Query 011023
Match_columns 495
No_of_seqs 282 out of 1349
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02742 Probable galacturonos 100.0 4E-140 9E-145 1107.2 41.2 486 10-495 48-534 (534)
2 PLN02829 Probable galacturonos 100.0 2E-138 4E-143 1104.5 39.7 480 11-495 158-638 (639)
3 PLN02910 polygalacturonate 4-a 100.0 2E-136 4E-141 1087.1 39.0 463 28-495 189-656 (657)
4 PLN02769 Probable galacturonos 100.0 4E-126 9E-131 1016.2 38.4 454 28-495 173-629 (629)
5 PLN02718 Probable galacturonos 100.0 1E-122 3E-127 985.1 38.5 453 18-495 147-602 (603)
6 PLN02523 galacturonosyltransfe 100.0 5E-116 1E-120 925.5 40.3 460 32-495 78-558 (559)
7 PLN02870 Probable galacturonos 100.0 1E-114 3E-119 911.8 31.2 424 61-495 89-531 (533)
8 PLN02867 Probable galacturonos 100.0 3E-113 6E-118 905.7 32.3 423 69-495 93-534 (535)
9 PLN02659 Probable galacturonos 100.0 4E-113 9E-118 900.8 32.0 423 70-495 91-532 (534)
10 cd06429 GT8_like_1 GT8_like_1 100.0 1.3E-57 2.8E-62 453.2 21.2 255 190-483 1-257 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 1.3E-44 2.8E-49 372.7 20.7 263 187-490 23-293 (334)
12 cd06431 GT8_LARGE_C LARGE cata 100.0 1.4E-41 3E-46 342.3 19.3 261 191-491 4-277 (280)
13 cd00505 Glyco_transf_8 Members 100.0 8.9E-40 1.9E-44 322.4 19.7 237 190-467 1-245 (246)
14 cd04194 GT8_A4GalT_like A4GalT 100.0 1.7E-39 3.7E-44 319.8 17.7 238 190-468 1-248 (248)
15 COG1442 RfaJ Lipopolysaccharid 100.0 1.7E-38 3.7E-43 324.1 20.1 259 189-490 2-268 (325)
16 PF01501 Glyco_transf_8: Glyco 100.0 3.6E-36 7.9E-41 291.3 16.1 245 191-469 1-249 (250)
17 cd06432 GT8_HUGT1_C_like The C 100.0 1.9E-32 4.1E-37 271.7 15.0 234 190-462 1-240 (248)
18 cd06430 GT8_like_2 GT8_like_2 100.0 5.6E-32 1.2E-36 273.6 18.1 253 190-485 1-276 (304)
19 cd02537 GT8_Glycogenin Glycoge 99.9 2.9E-25 6.2E-30 219.0 16.5 219 192-482 3-237 (240)
20 PLN00176 galactinol synthase 99.9 8.5E-24 1.8E-28 216.9 18.8 233 199-485 36-294 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.8 3.6E-18 7.8E-23 171.8 13.4 141 296-470 76-242 (278)
22 KOG1879 UDP-glucose:glycoprote 99.1 8.6E-11 1.9E-15 134.0 6.0 255 185-481 1177-1442(1470)
23 COG5597 Alpha-N-acetylglucosam 97.9 4.8E-06 1E-10 84.1 3.1 154 300-471 155-341 (368)
24 PF03407 Nucleotid_trans: Nucl 94.0 0.16 3.5E-06 48.7 7.1 140 298-462 49-202 (212)
25 PLN03182 xyloglucan 6-xylosylt 93.5 0.48 1E-05 50.5 10.0 163 294-481 179-377 (429)
26 PF11051 Mannosyl_trans3: Mann 83.8 2.7 5.8E-05 42.5 6.5 35 303-337 80-114 (271)
27 KOG1928 Alpha-1,4-N-acetylgluc 83.2 1.8 3.8E-05 45.9 5.0 32 300-335 228-259 (409)
28 COG4575 ElaB Uncharacterized c 82.4 5.8 0.00013 34.6 7.0 75 61-139 11-86 (104)
29 PF05637 Glyco_transf_34: gala 79.3 1.2 2.6E-05 44.3 2.2 23 311-333 74-96 (239)
30 PRK10132 hypothetical protein; 74.3 17 0.00037 32.0 7.7 76 61-140 15-90 (108)
31 PF10819 DUF2564: Protein of u 71.9 16 0.00035 30.3 6.4 71 65-136 6-78 (79)
32 PLN03181 glycosyltransferase; 70.2 27 0.00059 37.8 9.4 35 294-329 180-214 (453)
33 cd02514 GT13_GLCNAC-TI GT13_GL 62.7 27 0.00058 36.7 7.6 114 191-335 3-119 (334)
34 PF03071 GNT-I: GNT-I family; 62.5 18 0.00038 39.4 6.4 118 189-336 94-214 (434)
35 PF11464 Rbsn: Rabenosyn Rab b 60.9 37 0.0008 25.0 5.8 39 41-79 1-39 (42)
36 KOG1950 Glycosyl transferase, 60.1 12 0.00027 39.5 4.7 149 311-468 122-288 (369)
37 PRK10404 hypothetical protein; 57.2 52 0.0011 28.6 7.3 80 57-140 4-84 (101)
38 cd02515 Glyco_transf_6 Glycosy 53.5 2.3E+02 0.005 29.0 12.1 119 309-439 119-247 (271)
39 PF10073 DUF2312: Uncharacteri 52.9 43 0.00093 27.6 5.6 43 65-119 4-46 (74)
40 cd00761 Glyco_tranf_GTA_type G 47.5 1.3E+02 0.0027 25.1 8.3 41 195-237 5-45 (156)
41 PF15290 Syntaphilin: Golgi-lo 46.6 31 0.00068 35.3 4.7 41 90-130 119-170 (305)
42 PF03414 Glyco_transf_6: Glyco 46.5 98 0.0021 32.6 8.5 122 306-439 181-312 (337)
43 PF06103 DUF948: Bacterial pro 43.8 91 0.002 25.9 6.6 60 65-132 22-81 (90)
44 PF04765 DUF616: Protein of un 43.3 38 0.00083 35.2 4.9 45 303-347 142-188 (305)
45 PRK13694 hypothetical protein; 42.7 75 0.0016 26.7 5.6 44 64-119 11-54 (83)
46 COG1842 PspA Phage shock prote 42.6 3.5E+02 0.0077 26.8 11.5 84 52-147 75-158 (225)
47 KOG3232 Vacuolar assembly/sort 42.5 1.7E+02 0.0036 28.2 8.5 115 34-159 36-156 (203)
48 PHA01346 hypothetical protein 41.9 1.1E+02 0.0023 22.7 5.6 45 60-108 5-49 (53)
49 PF04488 Gly_transf_sug: Glyco 40.4 14 0.00031 31.4 1.2 36 295-334 61-97 (103)
50 PF05957 DUF883: Bacterial pro 39.4 1.4E+02 0.003 25.0 7.1 75 62-140 2-77 (94)
51 TIGR02977 phageshock_pspA phag 39.4 2.5E+02 0.0054 27.4 9.9 104 33-138 28-135 (219)
52 PRK12302 bssR biofilm formatio 36.7 1.1E+02 0.0023 27.0 5.9 70 50-119 23-98 (127)
53 PF10799 YliH: Biofilm formati 31.9 2E+02 0.0044 25.7 6.8 83 33-119 2-98 (127)
54 COG3750 Uncharacterized protei 29.3 3.4E+02 0.0074 22.7 8.3 47 64-122 13-59 (85)
55 KOG0994 Extracellular matrix g 28.9 2.8E+02 0.0061 34.1 9.3 27 55-81 1525-1551(1758)
56 PF04012 PspA_IM30: PspA/IM30 28.5 4.8E+02 0.01 25.1 9.9 102 33-136 27-132 (221)
57 PF08664 YcbB: YcbB domain; I 28.4 2.6E+02 0.0057 25.6 7.3 59 90-150 15-87 (134)
58 PF00611 FCH: Fes/CIP4, and EF 28.0 2.6E+02 0.0057 22.4 6.8 24 115-138 64-87 (91)
59 PF03314 DUF273: Protein of un 26.4 42 0.0009 33.2 1.9 24 306-329 34-57 (222)
60 PF04508 Pox_A_type_inc: Viral 26.2 84 0.0018 20.2 2.6 17 65-81 4-20 (23)
61 PF10153 DUF2361: Uncharacteri 25.3 53 0.0011 29.3 2.2 42 66-109 1-42 (114)
62 PF09543 DUF2379: Protein of u 24.2 1.7E+02 0.0037 26.3 5.1 49 36-84 30-80 (121)
63 PRK15384 type III secretion sy 23.3 42 0.00092 33.8 1.3 23 315-337 217-239 (336)
64 PRK15383 type III secretion sy 23.2 44 0.00096 33.7 1.4 23 315-337 220-242 (335)
65 PRK15382 non-LEE encoded effec 23.0 45 0.00098 33.6 1.5 23 315-337 212-234 (326)
66 PRK10807 paraquat-inducible pr 22.6 6E+02 0.013 28.6 10.3 17 29-45 406-422 (547)
67 COG4585 Signal transduction hi 22.6 4E+02 0.0087 27.5 8.6 21 150-170 272-292 (365)
68 PF10146 zf-C4H2: Zinc finger- 22.5 4.9E+02 0.011 25.9 8.7 94 49-152 19-112 (230)
69 PRK10698 phage shock protein P 22.5 7.2E+02 0.016 24.4 9.9 102 33-136 28-133 (222)
70 PLN02939 transferase, transfer 22.0 3.6E+02 0.0077 32.6 8.7 68 67-135 298-370 (977)
71 PF11932 DUF3450: Protein of u 21.4 4.8E+02 0.011 25.8 8.5 137 27-171 47-201 (251)
72 COG0836 {ManC} Mannose-1-phosp 21.3 40 0.00086 35.3 0.7 22 372-393 188-209 (333)
73 PRK10807 paraquat-inducible pr 20.1 2.6E+02 0.0057 31.4 6.9 40 90-133 475-514 (547)
74 smart00055 FCH Fes/CIP4 homolo 20.0 3.4E+02 0.0073 21.8 6.0 26 111-136 60-85 (87)
No 1
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=4.3e-140 Score=1107.20 Aligned_cols=486 Identities=76% Similarity=1.246 Sum_probs=470.8
Q ss_pred cccccccchhhhcccccccccccChhhHHHHHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 011023 10 LMEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPIT 89 (495)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (495)
+.+++++.+++..+|+|||+|++++|+++|+|||||||||||++|||++||++|+|||++||||+||+||+|++|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~ 127 (534)
T PLN02742 48 LSERNYRKEEVNHEGLNFTEEMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPIT 127 (534)
T ss_pred CccccccccccccccccchhhhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCc
Q 011023 90 LDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSK 169 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~ 169 (495)
+++++++|++|+++|++||+++|||+++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||+++
T Consensus 128 ~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~ 207 (534)
T PLN02742 128 VEEAEPIIRDLAALIYQAQDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNP 207 (534)
T ss_pred chhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEE
Q 011023 170 HIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEV 249 (495)
Q Consensus 170 ~~~~~~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v 249 (495)
+++++.++++++++|+||+++|||+|||||+|++||||||+.|+++|+++|||||||++++.+|++||.+|++++++|+|
T Consensus 208 ~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V 287 (534)
T PLN02742 208 KLQRKAEEKRNSPRLVDNNLYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEV 287 (534)
T ss_pred hhhhccccccccccccCCCcceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEE
Confidence 99877777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccchhHHHhhhcccccceeccccccc-ccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeecc
Q 011023 250 QNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDL-RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQK 328 (495)
Q Consensus 250 ~~i~~f~wl~~~y~pvl~~l~~~~~~~~~f~~~~~~-~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~ 328 (495)
+++++|+|++.+|+||++|+++++++.+||+..... ..+.++|+|+|+|+++|+||+||++||+++||||||+|+||++
T Consensus 288 ~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~ 367 (534)
T PLN02742 288 QKIEEFSWLNASYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQK 367 (534)
T ss_pred EEeccccccccccchHHHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecC
Confidence 999999999999999999999999999999876632 3677899999999999999999999999999999999999999
Q ss_pred CChhhhcCCCCCCeeeeecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCC
Q 011023 329 DLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNAD 408 (495)
Q Consensus 329 DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d 408 (495)
||++||++||+|+++|||+||...++++..|+||++|.++.+|+++.||||+|||||||++||++++|+.++.|++.+.+
T Consensus 368 DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~ 447 (534)
T PLN02742 368 DLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVD 447 (534)
T ss_pred ChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccc
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccCCCcHHHhhhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCc
Q 011023 409 RTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPY 488 (495)
Q Consensus 409 ~~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf 488 (495)
..+|++|++|+++++|+|++.+||.+||+.++||+++++...+++|+||||+|++|||.+.++++|+++|++|+++++||
T Consensus 448 ~~l~d~gaLpp~LLaF~g~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~f 527 (534)
T PLN02742 448 RTLWKLGTLPPGLLTFYGLTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPY 527 (534)
T ss_pred cccccccccchHHHHHcCcceecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHH
Confidence 89999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred hhcccCC
Q 011023 489 VQDCETS 495 (495)
Q Consensus 489 ~~~c~~~ 495 (495)
+++||||
T Consensus 528 l~~Cni~ 534 (534)
T PLN02742 528 LQQCNFH 534 (534)
T ss_pred HHhCCCC
Confidence 9999997
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=1.8e-138 Score=1104.51 Aligned_cols=480 Identities=46% Similarity=0.839 Sum_probs=461.9
Q ss_pred ccccccchhhhcccccccccccChhhHHHHHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 011023 11 MEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITL 90 (495)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (495)
.++....++...+.-.-|+|.+++|++||+|||||||||||++|||++||++|+|||++||||+||+||+|++|++| |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~l--p 235 (639)
T PLN02829 158 SEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDL--P 235 (639)
T ss_pred ccccccccccccccccccccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCC--C
Confidence 34455566677777788999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCch
Q 011023 91 DEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKH 170 (495)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~~ 170 (495)
+++.++|++|+++|++||+++|||+++++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||++++
T Consensus 236 ~~~~~~~~~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~ 315 (639)
T PLN02829 236 KNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNS 315 (639)
T ss_pred hhHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEE
Q 011023 171 IQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQ 250 (495)
Q Consensus 171 ~~~~~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~ 250 (495)
+++++ |++++|+||+++|||+|||||+|+||||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|+|+
T Consensus 316 ~~~~~---p~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~ 392 (639)
T PLN02829 316 SEQQF---PNQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQ 392 (639)
T ss_pred hhccC---CChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEE
Confidence 98888 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccchhHHHhhhcccccceeccccccc-ccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccC
Q 011023 251 NIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDL-RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKD 329 (495)
Q Consensus 251 ~i~~f~wl~~~y~pvl~~l~~~~~~~~~f~~~~~~-~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~D 329 (495)
+||+|+|++++|+||++||+++.+..|||...+.. ..++++|+|+|+|+++|+|||||++||+++||||||+||||++|
T Consensus 393 nie~f~wln~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgD 472 (639)
T PLN02829 393 NIEEFTWLNSSYSPVLKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKD 472 (639)
T ss_pred ehhhcccccccccHHHHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCC
Confidence 99999999999999999999999999999875543 37789999999999999999999999999999999999999999
Q ss_pred ChhhhcCCCCCCeeeeecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCc
Q 011023 330 LTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADR 409 (495)
Q Consensus 330 LseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~ 409 (495)
|++||++||+|+++|||+||...|+++..+++|++|.+..+|+++.||||+|||||||++||++++|++++.|++.+.++
T Consensus 473 LseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r 552 (639)
T PLN02829 473 LTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDR 552 (639)
T ss_pred hHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCC
Confidence 99999999999999999999988889999999999998889999999999999999999999999999999999988888
Q ss_pred cccccCCCcHHHhhhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCch
Q 011023 410 TLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYV 489 (495)
Q Consensus 410 ~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~ 489 (495)
.+|++|++|+++++|+|++++||.+||++|+||++++..+.+++|+||||+|++|||++.++++|+++|.+|+++++||+
T Consensus 553 ~L~dlgaLPp~Ll~F~g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl 632 (639)
T PLN02829 553 QLWKLGTLPPGLITFWKRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYL 632 (639)
T ss_pred ccccccCCChHHHHhcCceEecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHH
Confidence 89999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred hcccCC
Q 011023 490 QDCETS 495 (495)
Q Consensus 490 ~~c~~~ 495 (495)
++||||
T Consensus 633 ~~Cni~ 638 (639)
T PLN02829 633 RECNIN 638 (639)
T ss_pred HhCCCC
Confidence 999996
No 3
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=2e-136 Score=1087.06 Aligned_cols=463 Identities=51% Similarity=0.879 Sum_probs=448.7
Q ss_pred cccccChhhHHHHHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHh
Q 011023 28 TKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTA 107 (495)
Q Consensus 28 ~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (495)
.++...+|++||+|||||||||||++|||++||++|+|||++||||+||+||+|++|+|| |+++.++|++|+++|++|
T Consensus 189 e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dl--p~~~~~k~~~M~~~l~~a 266 (657)
T PLN02910 189 DYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAEL--HSSALDQAKAMGHVLSIA 266 (657)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccccccc--CchHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCchhhccccccCCCCCccCC
Q 011023 108 QDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDN 187 (495)
Q Consensus 108 ~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~ 187 (495)
|+++|||+++++||||||+++||++++|++|++|++||||+|+|||||||+||||+|||+++++++++ +++++|+||
T Consensus 267 k~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~---p~~~~l~dp 343 (657)
T PLN02910 267 KDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDY---VNKKKLEDP 343 (657)
T ss_pred HhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccC---CChhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 577899999
Q ss_pred CceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHH
Q 011023 188 NLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 267 (495)
Q Consensus 188 ~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~ 267 (495)
+++|||+|||||+|+|||||||+.|+++|+++|||||||++|+.+|++||.+|++++|+|+|++||+|+|++++|+||++
T Consensus 344 ~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl~ 423 (657)
T PLN02910 344 SLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLR 423 (657)
T ss_pred cceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccceeccccccc----c-cCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCe
Q 011023 268 QLLNADSRAIYFGEYQDL----R-VEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNV 342 (495)
Q Consensus 268 ~l~~~~~~~~~f~~~~~~----~-~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~v 342 (495)
|++++.++.+||..+... + .++++|+|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|++
T Consensus 424 qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v 503 (657)
T PLN02910 424 QLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMV 503 (657)
T ss_pred HHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCce
Confidence 999999999999864432 2 57899999999999999999999999999999999999999999999999999999
Q ss_pred eeeecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHh
Q 011023 343 NGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALL 422 (495)
Q Consensus 343 iaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl 422 (495)
+|||+||...|+++..+++|++|.+.++|+++.||||+|||||||++||++++|+.++.|++.+.+..+|++|+||++++
T Consensus 504 ~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpgLL 583 (657)
T PLN02910 504 NGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLI 583 (657)
T ss_pred EEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChHHH
Confidence 99999999888899999999999998999999999999999999999999999999999999998899999999999999
Q ss_pred hhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccCC
Q 011023 423 AFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 495 (495)
Q Consensus 423 ~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~~ 495 (495)
+|+|++++||.+||++|+||++.+....+++|+||||+|++|||.++++++|+++|.+|+++++||+++|||+
T Consensus 584 vF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 584 TFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred HHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCCCC
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999996
No 4
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=4e-126 Score=1016.23 Aligned_cols=454 Identities=34% Similarity=0.599 Sum_probs=423.6
Q ss_pred cccccChhhHHHHHhHHHHHHHHH-HHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 011023 28 TKEILSATSFSRQLAEQIILAKAY-VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFT 106 (495)
Q Consensus 28 ~~~~~~~~~~~~~~~d~~~~a~~y-~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (495)
.++...+|++||+||||||||||| ++|||++||++|+|||++||||+||+||+|++|+|+ |+++.++|++|+++|++
T Consensus 173 e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dl--p~~~~~~~~~m~~~~~~ 250 (629)
T PLN02769 173 EHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADL--PPFIQKKLEKMEQTIAR 250 (629)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccC--ChhHHHHHHHHHHHHHH
Confidence 456678999999999999999998 799999999999999999999999999999999999 99999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCchhhccccccCCCCCccC
Q 011023 107 AQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVD 186 (495)
Q Consensus 107 ~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d 186 (495)
||++.|||++|++||||||++||||++++++|++|++||||+|+|||||||+||||+|||+++++++++ +++++|+|
T Consensus 251 ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~---~~~~~l~d 327 (629)
T PLN02769 251 AKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMED---SNSEKFSD 327 (629)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhccC---CchhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 57789999
Q ss_pred CCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 187 NNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 187 ~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
|+++|||+|||||+|+|||||||+.|+++|+++|||||||.+|+.+|++||.+|++++|+|+|+++|+|+|.+. .+|++
T Consensus 328 ~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~-~~~~~ 406 (629)
T PLN02769 328 PSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDL-DKFAL 406 (629)
T ss_pred CccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeeccc-chHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999764 58999
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 346 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV 346 (495)
+|+++.....++|.... ....++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+++|||
T Consensus 407 ~~l~~~~~~~~~~~~~~--~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAV 484 (629)
T PLN02769 407 KQLSLPEEFRVSFRSVD--NPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAV 484 (629)
T ss_pred HhhccchhhhhhhccCC--CCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEe
Confidence 99998876555554332 2234566799999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHc-C-CccccccCCCcHHHhhh
Q 011023 347 ETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-A-DRTLWKLGTLPPALLAF 424 (495)
Q Consensus 347 ~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n-~-d~~l~~~gdq~~~nl~F 424 (495)
+||...+.++..|++ ..+|+++.||||+|||||||++||++++++++++|++.+ . +...|++++||++|++|
T Consensus 485 edc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF 558 (629)
T PLN02769 485 QFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTF 558 (629)
T ss_pred hhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHh
Confidence 999866666555544 346888999999999999999999999999999998764 3 35789999999999999
Q ss_pred cCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccCC
Q 011023 425 YGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 495 (495)
Q Consensus 425 ~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~~ 495 (495)
+|++++||.+||++++||++++..+.+++|+||||+|++|||++.++++|+++|++|+++++||+++||||
T Consensus 559 ~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cni~ 629 (629)
T PLN02769 559 QDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECNVN 629 (629)
T ss_pred cCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCCCC
Confidence 99999999999999999998888788999999999999999999999999999999999999999999997
No 5
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=1.4e-122 Score=985.14 Aligned_cols=453 Identities=39% Similarity=0.705 Sum_probs=428.4
Q ss_pred hhhhcccccccccccChhhHHHHHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHH
Q 011023 18 EQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPII 97 (495)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (495)
+++..+.-.-|.....+|++||+|||||||||||++|||++||++|+|||++||||+||+||+|+.|+++ |+++.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~l--p~~~~~~~ 224 (603)
T PLN02718 147 PTVKHEKNTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDL--SKSALQRM 224 (603)
T ss_pred CcccccccCcCCcccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCC--CHhHHHHH
Confidence 3344443345666778999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCchhhccccc
Q 011023 98 SSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASE 177 (495)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~~~~~~~~~ 177 (495)
++|+++|++||+++|||++|++|||||++++||++++|++|++|++||||+|+|||||||+||||+|||+++++++++
T Consensus 225 ~~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~-- 302 (603)
T PLN02718 225 KSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQL-- 302 (603)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEecccccc
Q 011023 178 RRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSW 257 (495)
Q Consensus 178 ~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~w 257 (495)
|++++|+||+++|||+++||++++||+|+|++.|+++|++++||||||++++++|+.||..++..+++|+|+++++|.|
T Consensus 303 -~~~~~l~d~~~~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~ 381 (603)
T PLN02718 303 -PNQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNV 381 (603)
T ss_pred -CChhhccCCcceeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhcc
Confidence 5778999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ccccchhHHHhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCC
Q 011023 258 LNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLD 337 (495)
Q Consensus 258 l~~~y~pvl~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iD 337 (495)
++.+|+++++++++ .+++|+|+++|+||+||++||+++||||||+|+||++||++||++|
T Consensus 382 lp~~~~~~lk~l~s--------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iD 441 (603)
T PLN02718 382 LPADYNSLLMKQNS--------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLD 441 (603)
T ss_pred ccccchhhhhhccc--------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCC
Confidence 99999988876543 2368999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeecchhh---hhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCcccccc
Q 011023 338 LHGNVNGAVETCLE---AFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKL 414 (495)
Q Consensus 338 L~g~viaAV~d~~~---~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~ 414 (495)
|+|+++|||+||.. .++++..++||++|++.++|+++.||||+|||||||++||++++++++++|++.+.++.+|++
T Consensus 442 l~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dq 521 (603)
T PLN02718 442 MKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKA 521 (603)
T ss_pred CCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCc
Confidence 99999999999975 355677789999999888999999999999999999999999999999999998877789999
Q ss_pred CCCcHHHhhhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccC
Q 011023 415 GTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCET 494 (495)
Q Consensus 415 gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~ 494 (495)
|++|++|++|+|++++||.+||++++||++++....+++|+||||+|++|||++.+++.|+++|.+|+++++||+++|||
T Consensus 522 daLpp~LlvF~gri~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~ 601 (603)
T PLN02718 522 GSLPIGWLTFYNQTVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNI 601 (603)
T ss_pred ccccHHHHHhcCceeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCC
Confidence 99999999999999999999999999998887777899999999999999999999999999999999999999999999
Q ss_pred C
Q 011023 495 S 495 (495)
Q Consensus 495 ~ 495 (495)
|
T Consensus 602 ~ 602 (603)
T PLN02718 602 H 602 (603)
T ss_pred C
Confidence 6
No 6
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=4.6e-116 Score=925.54 Aligned_cols=460 Identities=45% Similarity=0.823 Sum_probs=427.0
Q ss_pred cChhhHHHHHhHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHhhhhhc---------------CCCCCCCchH
Q 011023 32 LSATSFSRQLAEQIILAKAYVIIAKEHN--NHRLAWELSKKIRSCQLLLSKAAMR---------------GEPITLDEAE 94 (495)
Q Consensus 32 ~~~~~~~~~~~d~~~~a~~y~~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 94 (495)
++.|.+.||..|+..++.||++.|+..+ +++++|-+..--+++..+.++++.. .++ |+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (559)
T PLN02523 78 TRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQF--EKEVK 155 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhc--chhHH
Confidence 3669999999999999999999999887 5666665555555565555544332 234 99999
Q ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhCchhhcc
Q 011023 95 PIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDL 174 (495)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~~~~~~~ 174 (495)
+++|.|+++|++||+ .|||+++++|||+|++++|||++++++|++|++||||+|+|||||||+||||+|||++++++++
T Consensus 156 ~~~k~~~~~~~~a~~-~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~ 234 (559)
T PLN02523 156 ERVKVARQMIAESKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKD 234 (559)
T ss_pred HHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhc
Confidence 999999999999996 9999999999999999999999999999999999999999999999999999999999988665
Q ss_pred ccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccc
Q 011023 175 ASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEE 254 (495)
Q Consensus 175 ~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~ 254 (495)
. +++++++++||+++|||+|||||+|++|+|+||+.|+++|++++||||||++|+++|++||..+++++++|+|++||+
T Consensus 235 ~-~~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Ied 313 (559)
T PLN02523 235 E-GKPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVED 313 (559)
T ss_pred c-CCCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeeh
Confidence 5 336789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhHHHhhhcccccceecccccc----cccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCC
Q 011023 255 FSWLNASYAPIVKQLLNADSRAIYFGEYQD----LRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDL 330 (495)
Q Consensus 255 f~wl~~~y~pvl~~l~~~~~~~~~f~~~~~----~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DL 330 (495)
|+|++++|+|+++|+++..++.+||..... ...++++|+|+|+|+++|+||+||++||+++||||||+||||++||
T Consensus 314 f~~ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DL 393 (559)
T PLN02523 314 YKFLNSSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDL 393 (559)
T ss_pred hhhcccccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCH
Confidence 999999999999999999999999975432 2256789999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCeeeeecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCcc
Q 011023 331 TPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRT 410 (495)
Q Consensus 331 seLw~iDL~g~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~ 410 (495)
++||++||+|+++|||+||...++++..+++|++|.++.+|+++.||||+|||||||++||++++|++++.|.+.+.+..
T Consensus 394 seLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~ 473 (559)
T PLN02523 394 TGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRT 473 (559)
T ss_pred HHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccc
Confidence 99999999999999999998778899999999999998899999999999999999999999999999999998888889
Q ss_pred ccccCCCcHHHhhhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchh
Q 011023 411 LWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQ 490 (495)
Q Consensus 411 l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~ 490 (495)
+|++|++|++|++|+|++++||.+||++++||+++++.+.+++|+||||+|++|||++.++++|+++|++|+++++||++
T Consensus 474 l~DqdaLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~ 553 (559)
T PLN02523 474 LWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQ 553 (559)
T ss_pred cccccccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred cccCC
Q 011023 491 DCETS 495 (495)
Q Consensus 491 ~c~~~ 495 (495)
+||||
T Consensus 554 ~Cn~~ 558 (559)
T PLN02523 554 ACNFG 558 (559)
T ss_pred hCCCC
Confidence 99997
No 7
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=1.4e-114 Score=911.84 Aligned_cols=424 Identities=38% Similarity=0.778 Sum_probs=391.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011023 61 HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 140 (495)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 140 (495)
.++.+|+.+-+.| -.-++++.|+++ |+++++.++ +||+.+|||+++++|||+|++++||+++++++|++
T Consensus 89 ~~~~~~~~~~l~~--~~~~~~~~d~~l--p~s~~~~~~-------~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 157 (533)
T PLN02870 89 ERLVRDFYKILNE--VNTEEIPDGLKL--PDSFSQLVS-------DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAEL 157 (533)
T ss_pred hhhHHHHHHHHHH--hccccccccccC--ChhHHHHHH-------HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888776666 345788889999 877777666 77889999999999999999999999999999999
Q ss_pred HhhhhhccccCccccchhhHhHHHHHhCchhhccccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEE
Q 011023 141 LFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMV 220 (495)
Q Consensus 141 ~~~~la~~~~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~ 220 (495)
|++||||+|+|||||||+||||+|||+++++++++|++++.++|+||+++|||+|||||+|+|||||||+.|+++|+++|
T Consensus 158 ~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~V 237 (533)
T PLN02870 158 MNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIV 237 (533)
T ss_pred HHHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceE
Confidence 99999999999999999999999999999999999877778899999999999999999999999999999999999999
Q ss_pred EEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhhhcccccc-eeccccccc-----------ccC
Q 011023 221 FHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRA-IYFGEYQDL-----------RVE 288 (495)
Q Consensus 221 FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l~~~~~~~-~~f~~~~~~-----------~~~ 288 (495)
||||||++|+.+|++||.+|++++|+|+|++||+|+||+++|+||++|++++.+.. +||...+.. ..+
T Consensus 238 FHvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (533)
T PLN02870 238 FHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASK 317 (533)
T ss_pred EEEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999998854 555433321 135
Q ss_pred CCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhh-----hhhhhhcccCC
Q 011023 289 PKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEA-----FHRYYKYLNFS 363 (495)
Q Consensus 289 l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~-----~~r~~~~ln~s 363 (495)
+++|+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||... .++++.|+||+
T Consensus 318 l~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs 397 (533)
T PLN02870 318 LQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFS 397 (533)
T ss_pred cccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccc
Confidence 7889999999999999999999999999999999999999999999999999999999999642 35778899999
Q ss_pred CcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcC--CccccccCCCcHHHhhhcCCeeeccCcceeeccC
Q 011023 364 NPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNA--DRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLG 441 (495)
Q Consensus 364 ~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~--d~~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lg 441 (495)
+|.+..+|+++.||||||||||||++||++++++++++|++++. +..+|++|++|++|++|+|++++||.+||++++|
T Consensus 398 ~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLg 477 (533)
T PLN02870 398 HPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLG 477 (533)
T ss_pred cchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCC
Confidence 99999999999999999999999999999999999999998764 3478999999999999999999999999999999
Q ss_pred CCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccCC
Q 011023 442 YDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 495 (495)
Q Consensus 442 y~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~~ 495 (495)
|+.....+.+++|+||||+|++|||++.++++|+++|.+|+++++||+++|||+
T Consensus 478 y~~~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 478 YQSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CcccccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 987766678899999999999999999999999999999999999999999995
No 8
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=2.5e-113 Score=905.71 Aligned_cols=423 Identities=37% Similarity=0.672 Sum_probs=392.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcc
Q 011023 69 KKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAE 148 (495)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~ 148 (495)
+-.+|++|+|++++.|.++ |+.+++++++|+++++++++.+|||+++++|||||++++||+++++++|++|++||||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~ 170 (535)
T PLN02867 93 KLREELTRALVEAKEQDDG--GRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASH 170 (535)
T ss_pred HHHHHHHHHHHHhhhcccc--CcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccchhhHhHHHHHhCchhhccccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCC
Q 011023 149 SLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGV 228 (495)
Q Consensus 149 ~~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~i 228 (495)
|+|||||||+||||+|||+++++++++|++++.++|+||+++|||+|||||+|+||||||++.|+++|+++|||||||++
T Consensus 171 t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ 250 (535)
T PLN02867 171 GIPKSLHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKK 250 (535)
T ss_pred hcCCCccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCcc
Confidence 99999999999999999999999999987778889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhhhccccc-c----------eecccccccccCCCCCCCCCc
Q 011023 229 TYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSR-A----------IYFGEYQDLRVEPKLRNPRYL 297 (495)
Q Consensus 229 s~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l~~~~~~-~----------~~f~~~~~~~~~l~~r~~~~~ 297 (495)
|+.+|++||.+|++++|+|||++||+|+|++++|+|++++++++.+. . +||+.. ...++++++|+|+
T Consensus 251 ny~aM~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pkyl 328 (535)
T PLN02867 251 TYTPMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGT--HKRSLEALSPSCL 328 (535)
T ss_pred ccHHHHHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccc--cccchhhcChhhh
Confidence 99999999999999999999999999999999999999999987643 1 233222 2246788999999
Q ss_pred chhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecch--hhh---hhhhhhcccCCCcccccCCC
Q 011023 298 SLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETC--LEA---FHRYYKYLNFSNPIISSKFD 372 (495)
Q Consensus 298 S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~--~~~---~~r~~~~ln~s~p~i~~~f~ 372 (495)
|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||.|+ ... .+++..|+||++|.+..+|+
T Consensus 329 S~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~ 408 (535)
T PLN02867 329 SLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLD 408 (535)
T ss_pred hHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCC
Confidence 9999999999999999999999999999999999999999999999999774 221 24677899999999888999
Q ss_pred CCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCC--ccccccCCCcHHHhhhcCCeeeccCcceeeccCCCCcc-Ccc
Q 011023 373 PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNAD--RTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNI-DNR 449 (495)
Q Consensus 373 ~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d--~~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v-~~~ 449 (495)
++.||||||||||||++||++++++++++|++.+.+ ..+|+++.+|+++++|+|++++||.+||+.++||+... ..+
T Consensus 409 p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~ 488 (535)
T PLN02867 409 QERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPRE 488 (535)
T ss_pred CCCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhh
Confidence 999999999999999999999999999999988754 46899999999999999999999999999999987542 235
Q ss_pred ccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccCC
Q 011023 450 LIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 495 (495)
Q Consensus 450 ~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~~ 495 (495)
.+++|+||||+|++|||+++++++|+++|.+|++++++|+|+|||+
T Consensus 489 ~i~~paIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 489 ILESAAVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred hcCCcEEEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 5789999999999999999999999999999999999999999995
No 9
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=4.2e-113 Score=900.82 Aligned_cols=423 Identities=38% Similarity=0.739 Sum_probs=387.0
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccc
Q 011023 70 KIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAES 149 (495)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~ 149 (495)
..+++-|+|-+.....++ +.-.+..+++++++.++|..+|||.+|++|||||++++||+++++|+|+.+++||||+|
T Consensus 91 ~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t 167 (534)
T PLN02659 91 VPEVMYQVLEQPLSNDEL---KGRSDIPQTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSS 167 (534)
T ss_pred cHHHHHHHHHhhhccccc---CCccccchHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566677663333333 22345578899999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhhHhHHHHHhCchhhccccccCCCCCccCCCceeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCC
Q 011023 150 LPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVT 229 (495)
Q Consensus 150 ~pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is 229 (495)
+|||||||+||||+|||+++++++++|++++.++|+||+++|||+|||||+|+|||||||+.|+++|+++|||||||++|
T Consensus 168 ~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~n 247 (534)
T PLN02659 168 IPKQLHCLALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKT 247 (534)
T ss_pred CCCCccccchhhHHHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccc
Confidence 99999999999999999999999999877778899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhhhcccccceecccccc----------c--ccCCCCCCCCCc
Q 011023 230 YGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQD----------L--RVEPKLRNPRYL 297 (495)
Q Consensus 230 ~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~~f~~~~~----------~--~~~l~~r~~~~~ 297 (495)
+.+|++||.+|++++|+|||++||+|+||+++|+||++|+++..+..+||..+.. . ..++++|+|+|+
T Consensus 248 y~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~yl 327 (534)
T PLN02659 248 YSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYN 327 (534)
T ss_pred cHHHHHHHhhCCCccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccce
Confidence 9999999999999999999999999999999999999999998888888864331 1 135678999999
Q ss_pred chhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhh--h---hhhhhcccCCCcccccCCC
Q 011023 298 SLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEA--F---HRYYKYLNFSNPIISSKFD 372 (495)
Q Consensus 298 S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~--~---~r~~~~ln~s~p~i~~~f~ 372 (495)
|+++|+||+||++||+++||||||+||||++||++||++||+|+++|||+||... + +++..++++++|.+..+|+
T Consensus 328 S~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn 407 (534)
T PLN02659 328 SVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFD 407 (534)
T ss_pred eHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccC
Confidence 9999999999999999999999999999999999999999999999999999632 2 5778899999999988999
Q ss_pred CCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcC--CccccccCCCcHHHhhhcCCeeeccCcceeeccCCCCccCccc
Q 011023 373 PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNA--DRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRL 450 (495)
Q Consensus 373 ~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~--d~~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~ 450 (495)
++.||||+|||||||++||++++++++++|++++. +..+|++|++|++|++|+|++++||.+||+.++||+.+...+.
T Consensus 408 ~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~ 487 (534)
T PLN02659 408 PNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLAD 487 (534)
T ss_pred ccccceecceeEeeHHHHHhcChHHHHHHHHHhcccccccccccccchHHHHHhcCCEEECChhheecCCcccccccccc
Confidence 99999999999999999999999999999998764 4578899999999999999999999999999999987766677
Q ss_pred cCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchhcccCC
Q 011023 451 IESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 495 (495)
Q Consensus 451 i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~~c~~~ 495 (495)
+++|+||||+|++|||.++++++|+++|.+|+++++||+++|||+
T Consensus 488 i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 488 AESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred cCCcEEEEECCCCCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 899999999999999999999999999999999999999999996
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=1.3e-57 Score=453.18 Aligned_cols=255 Identities=52% Similarity=0.944 Sum_probs=231.9
Q ss_pred eeEEEEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhh
Q 011023 190 YHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQL 269 (495)
Q Consensus 190 ~hia~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l 269 (495)
+|||+++||.++++|+++|++.|+++|.+++|||+||+++.++|++||..++.++++|+|++++++.|.+..+.+.++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999988999999999999999999999999999999999999999999999999999999988887777888888
Q ss_pred hcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecch
Q 011023 270 LNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETC 349 (495)
Q Consensus 270 ~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~ 349 (495)
++... ...++.++++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+|
T Consensus 81 ~~~~~-----------~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d- 148 (257)
T cd06429 81 ESEAD-----------TSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET- 148 (257)
T ss_pred hcccc-----------ccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-
Confidence 76431 134566678999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCc--cccccCCCcHHHhhhcCC
Q 011023 350 LEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADR--TLWKLGTLPPALLAFYGL 427 (495)
Q Consensus 350 ~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~--~l~~~gdq~~~nl~F~~~ 427 (495)
|||||||||||++||++++++++.+|++.+.++ .++++++||++|++|+|+
T Consensus 149 ---------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~ 201 (257)
T cd06429 149 ---------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGL 201 (257)
T ss_pred ---------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCe
Confidence 589999999999999999999999999876543 568889999999999999
Q ss_pred eeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHh
Q 011023 428 TEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVN 483 (495)
Q Consensus 428 i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~ 483 (495)
+..||.+||++++||+.......+++|+||||+|+.|||...+.++|+++||+|+.
T Consensus 202 ~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 202 TSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred eEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 99999999999888875544456789999999999999999998999999999973
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.3e-44 Score=372.74 Aligned_cols=263 Identities=18% Similarity=0.256 Sum_probs=199.7
Q ss_pred CCceeEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchh
Q 011023 187 NNLYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAP 264 (495)
Q Consensus 187 ~~~~hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~p 264 (495)
+..+|||+++|+ +.+++|+|+|++.|+++ ..++|||++++++.+.++++-......+..|++..++. ++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~------- 93 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ER------- 93 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HH-------
Confidence 467999999996 78999999999999765 46999999999999998876554433355666655432 10
Q ss_pred HHHhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCee
Q 011023 265 IVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVN 343 (495)
Q Consensus 265 vl~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~vi 343 (495)
++ .++ ...++|.++|+||+||++||+ ++||||||+|+||++||++||++|++|+.+
T Consensus 94 -~~--------------------~~~--~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~ 150 (334)
T PRK15171 94 -LK--------------------SLP--STKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEI 150 (334)
T ss_pred -Hh--------------------CCc--ccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeE
Confidence 00 011 135789999999999999995 999999999999999999999999996666
Q ss_pred eee-cchhhhh-hhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHH
Q 011023 344 GAV-ETCLEAF-HRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPAL 421 (495)
Q Consensus 344 aAV-~d~~~~~-~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~n 421 (495)
||| .|+...+ ......++. | ++ ...|||||||||||++||+++++++++++++.+.-...+..+|||++|
T Consensus 151 aav~~d~~~~~~~~~~~~l~~--~----~~--~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN 222 (334)
T PRK15171 151 AAVVAEGDAEWWSKRAQSLQT--P----GL--ASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLN 222 (334)
T ss_pred EEEEeccchhHHHHHHHhcCC--c----cc--cccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHH
Confidence 665 4443211 111222221 1 11 246999999999999999999999999998754211223447999999
Q ss_pred hhhcCCeeeccCcceeecc-CCCC--ccCccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCchh
Q 011023 422 LAFYGLTEPLDRRWHVLGL-GYDM--NIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQ 490 (495)
Q Consensus 422 l~F~~~i~~L~~~WN~~~l-gy~~--~v~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~~ 490 (495)
++|.|++..||.+||++.. .+.. .......++|+||||+|+.|||...+.++++++||+|...| ||..
T Consensus 223 ~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~s-pw~~ 293 (334)
T PRK15171 223 ILLAGKVKFIDAKYNTQFSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEAS-PWKN 293 (334)
T ss_pred HHHcCCeEECCHhhCCccchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhcC-CCCC
Confidence 9999999999999998742 1110 01112346899999999999999888889999999999999 9974
No 12
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=1.4e-41 Score=342.30 Aligned_cols=261 Identities=18% Similarity=0.236 Sum_probs=193.0
Q ss_pred eEEEEeCC-CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhh
Q 011023 191 HFCIFSDN-VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQL 269 (495)
Q Consensus 191 hia~~sDn-vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l 269 (495)
-||++.+| +..++|+|+|++.|+.. .++|||++|+++.+.++.+.......++.|.+..++++. ..
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n~~~--~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~----------~~- 70 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFYRRN--PLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK----------SR- 70 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHcCCC--CEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh----------hh-
Confidence 36667777 68999999999999854 499999999999999998876655668888888775321 00
Q ss_pred hcccccceecccccccccCCCCCCCCCcc-hhhhHHhhhcccccC-CCeEEEEecCeeeccCChhhhcC--CCCC-Ceee
Q 011023 270 LNADSRAIYFGEYQDLRVEPKLRNPRYLS-LLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSL--DLHG-NVNG 344 (495)
Q Consensus 270 ~~~~~~~~~f~~~~~~~~~l~~r~~~~~S-~~~y~Rf~lPellP~-ldKVLYLD~DvVV~~DLseLw~i--DL~g-~via 344 (495)
+. ... ..++| ..+|+||+||++||+ ++||||||+|+||++||++||++ |+.| +++|
T Consensus 71 ---------~~---------~~~-~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a 131 (280)
T cd06431 71 ---------VS---------WIP-NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLG 131 (280)
T ss_pred ---------hc---------cCc-ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEE
Confidence 00 001 12445 348899999999995 99999999999999999999998 6765 5777
Q ss_pred eecchhhhhhhhhhcc-cCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCC-ccccccCCCcHHHh
Q 011023 345 AVETCLEAFHRYYKYL-NFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNAD-RTLWKLGTLPPALL 422 (495)
Q Consensus 345 AV~d~~~~~~r~~~~l-n~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d-~~l~~~gdq~~~nl 422 (495)
||++...-+ .+.. ....| +.....|||||||||||++||+.++++++..+.+++.. ......+|||++|+
T Consensus 132 ~v~~~~~~~---~~~~~~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~ 203 (280)
T cd06431 132 LVENQSDWY---LGNLWKNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNA 203 (280)
T ss_pred Eeccchhhh---hhhhhhccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHH
Confidence 777653211 1100 00011 11123599999999999999999999998766544311 12234689999999
Q ss_pred hhcCC---eeeccCcceeeccCCC-CccCccccCCCeEEEccCCCCCCccCcc-CCCHHHHHHHHhcCCCchhc
Q 011023 423 AFYGL---TEPLDRRWHVLGLGYD-MNIDNRLIESAAVIHFNGNMKPWLKLAI-SRYKPIWDRYVNHSHPYVQD 491 (495)
Q Consensus 423 ~F~~~---i~~L~~~WN~~~lgy~-~~v~~~~i~~a~IIHf~G~~KPW~~~~~-~~y~~~W~~Y~~~t~pf~~~ 491 (495)
+|.++ ++.||.+||++..... ........++|+||||+|+.|||...+. ++|+++|.+|.+++++-+++
T Consensus 204 v~~~~~~~~~~L~~~wN~~~~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 204 VIKQNPFLVYQLPCAWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred HHcCCcceeEECCCccccccCccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 99999 8999999999863211 0100123578999999999999998765 89999999999999887764
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=8.9e-40 Score=322.41 Aligned_cols=237 Identities=19% Similarity=0.240 Sum_probs=181.5
Q ss_pred eeEEEEe-C-C-CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 190 YHFCIFS-D-N-VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 190 ~hia~~s-D-n-vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
|||++++ | | +.+++|+++|+++|+++ .++|||++++++.+..+.+-......+..+++..++.-.+.
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~-------- 70 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSV-------- 70 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcc--------
Confidence 5777654 4 3 67999999999999987 59999999999999888776655445677777765321100
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 346 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV 346 (495)
.... ..+++|..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||
T Consensus 71 ---------------------~~~~-~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav 128 (246)
T cd00505 71 ---------------------DSEH-LKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAA 128 (246)
T ss_pred ---------------------hhhh-hcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEc
Confidence 0000 025778899999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcC
Q 011023 347 ETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG 426 (495)
Q Consensus 347 ~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~ 426 (495)
+||..... ..+... ..+...+.+|||||||||||++||++++.+++..+...+... ...+||+++|.+|++
T Consensus 129 ~d~~~~~~--~~~~~~-----~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~ 199 (246)
T cd00505 129 PDPGDRRE--GKYYRQ-----KRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSS--LSGGDQDLLNTFFKQ 199 (246)
T ss_pred cCchhhhc--cchhhc-----ccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhccc--CccCCcHHHHHHHhc
Confidence 99874211 111000 112334578999999999999999888888876655443322 334789999999999
Q ss_pred C---eeeccCcceeeccCCCCcc--CccccCCCeEEEccCCCCCCc
Q 011023 427 L---TEPLDRRWHVLGLGYDMNI--DNRLIESAAVIHFNGNMKPWL 467 (495)
Q Consensus 427 ~---i~~L~~~WN~~~lgy~~~v--~~~~i~~a~IIHf~G~~KPW~ 467 (495)
+ +.+||.+||++..++.... ..+..++++||||+|+.|||.
T Consensus 200 ~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 200 VPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred CCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 8 9999999999986544221 123578999999999999996
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=1.7e-39 Score=319.83 Aligned_cols=238 Identities=21% Similarity=0.262 Sum_probs=188.6
Q ss_pred eeEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHH
Q 011023 190 YHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 267 (495)
Q Consensus 190 ~hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~ 267 (495)
+|||+++|. ..+++|+++|+++|+++ ..++|||++++++.+.++.+-......+..|++..++. +...
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~---------~~~~ 70 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDN---------DDFK 70 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCH---------HHHh
Confidence 699999996 67999999999999986 46999999999998888766554333466777776542 1110
Q ss_pred hhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeec
Q 011023 268 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVE 347 (495)
Q Consensus 268 ~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~ 347 (495)
..+. ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+++|||+
T Consensus 71 --------------------~~~~-~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~ 129 (248)
T cd04194 71 --------------------FFPA-TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVR 129 (248)
T ss_pred --------------------cCCc-ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEe
Confidence 0000 1357889999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcCC
Q 011023 348 TCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL 427 (495)
Q Consensus 348 d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~~ 427 (495)
||......... .........+||||||||+|+++||+.+++++++++++.+... +..+||+++|.+|+++
T Consensus 130 d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 130 DPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGR--LIYPDQDILNAVLKDK 199 (248)
T ss_pred cccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCc--eeeCChHHHHHHHhCC
Confidence 98754322111 0112334678999999999999999999999999999876542 4457999999999999
Q ss_pred eeeccCcceeeccCCCCcc--------CccccCCCeEEEccCCCCCCcc
Q 011023 428 TEPLDRRWHVLGLGYDMNI--------DNRLIESAAVIHFNGNMKPWLK 468 (495)
Q Consensus 428 i~~L~~~WN~~~lgy~~~v--------~~~~i~~a~IIHf~G~~KPW~~ 468 (495)
+..||.+||++...+.... .....++++||||+|+.|||..
T Consensus 200 ~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~ 248 (248)
T cd04194 200 ILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWNK 248 (248)
T ss_pred eEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCCC
Confidence 9999999999876443221 1235789999999999999963
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-38 Score=324.07 Aligned_cols=259 Identities=18% Similarity=0.274 Sum_probs=201.9
Q ss_pred ceeEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCC--ceEEEEeccccccccccchh
Q 011023 189 LYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKG--STIEVQNIEEFSWLNASYAP 264 (495)
Q Consensus 189 ~~hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~--a~i~v~~i~~f~wl~~~y~p 264 (495)
.++||+++|+ +.+++|+|.|++.|++. -.+.||+++|+++.+.++.+-..-.+-+ +.+.+++++.|+
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~-------- 72 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFL-------- 72 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhh--------
Confidence 4789999996 78999999999999996 4599999999999999988766653333 344444444321
Q ss_pred HHHhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeee
Q 011023 265 IVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNG 344 (495)
Q Consensus 265 vl~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~via 344 (495)
..+ ..++++|.++|+||+||++||+++|+||||+|+||+|||++||.+|++++++|
T Consensus 73 -----------------------~~~-~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~a 128 (325)
T COG1442 73 -----------------------DYP-PFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLA 128 (325)
T ss_pred -----------------------ccc-ccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEE
Confidence 001 02478899999999999999999999999999999999999999999999999
Q ss_pred eecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhh
Q 011023 345 AVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAF 424 (495)
Q Consensus 345 AV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F 424 (495)
||.|+......-+ .. -.........||||||+++|+++||++++++++..+.+...+. ...+||+++|++|
T Consensus 129 aV~D~~~~~~~~~--~~-----~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~--~~~~DQdiLN~i~ 199 (325)
T COG1442 129 AVRDVFSHYMKEG--AL-----RLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKEND--LLYPDQDILNMIF 199 (325)
T ss_pred EEeehhhhhhhhh--hh-----HhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccc--cCCccccHHHHHH
Confidence 9999864221100 00 0001123478899999999999999999999999998665533 3447899999999
Q ss_pred cCCeeeccCcceeeccC-CCCc--cCccccCCCeEEEccCCCCCCccCccCCC-HHHHHHHHhcCCCchh
Q 011023 425 YGLTEPLDRRWHVLGLG-YDMN--IDNRLIESAAVIHFNGNMKPWLKLAISRY-KPIWDRYVNHSHPYVQ 490 (495)
Q Consensus 425 ~~~i~~L~~~WN~~~lg-y~~~--v~~~~i~~a~IIHf~G~~KPW~~~~~~~y-~~~W~~Y~~~t~pf~~ 490 (495)
+|++.+||.+||.+... +... .......+|.|+||+|+.|||...+.+.+ ..+|...+..+ ||..
T Consensus 200 ~~~~~~L~~~YN~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~w~~i~~~~-p~~~ 268 (325)
T COG1442 200 EDRVLELPIRYNAIPYIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPRSHEWHEILAET-PWKN 268 (325)
T ss_pred HhhhhccCcccceeehhhhccchhhhccCCCCceEEEecCCCCCCcCccccccHHHHHHHHHhcC-Cccc
Confidence 99999999999999632 1100 01234568899999999999999987555 58888888887 8875
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=100.00 E-value=3.6e-36 Score=291.34 Aligned_cols=245 Identities=24% Similarity=0.389 Sum_probs=169.5
Q ss_pred eEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHh
Q 011023 191 HFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQ 268 (495)
Q Consensus 191 hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~ 268 (495)
|||+++|. +.+++|+++|++.|++++..++|||++++++.+.++.+............+...+. ..+..
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~ 71 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDI---------SMLEE 71 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSG---------GHHH-
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchH---------Hhhhh
Confidence 79999996 67999999999999998788999999999999988876554321111111111000 00000
Q ss_pred hhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecc
Q 011023 269 LLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVET 348 (495)
Q Consensus 269 l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d 348 (495)
. ........+++..+|+||++|++||+++||||||+||||.+||++||+++++|+.+||+++
T Consensus 72 ~------------------~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~ 133 (250)
T PF01501_consen 72 F------------------QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVED 133 (250)
T ss_dssp -------------------TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE-
T ss_pred h------------------hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhcccccc
Confidence 0 0001124688999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcCCe
Q 011023 349 CLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLT 428 (495)
Q Consensus 349 ~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~~i 428 (495)
+... .. .+...+..........+||||||||+|+++||++++.+++..+++.+.. ....+||+++|++|++++
T Consensus 134 ~~~~--~~---~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DQ~~ln~~~~~~~ 206 (250)
T PF01501_consen 134 ESFD--NF---PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGM--KLGFPDQDILNIVFYGNI 206 (250)
T ss_dssp ---H--HH---HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTT--T-SSCHHHHHHHHHTTGE
T ss_pred chhh--hh---hhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhccc--ccCcCchHHHhhhcccee
Confidence 3321 11 1111111112233458999999999999999999999999999876654 344578999999999999
Q ss_pred eeccCcceeeccCCCCc--cCccccCCCeEEEccCCCCCCccC
Q 011023 429 EPLDRRWHVLGLGYDMN--IDNRLIESAAVIHFNGNMKPWLKL 469 (495)
Q Consensus 429 ~~L~~~WN~~~lgy~~~--v~~~~i~~a~IIHf~G~~KPW~~~ 469 (495)
.+||.+||+...++... ......++++||||+|..|||...
T Consensus 207 ~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 207 KPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp EEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred EEECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 99999999998755111 112346899999999999999875
No 17
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.98 E-value=1.9e-32 Score=271.69 Aligned_cols=234 Identities=15% Similarity=0.142 Sum_probs=165.1
Q ss_pred eeEEE-EeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 190 YHFCI-FSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 190 ~hia~-~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
+||.. ++|+ +.+++|++.|++.|+. ..++|||++++++.+..+++-......++.++++.++.-.|+.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~------- 71 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH------- 71 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh-------
Confidence 34443 4444 6789999999999985 4699999999999888877655544446777777653111100
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGA 345 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~viaA 345 (495)
... ...+ +..+|.|++++++||. ++||||||+|+||.+||++||++||+|+++||
T Consensus 72 ---------------------~~~--~~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aa 127 (248)
T cd06432 72 ---------------------KQT--EKQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGY 127 (248)
T ss_pred ---------------------ccc--ccch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEE
Confidence 000 0011 2457899999999996 99999999999999999999999999999999
Q ss_pred ecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHc-CCccccccCCCcHHHhhh
Q 011023 346 VETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-ADRTLWKLGTLPPALLAF 424 (495)
Q Consensus 346 V~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n-~d~~l~~~gdq~~~nl~F 424 (495)
|+||.... +......+........+ .+..|||||||||||++||++++++++.++++.. .+.......|||++|.++
T Consensus 128 v~d~~~~~-~~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~ 205 (248)
T cd06432 128 TPFCDSRK-EMDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQ 205 (248)
T ss_pred eeccccch-hcccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHh
Confidence 99986421 11000000000001122 2456999999999999999999999877655422 112223457899999999
Q ss_pred cCC-eeeccCcceeeccCCCCccCccccCCCeEEEccCC
Q 011023 425 YGL-TEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGN 462 (495)
Q Consensus 425 ~~~-i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~ 462 (495)
.+. +.+||.+||.+..-. ..+..+.|.+|||..+
T Consensus 206 ~~~~i~~Lp~~w~~~~~~~----~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 206 HQVPIFSLPQEWLWCETWC----SDESKKKAKTIDLCNN 240 (248)
T ss_pred ccCCeEECChHHHHHHHHh----cccccCccceeecccC
Confidence 886 999999999975321 2345789999999874
No 18
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.98 E-value=5.6e-32 Score=273.58 Aligned_cols=253 Identities=11% Similarity=0.199 Sum_probs=167.7
Q ss_pred eeEEEE-eC-CCcchhhhHhHhhhcCCCCCcEEEEEEeCC-CChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 190 YHFCIF-SD-NVPATSVVVNSTITNADHPKQMVFHIVTNG-VTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 190 ~hia~~-sD-nvlaasVvI~S~v~ns~~p~~~~FhIvtd~-is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
+|+|++ ++ ++..+-|+|+|++.|+.. .++|||++|+ ...+..+.+-.........+ ...+..+.
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~~--~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i-~~~i~~I~---------- 67 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQK--PLRFHIFAEDQLKQSFKEKLDDWPELIDRKF-NYTLHPIT---------- 67 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCCC--CEEEEEEECCccCHHHHHHHHHHHHhcccee-eeEEEEEe----------
Confidence 455543 44 467789999999999854 5999999998 44443322211111111112 01111110
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcC--CCCCC-ee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSL--DLHGN-VN 343 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~i--DL~g~-vi 343 (495)
|.... ...+ +..+++.+|+||++|++||+++||||||+|+||.+||++||++ |++|. ++
T Consensus 68 ------------~P~~~----~~~w--s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~a 129 (304)
T cd06430 68 ------------FPSGN----AAEW--KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLA 129 (304)
T ss_pred ------------cCccc----hhhh--hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEE
Confidence 00000 0011 1356679999999999999999999999999999999999999 99986 55
Q ss_pred eeecchhhh-hhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHH-----------HhHHHHHHHHHHHcCCccc
Q 011023 344 GAVETCLEA-FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRK-----------ANVTARYHYWQEQNADRTL 411 (495)
Q Consensus 344 aAV~d~~~~-~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~-----------~~it~~~~~~~~~n~d~~l 411 (495)
|++++-... ...+. .+ ...++ ....|||||||+|||++||+ .++++++..+++++.....
T Consensus 130 A~v~e~~~~~~~~~~---~~----~~~~~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (304)
T cd06430 130 AMAPEHEEPNIGWYN---RF----ARHPY-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKIT 201 (304)
T ss_pred EEEecccccchhhhh---hh----cccCc-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCC
Confidence 555553210 00111 00 01111 12346999999999999999 7889999999987764444
Q ss_pred cccCCCcHHHhhhcCC---eeeccCcceeeccCCCCcc--CccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcC
Q 011023 412 WKLGTLPPALLAFYGL---TEPLDRRWHVLGLGYDMNI--DNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHS 485 (495)
Q Consensus 412 ~~~gdq~~~nl~F~~~---i~~L~~~WN~~~lgy~~~v--~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t 485 (495)
| +|||++|++|+++ +++||.+||++.....++. ...+.+.++|||++++.| .....+.++.++.-..+++
T Consensus 202 ~--~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~--~~~~~~~f~~~~~~~~~~~ 276 (304)
T cd06430 202 W--GDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY--HSDKQPAFRAVYEAIREYT 276 (304)
T ss_pred C--CCHHHHHHHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC--CCccchHHHHHHHHHHhcc
Confidence 4 8999999999998 9999999998764322222 223457899999998766 3444455788888777666
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.93 E-value=2.9e-25 Score=219.00 Aligned_cols=219 Identities=16% Similarity=0.135 Sum_probs=152.1
Q ss_pred EEEE-eC-C-CcchhhhHhHhhhcCCCCCcEEEEEE-eCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHH
Q 011023 192 FCIF-SD-N-VPATSVVVNSTITNADHPKQMVFHIV-TNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 267 (495)
Q Consensus 192 ia~~-sD-n-vlaasVvI~S~v~ns~~p~~~~FhIv-td~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~ 267 (495)
+|.+ +| + +.+++|++.|+.+|+.+ +.++|+ +++++.+.++.+-... .+++.++.+++ .. .
T Consensus 3 y~t~~~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~---~~---~- 66 (240)
T cd02537 3 YVTLLTNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDP---PD---S- 66 (240)
T ss_pred EEEEecChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCC---cc---h-
Confidence 4433 44 4 77999999999999774 455555 5579988887654331 23433332210 00 0
Q ss_pred hhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeec
Q 011023 268 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVE 347 (495)
Q Consensus 268 ~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~ 347 (495)
.. ......+..+|.||+++++. .++||||||+|+||.+||++||++ +..++|+.
T Consensus 67 -------------------~~---~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~ 120 (240)
T cd02537 67 -------------------AN---LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAP 120 (240)
T ss_pred -------------------hh---hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeec
Confidence 00 00134566789999999975 589999999999999999999987 67788887
Q ss_pred chhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcCC
Q 011023 348 TCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL 427 (495)
Q Consensus 348 d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~~ 427 (495)
|+.. ..|||||||++|++. ++.+.+.+++..+.. +..+||+++|.+|.++
T Consensus 121 d~~~-----------------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~---~~~~DQdiLN~~~~~~ 170 (240)
T cd02537 121 DCGW-----------------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS---FDGGDQGLLNSYFSDR 170 (240)
T ss_pred ccCc-----------------------cccccceEEEEcCCH----HHHHHHHHHHhccCC---CCCCCHHHHHHHHcCC
Confidence 6531 357999999999964 445555555554432 5568999999999999
Q ss_pred --eeeccCcceeeccCCCCccC-ccccCCCeEEEccCCCCCCccCccC---------CCHHHHHHHH
Q 011023 428 --TEPLDRRWHVLGLGYDMNID-NRLIESAAVIHFNGNMKPWLKLAIS---------RYKPIWDRYV 482 (495)
Q Consensus 428 --i~~L~~~WN~~~lgy~~~v~-~~~i~~a~IIHf~G~~KPW~~~~~~---------~y~~~W~~Y~ 482 (495)
+..||.+||++...+..... ....++++||||+|+.|||...+.. .....||...
T Consensus 171 ~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~w~~~~ 237 (240)
T cd02537 171 GIWKRLPFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWWRDPETKEKDDYNELHQWWWDIY 237 (240)
T ss_pred CCEeECCcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCCcCCCcccccchHHHHHHHHHHH
Confidence 99999999998643321111 1335689999999999999876543 2356666654
No 20
>PLN00176 galactinol synthase
Probab=99.91 E-value=8.5e-24 Score=216.92 Aligned_cols=233 Identities=16% Similarity=0.237 Sum_probs=149.2
Q ss_pred CcchhhhHhHhhhcCCCCCcEEEEE-EeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhhhcccccce
Q 011023 199 VPATSVVVNSTITNADHPKQMVFHI-VTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAI 277 (495)
Q Consensus 199 vlaasVvI~S~v~ns~~p~~~~FhI-vtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~ 277 (495)
+.++.|+.+|+..+.. . ..++| +|++++.+..+.+-.. +. .|+.|+.+. .| + .
T Consensus 36 ~~Ga~vL~~SLr~~~s-~--~~lVvlVt~dVp~e~r~~L~~~----g~--~V~~V~~i~------~~--~------~--- 89 (333)
T PLN00176 36 VKGVVGLAKGLRKVKS-A--YPLVVAVLPDVPEEHRRILVSQ----GC--IVREIEPVY------PP--E------N--- 89 (333)
T ss_pred HHHHHHHHHHHHHhCC-C--CCEEEEECCCCCHHHHHHHHHc----CC--EEEEecccC------Cc--c------c---
Confidence 7899999999987632 2 33333 4688998776654221 22 334443211 00 0 0
Q ss_pred ecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhh--h
Q 011023 278 YFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFH--R 355 (495)
Q Consensus 278 ~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~--r 355 (495)
...+..+.+ ..+|.||.++++. +++||||||+|+||.++|++||+++ +..+|||.||.+... .
T Consensus 90 ----------~~~~~~~~~--~i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~ 154 (333)
T PLN00176 90 ----------QTQFAMAYY--VINYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSH 154 (333)
T ss_pred ----------ccccccchh--hhhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccc
Confidence 000111111 2467899999977 5899999999999999999999874 346899999875311 0
Q ss_pred hh-----------hcccCCCcccccCCC-CCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhh
Q 011023 356 YY-----------KYLNFSNPIISSKFD-PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLA 423 (495)
Q Consensus 356 ~~-----------~~ln~s~p~i~~~f~-~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~ 423 (495)
+. ..++| |. ..+ +...||||||||||++.|+.+++.+. ++.+.. ...+||+.+|.+
T Consensus 155 ~p~~~~~~c~~~~~~~~w--p~---~~g~~~~~yFNSGVlvinps~~~~~~ll~~----l~~~~~---~~f~DQD~LN~~ 222 (333)
T PLN00176 155 TPQYKIGYCQQCPDKVTW--PA---ELGPPPPLYFNAGMFVFEPSLSTYEDLLET----LKITPP---TPFAEQDFLNMF 222 (333)
T ss_pred cccccccccccchhhccc--hh---hccCCCCCeEEeEEEEEEcCHHHHHHHHHH----HHhcCC---CCCCCHHHHHHH
Confidence 00 01111 10 111 23679999999999999998877653 343332 234899999999
Q ss_pred hcCCeeeccCcceeecc-CCCCccCccccCCCeEEEccC-CCCCCccCccCC---------CHHHHHHHHhcC
Q 011023 424 FYGLTEPLDRRWHVLGL-GYDMNIDNRLIESAAVIHFNG-NMKPWLKLAISR---------YKPIWDRYVNHS 485 (495)
Q Consensus 424 F~~~i~~L~~~WN~~~l-gy~~~v~~~~i~~a~IIHf~G-~~KPW~~~~~~~---------y~~~W~~Y~~~t 485 (495)
|.+++.+||.+||++.. -|... .....++++||||+| ..|||...+.+. ..+.||...+.+
T Consensus 223 F~~~~~~Lp~~YN~~~~~~~~~~-~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~ 294 (333)
T PLN00176 223 FRDIYKPIPPVYNLVLAMLWRHP-ENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDE 294 (333)
T ss_pred HcCcEEECCchhcCchhhhhhCh-hhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhccc
Confidence 99999999999999752 12111 112356899999997 579998765321 245566665443
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.76 E-value=3.6e-18 Score=171.78 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=109.0
Q ss_pred CcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccCCCcccccCCCCCC
Q 011023 296 YLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQA 375 (495)
Q Consensus 296 ~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~ 375 (495)
.++. +|.||.++++ ++++||||||+|+||.++|++||+++.. ..+||+. . .
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~-~~~Aap~-~-------------------------~ 126 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNY-IKFAAPR-A-------------------------Y 126 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcc-cceeeec-C-------------------------c
Confidence 4544 4999999999 6799999999999999999999998733 3355542 1 1
Q ss_pred cceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcCC-------eeeccCc-ceeeccCCCCc--
Q 011023 376 CGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL-------TEPLDRR-WHVLGLGYDMN-- 445 (495)
Q Consensus 376 ~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~~-------i~~L~~~-WN~~~lgy~~~-- 445 (495)
.||||||||||++.|+.++++++.......+. ..+||+++|.+|.|. +..||.+ ||++..-+...
T Consensus 127 ~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~-----~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~ 201 (278)
T cd06914 127 WKFASHLMVIKPSKEAFKELMTEILPAYLNKK-----NEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLH 201 (278)
T ss_pred ceecceeEEEeCCHHHHHHHHHHHHHhcccCC-----CCCChHHHHHHHhCCccccCcceEEcCccccccCChhhcccCH
Confidence 17999999999999999999999876553211 346899999999999 9999997 99886422211
Q ss_pred -------------cC-ccccCCCeEEEccCC--CCCCccCc
Q 011023 446 -------------ID-NRLIESAAVIHFNGN--MKPWLKLA 470 (495)
Q Consensus 446 -------------v~-~~~i~~a~IIHf~G~--~KPW~~~~ 470 (495)
.+ .+..+++++|||++. .|||....
T Consensus 202 ~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~ 242 (278)
T cd06914 202 KSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNN 242 (278)
T ss_pred HHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence 00 123578999999985 69998864
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=8.6e-11 Score=133.97 Aligned_cols=255 Identities=18% Similarity=0.255 Sum_probs=171.6
Q ss_pred cCCCceeEE-EEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEecccccccccc
Q 011023 185 VDNNLYHFC-IFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNAS 261 (495)
Q Consensus 185 ~d~~~~hia-~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~ 261 (495)
.|.+.|+|. ++|-+ -+-+-+++.|+++|.+.| +.|+++-+-+|..=.+..=.++...+-..++++ |+|=.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~---YkWPr-- 1249 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ---YKWPR-- 1249 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEE---ecCch--
Confidence 344478876 44555 357899999999999998 999999887765443333223333444555553 55511
Q ss_pred chhHHHhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCC
Q 011023 262 YAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHG 340 (495)
Q Consensus 262 y~pvl~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g 340 (495)
+|+|.... .++ +-.|--+||.-|||- ++||||.|+|-||+.||.||.+.|++|
T Consensus 1250 ---WLhqQ~EK--------------QRi---------iWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfdl~G 1303 (1470)
T KOG1879|consen 1250 ---WLHQQTEK--------------QRI---------IWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFDLGG 1303 (1470)
T ss_pred ---hhhhhhhh--------------hhh---------hhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcccCC
Confidence 44432110 011 124556788889996 999999999999999999999999999
Q ss_pred CeeeeecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHH-HHHHHcCCc-cccc-cCCC
Q 011023 341 NVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYH-YWQEQNADR-TLWK-LGTL 417 (495)
Q Consensus 341 ~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~-~~~~~n~d~-~l~~-~gdq 417 (495)
.+.|-++.|..+ .....|..|+...+++.+ ....|.-|...|+||++.|+-.-..++. .|+....|- .+-+ ++||
T Consensus 1304 aPygYtPfCdsR-~EMDGyRFWK~GYW~~hL-~grkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDL 1381 (1470)
T KOG1879|consen 1304 APYGYTPFCDSR-REMDGYRFWKQGYWKKHL-RGRKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDL 1381 (1470)
T ss_pred CccccCcccccc-ccccchhHHhhhHHHHHh-ccCccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhhccccc
Confidence 999999999742 233344455554444433 2478889999999999999998888876 354443332 2333 2566
Q ss_pred cHHHhhhcCCeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccC----ccCCCHHHHHHH
Q 011023 418 PPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKL----AISRYKPIWDRY 481 (495)
Q Consensus 418 ~~~nl~F~~~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~----~~~~y~~~W~~Y 481 (495)
|. |+.-.-.|+.||..|-++...++ .+..+.|++|--+-+ ||... +...--..|..|
T Consensus 1382 PN-nm~hqVpIkSLPqeWLWCETWC~----d~skkkAktIDLCnN--P~TKEpKL~~A~Riv~EW~dy 1442 (1470)
T KOG1879|consen 1382 PN-NMQHQVPIKSLPQEWLWCETWCD----DESKKKAKTIDLCNN--PLTKEPKLDAARRIVSEWTDY 1442 (1470)
T ss_pred cc-cceeecccccCCcchhhhhhhcC----chhhhhchhhhhhcC--ccccchhhHHHhhhcCCCccc
Confidence 53 45666779999999987764333 345678899988875 77665 222334555544
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=4.8e-06 Score=84.07 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=85.7
Q ss_pred hhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhh---hhhhhh-------------------
Q 011023 300 LNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLE---AFHRYY------------------- 357 (495)
Q Consensus 300 ~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~---~~~r~~------------------- 357 (495)
.++.++.+-+.- ++|||+|||+|.||.+++++||... -+-++|.+|... .|+|.+
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg~~r~ 231 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGKMRA 231 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCccceeecHHHHhhcccHh
Confidence 455677666766 5899999999999999999999754 333444444321 222221
Q ss_pred ----hcccCCC--cc-cccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcC----
Q 011023 358 ----KYLNFSN--PI-ISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG---- 426 (495)
Q Consensus 358 ----~~ln~s~--p~-i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~---- 426 (495)
.|+++.. +. +.+...+-..+||||.||++..+.--..+.... +-+...|..+ -.|..+|++++.
T Consensus 232 ~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~a--lPklydda~m---meqsllnlaYn~~g~F 306 (368)
T COG5597 232 ALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFA--LPKLYDDADM---MEQSLLNLAYNYEGFF 306 (368)
T ss_pred hhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHh--hHHhhhhhhH---HHHHHHHHHHhhhccC
Confidence 2333311 11 122222236789999999999877665554332 1111111111 124556665432
Q ss_pred CeeeccCcceeeccCCCCccCccccCCCeEEEccCCCCCCccCcc
Q 011023 427 LTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAI 471 (495)
Q Consensus 427 ~i~~L~~~WN~~~lgy~~~v~~~~i~~a~IIHf~G~~KPW~~~~~ 471 (495)
.+..++.+|| ||- ....++.-.+-+|+ |||...+.
T Consensus 307 Pwerld~~yN----G~w--a~~ndlPylka~Hg----K~W~y~g~ 341 (368)
T COG5597 307 PWERLDPRYN----GYW--ADANDLPYLKAWHG----KPWFYTGE 341 (368)
T ss_pred chhhcCcccc----ccc--ccccccchHHHhhc----CcCCCCcc
Confidence 2344555655 332 22223333455665 99998875
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=93.96 E-value=0.16 Score=48.74 Aligned_cols=140 Identities=17% Similarity=0.076 Sum_probs=73.9
Q ss_pred chhhhHHhhh-cccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccCCCcccccCCCCCCc
Q 011023 298 SLLNHLRFYI-PEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQAC 376 (495)
Q Consensus 298 S~~~y~Rf~l-PellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~ 376 (495)
..++..|.-+ -+++..=--|+|+|+|+|..+|..+++ +-.+.-+.+..|+.... .......
T Consensus 49 ~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~----------------~~~~~~~ 110 (212)
T PF03407_consen 49 QKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGT----------------NSDRNGN 110 (212)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhh--ccCCCceEEecCCCccc----------------chhhcCC
Confidence 3344455443 445544346999999999999999999 21333344444544210 0011233
Q ss_pred ceeeceeeeehhHHHHHhHHHH-HHHHHHHcCCccccccCCCcHHHhhhcCC--------eeeccCcceeeccCCCCcc-
Q 011023 377 GWAFGMNAFDLIAWRKANVTAR-YHYWQEQNADRTLWKLGTLPPALLAFYGL--------TEPLDRRWHVLGLGYDMNI- 446 (495)
Q Consensus 377 yfNsGV~linL~~wR~~~it~~-~~~~~~~n~d~~l~~~gdq~~~nl~F~~~--------i~~L~~~WN~~~lgy~~~v- 446 (495)
.+|+|++.+--. .-+.. +..|.+...+..- ..||.+++.++... +..||..--..+.+|-...
T Consensus 111 ~~n~G~~~~r~t-----~~~~~~~~~w~~~~~~~~~--~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~ 183 (212)
T PF03407_consen 111 LVNTGFYYFRPT-----PRTIAFLEDWLERMAESPG--CWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSR 183 (212)
T ss_pred ccccceEEEecC-----HHHHHHHHHHHHHHHhCCC--cchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecc
Confidence 359999998544 33333 3456543222211 12678888766653 4455554332232221110
Q ss_pred Cc-cc--cCCCeEEEccCC
Q 011023 447 DN-RL--IESAAVIHFNGN 462 (495)
Q Consensus 447 ~~-~~--i~~a~IIHf~G~ 462 (495)
.. .. ...|.+||.++.
T Consensus 184 ~~~~~~~~~~p~~vH~n~~ 202 (212)
T PF03407_consen 184 DWAWVPTKNKPYIVHANCC 202 (212)
T ss_pred hhhhhccccccceEEEcCC
Confidence 01 11 357999999873
No 25
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=93.52 E-value=0.48 Score=50.48 Aligned_cols=163 Identities=16% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCC--eeeeecchhhhhhhhhhcccCCCcccccCC
Q 011023 294 PRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGN--VNGAVETCLEAFHRYYKYLNFSNPIISSKF 371 (495)
Q Consensus 294 ~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~--viaAV~d~~~~~~r~~~~ln~s~p~i~~~f 371 (495)
+..++..-++|=.+- -+|+.+-|.|||+|.||..-- +++.+..+ .+-.+.. +. +-. ..
T Consensus 179 p~~WaKlpaLR~aM~-~~PeaEWiWWLDsDALImNms---felPlery~~~NlVihg-------~~------~~l---~~ 238 (429)
T PLN03182 179 AGFWAKLPLLRKLML-AHPEVEWIWWMDSDALFTDMT---FEIPLEKYEGYNLVIHG-------WD------ELV---YD 238 (429)
T ss_pred CcchhHHHHHHHHHH-HCCCceEEEEecCCceeecCC---CCCCHhHcCCcCeeecc-------ch------hhh---ee
Confidence 466777666665554 378999999999999997621 11222211 0111100 00 000 01
Q ss_pred CCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHc-----------------CCccccccCCCcHHHhhh------cCCe
Q 011023 372 DPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQN-----------------ADRTLWKLGTLPPALLAF------YGLT 428 (495)
Q Consensus 372 ~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n-----------------~d~~l~~~gdq~~~nl~F------~~~i 428 (495)
..+-.+.|+|+++|-.-.|--.-+. .|.... .++..+...||.++..+. ++.-
T Consensus 239 ~kdW~GLNtGsFLIRNcqWSldlLD----aWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~~~~w~~k 314 (429)
T PLN03182 239 QKSWIGLNTGSFLIRNCQWSLDLLD----AWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQRERWGDK 314 (429)
T ss_pred ccccCccceeeEEEEcCHHHHHHHH----HHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhcchhhccc
Confidence 2345678999999977777644332 233221 244556667888876544 2233
Q ss_pred eeccCcceeeccC------CCCcc-----CccccCCCeEEEccCCCCCCccCccCCCHHHHHHH
Q 011023 429 EPLDRRWHVLGLG------YDMNI-----DNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRY 481 (495)
Q Consensus 429 ~~L~~~WN~~~lg------y~~~v-----~~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y 481 (495)
.+|...|-+.|.. |.... ....-.-|-|.||+| .||+...+..+-..-|...
T Consensus 315 v~le~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~G-ckpC~~~~~y~~~~C~~~m 377 (429)
T PLN03182 315 VYLENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVG-CKPCGGYGDYPVERCLKQM 377 (429)
T ss_pred eEEeecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeecc-ceecCCCCCcCHHHHHHHH
Confidence 5666676665531 11000 012335689999999 8999666543335555544
No 26
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=83.80 E-value=2.7 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=29.2
Q ss_pred HHhhhcccccCCCeEEEEecCeeeccCChhhhcCC
Q 011023 303 LRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLD 337 (495)
Q Consensus 303 ~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iD 337 (495)
..=.+.-++...+.||+||+|.|...|++.||+.+
T Consensus 80 ~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 80 QNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred hhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 33345667877999999999999999999999754
No 27
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=83.18 E-value=1.8 Score=45.91 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=23.3
Q ss_pred hhhHHhhhcccccCCCeEEEEecCeeeccCChhhhc
Q 011023 300 LNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFS 335 (495)
Q Consensus 300 ~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~ 335 (495)
.+..|+.+=.=+ + =||||.|+||.++++.|=|
T Consensus 228 Sdl~RLA~LyKY---G-GvYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLYKY---G-GVYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHh---C-CEEeeccEEEecccccccc
Confidence 456676643222 2 2899999999999999875
No 28
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=82.41 E-value=5.8 Score=34.63 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 011023 61 HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDI-ATTIMTMKSHIQALEERANAATVQS 139 (495)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~kl~~~~~~~e~~~~~~~~~~ 139 (495)
.++.-||+.-+-++|.+|..+...++ .++.+.=.+.+.+|.+++...-+- ..++.+-|+++..+|+-++.+-=|+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~----~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~ 86 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAG----DEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQG 86 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 67888999999999999998876653 366777777888888888766666 7899999999999999998876554
No 29
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=79.35 E-value=1.2 Score=44.32 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=12.6
Q ss_pred ccCCCeEEEEecCeeeccCChhh
Q 011023 311 YPQLEKIVFLDDDVVVQKDLTPL 333 (495)
Q Consensus 311 lP~ldKVLYLD~DvVV~~DLseL 333 (495)
+|+.+-|+|||+|.+|..-=-+|
T Consensus 74 ~P~~~wv~~lD~Dali~n~~~~L 96 (239)
T PF05637_consen 74 YPEAEWVWWLDSDALIMNPDFSL 96 (239)
T ss_dssp -TT-SEEEEE-TTEEE-------
T ss_pred CCCCCEEEEEcCCeEEEeccccc
Confidence 38899999999999997654443
No 30
>PRK10132 hypothetical protein; Provisional
Probab=74.32 E-value=17 Score=32.01 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011023 61 HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 140 (495)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~ 140 (495)
++|..||+.-+.++|.+|.++...+.- ++.+.=.+.+..+..|++..-|-..+..+.+.....+++-++.+--++.
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~~----~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv 90 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAKG----EAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 688999999999999999877665533 5566667778888888876777777777889999999999988766654
No 31
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=71.90 E-value=16 Score=30.33 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcc--cchHHHHHHHHHHHHHHHHHHHHHh
Q 011023 65 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAH--YDIATTIMTMKSHIQALEERANAAT 136 (495)
Q Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~kl~~~~~~~e~~~~~~~ 136 (495)
+++.-.|+.-|+++|.|++.-|+-.-..|...++..+.-+.+|++.. .|- .+...=...|+..|-|++.++
T Consensus 6 kQve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 6 KQVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999999997666446677778888887777777654 444 677777888999898887665
No 32
>PLN03181 glycosyltransferase; Provisional
Probab=70.23 E-value=27 Score=37.76 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=25.7
Q ss_pred CCCcchhhhHHhhhcccccCCCeEEEEecCeeeccC
Q 011023 294 PRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKD 329 (495)
Q Consensus 294 ~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~D 329 (495)
+..++..-..|=.+- -+|+.+-|-|||.|+||...
T Consensus 180 p~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 180 NSYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred chhhhHHHHHHHHHH-HCCCceEEEEecCCceeecC
Confidence 456666655663332 28999999999999999855
No 33
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=62.68 E-value=27 Score=36.74 Aligned_cols=114 Identities=12% Similarity=0.218 Sum_probs=66.9
Q ss_pred eEEEE-eCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhh
Q 011023 191 HFCIF-SDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQL 269 (495)
Q Consensus 191 hia~~-sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l 269 (495)
.|+++ ++...++.-+|.|+++..+......++|..|+-..+....--.. ..+++ .++.. ++.
T Consensus 3 PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~--~~~i~-~i~~~-~~~------------- 65 (334)
T cd02514 3 PVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF--GDGVT-HIQHP-PIS------------- 65 (334)
T ss_pred CEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh--ccccE-EEEcc-ccc-------------
Confidence 45554 44467899999999997533335788899898765543321110 01111 11110 000
Q ss_pred hcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC--CCeEEEEecCeeeccCChhhhc
Q 011023 270 LNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ--LEKIVFLDDDVVVQKDLTPLFS 335 (495)
Q Consensus 270 ~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~--ldKVLYLD~DvVV~~DLseLw~ 335 (495)
+ ...+..-++ ..|..+..|++.-+-.+|-. +++||+||+|+++--|.-+.++
T Consensus 66 ---------~---~~~~~~~~~--~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~ 119 (334)
T cd02514 66 ---------I---KNVNPPHKF--QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQ 119 (334)
T ss_pred ---------c---cccCccccc--chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHH
Confidence 0 000000011 14566777888888888865 8999999999999999665554
No 34
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=62.49 E-value=18 Score=39.38 Aligned_cols=118 Identities=13% Similarity=0.274 Sum_probs=62.6
Q ss_pred ceeEE-EEeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHH
Q 011023 189 LYHFC-IFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK 267 (495)
Q Consensus 189 ~~hia-~~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~ 267 (495)
.+.|+ ++|+...++.-+|.|++++....+.+.+.|--|+-+.+..+..-. +.+ .+.. |+..+ ..|+..
T Consensus 94 ~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~---y~~-~v~~--i~~~~-----~~~i~~ 162 (434)
T PF03071_consen 94 VIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKS---YGD-QVTY--IQHPD-----FSPITI 162 (434)
T ss_dssp ---EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHG---GGG-GSEE--EE-S-------S----
T ss_pred cceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHH---hhh-hhee--eecCC-----cCCcee
Confidence 34444 566668899999999999875555666666667765554443211 111 1111 11100 001000
Q ss_pred hhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC--CCeEEEEecCeeeccCChhhhcC
Q 011023 268 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ--LEKIVFLDDDVVVQKDLTPLFSL 336 (495)
Q Consensus 268 ~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~--ldKVLYLD~DvVV~~DLseLw~i 336 (495)
.+. .-++ ..|..++.|+|.-|-.+|.. +++||.|.+|+.|--|+=+-|+.
T Consensus 163 ---------------~~~--~~~~--~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~ 214 (434)
T PF03071_consen 163 ---------------PPK--EKKF--KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSA 214 (434)
T ss_dssp ----------------TT---GGG--HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHH
T ss_pred ---------------Ccc--cccc--cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHH
Confidence 000 0011 14667889999999999964 89999999999999998776653
No 35
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=60.93 E-value=37 Score=24.97 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Q 011023 41 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 79 (495)
Q Consensus 41 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 79 (495)
|-.|+..-++|..-||..+...=+.-|..+++|+++-+.
T Consensus 1 LleQi~~I~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 1 LLEQINIIESYIKQAKAARRFDEVATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999987654
No 36
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=60.08 E-value=12 Score=39.47 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=76.3
Q ss_pred ccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhh-----hhhhhhh-cccCCCc--c---cccCCCC--CCcc
Q 011023 311 YPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLE-----AFHRYYK-YLNFSNP--I---ISSKFDP--QACG 377 (495)
Q Consensus 311 lP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~-----~~~r~~~-~ln~s~p--~---i~~~f~~--~~~y 377 (495)
|...++++|+|.|+.+..++..++++-.. .-.+...|.. ....+.. .....++ . ...-+.. ..+.
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 199 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNE--LNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLI 199 (369)
T ss_pred eeccCceEEEecchhhccCccccccccch--hcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccce
Confidence 45679999999999999999888866432 2222222211 0000110 1111111 0 0111222 3455
Q ss_pred eeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcCCeeeccCcceeec-cCCCCc--cC--ccccC
Q 011023 378 WAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLG-LGYDMN--ID--NRLIE 452 (495)
Q Consensus 378 fNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~~i~~L~~~WN~~~-lgy~~~--v~--~~~i~ 452 (495)
+|+|++++-...---. .+.+.......+..++|..++..|..---+.|...|..- .++... .. .....
T Consensus 200 ~n~~~~v~~ps~~~~~-------~~~~~~~~~~~~~~~~q~~l~~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~~ 272 (369)
T KOG1950|consen 200 FNSGLLVFEPSLCNYK-------DLMEFSEEFESYNGADQGFLHLIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASSV 272 (369)
T ss_pred eccCccccCCCccchh-------hHHHhhcccCCCCCccchhhHHHhhcccCCCcccccccccccccCccccchhhcccc
Confidence 9999999865433322 233332233445667888888888764447777776543 222111 11 11112
Q ss_pred CCeEEEccCCCCCCcc
Q 011023 453 SAAVIHFNGNMKPWLK 468 (495)
Q Consensus 453 ~a~IIHf~G~~KPW~~ 468 (495)
.-..+||.|..|||..
T Consensus 273 ~~~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 273 LRYALHYLGANKPELC 288 (369)
T ss_pred cchhhhccccCCCCcc
Confidence 2234599997677654
No 37
>PRK10404 hypothetical protein; Provisional
Probab=57.23 E-value=52 Score=28.57 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=56.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHH-HHHHHHHHHHHHHHHHHHH
Q 011023 57 EHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIAT-TIMTMKSHIQALEERANAA 135 (495)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~kl~~~~~~~e~~~~~~ 135 (495)
..+.+++..||+.-+.++|.+|..+..++ -..+.+.=.+.+..+..++...-|... +..+.|+....+++-++.+
T Consensus 4 ~~~~~~l~~dl~~L~~dle~Ll~~~~~~a----~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~ 79 (101)
T PRK10404 4 QFGDTRIDDDLTLLSETLEEVLRSSGDPA----DQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEK 79 (101)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999998876554 234555556666677777654444444 3445799999999999887
Q ss_pred hhhhh
Q 011023 136 TVQST 140 (495)
Q Consensus 136 ~~~~~ 140 (495)
--|+.
T Consensus 80 Pw~av 84 (101)
T PRK10404 80 PWQGI 84 (101)
T ss_pred cHHHH
Confidence 65543
No 38
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=53.51 E-value=2.3e+02 Score=29.04 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=60.0
Q ss_pred ccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccC---CCccccc--CCCCCCcceeecee
Q 011023 309 EIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAFGMN 383 (495)
Q Consensus 309 ellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~---s~p~i~~--~f~~~~~yfNsGV~ 383 (495)
.++-++|-+.++|+|+++++++.. + .| |..+|....-.- . +....| .+|.=.. +++.+..|+.+|++
T Consensus 119 ~~~~e~DYlF~~dvd~~F~~~ig~--E-~L-g~lva~lHp~~y--~--~~~~~fpYERrp~S~AyIp~~eGdfYy~Ga~~ 190 (271)
T cd02515 119 RIGHEVDYLFCMDVDMVFQGPFGV--E-TL-GDSVAQLHPWWY--G--KPRKQFPYERRPSSAAYIPEGEGDFYYHGAVF 190 (271)
T ss_pred hhcccCCEEEEeeCCceEeecCCH--H-Hh-hhhheecChhhh--c--CCCCCCCCcCCCCccccccCCCCCeEEeeeec
Confidence 345579999999999999999873 1 12 234454432110 0 001111 1121011 34456677777776
Q ss_pred eeehhHHHHHhHHHHHHHHHHH---cCCccccccCCCcHHHhh-hcCC-eeeccCcceeec
Q 011023 384 AFDLIAWRKANVTARYHYWQEQ---NADRTLWKLGTLPPALLA-FYGL-TEPLDRRWHVLG 439 (495)
Q Consensus 384 linL~~wR~~~it~~~~~~~~~---n~d~~l~~~gdq~~~nl~-F~~~-i~~L~~~WN~~~ 439 (495)
==-..+- .++++.|+.-+.. |+-...|.+ -.-+|-. +.++ ++.|++.|.+..
T Consensus 191 GG~~~~v--l~l~~~c~~~i~~D~~n~I~A~wHD--ESHLNkYf~~~Kp~KiLSPeY~w~e 247 (271)
T cd02515 191 GGSVEEV--YRLTRACHEGILADKANGIEARWHD--ESHLNKYFLLHKPTKVLSPEYLWDD 247 (271)
T ss_pred CccHHHH--HHHHHHHHHHHHHHHhCCceEEeec--HhHhHHHHhhCCCCeecChhhcCCc
Confidence 2222211 1245555543321 222345643 2334443 3344 889999987764
No 39
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.93 E-value=43 Score=27.60 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHH
Q 011023 65 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIM 119 (495)
Q Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (495)
.+|++-|..+||+ ..+-......+..+-+.||..+||.+.+-+
T Consensus 4 ~~Lr~~ieRiErL------------EeEk~~i~~dikdVyaEAK~~GfD~K~lr~ 46 (74)
T PF10073_consen 4 EQLRQFIERIERL------------EEEKKAISDDIKDVYAEAKGNGFDTKALRQ 46 (74)
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5788888888888 445566778889999999999999987644
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=47.54 E-value=1.3e+02 Score=25.08 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=27.3
Q ss_pred EeCCCcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhh
Q 011023 195 FSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWF 237 (495)
Q Consensus 195 ~sDnvlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf 237 (495)
+.+......-++.|+...... ...+.|++++.+.+....+.
T Consensus 5 ~~~~~~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~~ 45 (156)
T cd00761 5 AYNEEPYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEILE 45 (156)
T ss_pred ecCcHHHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHHH
Confidence 344455667788888877653 47788999887666555443
No 41
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.59 E-value=31 Score=35.26 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHHHHHHhhhcc-----------cchHHHHHHHHHHHHHHHH
Q 011023 90 LDEAEPIISSLSSLIFTAQDAH-----------YDIATTIMTMKSHIQALEE 130 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~~~~kl~~~~~~~e~ 130 (495)
-++|.+-|+.+.++|.-+|+.. .|...=-+||..+|++||=
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMEl 170 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMEL 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHH
Confidence 5678888888888887777543 4666666779999999983
No 42
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=46.50 E-value=98 Score=32.64 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=54.4
Q ss_pred hhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccC---CCccccc--CCCCCCcceee
Q 011023 306 YIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF---SNPIISS--KFDPQACGWAF 380 (495)
Q Consensus 306 ~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~---s~p~i~~--~f~~~~~yfNs 380 (495)
..-.++.++|-+.++|+|+++++++.. +.=|..+|....-.- .+ ..-.| .+|.=.. +++.+..|+.+
T Consensus 181 i~~~~~~EvDYLFc~dvd~~F~~~vGv----E~Lg~lva~LHp~~y--~~--~~~~FpYERrp~S~AyIp~~eGDfYY~g 252 (337)
T PF03414_consen 181 IEQHIQHEVDYLFCMDVDMVFQDHVGV----EILGDLVATLHPWFY--FK--PRESFPYERRPKSQAYIPYGEGDFYYHG 252 (337)
T ss_dssp HHHCHHHH-SEEEEEESSEEE-S-B-G----GG-SSEEEEESTTTT--TS--TGGGS--B-STTSTTB--TT--S--EEC
T ss_pred HHHHHhhcCCEEEEEecceEEecccCH----HHHHHHHHHhCHHHH--CC--ChhhCccccCccccccccCCCCCeEEec
Confidence 334566779999999999999999875 222566666543221 00 00111 1121011 24455667777
Q ss_pred ceeeeehhHHHHHhHHHHHHHHHH---HcCCccccccCCCcHHHhhh--cCCeeeccCcceeec
Q 011023 381 GMNAFDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALLAF--YGLTEPLDRRWHVLG 439 (495)
Q Consensus 381 GV~linL~~wR~~~it~~~~~~~~---~n~d~~l~~~gdq~~~nl~F--~~~i~~L~~~WN~~~ 439 (495)
|++==-..+- .++++.|+.-+. .|+-...|.+ -.=+|-.| ...++.|++.|.+..
T Consensus 253 a~fGGt~~~v--l~Lt~~c~~~i~~D~~n~I~A~WhD--ESHLNKYfl~~KPtKvLSPEY~Wd~ 312 (337)
T PF03414_consen 253 AFFGGTVEEV--LRLTEACHQGIMQDKANGIEALWHD--ESHLNKYFLYHKPTKVLSPEYCWDE 312 (337)
T ss_dssp CEEEECHHHH--HHHHHHHHHHHHHHHHTT---TTCH--HHHHHHHHHHS--SEEE-GGGSBSH
T ss_pred eecCCcHHHH--HHHHHHHHHHHHhhhhcCceEeccc--hhhhHHHHhhCCCceecCHHHccCc
Confidence 7653222221 235555554432 2333456643 23344433 344888999887743
No 43
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.83 E-value=91 Score=25.87 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 011023 65 WELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERA 132 (495)
Q Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~ 132 (495)
+.+++-+++.++.+... .+++.+..+.++.++.++++..-|.+....++..+.++.++--
T Consensus 22 ~~l~~~l~~~~~ti~~l--------~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTL--------QEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555666666665554 4556667888888888888888888888888888888776543
No 44
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=43.28 E-value=38 Score=35.17 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=35.7
Q ss_pred HHhhhcccccCCCeEEEEecCeeeccCChhhhcCCC--CCCeeeeec
Q 011023 303 LRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDL--HGNVNGAVE 347 (495)
Q Consensus 303 ~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL--~g~viaAV~ 347 (495)
.+++...+||+++--||+|+-+.+.+|+..|.+-=+ ++.-+|+..
T Consensus 142 ~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~ 188 (305)
T PF04765_consen 142 PKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISK 188 (305)
T ss_pred cceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeC
Confidence 477778899999999999999999999988765433 445566644
No 45
>PRK13694 hypothetical protein; Provisional
Probab=42.73 E-value=75 Score=26.72 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHH
Q 011023 64 AWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIM 119 (495)
Q Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (495)
..+|++=|..+||+ ..+-...-..+..+.+.||..+||.+.+-+
T Consensus 11 ~~~Lr~fIERIERL------------EeEkk~i~~dikdVyaEAK~~GfD~K~~r~ 54 (83)
T PRK13694 11 KEQLRAFIERIERL------------EEEKKTISDDIKDVYAEAKGNGFDVKALKT 54 (83)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45788888888887 445556677888899999999999987643
No 46
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.56 E-value=3.5e+02 Score=26.83 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=42.3
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 011023 52 VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEER 131 (495)
Q Consensus 52 ~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~ 131 (495)
+-.|-..|++.|+++.-.+++.+|..+..- ..-+...+..+.+.+...-.-...+..+++-..++.-+
T Consensus 75 A~~Al~~g~E~LAr~al~~~~~le~~~~~~------------~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 75 AELALQAGNEDLAREALEEKQSLEDLAKAL------------EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778888888777777777553321 11122222222222222222333444455555555545
Q ss_pred HHHHhhhhhHhhhhhc
Q 011023 132 ANAATVQSTLFGQLLA 147 (495)
Q Consensus 132 ~~~~~~~~~~~~~la~ 147 (495)
...++-+..+...++.
T Consensus 143 ~~~akA~~~v~~~~~~ 158 (225)
T COG1842 143 KAAAKAQEKVNRSLGG 158 (225)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5555555555555544
No 47
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.53 E-value=1.7e+02 Score=28.15 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=75.8
Q ss_pred hhhHHHHHhH-HHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcc
Q 011023 34 ATSFSRQLAE-QIILAKAYVIIAKEHNNHRL-AWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAH 111 (495)
Q Consensus 34 ~~~~~~~~~d-~~~~a~~y~~~a~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (495)
++-+-|-++. -.-+||.|++-|=.+.|+.+ .--|++|+-..-..+--|.+.... ..+-...++.|+..+.-+.
T Consensus 36 k~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~V--t~sM~gVvK~md~alktmN--- 110 (203)
T KOG3232|consen 36 KAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKV--TKSMAGVVKSMDSALKTMN--- 110 (203)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCC---
Confidence 3344444544 67789999888877776654 245777777766666555555555 5566667777777775442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhc----cccCccccchhh
Q 011023 112 YDIATTIMTMKSHIQALEERANAATVQSTLFGQLLA----ESLPKSLHCLKV 159 (495)
Q Consensus 112 ~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~----~~~pk~~hcl~~ 159 (495)
..|+.++++..|.|..-...|..+...-.+ .++|++--=..|
T Consensus 111 ------Lekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lm 156 (203)
T KOG3232|consen 111 ------LEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLM 156 (203)
T ss_pred ------HHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHH
Confidence 357888999999998888888877665443 345766433333
No 48
>PHA01346 hypothetical protein
Probab=41.90 E-value=1.1e+02 Score=22.74 Aligned_cols=45 Identities=27% Similarity=0.138 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhh
Q 011023 60 NHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQ 108 (495)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (495)
|.-|.+||+..|-|+.|+--.|..|.|. +-++.-..++.++.+-.
T Consensus 5 ntllmqelrllicelkrlrlsavsdpdf----sqekihaeldsllrkls 49 (53)
T PHA01346 5 NTLLMQELRLLICELKRLRLSAVSDPDF----SQEKIHAELDSLLRKLS 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCc----cHHHHHHHHHHHHHHHH
Confidence 5678899999999999886555555444 33344455666665543
No 49
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=40.41 E-value=14 Score=31.42 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=28.4
Q ss_pred CCcchhhhHHhhhcccccCCCeEEEEecCeeeccCC-hhhh
Q 011023 295 RYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDL-TPLF 334 (495)
Q Consensus 295 ~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DL-seLw 334 (495)
.+.....++|+.+=-..-- ||+|.|+++.+++ +++-
T Consensus 61 ~~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 3455678899998776665 8999999999999 6543
No 50
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=39.41 E-value=1.4e+02 Score=25.02 Aligned_cols=75 Identities=19% Similarity=0.072 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 011023 62 RLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIA-TTIMTMKSHIQALEERANAATVQST 140 (495)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~kl~~~~~~~e~~~~~~~~~~~ 140 (495)
.+..||.+-+.+++.+++.....+ ...+.+.-.+++..+..+++..-|.. .+..+.+.....+|+.++.+--++.
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 456778888888888777665443 22334444444455554444333322 4667789999999999988877764
No 51
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.38 E-value=2.5e+02 Score=27.41 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=63.1
Q ss_pred ChhhHHHHHhHHHHHHHHH--HHHHhhccchHHHHHHHHHHHHHHHHHhhhhh--cCCCCCCCchHHHHHHHHHHHHHhh
Q 011023 33 SATSFSRQLAEQIILAKAY--VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM--RGEPITLDEAEPIISSLSSLIFTAQ 108 (495)
Q Consensus 33 ~~~~~~~~~~d~~~~a~~y--~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (495)
..+..++.|+|+|.-||.= -.+|..+.-.+-..++..++.+.+.---.|.. +.+| -+++.......+..+..-+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdL--Ar~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDL--ARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4567888899988877763 23344333344455666666666654333333 2344 5566555555555555555
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 011023 109 DAHYDIATTIMTMKSHIQALEERANAATVQ 138 (495)
Q Consensus 109 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~ 138 (495)
...-.-...+.+|+.-+..++.++...+.+
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556677788888888888777666443
No 52
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=36.74 E-value=1.1e+02 Score=27.02 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=42.5
Q ss_pred HHHHHHhhccc--hHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhh----hcccchHHHHH
Q 011023 50 AYVIIAKEHNN--HRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQ----DAHYDIATTIM 119 (495)
Q Consensus 50 ~y~~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~~~~ 119 (495)
||+.+-|.+|- -.=...|+.+.=|+-|-+-+.+..-.+...++-...++..+..++.|- +-+.||.+++.
T Consensus 23 AYlqLRkAKGYMSVSEsdhLRdN~FeL~re~~~~s~~l~~h~d~eE~~aL~~A~~aLa~AaVCLMsGhHDCPtfia 98 (127)
T PRK12302 23 AYLQLRKAKGYMSVSESDHLRDNFFELNRELHDKSLRLNLHLDQEEWSALRHAEEALATAAVCLMSGHHDCPTFIA 98 (127)
T ss_pred HHHHHHHHcCccccchhhHHHHHHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceee
Confidence 68887777771 111233555555555555555444444335555566777788887775 34789999864
No 53
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=31.89 E-value=2e+02 Score=25.67 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=45.8
Q ss_pred ChhhHHHHHhHHHHHHH----HHHHHHhhcc------chHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHH
Q 011023 33 SATSFSRQLAEQIILAK----AYVIIAKEHN------NHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSS 102 (495)
Q Consensus 33 ~~~~~~~~~~d~~~~a~----~y~~~a~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (495)
+.|-..+-|-++||-|| ||+.+-|.+| +.+ |+.+.=|+-+-+-+-+..-.+...++-...++..+.
T Consensus 2 ~Vdrl~~~LlnkLInAridLaAYLQLRkAKGYMSVSEsdh----LRdn~FeLc~e~r~~~~~l~~~l~~eE~~aL~~a~~ 77 (127)
T PF10799_consen 2 SVDRLKRDLLNKLINARIDLAAYLQLRKAKGYMSVSESDH----LRDNLFELCREMRDKAPRLKLHLDPEEWEALRRAGE 77 (127)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCccccchhhh----HHHHHHHHHHHHHHhhHhhhhhcCHHHHHHHHHHHH
Confidence 35667777888888887 6888888887 222 222222222222222221111113344445566666
Q ss_pred HHHHhh----hcccchHHHHH
Q 011023 103 LIFTAQ----DAHYDIATTIM 119 (495)
Q Consensus 103 ~~~~~~----~~~~d~~~~~~ 119 (495)
.++.|- +-+.||.+++.
T Consensus 78 a~a~AaVCLMsGhHDCP~~Ia 98 (127)
T PF10799_consen 78 ALASAAVCLMSGHHDCPTYIA 98 (127)
T ss_pred HHHHHHHHHHcCCCCCCceee
Confidence 666654 34789998764
No 54
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.27 E-value=3.4e+02 Score=22.72 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 011023 64 AWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMK 122 (495)
Q Consensus 64 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~ 122 (495)
.-+|++-|..+||+ +.+-.........+-+.||..+||.+++-.-+|
T Consensus 13 ~~QLrafIerIERl------------EeEk~~i~~dikdvy~eakg~GFDvKa~r~iir 59 (85)
T COG3750 13 AGQLRAFIERIERL------------EEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIR 59 (85)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 45788888888887 555566677788889999999999988755543
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.92 E-value=2.8e+02 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=11.8
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHhhh
Q 011023 55 AKEHNNHRLAWELSKKIRSCQLLLSKA 81 (495)
Q Consensus 55 a~~~~~~~~~~~l~~~~~~~~~~~~~~ 81 (495)
|++.+-.....+-+..|...+.++++|
T Consensus 1525 ~sL~nVd~IL~~T~~di~ra~~L~s~A 1551 (1758)
T KOG0994|consen 1525 ASLPNVDAILSRTKGDIARAENLQSEA 1551 (1758)
T ss_pred HhcccHHHHHHhhhhhHHHHHHHHHHH
Confidence 333343444444444444444444444
No 56
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.54 E-value=4.8e+02 Score=25.11 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=57.4
Q ss_pred ChhhHHHHHhHHHHHHHHH--HHHHhhccchHHHHHHHHHHHHHHHHHhhhhh--cCCCCCCCchHHHHHHHHHHHHHhh
Q 011023 33 SATSFSRQLAEQIILAKAY--VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM--RGEPITLDEAEPIISSLSSLIFTAQ 108 (495)
Q Consensus 33 ~~~~~~~~~~d~~~~a~~y--~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (495)
-.+..+|.|.+++.-|+.= -.+|....-.+-..++...+.+.+.-.-.|.. +.+| -+.+..+....+..+...+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL--Ar~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL--AREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4566777788887777653 22233222333334444555554444333322 2344 4556666666666666666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHh
Q 011023 109 DAHYDIATTIMTMKSHIQALEERANAAT 136 (495)
Q Consensus 109 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~ 136 (495)
...-....-+.+|+..+..++.++...+
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555666677777777777776665553
No 57
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=28.36 E-value=2.6e+02 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=38.2
Q ss_pred CCchHHHHHHHHHHHHHhhhcc-------cchHHHHHHH-------HHHHHHHHHHHHHHhhhhhHhhhhhcccc
Q 011023 90 LDEAEPIISSLSSLIFTAQDAH-------YDIATTIMTM-------KSHIQALEERANAATVQSTLFGQLLAESL 150 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~~~~kl-------~~~~~~~e~~~~~~~~~~~~~~~la~~~~ 150 (495)
+..+.+.++-++-++.+-+... -.|..++.+. ..=..++|+++|.+-.|+. .+||+.++
T Consensus 15 E~Gs~Dil~Ii~~l~~~~~~~~~~~~~Lk~~f~~~~~~~~~~~~~~~~e~Ka~EQRIRRai~~al--~nlAsLGl 87 (134)
T PF08664_consen 15 EAGSKDILKIIEYLIEQEKSFSQNFPSLKEIFEELAQKKLASDEEIEKEKKAIEQRIRRAIKQAL--TNLASLGL 87 (134)
T ss_pred ccCHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 3356666777776666544322 2333344333 4445788999999998885 89999886
No 58
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=27.99 E-value=2.6e+02 Score=22.38 Aligned_cols=24 Identities=17% Similarity=0.064 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 011023 115 ATTIMTMKSHIQALEERANAATVQ 138 (495)
Q Consensus 115 ~~~~~kl~~~~~~~e~~~~~~~~~ 138 (495)
.++..-...++..++..++.|..-
T Consensus 64 ~t~~~~~~~~~~~~~~~a~~h~~~ 87 (91)
T PF00611_consen 64 GTLKNAWDSLLEETEQIAEQHSKL 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888777653
No 59
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=26.39 E-value=42 Score=33.17 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=20.3
Q ss_pred hhcccccCCCeEEEEecCeeeccC
Q 011023 306 YIPEIYPQLEKIVFLDDDVVVQKD 329 (495)
Q Consensus 306 ~lPellP~ldKVLYLD~DvVV~~D 329 (495)
.+..++|.++-|++||+||.|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 457888999999999999988643
No 60
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.18 E-value=84 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011023 65 WELSKKIRSCQLLLSKA 81 (495)
Q Consensus 65 ~~l~~~~~~~~~~~~~~ 81 (495)
..|+.+|+++|+-|++.
T Consensus 4 ~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 4 NRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56899999999998875
No 61
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=25.29 E-value=53 Score=29.26 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhh
Q 011023 66 ELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQD 109 (495)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (495)
+|+.+||++||+|......++. --+-+..+++++.-+..++.
T Consensus 1 klK~riRdieRLL~r~~Lp~~v--R~~~Er~L~~L~~~l~~~~~ 42 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRKDLPADV--RVEKERELEALKRELEEAER 42 (114)
T ss_pred CHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999877222222 22334456666666665543
No 62
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=24.19 E-value=1.7e+02 Score=26.33 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=37.2
Q ss_pred hHHHHHhHHHHHHH--HHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhc
Q 011023 36 SFSRQLAEQIILAK--AYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMR 84 (495)
Q Consensus 36 ~~~~~~~d~~~~a~--~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 84 (495)
+++++-.-...+.. |+.+++-..+-..|.+|.+.||++-.+.|+++..+
T Consensus 30 alL~rtA~EVais~aea~~AL~t~~~A~~LL~ei~rRIr~GS~RL~~al~r 80 (121)
T PF09543_consen 30 ALLRRTAREVAISDAEAEQALATDEGAAALLREIRRRIRDGSRRLSRALHR 80 (121)
T ss_pred HHHHHHHHHhcCCHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 47788888899999999999999999999988664
No 63
>PRK15384 type III secretion system protein; Provisional
Probab=23.34 E-value=42 Score=33.81 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=19.8
Q ss_pred CeEEEEecCeeeccCChhhhcCC
Q 011023 315 EKIVFLDDDVVVQKDLTPLFSLD 337 (495)
Q Consensus 315 dKVLYLD~DvVV~~DLseLw~iD 337 (495)
+-+||||+||++.+-|.-|+--|
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~PD 239 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYIPD 239 (336)
T ss_pred CceEEeeccceeecccccEEcCC
Confidence 56899999999999999988544
No 64
>PRK15383 type III secretion system protein; Provisional
Probab=23.15 E-value=44 Score=33.66 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.9
Q ss_pred CeEEEEecCeeeccCChhhhcCC
Q 011023 315 EKIVFLDDDVVVQKDLTPLFSLD 337 (495)
Q Consensus 315 dKVLYLD~DvVV~~DLseLw~iD 337 (495)
+-+||||+||++.+-|.-|+--|
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~PD 242 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYLPD 242 (335)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 56899999999999999988544
No 65
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=23.02 E-value=45 Score=33.61 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=19.9
Q ss_pred CeEEEEecCeeeccCChhhhcCC
Q 011023 315 EKIVFLDDDVVVQKDLTPLFSLD 337 (495)
Q Consensus 315 dKVLYLD~DvVV~~DLseLw~iD 337 (495)
+-+||||+||++.+-|..|+--|
T Consensus 212 ~GCIYLD~DMilT~KLG~ly~PD 234 (326)
T PRK15382 212 EGCIYLDADMIITDKLGVLYAPD 234 (326)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 56999999999999999988544
No 66
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.63 E-value=6e+02 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=11.5
Q ss_pred ccccChhhHHHHHhHHH
Q 011023 29 KEILSATSFSRQLAEQI 45 (495)
Q Consensus 29 ~~~~~~~~~~~~~~d~~ 45 (495)
-++++.-+-..+|.+|+
T Consensus 406 pvIPt~ps~l~~l~~~~ 422 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKL 422 (547)
T ss_pred ceeecCCCCHHHHHHHH
Confidence 56777767677776665
No 67
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=22.62 E-value=4e+02 Score=27.55 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=12.9
Q ss_pred cCccccchhhHhHHHHHhCch
Q 011023 150 LPKSLHCLKVKLSVDWVRSKH 170 (495)
Q Consensus 150 ~pk~~hcl~~rl~~e~~~~~~ 170 (495)
+|+...=-.+|...|-..|.-
T Consensus 272 L~~~~e~~l~rivQEaltN~~ 292 (365)
T COG4585 272 LPPEAEDALFRIVQEALTNAI 292 (365)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 455555566677777665554
No 68
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.50 E-value=4.9e+02 Score=25.94 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=60.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 011023 49 KAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQAL 128 (495)
Q Consensus 49 ~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~ 128 (495)
+.+-.++...+..++..|++..+.++ +.|-..-.+- -+.+..-+..||.+|..+++..-.....+.++..-+..+
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L---~~Er~~h~ee--LrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEEL---LQERMAHVEE--LRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666555544 2333222222 356677789999999999988777788888877777777
Q ss_pred HHHHHHHhhhhhHhhhhhccccCc
Q 011023 129 EERANAATVQSTLFGQLLAESLPK 152 (495)
Q Consensus 129 e~~~~~~~~~~~~~~~la~~~~pk 152 (495)
-++++..++.- ++-..+|-
T Consensus 94 k~~in~~R~e~-----lgl~~Lp~ 112 (230)
T PF10146_consen 94 KDEINELRKEY-----LGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHH-----cCCCCCCc
Confidence 77777765542 34445554
No 69
>PRK10698 phage shock protein PspA; Provisional
Probab=22.48 E-value=7.2e+02 Score=24.41 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred ChhhHHHHHhHHHHHHHHH--HHHHhhccchHHHHHHHHHHHHHHHHHhhhhh--cCCCCCCCchHHHHHHHHHHHHHhh
Q 011023 33 SATSFSRQLAEQIILAKAY--VIIAKEHNNHRLAWELSKKIRSCQLLLSKAAM--RGEPITLDEAEPIISSLSSLIFTAQ 108 (495)
Q Consensus 33 ~~~~~~~~~~d~~~~a~~y--~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (495)
..+.+++.|+|++.=+|.= -.+|....-.+-..++..++.+.++--.-|-. +.+| -+.++..-+.....++.-+
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdL--Ar~AL~~K~~~~~~~~~l~ 105 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDL--ARAALIEKQKLTDLIATLE 105 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3466778888887766652 22333333333444555555555443222222 3344 5554444445555555555
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHh
Q 011023 109 DAHYDIATTIMTMKSHIQALEERANAAT 136 (495)
Q Consensus 109 ~~~~d~~~~~~kl~~~~~~~e~~~~~~~ 136 (495)
...-.....+.+|++-+..++.++...+
T Consensus 106 ~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 106 HEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666777788888888887776663
No 70
>PLN02939 transferase, transferring glycosyl groups
Probab=22.05 E-value=3.6e+02 Score=32.62 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhhhcCCCC-----CCCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 011023 67 LSKKIRSCQLLLSKAAMRGEPI-----TLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAA 135 (495)
Q Consensus 67 l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~ 135 (495)
+-.+..++|.+|..++...+-. --....+++.+++..+.+|.-..+-|. .+..|++-+..+||+++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSY-KVELLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHHHHHHhh
Confidence 4455666777777766543211 144678899999999999986666554 4466777777777766543
No 71
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.42 E-value=4.8e+02 Score=25.82 Aligned_cols=137 Identities=10% Similarity=0.065 Sum_probs=87.0
Q ss_pred ccccccChhhHHHHHhHHHHHHHHHHHH-Hhhc-cchHHHHHHHHHHHHHHHHHhhhhh-------------cCCCCCCC
Q 011023 27 FTKEILSATSFSRQLAEQIILAKAYVII-AKEH-NNHRLAWELSKKIRSCQLLLSKAAM-------------RGEPITLD 91 (495)
Q Consensus 27 ~~~~~~~~~~~~~~~~d~~~~a~~y~~~-a~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~ 91 (495)
+.+|....-.-.++++.|+-..++|..- .+.- ++.+-..+|.++|.+++..-.+-.. ..|+ |-
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~--Pf 124 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL--PF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC
Confidence 3444444555677888888888888332 2211 1333445566666665533222111 2455 44
Q ss_pred chH---HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhccccCccccchhhHhHHHHHhC
Q 011023 92 EAE---PIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRS 168 (495)
Q Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~pk~~hcl~~rl~~e~~~~ 168 (495)
... ++++.++.++.++. - +...|+|.++.+...++..-+.-+.+=+.+...|-|...-+|-+=...=||.+
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~d-----v-~~~ek~r~vlea~~~E~~yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t 198 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDAD-----V-SLAEKFRRVLEAYQIEMEYGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQT 198 (251)
T ss_pred ChHHHHHHHHHHHHhhhccC-----C-CHHHHHHHHHHHHHHHHHhCCceeEEEEEEeECCeEEEEEEEeecchhheeEC
Confidence 444 45555555555442 2 34578999999999999999888888888888888888888887777777776
Q ss_pred chh
Q 011023 169 KHI 171 (495)
Q Consensus 169 ~~~ 171 (495)
.+.
T Consensus 199 ~Dg 201 (251)
T PF11932_consen 199 LDG 201 (251)
T ss_pred CCc
Confidence 654
No 72
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.33 E-value=40 Score=35.31 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.1
Q ss_pred CCCCcceeeceeeeehhHHHHH
Q 011023 372 DPQACGWAFGMNAFDLIAWRKA 393 (495)
Q Consensus 372 ~~~~~yfNsGV~linL~~wR~~ 393 (495)
....++|||||.+|....+.++
T Consensus 188 ~sG~y~WNSGmF~Fra~~~l~e 209 (333)
T COG0836 188 ESGEYLWNSGMFLFRASVFLEE 209 (333)
T ss_pred HcCceEeeccceEEEHHHHHHH
Confidence 3456899999999987766654
No 73
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.08 E-value=2.6e+02 Score=31.37 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 011023 90 LDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERAN 133 (495)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~ 133 (495)
|.++.+.++.++.+++.+.. -+..-..|+++++.+++-++
T Consensus 475 p~~L~~TL~~l~~~l~~~~~----~s~~~~~l~~tl~~l~~~~r 514 (547)
T PRK10807 475 PADMQKTLRELNRSMQGFQP----GSPAYNKMVADMQRLDQVLR 514 (547)
T ss_pred HHHHHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHHH
Confidence 44555556666666654331 12223344444444444443
No 74
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=20.01 E-value=3.4e+02 Score=21.82 Aligned_cols=26 Identities=4% Similarity=0.001 Sum_probs=17.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Q 011023 111 HYDIATTIMTMKSHIQALEERANAAT 136 (495)
Q Consensus 111 ~~d~~~~~~kl~~~~~~~e~~~~~~~ 136 (495)
..+..++-.-...++..+|..++.|.
T Consensus 60 ~~~~~s~~~aw~~~~~e~~~~a~~h~ 85 (87)
T smart00055 60 ESEYGSLSKSWEVLLSETDALAKQHL 85 (87)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 34555566667778888877776654
Done!