BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011024
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4WAB7|OPGD_ENT38 Glucans biosynthesis protein D OS=Enterobacter sp. (strain 638)
GN=mdoD PE=3 SV=1
Length = 551
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 104 VSSFLGKDYVKPAQPTNGTGLASKPLKLD-----PKEFP-MSALWGEETKP 148
+ SFLG Y + T GL+++ L +D P+EFP ++ W E KP
Sbjct: 174 IVSFLGASYFRAVDDTYQYGLSARGLAIDTFTDTPEEFPDFTSFWFETVKP 224
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4
SV=1
Length = 206
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 330 EEDSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESN 389
E + F+ L + E RG + + A A++ G+ +A +L ++GK E+ + ++
Sbjct: 3 EYEKFRALASKEAEKRGYLFQ---EAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAA 59
Query: 390 KKIF--ETSGRNRDTKNDLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIK----YLKVILE 443
I+ + S N D +DLH EA++ ++ + + I+ +L +I+
Sbjct: 60 SAIYLYKNSQCNPDE-----IDLHGLYIDEAVQAVQQRIEN-----CIRRGDNHLHIIVG 109
Query: 444 MNDEDTTKGGRRR-RVMKLLEEESIEWTEEGNAGTILIPL 482
+ + R ++++LE++SI++ E N G I + L
Sbjct: 110 RGNHSANHVEKLRPAIVRMLEQQSIKYNSEVNEGRIYVYL 149
>sp|Q7RUX3|SLT11_NEUCR Pre-mRNA-splicing factor slt-11 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=slt-11 PE=3 SV=2
Length = 385
Score = 32.3 bits (72), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 29/111 (26%)
Query: 294 RSKALGKVVSGPPEDLVPEYKANVVHLQQDNQNNNVEEDSFQHLRTAVMEYRGTMKEYCK 353
R KAL V GP ++ EY A QNN A+ E R ++EY K
Sbjct: 97 RDKALELVAPGPQSEINREYFA---------QNNE----------RAIEEGRAGVEEYEK 137
Query: 354 AAIDAFAQGDHVQAEKL--LEQGKFFYEKAREADEESNKKIFETSGRNRDT 402
A D E L L Q K ++ K RE DEE N +SG R T
Sbjct: 138 A--------DEKARELLRRLAQSKPYFRKGREVDEEGNPVNGSSSGAGRAT 180
>sp|P17311|VG16_BPT4 DNA-packaging protein Gp16 OS=Enterobacteria phage T4 GN=16 PE=4
SV=1
Length = 164
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 364 HVQAEKLLEQGKFFYEKAREADEESNKKIFETSGRNRDTKNDLLLDLH 411
H Q + L++ K F E A+ AD + ++F T T N +L LH
Sbjct: 57 HFQQQMLMDAAKIFLETAKNADSPRHMEVFATLMGQMTTTNREILKLH 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,499,051
Number of Sequences: 539616
Number of extensions: 8505323
Number of successful extensions: 20244
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 20212
Number of HSP's gapped (non-prelim): 82
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)