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhh
Confidence 8776665533333332222222233323332 22222 2323 233333333222 22334444433322221111
Q ss_pred HHHHHHHHH----hhcCCCCCC-------c--cC--------CCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-
Q 011022 200 TAWYLTIAS----LLHGQVEGV-------K--HA--------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (495)
Q Consensus 200 ~~~~i~~~~----~~~~~~~~~-------~--~~--------~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~- 257 (495)
..+.+++.. ...+.+.+. . .. ...++.+++.++....++|.|-..+...-+|.|||+|
T Consensus 153 ~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~ 232 (478)
T PF00324_consen 153 ALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKT 232 (478)
T ss_pred HhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhh
Confidence 111111111 111111111 0 00 1123678899999999999999999999999999975
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 011022 258 FKAIYLLATLYVMTLTLPSAAAVYWAFGD 286 (495)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gY~~fG~ 286 (495)
.+|....++..+.++|+......-...+.
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 58888889999999998776654445543
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.48 E-value=8.6e-05 Score=78.42 Aligned_cols=319 Identities=9% Similarity=-0.029 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHH
Q 011022 41 VYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLD 120 (495)
Q Consensus 41 ~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~ 120 (495)
|+...+++.+-.++.|.+++ ..++..+++.+++..++...-+-+..+. .. +++ .++.-++|
T Consensus 36 W~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~----G~-------~~G---l~~~v~sR 96 (484)
T PRK11375 36 WMGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAA----GS-------KYG---VPFAMILR 96 (484)
T ss_pred HHHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhccc----cc-------ccC---CChhHhHH
Confidence 44555555554455555532 3445555555554444433333333222 11 111 47888999
Q ss_pred HhhchhhhhhhHhhhH-HHHhHHHHHHHHHhhhhcc----cccc------------ccc--chhhHHHHHHHHhhhccCC
Q 011022 121 GLLGKHWRNVGLAFNC-TFLLFGSVIQLIACASNIY----YIND------------NLD--KRTWTYIFGACCATTVFIP 181 (495)
Q Consensus 121 ~~~G~~~~~~~~~~~~-~~~~g~~v~y~i~~~~~~~----~~~~------------~~~--~~~~~~i~~~i~~pl~~l~ 181 (495)
..||++|..+..++.. +..++-..++....++.+. .+.+ ..+ ...+.+++.++..++.+ .
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~ 175 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-G 175 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-c
Confidence 9999999776665542 2322322222222222111 1100 111 11222344455555543 4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCcc------CCCchHHHHHhhhhHHHHhhc-ccchhHHHHhhcc
Q 011022 182 SFHNYRIWSFLGLLMTTYTAWYLTIASLLH-GQVEGVKH------AGPTKLVLYFTGATNILYTFG-GHAVTVEIMHAMW 253 (495)
Q Consensus 182 ~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~------~~~~~~~~~~~a~~~~~faf~-~~~~i~~i~~~m~ 253 (495)
.++.++++..++........+.+.+..+.+ |..+-.+. ........+..++...+=++. .-.+.|...|..|
T Consensus 176 g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k 255 (484)
T PRK11375 176 GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAH 255 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccC
Confidence 567777777776665543332333333322 21111100 011123344444433333443 3447888999888
Q ss_pred CCcchhHHHHHHHHHHHHHHHhHHHHH----HHHhcccccccccccccCCCchHHHHHHHHHHHHHHHH-HHhhhccHHH
Q 011022 254 KPQKFKAIYLLATLYVMTLTLPSAAAV----YWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFIT-FGFACTPLYF 328 (495)
Q Consensus 254 ~p~~~~~~~~~s~~~~~~~y~~~g~~g----Y~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i~~~~s-ypl~~~p~~~ 328 (495)
++++-.+.-.++..+...+...+|++. ...||+..-|...++..+.+.....++.+.+.++...+ ......+.-.
T Consensus 256 ~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~ 335 (484)
T PRK11375 256 SFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGY 335 (484)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 887655544445544444433333332 45666654322223332221112222333333333333 2234455555
Q ss_pred HHHHHhcCCCcccchhhhhhhhhHHHHHHHHHH--hcCc---chhhHHhhhhhhhhhhHHh
Q 011022 329 VWEKAIGMHECKSLCKRAAARLPVVIPIWFLAI--VFPF---FGPINSTVGSLLVSFTVYI 384 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~--~ip~---~~~iislvGa~~~~~l~~i 384 (495)
.+..++.+ +. .++|..+ +.-++..+++. .+.+ |..++++.|++.+.....+
T Consensus 336 ~l~~l~pk--~i-~~~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 336 QIAALAPT--KL-TYKNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHHHhCcC--cc-chhhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555421 11 1222111 11111222221 1223 7777788777766655443
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.44 E-value=0.00022 Score=74.66 Aligned_cols=175 Identities=12% Similarity=-0.044 Sum_probs=93.3
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcc----ccccc---cc------chhhHHHHHHHHhhhccC
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIY----YINDN---LD------KRTWTYIFGACCATTVFI 180 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~----~~~~~---~~------~~~~~~i~~~i~~pl~~l 180 (495)
++.-++|..||++|..+..++..+..++-..+.....++.+. ...+. .+ ...+.+++..+.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 667789999999999988877777666665555555543332 11111 01 112333444555554455
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--CCc--cCCCchHHHHHhhhhHHH-HhhcccchhHHHHhhccC
Q 011022 181 PSFHNYRIWSFLGLLMTTYTAWYLTIASLLH-GQVE--GVK--HAGPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWK 254 (495)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~~~--~~~--~~~~~~~~~~~~a~~~~~-faf~~~~~i~~i~~~m~~ 254 (495)
...+-.+.....+....+....+++...... +..+ ... ...+.....+..+++..+ +.-..-.+.++..|.+|+
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 4445555555555443322111121111211 1111 111 122333455555555322 223455688999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHhHHHHHHHH----hcccc
Q 011022 255 PQKFKAIYLLATLYVMTLTLPSAAAVYWA----FGDML 288 (495)
Q Consensus 255 p~~~~~~~~~s~~~~~~~y~~~g~~gY~~----fG~~~ 288 (495)
+++-.+...+++.........+|..+-.. +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 87766656666666666666666666554 77654
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.34 E-value=0.00094 Score=68.57 Aligned_cols=257 Identities=13% Similarity=0.046 Sum_probs=135.6
Q ss_pred HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHH
Q 011022 116 FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLL 195 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~ 195 (495)
..++|..||.++.++..+.+...+.|-..+..+..++.... .+..+...+.++.++++...+.. ..|.+++++..++.
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-~~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~a~~ 161 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS-GTGLPVWAGILIIGVLMTLVTIF-GYRALHKLERIAVP 161 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc-CCCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 34778899999999999999999999988888887765322 24455666666666666555544 34555555555554
Q ss_pred HHHHHHHHHHHHHhh-cCCCCCCccCCCchHHHHHhhhhH-HHHhhcccchhHHHHhhccCCcc--hhHHHHHHHHHHHH
Q 011022 196 MTTYTAWYLTIASLL-HGQVEGVKHAGPTKLVLYFTGATN-ILYTFGGHAVTVEIMHAMWKPQK--FKAIYLLATLYVMT 271 (495)
Q Consensus 196 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~-~~faf~~~~~i~~i~~~m~~p~~--~~~~~~~s~~~~~~ 271 (495)
.......+.+..... ++.........+.++.++..+++. +.+.-..-....+..+-+|+|+. .-.....+......
T Consensus 162 ~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~ 241 (442)
T COG1457 162 LLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTS 241 (442)
T ss_pred HHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHH
Confidence 443322223222222 222122222335555666655553 22222455677888889998884 33344455555666
Q ss_pred HHHhHHHHHHHHhcccccccccccccCCCchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCcccchhhhhhhhh
Q 011022 272 LTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGMHECKSLCKRAAARLP 351 (495)
Q Consensus 272 ~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~ 351 (495)
+-.++|.+.-.+-|+... .......+.+ +...+.+...++.+.+=-....+.-..+.... ++.++..+.+...+
T Consensus 242 ~~~ilGa~~a~a~g~~~~-~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~---~~l~k~~~~v~~~v 315 (442)
T COG1457 242 FMMILGAALAAAAGNADS-IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANII---PKLSKVTRVVIAGV 315 (442)
T ss_pred HHHHHHHHHHHhcCCCch-HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhh---hhhhhHHHHHHHHH
Confidence 666778877777766431 1122222221 33333333333333332222222222222222 21223334333222
Q ss_pred HHHHHHHHHH----hcCcchhhHHhhhhhhhhhhH
Q 011022 352 VVIPIWFLAI----VFPFFGPINSTVGSLLVSFTV 382 (495)
Q Consensus 352 ~~~~~~~iA~----~ip~~~~iislvGa~~~~~l~ 382 (495)
. ...++|+ ++.+++.++.++|+.......
T Consensus 316 ~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~ 348 (442)
T COG1457 316 G--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGG 348 (442)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333 356788888887776644433
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.23 E-value=0.0012 Score=64.26 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhhhhhhch---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 42 YDAWFSCSSNQVAQVLLT---LPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 42 ~~a~~~l~~~~iG~GiLs---LP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
.+-.+-.+.+++|+|.=+ +=.-|..-|+. |...+++.+++-..++..+.+..++.+ ..+|.|+
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~-------------a~~y~~~ 71 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN-------------ATSYREI 71 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccchHHH
Confidence 344566677999999766 33345566777 667777778888888887766655543 2589999
Q ss_pred HHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhH--HHHHHHHhhhccCCCCcchhHHHH
Q 011022 119 LDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWT--YIFGACCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~--~i~~~i~~pl~~l~~l~~l~~~s~ 191 (495)
-+..+||+...+.+....+++++.+++-.--.+..++ ..++...|. ++....+..+.++++.+.+..+..
T Consensus 72 ~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~---e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 72 LKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLE---EMFGLPYWIGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH---HHhCccHHHHHHHHHHHHHHHHHHhcccceeeehe
Confidence 9999999999999999999999988665433333322 223333443 344444444455665565554443
No 59
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=0.019 Score=61.04 Aligned_cols=147 Identities=14% Similarity=0.046 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhhhh-hhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 40 SVYDAWFSCSSNQVA-QVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 40 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
..+-..+...-+.++ .-.+++|....+.|+....+.+... +........+.+-.+++.++ ++..|..|.
T Consensus 41 g~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~~---------~~~~T~~d~ 110 (493)
T COG0591 41 GPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAKA---------RGATTIPDF 110 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc---------cCCccHHHH
Confidence 455666666666666 6789999999999988544444321 33333333333322444422 456799999
Q ss_pred HHHhhc-hhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHH
Q 011022 119 LDGLLG-KHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMT 197 (495)
Q Consensus 119 ~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~ 197 (495)
-++.|| |+.|.+..++..++...-+..++...++.++.... .+...-.++...+++....+-.++...+...+=....
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im 189 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIM 189 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 999999 89999998888888888888888777766643333 4555444455556666677777888888776554433
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.07 E-value=0.0098 Score=61.65 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=87.1
Q ss_pred cCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 37 HGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
++.+++...+.+..+.+|++ .++.|....+.|+. +....+...+......++..+..+ | .+..|.
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~T~ 68 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI----N---------NGAYTM 68 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----H---------cCCCch
Confidence 45567788888888887774 78899888888864 222222222222223333322211 1 234699
Q ss_pred HHHHHHhhch-hhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHH
Q 011022 116 FEVLDGLLGK-HWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (495)
Q Consensus 116 ~dl~~~~~G~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~ 194 (495)
.|.-++.||+ ..+.+..+...++.+.....++...+..++.+. +.+.....++...+++....+-.++...+...+-.
T Consensus 69 ~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~-gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~ 147 (407)
T TIGR00813 69 PEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT-GLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQA 147 (407)
T ss_pred hHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 9999999998 466665555555565555555555555444322 34445455555556666677777888888777665
Q ss_pred HHHH
Q 011022 195 LMTT 198 (495)
Q Consensus 195 ~~~~ 198 (495)
+..+
T Consensus 148 ~i~~ 151 (407)
T TIGR00813 148 VIMI 151 (407)
T ss_pred HHHH
Confidence 5443
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.93 E-value=0.0082 Score=62.17 Aligned_cols=148 Identities=13% Similarity=0.097 Sum_probs=81.2
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.+|++ .++.|-...+.|+.. ....+...+........+.+- +++ .+..|
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~---~r~----------~~~~T 70 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPR---LRR----------SGAVT 70 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHH---HHH----------TT--S
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHh---hcc----------cchhh
Confidence 345668888888998888875 788998888989863 333333333333344444332 221 23469
Q ss_pred HHHHHHHhhchhh--hhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 115 WFEVLDGLLGKHW--RNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 115 y~dl~~~~~G~~~--~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
..|.-++.||+.. +.+..+...++.......++...+..++.+. ..+.....++...+.+.....-.++...+...+
T Consensus 71 ~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~i 149 (406)
T PF00474_consen 71 IPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFI 149 (406)
T ss_dssp HHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHTTCTT------SHHHH
T ss_pred hhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhcc-chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHH
Confidence 9999999999988 5555444444444444455555554444332 345565666666667777777778888877766
Q ss_pred HHHHHH
Q 011022 193 GLLMTT 198 (495)
Q Consensus 193 ~~~~~~ 198 (495)
-.+..+
T Consensus 150 Q~~i~~ 155 (406)
T PF00474_consen 150 QGVIMI 155 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 62
>PRK12488 acetate permease; Provisional
Probab=97.92 E-value=0.052 Score=58.52 Aligned_cols=147 Identities=15% Similarity=0.079 Sum_probs=88.9
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWT-AYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t-~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+++.+++...+.+..+.++++ .++.|....+.|+. +.... +...+.+.- ..++. .++++ ....
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a---~~lr~----------~g~~ 130 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIA---ERLRN----------LGKY 130 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHH---HHHHH----------CCCc
Confidence 456678888888998888876 68899888888875 22221 111112111 12222 22221 1235
Q ss_pred cHHHHHHHhhc-hhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 114 QWFEVLDGLLG-KHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 114 ~y~dl~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
|..|.-++-|| |+.|.+..+...+..+.-...++...+..++.+. +.+....+++...+++..+..--++...+...+
T Consensus 131 T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 131 TFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF-GISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred chHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88898888887 6677777666555555544555555554444332 345555556666667777778888888888776
Q ss_pred HHHHHH
Q 011022 193 GLLMTT 198 (495)
Q Consensus 193 ~~~~~~ 198 (495)
-.+..+
T Consensus 210 Q~~im~ 215 (549)
T PRK12488 210 KAVLLL 215 (549)
T ss_pred HHHHHH
Confidence 655443
No 63
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.89 E-value=0.011 Score=60.84 Aligned_cols=171 Identities=10% Similarity=0.066 Sum_probs=93.3
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhccccc----ccccchhhHHHHHHHHhhhccCCCCcchhH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNYRI 188 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~----~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~ 188 (495)
.++.-++|..||++|..+..+...+...+-..++....++.+..+. +..+...+.+++.++.++... ..++.+++
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~ 136 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVW 136 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3678899999999999888777666666655555544444433221 111223344444444554444 35677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhhHHH-HhhcccchhHHHHhhccCCcchhHHHHHHHH
Q 011022 189 WSFLGLLMTTYTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQKFKAIYLLATL 267 (495)
Q Consensus 189 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~ 267 (495)
+..++........+.+.+....+....+... .+.+ ..+..+++..+ +.-......++..|..|+|++--....++..
T Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~ 214 (386)
T TIGR02358 137 LNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYF 214 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHH
Confidence 7777766655433333333333321111111 1111 22222322211 1112334478888888888776666666777
Q ss_pred HHHHHHHhHHHHHHHHhcc
Q 011022 268 YVMTLTLPSAAAVYWAFGD 286 (495)
Q Consensus 268 ~~~~~y~~~g~~gY~~fG~ 286 (495)
+...+...+|...-.+.|+
T Consensus 215 i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 215 IGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7777777777766666554
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.88 E-value=0.054 Score=57.28 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=88.3
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.+|++ .++.|-...+.|+........ .....+.+..++.+-..+..+| .+..|
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~T 108 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRK---------YNAIT 108 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---------cCCcc
Confidence 445668889999999999886 778898888888742111111 0011122222222111111111 23469
Q ss_pred HHHHHHHhhchh-hhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 115 WFEVLDGLLGKH-WRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 115 y~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
..|.-++.||++ .+.+..+...++.++....++...+..++.+. +.+....+++..++++....+..++...+...+-
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ 187 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT-GLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQ 187 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999955 45666666655555555555444444443322 3455556666666677777777788888877766
Q ss_pred HHHHH
Q 011022 194 LLMTT 198 (495)
Q Consensus 194 ~~~~~ 198 (495)
.+..+
T Consensus 188 ~~v~~ 192 (471)
T TIGR02119 188 GIVMF 192 (471)
T ss_pred HHHHH
Confidence 55444
No 65
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.78 E-value=0.082 Score=56.39 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=82.5
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLG-SWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls-~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+++.+++-..+.+..+.+++. .++.|....+.|+..- ...+...+. .....++..-.+...++ +.+..
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~ 108 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHTEY--------NNNAL 108 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCce
Confidence 556778888888888888876 6789998888997531 111111122 11222221111111111 12346
Q ss_pred cHHHHHHHhhchhhhh---hhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHH
Q 011022 114 QWFEVLDGLLGKHWRN---VGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~---~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s 190 (495)
|..|.-++-||++.+. +..++..++.......++...+..++.+. +.+....+++...+.+..+.+--++...+.-
T Consensus 109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF-GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8889989999865443 33333333333322333333333333222 2455555566666777777777788888877
Q ss_pred HHHHHHHH
Q 011022 191 FLGLLMTT 198 (495)
Q Consensus 191 ~~~~~~~~ 198 (495)
.+-.+..+
T Consensus 188 ~iQ~~imi 195 (502)
T PRK15419 188 TVQASLMI 195 (502)
T ss_pred HHHHHHHH
Confidence 76655443
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.77 E-value=0.081 Score=56.16 Aligned_cols=152 Identities=10% Similarity=0.004 Sum_probs=82.7
Q ss_pred ccCCchHHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQ-VLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~-GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.+|+ ..++.|....+.|+......+. .....+.+..++..-..+..+| .+..|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~---------~~~~T 109 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMI-QVPTVWLSLGILGKKFAILARK---------YNAVT 109 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---------cCCcc
Confidence 34456778888888877776 5788887777778742111111 0111112222222211122122 23469
Q ss_pred HHHHHHHhhchhh-hhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 115 WFEVLDGLLGKHW-RNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 115 y~dl~~~~~G~~~-~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
..|.-++.||++. +.+..+...+..+.....++...+..++.+. +.+....+++..++++..+.+..++...+...+-
T Consensus 110 ~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ 188 (483)
T PRK09442 110 LNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT-GISYETGLLIFGITVALYTAFGGFRAVVLTDALQ 188 (483)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999998654 4444444444444444444444444433322 3455555566666667777777788888877666
Q ss_pred HHHHH
Q 011022 194 LLMTT 198 (495)
Q Consensus 194 ~~~~~ 198 (495)
.+..+
T Consensus 189 ~~i~~ 193 (483)
T PRK09442 189 GIVML 193 (483)
T ss_pred HHHHH
Confidence 55433
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=97.74 E-value=0.019 Score=59.45 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=84.1
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
.++.-++|..||++|..+..+...+..++-..++....+..+....+ .+...+.+++.++..+..+.. .+.++++...
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~ 148 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDINLLIVLSGLLMTVTAYFG-ISALTILSRI 148 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 47888999999999999887766665555444443333333222211 233335555556655555442 4555555555
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCCCCCccCCCchHHHHHhhhhHHH-HhhcccchhHHHHhhccCCcchhHHHHHHHHHHH
Q 011022 193 GLLMTTYTAWYLTIASLLH-GQVEGVKHAGPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVM 270 (495)
Q Consensus 193 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~ 270 (495)
+........+...+..+.+ +...+.....+.+...+..++...+ .--..-.+.++..|..|++++--.....+..+..
T Consensus 149 ~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~ 228 (404)
T PRK11017 149 AVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGN 228 (404)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHH
Confidence 5443332222222222221 1111111111111223444444322 2223456788888888887653333334444444
Q ss_pred HHHHhHHHHHHHHhcc
Q 011022 271 TLTLPSAAAVYWAFGD 286 (495)
Q Consensus 271 ~~y~~~g~~gY~~fG~ 286 (495)
.+...+|...-...|+
T Consensus 229 ~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 229 SLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4445555554445554
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.67 E-value=0.13 Score=55.56 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=81.8
Q ss_pred ccCCchHHHHHHHHHhhhhh-hhchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQ-VLLTLPYSFSQLGMLSGILFQLFYGLLGS-WTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~-GiLsLP~af~~~G~~~g~i~lv~~~~ls~-~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+++.+++...+.+..+.+++ ..++.|....+.|+- +....+ ...+.+ ....++.+ ++++ ....
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~---~lrr----------~g~~ 130 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAE---RLRN----------LGRY 130 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHH---HHHH----------cCCc
Confidence 45566787777888887765 588999888888875 322221 111121 11222222 2211 1135
Q ss_pred cHHHHHHHhhc-hhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 114 QWFEVLDGLLG-KHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 114 ~y~dl~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
|..|.-++-|| |..|.+..+...+..+.....++...+..++.+. +.+....+++...+++..+.+-.++...+...+
T Consensus 131 T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 131 TFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF-GLNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred cHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88998888886 5566665544444433333344444444443332 345554555666667777777778888877765
Q ss_pred HHHHH
Q 011022 193 GLLMT 197 (495)
Q Consensus 193 ~~~~~ 197 (495)
=.+..
T Consensus 210 Q~~im 214 (549)
T TIGR02711 210 KAVLL 214 (549)
T ss_pred HHHHH
Confidence 54443
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.65 E-value=0.069 Score=55.10 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=92.1
Q ss_pred CCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH-
Q 011022 38 GGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW- 115 (495)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y- 115 (495)
+.|.+|+.+..+.+.+|+| ++++|.|.+..| ..+++.+.+.+++..-+.+.-.....+++++.+ + .+|
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~--------g~~~ 115 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-D--------GVFR 115 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-C--------CCEe
Confidence 4889999999999999998 999999977666 668889988888888887777777677764321 1 124
Q ss_pred ----HHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcc-cccccccchhhHH-HHHHHHhhhccCCCCcchhHH
Q 011022 116 ----FEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIY-YINDNLDKRTWTY-IFGACCATTVFIPSFHNYRIW 189 (495)
Q Consensus 116 ----~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~-~~~~~~~~~~~~~-i~~~i~~pl~~l~~l~~l~~~ 189 (495)
..+-+...|||...+..++...++...+..+.-...+.++ .+ +...|.. +...++.-+.....+|++..+
T Consensus 116 GGP~yyi~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~----~~~~~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 116 GGPMYYIKKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAF----NVPKLVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred cChHHHHHHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 5677777788877666655333433233444333333333 12 1122332 222233333445667888777
Q ss_pred HHHHHHH
Q 011022 190 SFLGLLM 196 (495)
Q Consensus 190 s~~~~~~ 196 (495)
+-.-+..
T Consensus 192 ~~~lvP~ 198 (425)
T TIGR00835 192 SSVVVPF 198 (425)
T ss_pred HHHHHHH
Confidence 7655544
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.62 E-value=0.13 Score=54.52 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=80.6
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhcccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRT-RKEREKVDFRNHVI 113 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~-~~~~~~~~~~~~~~ 113 (495)
+++.+++-..+.+..+.+++. .++.|....+.|+.. ....+...+........+.+-.+++.+ | .+..
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~---------~~~~ 104 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAA---------HNSI 104 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------cCCc
Confidence 445667888888888777764 677897777888863 222222222222333334332233322 1 2346
Q ss_pred cHHHHHHHhhchhhhhh---hHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHH
Q 011022 114 QWFEVLDGLLGKHWRNV---GLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~---~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s 190 (495)
|..|.-++-||+..+.+ ..++..+.........+...+..++.+. +.+.....++...+.+..+..-.++...+..
T Consensus 105 T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~-gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 105 TLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF-GLDYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred cHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88999999999654433 3333332222222223233333333221 2444445555556666666777778887777
Q ss_pred HHHHHHHH
Q 011022 191 FLGLLMTT 198 (495)
Q Consensus 191 ~~~~~~~~ 198 (495)
.+-.+..+
T Consensus 184 ~iQ~~i~~ 191 (487)
T TIGR02121 184 FVQGLLMF 191 (487)
T ss_pred HHHHHHHH
Confidence 66554443
No 71
>PRK09395 actP acetate permease; Provisional
Probab=97.37 E-value=0.31 Score=52.64 Aligned_cols=146 Identities=11% Similarity=0.099 Sum_probs=85.1
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGS-WTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~-~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
+++.+++...+.+..+.++++ .++.|-.....|+.. ....+ ...+.+ ....++. .++++ .+..
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~-~~~~g~~~~~~~~~---~~~r~----------~g~~ 132 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSI-GFLVGWPIILFLIA---ERLRN----------LGKY 132 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHH---HHHhh----------CCCc
Confidence 445667888888888888764 788998888889753 22222 111221 1122222 22221 1236
Q ss_pred cHHHHHHHhhc-hhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHH
Q 011022 114 QWFEVLDGLLG-KHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (495)
Q Consensus 114 ~y~dl~~~~~G-~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~ 192 (495)
|+.|.-++-|| |..|.+..+...+..+.....++...+..++.+. +.+....+++..++++..+..--++...+...+
T Consensus 133 T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~-gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 133 TFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF-GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred cHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 89999998888 5577776655444444433444444444443332 345555566666667777777778888777765
Q ss_pred HHHHH
Q 011022 193 GLLMT 197 (495)
Q Consensus 193 ~~~~~ 197 (495)
-.+..
T Consensus 212 Q~iim 216 (551)
T PRK09395 212 KAVLL 216 (551)
T ss_pred HHHHH
Confidence 54443
No 72
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.26 Score=51.23 Aligned_cols=279 Identities=11% Similarity=0.064 Sum_probs=127.8
Q ss_pred ccHHHHHHHhhchhhhhh---hHhhhHHHHhHHH------HHHHHHhh--hhcccccc-----cccchhh--HHHHHHHH
Q 011022 113 IQWFEVLDGLLGKHWRNV---GLAFNCTFLLFGS------VIQLIACA--SNIYYIND-----NLDKRTW--TYIFGACC 174 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~---~~~~~~~~~~g~~------v~y~i~~~--~~~~~~~~-----~~~~~~~--~~i~~~i~ 174 (495)
..|..+.|..||-+|..+ .+.+..+.-+|.. .+.+++.. ......+. ..+...+ -+++-++.
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 489999999998877653 4444444444432 11111110 00010111 1111122 22333334
Q ss_pred hhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhc--CCCC--CCc---cCCCchHHHHHhhhhHHHHhh-cccchhH
Q 011022 175 ATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLH--GQVE--GVK---HAGPTKLVLYFTGATNILYTF-GGHAVTV 246 (495)
Q Consensus 175 ~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~--~~~~--~~~---~~~~~~~~~~~~a~~~~~faf-~~~~~i~ 246 (495)
++ +..+.+++++++-..+...+.+.+..+++..+.+ |..+ +.+ ...+..+.-++.++...+=-| ...-++|
T Consensus 183 ~l-~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 183 LL-VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HH-HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 43 3445677888777666666555444444444432 2111 111 122333334443333222222 2445788
Q ss_pred HHHhhccCCcchhH----HHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCCCchHHH-HHHHHHHHHH-HHHHH
Q 011022 247 EIMHAMWKPQKFKA----IYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLPRSPFRD-MAVILMLIHQ-FITFG 320 (495)
Q Consensus 247 ~i~~~m~~p~~~~~----~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~~~~~~~-i~~~~~~i~~-~~syp 320 (495)
..-|.-|+|+.-.. .+-..+.+...+=+.++...+..||+..-|.-+++.++.+..... ++-+.+++.. -+...
T Consensus 262 DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~ 341 (497)
T COG1953 262 DFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIA 341 (497)
T ss_pred hhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHH
Confidence 88888888754322 223333333344445566689999998766567777777654443 3333333322 22233
Q ss_pred hhhccHHHHHHHHhcCCCcccchhhhhh---hhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhchh
Q 011022 321 FACTPLYFVWEKAIGMHECKSLCKRAAA---RLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKSA 397 (495)
Q Consensus 321 l~~~p~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~~ 397 (495)
-..++.-..+..++ ++.-+ ++|-.. -+.+.++++-+=.--..+..+++..|++.+.....++ .=|+..+|++
T Consensus 342 aN~vsp~~D~s~l~--Pk~in-~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi--aDyflirk~~ 416 (497)
T COG1953 342 ANIVSPGYDLSALF--PKYIN-IKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI--ADYFLVRKGR 416 (497)
T ss_pred hccCChHHHHHHhc--ccccc-hhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCc
Confidence 33443333333333 22111 222111 1111111221111123466667766777777665443 2244455544
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.18 E-value=0.49 Score=51.13 Aligned_cols=146 Identities=8% Similarity=-0.071 Sum_probs=80.5
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.++++ .++.|....+.|+..-... ....+.......++.+-.++ .+..|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr-------------~~~~T 96 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRK-------------FGKYT 96 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHH-------------CCCcc
Confidence 456778888899998888764 7889987777887421111 11111111222333322221 12358
Q ss_pred HHHHHHHhhchh-hhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 115 WFEVLDGLLGKH-WRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 115 y~dl~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
..|.-++.||++ .+.+..+...+..+.....++...+..++.+. +.+....+++..++++..+.+--++...+.-.+-
T Consensus 97 ~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~-gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 97 VPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL-EVDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888888754 56655544444444333333333333333222 2445555555666666666777777777766655
Q ss_pred HHH
Q 011022 194 LLM 196 (495)
Q Consensus 194 ~~~ 196 (495)
.+.
T Consensus 176 ~ii 178 (552)
T TIGR03648 176 YIV 178 (552)
T ss_pred HHH
Confidence 443
No 74
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.94 E-value=0.028 Score=58.81 Aligned_cols=168 Identities=6% Similarity=-0.117 Sum_probs=74.3
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccc--------------cchh--hHHHHHHHHhhh
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--------------DKRT--WTYIFGACCATT 177 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~--------------~~~~--~~~i~~~i~~pl 177 (495)
++.-++|..||++|..+..+...+...|-..+.....++.+..+.... .... +.+++.++..+.
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 151 (440)
T PF02133_consen 72 PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF 151 (440)
T ss_dssp -HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH
T ss_pred CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 677788999999999988887777776665555555555443221110 0111 112222222222
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCcc-CCCchHHHHHhhhhHHHHhh-cccchhHHHHhhccC
Q 011022 178 VFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLLHGQV-EGVKH-AGPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWK 254 (495)
Q Consensus 178 ~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~a~~~~~faf-~~~~~i~~i~~~m~~ 254 (495)
-...++.++++..+.........+........+... +..+. ..+.....+..++...+-.+ ..-.+.++..+.+|+
T Consensus 152 -~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 152 -AIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp -HCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred -HhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 223355555555544443322221222222221111 11111 01111012333332222111 122345688999998
Q ss_pred CcchhHHHHHHHHHHHHHHHhHHHHHHH
Q 011022 255 PQKFKAIYLLATLYVMTLTLPSAAAVYW 282 (495)
Q Consensus 255 p~~~~~~~~~s~~~~~~~y~~~g~~gY~ 282 (495)
+++-.+...++..........+|++|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 231 DTSAWWGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeehhhhHHHHHHHHHHHHHH
Confidence 8776666666666555555555555443
No 75
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.69 E-value=0.89 Score=46.42 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=42.6
Q ss_pred HHHHhhhhhhhchHHHHH-HhhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHHhh
Q 011022 47 SCSSNQVAQVLLTLPYSF-SQLG--MLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLL 123 (495)
Q Consensus 47 ~l~~~~iG~GiLsLP~af-~~~G--~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~~~~~ 123 (495)
.+..-.+|+|.|-.|-.. +++| |..+.+..++.++..-.-+.+- ..+ . + .+|.++.++.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~a------v~~----~-----g--G~~~~l~~~~- 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIA------LAL----V-----G--GGYDSLSARI- 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhe------eee----c-----C--CCHHHHHHHh-
Confidence 456677999999988664 3454 6777777777666665544331 110 0 1 2688888876
Q ss_pred chhhhhhhHh
Q 011022 124 GKHWRNVGLA 133 (495)
Q Consensus 124 G~~~~~~~~~ 133 (495)
||+...+..+
T Consensus 65 g~~f~~lf~~ 74 (378)
T TIGR00796 65 GKVFGILFTV 74 (378)
T ss_pred ChHHHHHHHH
Confidence 5666655443
No 76
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.50 E-value=0.26 Score=49.35 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=110.2
Q ss_pred CchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 39 GSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 39 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
.+.+..+-|=..++-|+|-+-=|-.-.+-||+++.+.+++-+++.----.... . ..+-| ++-+|.+|+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~s-l--~~SvR---------~~G~Si~~i 119 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGS-L--MASVR---------HKGKSIGEI 119 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHH-H--hhhhc---------CCCccHHHH
Confidence 45678888999999999988888888999999999998875555422211111 0 11111 223699999
Q ss_pred HHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHHHHHHH
Q 011022 119 LDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTT 198 (495)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~ 198 (495)
+++..||+++.++.++..+.+.....++....++.+... +......+..+...+.+-+...|.--++...+.+++...+
T Consensus 120 ~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~-p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll~ 198 (376)
T PF02554_consen 120 AGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNS-PWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLLL 198 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHHH
Confidence 999999999999998888887777666655555443321 1111112222222223323333333445555555544322
Q ss_pred HHHHHHHHHHhhcCCCCCCccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcch
Q 011022 199 YTAWYLTIASLLHGQVEGVKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF 258 (495)
Q Consensus 199 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~~ 258 (495)
.++.-|..-+........| -.+++.|..-..+.|+-.=+. |+++
T Consensus 199 --------~~v~~G~~~p~~~~~~~~W-------~~ii~~Y~~iAs~lPVw~Llq-prdy 242 (376)
T PF02554_consen 199 --------LAVWLGMYFPISLLSVTTW-------IIIIFIYYFIASVLPVWKLLQ-PRDY 242 (376)
T ss_pred --------HHHHhhhhcccccCcHHHH-------HHHHHHHHHHHHHhhHHHHhC-chHH
Confidence 2222232111111111111 236777777788888876555 5444
No 77
>PRK10484 putative transporter; Provisional
Probab=96.23 E-value=2.2 Score=45.75 Aligned_cols=85 Identities=12% Similarity=-0.057 Sum_probs=50.5
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++-..+.+..+.++++ .++.|....+.|+... .......+.......++. .++++ .+..|
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~---p~~~r----------~~~~T 102 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFL---PRYLK----------SGITT 102 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHH---HHHHh----------cCCcc
Confidence 455668888888888877775 7789988777886532 111111111112222222 12221 23468
Q ss_pred HHHHHHHhhchhhhhhhHhh
Q 011022 115 WFEVLDGLLGKHWRNVGLAF 134 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~ 134 (495)
..|.-++.||++.+.+...+
T Consensus 103 ~~e~l~~Ryg~~~~~~~~~~ 122 (523)
T PRK10484 103 IPDFLEERYDKTTRRIVSIL 122 (523)
T ss_pred HHHHHHHhcCchhHHHHHHH
Confidence 99999999998877665544
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.59 E-value=3.1 Score=42.26 Aligned_cols=78 Identities=8% Similarity=0.100 Sum_probs=45.3
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhcc--CCCCcchhHHHH
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF--IPSFHNYRIWSF 191 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--l~~l~~l~~~s~ 191 (495)
+..|..++.+||+..+...+...+.............+..++.+. ..+...+.++..+..+.+.+ .++.|.+..+..
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIPLWIWVLLVAVIAILLLWLSSGGYRRLERILK 121 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 677888888899888776554444444433333333333333333 45566676666665555555 566677766554
Q ss_pred H
Q 011022 192 L 192 (495)
Q Consensus 192 ~ 192 (495)
.
T Consensus 122 ~ 122 (358)
T PF01566_consen 122 V 122 (358)
T ss_pred H
Confidence 3
No 79
>PRK15015 carbon starvation protein A; Provisional
Probab=95.02 E-value=0.98 Score=48.51 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=67.8
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVL 119 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl~ 119 (495)
+.+--+-|=..++-|+|-+-=|..-.|.||.++.+.+++-+++.----....- -.+.| ++-+|.+|++
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L---~~S~R---------~~GrSig~ia 151 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVL---FVSTR---------RDGRSLGELV 151 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhe---eeeec---------CCCccHHHHH
Confidence 34556678889999999999999888999999999988755443211111110 00111 2336999999
Q ss_pred HHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhh
Q 011022 120 DGLLGKHWRNVGLAFNCTFLLFGSVIQLIACAS 152 (495)
Q Consensus 120 ~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~ 152 (495)
++..||+++.+..+...+.+.....++...+.+
T Consensus 152 ~~~iG~~~~~lfli~i~~iliiviAvfalvvv~ 184 (701)
T PRK15015 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVK 184 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776666555544444333333
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.95 E-value=5.4 Score=41.36 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHh-hC--hhHHHHHHHHHHHHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQ-LG--MLSGILFQLFYGLLGSW 85 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~-~G--~~~g~i~lv~~~~ls~~ 85 (495)
..+...+.+.....|+|=|=.|-..-+ +| |+++.+.+++.++.-=.
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~ 52 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPL 52 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999876544 44 88888888777665433
No 81
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.87 E-value=5.5 Score=41.10 Aligned_cols=148 Identities=19% Similarity=0.129 Sum_probs=81.0
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.|.+||+..-+.+.+|+| +.+...|..-.| ..+++++.+.+++..-+-+.=.....+++++.+ +| +|.. .
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~-~G-~~~G---G 89 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDE-DG-EYRG---G 89 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECC-CC-CEee---c
Confidence 446889999999999999999 667999986555 558999998888887776644444456655432 11 1211 1
Q ss_pred HHHHHHHhhc-hhhhhhhHhhh-HHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHH
Q 011022 115 WFEVLDGLLG-KHWRNVGLAFN-CTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 115 y~dl~~~~~G-~~~~~~~~~~~-~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~ 191 (495)
-.-..++.+| ||...+..++. ..+..+.+.++.-.+.+.++.-. ..+.. ..-+...++.-+..+..+|++..++-
T Consensus 90 P~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f-~i~~~-~~gi~l~~l~~~vi~GGikrI~~v~~ 166 (416)
T PF01235_consen 90 PMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAF-GIPPW-ITGIILAILVALVIFGGIKRIAKVSE 166 (416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc-cccHH-HHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 1122344444 44444444331 22222223444433343333111 12222 22233333444556666777777664
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.14 E-value=1.7 Score=45.70 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011022 38 GGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (495)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~d 117 (495)
.++.+..+-|=..++-|+|-+-=|---+|.||.+|.+.+++-+++.----..++ ...+.| ++-+|.+|
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~---L~~SvR---------~~G~Si~~ 118 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFS---LMLSVR---------HGGKSIGE 118 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhh---eeeeec---------cCCccHHH
Confidence 355677888889999999999999999999999999998875555422211221 011111 22369999
Q ss_pred HHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhh
Q 011022 118 VLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACA 151 (495)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~ 151 (495)
++++.+|+..+.+..+...+.......+......
T Consensus 119 ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~ 152 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIA 152 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876655554444433333333
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=92.50 E-value=15 Score=38.22 Aligned_cols=166 Identities=8% Similarity=0.013 Sum_probs=81.0
Q ss_pred ccHHHHHH-HhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHH
Q 011022 113 IQWFEVLD-GLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 113 ~~y~dl~~-~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~ 191 (495)
.+..|... +.--+..|++..+.-.+-.+.-.+.+++-.+..+..+. ..+..+-.++-+++++..+.+-.++..+|.-.
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~-gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi 182 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL-GVPYHVGVVIGGILMMVYVVLGGMKATTWVQI 182 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCCceeehhhHhHHHHHHHHhcchhhhhHHHH
Confidence 47888654 44445666655433332222223344444443333222 23444455566677777778888889888776
Q ss_pred HHHHHHHHHHHHHH-HHHhh-cCCC-----------C--C--C--cc-CCCchHHHHHhhhhHHHHh-hcccchhHHHH-
Q 011022 192 LGLLMTTYTAWYLT-IASLL-HGQV-----------E--G--V--KH-AGPTKLVLYFTGATNILYT-FGGHAVTVEIM- 249 (495)
Q Consensus 192 ~~~~~~~~~~~~i~-~~~~~-~~~~-----------~--~--~--~~-~~~~~~~~~~~a~~~~~fa-f~~~~~i~~i~- 249 (495)
+-.+..+....+.. ..... .+.+ + + . ++ ....++.+++ + ..|+ ..|..-+|.+.
T Consensus 183 ~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~i---s-l~~aLm~GTAgLPHil~ 258 (529)
T COG4147 183 IQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFI---S-LGFALMVGTAGLPHILM 258 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHH---H-HHHHHHHccCCCCeEEE
Confidence 65443332211111 11111 1111 0 0 0 00 0122333433 2 1122 12444444432
Q ss_pred hhc--cCCcchhHHHHHHHHHHHHHHHhHHHHHHHH
Q 011022 250 HAM--WKPQKFKAIYLLATLYVMTLTLPSAAAVYWA 283 (495)
Q Consensus 250 ~~m--~~p~~~~~~~~~s~~~~~~~y~~~g~~gY~~ 283 (495)
|-. .+-|+-|++..++..++..+|+..-..|+.+
T Consensus 259 RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 259 RFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 212 2224567889999999999998776665543
No 84
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=91.96 E-value=2.8 Score=43.12 Aligned_cols=153 Identities=16% Similarity=0.084 Sum_probs=83.7
Q ss_pred ccccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~ 112 (495)
..+++.|.+|+.+.-+.+.+|+| +-+...|.+-.| ...++++-+.+++..-|.+.=.-...++++|.+ ..+|+..-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~--~G~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDK--DGEYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC--CCCCcCCh
Confidence 44567889999999999999999 566999987555 448888888888877766543333445554432 11222111
Q ss_pred ccHHHHHHHhh-chhhhhhhHhhhHHHHhH--HHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHH
Q 011022 113 IQWFEVLDGLL-GKHWRNVGLAFNCTFLLF--GSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIW 189 (495)
Q Consensus 113 ~~y~dl~~~~~-G~~~~~~~~~~~~~~~~g--~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~ 189 (495)
..|-| +-+ .||...+.. +..+..+| .+.++.-.+.+.++.-. +.+.. .+-+.+.++.-+..+..+|+++.+
T Consensus 135 ~yYi~---kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af-~~~~~-~~gi~la~l~~~VI~GGi~rIa~v 208 (452)
T COG1115 135 AYYIE---KGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAF-GIPPL-VTGIVLALLVALVIFGGIKRIAKV 208 (452)
T ss_pred HHHHH---hhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhc-CCcHH-HHHHHHHHHHHHHHHcchHHHHHH
Confidence 12222 222 344444444 22222233 44555445554443211 11222 222223334444566777787777
Q ss_pred HHHHHH
Q 011022 190 SFLGLL 195 (495)
Q Consensus 190 s~~~~~ 195 (495)
+-.-+.
T Consensus 209 ~~~vVP 214 (452)
T COG1115 209 SSKVVP 214 (452)
T ss_pred HHHHHH
Confidence 654443
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=90.96 E-value=23 Score=37.12 Aligned_cols=22 Identities=0% Similarity=-0.348 Sum_probs=16.7
Q ss_pred ccHHHHHHHhhchhhhhhhHhh
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAF 134 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~ 134 (495)
++..|+.++.+||+..++..+.
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~ 115 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQ 115 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHH
Confidence 3788999999999887765433
No 86
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=88.89 E-value=4.7 Score=41.24 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=53.2
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccC
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l 180 (495)
.-..+++++.+|+.|..+..+...+.++..++.....+++.++.+.+..+.+.|.++..++...++..
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~~ 322 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVANL 322 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999988888887776644466777777666665554443
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=87.61 E-value=38 Score=35.14 Aligned_cols=208 Identities=11% Similarity=0.094 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011022 39 GSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (495)
Q Consensus 39 ~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~d 117 (495)
.|...-++..+.+.+|.| +--.||-..+.|=..-++..++..++.-+-+ ++.+-.. .++.+ . +.+.+|.+
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPl-li~Ef~i--Gr~~~-~-----~~~~a~~~ 79 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPL-LLAEFAI--GRRGR-K-----NAVGAFRK 79 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHH-HHHHHHh--hhhcC-C-----ChhHHHHH
Confidence 456677778888999998 7779999888775533333333222222332 3332211 11111 0 22357777
Q ss_pred HHHHhhchhhhhh----h--H-hhhHHHH--hHHHHHHHHHhhh-h----ccc----ccccccchh----hHHHHHHHHh
Q 011022 118 VLDGLLGKHWRNV----G--L-AFNCTFL--LFGSVIQLIACAS-N----IYY----INDNLDKRT----WTYIFGACCA 175 (495)
Q Consensus 118 l~~~~~G~~~~~~----~--~-~~~~~~~--~g~~v~y~i~~~~-~----~~~----~~~~~~~~~----~~~i~~~i~~ 175 (495)
+.+ +|+++++ + . +....|. .|-...|...... . .+. +....+... +.+++.++ .
T Consensus 80 l~~---~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l-t 155 (439)
T COG0733 80 LAP---KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVL-T 155 (439)
T ss_pred hcc---CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHH-H
Confidence 776 3333322 1 1 1122222 2223455443221 1 110 111111111 21222111 1
Q ss_pred hhccCCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhc-CC--------CCCCccCCCchHHHHHhhhhHHHHhhc-ccch
Q 011022 176 TTVFIPSF-HNYRIWSFLGLLMTTYTAWYLTIASLLH-GQ--------VEGVKHAGPTKLVLYFTGATNILYTFG-GHAV 244 (495)
Q Consensus 176 pl~~l~~l-~~l~~~s~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~~~~~~~~~~~~~a~~~~~faf~-~~~~ 244 (495)
.+...+.. +.+.+.|.+-+...++..+.++++++.. |. .||++. -.+......|+|...|+-. |-+.
T Consensus 156 ~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~--l~~~~v~~~AlGQ~FFsLSlG~g~ 233 (439)
T COG0733 156 ALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSK--LTDPKVWLAALGQAFFSLSLGFGI 233 (439)
T ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHH--cCchhhHHHHHHHHHHHHHHHHHH
Confidence 12223333 3477777766665554444555555532 21 122222 2234556778898888875 6677
Q ss_pred hHHHHhhccCCcchhHH
Q 011022 245 TVEIMHAMWKPQKFKAI 261 (495)
Q Consensus 245 i~~i~~~m~~p~~~~~~ 261 (495)
+.+.-+.++++++..+.
T Consensus 234 mitYsSYL~k~~~l~~s 250 (439)
T COG0733 234 MITYSSYLSKKSDLVSS 250 (439)
T ss_pred HHHHHhhcCcccchhhh
Confidence 77888888888887653
No 88
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.78 E-value=56 Score=35.77 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHHhhccCCcc-hhHHHHHHHHHHHHHHHhHHHH
Q 011022 246 VEIMHAMWKPQK-FKAIYLLATLYVMTLTLPSAAA 279 (495)
Q Consensus 246 ~~i~~~m~~p~~-~~~~~~~s~~~~~~~y~~~g~~ 279 (495)
-..-.|+|+|++ .++-...+....+++|+++.++
T Consensus 314 AnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 314 ANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred CCcCccccCccccCCccchHHHHHHHHHHHHHHHH
Confidence 345668999966 4666666888888888876543
No 89
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=82.75 E-value=62 Score=33.32 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=38.0
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHH--HHHHHhhhccCCCCcchhHHH
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI--FGACCATTVFIPSFHNYRIWS 190 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~l~~l~~l~~~s 190 (495)
++..|+.++.++|+.++...+...+...+.......-.+..++.+. ..+...+.++ ...+.+.+.+.++.|.+..+-
T Consensus 64 ~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~-g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~ 142 (390)
T TIGR01197 64 LDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS-HIPLWGGVLITIVDVFLFLFLDKPGLRILEAFV 142 (390)
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHH
Confidence 3788999999998877655443333333332222222222222221 2333333332 222333344556677777764
Q ss_pred H
Q 011022 191 F 191 (495)
Q Consensus 191 ~ 191 (495)
.
T Consensus 143 ~ 143 (390)
T TIGR01197 143 A 143 (390)
T ss_pred H
Confidence 3
No 90
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=77.07 E-value=83 Score=33.07 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--cC--CCCC--CccCCCchHHHHHhhhhHHHHhh
Q 011022 166 WTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASLL--HG--QVEG--VKHAGPTKLVLYFTGATNILYTF 239 (495)
Q Consensus 166 ~~~i~~~i~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~--~~--~~~~--~~~~~~~~~~~~~~a~~~~~faf 239 (495)
+-+++-++.+|+.+.| +.+++++=....+.+.++++.+++..+. +| ..-+ .+..+....+.++.++...+=.|
T Consensus 189 ~FfIFwv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~f 267 (572)
T KOG2466|consen 189 GFFIFWVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANF 267 (572)
T ss_pred HHHHHHHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhcc
Confidence 3355566778877765 4555555444444444444444444443 33 1111 11122222233343333222222
Q ss_pred -cccchhHHHHhhccCCcch--hH--HHHHHHHHHHHHHHhHHHHHHHHhcccccccccccccCC
Q 011022 240 -GGHAVTVEIMHAMWKPQKF--KA--IYLLATLYVMTLTLPSAAAVYWAFGDMLLNHSNAFSLLP 299 (495)
Q Consensus 240 -~~~~~i~~i~~~m~~p~~~--~~--~~~~s~~~~~~~y~~~g~~gY~~fG~~~~~~~~il~~l~ 299 (495)
....+.|..-|--|+|..- .. ++.+.+.+...+=++++..++..||.+.=+.=++++++-
T Consensus 268 stl~~N~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 268 STLIVNAPDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred chhhccCchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 2445677777777777443 22 244455555555567778899999987754334555543
No 91
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=73.26 E-value=10 Score=40.52 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHH
Q 011022 43 DAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAY 88 (495)
Q Consensus 43 ~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~ 88 (495)
++..|+..-++ .|=+++...|+|+..|++++.+...++..|..
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~l 81 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVL 81 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHH
Confidence 44555555443 56699999999999999999988888888764
No 92
>PHA02764 hypothetical protein; Provisional
Probab=73.24 E-value=1e+02 Score=30.65 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=47.7
Q ss_pred CCchHHHHH-HHHHhhhhhhhchHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 38 GGSVYDAWF-SCSSNQVAQVLLTLPYSFSQL--GMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 38 ~~s~~~a~~-~l~~~~iG~GiLsLP~af~~~--G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
..+.+++++ |+.....|.++ +.|+-+... |.- .+..-++.++++.- ..-|..++..+.|+.|.+|.
T Consensus 13 Evs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALP----gAL~YAELGSAmPrAGGdYV----- 81 (399)
T PHA02764 13 SFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIP----LLLMYYKLTTKFPLNGGDYA----- 81 (399)
T ss_pred eccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHH----HHHHHHHHHhhCCCCCceEE-----
Confidence 345677776 77777777765 556533333 322 12222233333333 23344566677777775543
Q ss_pred HHHHHHHhhchhhhhhhHhhhHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCT 137 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~ 137 (495)
-.++++|++++.++.+..+.
T Consensus 82 ---YISRAFGP~~GFLvG~a~WL 101 (399)
T PHA02764 82 ---YIRTAFSSKFYTIFGISLWL 101 (399)
T ss_pred ---EhHHhhCccHHHHHHHHHHH
Confidence 45678999888776554443
No 93
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=73.08 E-value=1.2e+02 Score=31.44 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHhcCCCcccchhhhhhhhhHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHHHHHHhch
Q 011022 329 VWEKAIGMHECKSLCKRAAARLPVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALAHIFTFKS 396 (495)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~~l~~~~~ 396 (495)
.++...+.+ .+++.+|+..|....+.+.++.+.+-+.+.++.+.+.+.+..+-+..++++.+...|+
T Consensus 312 ~~~g~~~~~-~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 312 VMEGFLNWR-IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHhhhccc-CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 444444322 1234567777877777766666555589999999999988888777777777766654
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=72.84 E-value=17 Score=37.81 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=54.5
Q ss_pred ccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccC
Q 011022 113 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180 (495)
Q Consensus 113 ~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l 180 (495)
+-..+++++.+|+.|..+..+...+.|+-.++.....+++.++...+..+.+.|.+++.++...++.+
T Consensus 261 ~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 261 ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Confidence 35667889999999999999988888888888888888887776555667788888877776666554
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=66.46 E-value=1e+02 Score=31.81 Aligned_cols=138 Identities=18% Similarity=0.066 Sum_probs=82.6
Q ss_pred cccccccCCchHHHHHHH------HHhhhhhhhchHH---HHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011022 31 LSNFFWHGGSVYDAWFSC------SSNQVAQVLLTLP---YSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRK 101 (495)
Q Consensus 31 ~~~~~~~~~s~~~a~~~l------~~~~iG~GiLsLP---~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~ 101 (495)
+.+-+-+|-...++...+ +++.=.-|+-.=. ...-.+|++.++.+-++-..+.+.. ..+++...
T Consensus 184 f~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~-- 256 (431)
T COG1114 184 FSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAG-- 256 (431)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcc--
Confidence 333444555545544333 3333334444433 3334567776655555444444333 22222111
Q ss_pred hhcccccccccccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccC
Q 011022 102 EREKVDFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180 (495)
Q Consensus 102 ~~~~~~~~~~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l 180 (495)
+.++..+=..+..+..||+.|..+...+..+.|+-.++.....++|.+....+..+.+.|..++.++.+.+..+
T Consensus 257 -----~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 257 -----LAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred -----cccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 11122334666788899999999998888888888888888889888776667678888888877776665443
No 96
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=63.98 E-value=1.9e+02 Score=30.22 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=32.5
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHh-hC--hhHHHHHHHHHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQ-LG--MLSGILFQLFYGLL 82 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~-~G--~~~g~i~lv~~~~l 82 (495)
..+..-+.+..-..|+|=|=.|-..-+ +| |+.+.+.+++.++.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg 54 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG 54 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH
Confidence 367788899999999999999876544 55 77777777665544
No 97
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=54.52 E-value=3e+02 Score=29.46 Aligned_cols=35 Identities=3% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHhhhhHHHHhhc-ccchhHHHHhhccCCcchhHH
Q 011022 227 LYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKAI 261 (495)
Q Consensus 227 ~~~~a~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~ 261 (495)
-...|++...|+.+ |.+.+...-+-+++.++..+.
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~ 285 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRD 285 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHH
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCCCCcccccc
Confidence 34677899999986 677777777778777776553
No 98
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=54.15 E-value=81 Score=34.96 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHH
Q 011022 40 SVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLI 90 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL 90 (495)
+....+.=-+-.+.|.= .+=|-+..-.+|...+..+++++++.+..|..-+
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISm 167 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISM 167 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443 3447788888999999888888887777776544
No 99
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.08 E-value=3e+02 Score=28.78 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=21.9
Q ss_pred HHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHH
Q 011022 47 SCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLIS 91 (495)
Q Consensus 47 ~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~ 91 (495)
.+..+.+|+|.--.. +...++++.++|.+-.+=+-++.
T Consensus 293 ~Lfsa~lGsG~Qlf~-------l~~~ii~~Alvg~fy~~rGal~s 330 (593)
T KOG1277|consen 293 LLFSAVLGSGAQLFT-------LVLIIIMLALVGVFYTERGALLS 330 (593)
T ss_pred HHHHHHhccccchHH-------HHHHHHHHHHHhhhhccchHHHH
Confidence 467788888843222 23456677777776554443443
No 100
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=45.76 E-value=62 Score=27.00 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=13.0
Q ss_pred chHHHHHHHHHhhhhhhhchHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYS 63 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~a 63 (495)
+|..-++.+.-..+|+..+.+...
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566665555544
No 101
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=45.27 E-value=1.2e+02 Score=31.81 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=50.2
Q ss_pred cHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccC
Q 011022 114 QWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 180 (495)
Q Consensus 114 ~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l 180 (495)
-.....+..+|++++.+..+.....++-.++.....+++.++...+ .+.+.|.+++.++..+++.+
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHh
Confidence 3455678899999999999888888888888877777776655433 56677777777777776654
No 102
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=41.82 E-value=54 Score=29.36 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHh
Q 011022 41 VYDAWFSCSSNQVAQVLLTLPYSFSQ 66 (495)
Q Consensus 41 ~~~a~~~l~~~~iG~GiLsLP~af~~ 66 (495)
+..+..+-+...+|.-+--+||.+.+
T Consensus 89 ~~aAl~sgls~~~g~liPllp~~~~~ 114 (169)
T TIGR00267 89 YMSGFIDGFSTFMGSFVPVLPFLVFD 114 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55677788888888877778987643
No 103
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=35.70 E-value=5e+02 Score=26.62 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=83.6
Q ss_pred CCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 38 GGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLL-GSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~l-s~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
+.+.+--.+.+..+.+++. .++=|.+-.+.|+-+ +++...=+- .+.+.-.+.+=.....+++ +..+.
T Consensus 40 smgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~---------nAltI 108 (473)
T COG4145 40 SMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREY---------NALTI 108 (473)
T ss_pred cccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHh---------CCeeH
Confidence 3445666677777777764 667788877777654 333322222 2333344443322222222 23578
Q ss_pred HHHHHHhh-chhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHH
Q 011022 116 FEVLDGLL-GKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 116 ~dl~~~~~-G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~ 191 (495)
.|+-++-+ ++.-.+...+...+++.+..+++.+-.++.++.. .+.|...-.++++..+..-..+-.+|.....-.
T Consensus 109 ~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~-~gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~ 184 (473)
T COG4145 109 NDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETA-LGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDT 184 (473)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HCCCchhhHHHHHHHHHHHHhhcceeeeehHHH
Confidence 88877665 5666677777777777777777776666655532 234666666777777776667666666655433
No 104
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=2.8e+02 Score=23.31 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011022 49 SSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRK 101 (495)
Q Consensus 49 ~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~ 101 (495)
+-+.+|.++++.-. +.|-+.+.+..++.-+...|+..+-.+=....++|.
T Consensus 44 llg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~ 93 (126)
T COG5264 44 LLGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRS 93 (126)
T ss_pred HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456777777665 788888888888777777888776555445555543
No 105
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=33.82 E-value=2e+02 Score=26.43 Aligned_cols=87 Identities=9% Similarity=-0.019 Sum_probs=47.8
Q ss_pred hhHHhhhhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCccccchhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 011022 368 PINSTVGSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTINVFVVVWVLVVGFGFGGWASMTNFIHQ 447 (495)
Q Consensus 368 ~iislvGa~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~iiv~~G~~~~v~Gty~si~~ii~~ 447 (495)
...=+.|++.++-+..++|+.+.+.+.+++--.--+.| ....+..-+..++..++ |++|.+.....|...+.+.
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~-----~c~~r~~M~~Sil~a~i-gi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNE-----CCGNRCGMFLSILFAAI-GILGAGYCFIVSGLALSEG 118 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCCcccccccCc-----ccccccchHHHHHHHHH-HHHHHHHHHHHHHHHhhhC
Confidence 34556788888888899999999988776311000000 00000112345554443 7777666666676666651
Q ss_pred ----ccccccccccccCC
Q 011022 448 ----IDTFGLFTKCYQCL 461 (495)
Q Consensus 448 ----~~~~~~~~~~~~c~ 461 (495)
..+ ..+.-||.|.
T Consensus 119 P~C~~~~-~~W~ypF~~~ 135 (195)
T PF05805_consen 119 PLCCTGN-LQWFYPFKDT 135 (195)
T ss_pred CeeeccC-CcCCCCCCCC
Confidence 111 4455566663
No 106
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=32.72 E-value=95 Score=30.96 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=44.6
Q ss_pred HHHHhhhhHHHHhhccc--chhHHHHh----------hccCCcchhHH---H---HHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFKAI---Y---LLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~i~~i~~----------~m~~p~~~~~~---~---~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
++.+..+.+..|+|..- ..-||+.+ .|+++|+.+|. + ......+.++=....+.|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 46677788899998643 35566765 35555444332 1 2222222222345578899999998
Q ss_pred ccccccccccCCC
Q 011022 288 LLNHSNAFSLLPR 300 (495)
Q Consensus 288 ~~~~~~il~~l~~ 300 (495)
.++ +.+++++.+
T Consensus 225 ~rE-sgv~~rLs~ 236 (360)
T PF03977_consen 225 LRE-SGVVERLSK 236 (360)
T ss_pred HHH-hccHHHHHH
Confidence 884 667776653
No 107
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=32.04 E-value=54 Score=30.87 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHhcCcchhhHHhh---------hhhhhhhhHHhhhHHHHHHHhchhhhhhhcccCCCCccccchhhhhh
Q 011022 350 LPVVIPIWFLAIVFPFFGPINSTV---------GSLLVSFTVYIIPALAHIFTFKSAAARENAVEQPPKFVGRWVGTYTI 420 (495)
Q Consensus 350 ~~~~~~~~~iA~~ip~~~~iislv---------Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 420 (495)
-...+.++++|.+++.++-++..+ ||.+|.-++++= |+.+-+...+ .+.++-. ..|+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~------f~~y~n~----q~wL 225 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDD------FESYFNG----QYWL 225 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccc------ccccccc----chHH
Confidence 445566677787777777776664 777777777664 4444332211 1111110 1234
Q ss_pred HHHHHHHHHHHHhhhhHH--HHHHHHHHhcc
Q 011022 421 NVFVVVWVLVVGFGFGGW--ASMTNFIHQID 449 (495)
Q Consensus 421 ~~~iiv~~G~~~~v~Gty--~si~~ii~~~~ 449 (495)
-|+++++ |++.+.-|++ ..|+..-+.+.
T Consensus 226 wwi~~vl-G~ll~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 226 WWIFLVL-GLLLFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHH-HHHHHHHHHHhHHHHhhHHHHHh
Confidence 5555554 7776665654 45555554443
No 108
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=29.60 E-value=2.9e+02 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011022 73 ILFQLFYGLLGSWTAYLISIL 93 (495)
Q Consensus 73 ~i~lv~~~~ls~~t~~lL~~~ 93 (495)
.++++..-++..||+.-.++-
T Consensus 141 PILvvYfi~l~f~t~rRqIqH 161 (180)
T COG5249 141 PILVVYFIFLVFYTARRQIQH 161 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777888888766543
No 109
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=29.25 E-value=6.8e+02 Score=26.18 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=20.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhHHHHHHHHhcccc
Q 011022 253 WKPQKFKAIYLLATLYVMTLTLPSAAAVYWAFGDML 288 (495)
Q Consensus 253 ~~p~~~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~~ 288 (495)
||+++.++....++.+...+-..++. ....|++..
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~-i~~~f~~~i 345 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIAL-LLLLFREPI 345 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 66677777777777766666555444 334454433
No 110
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.24 E-value=1.7e+02 Score=22.88 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=30.2
Q ss_pred hHHHHhhcccchhHHHHhhccCCcchh-HHHHHHHHHHHHHHHhHHHHHHHHhcccc
Q 011022 233 TNILYTFGGHAVTVEIMHAMWKPQKFK-AIYLLATLYVMTLTLPSAAAVYWAFGDML 288 (495)
Q Consensus 233 ~~~~faf~~~~~i~~i~~~m~~p~~~~-~~~~~s~~~~~~~y~~~g~~gY~~fG~~~ 288 (495)
|+...+-+|.....+..++=.+|.+.. |++. .+.++.-+-+++|++.|..|| ..
T Consensus 18 GIiLL~~ACIFAfidFSK~~s~~~~~~wRalS-ii~FIlG~vl~lGilifs~y~-~C 72 (91)
T PHA02680 18 GVLLLTAACVFAFVDFSKNTSNVTDYVWRALS-VTCFIVGAVLLLGLFVFSMYR-KC 72 (91)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhc-cc
Confidence 444445455555566666555554443 3333 223333334677899999998 44
No 111
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=27.17 E-value=7.8e+02 Score=26.17 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=15.4
Q ss_pred CchHHHHHHHHHhhhhhhhchH
Q 011022 39 GSVYDAWFSCSSNQVAQVLLTL 60 (495)
Q Consensus 39 ~s~~~a~~~l~~~~iG~GiLsL 60 (495)
-|.++=...+..+-+|+|++--
T Consensus 75 fS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 75 FSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp S-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCchHHHHHHHHHHhcchhhcc
Confidence 4456666777888888888754
No 112
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=26.92 E-value=1e+02 Score=30.63 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred HHHHhhhhHHHHhhccc--chhHHHHh----------hccCCcchh---HH---HHHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFK---AI---YLLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~i~~i~~----------~m~~p~~~~---~~---~~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
++.+.++.+..|+|..- ..-||+.+ .|+++++.+ |. +......+.++=....+.|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 46677888899998643 35566665 344443332 22 22222223333345578899999998
Q ss_pred ccccccccccCCC
Q 011022 288 LLNHSNAFSLLPR 300 (495)
Q Consensus 288 ~~~~~~il~~l~~ 300 (495)
.+ ++.+++++.+
T Consensus 225 lr-EsGv~~rl~~ 236 (354)
T TIGR01109 225 MR-ESGVVERLSK 236 (354)
T ss_pred HH-HhccHHHHHH
Confidence 87 4667776654
No 113
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.89 E-value=1.1e+02 Score=30.85 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=44.1
Q ss_pred HHHHhhhhHHHHhhccc--chhHHHHh----------hccCCcchh---HHH---HHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFK---AIY---LLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~i~~i~~----------~m~~p~~~~---~~~---~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
++.+.++.+..|+|..- ..-||+.+ .|+++|+.. |.+ ......+.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15475 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45677788899998632 34566665 344444332 222 2222222222345578899999998
Q ss_pred ccccccccccCCC
Q 011022 288 LLNHSNAFSLLPR 300 (495)
Q Consensus 288 ~~~~~~il~~l~~ 300 (495)
.+ ++.+++++.+
T Consensus 296 lr-EsGVv~rLs~ 307 (433)
T PRK15475 296 MR-ESGVVERLSD 307 (433)
T ss_pred HH-HhccHHHHHH
Confidence 87 4667777664
No 114
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=24.01 E-value=8.3e+02 Score=25.39 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=44.7
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHh-hC--hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFSQ-LG--MLSGILFQLFYGLLGS-WTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~~-~G--~~~g~i~lv~~~~ls~-~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 115 (495)
+.+..-+.+..-..|+|=|-.|-..-+ +| |+.+..-+++.|+.-= .+...+.+. . .+|
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~----------------g--~~~ 67 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALY----------------G--GGV 67 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhcc----------------C--CCH
Confidence 356778888999999998888866433 44 6666666655544322 221111110 1 268
Q ss_pred HHHHHHhhchhhhhhhH
Q 011022 116 FEVLDGLLGKHWRNVGL 132 (495)
Q Consensus 116 ~dl~~~~~G~~~~~~~~ 132 (495)
++++++. |||...+..
T Consensus 68 ~~l~~~i-~~~fg~~f~ 83 (431)
T COG1114 68 ESLATRI-GPWFGVLFA 83 (431)
T ss_pred HHHhhhc-cchHHHHHH
Confidence 8888887 676665443
No 115
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=23.31 E-value=1.3e+02 Score=30.52 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHhhhhHHHHhhccc--chhHHHHh----------hccCCcchh---HHH---HHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFK---AIY---LLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~i~~i~~----------~m~~p~~~~---~~~---~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
++.+.++.+..|+|..- ..-||+.+ .|+++|+.. |.+ ......+.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15476 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45677788899998642 34566665 344443332 222 2222222222345578899999998
Q ss_pred ccccccccccCCC
Q 011022 288 LLNHSNAFSLLPR 300 (495)
Q Consensus 288 ~~~~~~il~~l~~ 300 (495)
.+ ++.+++++.+
T Consensus 296 lr-EsGVv~rLs~ 307 (433)
T PRK15476 296 MR-ESGVVERLSD 307 (433)
T ss_pred HH-HhccHHHHHH
Confidence 87 4667777664
No 116
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=23.26 E-value=1.3e+02 Score=30.51 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHhhhhHHHHhhccc--chhHHHHh----------hccCCcchh---HHH---HHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFK---AIY---LLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~i~~i~~----------~m~~p~~~~---~~~---~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
++.+.++.+..|+|..- ..-||+.+ .|+++|+.. |.+ ......+.++=....+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15477 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45677788899998642 34566665 344443332 222 2222222222345578899999998
Q ss_pred ccccccccccCCC
Q 011022 288 LLNHSNAFSLLPR 300 (495)
Q Consensus 288 ~~~~~~il~~l~~ 300 (495)
.+ ++.+++++.+
T Consensus 296 lr-EsGVv~rLs~ 307 (433)
T PRK15477 296 MR-ESGVVERLSD 307 (433)
T ss_pred HH-HhccHHHHHH
Confidence 87 4667777664
No 117
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=23.12 E-value=7.7e+02 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhc--Cc---chhhHHhhhhhhhhhhHHhhhHHHHHHHhc
Q 011022 350 LPVVIPIWFLAIVF--PF---FGPINSTVGSLLVSFTVYIIPALAHIFTFK 395 (495)
Q Consensus 350 ~~~~~~~~~iA~~i--p~---~~~iislvGa~~~~~l~~ilP~l~~l~~~~ 395 (495)
..+++.+=.++-.+ |. .+.+.+++|+ |.++|+..++
T Consensus 286 a~lll~aD~i~r~l~~p~eiPvGivtaliG~----------p~fl~ll~r~ 326 (330)
T PRK10440 286 ALLLLAADLCAQQLFMPYQLPVGVVTVSLGG----------IYLIVLLIQE 326 (330)
T ss_pred HHHHHHHHHHHHHhcCCcCccHHHHHHHHHH----------HHHHHHHHhh
Confidence 34444444555433 31 4455555554 5666666543
No 118
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.03 E-value=4.4e+02 Score=21.84 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=36.3
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHH
Q 011022 36 WHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW-TAYLI 90 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~-t~~lL 90 (495)
-+|.|.-+.......+....-++++|.+.--.+|......+++..+++.. +...|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l 70 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLL 70 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45776666666655555545678899877767888877776666666654 44455
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.95 E-value=73 Score=21.46 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcccc
Q 011022 264 LATLYVMTLTLPSAAAVYWAFGDML 288 (495)
Q Consensus 264 ~s~~~~~~~y~~~g~~gY~~fG~~~ 288 (495)
+++.+.+++..+.|...|.+||...
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4555666666677788899998654
No 120
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.49 E-value=69 Score=21.82 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccc
Q 011022 261 IYLLATLYVMTLTLPSAAAVYWAFGDML 288 (495)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gY~~fG~~~ 288 (495)
+..+++.+.+++..+.|..-|.+||...
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 3444556666666677777888888754
Done!