Query 011023
Match_columns 495
No_of_seqs 282 out of 1349
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.5E-46 5E-51 376.0 15.5 258 189-489 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 1.5E-41 5.1E-46 344.4 19.2 251 190-483 1-269 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 7.6E-26 2.6E-30 231.9 15.3 227 189-485 4-256 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 1.3E-23 4.5E-28 208.8 13.6 205 194-469 10-224 (263)
5 3v1a_A Computational design, M 79.9 3.8 0.00013 29.8 5.4 38 41-78 6-43 (48)
6 1yzm_A FYVE-finger-containing 76.3 6.1 0.00021 29.1 5.7 40 40-79 6-45 (51)
7 1z0j_B FYVE-finger-containing 74.2 7.1 0.00024 29.6 5.7 41 40-80 13-53 (59)
8 1z0k_B FYVE-finger-containing 73.5 6.9 0.00024 30.6 5.7 40 40-79 24-63 (69)
9 1o7q_A N-acetyllactosaminide a 72.4 40 0.0014 33.3 12.3 126 304-439 129-262 (289)
10 3ioh_A Histo-blood group ABO s 43.1 1.4E+02 0.0047 29.6 10.3 122 308-439 142-271 (298)
11 1fo8_A Alpha-1,3-mannosyl-glyc 40.6 91 0.0031 31.3 8.9 40 296-335 80-121 (343)
12 4e61_A Protein BIM1; EB1-like 37.1 68 0.0023 27.0 6.0 60 66-130 22-101 (106)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.5e-46 Score=376.00 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=191.5
Q ss_pred ceeEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 189 LYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 189 ~~hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
.+|||+++|+ +.+++|+|+|++.|+++ ++++|||++++++.+.++.+.......+..|+++.+++ ++
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------- 73 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL--------- 73 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH---------
Confidence 4899999996 67999999999999986 57999999999998877665554444567788776643 10
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGA 345 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~viaA 345 (495)
|. ..+ ..+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+++||
T Consensus 74 ------------~~-------~~~--~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aa 132 (276)
T 3tzt_A 74 ------------FS-------FAK--VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAA 132 (276)
T ss_dssp -------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEE
T ss_pred ------------Hh-------cCc--cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEE
Confidence 00 001 125788999999999999995 99999999999999999999999999999999
Q ss_pred ecchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhc
Q 011023 346 VETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFY 425 (495)
Q Consensus 346 V~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~ 425 (495)
|+||.... ...+.+ ..+++...||||||||||||++||+.++++++++|++.+.... ..+||+++|++|+
T Consensus 133 v~d~~~~~--~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~--~~~DQd~LN~~f~ 202 (276)
T 3tzt_A 133 ASHTGKTD--MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL--LLPDQDILNAMYG 202 (276)
T ss_dssp EEC----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHG
T ss_pred EEecccch--HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc--cCCChhHHHHHHh
Confidence 99997431 111111 1234444699999999999999999999999999998776443 3489999999999
Q ss_pred CCeeeccC-cceeeccCCCCc--c---C----ccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHhcCCCch
Q 011023 426 GLTEPLDR-RWHVLGLGYDMN--I---D----NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYV 489 (495)
Q Consensus 426 ~~i~~L~~-~WN~~~lgy~~~--v---~----~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~~t~pf~ 489 (495)
|++++||. +||++.. |... . + .+.+++|+||||+|+.|||...+.++|+++||+|++..++++
T Consensus 203 ~~~~~Lp~~~wN~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 203 DRIYPLDDLIYNYDAR-NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp GGEEEEEHHHHSEETT-CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred CCEEECCchheeeecc-cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 99999998 9999973 3211 0 1 124578999999999999999999999999999999877665
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=1.5e-41 Score=344.42 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=195.2
Q ss_pred eeEEEEeCC--CcchhhhHhHh-hhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 190 YHFCIFSDN--VPATSVVVNST-ITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 190 ~hia~~sDn--vlaasVvI~S~-v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
+|||+++|+ +.+++|+++|+ +.|+.. +++|||++++++.+..+.+.......+..|+++.+++- +
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~~--~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~-~--------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPDT--EIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE-D--------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTTS--CCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG-G---------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCCC--CceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH-H---------
Confidence 699999996 67999999999 998744 69999999999988876554443334566777665420 0
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 346 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV 346 (495)
|. ..+. ..+++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||
T Consensus 69 ------------~~-------~~~~-~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav 128 (311)
T 1g9r_A 69 ------------FA-------GFPL-NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS 128 (311)
T ss_dssp ------------GT-------TSCC-CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEE
T ss_pred ------------Hh-------cCcc-ccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEE
Confidence 00 0111 135788999999999999999999999999999999999999999999999999
Q ss_pred cchhhhh-hhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhc
Q 011023 347 ETCLEAF-HRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFY 425 (495)
Q Consensus 347 ~d~~~~~-~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~ 425 (495)
+||.... ..+...+ ++.+..|||||||||||+++||+.++++++.+|++.+..... .+||+++|.+|.
T Consensus 129 ~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~--~~DQd~lN~~f~ 197 (311)
T 1g9r_A 129 IDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQ--YQDQDILNGLFK 197 (311)
T ss_dssp ECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCS--SHHHHHHHHHHT
T ss_pred eccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCc--cCCcCHHHHHHc
Confidence 9987431 1122222 233457899999999999999999999999999987654433 478999999999
Q ss_pred CCeeeccCcceeeccCCCC------cc--C------ccccCCCeEEEccCCCCCCccCccCCCHHHHHHHHh
Q 011023 426 GLTEPLDRRWHVLGLGYDM------NI--D------NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVN 483 (495)
Q Consensus 426 ~~i~~L~~~WN~~~lgy~~------~v--~------~~~i~~a~IIHf~G~~KPW~~~~~~~y~~~W~~Y~~ 483 (495)
+++..||.+||++..++.. +- . ....++++||||+|+.|||...+.+++.++|.++..
T Consensus 198 ~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 198 GGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp TSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred CCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 9999999999998643210 00 0 122358899999999999999988888877777663
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.93 E-value=7.6e-26 Score=231.92 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=154.7
Q ss_pred ceeEEEEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHH
Q 011023 189 LYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIV 266 (495)
Q Consensus 189 ~~hia~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl 266 (495)
..+|++++|+ +.++.|+++|+..|+.+ ..++| +++++++.+..+.+.... .. ++.++..+ ......+
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~~--v~~v~~l~---~~~~~~~ 72 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----DE--VITVDILD---SGDSAHL 72 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----SE--EEECCTTS---TTSTTHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----CE--EEEEeecC---Ccchhhc
Confidence 4677888875 67899999999999865 34555 678889888776654432 12 33332111 0000000
Q ss_pred HhhhcccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeee
Q 011023 267 KQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV 346 (495)
Q Consensus 267 ~~l~~~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV 346 (495)
.. ...+ .+..+|+||++|++ ++++||||||+|+||++||++||+++ .+|||
T Consensus 73 ~~----------------------~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv 123 (333)
T 1ll2_A 73 TL----------------------MKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAA 123 (333)
T ss_dssp HH----------------------HHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEE
T ss_pred cc----------------------cccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEE
Confidence 00 0001 13578999999996 78999999999999999999999986 57888
Q ss_pred cchhhhhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcC
Q 011023 347 ETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG 426 (495)
Q Consensus 347 ~d~~~~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~ 426 (495)
+|.+ | .+||||||||||++. ...+++..+++.+. .+..+||+++|.+|.+
T Consensus 124 ~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 124 PDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLLNTFFNS 173 (333)
T ss_dssp ECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHHHHHTTT
T ss_pred ecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHHHHHHHh
Confidence 7642 1 368999999998863 33345555555442 3456899999999987
Q ss_pred Ce-----eeccCcceeeccC-CCCccC-ccccCCCeEEEccCCCCCCccCccC-----------------CCHHHHHHHH
Q 011023 427 LT-----EPLDRRWHVLGLG-YDMNID-NRLIESAAVIHFNGNMKPWLKLAIS-----------------RYKPIWDRYV 482 (495)
Q Consensus 427 ~i-----~~L~~~WN~~~lg-y~~~v~-~~~i~~a~IIHf~G~~KPW~~~~~~-----------------~y~~~W~~Y~ 482 (495)
.+ ..||.+||++... |...-. ....++++||||+|..|||...+.+ .+.+.||.+.
T Consensus 174 ~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~ 253 (333)
T 1ll2_A 174 WATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIF 253 (333)
T ss_dssp TTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHH
T ss_pred hcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHH
Confidence 54 7999999998742 221000 1235789999999999999887432 2356788877
Q ss_pred hcC
Q 011023 483 NHS 485 (495)
Q Consensus 483 ~~t 485 (495)
+..
T Consensus 254 ~~~ 256 (333)
T 1ll2_A 254 TTS 256 (333)
T ss_dssp HHT
T ss_pred Hhh
Confidence 643
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.90 E-value=1.3e-23 Score=208.76 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=141.4
Q ss_pred EEeCC--CcchhhhHhHhhhcCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCceEEEEeccccccccccchhHHHhhhc
Q 011023 194 IFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLN 271 (495)
Q Consensus 194 ~~sDn--vlaasVvI~S~v~ns~~p~~~~FhIvtd~is~~~m~~wf~~~~~~~a~i~v~~i~~f~wl~~~y~pvl~~l~~ 271 (495)
+++|+ +.++.|++.|+..++.+ ..+++ +++++++.+..+.+-.. +. +++.|+..+. .....+..
T Consensus 10 l~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~~--~vi~V~~l~~---~~~~~~~~--- 75 (263)
T 3u2u_A 10 LTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----FD--EVIMVDVLDS---GDSAHLTL--- 75 (263)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----SS--EEEECCCCCC---CCHHHHHH---
T ss_pred EEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----CC--eEEEeeecCC---cchhhhhh---
Confidence 45564 67999999999998765 33443 56788988777665433 22 2333332110 00000000
Q ss_pred ccccceecccccccccCCCCCCCCCcchhhhHHhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhh
Q 011023 272 ADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLE 351 (495)
Q Consensus 272 ~~~~~~~f~~~~~~~~~l~~r~~~~~S~~~y~Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~ 351 (495)
+..+. + ..++.|++++++.+ ++||||||+|++|++||++||+++ .+||+.|.+
T Consensus 76 -------------------~~rp~-~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~- 128 (263)
T 3u2u_A 76 -------------------MKRPE-L-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG- 128 (263)
T ss_dssp -------------------TTCTT-G-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT-
T ss_pred -------------------hcCcc-h-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCC-
Confidence 01122 2 36789999999875 899999999999999999999987 478887642
Q ss_pred hhhhhhhcccCCCcccccCCCCCCcceeeceeeeehhHHHHHhHHHHHHHHHHHcCCccccccCCCcHHHhhhcC-----
Q 011023 352 AFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG----- 426 (495)
Q Consensus 352 ~~~r~~~~ln~s~p~i~~~f~~~~~yfNsGV~linL~~wR~~~it~~~~~~~~~n~d~~l~~~gdq~~~nl~F~~----- 426 (495)
+ ..||||||||||++. ++.+++.++++.+. .+..+||+++|.+|.+
T Consensus 129 ----------~------------~~~fNsGv~li~p~~----~~~~~l~~~~~~~~---~~~~~DQd~LN~~f~~w~~~~ 179 (263)
T 3u2u_A 129 ----------W------------PDCFNSGVFVYQPSV----ETYNQLLHLASEQG---SFDGGDQGILNTFFSSWATTD 179 (263)
T ss_dssp ----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHHC---CTTSSHHHHHHHHTTTTTTSC
T ss_pred ----------C------------CccccCeEEEEcccH----HHHHHHHHHHHhcC---CCCcccHHHHHHHhccccccC
Confidence 1 258999999999964 55566666665433 2456899999999988
Q ss_pred CeeeccCcceeecc-CCC--CccCccccCCCeEEEccCCCCCCccC
Q 011023 427 LTEPLDRRWHVLGL-GYD--MNIDNRLIESAAVIHFNGNMKPWLKL 469 (495)
Q Consensus 427 ~i~~L~~~WN~~~l-gy~--~~v~~~~i~~a~IIHf~G~~KPW~~~ 469 (495)
.+++||.+||++.. .|. +.. .+..++++||||+|+.|||...
T Consensus 180 ~~~~Lp~~yN~~~~~~y~~~~~~-~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 180 IRKHLPFIYNLSSISIYSYLPAF-KVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp GGGBCCGGGSEEHHHHHSSHHHH-HHHGGGCSEEECCSSSCGGGSE
T ss_pred eeEeCCcccccccchhccccHHH-HhhcCCeEEEEECCCCcCCCCC
Confidence 78999999999853 232 111 1235789999999999999885
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=79.87 E-value=3.8 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 011023 41 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLL 78 (495)
Q Consensus 41 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~ 78 (495)
|+.|+++.+.|..-||..+...=+.-|..+++|+++-+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999888888999999988654
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=76.32 E-value=6.1 Score=29.13 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Q 011023 40 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 79 (495)
Q Consensus 40 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 79 (495)
=|..|+++.++|..-||..+...=+.-|..+++|+++-+-
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998888889999999987654
No 7
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=74.21 E-value=7.1 Score=29.60 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=36.3
Q ss_pred HHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhh
Q 011023 40 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSK 80 (495)
Q Consensus 40 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 80 (495)
-|..|+++.++|.--||..+...=+.-|..+++|+++-+..
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~ 53 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAK 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998888999999999876543
No 8
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=73.55 E-value=6.9 Score=30.63 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Q 011023 40 QLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLS 79 (495)
Q Consensus 40 ~~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~ 79 (495)
=|.+|+++.++|..-||..+...=+.-|..+++|+++-+-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999989999999999987654
No 9
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=72.43 E-value=40 Score=33.32 Aligned_cols=126 Identities=11% Similarity=0.019 Sum_probs=69.5
Q ss_pred HhhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccC-CCccccc--CCCCCCcceee
Q 011023 304 RFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF-SNPIISS--KFDPQACGWAF 380 (495)
Q Consensus 304 Rf~lPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~-s~p~i~~--~f~~~~~yfNs 380 (495)
++...+++.++|-+.++|+|+++++++..= .| |..+|....-.- .+-+..+-+ .+|.=.. +++.+..|+.+
T Consensus 129 ~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y--~~~~~~fpYERrp~S~AyIp~~eGdfYY~G 202 (289)
T 1o7q_A 129 EHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWY--KADPNDFTYERRKESAAYIPFGEGDFYYHA 202 (289)
T ss_dssp HHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTT--TSCGGGSCCCCCTTSTTCCCTTCCSCCEEE
T ss_pred HHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHh--CCCCCCCCCCCCcCceeeecCCCCCEEEEc
Confidence 333456677799999999999999998651 22 456666543211 000000001 1221111 35667889998
Q ss_pred ceeeeehhHHHHHhHHHHHHHHHH---HcCCccccccCCCcHHHhh-h-cCCeeeccCcceeec
Q 011023 381 GMNAFDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALLA-F-YGLTEPLDRRWHVLG 439 (495)
Q Consensus 381 GV~linL~~wR~~~it~~~~~~~~---~n~d~~l~~~gdq~~~nl~-F-~~~i~~L~~~WN~~~ 439 (495)
|++==-..+-. ++++.|+.-+. .|+-...|++ -.=+|-. | ...++.|++.|....
T Consensus 203 a~fGGt~~~vl--~l~~~c~~~i~~D~~n~I~A~wHD--ESHLNKYf~~~KPtKvLSPEY~wd~ 262 (289)
T 1o7q_A 203 AIFGGTPTQVL--NITQECFKGILKDKKNDIEAQWHD--ESHLNKYFLLNKPTKILSPEYCWDY 262 (289)
T ss_dssp EEEEECHHHHH--HHHHHHHHHHHHHHHTTCCCTTTH--HHHHHHHHHHSCCSEEECGGGSBCG
T ss_pred eeeCCcHHHHH--HHHHHHHHHHHHHHhCCeEEEecc--hhhhhHHHhhcCCCEEECHHHCCCc
Confidence 88743333322 35666665442 2433456753 2334433 3 445788999887654
No 10
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=43.11 E-value=1.4e+02 Score=29.61 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=61.3
Q ss_pred cccccCCCeEEEEecCeeeccCChhhhcCCCCCCeeeeecchhhhhhhhhhcccC-CCccccc--CCCCCCcceeeceee
Q 011023 308 PEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNF-SNPIISS--KFDPQACGWAFGMNA 384 (495)
Q Consensus 308 PellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~viaAV~d~~~~~~r~~~~ln~-s~p~i~~--~f~~~~~yfNsGV~l 384 (495)
-.++-++|-+.++|+|+++++++.. +.=|..+|....-. +.+-+..+-+ .+|.=.. +++.+..|+.+|++=
T Consensus 142 ~~~~~EvDyLfc~dvd~~F~~~vG~----E~Lg~lva~lHp~~--y~~~~~~FpYERrp~S~AyIp~~eGdfYY~ga~fG 215 (298)
T 3ioh_A 142 RRFLSEVDYLVCVDVDMEFRDHVGV----EILTPLFGTLHPGF--YGSSREAFTYERRPQSQAYIPKDEGDFYYGGAFFG 215 (298)
T ss_dssp HTHHHHCSEEEEEESSEEECSCBCG----GGCSSEEEEBCTTT--TTSCGGGSCCCCCTTSTTCCCTTCCSCCBCTTEEE
T ss_pred HHHhhcCCEEEEecCCCeeccCccH----HHhHhhHhhcChhh--hcCCcccCcccCCccccccccCCCCCeEEeeeecC
Confidence 4466679999999999999998764 11133445443211 0000000001 1121111 234566677666652
Q ss_pred eehhHHHHHhHHHHHHHHHH---HcCCccccccCCCcHHHhhh--cCCeeeccCcceeec
Q 011023 385 FDLIAWRKANVTARYHYWQE---QNADRTLWKLGTLPPALLAF--YGLTEPLDRRWHVLG 439 (495)
Q Consensus 385 inL~~wR~~~it~~~~~~~~---~n~d~~l~~~gdq~~~nl~F--~~~i~~L~~~WN~~~ 439 (495)
=-..+- .++++.|+.-+. .|+-...|.+ -.=+|-.| ...++.|++.|++..
T Consensus 216 Gt~~~v--l~Lt~~C~~~i~~D~~n~IeA~WhD--ESHLNKYfl~hKPtKvLSPEY~Wd~ 271 (298)
T 3ioh_A 216 GSVQEV--QRLTRACHQAMMVDQANGIEAVWHD--ESHLNKYLLRHKPTKVLSPEYLWDQ 271 (298)
T ss_dssp EEHHHH--HHHHHHHHHHHHHHHHTTCCCTTTH--HHHHHHHHHHSCCSEEECGGGSBCH
T ss_pred CcHHHH--HHHHHHHHHHHHHHHhCCceEeccc--hhhhhhhhhhcCCCceeCHHHcCCc
Confidence 112211 235555554432 2444456743 23344332 444788999887643
No 11
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=40.55 E-value=91 Score=31.31 Aligned_cols=40 Identities=25% Similarity=0.525 Sum_probs=31.3
Q ss_pred CcchhhhHHhhhccccc--CCCeEEEEecCeeeccCChhhhc
Q 011023 296 YLSLLNHLRFYIPEIYP--QLEKIVFLDDDVVVQKDLTPLFS 335 (495)
Q Consensus 296 ~~S~~~y~Rf~lPellP--~ldKVLYLD~DvVV~~DLseLw~ 335 (495)
|..+..+++--+-.+|. ..++||+||+|+++--|.=+.++
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~ 121 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQ 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHH
Confidence 34455677777888887 58999999999999999766554
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.08 E-value=68 Score=27.04 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHhhhc--------------------ccchHHHHHHHHHHH
Q 011023 66 ELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDA--------------------HYDIATTIMTMKSHI 125 (495)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~d~~~~~~kl~~~~ 125 (495)
+|.+++.++...+.......| +--.|++..|.++-.+.+. .-+-..+++|+.++|
T Consensus 22 ~L~~ei~eLk~~ve~lEkERD-----FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~IL 96 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIERE-----FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESIL 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHH
Confidence 455555554444333322222 3456788888887776542 112446789999999
Q ss_pred HHHHH
Q 011023 126 QALEE 130 (495)
Q Consensus 126 ~~~e~ 130 (495)
++|||
T Consensus 97 YaTee 101 (106)
T 4e61_A 97 YATAE 101 (106)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 99997
Done!