Query 011022
Match_columns 495
No_of_seqs 196 out of 1767
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 19:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011022.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011022hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 92.3 5.4 0.00039 38.6 37.5 30 39-68 5-35 (509)
2 d1dsqa_ g.40.1.1 (A:) Nucleic 14.8 24 0.0017 18.0 0.6 10 455-464 3-12 (26)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 10.0 1.5E+02 0.011 16.6 3.1 22 379-400 11-32 (36)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 7.9 1.5E+02 0.011 15.5 2.4 15 430-444 15-29 (32)
5 d1q90g_ f.23.26.1 (G:) PetG su 5.8 1.9E+02 0.014 15.2 2.1 16 67-82 7-22 (30)
6 d1jb0l_ f.31.1.1 (L:) Photosys 5.7 5.5E+02 0.04 19.2 6.3 25 229-253 123-147 (151)
7 d1oedc_ f.36.1.1 (C:) Acetylch 5.6 2.8E+02 0.02 22.5 4.6 39 351-389 42-80 (260)
8 d1q90r_ f.23.12.1 (R:) ISP sub 4.2 3.1E+02 0.022 15.7 2.5 18 373-390 18-35 (39)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 4.2 3.1E+02 0.023 14.4 2.4 20 55-76 8-27 (32)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 3.3 1.1E+03 0.078 19.3 8.0 69 36-104 374-444 (447)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=92.26 E-value=5.4 Score=38.57 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHhhhhhh-hchHHHHHHhhC
Q 011022 39 GSVYDAWFSCSSNQVAQV-LLTLPYSFSQLG 68 (495)
Q Consensus 39 ~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G 68 (495)
.|..+-++..++..+|.| +.=.||-..+-|
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nG 35 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG 35 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcC
Confidence 456788899999999998 666999875554
No 2
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=14.81 E-value=24 Score=18.02 Aligned_cols=10 Identities=20% Similarity=0.693 Sum_probs=7.3
Q ss_pred cccccCCCCC
Q 011022 455 TKCYQCLPPQ 464 (495)
Q Consensus 455 ~~~~~c~~~~ 464 (495)
+-||||+..+
T Consensus 3 pvcfscgktg 12 (26)
T d1dsqa_ 3 PVCFSCGKTG 12 (26)
T ss_dssp CBCTTTCCBS
T ss_pred CEEEecCCcc
Confidence 3489998863
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.02 E-value=1.5e+02 Score=16.58 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=14.8
Q ss_pred hhhHHhhhHHHHHHHhchhhhh
Q 011022 379 SFTVYIIPALAHIFTFKSAAAR 400 (495)
Q Consensus 379 ~~l~~ilP~l~~l~~~~~~~~~ 400 (495)
+.+-.+.|..|.+.++-+..++
T Consensus 11 t~LFilvPt~FLliLyvqT~s~ 32 (36)
T d2axtm1 11 TALFVLVPSVFLIILYVQTESQ 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhheeeccc
Confidence 3455678888888777665444
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.85 E-value=1.5e+02 Score=15.53 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=9.5
Q ss_pred HHHhhhhHHHHHHHH
Q 011022 430 VVGFGFGGWASMTNF 444 (495)
Q Consensus 430 ~~~~v~Gty~si~~i 444 (495)
++|...|..-+|+++
T Consensus 15 ffgiavgiifaiksi 29 (32)
T d2e74e1 15 FFGIAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHhhheeeEEEE
Confidence 344456777777765
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.79 E-value=1.9e+02 Score=15.22 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=10.7
Q ss_pred hChhHHHHHHHHHHHH
Q 011022 67 LGMLSGILFQLFYGLL 82 (495)
Q Consensus 67 ~G~~~g~i~lv~~~~l 82 (495)
+|+++|++-..+.|++
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5777777776666654
No 6
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=5.67 E-value=5.5e+02 Score=19.18 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=17.7
Q ss_pred HhhhhHHHHhhcccchhHHHHhhcc
Q 011022 229 FTGATNILYTFGGHAVTVEIMHAMW 253 (495)
Q Consensus 229 ~~a~~~~~faf~~~~~i~~i~~~m~ 253 (495)
+.++|-.+|||..-.++.-+..-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 5567889999987777666655443
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.58 E-value=2.8e+02 Score=22.45 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCcchhhHHhhhhhhhhhhHHhhhHHH
Q 011022 351 PVVIPIWFLAIVFPFFGPINSTVGSLLVSFTVYIIPALA 389 (495)
Q Consensus 351 ~~~~~~~~iA~~ip~~~~iislvGa~~~~~l~~ilP~l~ 389 (495)
.+.++...++-.+|.-+.-+-++|-.....+.++.=+++
T Consensus 42 s~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~ 80 (260)
T d1oedc_ 42 AQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 344555567777787776666666665555555544433
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.23 E-value=3.1e+02 Score=15.68 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=10.9
Q ss_pred hhhhhhhhhHHhhhHHHH
Q 011022 373 VGSLLVSFTVYIIPALAH 390 (495)
Q Consensus 373 vGa~~~~~l~~ilP~l~~ 390 (495)
.|+++........|-.-|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 466666666666665544
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.18 E-value=3.1e+02 Score=14.37 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=10.0
Q ss_pred hhhchHHHHHHhhChhHHHHHH
Q 011022 55 QVLLTLPYSFSQLGMLSGILFQ 76 (495)
Q Consensus 55 ~GiLsLP~af~~~G~~~g~i~l 76 (495)
+.+||.-.-| .||.+|.+++
T Consensus 8 aa~lsfglif--vgwglgalll 27 (32)
T d2e74f1 8 AALLSFGLIF--VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHhhHHH--HHhHHHHHHh
Confidence 3444444333 5666665544
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=1.1e+03 Score=19.31 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHHHHhhhhh--hhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011022 36 WHGGSVYDAWFSCSSNQVAQ--VLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKERE 104 (495)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~--GiLsLP~af~~~G~~~g~i~lv~~~~ls~~t~~lL~~~~~~~~~~~~~~ 104 (495)
++..+...+..+......|. |-+-..+.....|+-.....+...++++......+..-..+-+++..++
T Consensus 374 ~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 374 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444 (447)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Done!