Query 011024
Match_columns 495
No_of_seqs 124 out of 238
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.9 1.4E-25 4.9E-30 201.7 6.7 119 362-483 12-135 (135)
2 3fau_A NEDD4-binding protein 2 99.7 5.8E-17 2E-21 133.6 7.8 76 407-483 2-82 (82)
3 2d9i_A NEDD4-binding protein 2 99.7 2.6E-16 8.9E-21 133.2 9.2 82 404-486 7-93 (96)
4 3qd7_X Uncharacterized protein 99.0 2.9E-10 9.9E-15 102.8 7.1 83 404-487 46-135 (137)
5 2zqe_A MUTS2 protein; alpha/be 98.8 2E-08 6.9E-13 83.3 8.5 73 405-483 4-82 (83)
6 2dhy_A CUE domain-containing p 97.1 0.00075 2.6E-08 54.2 6.1 47 155-204 16-62 (67)
7 1wgl_A TOLL-interacting protei 97.1 0.00094 3.2E-08 52.3 6.1 48 155-205 7-54 (59)
8 1otr_A Protein CUE2; protein-p 95.2 0.03 1E-06 42.3 5.2 42 158-202 5-46 (49)
9 1p3q_Q VPS9P, vacuolar protein 95.0 0.0098 3.4E-07 45.9 2.0 43 157-202 12-54 (54)
10 1vg5_A RSGI RUH-014, rhomboid 92.3 0.3 1E-05 39.6 6.3 36 162-202 34-69 (73)
11 1ify_A HHR23A, UV excision rep 91.0 0.3 1E-05 36.4 4.7 38 160-199 8-45 (49)
12 2g3q_A Protein YBL047C; endocy 90.3 0.45 1.5E-05 34.1 5.0 32 167-200 11-42 (43)
13 1z96_A DNA-damage, UBA-domain 88.6 0.52 1.8E-05 32.8 4.1 32 162-198 9-40 (40)
14 1otr_A Protein CUE2; protein-p 88.0 0.36 1.2E-05 36.4 3.1 31 23-53 18-48 (49)
15 1veg_A NEDD8 ultimate buster-1 87.7 1.4 4.8E-05 36.6 6.8 41 158-203 30-70 (83)
16 1wji_A Tudor domain containing 87.2 0.85 2.9E-05 35.8 5.0 36 162-202 14-49 (63)
17 1wj7_A Hypothetical protein (R 87.2 0.8 2.7E-05 39.6 5.3 41 157-202 40-80 (104)
18 2d9s_A CBL E3 ubiquitin protei 86.3 0.47 1.6E-05 36.4 2.9 34 20-53 18-51 (53)
19 1ufz_A Hypothetical protein BA 85.7 0.84 2.9E-05 38.0 4.4 37 164-202 41-77 (83)
20 1wji_A Tudor domain containing 83.3 1.8 6.2E-05 33.9 5.2 36 18-53 16-51 (63)
21 2ooa_A E3 ubiquitin-protein li 82.8 0.73 2.5E-05 35.3 2.6 30 20-49 20-49 (52)
22 2cp8_A NEXT to BRCA1 gene 1 pr 82.7 1 3.6E-05 34.6 3.5 33 171-204 20-52 (54)
23 2di0_A Activating signal coint 82.6 1.1 3.8E-05 36.3 3.8 44 156-200 9-53 (71)
24 1vg5_A RSGI RUH-014, rhomboid 82.3 1.4 4.7E-05 35.7 4.2 37 17-53 35-71 (73)
25 2knz_A Ubiquilin-4; cytoplasm, 82.0 2.8 9.6E-05 31.5 5.7 42 159-201 10-51 (53)
26 2g3q_A Protein YBL047C; endocy 80.8 0.98 3.4E-05 32.2 2.6 29 20-48 13-41 (43)
27 1z96_A DNA-damage, UBA-domain 80.4 1.1 3.6E-05 31.1 2.6 28 20-47 13-40 (40)
28 1ify_A HHR23A, UV excision rep 79.9 0.92 3.1E-05 33.7 2.3 29 20-48 17-45 (49)
29 1wiv_A UBP14, ubiquitin-specif 79.4 2.3 7.9E-05 34.1 4.7 37 162-203 34-70 (73)
30 1veg_A NEDD8 ultimate buster-1 78.4 2 6.8E-05 35.7 4.0 34 20-53 38-71 (83)
31 1vej_A Riken cDNA 4931431F19; 78.0 1.6 5.6E-05 35.4 3.4 31 23-53 41-72 (74)
32 2dak_A Ubiquitin carboxyl-term 76.9 2.3 8E-05 32.9 3.9 37 162-203 14-50 (63)
33 2knz_A Ubiquilin-4; cytoplasm, 76.8 1.7 5.7E-05 32.8 2.9 31 20-50 20-51 (53)
34 1vej_A Riken cDNA 4931431F19; 76.4 3.5 0.00012 33.5 4.9 39 162-204 34-72 (74)
35 2bwb_A Ubiquitin-like protein 76.3 4.1 0.00014 29.9 4.8 28 171-199 18-45 (46)
36 1wiv_A UBP14, ubiquitin-specif 76.1 1.9 6.5E-05 34.6 3.2 34 20-53 38-71 (73)
37 2dah_A Ubiquilin-3; UBA domain 75.7 1.5 5E-05 33.4 2.4 32 22-53 20-52 (54)
38 1q02_A Sequestosome 1; helical 74.9 4 0.00014 31.2 4.5 42 156-197 6-47 (52)
39 2cpw_A CBL-interacting protein 74.1 3.8 0.00013 32.0 4.5 36 162-202 24-60 (64)
40 2jy5_A Ubiquilin-1; UBA, alter 73.8 2.4 8.4E-05 31.7 3.1 34 162-199 17-50 (52)
41 2ekk_A UBA domain from E3 ubiq 73.8 7.1 0.00024 28.3 5.6 37 157-200 10-46 (47)
42 2dah_A Ubiquilin-3; UBA domain 72.6 3.3 0.00011 31.4 3.6 39 162-204 14-52 (54)
43 2juj_A E3 ubiquitin-protein li 72.6 3.2 0.00011 32.1 3.5 35 20-54 16-50 (56)
44 1wr1_B Ubiquitin-like protein 70.2 5.2 0.00018 30.9 4.3 37 163-200 20-56 (58)
45 2bwb_A Ubiquitin-like protein 70.1 2.8 9.6E-05 30.8 2.6 27 22-48 18-45 (46)
46 2oo9_A E3 ubiquitin-protein li 67.8 3.4 0.00012 30.8 2.6 31 20-50 13-43 (46)
47 3lvj_C Sulfurtransferase TUSA; 67.8 22 0.00076 28.4 7.8 69 405-483 10-79 (82)
48 2cp9_A EF-TS, EF-TSMT, elongat 67.4 4.1 0.00014 32.3 3.2 35 166-200 14-48 (64)
49 2cpw_A CBL-interacting protein 67.0 4.6 0.00016 31.5 3.5 34 20-53 28-62 (64)
50 2dak_A Ubiquitin carboxyl-term 66.6 3.2 0.00011 32.1 2.4 35 18-52 16-50 (63)
51 2dna_A Unnamed protein product 66.5 3.7 0.00013 32.8 2.9 31 23-53 31-62 (67)
52 2jy5_A Ubiquilin-1; UBA, alter 66.4 3.7 0.00013 30.8 2.7 29 20-48 21-50 (52)
53 1dv0_A DNA repair protein HHR2 65.7 4.2 0.00014 29.9 2.8 28 173-200 15-42 (47)
54 2cwb_A Chimera of immunoglobul 63.6 9 0.00031 33.2 5.0 39 161-200 67-105 (108)
55 2dkl_A Trinucleotide repeat co 63.2 17 0.00057 30.0 6.3 36 162-202 26-61 (85)
56 1wr1_B Ubiquitin-like protein 63.0 4.1 0.00014 31.4 2.5 26 23-48 29-55 (58)
57 1dv0_A DNA repair protein HHR2 62.7 4.5 0.00015 29.7 2.5 32 20-51 13-44 (47)
58 2oo9_A E3 ubiquitin-protein li 62.2 15 0.00051 27.4 5.1 42 160-203 4-45 (46)
59 2dna_A Unnamed protein product 59.9 11 0.00037 30.1 4.4 42 160-202 19-60 (67)
60 1wgn_A UBAP1, ubiquitin associ 57.8 6.2 0.00021 31.2 2.6 34 20-53 28-61 (63)
61 2juj_A E3 ubiquitin-protein li 56.6 20 0.00069 27.7 5.2 45 159-205 6-50 (56)
62 4ae4_A Ubiquitin-associated pr 55.9 8.4 0.00029 33.6 3.5 37 13-49 7-46 (118)
63 2ooa_A E3 ubiquitin-protein li 52.7 16 0.00055 27.9 4.1 42 157-200 8-49 (52)
64 2dag_A Ubiquitin carboxyl-term 51.9 24 0.00083 28.2 5.3 34 20-53 18-52 (74)
65 3k9o_A Ubiquitin-conjugating e 51.3 19 0.00066 33.5 5.4 39 159-199 162-200 (201)
66 1whc_A RSGI RUH-027, UBA/UBX 3 51.0 10 0.00034 29.6 2.8 36 18-53 16-52 (64)
67 1jdq_A TM006 protein, hypothet 49.7 44 0.0015 27.9 6.8 67 406-482 27-95 (98)
68 2lbc_A Ubiquitin carboxyl-term 49.5 11 0.00037 32.7 3.2 32 20-51 87-118 (126)
69 2dai_A Ubadc1, ubiquitin assoc 49.3 9.8 0.00034 31.3 2.7 34 20-53 38-71 (83)
70 3hz7_A Uncharacterized protein 49.2 39 0.0013 27.5 6.3 72 407-487 3-75 (87)
71 2lbc_A Ubiquitin carboxyl-term 49.1 17 0.00058 31.4 4.3 35 18-52 10-45 (126)
72 2dag_A Ubiquitin carboxyl-term 48.5 18 0.00063 28.9 4.1 40 159-203 11-51 (74)
73 1wj7_A Hypothetical protein (R 45.6 12 0.00041 32.3 2.7 30 21-50 50-79 (104)
74 2ekk_A UBA domain from E3 ubiq 44.4 11 0.00038 27.2 2.1 28 20-48 18-45 (47)
75 3e46_A Ubiquitin-conjugating e 43.9 15 0.00051 35.9 3.5 38 160-199 215-252 (253)
76 1whc_A RSGI RUH-027, UBA/UBX 3 43.5 21 0.00073 27.6 3.7 30 174-203 21-51 (64)
77 2e2a_A Protein (enzyme IIA); h 41.6 79 0.0027 27.0 7.3 48 345-396 18-65 (105)
78 1wcr_A PTS system, N, N'-diace 41.4 81 0.0028 26.8 7.3 40 345-385 16-55 (103)
79 2dai_A Ubadc1, ubiquitin assoc 40.5 29 0.00098 28.5 4.2 41 157-203 30-70 (83)
80 2dkl_A Trinucleotide repeat co 39.8 21 0.0007 29.5 3.2 33 20-52 30-62 (85)
81 1wgn_A UBAP1, ubiquitin associ 39.7 32 0.0011 27.2 4.1 33 172-204 29-61 (63)
82 2cp9_A EF-TS, EF-TSMT, elongat 39.4 17 0.0006 28.6 2.6 34 16-49 14-48 (64)
83 1wgl_A TOLL-interacting protei 39.0 20 0.00067 27.7 2.8 33 20-53 21-53 (59)
84 3k1s_A PTS system, cellobiose- 38.7 93 0.0032 26.8 7.3 48 345-396 20-67 (109)
85 2wb7_A PT26-6P; extra chromoso 38.0 95 0.0033 33.5 8.7 54 330-384 470-523 (526)
86 1oqy_A HHR23A, UV excision rep 36.7 21 0.00071 36.7 3.4 41 9-49 163-206 (368)
87 3l8r_A PTCA, putative PTS syst 35.9 1E+02 0.0036 27.0 7.3 50 343-396 33-82 (120)
88 2qsf_X RAD23, UV excision repa 35.8 36 0.0012 31.6 4.5 38 158-200 131-168 (171)
89 3e7l_A Transcriptional regulat 35.7 29 0.00099 26.1 3.3 31 175-206 20-50 (63)
90 2d9s_A CBL E3 ubiquitin protei 34.5 36 0.0012 26.1 3.5 39 164-204 13-51 (53)
91 4fm3_A Uncharacterized hypothe 34.2 2.2E+02 0.0074 24.2 10.6 39 345-383 31-69 (98)
92 1umq_A Photosynthetic apparatu 33.1 21 0.00072 29.0 2.2 30 176-206 43-72 (81)
93 1eh2_A EPS15; calcium binding, 31.5 67 0.0023 26.6 5.2 49 154-204 8-60 (106)
94 1eto_A FIS, factor for inversi 31.4 43 0.0015 27.9 3.9 48 158-206 33-89 (98)
95 2dam_A ETEA protein; KIAA0887, 31.1 1.1E+02 0.0037 23.9 5.9 42 155-200 16-58 (67)
96 1vek_A UBP14, ubiquitin-specif 30.7 31 0.0011 28.2 2.9 34 20-53 38-72 (84)
97 2cwb_A Chimera of immunoglobul 30.3 24 0.00083 30.5 2.2 34 17-50 72-106 (108)
98 4ae4_A Ubiquitin-associated pr 30.3 26 0.0009 30.4 2.5 32 20-51 85-116 (118)
99 2crn_A Ubash3A protein; compac 28.9 50 0.0017 25.6 3.6 37 162-203 14-51 (64)
100 2fi9_A Outer membrane protein; 27.7 51 0.0017 28.7 3.9 31 439-472 71-101 (128)
101 2chg_A Replication factor C sm 27.2 79 0.0027 27.1 5.1 48 154-201 160-208 (226)
102 2crn_A Ubash3A protein; compac 27.0 40 0.0014 26.2 2.8 34 20-53 18-52 (64)
103 3bvo_A CO-chaperone protein HS 26.7 2.6E+02 0.0087 26.2 8.8 50 337-386 153-202 (207)
104 1je3_A EC005, hypothetical 8.6 25.5 61 0.0021 27.0 3.8 67 406-482 28-95 (97)
105 2xag_B REST corepressor 1; ami 25.5 15 0.0005 39.3 0.0 45 154-200 140-185 (482)
106 1v92_A NSFL1 cofactor P47; 3-h 25.4 1.3E+02 0.0043 21.0 5.0 38 157-199 6-43 (46)
107 3uo3_A J-type CO-chaperone JAC 25.3 2.3E+02 0.008 25.9 8.1 50 336-385 122-171 (181)
108 2dal_A Protein KIAA0794; FAS a 24.3 1.3E+02 0.0046 22.8 5.3 40 157-201 16-55 (62)
109 1sxj_B Activator 1 37 kDa subu 24.2 86 0.0029 29.2 5.1 47 154-200 165-212 (323)
110 3hho_A CO-chaperone protein HS 23.9 3.3E+02 0.011 24.5 8.8 51 336-386 117-167 (174)
111 1fpo_A HSC20, chaperone protei 23.4 3.5E+02 0.012 24.4 8.8 51 336-386 113-163 (171)
112 1fi6_A EH domain protein REPS1 23.2 93 0.0032 24.3 4.4 46 156-203 4-54 (92)
113 3cpk_A Uncharacterized protein 22.6 59 0.002 29.6 3.4 31 439-472 91-121 (150)
114 1pav_A Hypothetical protein TA 22.5 31 0.001 27.0 1.3 68 405-482 6-74 (78)
115 1k6k_A ATP-dependent CLP prote 22.0 77 0.0026 26.7 3.9 37 158-200 25-61 (143)
116 1sum_B Phosphate transport sys 21.3 4.7E+02 0.016 23.8 10.5 64 332-395 7-70 (235)
117 1ntc_A Protein (nitrogen regul 21.1 28 0.00094 28.2 0.8 31 175-206 52-82 (91)
118 2gm2_A Conserved hypothetical 20.7 75 0.0026 27.9 3.6 31 439-472 67-97 (132)
119 1xwm_A PHOU, phosphate uptake 20.7 4.5E+02 0.016 23.4 9.4 61 332-392 7-67 (217)
120 1x0t_A Ribonuclease P protein 20.6 2.9E+02 0.0098 23.7 7.3 33 343-376 18-50 (120)
121 1t72_A Phosphate transport sys 20.3 4.7E+02 0.016 23.4 10.1 61 333-393 12-72 (227)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.91 E-value=1.4e-25 Score=201.73 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCeeecCCCCHHHHHHHHHHHHHhhc----CCCCcce
Q 011024 362 GDHVQAEKLLEQGKFFYEKAREADEESNKKIFETSGRNRDTKNDLLLDLHDHGAKEAIRLLKCHLSSLS----GIPTIKY 437 (495)
Q Consensus 362 Gd~a~A~~LSeqGk~~~~kmrean~~AA~~If~~r~~N~~~~~~~tIDLHGLhVkEAi~iLk~~L~~l~----~~~s~~~ 437 (495)
.-+..|++||++||.|+++|+++|++||++||+.+ |....++.+|||||++|+||+++|+..|..+. ...+...
T Consensus 12 ~~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~--N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~ 89 (135)
T 2vkc_A 12 SHMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKV--NASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPY 89 (135)
T ss_dssp -------------------CCSHHHHHHHHHHHHH--HHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 34678999999999999999999999999999999 87655579999999999999999999998652 1234578
Q ss_pred EEEEEecCCCCCCC-CcchHHHHHHHHHcCCceEeeCCCeEEEEEeC
Q 011024 438 LKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTILIPLD 483 (495)
Q Consensus 438 LrVItG~G~HS~g~-~k~kpAV~klL~eegi~~~e~~n~G~IlI~L~ 483 (495)
|+||||+|+||.++ +.++++|.++|++.+|+|.+. ++|+++|.|.
T Consensus 90 v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-g~G~~~V~Lk 135 (135)
T 2vkc_A 90 LSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKVMLK 135 (135)
T ss_dssp EEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEEC-STTEEEEECC
T ss_pred EEEEECCCcCCCCCCchHHHHHHHHHhcCCCceeeC-CCCeEEEEeC
Confidence 99999999999977 568889999999999999777 9999999884
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.68 E-value=5.8e-17 Score=133.55 Aligned_cols=76 Identities=25% Similarity=0.279 Sum_probs=59.2
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEecCCCCCCC-CcchHHHHHHHHHcCCceEeeCCCeEEEEE
Q 011024 407 LLDLHDHGAKEAIRLLKCHLSSLSG----IPTIKYLKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTILIP 481 (495)
Q Consensus 407 tIDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~LrVItG~G~HS~g~-~k~kpAV~klL~eegi~~~e~~n~G~IlI~ 481 (495)
+|||||++|+||+++|++.|..+.. ..+...++||||+|+||.++ +.++++|.++|++++|+|.+. |+|+|+|.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-n~G~l~V~ 80 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKVM 80 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTCCEEEE-ETTEEEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceeeC-CCEEEEEE
Confidence 6999999999999999999987642 02347899999999999976 568999999999999999887 99999998
Q ss_pred eC
Q 011024 482 LD 483 (495)
Q Consensus 482 L~ 483 (495)
|+
T Consensus 81 l~ 82 (82)
T 3fau_A 81 LK 82 (82)
T ss_dssp C-
T ss_pred eC
Confidence 84
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.65 E-value=2.6e-16 Score=133.22 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCeeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEecCCCCCCC-CcchHHHHHHHHHcCCceEeeCCCeEE
Q 011024 404 NDLLLDLHDHGAKEAIRLLKCHLSSLSG----IPTIKYLKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTI 478 (495)
Q Consensus 404 ~~~tIDLHGLhVkEAi~iLk~~L~~l~~----~~s~~~LrVItG~G~HS~g~-~k~kpAV~klL~eegi~~~e~~n~G~I 478 (495)
.+.+|||||++|+||++.|+..|..+.. ......++||||+|+||.++ +.++++|.+||++.+++|.+. ++|++
T Consensus 7 ~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~eg-g~Ga~ 85 (96)
T 2d9i_A 7 GQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCL 85 (96)
T ss_dssp SCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC-STTCE
T ss_pred CCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccccC-CCcEE
Confidence 4789999999999999999999986531 23457899999999999977 678889999999999999877 99999
Q ss_pred EEEeCCCC
Q 011024 479 LIPLDKVN 486 (495)
Q Consensus 479 lI~L~g~~ 486 (495)
+|.|....
T Consensus 86 ~V~L~~~~ 93 (96)
T 2d9i_A 86 KVMLKSGP 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEEccCC
Confidence 99998643
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.03 E-value=2.9e-10 Score=102.78 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCC-cchHHHHHHHHHcCC--ceEee----CCCe
Q 011024 404 NDLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKG-GRRRRVMKLLEEESI--EWTEE----GNAG 476 (495)
Q Consensus 404 ~~~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~-k~kpAV~klL~eegi--~~~e~----~n~G 476 (495)
.+.+|||||++++||+..|...|..+... +...++||+|+|.||.++. .++++|.++|.+..+ .|+.. .+.|
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~-g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~G 124 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALAD-GLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSG 124 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHHT-TCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGG
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCE
Confidence 46899999999999999999999876533 3478999999999998765 578899999999875 46542 2899
Q ss_pred EEEEEeCCCCC
Q 011024 477 TILIPLDKVNP 487 (495)
Q Consensus 477 ~IlI~L~g~~p 487 (495)
+++|.|.....
T Consensus 125 at~V~Lr~~~~ 135 (137)
T 3qd7_X 125 ACYVALRKTAQ 135 (137)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEEchhh
Confidence 99999987543
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=98.77 E-value=2e-08 Score=83.33 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=60.7
Q ss_pred CCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCC--ceEeeC----CCeEE
Q 011024 405 DLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESI--EWTEEG----NAGTI 478 (495)
Q Consensus 405 ~~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi--~~~e~~----n~G~I 478 (495)
+.+|||||+.++||...|...|..+... ....++||+|+|. +.++++|.++|.+... .|+... +.|++
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~-g~~~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat 77 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARAL-GLSTLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVT 77 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHT-TCSEEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEE
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEE
Confidence 5789999999999999999999876532 3478999999997 4689999999999875 466532 57999
Q ss_pred EEEeC
Q 011024 479 LIPLD 483 (495)
Q Consensus 479 lI~L~ 483 (495)
+|.|.
T Consensus 78 ~V~Lk 82 (83)
T 2zqe_A 78 VVALR 82 (83)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99885
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00075 Score=54.19 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 155 HLQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 155 ~~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
...+++.+.|-.|+- +|+..||+.||..||+||+.+++.||.++.-.
T Consensus 16 ~~~~~~v~~L~~MFP---~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFP---NMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CCSHHHHHHHHHHCS---SSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 456777888999933 89999999999999999999999999998653
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.08 E-value=0.00094 Score=52.26 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccccc
Q 011024 155 HLQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAETL 205 (495)
Q Consensus 155 ~~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~ 205 (495)
...++.-+.|-.|+- .++..+|+.||..|++||+.+++.||.++....
T Consensus 7 ~~~ee~l~~L~emFP---~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFP---NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp SSCHHHHHHHHHHCS---SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 344556666778832 799999999999999999999999999998764
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.17 E-value=0.03 Score=42.31 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
++=.++|.-|+= .++..+||-||..|++|++.|++.||.+..
T Consensus 5 e~~v~~L~EMFP---~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFP---AISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCS---SSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 556678888854 699999999999999999999999999843
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=94.96 E-value=0.0098 Score=45.92 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
++++=+=|-.|+- +||.+||++||-.++|++..++|.||.||.
T Consensus 12 ~~~~~~~L~~MFP---~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 12 RKDTLNTLQNMFP---DMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHHHHcc---cCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 3444445677765 699999999999999999999999999873
No 10
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.25 E-value=0.3 Score=39.61 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
+=|..| || +++.++..|..|++|+++|++.||+-..
T Consensus 34 ~~L~eM---GF--~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 34 QKLVAM---GF--DRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHTT---TC--CHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345555 55 8999999999999999999999997543
No 11
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.03 E-value=0.3 Score=36.35 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
-|+-|..+..=|| ++..++..|..|++|+++|++.|+.
T Consensus 8 ~~~~i~~L~~MGF--~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGY--ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3444444444477 9999999999999999999999987
No 12
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.32 E-value=0.45 Score=34.07 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=26.6
Q ss_pred HhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 167 LLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 167 MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
+..=|| +++.++..|..|++|++.|++.|++.
T Consensus 11 L~~MGF--~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 11 LSGMGF--TEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHTTTS--CHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHcCC--CHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 333356 68899999999999999999999863
No 13
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=88.56 E-value=0.52 Score=32.77 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHH
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLI 198 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LL 198 (495)
+-|..| || +...++..|..|++|++.|++.|+
T Consensus 9 ~~L~~m---Gf--~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 9 AQLVSM---GF--DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHT---TC--CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 335666 56 678889999999999999999885
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=88.03 E-value=0.36 Score=36.43 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 23 FTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 23 fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
++..+|.+++..|+||+|.|.++|..+...+
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~~ 48 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKENDDK 48 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhccccc
Confidence 6889999999999999999999999996543
No 15
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.73 E-value=1.4 Score=36.59 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
++.=+=|..| || ++..++..|.+|+.|+++|++.|+...+.
T Consensus 30 ee~I~~Lv~M---GF--~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYM---GF--DTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHH---SC--CHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4444677788 55 89999999999999999999999987664
No 16
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.25 E-value=0.85 Score=35.76 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=29.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
+-|..| || ++..++..|..|++|++.|++.||.-..
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 14 KHITEM---GF--SKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHTT---TC--CHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345555 66 7888899999999999999999998654
No 17
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.22 E-value=0.8 Score=39.62 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
.++| +.|.-|- ..+.+.+|.+|-.|++|+.+|++.||+--.
T Consensus 40 eekV-k~L~Emt----G~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKV-KQLIDIT----GKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHH-HHHHHHT----CCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHH-HHHHHhh----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3444 6777774 488999999999999999999999997653
No 18
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.27 E-value=0.47 Score=36.44 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
+-+|+-+++-.|...|++|++.|+.||......+
T Consensus 18 ~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~ 51 (53)
T 2d9s_A 18 SQGYSYQDIQKALVIAHNNIEMAKNILREFSGPS 51 (53)
T ss_dssp HHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTSCS
T ss_pred HcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcccC
Confidence 6679999999999999999999999999776543
No 19
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=85.66 E-value=0.84 Score=38.03 Aligned_cols=37 Identities=22% Similarity=0.536 Sum_probs=30.4
Q ss_pred HHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 164 LFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 164 L~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
+-..||| -++...++++.=.|.||++||||.+|+.+.
T Consensus 41 iR~VlGd--sV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 41 MREVLGD--AVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHTTT--TSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcc--cCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 3456888 577777788888899999999999998765
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.31 E-value=1.8 Score=33.86 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=31.1
Q ss_pred ccCCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 18 LNGSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 18 l~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
|..-+|+-+++..|++..++|++.|.+.|..-..+.
T Consensus 16 L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 16 ITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred HHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 336779999999999999999999999999776544
No 21
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=82.84 E-value=0.73 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=28.0
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcc
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (495)
+-+||-+++-.|...|++|++.|+.||...
T Consensus 20 ~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 20 GEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 778999999999999999999999999764
No 22
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.72 E-value=1 Score=34.62 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=27.8
Q ss_pred ccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 171 GFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 171 gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
|| -|...-..+|.++||||+++++.||.+..-+
T Consensus 20 GF-~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 20 GF-CDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp TC-CCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CC-CcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 45 3677888999999999999999999887554
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.62 E-value=1.1 Score=36.27 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHhcCcc-ccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 156 LQKEMEDFLFKLLGEGF-QLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 156 ~~~d~E~FL~~MLG~gf-~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
...++++= .+++-|=| .|+.+.|+.+|..|++|||..+..||+=
T Consensus 9 ~~~~l~s~-I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 9 CGVELDSL-ISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSHHHHHH-HHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cHHHHHHH-HHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34444432 34445556 7999999999999999999999999984
No 24
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=82.26 E-value=1.4 Score=35.73 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=31.5
Q ss_pred hccCCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 17 ALNGSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 17 ~l~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
-|..=+|+-+++..|++.+++|++.|.++|.+-+++.
T Consensus 35 ~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 35 KLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred HHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 3335569999999999999999999999999876653
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=82.02 E-value=2.8 Score=31.49 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 011024 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (495)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (495)
+.++-|-.+..=||. ++..++.+|..|+.|+++|++.|+...
T Consensus 10 ~~~~~l~~L~~MGF~-~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 10 RFQQQLEQLNSMGFI-NREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTTTCC-CHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 344445444444552 788999999999999999999999753
No 26
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=80.79 E-value=0.98 Score=32.24 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhc
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
.-+|+-+++..|++..++|++.|.+.|.+
T Consensus 13 ~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 13 GMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 55699999999999999999999999974
No 27
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=80.37 E-value=1.1 Score=31.14 Aligned_cols=28 Identities=29% Similarity=0.164 Sum_probs=25.0
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhh
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLC 47 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~ 47 (495)
.-+|+-+++..|+...++|++.|.+.|.
T Consensus 13 ~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 13 SMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4469999999999999999999999874
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.94 E-value=0.92 Score=33.67 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhc
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
.-+|+-+++..|++.+++|++.|.+.|.+
T Consensus 17 ~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 17 SMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55699999999999999999999999986
No 29
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=79.40 E-value=2.3 Score=34.14 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=30.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
+=|..| || ++..++..|..|+.|++.|++.|++....
T Consensus 34 ~~L~~M---GF--~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 34 DTLLSF---GF--AEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 445566 56 78999999999999999999999986543
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.41 E-value=2 Score=35.68 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
.=+|+-+++..|++.+++|++.|+|.|..-++..
T Consensus 38 ~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 38 YMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp HHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 3349999999999999999999999999877743
No 31
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.00 E-value=1.6 Score=35.40 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=26.9
Q ss_pred cC-HHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 23 FT-MQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 23 fS-l~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
|+ -+.+..|.+.++||++.|.|+|....+.+
T Consensus 41 F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 41 FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 64 67779999999999999999999877654
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.92 E-value=2.3 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=30.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
+=|..| || ++..++..|-.|++|++.|++.||.....
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 14 TTIVSM---GF--SRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 445556 56 68999999999999999999999986553
No 33
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=76.82 E-value=1.7 Score=32.76 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=27.1
Q ss_pred CCcc-CHHHHHHHHHHhCCCchhhhhhhhccc
Q 011024 20 GSVF-TMQEIALACRNAGRNPDLAGESLCDKQ 50 (495)
Q Consensus 20 gs~f-Sl~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (495)
.=+| .-+.+..|++.++||++.|.++|....
T Consensus 20 ~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 20 SMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4458 888899999999999999999998754
No 34
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.42 E-value=3.5 Score=33.47 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
+=|..| || -++..++.+|..++.||++|++.|+..-+.+
T Consensus 34 ~qL~eM---GF-~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 34 EELKAL---GF-ANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHH---TC-CCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHc---CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 345566 66 5788999999999999999999999865443
No 35
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=76.32 E-value=4.1 Score=29.87 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred ccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 171 GFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 171 gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
|| -+...++.+|..|+.||++|++.|+.
T Consensus 18 GF-~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 18 GF-FDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp TC-CCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred CC-CcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 66 46788899999999999999999985
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=76.07 E-value=1.9 Score=34.64 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
.-+|+-+++..|++..++|++.|.+.|.+-++++
T Consensus 38 ~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 38 SFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 4459999999999999999999999999877654
No 37
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.74 E-value=1.5 Score=33.40 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=27.0
Q ss_pred ccCHHH-HHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 22 VFTMQE-IALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 22 ~fSl~~-ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
+|+=++ +..|...++||++.|.++|....+..
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 376665 68999999999999999999876644
No 38
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=74.89 E-value=4 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHH
Q 011024 156 LQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKL 197 (495)
Q Consensus 156 ~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~L 197 (495)
....+++=|-.||.=||.=.=+-....|..+.|||-++||.|
T Consensus 6 ~D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 355688889999999999999999999999999999999986
No 39
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.14 E-value=3.8 Score=31.99 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=29.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHcccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSA 202 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~ 202 (495)
+=|..| || ++..++..|-.||. |++.|++-||+...
T Consensus 24 ~~L~~M---GF--~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 24 DVLLSM---GF--PRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 445566 55 77999999999998 99999999997654
No 40
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=73.81 E-value=2.4 Score=31.75 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=27.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
+-|..| || -++..++.+|..||.|+++|++.|+.
T Consensus 17 ~~L~~M---GF-~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 17 EQLSAM---GF-LNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHT---TC-CCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHc---CC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 445555 44 17889999999999999999999985
No 41
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.76 E-value=7.1 Score=28.29 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
.+.+ +=|..| | .+...++..|-.|| |++.|++.||+.
T Consensus 10 ~~~v-~~L~~M---G--F~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQL-QQLMDM---G--FTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHH-HHHHHH---H--CCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHH-HHHHHc---C--CCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 3444 445556 4 46688999999998 999999999864
No 42
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.58 E-value=3.3 Score=31.45 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
+-|..| ||. +...++.+|..|+.||++|++.|+..-..+
T Consensus 14 ~~L~~M---GF~-d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 14 EQLRSM---GFL-NREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHH---TCC-CHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHc---CCC-cHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 556777 552 445678999999999999999999765443
No 43
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=72.56 E-value=3.2 Score=32.14 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANAS 54 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~s 54 (495)
+-+||-+++-.|...|+-|++.|..||....-.+|
T Consensus 16 smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~ 50 (56)
T 2juj_A 16 SQGYSYQDIQKALVIAQNNIEMAKNILREFVSISS 50 (56)
T ss_dssp TTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCCCC
T ss_pred HcCCCHHHHHHHHHHhcccHHHHHHHHHHHHccCC
Confidence 66799999999999999999999999998866543
No 44
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=70.23 E-value=5.2 Score=30.85 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 163 FLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 163 FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
-|-.+.-=|| -+...++.+|..++.||++|+|.|+.-
T Consensus 20 qi~~L~~MGF-~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 20 QLRQLNDMGF-FDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTC-CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHcCC-CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3333333367 568889999999999999999999863
No 45
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=70.11 E-value=2.8 Score=30.78 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred ccC-HHHHHHHHHHhCCCchhhhhhhhc
Q 011024 22 VFT-MQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 22 ~fS-l~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
+|+ -+.+..|.+.++||++.|.|.|.+
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 365 455799999999999999999975
No 46
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=67.80 E-value=3.4 Score=30.83 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhccc
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQ 50 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (495)
+-+|+-+++-.|.-.|+-|++.|+.||....
T Consensus 13 s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 13 SQGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp HTTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 4569999999999999999999999998653
No 47
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=67.75 E-value=22 Score=28.42 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCCceEee-CCCeEEEEEeC
Q 011024 405 DLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE-GNAGTILIPLD 483 (495)
Q Consensus 405 ~~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~-~n~G~IlI~L~ 483 (495)
..+||+-|+.==+-+-.++..|..+. ....|.|++-. .. -..-|..||++.|+++... ...|.+.|.|.
T Consensus 10 ~~~lD~rGl~CP~Pvl~~kkal~~l~---~G~~l~V~~dd------~~-a~~di~~~~~~~G~~~~~~~~~~~~~~i~I~ 79 (82)
T 3lvj_C 10 DHTLDALGLRCPEPVMMVRKTVRNMQ---PGETLLIIADD------PA-TTRDIPGFCTFMEHELVAKETDGLPYRYLIR 79 (82)
T ss_dssp SEEEECTTCCTTHHHHHHHHHHHTSC---TTCEEEEEECC------TT-HHHHHHHHHHHTTCEEEEEECSSSSEEEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHhCC---CCCEEEEEECC------cc-HHHHHHHHHHHCCCEEEEEEecCCEEEEEEE
Confidence 57899999999888888999888764 23679999732 11 2346889999999998654 36676666553
No 48
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=67.36 E-value=4.1 Score=32.28 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 166 KLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 166 ~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
+.|=+-...+|.-.+..|-.|++||++|++.|-..
T Consensus 14 k~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 14 MKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34445556788999999999999999999998644
No 49
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.04 E-value=4.6 Score=31.54 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=29.7
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (495)
.-+|+-+++..|++..++ |++.|.+.|.+-.+++
T Consensus 28 ~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 28 SMGFPRARAQKALASTGGRSVQTACDWLFSHSGPS 62 (64)
T ss_dssp HHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCC
T ss_pred HcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 445999999999999998 9999999999876654
No 50
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.59 E-value=3.2 Score=32.14 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=29.6
Q ss_pred ccCCccCHHHHHHHHHHhCCCchhhhhhhhcccCC
Q 011024 18 LNGSVFTMQEIALACRNAGRNPDLAGESLCDKQAN 52 (495)
Q Consensus 18 l~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 52 (495)
|..-+|+-+++..|++..++|++.|.+.|..-.++
T Consensus 16 L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 16 IVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 33455999999999999999999999999975543
No 51
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.48 E-value=3.7 Score=32.79 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=25.5
Q ss_pred cCHH-HHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 23 FTMQ-EIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 23 fSl~-~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
|+=+ .+..|.+.++||++.|.|+|....++.
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 5444 448999999999999999999876653
No 52
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=66.39 E-value=3.7 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=25.4
Q ss_pred CCcc-CHHHHHHHHHHhCCCchhhhhhhhc
Q 011024 20 GSVF-TMQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 20 gs~f-Sl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
.=+| +-+.+..|+..++||++.|.+.|.+
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4448 8888899999999999999999975
No 53
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=65.71 E-value=4.2 Score=29.89 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 173 QLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 173 ~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
..++..++++|-.||.|++.|++-|+..
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4688999999999999999999999754
No 54
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=63.59 E-value=9 Score=33.17 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 161 EDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 161 E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
++=|-+|.-=|| -+...++.+|-.|+.||++|+|.|+..
T Consensus 67 ~~qL~qL~eMGF-~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 67 QPQLQQLRDMGI-QDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHTTTC-CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 445555555567 567899999999999999999999964
No 55
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.20 E-value=17 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=29.8
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
+=|..| || ++..++..|-.|+.|++.|++.|++...
T Consensus 26 ~qL~~M---GF--~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 26 KQLTDM---GF--PREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 334555 55 8899999999999999999999998764
No 56
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.05 E-value=4.1 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.0
Q ss_pred cC-HHHHHHHHHHhCCCchhhhhhhhc
Q 011024 23 FT-MQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 23 fS-l~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
|+ -+.+..|.+.++||++.|.|+|..
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 65 567799999999999999999985
No 57
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=62.68 E-value=4.5 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (495)
.-+|+-..+-.||...++|+++|++.|.+...
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 66799999999999999999999999987544
No 58
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=62.21 E-value=15 Score=27.42 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
.|.-+-.....|| |+.-|++.|..+..||+.|-+-|+.+...
T Consensus 4 ~e~~I~~L~s~Gf--~~~~~~rAL~ia~Nnie~A~nIL~ef~~~ 45 (46)
T 2oo9_A 4 LSSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFAAA 45 (46)
T ss_dssp HHHHHHHHHHTTB--CHHHHHHHHHHTTTCHHHHHHHHHHHCCB
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 3455556666676 68899999999999999999999987643
No 59
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.94 E-value=11 Score=30.09 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 011024 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (495)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (495)
-++-|-.|.-=|| -+..-+...|..|+.||++|+|.|+..-.
T Consensus 19 y~~ql~qL~~MGF-~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQAMGF-VNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHHHTC-CCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3444555555577 67778889999999999999999997643
No 60
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.81 E-value=6.2 Score=31.24 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
+=+||-+++..|...-|+|++.|+|-|++-.+++
T Consensus 28 sMGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 28 NMGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 4569999999999999999999999999877754
No 61
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=56.63 E-value=20 Score=27.69 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccccc
Q 011024 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAETL 205 (495)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~ 205 (495)
-.|+-+-.....|| |+.-+++.|..+..||+.|-+-||.|.....
T Consensus 6 p~e~~Ia~L~smGf--sr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~ 50 (56)
T 2juj_A 6 QLSSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFVSISS 50 (56)
T ss_dssp HHHHHHHHHHTTTC--CHHHHHHHHHHTTTCSHHHHHHHHHSCCCCC
T ss_pred CChHHHHHHHHcCC--CHHHHHHHHHHhcccHHHHHHHHHHHHccCC
Confidence 34555666667777 7899999999999999999999999987653
No 62
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=55.86 E-value=8.4 Score=33.60 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=30.3
Q ss_pred hhhhhcc---CCccCHHHHHHHHHHhCCCchhhhhhhhcc
Q 011024 13 IEEKALN---GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (495)
Q Consensus 13 ~~~k~l~---gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (495)
.+...|+ +=+|+...+..|...-|.|++.|-+.|..-
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3435555 667999999999999999999999999865
No 63
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=52.71 E-value=16 Score=27.89 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
.+.+|+-+-+..+-|| |+.-+.+.|.++..||+.|-.-||.+
T Consensus 8 ~~~~~~~Ia~Lm~mGF--sr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGY--AFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp ---CHHHHHHHHHTTC--CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4556677777777777 79999999999999999999999987
No 64
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.88 E-value=24 Score=28.18 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (495)
.-+|+-+.+..|++..++ |++.|.+.|.+-.+++
T Consensus 18 ~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 18 EMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp HHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred HcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 445999999999999997 8999999999876654
No 65
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=51.34 E-value=19 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
+.|+-+.++..-| .+++-++.+|-.|++|++.|++.||+
T Consensus 162 ~~eekV~~l~~MG--f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMG--FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTT--CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4455555554444 46788889999999999999999986
No 66
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.05 E-value=10 Score=29.56 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=30.8
Q ss_pred ccCCccCHHHHHHHHHHh-CCCchhhhhhhhcccCCC
Q 011024 18 LNGSVFTMQEIALACRNA-GRNPDLAGESLCDKQANA 53 (495)
Q Consensus 18 l~gs~fSl~~ia~Ay~~A-~~d~~~A~eiL~~~~~~~ 53 (495)
|-.-+|+-+.+..|++.. ++|++.|.+.|.+-.+++
T Consensus 16 L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 16 LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp HHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 336679999999999999 699999999999876654
No 67
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=49.75 E-value=44 Score=27.88 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=49.0
Q ss_pred CeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCCceEeeC-C-CeEEEEEe
Q 011024 406 LLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEEG-N-AGTILIPL 482 (495)
Q Consensus 406 ~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~~-n-~G~IlI~L 482 (495)
.+||+-||.==.-+-.++..|..+.. ...|.|++-. .. -..-|.+||++.|+.+.... . .|.+.|.|
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---Ge~L~Vl~dd------~~-a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I 95 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---GEILEVWIDY------PM-SKERIPETVKKLGHEVLEIEEVGPSEWKIYI 95 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---TCEEEEEESS------CT-HHHHHHHHHHHSSCCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECC------cc-HHHHHHHHHHHCCCEEEEEEEecCCEEEEEE
Confidence 46999999988888888888887642 3679998732 22 23458899999999987543 3 57666555
No 68
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=49.54 E-value=11 Score=32.67 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (495)
.-+|+-+++..|++..++|++.|.+.|.+..+
T Consensus 87 ~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 87 SMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 55599999999999999999999999987655
No 69
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.32 E-value=9.8 Score=31.27 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
.-+|+-+.+..|++..++|++.|.+.|.+-.+++
T Consensus 38 ~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 38 EMGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4559999999999999999999999999876654
No 70
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=49.21 E-value=39 Score=27.48 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=51.6
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCCceEeeC-CCeEEEEEeCCC
Q 011024 407 LLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEEG-NAGTILIPLDKV 485 (495)
Q Consensus 407 tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~~-n~G~IlI~L~g~ 485 (495)
+||+-|+.==.-+-.++..|..+.. ....|.|++-.. .-..-|..||++.|+.+.... ..|.+.|.|...
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~--~G~~L~V~~dd~-------~a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~Kg 73 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGE--AGGVVTVLVDND-------ISRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVAG 73 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGG--GCCEEEEEESSH-------HHHHHHHHHHHHHTCEEEEEECGGGCEEEEEESC
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccC--CCCEEEEEECCc-------cHHHHHHHHHHHCCCEEEEEEecCCEEEEEEEEC
Confidence 6999999888888888888887630 126799987321 123468899999999886543 678877777654
Q ss_pred CC
Q 011024 486 NP 487 (495)
Q Consensus 486 ~p 487 (495)
.+
T Consensus 74 ~~ 75 (87)
T 3hz7_A 74 EG 75 (87)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 71
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=49.10 E-value=17 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=29.3
Q ss_pred ccCCccCHHHHHHHHHHhCC-CchhhhhhhhcccCC
Q 011024 18 LNGSVFTMQEIALACRNAGR-NPDLAGESLCDKQAN 52 (495)
Q Consensus 18 l~gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~ 52 (495)
|-.-+|+...+..|.+.-++ |++.|.+.|..-...
T Consensus 10 L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 10 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 33678999999999999965 999999999876554
No 72
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.48 E-value=18 Score=28.88 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHccccc
Q 011024 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSAE 203 (495)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~~ 203 (495)
++=+=|..| || ++..++..|-.||. |++.|++.||.....
T Consensus 11 ~~v~~L~~M---GF--~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 11 SVIIQLVEM---GF--PMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHH---SC--CHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc---CC--CHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 333445566 55 58999999999996 899999999987654
No 73
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.64 E-value=12 Score=32.29 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=27.0
Q ss_pred CccCHHHHHHHHHHhCCCchhhhhhhhccc
Q 011024 21 SVFTMQEIALACRNAGRNPDLAGESLCDKQ 50 (495)
Q Consensus 21 s~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (495)
++||-+++-.|+.++++|++.|-+.|.+-.
T Consensus 50 tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 50 TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 359999999999999999999999998654
No 74
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.42 E-value=11 Score=27.21 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=24.8
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhc
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (495)
.-+|+-+.+..|++..| |++.|.+.|.+
T Consensus 18 ~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 18 DMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 55599999999999996 99999999874
No 75
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=43.90 E-value=15 Score=35.89 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
.++.+..+.-- ..+.+-++.+|..|++|++.|++.||+
T Consensus 215 ~~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 215 YTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444444333 457788888999999999999999986
No 76
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.46 E-value=21 Score=27.63 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHhcC-CcHHHHHHHHHccccc
Q 011024 174 LSRDVIREVLDSCG-YDMQKSMSKLIDHSAE 203 (495)
Q Consensus 174 L~~~vIr~VL~~cG-yDv~ks~d~LLd~s~~ 203 (495)
.++..++..|-.|| .|++.|++.||+....
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 45799999999995 9999999999987554
No 77
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=41.60 E-value=79 Score=26.99 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011024 345 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 396 (495)
Q Consensus 345 ~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~If~~r 396 (495)
+..|. ++-+|-++.+.||.+.|..+.++|+.....+...+ .+-|-.+-
T Consensus 18 G~ArS-~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q---t~liq~Ea 65 (105)
T 2e2a_A 18 GDARS-KLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQ---TGMLAREA 65 (105)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 34444 55568889999999999999999998666655554 34555544
No 78
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=41.40 E-value=81 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 011024 345 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREAD 385 (495)
Q Consensus 345 ~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean 385 (495)
+..|. ++-+|-++.+.||.+.|..+.++|+.....+...+
T Consensus 16 G~Ars-~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q 55 (103)
T 1wcr_A 16 GQARS-LAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQ 55 (103)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 55568889999999999999999998766665554
No 79
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.52 E-value=29 Score=28.46 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
.+.+ +=|..| | .+...++..|-.|+.|++.|++.|+.....
T Consensus 30 e~~i-~~L~~M---G--F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 30 EAAL-RQLTEM---G--FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHH-HHHHHH---T--CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred HHHH-HHHHHc---C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 3334 445566 4 466899999999999999999999987543
No 80
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.80 E-value=21 Score=29.49 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQAN 52 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 52 (495)
.-+|+-+.+..|++..++|++.|.+.|.+-..+
T Consensus 30 ~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 30 DMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 445999999999999999999999999986554
No 81
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.67 E-value=32 Score=27.16 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 172 FQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 172 f~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
+..+....+-.|..||-||++|+|-|....+-+
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 356788899999999999999999998765543
No 82
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=39.39 E-value=17 Score=28.65 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=27.9
Q ss_pred hhcc-CCccCHHHHHHHHHHhCCCchhhhhhhhcc
Q 011024 16 KALN-GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (495)
Q Consensus 16 k~l~-gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (495)
+.|. =+..++.|.-.|..+++||++.|-++|...
T Consensus 14 k~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 14 MKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444 334789999999999999999999999854
No 83
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.04 E-value=20 Score=27.70 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (495)
-. ++.+.|.++|..-+||++.|-+.|..|+...
T Consensus 21 P~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 21 PN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp SS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 45 7889999999999999999999999998865
No 84
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=38.65 E-value=93 Score=26.77 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011024 345 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 396 (495)
Q Consensus 345 ~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~If~~r 396 (495)
+..|..| -+|-++.+.||.+.|..+.++|+....++...+- +-|-.+-
T Consensus 20 G~Ars~~-~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT---~Liq~Ea 67 (109)
T 3k1s_A 20 GNARSFA-MEALQFAKQGKMAEADEAMVKAKEAINEAHHFQT---ELIQSEA 67 (109)
T ss_dssp HHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 4445544 4588888999999999999999887766665543 4454444
No 85
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=38.04 E-value=95 Score=33.49 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 011024 330 EEDSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREA 384 (495)
Q Consensus 330 ~d~~Y~~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrea 384 (495)
+-.+|..+-..|.. ...-..||.+|++-+--|+.+.|..|..+++++.++++++
T Consensus 470 d~~~v~~~~~~ak~-yE~aGDyy~~AA~k~~yG~~eqAe~l~~~A~~~~~~~~eY 523 (526)
T 2wb7_A 470 DYQMFLNYLNAAKK-HEMAGDYYVNAARKALNGDLEQAKIDAEKAKEYSNLAKEY 523 (526)
T ss_dssp SHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhh-hhhccHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhHhhc
Confidence 35677777778888 5777888888888899999999999999999999988875
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=36.75 E-value=21 Score=36.74 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCchhhhhcc---CCccCHHHHHHHHHHhCCCchhhhhhhhcc
Q 011024 9 LNYDIEEKALN---GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (495)
Q Consensus 9 ~~~d~~~k~l~---gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (495)
..+++.+..+. .=+|+-+++..|.+.+++|++.|.|+|+.-
T Consensus 163 ~~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 163 VTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp CCTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred cCCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34444445555 555999999999999999999999999864
No 87
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=35.92 E-value=1e+02 Score=26.96 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011024 343 EYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 396 (495)
Q Consensus 343 ~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~If~~r 396 (495)
.-...|.. +-+|-++.+.||.+.|..+.++|+....++..++ .+-|-.+-
T Consensus 33 ~aG~ARS~-~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~Q---T~Liq~EA 82 (120)
T 3l8r_A 33 NSGNARSI-VHEAFDAMREKNYILAEQKLQEANDELLKAHQAQ---TDLLQEYA 82 (120)
T ss_dssp HHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 33455554 4558888899999999999999988776666554 34554444
No 88
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=35.76 E-value=36 Score=31.62 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
+++=+=|+.| || +++.|.+||-.|+.|++.+...||..
T Consensus 131 ~eaI~rL~~m---GF--~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL---GF--ERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT---TC--CHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3444567777 44 99999999999999999999999974
No 89
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.71 E-value=29 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 011024 175 SRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (495)
Q Consensus 175 ~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (495)
.+.+|+++|.+||+++.++-. +|.+|-.++.
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~-~LGisr~tL~ 50 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAE-EIGIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHH-HHTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHHHH
Confidence 478899999999999988765 6777776654
No 90
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.49 E-value=36 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 164 LFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 164 L~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
+-+..+.|| ++.-+.+.|.++..||+.|-+-|+.+....
T Consensus 13 I~~L~~lGF--~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~ 51 (53)
T 2d9s_A 13 IERLMSQGY--SYQDIQKALVIAHNNIEMAKNILREFSGPS 51 (53)
T ss_dssp HHHHHHHTC--CHHHHHHHHHHTTTCHHHHHHHHHHHTSCS
T ss_pred HHHHHHcCC--CHHHHHHHHHHhcCCHHHHHHHHHHhcccC
Confidence 556666666 789999999999999999999999887654
No 91
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=34.17 E-value=2.2e+02 Score=24.20 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 011024 345 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKARE 383 (495)
Q Consensus 345 ~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmre 383 (495)
+..-...|.+|..|...++...|.+|++|+..-.+++..
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeA 69 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAES 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHH
Confidence 345566789999999999999999999999877666653
No 92
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=33.06 E-value=21 Score=29.03 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 011024 176 RDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (495)
Q Consensus 176 ~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (495)
+.+|+++|.+||+++.++-. +|.++-.++.
T Consensus 43 r~~I~~aL~~~~GN~s~AA~-~LGISR~TLy 72 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETAR-RLNMHRRTLQ 72 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH-HhCCCHHHHH
Confidence 57899999999999998754 6788777654
No 93
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=31.46 E-value=67 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=37.6
Q ss_pred ccchhHHHHH--HHHHh--cCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 011024 154 DHLQKEMEDF--LFKLL--GEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (495)
Q Consensus 154 ~~~~~d~E~F--L~~ML--G~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (495)
.+..++.++| +|+++ |+| .|+.+-++.||.++|.. +.-++.++...+.+
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG-~Is~~el~~~l~~~gl~-~~el~~i~~~~D~d 60 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNG-FLSGDKVKPVLLNSKLP-VDILGRVWELSDID 60 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSS-CCBHHHHHHHHHTTTCC-HHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHhCCCCC-eEcHHHHHHHHHHcCCC-HHHHHHHHHHHcCC
Confidence 3457788887 77776 566 69999999999999977 45678888776654
No 94
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=31.44 E-value=43 Score=27.95 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCcc---------ccCHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 011024 158 KEMEDFLFKLLGEGF---------QLSRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (495)
Q Consensus 158 ~d~E~FL~~MLG~gf---------~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (495)
.-+|.|+-.+-|+.- ++.+.+|+++|..||+++.++-. +|.++-.++.
T Consensus 33 ~~l~~~~~~L~g~~~~~~l~~~l~~~Er~~I~~aL~~~~gn~~~AA~-~LGIsR~TL~ 89 (98)
T 1eto_A 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTLGNQTRAAL-MMGINRGTLR 89 (98)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhCCCHHHHH
Confidence 445666555545442 34578899999999999998754 6777776654
No 95
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.10 E-value=1.1e+02 Score=23.89 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 155 HLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 155 ~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
..+++.-+-.+.+.| . +..+-+..|..+++|++.|+...++.
T Consensus 16 ~~~~e~i~qF~~ITg~~----d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGIE----SMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCCS----CHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCCC----CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345555555567787 4 58899999999999999999998875
No 96
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.67 E-value=31 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHhC-CCchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAG-RNPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~-~d~~~A~eiL~~~~~~~ 53 (495)
.=+|+-+.+..|++.++ +|++.|.+.|.+-.+++
T Consensus 38 ~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 38 SMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp HHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred HcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 44599999999999996 79999999999876653
No 97
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=30.33 E-value=24 Score=30.46 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=26.9
Q ss_pred hccCCccCH-HHHHHHHHHhCCCchhhhhhhhccc
Q 011024 17 ALNGSVFTM-QEIALACRNAGRNPDLAGESLCDKQ 50 (495)
Q Consensus 17 ~l~gs~fSl-~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (495)
.|..=+|+= +.+..|...++||++.|.|+|.+..
T Consensus 72 qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 72 QLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 333334654 6889999999999999999998754
No 98
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=30.26 E-value=26 Score=30.44 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhhcccC
Q 011024 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (495)
.=+|+.++|..|...-++|+++|.|.|....+
T Consensus 85 eMGF~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 85 EMGFELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 33599999999999999999999999987654
No 99
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.91 E-value=50 Score=25.63 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHccccc
Q 011024 162 DFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSAE 203 (495)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~~ 203 (495)
+=|..| | .++..++..|-.||- |++.||+.||....-
T Consensus 14 ~~L~~M---G--F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 14 EPLLAM---G--FPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHT---S--CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHc---C--CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 345555 4 567999999999987 999999999987653
No 100
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=27.68 E-value=51 Score=28.71 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHHHcCCceEee
Q 011024 439 KVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE 472 (495)
Q Consensus 439 rVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~ 472 (495)
-||+|+|..- ..+.|++.++|++.||.....
T Consensus 71 vliiGtG~~~---~~l~p~~~~~l~~~GI~vE~m 101 (128)
T 2fi9_A 71 VLLIGTGVEL---LRLPEELRVLLWEKRISSDTM 101 (128)
T ss_dssp EEEEECTTSC---CCCCHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCC---CCCCHHHHHHHHHcCCEEEEe
Confidence 4999999983 346779999999999986654
No 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=27.18 E-value=79 Score=27.08 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcC-ccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 011024 154 DHLQKEMEDFLFKLLGE-GFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (495)
Q Consensus 154 ~~~~~d~E~FL~~MLG~-gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (495)
.+..+++.++|...+.. +..++.++++.+...|+.|+...+..|-.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34588999999988853 7789999999999999999988777654443
No 102
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.00 E-value=40 Score=26.19 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhhcccCCC
Q 011024 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (495)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (495)
.=+|+-+.+..|++..++ |++.|.+.|.+-.+++
T Consensus 18 ~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 18 AMGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp HTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred HcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 455999999999999987 9999999999877654
No 103
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=26.65 E-value=2.6e+02 Score=26.17 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 011024 337 LRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 386 (495)
Q Consensus 337 ~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~ 386 (495)
+.+...+......++.++-.+||..||-..|..+..+-|++.++.++..+
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~ 202 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677778889999999999999999999999999888777654
No 104
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=25.51 E-value=61 Score=26.99 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=45.9
Q ss_pred CeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCCceEee-CCCeEEEEEe
Q 011024 406 LLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE-GNAGTILIPL 482 (495)
Q Consensus 406 ~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~-~n~G~IlI~L 482 (495)
.+||+-|+.==+-+-.++..|..+. ....|.|++-.. ..+ .-|.+||++.|+.+... ...|.+.|.|
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~---~Ge~L~Vl~dd~------~a~-~dIp~~~~~~G~~v~~~e~~~~~~~i~I 95 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLK---KGEILEVVSDCP------QSI-NNIPLDARNHGYTVLDIQQDGPTIRYLI 95 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCC---SSCEEEEEEBCS------SSS-CHHHHHHHHHTCSEEEEEECSSSEEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCC---CCCEEEEEECCc------chH-HHHHHHHHHCCCEEEEEEeeCCEEEEEE
Confidence 4699999987777777777777653 336799997542 222 23779999999998652 2567555544
No 105
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=25.48 E-value=15 Score=39.35 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 154 DHLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 154 ~~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
.+..+++++||-.--. -+|. ++..-..|-.|+|||++||..|..+
T Consensus 140 ~l~d~~ldeYL~~Ars~~g~n--~EqAL~~L~~~~yDi~~AL~~L~~~ 185 (482)
T 2xag_B 140 NLSEAKLDEYIAIAKEKHGYN--MEQALGMLFWHKHNIEKSLADLPNF 185 (482)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhcCcc--HHHHHHHHHHccCCHHHHHHHHhcc
Confidence 4667889999853222 1344 4555578899999999999988754
No 106
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=25.39 E-value=1.3e+02 Score=21.03 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (495)
.+-+++|. ..-| .+..+-+..|..|++|++.|++...+
T Consensus 6 ~~~i~~F~-~iTg----~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFV-AVTG----AEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-HHTC----CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-HHhC----cCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34566775 4555 47999999999999999999988765
No 107
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=25.33 E-value=2.3e+02 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 011024 336 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREAD 385 (495)
Q Consensus 336 ~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean 385 (495)
++.....+......+|.++-.+||..+|-..|..+..+-+++..+..+..
T Consensus 122 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 122 GVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667778889999999999999999999999999999988877654
No 108
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.35 E-value=1.3e+02 Score=22.83 Aligned_cols=40 Identities=18% Similarity=0.476 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 011024 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (495)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (495)
.+.+++|. .+-| .+..+-+..|..+++|++.|++...+.-
T Consensus 16 ~e~i~qF~-~iTg----~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFT-TITG----ASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHH-HHTC----CCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHH-HHhC----CCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45577776 5555 3599999999999999999999987653
No 109
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.24 E-value=86 Score=29.20 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 154 DHLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 154 ~~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
.+..+++.++|...+. +|+.++.+.+..+...||.|+-.++..|=.+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3457899999998875 6789999999999999999999988877443
No 110
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=23.89 E-value=3.3e+02 Score=24.50 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 011024 336 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 386 (495)
Q Consensus 336 ~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~ 386 (495)
.+.....+......+|.++-.+||..+|-..|..+..+-+++.++..+...
T Consensus 117 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~ 167 (174)
T 3hho_A 117 ALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVER 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677788899999999999999999999999999999888877654
No 111
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=23.44 E-value=3.5e+02 Score=24.36 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 011024 336 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 386 (495)
Q Consensus 336 ~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~ 386 (495)
.+.....+......+|.++-.+||..+|...|..+..+-+++.++..+...
T Consensus 113 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~ 163 (171)
T 1fpo_A 113 RLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777888999999999999999999999999999888877754
No 112
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.25 E-value=93 Score=24.31 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred chhHHHHH--HHHHh---cCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 011024 156 LQKEMEDF--LFKLL---GEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (495)
Q Consensus 156 ~~~d~E~F--L~~ML---G~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (495)
..++.++| +|+++ |+| .|+..-++.+|..+|.. +.-++.++.....
T Consensus 4 s~~~~~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~-~~~~~~i~~~~D~ 54 (92)
T 1fi6_A 4 TDEQRQYYVNQFKTIQPDLNG-FIPGSAAKEFFTKSKLP-ILELSHIWELSDF 54 (92)
T ss_dssp CHHHHHHHHHHHTTTCCSTTC-EEEHHHHHHHHHHHSSC-HHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHcCCC-HHHHHHHHHHHCC
Confidence 45666666 57777 444 48899999999999976 4456677765543
No 113
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=22.60 E-value=59 Score=29.56 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHHHcCCceEee
Q 011024 439 KVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE 472 (495)
Q Consensus 439 rVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~ 472 (495)
-||+|+|..-. .+.|++.++|++.||.....
T Consensus 91 vliiGTG~~~~---~l~p~~~~~L~~~GIgvE~M 121 (150)
T 3cpk_A 91 VLLVGTGRRQH---LLGPEQVRPLLAMGVGVEAM 121 (150)
T ss_dssp EEEEECTTSCC---CCCHHHHHHHHTTTCEEEEE
T ss_pred EEEEcCCCCCC---CCCHHHHHHHHHcCCEEEEe
Confidence 48999998765 46779999999999976554
No 114
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=22.46 E-value=31 Score=27.04 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCcchHHHHHHHHHcCCceEe-eCCCeEEEEEe
Q 011024 405 DLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTE-EGNAGTILIPL 482 (495)
Q Consensus 405 ~~tIDLHGLhVkEAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~eegi~~~e-~~n~G~IlI~L 482 (495)
..+||+-|+.==.-+-.++..|..+. ....|.|++-.. . -..-|.+||++.|+.+.. ....|.+.|.|
T Consensus 6 ~~~lD~rGl~CP~Pvl~~k~al~~l~---~G~~L~V~~dd~------~-a~~di~~~~~~~G~~~~~~~~~~~~~~i~I 74 (78)
T 1pav_A 6 DRVIDARGSYCPGPLMELIKAYKQAK---VGEVISVYSTDA------G-TKKDAPAWIQKSGQELVGVFDRNGYYEIVM 74 (78)
T ss_dssp CCCCCBSSCSSCTTHHHHHHHHTTSC---TTCCEECCBSSS------C-HHHHHHHHHHHHTEEECCCCCCSSCBCCEE
T ss_pred cEEEECCCCCCCHHHHHHHHHHHcCC---CCCEEEEEECCc------c-HHHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 36799999987777777888887664 236688885322 1 234588999999988854 22456444433
No 115
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=22.01 E-value=77 Score=26.70 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 011024 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (495)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (495)
=+.|.+|..||-++ + ++.+|..||.|++.-.+.|-..
T Consensus 25 i~~eHlLlaLl~~~-----~-~~~iL~~~g~~~~~l~~~l~~~ 61 (143)
T 1k6k_A 25 MTVEHLLLALLSNP-----S-AREALEACSVDLVALRQELEAF 61 (143)
T ss_dssp ECHHHHHHHHTTCH-----H-HHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCc-----h-HHHHHHHcCCCHHHHHHHHHHH
Confidence 35799999999876 2 8999999999988766555443
No 116
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=21.35 E-value=4.7e+02 Score=23.82 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011024 332 DSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFET 395 (495)
Q Consensus 332 ~~Y~~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~If~~ 395 (495)
..-..++.+..+.+..-.+.+..|.+||..+|.+.|....+.=..-+.+-.+....+..-|...
T Consensus 7 ~~L~~l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~ 70 (235)
T 1sum_B 7 EKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLF 70 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788888899999999999999999999999888888777777777777766666554443
No 117
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.09 E-value=28 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 011024 175 SRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (495)
Q Consensus 175 ~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (495)
.+.+|+++|.+||+++.++-. +|.+|-.++.
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~-~LGIsr~tL~ 82 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAAR-LLGWGAATLT 82 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHH-HTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHHHH
Confidence 578999999999999998754 6777776653
No 118
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=20.74 E-value=75 Score=27.89 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=25.3
Q ss_pred EEEEecCCCCCCCCcchHHHHHHHHHcCCceEee
Q 011024 439 KVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE 472 (495)
Q Consensus 439 rVItG~G~HS~g~~k~kpAV~klL~eegi~~~e~ 472 (495)
-||+|+|..-. .+.|++.++|++.||.....
T Consensus 67 vliiGTG~~~~---~l~p~~~~~l~~~GI~vE~m 97 (132)
T 2gm2_A 67 VILLGTGERQQ---FPSTDVLAACLTRGIGLEAM 97 (132)
T ss_dssp EEEEECTTSCC---CCCHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCC---cCCHHHHHHHHHcCCEEEEe
Confidence 38999998765 46788999999999986654
No 119
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=20.68 E-value=4.5e+02 Score=23.42 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011024 332 DSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKI 392 (495)
Q Consensus 332 ~~Y~~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~I 392 (495)
.+-..++.+..+.+..-.+.+..|.+||..+|.+.|....+.=..-.++-.+........|
T Consensus 7 ~~L~~~~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l 67 (217)
T 1xwm_A 7 DDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALWLI 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888889999999999999999888777766655555555554444333
No 120
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=20.61 E-value=2.9e+02 Score=23.73 Aligned_cols=33 Identities=12% Similarity=-0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 011024 343 EYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKF 376 (495)
Q Consensus 343 ~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~ 376 (495)
.+.+..+.+|+.|... ..++.++|.+|....+.
T Consensus 18 ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~ 50 (120)
T 1x0t_A 18 IAIERIDTLFTLAERV-ARYSPDLAKRYVELALE 50 (120)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Confidence 3455677778877776 67888877777665544
No 121
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=20.33 E-value=4.7e+02 Score=23.42 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011024 333 SFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIF 393 (495)
Q Consensus 333 ~Y~~~R~~A~~h~~~Rne~f~kAa~AY~kGd~a~A~~LSeqGk~~~~kmrean~~AA~~If 393 (495)
+-..++.+..+.+..-.+.+..|.+||..+|.+.|....+.=..-.++-++........|.
T Consensus 12 ~l~~~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~ 72 (227)
T 1t72_A 12 ELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIA 72 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888889999999999999998887777666655555555555444433
Done!