BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011024
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IHC|A Chain A, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|B Chain B, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|C Chain C, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|D Chain D, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|E Chain E, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|F Chain F, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|G Chain G, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|H Chain H, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
Length = 440
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 334 FQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNK-KI 392
F+HLR + G E+ + +Q K LE + FY + A E + ++
Sbjct: 230 FEHLRNKL----GFGIEFIHDVHERVTPVTAIQLAKTLEPYQLFYLEDPVAPENIDWLRM 285
Query: 393 FETSGRNRDTKNDLLLDLHDHGA---KEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDT 449
+ +L +++++ + I ++CH+S++ GI K L V E+N T
Sbjct: 286 LRQQSSTPISMGELFVNINEWKPLIDNKLIDYIRCHVSTIGGITPAKKLAVYSELNGVRT 345
Query: 450 TKGG 453
G
Sbjct: 346 AWHG 349
>pdb|4F61|I Chain I, Tubulin:stathmin-Like Domain Complex
Length = 240
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 125 ASKPLKLDPKEFPMSALWGEETKPKQSKGDHLQKEMEDFLFKLLGEGFQLSRDVIREVLD 184
AS P + DP EE + K + +K E L K L E + R+VI+ ++
Sbjct: 34 ASLPRRRDPS--------LEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIE 85
Query: 185 SCGYDMQKSMSKLID-----------HSA---ETLGEKTKFLGKSSEKCMDICSTFGGSQ 230
++ + KL H A E L EK K + ++ ++ + +
Sbjct: 86 ENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMA 145
Query: 231 RERKLQQLNSSGGRAKEDPNTNKGELLKHPKDRNELQKEVF 271
+E+ Q++ S+ KE+ + ELLKH ++ E ++EV
Sbjct: 146 KEKLAQKMESN----KENRKYQEAELLKHLAEKREHEREVI 182
>pdb|3H20|A Chain A, Crystal Structure Of Primase Repb'
Length = 323
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 335 QHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGK 375
+H RTA+ EYR M K D ++ D + A+KL +G+
Sbjct: 215 RHRRTALDEYRSEMAGLVKRFGDDLSKCDFIAAQKLASRGR 255
>pdb|1MLU|A Chain A, Nitric Oxide Recombination To Double Mutants Of Myoglobin:
The Role Of Ligand Diffusion In A Fluctuating Heme
Pocket
Length = 154
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 409 DLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMN-DEDTTKGG 453
D+ HG IRL K H +L K+LK EM ED KGG
Sbjct: 21 DVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKGG 66
>pdb|1MOB|A Chain A, High-Resolution Crystal Structures Of Distal Histidine
Mutants Of Sperm Whale Myoglobin
pdb|2MGA|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
pdb|2MGB|A Chain A, High Resolution Crystal Structures Of Five Distal
Histidine Mutants Of Sperm Whale Myoglobin
Length = 154
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 409 DLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMN-DEDTTKGG 453
D+ HG IRL K H +L K+LK EM ED KGG
Sbjct: 21 DVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKGG 66
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 38/91 (41%)
Query: 334 FQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIF 393
QH++ + + +C+ + A QG H+ EK L + ++ EA E + +
Sbjct: 60 MQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLV 119
Query: 394 ETSGRNRDTKNDLLLDLHDHGAKEAIRLLKC 424
+ R+ D L + G+ + +L C
Sbjct: 120 VGTSRSHDPVVRTLRAIVQEGSVGRVSMLNC 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,146,893
Number of Sequences: 62578
Number of extensions: 571275
Number of successful extensions: 1090
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 71
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)