Query 011022
Match_columns 495
No_of_seqs 196 out of 1767
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 2.2E-13 7.5E-18 141.0 31.2 239 35-286 6-252 (445)
2 3gia_A Uncharacterized protein 99.4 5.6E-11 1.9E-15 122.8 28.4 237 35-285 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.2 4.5E-09 1.5E-13 110.5 29.8 237 34-287 8-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.8 1.8E-06 6E-11 90.4 27.9 203 40-257 28-239 (501)
5 3dh4_A Sodium/glucose cotransp 98.1 0.008 2.7E-07 63.0 33.5 148 36-198 19-168 (530)
6 2xq2_A Sodium/glucose cotransp 97.8 0.021 7.2E-07 60.7 29.4 148 36-198 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 54.6 1.9E+02 0.0066 29.5 37.2 110 176-287 180-309 (519)
8 2xq2_A Sodium/glucose cotransp 34.3 32 0.0011 36.0 4.5 18 476-493 576-593 (593)
9 1mb1_A MBP1, MLU1-box binding 21.5 30 0.001 28.3 1.1 16 479-494 114-129 (130)
10 4b4a_A TATC, SEC-independent p 19.6 5E+02 0.017 23.5 10.7 92 301-396 59-177 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.64 E-value=2.2e-13 Score=141.03 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=147.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
.+++.+.++..+..+++++|+|++.+|....++|.. +++..++.++++......+ .|+.++.|+.| .
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~----~el~~~~p~~G--------g 72 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVY----AKMSFLDPSPG--------G 72 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHH----HHHHHHCCCTT--------T
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHH----HHHHccCCCCC--------C
Confidence 345678999999999999999999999998899964 7777777777776666555 45555554322 5
Q ss_pred HHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHH-HH--HHhhhccCCCCcchhHHHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIF-GA--CCATTVFIPSFHNYRIWSF 191 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~-~~--i~~pl~~l~~l~~l~~~s~ 191 (495)
..+..++.+||+.+++......+........+....++.+..+.+..+......+. .. +.+-....+..|...+++.
T Consensus 73 ~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (445)
T 3l1l_A 73 SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 66778999999999888776666554444444444444444333322222111111 11 1111222344556666555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC----CccCCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCc-chhHHHHHHH
Q 011022 192 LGLLMTTYTAWYLTIASLLHGQVEG----VKHAGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKAIYLLAT 266 (495)
Q Consensus 192 ~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~s~ 266 (495)
+.....+...+.+++..+...+.++ .+.....++.+++.++....|+|.|...+....+|+|||+ +.+|.+..+.
T Consensus 153 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~ 232 (445)
T 3l1l_A 153 VATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232 (445)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHH
Confidence 4443333222222222222221111 1111222356778888999999999999999999999994 5789999999
Q ss_pred HHHHHHHHhHHHHHHHHhcc
Q 011022 267 LYVMTLTLPSAAAVYWAFGD 286 (495)
Q Consensus 267 ~~~~~~y~~~g~~gY~~fG~ 286 (495)
.++.++|+...+......+.
T Consensus 233 ~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 233 LIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhcCCH
Confidence 99999999888776666654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.43 E-value=5.6e-11 Score=122.84 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=139.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011022 35 FWHGGSVYDAWFSCSSNQVAQVLLTLPY-SFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (495)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~ 113 (495)
.+++.+.++..+..+++++|+|++.+|. +..++|. ..++..++.++++..+...+ .|+.++.|+.|
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~----~el~~~~P~~G-------- 70 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSY----TKLGAKIVSNA-------- 70 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHH----HHHHTTCCCTT--------
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCC--------
Confidence 4567789999999999999999999774 4566776 46777777777777766655 45665554322
Q ss_pred cHHHHHHHhhchh--hhhhhHhhhHHHHhHHHHHHHHHhhhhcccccccccchhhHHHH-HH--HHhhhccCCCCcchhH
Q 011022 114 QWFEVLDGLLGKH--WRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIF-GA--CCATTVFIPSFHNYRI 188 (495)
Q Consensus 114 ~y~dl~~~~~G~~--~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~-~~--i~~pl~~l~~l~~l~~ 188 (495)
...+..++.+|++ +.++ .....+........+....++.+..+.+..+...+..+. .+ +.+-....+..|...+
T Consensus 71 g~y~~~~~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 71 GPIAFIHKAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp THHHHHHHHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHhHHHHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567888889986 2322 222222222222223223333322222222222222111 11 1122223345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-CCCchHHHHHhhhhHHHHhhcccchhHHHHhhccCCcc-hhHHHHHHH
Q 011022 189 WSFLGLLMTTYTAWYLTIASLLHGQVEGVKH-AGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKAIYLLAT 266 (495)
Q Consensus 189 ~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~s~ 266 (495)
++.+.....+...+.+++..+...+.++... ..+.++.+++.++....|+|.|...+....+|+|||+| .+|.+..+.
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 5554444333222222222222222222222 23345667888888889999999999999999999965 799999999
Q ss_pred HHHHHHHHhHHHHHHHHhc
Q 011022 267 LYVMTLTLPSAAAVYWAFG 285 (495)
Q Consensus 267 ~~~~~~y~~~g~~gY~~fG 285 (495)
.++.++|+...+......+
T Consensus 230 ~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999987666554444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.25 E-value=4.5e-09 Score=110.49 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=124.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--hhhhccccccc
Q 011022 34 FFWHGGSVYDAWFSCSSNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSW-TAYLISILYVEYRT--RKEREKVDFRN 110 (495)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~lv~~~~ls~~-t~~lL~~~~~~~~~--~~~~~~~~~~~ 110 (495)
+.+++.+.++.....++.++| +.++|. ....|.. .++..++.+++... ....+ .|+.. +.| .|
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~----ael~s~~~~P-~G----- 73 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCA----AEMATVDGWE-EG----- 73 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHH----HHHHTTSCC---------
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHH----HHHcccccCC-CC-----
Confidence 345667899999999999886 567775 4667754 33333333333222 33333 56666 665 44
Q ss_pred ccccHHHHHHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccc--cccccch---hhHHH-HHHHHhhhccCCCCc
Q 011022 111 HVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYI--NDNLDKR---TWTYI-FGACCATTVFIPSFH 184 (495)
Q Consensus 111 ~~~~y~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~--~~~~~~~---~~~~i-~~~i~~pl~~l~~l~ 184 (495)
......++.+||+.+++......+........+....+..+.++ .+..+.. .+.+. ...+.+-+......|
T Consensus 74 ---G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~ 150 (511)
T 4djk_A 74 ---GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTK 150 (511)
T ss_dssp ---CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred ---ChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChH
Confidence 55668888999988877665544443332222222222222222 2222211 11111 111122222345566
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHh---hcCCCC----CCccCCC-chHHHHHhhhhHHHHhhcccchhHHHHhhccCC
Q 011022 185 NYRIWSFLGLLMT-TYTAWYLTIASL---LHGQVE----GVKHAGP-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP 255 (495)
Q Consensus 185 ~l~~~s~~~~~~~-~~~~~~i~~~~~---~~~~~~----~~~~~~~-~~~~~~~~a~~~~~faf~~~~~i~~i~~~m~~p 255 (495)
...++..+..... +...+.+++..+ ..+.+. +.+...+ ....+.+.++...+|+|.|...+....+|+|||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P 230 (511)
T 4djk_A 151 YTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNP 230 (511)
T ss_dssp SHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 6666665543321 111111111111 122111 1111111 111233455678899999999999999999999
Q ss_pred cc-hhHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 011022 256 QK-FKAIYLLATLYVMTLTLPSAAAVYWAFGDM 287 (495)
Q Consensus 256 ~~-~~~~~~~s~~~~~~~y~~~g~~gY~~fG~~ 287 (495)
+| .+|++..++.++.++|+...+......+++
T Consensus 231 ~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 231 GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 65 799999999999999998877666555543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.83 E-value=1.8e-06 Score=90.41 Aligned_cols=203 Identities=11% Similarity=0.032 Sum_probs=105.1
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011022 40 SVYDAWFSCSSNQVAQVLLTLPYSFS-QLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (495)
Q Consensus 40 s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~dl 118 (495)
++++-+..-....++.+.+.+...+. ..++..+++.+++..++...-+.++.....++ + .++.++
T Consensus 28 ~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~-------------G-l~~~v~ 93 (501)
T 2jln_A 28 GPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW-------------G-INFTVA 93 (501)
T ss_dssp CHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-------------C-CCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc-------------C-CChhhh
Confidence 34444444444444444444433332 23455566665555555444444443332222 1 368899
Q ss_pred HHHhhchhhhhhhHhhhHHHHhHHHHHHHHHhhhhcccccc---ccc-chhhHHHHHHHHhhhccCCCCcchhHHHHHHH
Q 011022 119 LDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYIND---NLD-KRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (495)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~~~~~~~---~~~-~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~~ 194 (495)
.|..||+++..+..++..+..++-..+.....++.+..+.. ..+ ...+.+++.++.+++.+ ..++.++++..+..
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~~ 172 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTF-YGITFIRWMNVFAS 172 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 99999999999988888887777766666555555443211 222 34455666666666654 34677777776665
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CC-CccCCCchHHHHHhhhhH-HHHhhcccchhHHHHhhccCCcc
Q 011022 195 LMTTYTAWYLTIASLLHGQV--EG-VKHAGPTKLVLYFTGATN-ILYTFGGHAVTVEIMHAMWKPQK 257 (495)
Q Consensus 195 ~~~~~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~~a~~~-~~faf~~~~~i~~i~~~m~~p~~ 257 (495)
...+...+++.+..+.+... .+ .+.........++.++.. +.+.-....+.++..+.+|++++
T Consensus 173 p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 54443332333333222111 00 010111111223333322 11211233678899999998877
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.12 E-value=0.008 Score=63.04 Aligned_cols=148 Identities=5% Similarity=-0.051 Sum_probs=79.5
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.+++. .+++|-...+.|+........ .++.....+..+.. .+++ .+..|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p---~~~~----------~~~~T 84 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFIE----------KGIYT 84 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHH---HHHH----------TTCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHH---HHHH----------cCCcc
Confidence 456678999999988888775 788999888889763221111 11111111222222 1111 23469
Q ss_pred HHHHHHHhhchhhhhhhHhhhHH-HHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
..|.-++.||++.+.+..++..+ +.+......+...+..++.+ .+.+....+++..++.+..+.+-.++...+...+-
T Consensus 85 ~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 85 IPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999988776654332 32221111111222222222 23455555556666667777777788888877766
Q ss_pred HHHHH
Q 011022 194 LLMTT 198 (495)
Q Consensus 194 ~~~~~ 198 (495)
.+..+
T Consensus 164 ~~im~ 168 (530)
T 3dh4_A 164 VFFLV 168 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.77 E-value=0.021 Score=60.68 Aligned_cols=148 Identities=5% Similarity=-0.049 Sum_probs=77.3
Q ss_pred ccCCchHHHHHHHHHhhhhhh-hchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQV-LLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 114 (495)
+++.+++...+.+..+.+++. .++.|....+.|+........ .++........+.. .+++ .+..|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p---~~~r----------~~~~T 113 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFIE----------KGIYT 113 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHH---HHHH----------TTCCS
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHH---HHHh----------CCCCC
Confidence 345668888888888887775 678998888888753211111 11111111122221 1111 23469
Q ss_pred HHHHHHHhhchhhhhhhHhhhHH-HHhHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhhhccCCCCcchhHHHHHH
Q 011022 115 WFEVLDGLLGKHWRNVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (495)
Q Consensus 115 y~dl~~~~~G~~~~~~~~~~~~~-~~~g~~v~y~i~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~l~~l~~l~~~s~~~ 193 (495)
..|.-++.||++.+.+..++..+ +.+......+...+..++.+. +.+....+++..++++..+.+-.++...+.-.+-
T Consensus 114 ~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~-Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ 192 (593)
T 2xq2_A 114 IPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL-GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 192 (593)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred cHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999888766554332 222211112212222222221 2344445555566667777777888888777665
Q ss_pred HHHHH
Q 011022 194 LLMTT 198 (495)
Q Consensus 194 ~~~~~ 198 (495)
.+..+
T Consensus 193 ~iiml 197 (593)
T 2xq2_A 193 VFFLV 197 (593)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=54.56 E-value=1.9e+02 Score=29.51 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=60.2
Q ss_pred hhccCCCC-cchhHHHHHHHHHHHHHHHHHHHHHhh-cC----C--------CCCCccCCCchHHHHHhhhhHHHHhhc-
Q 011022 176 TTVFIPSF-HNYRIWSFLGLLMTTYTAWYLTIASLL-HG----Q--------VEGVKHAGPTKLVLYFTGATNILYTFG- 240 (495)
Q Consensus 176 pl~~l~~l-~~l~~~s~~~~~~~~~~~~~i~~~~~~-~~----~--------~~~~~~~~~~~~~~~~~a~~~~~faf~- 240 (495)
-++..|.. |.+++.+.+-+..-.+..+++++.++. .| . .||++. -.+..-...|.+.+.|+.+
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~--L~~~~vw~~A~gQ~FFSLsl 257 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEK--LKDPGVWIAAVGQIFFTLSL 257 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTS--TTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHH--hCCHHHHHHHHHHHHHHhHH
Confidence 34556777 668888877665444333344444443 22 1 122221 1122345778899999996
Q ss_pred ccchhHHHHhhccCCcchhHHHHHHHHHHHHH-----HHhHHHHHHHHhccc
Q 011022 241 GHAVTVEIMHAMWKPQKFKAIYLLATLYVMTL-----TLPSAAAVYWAFGDM 287 (495)
Q Consensus 241 ~~~~i~~i~~~m~~p~~~~~~~~~s~~~~~~~-----y~~~g~~gY~~fG~~ 287 (495)
|-+.+...-+-+++.++..+........-+.. ..+++.+||.++|.+
T Consensus 258 G~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~ 309 (519)
T 2a65_A 258 GFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 309 (519)
T ss_dssp TSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHH
T ss_pred HHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 56677777777777776655332222222211 234455677666654
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=34.33 E-value=32 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCC
Q 011022 476 TTVAPSPHHQPSFNHTHH 493 (495)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (495)
+.+.|+|.+.|.-.|.||
T Consensus 576 ~~~~~~~~~~~~~~~~~~ 593 (593)
T 2xq2_A 576 IKASYKSGGSPGHHHHHH 593 (593)
T ss_dssp ------------------
T ss_pred hcCCCCCCCCCCcccCCC
Confidence 455566777777666665
No 9
>1mb1_A MBP1, MLU1-box binding protein; transcription regulation, cell-cycle, transcription factor; 2.10A {Saccharomyces cerevisiae} SCOP: d.34.1.1 PDB: 1l3g_A
Probab=21.53 E-value=30 Score=28.27 Aligned_cols=16 Identities=44% Similarity=0.885 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 011022 479 APSPHHQPSFNHTHHN 494 (495)
Q Consensus 479 ~~~~~~~~~~~~~~~~ 494 (495)
+|.-.+++.-+|.||.
T Consensus 114 ap~h~~~~~~~~~~~~ 129 (130)
T 1mb1_A 114 APKHHHASKVDHHHHH 129 (130)
T ss_dssp ----------------
T ss_pred CCcccccccccccccC
Confidence 5666777777777763
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=19.60 E-value=5e+02 Score=23.47 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---hcCCCcccchhhhhh-hhhHHHHHHHHHHh--------------
Q 011022 301 SPFRDMAVILMLIHQFITFGFACTPLYFVWEKA---IGMHECKSLCKRAAA-RLPVVIPIWFLAIV-------------- 362 (495)
Q Consensus 301 ~~~~~i~~~~~~i~~~~sypl~~~p~~~~~~~~---~~~~~~~~~~~~~~~-r~~~~~~~~~iA~~-------------- 362 (495)
+.+..-.++.+..+++.+.|... .|++.-. +.++|++ .....+. ...+...-...|.+
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~il---yQiw~Fi~PgLy~~Err-~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~ 134 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVIL---YQFWRFIEPALYSHEKR-AFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLG 134 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTTTSCCCTT-TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45777788889999999999864 3444322 2224443 2222222 22222222222221
Q ss_pred ------cC--cchhhHHhhhhhh-hhhhHHhhhHHHHHHHhch
Q 011022 363 ------FP--FFGPINSTVGSLL-VSFTVYIIPALAHIFTFKS 396 (495)
Q Consensus 363 ------ip--~~~~iislvGa~~-~~~l~~ilP~l~~l~~~~~ 396 (495)
.| ++++.++++-.+. ...++|-+|.++.+..+-+
T Consensus 135 ~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~G 177 (249)
T 4b4a_A 135 FTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAG 177 (249)
T ss_dssp STTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred hhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 14 5566666655443 3457888999998877643
Done!