Citrus Sinensis ID: 011025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALAPSSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Secondary Structure (PSIPRED)
ccEEcccccEEEcccccEEEEEEEEcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEccccccccccccccccEEccccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHccccccccEEEcccccccEEEEEEEEcccccccEEEcccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEcccccEEEEEEEEccccEEcccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEccccHccccccccccEEEccccccccHHHHHHHHHHHHHHcccccHHcccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccHHcccccccccEEEEccEEEEEEEEccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcHHHHHHHHccccHHccccccccccEEccEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEcccccEEEEEEEcccccccEEEEcHHHcccccccEEEEc
Coil and Loop (DISEMBL)
mlfcnisshlifkdTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAvsnntasntftsnLNILFNQKLHSEAGkslyynasegefpdsvyGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVrfsdhsssimdtsaplCMKIFQNTYNVTKSLAQSFNdviampslssfrnatkrtnisniirletfgqcipvlsvddcrDCLNNTIRWIqrcfdppgmgfgrilfpscimgfelyryskvpavgalapssapggkrgrAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILrggkqqaesqefplfpLRLALEatnhfsdenklgqggfgpvykgtladGKAIAVKRLsrtsgqglqEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEympnksldvHLFGLSLSLSIKCYLLYIL
Flexible Loop (DISEMBL)
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMpslssfrnaTKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALapssapggkRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHardqeekrnsqevqflhwegrIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Low Complexity Region (SEG)
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVsnntasntftsnlnILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALAPSSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRllgcclegqelllIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Disordered region (IsUnstruct)
*LFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALA********RGRAISIAIGTTLSALIVVLFGSFLWYRRR**************VQFLHWEGRIRNHYAYNILRGGKQQ***QEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI*
Disordered Region (DISOPRED)
MLF****SHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKV**********************AIGTTLSALIVVLFGSFLWYRRRR******************************************EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Disordered Region (DISEMBL)
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGAL*********RGRAISIAIGTTLSALIVVLFGSFLWYRRRR************EVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Disordered Region (DISPRO)
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGAL**********GRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIR*************QAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFCNISSHLIFKDTFDHHIQLTMELNRAFISEVKSYRRTMPTAANLASQAIRWLHLLSIVSSVMSQYFAEEDMVLSCAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALAPSSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q9M0X5	675	Cysteine-rich receptor-li	yes	no	0.698	0.512	0.38	2e-60
O65479	666	Putative cysteine-rich re	no	no	0.777	0.578	0.350	2e-55
Q8GWJ7	645	Cysteine-rich receptor-li	no	no	0.795	0.610	0.340	4e-54
Q8GYA4	669	Cysteine-rich receptor-li	no	no	0.735	0.544	0.344	2e-53
Q9C5S8	659	Cysteine-rich receptor-li	no	no	0.731	0.549	0.353	4e-51
Q8W4G6	627	Cysteine-rich receptor-li	no	no	0.723	0.570	0.326	5e-49
O65468	676	Cysteine-rich receptor-li	no	no	0.737	0.539	0.340	1e-48
O65483	636	Cysteine-rich receptor-li	no	no	0.717	0.558	0.337	6e-47
Q9LZU4	676	Cysteine-rich receptor-li	no	no	0.674	0.494	0.337	2e-45
Q9SYS3	654	Cysteine-rich receptor-li	no	no	0.743	0.562	0.314	4e-45

>sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/400 (38%), Positives = 208/400 (52%), Gaps = 54/400 (13%)

Query: 105 AGKSLYYNASEGEFPDS--VYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWY 162
           A  SL+ NA+ GE  DS  VYG++LC+ +VS + C++C+  A N  LQ+C   K A IWY
Sbjct: 63  AYASLFDNAAAGEENDSNRVYGVFLCRGDVSAEICRDCVAFAANETLQRCPREKVAVIWY 122

Query: 163 QVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFN--------DVIAMPSLS 214
              ECMVR+S+ S  I+            N  N+T++    FN        DV    +LS
Sbjct: 123 D--ECMVRYSNQS--IVGQMRIRPGVFLTNKQNITENQVSRFNESLPALLIDVAVKAALS 178

Query: 215 SFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFP 274
           S + AT++ N +    + +  QC P L+  DC  CL   I ++ RC D   +G GR++ P
Sbjct: 179 SRKFATEKANFTVFQTIYSLVQCTPDLTNQDCESCLRQVINYLPRCCDR-SVG-GRVIAP 236

Query: 275 SCIMGFELYRY---------------SKVPAVGALAPSSAPGGKRGRAISIAIGTTLSAL 319
           SC   +ELY +               S V A     PS    GK    I  AI   +S +
Sbjct: 237 SCSFRYELYPFYNETIAAAPMAPPPSSTVTAPPLNIPSEKGKGKNLTVIVTAIAVPVS-V 295

Query: 320 IVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFP 379
            V+L G+  W   RR        + S E + L  +G                   S E  
Sbjct: 296 CVLLLGAMCWLLARRR-----NNKLSAETEDLDEDG-----------------ITSTETL 333

Query: 380 LFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVN 439
            F       ATN FS+ NKLG GGFG VYKG L  G+ +A+KRLS+ S QG +EFKNEV+
Sbjct: 334 QFQFSAIEAATNKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVD 393

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           ++AKLQH+NL +LLG CL+G+E +L+YE++PNKSLD  LF
Sbjct: 394 VVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLF 433

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|O65479|CRK20_ARATH Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/425 (35%), Positives = 222/425 (52%), Gaps = 40/425 (9%)

Query: 77  SCAVSNNTASN-TFTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSF 134
           +C+++   +SN T+++NL  L +      A  S  + NA+ G+ PD V GL+LC+ NVS 
Sbjct: 32  NCSITTTYSSNSTYSTNLKTLLSSLSSRNASYSTGFQNATAGQAPDMVTGLFLCRGNVSP 91

Query: 135 QSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCMKIFQNT 193
           + C++CI  +VN  L +C   +EA  +Y+  +CM+R+S+ +  S ++T   + M   QN 
Sbjct: 92  EVCRSCIALSVNESLSRCPNEREAVFYYE--QCMLRYSNRNILSTLNTDGGVFM---QNA 146

Query: 194 YNVTKSLAQSFNDVIAMP--------SLSSFRNATKRTNISNIIRLETFGQCIPVLSVDD 245
            N        F D++  P        + S  R A  + +++ +  L    QC P L+  D
Sbjct: 147 RNPISVKQDRFRDLVLNPMNLAAIEAARSIKRFAVTKFDLNALQSLYGMVQCTPDLTEQD 206

Query: 246 CRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALAPSSAPGGKRG 305
           C DCL  +I   Q  +D  G   GR   PSC   ++ Y +     VG    SS   GK G
Sbjct: 207 CLDCLQQSIN--QVTYDKIG---GRTFLPSCTSRYDNYEFYNEFNVGTPQDSSPRPGKGG 261

Query: 306 RA-ISIAIGTTLSALIVVLFGSFLWYRRRRHARDQ------EEKRNSQEVQFLHWEGRIR 358
            + + +        ++ +LF +F   RR +  +        + KR   EV     E    
Sbjct: 262 NSSVIVIAVVVPITVLFLLFVAFFSVRRAKRKKTIGAIPLFKVKRKETEVT----EPPAE 317

Query: 359 NHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAI 418
                +I   G  Q        F  +  + AT+ F   NKLGQGGFG VYKGT   G  +
Sbjct: 318 TTDGDDITTAGSLQ--------FDFKAIVAATDIFLPINKLGQGGFGEVYKGTFPSGVQV 369

Query: 419 AVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           AVKRLS+ SGQG +EF+NEV ++AKLQH+NLV+LLG CLEG+E +L+YE++PNKSLD  L
Sbjct: 370 AVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFL 429

Query: 479 FGLSL 483
           F  ++
Sbjct: 430 FDPTM 434

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GWJ7|CRK19_ARATH Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 233/441 (52%), Gaps = 47/441 (10%)

Query: 59  SIVSSVMSQYFAEEDMVLSCAVSNNTASN-TFTSNLNILFNQKLHSEAGKSL--YYNASE 115
           SI +S  + ++    +  +C+V+   +SN T+++NL  L +      A      +  A+ 
Sbjct: 15  SITASAQNTFY----LYHNCSVTTTFSSNSTYSTNLKTLLSSLSSLNASSYSTGFQTATA 70

Query: 116 GEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHS 175
           G+ PD V GL+LC+ +VS + C++C+  AVN  L +C   KE   +Y+  +C++R+S+ +
Sbjct: 71  GQAPDRVTGLFLCRVDVSSEVCRSCVTFAVNETLTRCPKDKEGVFYYE--QCLLRYSNRN 128

Query: 176 -SSIMDTSAPLCMKIFQNTYNVTKSLAQSFNDVIAMP-------SLSSFRN-ATKRTNIS 226
             + ++T   + M+  +N  +V +     F D++  P       +  SF+  A ++ +++
Sbjct: 129 IVATLNTDGGMFMQSARNPLSVKQ---DQFRDLVLTPMNLAAVEAARSFKKWAVRKIDLN 185

Query: 227 NIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYS 286
               L    +C P L   DC DCL   I   Q  +D  G   GRIL PSC   ++ Y + 
Sbjct: 186 ASQSLYGMVRCTPDLREQDCLDCLKIGIN--QVTYDKIG---GRILLPSCASRYDNYAFY 240

Query: 287 KVPAVGALAPSSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQ 346
               VG    SS   GK G +  I I   +   ++ L    ++  R ++ R   EK    
Sbjct: 241 NESNVGTPQDSSPRPGKGGNSSVIIIAVVVPITVLFLLLVAVFSVRAKNKRTLNEKEPVA 300

Query: 347 EVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGP 406
           E      +G        +I   G  Q        F  +    ATN F   NKLGQGGFG 
Sbjct: 301 E------DGN-------DITTAGSLQ--------FDFKAIEAATNCFLPINKLGQGGFGE 339

Query: 407 VYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY 466
           VYKGTL+ G  +AVKRLS+TSGQG +EF+NEV ++AKLQH+NLV+LLG CLEG+E +L+Y
Sbjct: 340 VYKGTLSSGLQVAVKRLSKTSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVY 399

Query: 467 EYMPNKSLDVHLFGLSLSLSI 487
           E++PNKSLD  LF  ++ + +
Sbjct: 400 EFVPNKSLDHFLFDSTMKMKL 420

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8GYA4|CRK10_ARATH Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 213/424 (50%), Gaps = 60/424 (14%)

Query: 80  VSNNTASNTFTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSFQSCQ 138
            +N T+++T+ +NL  L        A  S  + NA+ G+ PD V GL+ C+ +VS + C+
Sbjct: 47  TANYTSNSTYNNNLKTLLASLSSRNASYSTGFQNATVGQAPDRVTGLFNCRGDVSTEVCR 106

Query: 139 NCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTK 198
            C+  AVN  L +C   KEA ++Y   EC++R+S+ +  I+ T       I  NT NVT 
Sbjct: 107 RCVSFAVNDTLTRCPNQKEATLYYD--ECVLRYSNQN--ILSTLITTGGVILVNTRNVTS 162

Query: 199 SLAQSFNDVIAMPSL---------SSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDC 249
           +     +D++ +P+L         SS +  T++ N + +       QC P L+  DC  C
Sbjct: 163 NQLDLLSDLV-LPTLNQAATVALNSSKKFGTRKNNFTALQSFYGLVQCTPDLTRQDCSRC 221

Query: 250 LNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGAL-------------AP 296
           L   I  I     P      RI+ PSC   +E+Y +    AV                 P
Sbjct: 222 LQLVINQI-----PTDRIGARIINPSCTSRYEIYAFYTESAVPPPPPPPSISTPPVSAPP 276

Query: 297 SSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGR 356
            S   G     +   +   + A+++ + G     RR R                      
Sbjct: 277 RSGKDGNSKVLVIAIVVPIIVAVLLFIAGYCFLTRRAR---------------------- 314

Query: 357 IRNHYAYNILRGGK-QQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADG 415
            +++Y  +   G     A+S +      R    AT+ F + NK+GQGGFG VYKGTL+DG
Sbjct: 315 -KSYYTPSAFAGDDITTADSLQLDY---RTIQTATDDFVESNKIGQGGFGEVYKGTLSDG 370

Query: 416 KAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLD 475
             +AVKRLS++SGQG  EFKNEV L+AKLQH+NLVRLLG CL+G+E +L+YEY+PNKSLD
Sbjct: 371 TEVAVKRLSKSSGQGEVEFKNEVVLVAKLQHRNLVRLLGFCLDGEERVLVYEYVPNKSLD 430

Query: 476 VHLF 479
             LF
Sbjct: 431 YFLF 434

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9C5S8|CRK5_ARATH Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1

 Score =  202 bits (515), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 215/427 (50%), Gaps = 65/427 (15%)

Query: 81  SNNTASNT-FTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSFQSCQ 138
           +N  + N+ + SNL  L      + A  SL  ++ ++G+  D V+GLYLCK ++S +SC+
Sbjct: 37  TNRISRNSIYFSNLQTLLTSLSSNNAYFSLGSHSLTKGQNSDMVFGLYLCKGDLSPESCR 96

Query: 139 NCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTK 198
            C++ A      +C G KE  I Y   ECM+ +SD +   MDT     +  + NT  VT 
Sbjct: 97  ECVIFAAKDTRSRCPGGKEFLIQYD--ECMLGYSDRNI-FMDTVTTTTIITW-NTQKVTA 152

Query: 199 SLAQSFNDVI---------AMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDC 249
             +  FND +            + +S + A K+++ S+   L    QCIP L+ +DC  C
Sbjct: 153 DQSDRFNDAVLSLMKKSAEEAANSTSKKFAVKKSDFSSSQSLYASVQCIPDLTSEDCVMC 212

Query: 250 LNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGAL--------------A 295
           L  +I+ +   F+  G   GR L PSC   +E+Y + K    G +               
Sbjct: 213 LQQSIKELY--FNKVG---GRFLVPSCNSRYEVYPFYKETIEGTVLPPPVSAPPLPLVST 267

Query: 296 PSSAPGGKRGRAISIAIGTTL---SALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLH 352
           PS  PG  +   + I         S LI V   SF   +R +   D  E+ +        
Sbjct: 268 PSFPPGKGKNSTVIIIAIVVPVAISVLICVAVFSFHASKRAKKTYDTPEEDD-------- 319

Query: 353 WEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTL 412
                       I   G  Q        F  ++   AT+ FS  NKLGQGGFG VYKGTL
Sbjct: 320 ------------ITTAGSLQ--------FDFKVIEAATDKFSMCNKLGQGGFGQVYKGTL 359

Query: 413 ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK 472
            +G  +AVKRLS+TSGQG +EFKNEV ++AKLQH+NLV+LLG CLE +E +L+YE++ NK
Sbjct: 360 PNGVQVAVKRLSKTSGQGEKEFKNEVVVVAKLQHRNLVKLLGFCLEREEKILVYEFVSNK 419

Query: 473 SLDVHLF 479
           SLD  LF
Sbjct: 420 SLDYFLF 426

Involved in multiple distinct defense responses. May function as a disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8W4G6|CRK15_ARATH Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2

 Score =  196 bits (497), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 204/414 (49%), Gaps = 56/414 (13%)

Query: 89  FTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNS 147
           + +NL  L +      A  S  + +A  G+ PD V GL+LC+ +VS   C+NC+  ++N 
Sbjct: 43  YLTNLRTLLSSLSAPNASYSTGFQSARAGQAPDRVTGLFLCRGDVSPAVCRNCVAFSIND 102

Query: 148 VLQKCSGTKEAFIWYQVQECMVRFSDHS--SSIMDTSAPLCMK----IFQNTYNVTKSLA 201
            L +C   +++  +Y   ECM+R+SD +  S++    A + M     I QN  N  K   
Sbjct: 103 TLVQCPSERKSVFYY--DECMLRYSDQNILSTLAYDGAWIRMNGNISIDQNQMNRFKDFV 160

Query: 202 QSFNDVIAMPSLSSFRN-ATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRC 260
            S  +  A+ + SS R   T +   + +  L    QC P L+  DC  CL ++I+ +   
Sbjct: 161 SSTMNQAAVKAASSPRKFYTVKATWTALQTLYGLVQCTPDLTRQDCFSCLESSIKLM--- 217

Query: 261 FDPPGMGFGRILFPSCIMGFELYRYSKVPAV--------------GALAPSSAPGGK-RG 305
             P     GR L+ SC   +EL+ +     V                +   S PG     
Sbjct: 218 --PLYKTGGRTLYSSCNSRYELFAFYNETTVRTQQAPPPLPPSSTPLVTSPSLPGKSWNS 275

Query: 306 RAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNI 365
             + +AI  T+    ++L   + + +R +++ D     +  ++                 
Sbjct: 276 NVLVVAIVLTILVAALLLIAGYCFAKRVKNSSDNAPAFDGDDI----------------- 318

Query: 366 LRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSR 425
                    + E      R+   ATN FS+ NK+GQGGFG VYKGT ++G  +AVKRLS+
Sbjct: 319 ---------TTESLQLDYRMIRAATNKFSENNKIGQGGFGEVYKGTFSNGTEVAVKRLSK 369

Query: 426 TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           +SGQG  EFKNEV ++AKLQH+NLVRLLG  + G E +L+YEYMPNKSLD  LF
Sbjct: 370 SSGQGDTEFKNEVVVVAKLQHRNLVRLLGFSIGGGERILVYEYMPNKSLDYFLF 423

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O65468|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 214/420 (50%), Gaps = 55/420 (13%)

Query: 84  TASNTFTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIV 142
           ++++T+++NL  L +      A  S  + N   G+ PD V GL+LC+ ++S + C NC+ 
Sbjct: 51  SSNSTYSTNLKTLLSSFASRNASYSTGFQNIRAGQTPDRVTGLFLCRGDLSPEVCSNCVA 110

Query: 143 AAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS--SIMDTSAPLCMK------IFQNTY 194
            +VN  L +C   +EA  +Y+  EC++R+S H +  S +     L M+        QN  
Sbjct: 111 FSVNESLTRCPNQREAVFYYE--ECILRYS-HKNFLSTVTYEGELIMRNPNNISSIQNQR 167

Query: 195 NVTKSLAQS-FNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNT 253
           +    L QS  N      + SS + +T +T ++++  L    QC P L+  DC  CL ++
Sbjct: 168 DQFIDLVQSNMNQAANEAANSSRKFSTIKTELTSLQTLYGLVQCTPDLARQDCFSCLTSS 227

Query: 254 IRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGA-----LAPSSAPG------- 301
           I  +   F    +G  R  +PSC   +ELY +    A+G      L P S P        
Sbjct: 228 INRMMPLFR---IG-ARQFWPSCNSRYELYAFYNETAIGTPSPPPLFPGSTPPLTSPSIP 283

Query: 302 GKRGRAISIAIGTTLSAL--IVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRN 359
           GK G +  + +   + A+   + L G     +R +   D     ++ EV           
Sbjct: 284 GKSGNSTVLVVAIVVLAVLLFIALVGYCFLAQRTKKTFDTA---SASEV----------- 329

Query: 360 HYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIA 419
                    G   A +    L   R    ATN F++ NK+G+GGFG VYKGT ++GK +A
Sbjct: 330 ---------GDDMATADSLQL-DYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVA 379

Query: 420 VKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           VKRLS+ S QG  EFK EV ++AKLQH+NLVRLLG  L+G+E +L+YEYMPNKSLD  LF
Sbjct: 380 VKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF 439

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O65483|CRK24_ARATH Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=3 SV=2

 Score =  189 bits (479), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 205/409 (50%), Gaps = 54/409 (13%)

Query: 84  TASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVA 143
           T ++T+  N  +L +    +      +Y    GE P+  YGL +C       SC +CI+ 
Sbjct: 31  TPNSTYDLNRRVLLSSLPLNVTAIDGFYTTWIGEHPNRAYGLGMCVPGTDAHSCSDCIIL 90

Query: 144 AVNSVLQKCSGTKEAFIW-YQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQ 202
           A   +LQ C+   EA +W      C+VR+S+ S       + L M+I ++  N T+    
Sbjct: 91  ANARLLQNCTNQTEAIVWRIDRTVCLVRYSNRS-----FYSSLGMEILRSD-NYTRDFQA 144

Query: 203 SFNDV--------IAMPSLSSF--RNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNN 252
           +  D+        I M   +S+    A  R   ++I R+  F QC   LS+ +C  CL  
Sbjct: 145 NLTDLEITWEALMIRMIDQASYLYYAAGIRKLETSISRIYGFVQCSRDLSLQNCTKCLQQ 204

Query: 253 TIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPAVGALAPSSAPGGKRGRAISIA- 311
            +   + C    G   G IL PSC + +ELY     P +G L  +  P  K G++IS   
Sbjct: 205 NVVEYRSCCR--GRQGGIILRPSCFIRWELY-----PFLG-LFDNIRPRQKDGKSISTGA 256

Query: 312 -IGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGK 370
            +   +  ++++  G  LW RR+ +      K  + ++             A +I   G 
Sbjct: 257 IVAIIVVPILLLALGVGLWKRRKAY------KTKTTKI-------------ADDITTSGS 297

Query: 371 QQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQG 430
            Q        F  +    AT +F + NKLG GGFG VYKGT  +G  +AVKRLS+TSGQG
Sbjct: 298 LQ--------FEFKAIEAATCNFHNVNKLGHGGFGEVYKGTFPNGTEVAVKRLSKTSGQG 349

Query: 431 LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
            +EFKNEV L+AKLQH+NLV+LLG  ++G E +L+YE++PNKSLD  LF
Sbjct: 350 EEEFKNEVFLVAKLQHRNLVKLLGYAVKGDEKILVYEFLPNKSLDHFLF 398

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LZU4|CRK4_ARATH Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/403 (33%), Positives = 198/403 (49%), Gaps = 69/403 (17%)

Query: 110 YYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMV 169
           +  A+ G+ PD V GL+LC+ +VS + C+NC+  +V   L  C   KE  ++Y   ECM+
Sbjct: 71  FQTATAGQAPDRVTGLFLCRGDVSQEVCRNCVAFSVKETLYWCPYNKEVVLYY--DECML 128

Query: 170 RFSDHSSSIMDTSAPLCMKIFQNTYNVTKS---LAQSFNDVIAMP-SLSSFR--NATKRT 223
           R+S    +I+ T       I  N  N++ S       F D+++   +L++    N++K+ 
Sbjct: 129 RYSHR--NILSTVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLNLAAVEAANSSKKF 186

Query: 224 NISNIIR---LETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGF----GRILFPSC 276
               +I    L    QC P L+  DC  CL  +I+         GM      GR  +PSC
Sbjct: 187 YTRKVITPQPLYLLVQCTPDLTRQDCLRCLQKSIK---------GMSLYRIGGRFFYPSC 237

Query: 277 IMGFELYRYSKVPAVGA-----------------LAPS---SAPGGKRGRAISIAIGTTL 316
              +E Y +    A  +                 LAP    S  G  R  ++ I +   +
Sbjct: 238 NSRYENYSFYNETATRSSSPPSLPPRSTPQQQLKLAPPPLISERGKGRNSSVIIVVVVPI 297

Query: 317 SALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQ 376
            AL+ +LF +F   R ++   + E +  ++E                +I   G  Q    
Sbjct: 298 IALL-LLFVAFFSLRAKKTRTNYEREPLTEESD--------------DITTAGSLQ---- 338

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN 436
               F  +    ATN F + NKLGQGGFG VYKG    G  +AVKRLS+TSGQG +EF N
Sbjct: 339 ----FDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFAN 394

Query: 437 EVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           EV ++AKLQH+NLVRLLG CLE  E +L+YE++PNKSLD  +F
Sbjct: 395 EVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIF 437

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9SYS3|CRK40_ARATH Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/432 (31%), Positives = 206/432 (47%), Gaps = 64/432 (14%)

Query: 81  SNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNC 140
           S N  S+TF  N   LF            +YNAS G+ PD VY L  C       +C NC
Sbjct: 34  SFNGNSSTFAQNRQKLFPTLADKVIINDGFYNASLGQDPDKVYALVSCARGYDQDACYNC 93

Query: 141 IVAAVNSVLQKCSGTKEAFIWYQVQE--CMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTK 198
           + +   + L  C   +++FIW    +  C+VR S+ S+       P  +    +T   +K
Sbjct: 94  VQSLTQNTLTDCRSRRDSFIWGGNDDVTCLVRSSNQSTFGSVQLKPPVVWPSPDTIESSK 153

Query: 199 SLA---QSFNDVIAMPSLSSFRNATKR--TNISNIIRLETFG-----------QCIPVLS 242
           ++    Q + +++      +   ATK   +++    + E  G           QC P LS
Sbjct: 154 NITLFKQQWEEMVN----RTLEAATKAEGSSVLKYYKAEKAGFTEFPDVYMLMQCTPDLS 209

Query: 243 VDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY-------SKVPAVG--- 292
             DC+ CL + + + ++  D  G   G    PSC   ++LY +       ++VPA     
Sbjct: 210 SRDCKQCLGDCVMYFRK--DYMGRKGGMASLPSCYFRWDLYSFHNAFDNVTRVPAPPPRP 267

Query: 293 -ALAPSSAPGGKRGRAIS----IAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQE 347
            A    S    K+G++I     IAI    + + +++F  F+    RR             
Sbjct: 268 HAQEKESCITVKKGKSIGYGGIIAIVVVFTFINLLVFIGFIKVYARR------------- 314

Query: 348 VQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPV 407
                  G++ N     +       ++ Q    F L + + AT+ FS EN LGQGGFG V
Sbjct: 315 -------GKLNN-----VGSAEYSDSDGQFMLRFDLGMIVMATDDFSSENTLGQGGFGTV 362

Query: 408 YKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE 467
           YKGT  +G+ +AVKRL++ SGQG  EFKNEV+L+ +LQHKNLV+LLG C EG E +L+YE
Sbjct: 363 YKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYE 422

Query: 468 YMPNKSLDVHLF 479
           ++PN SLD  +F
Sbjct: 423 FVPNSSLDHFIF 434

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
359477817	670	PREDICTED: cysteine-rich receptor-like p	0.816	0.602	0.461	1e-85
147776074	815	hypothetical protein VITISV_005300 [Viti	0.862	0.523	0.439	9e-85
255555021	686	ATP binding protein, putative [Ricinus c	0.757	0.546	0.379	1e-68
224076400	666	predicted protein [Populus trichocarpa]	0.747	0.555	0.406	5e-68
359474717	663	PREDICTED: cysteine-rich receptor-like p	0.737	0.550	0.387	1e-62
356575777	671	PREDICTED: cysteine-rich receptor-like p	0.757	0.558	0.390	6e-61
224100081	468	predicted protein [Populus trichocarpa]	0.703	0.743	0.394	1e-59
356575785	675	PREDICTED: cysteine-rich receptor-like p	0.759	0.557	0.391	1e-59
356575779	666	PREDICTED: cysteine-rich receptor-like p	0.757	0.563	0.389	5e-59
15234659	675	cysteine-rich receptor-like protein kina	0.698	0.512	0.38	1e-58

>gi|359477817|ref|XP_003632027.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Vitis vinifera]

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/420 (46%), Positives = 256/420 (60%), Gaps = 16/420 (3%)

Query: 78  CAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQSC 137
           C  +++  S  F SNL  L ++ L++E G S +    EGE PD VYGL+LC+ +VS   C
Sbjct: 35  CNNNSHAGSTKFQSNLGALLSRSLNNEGGISSFSMVYEGEDPDKVYGLFLCRPDVSKHIC 94

Query: 138 QNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCMKIFQNTYNV 196
           Q+CI AA   ++Q C   KEA IWY   EC +R+S+ S  S ++    L M   QN    
Sbjct: 95  QSCIDAATLKIVQVCQHKKEAIIWYN--ECFLRYSNRSFFSNLEMKPTLYMWNTQNASAP 152

Query: 197 TK---SLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNT 253
            K    L + F ++ A  + S    A  +  +SN + L    QC   L +  CR CL+  
Sbjct: 153 DKFDQKLGEMFQNLTAQATSSDDMYAIGQVEVSNFLNLYGIVQCTRDLRMSYCRRCLDEV 212

Query: 254 IRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKV--PAVGALAPSS-APGGKRGRAIS- 309
           + +I    +  G   GR+L PSC + +E+Y ++ V  P V A  PSS +P G++GR    
Sbjct: 213 VGYIPNFME--GKQGGRVLAPSCYIRYEVYPFAAVEDPVVEAQVPSSISPRGRKGRKTKW 270

Query: 310 IAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEG-RIR-NHYAYNILR 367
           IA GT+LS ++VV F  +   RRR+ A D EEK +  ++  L   G R+    Y+   L+
Sbjct: 271 IATGTSLSGIVVVAFCVYYVIRRRKGA-DPEEKESKGDLCLLDLGGGRLDAEDYSSETLQ 329

Query: 368 GGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS 427
           G    A+S+EFP+    +  EAT HFS++NKLG+GGFGPVYKGTL+DGK IAVKRLS TS
Sbjct: 330 G-DMLAKSKEFPVIGFDIVYEATQHFSNDNKLGEGGFGPVYKGTLSDGKEIAVKRLSSTS 388

Query: 428 GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSI 487
           GQGLQEFKNEV LIAKLQH+NLVRLLGCCLEG ELLLIYEYMPNKSLD  LF  +  L +
Sbjct: 389 GQGLQEFKNEVILIAKLQHRNLVRLLGCCLEGNELLLIYEYMPNKSLDFFLFDSTRGLEL 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776074|emb|CAN65425.1| hypothetical protein VITISV_005300 [Vitis vinifera]

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 198/451 (43%), Positives = 266/451 (58%), Gaps = 24/451 (5%)

Query: 55  LHLLSIVSSVMSQYFAEEDMVLSCAVSNNTA--------SNTFTSNLNILFNQKLHSEAG 106
           + L+ I    ++ +F   +  +   + N+T          N   SNL  L ++ L++E G
Sbjct: 149 IGLVDIAFGWLAYWFEGTEEAVGTKLLNSTTFPRLHAWIQNFKQSNLGALLSRSLNNEGG 208

Query: 107 KSLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQE 166
            S +    EGE PD VYGL+LC+ +VS   CQ+CI AA   ++Q C   KEA IWY   E
Sbjct: 209 ISSFSMVYEGEDPDKVYGLFLCRPDVSKHICQSCIDAATLKIVQVCQHKKEAIIWYN--E 266

Query: 167 CMVRFSDHSS-SIMDTSAPLCMKIFQNTYNVTK---SLAQSFNDVIAMPSLSSFRNATKR 222
           C +R+S+ S  S ++    L M   QN     K    L + F ++ A  + S    A  +
Sbjct: 267 CFLRYSNRSFFSNLEMKPTLYMWNRQNASAPDKFDQKLGEMFQNLTAKATSSDGMYAIGQ 326

Query: 223 TNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFEL 282
             +SN + L    QC   L +  CR CL+  + +I    +  G   GR+L PSC + +E+
Sbjct: 327 VEVSNFLNLYGIVQCTRDLRMSYCRQCLDEVVGYIPNFME--GKEGGRVLAPSCYIRYEI 384

Query: 283 YRYSKV--PAVGALAPSS-APGGKRGRAIS-IAIGTTLSALIVVLFGSFLWYRRRRHARD 338
           Y ++ V  P V A  PSS +P G++GR    IA GT+LS ++VV F  +   RRR+ A D
Sbjct: 385 YPFAAVEDPIVEAQVPSSISPRGRKGRKTKWIATGTSLSGIVVVAFCVYYVIRRRKGA-D 443

Query: 339 QEEKRNSQEVQFLHWEG-RIR-NHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDE 396
            EEK +  ++  L   G R+    Y+   L+G    A+S+EFP+    +  EAT HFS++
Sbjct: 444 PEEKESKGDLCLLDLGGGRLDAEDYSSETLQG-DMLAKSKEFPVIGFDIVYEATQHFSND 502

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           NKLG+GGFGPVYKGTL+DGK IAVKRLSRTSGQGLQEFKNEV LIAKLQH+NLVRLLGCC
Sbjct: 503 NKLGEGGFGPVYKGTLSDGKEIAVKRLSRTSGQGLQEFKNEVILIAKLQHRNLVRLLGCC 562

Query: 457 LEGQELLLIYEYMPNKSLDVHLFGLSLSLSI 487
           LEG ELLLIYEYMPNKSLD  LF  +  L +
Sbjct: 563 LEGNELLLIYEYMPNKSLDFFLFDSTRGLEL 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555021|ref|XP_002518548.1| ATP binding protein, putative [Ricinus communis] gi|223542393|gb|EEF43935.1| ATP binding protein, putative [Ricinus communis]

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/448 (37%), Positives = 241/448 (53%), Gaps = 73/448 (16%)

Query: 81  SNNTA---SNTFTSNLN-ILFNQKLHSEAGKSLYYNASEGEFPDSVYGLYLCKFNVSFQS 136
           SN+TA   ++T+ +NLN +L + + ++    + +Y+ SEGE  D VYGL+ C  ++S + 
Sbjct: 32  SNSTAFTRNSTYQNNLNRLLLSIRTNAINRPNGFYDTSEGEGEDRVYGLFFCTADLSTEV 91

Query: 137 CQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHS-SSIMDTSAPLCMKIFQNTYN 195
           CQ+C+++A   ++ +C   K A +WY   EC++R+S+ +  SI+  S  L M   QN  +
Sbjct: 92  CQDCVISATRDIVGRCPIEKTAIVWYD--ECILRYSNQTIYSILALSPGLYMWNAQNVSD 149

Query: 196 -------VTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRD 248
                  +  ++ ++ N   A   L + + AT   N +   +L T  QC P LS  D   
Sbjct: 150 QEGFSELLATTMIKTANQAAA--PLGAIKFATLVANFTASQKLYTLAQCTPDLSYSDSAQ 207

Query: 249 CLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYR-YSKVPAVGALAP----------- 296
           CL+  I  +  C D  G   GRIL+PSC + +E Y  Y++      ++P           
Sbjct: 208 CLHTAISNLPLCCD--GKRGGRILYPSCNIRYEFYPFYNETGFHREVSPFNNTTVVEGNP 265

Query: 297 -----------------------SSAPGGKRGRAISIAIGTTLSALIV--VLFGSFLWYR 331
                                      GG+  +     +  +++A IV  +LF SF +  
Sbjct: 266 HSPILPPPPPPPIHPPAPMEKLGKVEKGGEGSKPTRTKVIASVTAAIVGILLFSSFFYIT 325

Query: 332 RRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEATN 391
            RR                +  EGR R+ Y+   + G   + ++Q+FP+ P  +  EAT 
Sbjct: 326 WRRK---------------IQKEGRTRDEYSCENITG---EMDAQDFPMIPFDIIEEATE 367

Query: 392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           HFSD+ KLG+GGFGPVYKGTL DGK IAVKRLSRTSGQGL EF NEV LI KLQH+NLVR
Sbjct: 368 HFSDDAKLGEGGFGPVYKGTLPDGKEIAVKRLSRTSGQGLPEFMNEVTLIFKLQHRNLVR 427

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           LLGCCLE  E LLIYEYMPNKSLDV LF
Sbjct: 428 LLGCCLEKSEKLLIYEYMPNKSLDVFLF 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076400|ref|XP_002304937.1| predicted protein [Populus trichocarpa] gi|222847901|gb|EEE85448.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 171/421 (40%), Positives = 229/421 (54%), Gaps = 51/421 (12%)

Query: 89  FTSNLNILFNQKLHSEAGKSL-YYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNS 147
           +  NLN L +    +    S+ ++NAS G  PD VYGL+ C+ ++S   CQNC+  A   
Sbjct: 52  YKDNLNTLLSSLASNATSNSIGFFNASAGLEPDDVYGLFFCRGDLSTDVCQNCVANATKD 111

Query: 148 VLQK-CSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCMKIFQNTY-------NVTK 198
           ++Q+ C   K AFIWY   EC +R+S+    S M+      +   +N          +  
Sbjct: 112 IVQRRCPTQKVAFIWYD--ECFLRYSNKIMFSTMERDPNYTLWNPENVAVHADFNRELLN 169

Query: 199 SLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQ 258
           ++  + N    MP+ +    ATK  N +    L    QC P LS  DC  CL      ++
Sbjct: 170 TIFTAVNRAANMPAGAKKFRATK-ANYTTEHYLYVLVQCTPDLSSGDCEQCLLAAYSGLE 228

Query: 259 RCFDPPGMGFGRILFPSCIMGFELY-RYSKV-PAVGALAPSSAP-------GGKRG--RA 307
            C +    G  RILFPSCI+ FE Y  Y++      ALAPS  P        G +G  + 
Sbjct: 229 ICCNEKRGG--RILFPSCIVNFETYINYNETYVESAALAPSPVPQEKHFCYAGDKGSSKK 286

Query: 308 ISIAIGTTLSALI-VVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNIL 366
             I IG TLS ++ V+L  SF +   RR  RD      S E+ +                
Sbjct: 287 TWIIIGATLSTIVGVLLLSSFAYTMWRRKKRDD----CSNEIMY---------------- 326

Query: 367 RGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT 426
                + +SQ+  L  L + L+ATN +S+ENKLGQGGFGPVYKG + DGK IAVKRLSRT
Sbjct: 327 ----GEVKSQDSFLIQLDIVLKATNQYSNENKLGQGGFGPVYKGVMEDGKEIAVKRLSRT 382

Query: 427 SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLS 486
           SGQGL+EF NEVNLIA+LQH+NLV+LLGCCLE  E LL+YEYMPNKSLDV LF  ++ + 
Sbjct: 383 SGQGLREFMNEVNLIARLQHRNLVKLLGCCLEKNEKLLVYEYMPNKSLDVFLFDSAMRVQ 442

Query: 487 I 487
           +
Sbjct: 443 L 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474717|ref|XP_002267916.2| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Vitis vinifera]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/418 (38%), Positives = 227/418 (54%), Gaps = 53/418 (12%)

Query: 86  SNTFTSNLNILFNQKLHSEAGKSLYYNASEGEFP-DSVYGLYLCKFNVSFQSCQNCIVAA 144
           ++++ +NLN   +    +    + +YN + G  P D  YGL+LC+ +V+ Q CQ+C+  A
Sbjct: 38  NSSYETNLNFALSSLSSNATRDTGFYNVTAGRTPPDVAYGLFLCRGDVTSQVCQDCVATA 97

Query: 145 VN-SVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQS 203
           VN +V Q+C G K+A IWY   ECM+R+S+ S     + +P       NT N+T+     
Sbjct: 98  VNETVRQRCRGFKQAIIWYD--ECMLRYSNESFFSQVSESPRVS--MWNTQNITE--PDQ 151

Query: 204 FNDVIAMPSLSSFRN-----------ATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNN 252
           FN V+   +L S R            ATK  N +   R+ +  QC P LS D C  CL  
Sbjct: 152 FNQVLG-DTLDSIRTQAVNDQSGKKFATKEENFTGFQRVYSLVQCTPDLSPDQCDRCLIG 210

Query: 253 TIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSK--------VPAVGALAPSSAPGGKR 304
           TI  +  C    G    R+LFPSC + +ELY + +         PA  +   +   GG  
Sbjct: 211 TIAILPDCCG--GKQGARVLFPSCNVRYELYPFYQSVAAPPSPPPARPSEPSTEGKGGIS 268

Query: 305 GRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYN 364
            + I I +  T  +  VV+F    +   RR A+ + +   ++ V+F             N
Sbjct: 269 SKTIVIIVVPTFVS--VVIFSILCYCFIRRCAKKRYDTLEAENVEF-------------N 313

Query: 365 ILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLS 424
           I      Q        F L     ATN+FSD NK+G+GGFG VYKGTL+ G+ IA+KRLS
Sbjct: 314 ITTEQSLQ--------FDLATIQAATNNFSDHNKIGEGGFGAVYKGTLSSGQEIAIKRLS 365

Query: 425 RTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLS 482
           ++SGQG  EFKNEV L+AKLQH+NLVRLLG CLEG+E +L+YEY+PNKSLD  LFGL+
Sbjct: 366 KSSGQGAVEFKNEVVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDYFLFGLA 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575777|ref|XP_003556013.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Glycine max]

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 165/423 (39%), Positives = 232/423 (54%), Gaps = 48/423 (11%)

Query: 78  CAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNAS-EGEFP-DSVYGLYLCKFNVSFQ 135
           C  +  TA++TF  N+  LF+    +    +++YN++  G  P D+VYGL++C+ +V FQ
Sbjct: 37  CPSNGTTANSTFQINIRTLFSSLSSNATANNVFYNSTVAGANPSDTVYGLFMCRGDVPFQ 96

Query: 136 SCQNCIVAA---VNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCM---K 188
            C  C++ A   ++S LQ CS +K+A IWY   ECMVR+S+ S  S +DT   + +    
Sbjct: 97  LCGQCVINATQKLSSDLQ-CSLSKQAVIWYD--ECMVRYSNRSFFSTVDTRPAIGLLNSA 153

Query: 189 IFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRD 248
              N  N  + +  + N+     ++ + + ATK+ NIS    L    QC P LS   CR 
Sbjct: 154 NISNQANFMRLMFDTMNETADEAAIGAKKYATKQANISGFQTLYCLVQCTPDLSTQGCRS 213

Query: 249 CLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY--SKVPAVGALAPSSAPGGKRGR 306
           CL++ I  +  C +  G   GRIL PSC + ++LY +  + V A  A  P +      G 
Sbjct: 214 CLSDAIGLLPWCCE--GKQGGRILNPSCNVRYDLYPFYRTNVSAPPASVPPTDSSNSGGN 271

Query: 307 AIS-----IAIGTTLSALI-----VVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGR 356
            IS     I+ GT ++ ++     V+LF   +W   +R A+    KRNS   Q    E  
Sbjct: 272 IISYGGSEISPGTIVAIVVPITVAVLLFIVGIWLLSKRAAK----KRNS--AQDPKTETE 325

Query: 357 IRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGK 416
           I    A   LR             F       AT+ FSD NKLG+GGFG VYKG L  G+
Sbjct: 326 IS---AVESLR-------------FDFSTIEAATDKFSDANKLGEGGFGEVYKGLLPSGQ 369

Query: 417 AIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDV 476
            +AVKRLS+ SGQG  EFKNEV ++AKLQHKNLVRLLG CLEG+E +L+YE++ NKSLD 
Sbjct: 370 EVAVKRLSKNSGQGGTEFKNEVEVVAKLQHKNLVRLLGFCLEGEEKILVYEFVANKSLDY 429

Query: 477 HLF 479
            LF
Sbjct: 430 ILF 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100081|ref|XP_002334411.1| predicted protein [Populus trichocarpa] gi|222872074|gb|EEF09205.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/423 (39%), Positives = 214/423 (50%), Gaps = 75/423 (17%)

Query: 70  AEEDMVLSCAVSNNTA---SNTFTSNLNILFNQKLHSEAGKSL------YYNASEGEFPD 120
           A+E + L    SN T    ++ + +NLNIL    L S AG +       +YNAS G    
Sbjct: 19  AQEIIFLHHICSNTTTFVRNSPYQANLNIL----LSSLAGNATRNDINGFYNASTGHDLY 74

Query: 121 SVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSDHSSSIMD 180
            VYGL+LC+ +VS + CQ C+  A N V+Q+C   KEA IWY   +C +R+S+  S+I  
Sbjct: 75  EVYGLFLCRGDVSVEVCQECVNRATNDVVQRCPILKEAIIWY--DQCFLRYSN--SNIFS 130

Query: 181 TSAPLCMKIFQNTYNVT----------KSLAQSFNDVIAMPSLSSFRNATKRTNISNIIR 230
           + +     +  NT N+T           S++ +  +  + PS    + A K    +    
Sbjct: 131 SLSQTPWYVKWNTQNITDNVKFNMRVVDSISDAAKEAASAPS-GERKFAAKTVTYTWEES 189

Query: 231 LETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSKVPA 290
           L    QC P LS  DC  CLN TI +I   +     G GR+LFPSC   FE+Y +    A
Sbjct: 190 LYVLVQCTPDLSKYDCNRCLNLTISYIS-VWSKNAQG-GRVLFPSCNSRFEIYSFYNETA 247

Query: 291 VGALAPSSAPGGKRGRAISIAIGTTLSALIVVLFGSFLWYRRRRHARDQEEKRNSQEVQF 350
                                         VV               DQ           
Sbjct: 248 ------------------------------VVPLPPPPLSPPPLSPPDQ----------L 267

Query: 351 LHWEGR--IRNHYAYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVY 408
           L W GR  + + Y    ++G   +  SQ+ PL  L +  EAT  FSDENKLGQGGFGPVY
Sbjct: 268 LDWAGRATVGDDYPDKDIQG---EVTSQDLPLIRLDVINEATKQFSDENKLGQGGFGPVY 324

Query: 409 KGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY 468
           +GTL DGK +AVKRLSRTSGQG +EF NEV LIAKLQH+NLVRLLGCCLE  E LLIYEY
Sbjct: 325 RGTLEDGKEVAVKRLSRTSGQGQREFLNEVVLIAKLQHRNLVRLLGCCLEKNEKLLIYEY 384

Query: 469 MPN 471
           MPN
Sbjct: 385 MPN 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575785|ref|XP_003556017.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 5 [Glycine max]

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/419 (39%), Positives = 231/419 (55%), Gaps = 43/419 (10%)

Query: 78  CAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNAS-EGEFP-DSVYGLYLCKFNVSFQ 135
           C  +  TA++TF  N+  LF+    +    +++YN++  G  P D+VYGL++C+ +V FQ
Sbjct: 37  CPSNGTTANSTFQINIRTLFSSLSSNATANNVFYNSTVAGANPSDTVYGLFMCRGDVPFQ 96

Query: 136 SCQNCIVAA---VNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCM---K 188
            C  C++ A   ++S LQ CS +K+A IWY   ECMVR+S+ S  S +DT   + +    
Sbjct: 97  LCGQCVINATQKLSSDLQ-CSLSKQAVIWYD--ECMVRYSNRSFFSTVDTRPAIGLLNSA 153

Query: 189 IFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRD 248
              N  N  + +  + N+     ++ + + ATK+ NIS    L    QC P LS   CR 
Sbjct: 154 NISNQANFMRLMFDTMNETADEAAIGAKKYATKQANISGFQTLYCLVQCTPDLSTQGCRS 213

Query: 249 CLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY--SKVPAVGALAPSSAPGGKRGR 306
           CL++ I  +  C +  G   GRIL PSC + ++LY +  + V A  A  P +      G 
Sbjct: 214 CLSDAIGLLPWCCE--GKQGGRILNPSCNVRYDLYPFYRTNVSAPPASVPPTDSSNSGGG 271

Query: 307 AISIAIGTTLSALI-----VVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHY 361
              I+ GT ++ ++     V+LF   +W   +R A+    KRNS   Q    E  I    
Sbjct: 272 GSEISPGTIVAIVVPITVAVLLFIVGIWLLSKRAAK----KRNS--AQDPKTETEIS--- 322

Query: 362 AYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVK 421
           A   LR             F       AT+ FSD NKLG+GGFG VYKG L  G+ +AVK
Sbjct: 323 AVESLR-------------FDFSTIEAATDKFSDANKLGEGGFGEVYKGLLPSGQEVAVK 369

Query: 422 RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           RLS+ SGQG  EFKNEV ++AKLQHKNLVRLLG CLEG+E +L+YE++ NKSLD  LFG
Sbjct: 370 RLSKNSGQGGTEFKNEVEVVAKLQHKNLVRLLGFCLEGEEKILVYEFVANKSLDYILFG 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575779|ref|XP_003556014.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 2 [Glycine max]

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 230/418 (55%), Gaps = 43/418 (10%)

Query: 78  CAVSNNTASNTFTSNLNILFNQKLHSEAGKSLYYNAS-EGEFP-DSVYGLYLCKFNVSFQ 135
           C  +  TA++TF  N+  LF+    +    +++YN++  G  P D+VYGL++C+ +V FQ
Sbjct: 37  CPSNGTTANSTFQINIRTLFSSLSSNATANNVFYNSTVAGANPSDTVYGLFMCRGDVPFQ 96

Query: 136 SCQNCIVAA---VNSVLQKCSGTKEAFIWYQVQECMVRFSDHSS-SIMDTSAPLCM---K 188
            C  C++ A   ++S LQ CS +K+A IWY   ECMVR+S+ S  S +DT   + +    
Sbjct: 97  LCGQCVINATQKLSSDLQ-CSLSKQAVIWYD--ECMVRYSNRSFFSTVDTRPAIGLLNSA 153

Query: 189 IFQNTYNVTKSLAQSFNDVIAMPSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRD 248
              N  N  + +  + N+     ++ + + ATK+ NIS    L    QC P LS   CR 
Sbjct: 154 NISNQANFMRLMFDTMNETADEAAIGAKKYATKQANISGFQTLYCLVQCTPDLSTQGCRS 213

Query: 249 CLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY--SKVPAVGALAPSSAPGGKRGR 306
           CL++ I  +  C +  G   GRIL PSC + ++LY +  + V A  A  P +      G 
Sbjct: 214 CLSDAIGLLPWCCE--GKQGGRILNPSCNVRYDLYPFYRTNVSAPPASVPPTDSSNSGGG 271

Query: 307 AISIAIGTTLSALI-----VVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHY 361
              I+ GT ++ ++     V+LF   +W   +R A+    KRNS   Q    E  I    
Sbjct: 272 GSEISPGTIVAIVVPITVAVLLFIVGIWLLSKRAAK----KRNS--AQDPKTETEIS--- 322

Query: 362 AYNILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVK 421
           A   LR             F       AT+ FSD NKLG+GGFG VYKG L  G+ +AVK
Sbjct: 323 AVESLR-------------FDFSTIEAATDKFSDANKLGEGGFGEVYKGLLPSGQEVAVK 369

Query: 422 RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           RLS+ SGQG  EFKNEV ++AKLQHKNLVRLLG CLEG+E +L+YE++ NKSLD  LF
Sbjct: 370 RLSKNSGQGGTEFKNEVEVVAKLQHKNLVRLLGFCLEGEEKILVYEFVANKSLDYILF 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234659|ref|NP_192429.1| cysteine-rich receptor-like protein kinase 25 [Arabidopsis thaliana] gi|75335771|sp|Q9M0X5.1|CRK25_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 25; Short=Cysteine-rich RLK25; Flags: Precursor gi|7267280|emb|CAB81062.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|332657090|gb|AEE82490.1| cysteine-rich receptor-like protein kinase 25 [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/400 (38%), Positives = 208/400 (52%), Gaps = 54/400 (13%)

Query: 105 AGKSLYYNASEGEFPDS--VYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWY 162
           A  SL+ NA+ GE  DS  VYG++LC+ +VS + C++C+  A N  LQ+C   K A IWY
Sbjct: 63  AYASLFDNAAAGEENDSNRVYGVFLCRGDVSAEICRDCVAFAANETLQRCPREKVAVIWY 122

Query: 163 QVQECMVRFSDHSSSIMDTSAPLCMKIFQNTYNVTKSLAQSFN--------DVIAMPSLS 214
              ECMVR+S+ S  I+            N  N+T++    FN        DV    +LS
Sbjct: 123 D--ECMVRYSNQS--IVGQMRIRPGVFLTNKQNITENQVSRFNESLPALLIDVAVKAALS 178

Query: 215 SFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFP 274
           S + AT++ N +    + +  QC P L+  DC  CL   I ++ RC D   +G GR++ P
Sbjct: 179 SRKFATEKANFTVFQTIYSLVQCTPDLTNQDCESCLRQVINYLPRCCDR-SVG-GRVIAP 236

Query: 275 SCIMGFELYRY---------------SKVPAVGALAPSSAPGGKRGRAISIAIGTTLSAL 319
           SC   +ELY +               S V A     PS    GK    I  AI   +S +
Sbjct: 237 SCSFRYELYPFYNETIAAAPMAPPPSSTVTAPPLNIPSEKGKGKNLTVIVTAIAVPVS-V 295

Query: 320 IVVLFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFP 379
            V+L G+  W   RR        + S E + L  +G                   S E  
Sbjct: 296 CVLLLGAMCWLLARRR-----NNKLSAETEDLDEDG-----------------ITSTETL 333

Query: 380 LFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVN 439
            F       ATN FS+ NKLG GGFG VYKG L  G+ +A+KRLS+ S QG +EFKNEV+
Sbjct: 334 QFQFSAIEAATNKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVD 393

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           ++AKLQH+NL +LLG CL+G+E +L+YE++PNKSLD  LF
Sbjct: 394 VVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLF 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2115728	675	CRK25 "cysteine-rich RLK (RECE	0.692	0.508	0.362	3.6e-50
TAIR|locus:2121676	669	CRK10 "cysteine-rich RLK (RECE	0.183	0.136	0.615	1.5e-43
TAIR|locus:2121686	645	CRK19 "cysteine-rich RLK (RECE	0.206	0.158	0.543	6.7e-43
TAIR|locus:2121651	676	CRK8 "cysteine-rich RLK (RECEP	0.684	0.501	0.333	5.3e-41
TAIR|locus:2121636	659	CRK7 "cysteine-rich RLK (RECEP	0.183	0.138	0.571	7.4e-38
TAIR|locus:2077147	676	CRK4 "cysteine-rich RLK (RECEP	0.189	0.139	0.568	4.8e-37
TAIR|locus:2121626	830	CRK23 "cysteine-rich RLK (RECE	0.208	0.124	0.524	5.6e-36
TAIR|locus:2123056	656	CRK32 "cysteine-rich RLK (RECE	0.193	0.146	0.577	7.3e-36
TAIR|locus:2121691	667	CRK11 "cysteine-rich RLK (RECE	0.183	0.136	0.571	3.7e-34
TAIR|locus:2125766	654	CRK40 "cysteine-rich RLK (RECE	0.226	0.171	0.491	1.4e-33

TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 144/397 (36%), Positives = 208/397 (52%)

Query:   108 SLYYNASEGEFPDS--VYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQ 165
             SL+ NA+ GE  DS  VYG++LC+ +VS + C++C+  A N  LQ+C   K A IWY   
Sbjct:    66 SLFDNAAAGEENDSNRVYGVFLCRGDVSAEICRDCVAFAANETLQRCPREKVAVIWYD-- 123

Query:   166 ECMVRFSDHSSSIMDTSAPLCMKIF-QNTYNVTKSLAQSFN--------DVIAMPSLSSF 216
             ECMVR+S+ S        P    +F  N  N+T++    FN        DV    +LSS 
Sbjct:   124 ECMVRYSNQSIVGQMRIRP---GVFLTNKQNITENQVSRFNESLPALLIDVAVKAALSSR 180

Query:   217 RNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSC 276
             + AT++ N +    + +  QC P L+  DC  CL   I ++ RC D   +G GR++ PSC
Sbjct:   181 KFATEKANFTVFQTIYSLVQCTPDLTNQDCESCLRQVINYLPRCCDR-SVG-GRVIAPSC 238

Query:   277 IMGFELYR-YSKVPAVGALAP--SS---APG----GKRGRAISIAIGTTLSAL----IVV 322
                +ELY  Y++  A   +AP  SS   AP      ++G+  ++ +  T  A+     V+
Sbjct:   239 SFRYELYPFYNETIAAAPMAPPPSSTVTAPPLNIPSEKGKGKNLTVIVTAIAVPVSVCVL 298

Query:   323 LFGSFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFP 382
             L G+  W   RR        + S E + L  +G I +              E+ +F    
Sbjct:   299 LLGAMCWLLARRR-----NNKLSAETEDLDEDG-ITS-------------TETLQFQFSA 339

Query:   383 LRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIA 442
             +  A   TN FS+ NKLG GGFG VYKG L  G+ +A+KRLS+ S QG +EFKNEV+++A
Sbjct:   340 IEAA---TNKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVDVVA 396

Query:   443 KLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             KLQH+NL +             +YE++PNKSLD  LF
Sbjct:   397 KLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLF 433

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 56/91 (61%), Positives = 67/91 (73%)

Query:   389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             AT+ F + NK+GQGGFG VYKGTL+DG  +AVKRLS++SGQG  EFKNEV L+AKLQH+N
Sbjct:   344 ATDDFVESNKIGQGGFGEVYKGTLSDGTEVAVKRLSKSSGQGEVEFKNEVVLVAKLQHRN 403

Query:   449 LVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             LVR             +YEY+PNKSLD  LF
Sbjct:   404 LVRLLGFCLDGEERVLVYEYVPNKSLDYFLF 434

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:2121686 CRK19 "cysteine-rich RLK (RECEPTOR-like protein kinase) 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 56/103 (54%), Positives = 73/103 (70%)

Query:   386 ALEA-TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL 444
             A+EA TN F   NKLGQGGFG VYKGTL+ G  +AVKRLS+TSGQG +EF+NEV ++AKL
Sbjct:   318 AIEAATNCFLPINKLGQGGFGEVYKGTLSSGLQVAVKRLSKTSGQGEKEFENEVVVVAKL 377

Query:   445 QHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLFGLSLSLSI 487
             QH+NLV+             +YE++PNKSLD  LF  ++ + +
Sbjct:   378 QHRNLVKLLGYCLEGEEKILVYEFVPNKSLDHFLFDSTMKMKL 420

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2121651 CRK8 "cysteine-rich RLK (RECEPTOR-like protein kinase) 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 5.3e-41, P = 5.3e-41
 Identities = 131/393 (33%), Positives = 191/393 (48%)

Query:   110 YYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQECMV 169
             + N   G+ PD V GL+LC+ ++S + C NC+  +VN  L +C   +EA  +Y+  EC++
Sbjct:    78 FQNIRAGQTPDRVTGLFLCRGDLSPEVCSNCVAFSVNESLTRCPNQREAVFYYE--ECIL 135

Query:   170 RFSDHSS--SIMDTSAPLCMK------IFQNTYNVTKSLAQSFNDVIAMPSLSSFRN-AT 220
             R+S H +  S +     L M+        QN  +    L QS  +  A  + +S R  +T
Sbjct:   136 RYS-HKNFLSTVTYEGELIMRNPNNISSIQNQRDQFIDLVQSNMNQAANEAANSSRKFST 194

Query:   221 KRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGF 280
              +T ++++  L    QC P L+  DC  CL ++I  +   F    +G  R  +PSC   +
Sbjct:   195 IKTELTSLQTLYGLVQCTPDLARQDCFSCLTSSINRMMPLFR---IG-ARQFWPSCNSRY 250

Query:   281 ELYRYSKVPAVGA-----LAPSSAPG-------GKRGRAISIAIGTTLSA--LIVVLFGS 326
             ELY +    A+G      L P S P        GK G +  + +   + A  L + L G 
Sbjct:   251 ELYAFYNETAIGTPSPPPLFPGSTPPLTSPSIPGKSGNSTVLVVAIVVLAVLLFIALVGY 310

Query:   327 FLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLA 386
                 +R +   D     ++ EV                    G   A +    L   R  
Sbjct:   311 CFLAQRTKKTFDTA---SASEV--------------------GDDMATADSLQL-DYRTI 346

Query:   387 LEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH 446
               ATN F++ NK+G+GGFG VYKGT ++GK +AVKRLS+ S QG  EFK EV ++AKLQH
Sbjct:   347 QTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQH 406

Query:   447 KNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             +NLVR             +YEYMPNKSLD  LF
Sbjct:   407 RNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF 439

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2121636 CRK7 "cysteine-rich RLK (RECEPTOR-like protein kinase) 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 7.4e-38, Sum P(2) = 7.4e-38
 Identities = 52/91 (57%), Positives = 64/91 (70%)

Query:   389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             ATN FS+ NK+G+GGFG VYKGT ++G  +AVKRLS+TS QG  EFKNEV ++A L+HKN
Sbjct:   332 ATNDFSENNKIGRGGFGDVYKGTFSNGTEVAVKRLSKTSEQGDTEFKNEVVVVANLRHKN 391

Query:   449 LVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             LVR             +YEY+ NKSLD  LF
Sbjct:   392 LVRILGFSIEREERILVYEYVENKSLDNFLF 422

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2077147 CRK4 "cysteine-rich RLK (RECEPTOR-like protein kinase) 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.8e-37, Sum P(2) = 4.8e-37
 Identities = 54/95 (56%), Positives = 66/95 (69%)

Query:   386 ALEA-TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL 444
             A+EA TN F + NKLGQGGFG VYKG    G  +AVKRLS+TSGQG +EF NEV ++AKL
Sbjct:   343 AIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFANEVIVVAKL 402

Query:   445 QHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             QH+NLVR             +YE++PNKSLD  +F
Sbjct:   403 QHRNLVRLLGFCLERDERILVYEFVPNKSLDYFIF 437

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006952 "defense response" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0012501 "programmed cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IEP

TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 5.6e-36, Sum P(2) = 5.6e-36
 Identities = 54/103 (52%), Positives = 69/103 (66%)

Query:   381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNL 440
             F  +  + ATN+F   NKLGQGGFG VYKGT   G  +AVKRLS+TSGQG +EF+NEV +
Sbjct:   496 FDFKAIVAATNNFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKTSGQGEREFENEVVV 555

Query:   441 IAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLFGLSL 483
             +AKLQH+NLVR             +YE++ NKSLD  LF  ++
Sbjct:   556 VAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSLDYFLFDTTM 598

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2123056 CRK32 "cysteine-rich RLK (RECEPTOR-like protein kinase) 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.3e-36, Sum P(2) = 7.3e-36
 Identities = 56/97 (57%), Positives = 67/97 (69%)

Query:   385 LALEA-TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK 443
             + LEA T+ FS  NKLG+GGFG VYKG L +   +AVKRLS  SGQG QEFKNEV ++AK
Sbjct:   312 MTLEAATDKFSRNNKLGKGGFGEVYKGMLPNETEVAVKRLSSNSGQGTQEFKNEVVIVAK 371

Query:   444 LQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLFG 480
             LQHKNLVR             +YE++PNKSL+  LFG
Sbjct:   372 LQHKNLVRLLGFCLERDEQILVYEFVPNKSLNYFLFG 408

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2121691 CRK11 "cysteine-rich RLK (RECEPTOR-like protein kinase) 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
 Identities = 52/91 (57%), Positives = 63/91 (69%)

Query:   389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             ATN FS  NKLG+GGFG VYKG L++G  +AVKRLS+ SGQG +EF+NE  L+ KLQH+N
Sbjct:   346 ATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRLSKKSGQGTREFRNEAVLVTKLQHRN 405

Query:   449 LVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
             LVR             IYE++ NKSLD  LF
Sbjct:   406 LVRLLGFCLEREEQILIYEFVHNKSLDYFLF 436

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP;RCA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0016020 "membrane" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2125766 CRK40 "cysteine-rich RLK (RECEPTOR-like protein kinase) 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 56/114 (49%), Positives = 76/114 (66%)

Query:   368 GGKQQAESQ-EFPL-FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSR 425
             G  + ++S  +F L F L + + AT+ FS EN LGQGGFG VYKGT  +G+ +AVKRL++
Sbjct:   321 GSAEYSDSDGQFMLRFDLGMIVMATDDFSSENTLGQGGFGTVYKGTFPNGQEVAVKRLTK 380

Query:   426 TSGQGLQEFKNEVNLIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLF 479
              SGQG  EFKNEV+L+ +LQHKNLV+             +YE++PN SLD  +F
Sbjct:   381 GSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIF 434

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020409001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (654 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-19
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-19
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-19
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-18
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	1e-17
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-16
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-14
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-14
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-14
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-14
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-13
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-13
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	1e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-12
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-12
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-11
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-11
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	9e-11
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-10
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-10
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	5e-10
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	5e-10
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-09
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	2e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-09
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-09
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	6e-09
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	6e-09
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	7e-09
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	9e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-08
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-08
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-08
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-08
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-08
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-08
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	6e-08
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	6e-08
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	8e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	9e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-07
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	1e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-07
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-07
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	4e-07
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	5e-07
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	6e-07
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	8e-07
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	8e-07
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	9e-07
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	9e-07
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-06
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	3e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-06
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	6e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	6e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-06
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	6e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	6e-06
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	8e-06
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	9e-06
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	9e-06
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	9e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	1e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	2e-05
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-05
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-05
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	3e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	3e-05
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-05
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	4e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	4e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	6e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	6e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	6e-05
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	6e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	7e-05
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	7e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	7e-05
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	8e-05
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	9e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	1e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	1e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	1e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	1e-04
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	1e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-04
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	1e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	1e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	2e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-04
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	3e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	3e-04
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	3e-04
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	4e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-04
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	5e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	6e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	6e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	6e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	6e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	8e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.001
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	0.001
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.001
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.001
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	0.002
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	0.002
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.002
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	0.002
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	0.003
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.003
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.004
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	0.004
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	0.004
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	0.004

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 87.9 bits (219), Expect = 1e-19
 Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 398 KLGQGGFGPVYKGTLADGKA-----IAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLVR 451
           KLG+G FG VYKGTL          +AVK L    S +  +EF  E +++ KL H N+VR
Sbjct: 6   KLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVR 65

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
           LLG C +G+ L ++ EYMP   L   L
Sbjct: 66  LLGVCTQGEPLYIVTEYMPGGDLLDFL 92

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 396 ENKLGQGGFGPVYKGTLADGK-----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
             KLG+G FG VYKG L          +AVK L    S Q ++EF  E  ++ KL H N+
Sbjct: 4   GKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNV 63

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           V+LLG C E + L ++ EYM    L  +L      LS+   L + L
Sbjct: 64  VKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFAL 109

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA-----IAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
             KLG+G FG VYKGTL          +AVK L    S Q ++EF  E  ++ KL H N+
Sbjct: 4   GKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNI 63

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           V+LLG C E + L+++ EYMP   L  +L
Sbjct: 64  VKLLGVCTEEEPLMIVMEYMPGGDLLDYL 92

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 397 NKLGQGGFGPVYKGTLADGK----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
            KLG+G FG VYKG L         +AVK L    S +  ++F  E  ++ KL H N+VR
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
           LLG C E + L L+ EYM    L  +L
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGDLLDYL 87

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 83  NTASNTFTSNLNILFNQKLHSEAGKS---LYYNASEGEFPDSVYGLYLCKFNVSFQSCQN 139
            TA++TF SNLN L +  L S A  S    +   + G  PD+VYGL  C+ ++S   C++
Sbjct: 13  TTANSTFESNLNALLSS-LSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDCRS 71

Query: 140 CIVAAVNSVLQKCSGTKEAFIWYQVQECMVRFSD 173
           C+  AV+ + + C   K   IWY    C +R+  
Sbjct: 72  CLATAVSELRRCCPNKKGGRIWY--DSCFLRYES 103

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           LG+GGFG VY       GK +A+K + +  S   L+E   E+ ++ KL H N+V+L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 457 LEGQELLLIYEYMPNKSLDVHLFGLSLSLS---IKCYLLYIL 495
            +   L L+ EY    SL   L      LS   I   LL IL
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQIL 102

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           KLG G FG VYK      GK +AVK L       +  Q  + E+ ++ +L H N+VRL+ 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 455 CCLEGQELLLIYEYMPNKSLDVHLF-GLSLSLS-IKCYLLYIL 495
              +   L L+ EY     L  +L  G  LS    K   L IL
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQIL 108

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLV 450
           +    KLG+G FG VY       GK +A+K + +   +  +E    E+ ++ KL+H N+V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           RL     +  +L L+ EY     L   L
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLL 88

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 392 HFSDENKLGQGGFGPVYKG-TLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKN 448
           ++   + +G+G FG VYKG  L  G  +A+K++S      + L+    E++L+  L+H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLD--VHLFG-LSLSLSIKCYLLYIL 495
           +V+ +G       L +I EY  N SL   +  FG    SL    Y+  +L
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVA-VYVYQVL 109

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 71.8 bits (177), Expect = 5e-14
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 397 NKLGQGGFGPVYKGTLAD-GKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
             LG+G FG VY     D G+ +AVK   LS  S + L+  + E+ +++ LQH N+VR  
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 454 GCCL--EGQELLLIYEYMPNKSL 474
           G     E   L +  EY+   SL
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSL 88

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 399 LGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE 458
           +G+G FG V  G    G+ +AVK L   S    Q F  E +++  L+H NLV+LLG  L+
Sbjct: 14  IGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQ 71

Query: 459 GQELLLIYEYMPNKSL 474
           G  L ++ EYM   SL
Sbjct: 72  GNPLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 399 LGQGGFGPVYKGTLADGKA------IAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVR 451
           LG+G FG V+ G     +       +AVK L  T+    ++ F+ E  L+   QH+N+V+
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
             G C EG   ++++EYM +  L+  L
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFL 99

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 19/115 (16%)

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKG---TLADGK---AIAVKRLSRT-SGQ 429
           E PL  +R        F +E  LG+G FG VYKG      +     ++A+K L      +
Sbjct: 1   EIPLSAVR--------FLEE--LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPK 50

Query: 430 GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLS 484
             QEF+ E  L++ LQH N+V LLG C + Q   +++EY+ +   D+H F +  S
Sbjct: 51  VQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHG--DLHEFLVRNS 103

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            F    K+G+GGFG VYK      GK +A+K +   S +  ++  NE+ ++ K +H N+V
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLD 475
           +  G  L+  EL ++ E+    SL 
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSLK 85

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 8/105 (7%)

Query: 397 NKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLV 450
            +LG+G FG V            G+ +AVK L+ +   Q   +F+ E+ ++  L H+N+V
Sbjct: 10  KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIV 69

Query: 451 RLLGCCLE--GQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY 493
           +  G C +  G+ L LI EY+P+ SL  +L      +++K  LL+
Sbjct: 70  KYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLF 114

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGL-QEFKNEVNLIAKLQHKNLVRLLGCC 456
           K+G+G FG VYKG L     +AVK    T    L ++F  E  ++ +  H N+V+L+G C
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 457 LEGQELLLIYEYMPNKSLDVHL 478
           ++ Q + ++ E +P  SL   L
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFL 83

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 377 EFPLFPLRLALEA---TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQ 432
           E     L+  +        + +  K+G+G  G VYK T  A GK +A+K++ R   Q  +
Sbjct: 2   EELKAALKDIVSEGDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKM-RLRKQNKE 60

Query: 433 EFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
              NE+ ++   +H N+V      L G EL ++ EYM   SL
Sbjct: 61  LIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSL 102

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query: 393 FSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           F+ E KLG G FG V++G   +   +A+K L        Q+F+ EV  + +L+HK+L+ L
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
              C  G+ + +I E M   SL   L
Sbjct: 68  FAVCSVGEPVYIITELMEKGSLLAFL 93

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 62.3 bits (151), Expect = 9e-11
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 398 KLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           +LG+G FG V+           D   +AVK L   S    Q+F+ E  L+  LQH+++VR
Sbjct: 12  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVR 71

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
             G C EG+ LL+++EYM +  L+  L
Sbjct: 72  FYGVCTEGRPLLMVFEYMRHGDLNRFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 399 LGQGGFGPVYKGT-LADGK----AIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG VYKG  + +G+     +A+K L   +  +  +E  +E  ++A + H ++VRL
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
           LG CL   ++ LI + MP   L  ++
Sbjct: 75  LGICL-SSQVQLITQLMPLGCLLDYV 99

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           E KLG G FG V+ GT      +AVK L +      + F  E  ++ KL+H  LV+L   
Sbjct: 11  ERKLGAGQFGEVWMGTWNGTTKVAVKTL-KPGTMSPEAFLQEAQIMKKLRHDKLVQLYAV 69

Query: 456 CLEGQELLLIYEYMPNKSL 474
           C E + + ++ EYM   SL
Sbjct: 70  CSEEEPIYIVTEYMSKGSL 88

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 399 LGQGGFGPVYKG-TLADGKAIAVKRLS-----RTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG VY+G  L DG   AVK +S     +T  + +++ + E+ L++KLQH N+V+ 
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 453 LGCCLEGQELLLIYEYMPNKSL 474
           LG   E   L +  E +P  SL
Sbjct: 68  LGTEREEDNLYIFLELVPGGSL 89

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 399 LGQGGFGPV----YKGTLAD-GKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRL 452
           LG+G FG V    Y       G+ +AVK L R  GQ     +K E+N++  L H+N+V+ 
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 453 LGCCLE--GQELLLIYEYMPNKSLDVHLFGLSLSLS 486
            GCC E  G+ L LI EY+P  SL  +L    L+L+
Sbjct: 72  KGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLA 107

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 399 LGQGGFGPVYKGT----LADGKA---IAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLV 450
           LG G FG VY+GT    L  G     +AVK L + +  Q  +EF  E +L++   H N+V
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIV 62

Query: 451 RLLGCCLEGQELLLIYEYMPNKSL 474
           +LLG CL  +   +I E M    L
Sbjct: 63  KLLGVCLLNEPQYIIMELMEGGDL 86

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           + +LG+G FG V+           D   +AVK L   S    ++F  E  L+  LQH+++
Sbjct: 10  KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHI 69

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           V+  G C+EG  L++++EYM +  L+  L
Sbjct: 70  VKFYGVCVEGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 396 ENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           ++KLG G +G VY+G        +AVK L +     ++EF  E  ++ +++H NLV+LLG
Sbjct: 11  KHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 69

Query: 455 CCLEGQELLLIYEYMPNKSL 474
            C       +I E+M   +L
Sbjct: 70  VCTREPPFYIITEFMTYGNL 89

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 399 LGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQ-EFKNEVNLIAKLQHKNLVRLLGCCL 457
           LG+G FG V+KGTL D   +AVK       Q L+ +F +E  ++ +  H N+V+L+G C 
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCT 62

Query: 458 EGQELLLIYEYMP 470
           + Q + ++ E +P
Sbjct: 63  QRQPIYIVMELVP 75

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 396 ENKLGQGGFGPVYKGTLA------DGKAIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKN 448
              +GQG FG V++              +AVK L    S     +F+ E  L+A+  H N
Sbjct: 10  VRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPN 69

Query: 449 LVRLLGCCLEGQELLLIYEYM 469
           +V+LLG C  G+ + L++EYM
Sbjct: 70  IVKLLGVCAVGKPMCLLFEYM 90

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           ++G G FG V+ G   + + +A+K + R      ++F  E  ++ KL H  LV+L G C 
Sbjct: 11  EIGSGQFGLVWLGYWLEKRKVAIKTI-REGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCT 69

Query: 458 EGQELLLIYEYMPNKSLDVHL 478
           E   + L++E+M +  L  +L
Sbjct: 70  ERSPICLVFEFMEHGCLSDYL 90

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLS------RTSGQGLQEFKNEVNLIAKLQHKNLV 450
             LG+G +G VY G    G+ IAVK++         + +  ++ + EV+L+  L+H N+V
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 451 RLLGCCLEGQELLLIYEYMPNKSL 474
           + LG CL+   + +  E++P  S+
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSI 89

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 392 HFSDEN-----KLGQGGFGPVY----KGTLADGK--AIAVKRLSRTSGQGLQ-EFKNEVN 439
            F   N      LG+G FG V+    KG   +G    + VK L +T  + LQ EF+ E++
Sbjct: 1   AFPRSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELD 60

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEY 468
           +  KL HKN+VRLLG C E +   +I EY
Sbjct: 61  MFRKLSHKNVVRLLGLCREAEPHYMILEY 89

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 399 LGQGGFGPVYKGTLAD-GKAIAVKR-----LSRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LGQG FG VY     D G+ +AVK+      S  + + +   + E+ L+  LQH+ +V+ 
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQY 69

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
            GC  + + L +  EYMP  S+   L
Sbjct: 70  YGCLRDDETLSIFMEYMPGGSVKDQL 95

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 395 DENK----LGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           DEN     LG+G +G VY    L+    IA+K +     + +Q    E+ L + L+H+N+
Sbjct: 8   DENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNI 67

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSL 474
           V+ LG   E     +  E +P  SL
Sbjct: 68  VQYLGSDSENGFFKIFMEQVPGGSL 92

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL-ADGK---AIAVKRLS--RTSGQGLQEFKNEVNLIAKL 444
           +H + +  +G G FG V++G L   G+   A+A+K L    T  Q  Q+F +E +++ + 
Sbjct: 5   SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ-RQDFLSEASIMGQF 63

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            H N++RL G   + +  ++I EYM N +LD +L
Sbjct: 64  SHHNIIRLEGVVTKFKPAMIITEYMENGALDKYL 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGT------LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           + +LG+G FG V+           D   +AVK L   +    ++F+ E  L+  LQH+++
Sbjct: 10  KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHI 69

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           V+  G C +G  L++++EYM +  L+  L
Sbjct: 70  VKFYGVCGDGDPLIMVFEYMKHGDLNKFL 98

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 399 LGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+  
Sbjct: 12  LGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYK 71

Query: 454 GCCLEG--QELLLIYEYMPNKSL 474
           G C     + L L+ EY+P  SL
Sbjct: 72  GVCYSAGRRNLRLVMEYLPYGSL 94

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 54.8 bits (133), Expect = 3e-08
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 21/116 (18%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKR---------LSRTSGQGLQEFKNEVNLIA 442
           +    KLG+G +G VYK      G+ +A+K+         +  T+   L+E    ++L+ 
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTA---LRE----ISLLK 53

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           +L+H N+V+LL      ++L L++EY      K LD     LS +L IK  +  +L
Sbjct: 54  ELKHPNIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNL-IKSIMYQLL 108

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           KLG G FG V+ G   +   +AVK L +     +Q F  E NL+  LQH  LVRL     
Sbjct: 13  KLGAGQFGEVWMGYYNNSTKVAVKTL-KPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVT 71

Query: 458 EGQELLLIYEYMPNKSL 474
           + + + +I EYM   SL
Sbjct: 72  KEEPIYIITEYMAKGSL 88

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 11/98 (11%)

Query: 389 ATNHFSDENKLGQGGFGPVYKGTL---ADG---KAIAVKRLS-RTSGQGLQEFKNEVNLI 441
           +T  F +E  LG+  FG VYKG L   A G   +A+A+K L  +  G   +EFK+E  + 
Sbjct: 5   STVRFMEE--LGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMR 62

Query: 442 AKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           ++LQH N+V LLG   + Q L +I+ Y  +   D+H F
Sbjct: 63  SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHS--DLHEF 98

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 397 NKLGQGGFGPVYKGT--LADGK--AIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLVR 451
            +LG G FG V KG   +  GK   +AVK L +     G +EF  E +++A+L H  +VR
Sbjct: 1   KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVR 60

Query: 452 LLGCCLEGQELLLIYEYMPNKSL 474
           L+G C  G+ L+L+ E  P   L
Sbjct: 61  LIGVCK-GEPLMLVMELAPLGPL 82

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 53.2 bits (128), Expect = 8e-08
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 397 NKLGQGGFGPVYKGTLA--DGKA----IAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
             LG G FG VY+G     DG A    +AVK L    S Q   +F  E  +++K  H+N+
Sbjct: 12  RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNI 71

Query: 450 VRLLGCCLEGQELLLIYEYM 469
           VRL+G   E     ++ E M
Sbjct: 72  VRLIGVSFERLPRFILLELM 91

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 396 ENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRTSGQGLQ-EFKNEVNLIAKLQHKNLV 450
           E  +G G FG V +G L         +A+K L   S    + +F  E +++ +  H N++
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           RL G   + + +++I EYM N SLD  L
Sbjct: 69  RLEGVVTKSRPVMIITEYMENGSLDKFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           F    KLG+G +G VYK      G+ +A+K +       LQE   E++++ +     +V+
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVK 62

Query: 452 LLGCCLEGQELLLIYEY 468
             G   +  +L ++ EY
Sbjct: 63  YYGSYFKNTDLWIVMEY 79

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 34/121 (28%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN-----------EVNLIAK 443
             KLG+G +  VYK      G+ +A+K++       L E K            E+ L+ +
Sbjct: 5   GKKLGEGTYAVVYKARDKETGRIVAIKKIK------LGERKEAKDGINFTALREIKLLQE 58

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMP--------NKSLDVHLFGLSLSLS-IKCYLLYI 494
           L+H N++ LL        + L++E+M         +KS+        L+ + IK Y+L  
Sbjct: 59  LKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIV-------LTPADIKSYMLMT 111

Query: 495 L 495
           L
Sbjct: 112 L 112

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 398 KLGQGGFGPVYKGTL--ADGKAI--AVKRLSRTSGQG-LQEFKNEVNLIAKLQHKNLVRL 452
           KLG G FG V +G    + GK I  AVK L        + +F  E  ++  L H+NL+RL
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL 61

Query: 453 LGCCLEGQELLLIYEYMPNKSL 474
            G  L    L+++ E  P  SL
Sbjct: 62  YGVVLT-HPLMMVTELAPLGSL 82

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             KLG G FG V+ G       +A+K L + S    + F  E NL+ +LQH  LVRL   
Sbjct: 11  VKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAV 69

Query: 456 CLEGQELLLIYEYMPNKSL 474
             + + + +I EYM N SL
Sbjct: 70  VTQ-EPIYIITEYMENGSL 87

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
            ++G+G FG VY     +DGK   +K   LS  S +  ++  NEV ++ KL H N+++  
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYY 65

Query: 454 GCCLEGQELLLIYEYMPNKSLDVHL 478
               E  +L ++ EY     L   +
Sbjct: 66  ESFEEKGKLCIVMEYADGGDLSQKI 90

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 7/82 (8%)

Query: 399 LGQGGFGPVYKGT-LADGKAI----AVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG VYKG  + +G+ +    A+K L+ T+G +   EF +E  ++A + H +LVRL
Sbjct: 15  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 74

Query: 453 LGCCLEGQELLLIYEYMPNKSL 474
           LG CL    + L+ + MP+  L
Sbjct: 75  LGVCLS-PTIQLVTQLMPHGCL 95

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 399 LGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE 458
           LG G FG V+ G       +A+K + R       +F  E  ++ KL H NLV+L G C +
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMI-REGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK 70

Query: 459 GQELLLIYEYMPNKSL 474
            + + ++ EYM N  L
Sbjct: 71  QRPIFIVTEYMANGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 399 LGQGGFGPVYKGT------LADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAKLQHKNLVR 451
           LG+G FG V K T       A    +AVK L   +    L++  +E NL+ ++ H ++++
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIK 67

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
           L G C +   LLLI EY    SL   L
Sbjct: 68  LYGACSQDGPLLLIVEYAKYGSLRSFL 94

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           KLG G FG V++G   +   +AVK L   +    ++F  E  ++ KL+H  L++L   C 
Sbjct: 13  KLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD-PKDFLAEAQIMKKLRHPKLIQLYAVCT 71

Query: 458 EGQELLLIYEYMPNKSL 474
             + + ++ E M   SL
Sbjct: 72  LEEPIYIVTELMKYGSL 88

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 18/109 (16%)

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSR-TSGQG 430
           E PL  +R   E          LG+  FG +YKG L        + +A+K L    + Q 
Sbjct: 1   ELPLSAVRFMEE----------LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQ 50

Query: 431 LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
             EF+ E +L+A+L H N+V LLG   + Q + +++EY+     D+H F
Sbjct: 51  WGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQG--DLHEF 97

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 399 LGQGGFGPVYKGTLAD------GKAIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNLV 450
           LGQG FG VY+G             +A+K ++   +  + + EF NE +++ +    ++V
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERI-EFLNEASVMKEFNCHHVV 72

Query: 451 RLLGCCLEGQELLLIYEYM 469
           RLLG    GQ  L++ E M
Sbjct: 73  RLLGVVSTGQPTLVVMELM 91

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 28/119 (23%)

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKA----------------IAV 420
           EFP   LRL          + KLG+G FG V+    A+G A                +AV
Sbjct: 1   EFPRQQLRL----------KEKLGEGQFGEVHLCE-AEGLAEFLGEGAPEFDGQPVLVAV 49

Query: 421 KRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           K L +  +     +F  E+ ++++L++ N++RLLG C+    L +I EYM N  L+  L
Sbjct: 50  KMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFL 108

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 397 NKLGQGGFGPVYKG-TLADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           NK+G G FG VY    L  G+ +AVK  R+     + ++E  +E+ ++  L+H NLV+  
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY 65

Query: 454 GCCLEGQELLLIYEY 468
           G  +  +++ +  EY
Sbjct: 66  GVEVHREKVYIFMEY 80

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 399 LGQGGFGPVYKGTLA-DGKAIAVKR--LSRTSGQG-------LQEFKNEVNLIAKLQHKN 448
           +G G FG VY G  A  G+ +AVK+  L   S          L     E+ L+ +LQH+N
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSL 474
           +V+ LG  L+   L +  EY+P  S+
Sbjct: 68  IVQYLGSSLDADHLNIFLEYVPGGSV 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 399 LGQGGFGPVYKGTLA--DGKA--IAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG+G FG V +G L+  DG    +AVK  +L   +   ++EF +E   +    H N+++L
Sbjct: 7   LGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKL 66

Query: 453 LGCCLEGQEL------LLIYEYMPNKSLDVHLF 479
           +G C E   L      ++I  +M +  L   L 
Sbjct: 67  IGVCFEASSLQKIPKPMVILPFMKHGDLHSFLL 99

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           F   NK+G+G FG V+K    AD +  A+K+  LS+ + +  +E  +E  ++AKL    +
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSL 474
           +R     L+  +L ++ EY  N  L
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDL 86

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 33/130 (25%)

Query: 389 ATNHFSDENKLGQGGFGPVYKG-TLADGKAIAVKRL---SRTSGQGLQEFKNEVNLIAKL 444
               +    KLG+G FG VYK   +  G+ +A+K++   +   G  +   + E+ ++ KL
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALR-EIKILKKL 64

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPNKS------------LDVHLFGL----SLSLS-- 486
           +H N+V L+          +  E                  +D  L GL    S+ L+  
Sbjct: 65  KHPNVVPLID---------MAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTES 115

Query: 487 -IKCYLLYIL 495
            IKCY+L +L
Sbjct: 116 QIKCYMLQLL 125

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 8/110 (7%)

Query: 393 FSDENKLGQGGFGPVYKG-TLADGKAIAVKRLS-RTSGQGLQEFK-NEVNLIAKLQHKNL 449
           F    K+G+G +G VYK      G+ +A+K++   T  +G+      E++L+ +L H N+
Sbjct: 2   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 61

Query: 450 VRLLGCCLEGQELLLIYEYMPN---KSLDV-HLFGLSLSLSIKCYLLYIL 495
           V+LL       +L L++E++     K +D   L G+ L L IK YL  +L
Sbjct: 62  VKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPL-IKSYLFQLL 110

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 399 LGQGGFGPVYKGT-LADGKAI----AVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG V+KG  + +G +I    A+K +  R+  Q  QE  + +  +  L H  +VRL
Sbjct: 15  LGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRL 74

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
           LG C  G  L L+ +  P  SL  H+
Sbjct: 75  LGIC-PGASLQLVTQLSPLGSLLDHV 99

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 397 NKLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEF----KNEVNLIAKLQHKNLVR 451
            ++G+G +G VYK      G+ +A+K++ R      + F      E+ L+ KL+H N+VR
Sbjct: 5   AQIGEGTYGQVYKARNKKTGELVALKKI-RME-NEKEGFPITAIREIKLLQKLRHPNIVR 62

Query: 452 LLGCCLE--GQELLLIYEYMP---NKSLDVHLFGLSLSLSIKCYLLYIL 495
           L           + +++EYM       LD      + S  IKCY+  +L
Sbjct: 63  LKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTES-QIKCYMKQLL 110

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 235 GQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY 285
            QC   LS  DCR CL   +  ++RC  P   G GRI + SC + +E Y +
Sbjct: 58  AQCRGDLSASDCRSCLATAVSELRRCC-PNKKG-GRIWYDSCFLRYESYPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
            +G+G FG V +G    G+ +AVK +        Q F  E  ++ KL HKNLVRLLG  L
Sbjct: 13  IIGEGEFGAVLQGEYT-GQKVAVKNIK--CDVTAQAFLEETAVMTKLHHKNLVRLLGVIL 69

Query: 458 EGQELLLIYEYMPNKSL 474
               L ++ E M   +L
Sbjct: 70  H-NGLYIVMELMSKGNL 85

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFKN--EVNLIAKLQHKNLVRLLG 454
           K+G+G +G VYK      G+ +A+K++               E+ L+ +L H N+++LL 
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLD 65

Query: 455 CCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
                 +L L++E+M     K +     GL  SL IK YL  +L
Sbjct: 66  VFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESL-IKSYLYQLL 108

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 398 KLGQGGFGPVY------------KGTLADGKA-----IAVKRLSRT-SGQGLQEFKNEVN 439
           KLG+G FG V+            K    +  A     +AVK L    S    ++F  EV 
Sbjct: 12  KLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVK 71

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           ++++L   N+ RLLG C     L +I EYM N  L
Sbjct: 72  ILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 397 NKLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
            ++G G +G VYK   +A G+ +A+K +    G   +  + E++++ + +H N+V   G 
Sbjct: 9   QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGS 68

Query: 456 CLEGQELLLIYEYMPNKSLD 475
            L   +L ++ EY    SL 
Sbjct: 69  YLRRDKLWIVMEYCGGGSLQ 88

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           ++G+G  G V+K      G+ +A+K+  L R  G    +   E+  +   QH  +V+LL 
Sbjct: 7   RIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLD 66

Query: 455 CCLEGQELLLIYEYMP 470
               G   +L+ EYMP
Sbjct: 67  VFPHGSGFVLVMEYMP 82

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 393 FSDENKLGQGGFGPVYKG-TLADGKAIAVKRLSRTS-GQGLQEFK-NEVNLIAKLQHKNL 449
           ++   K+G+G +G VYKG     G+ +A+K++   S  +G+      E++L+ +LQH N+
Sbjct: 2   YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNI 61

Query: 450 VRLLGCCLEGQELLLIYEYMP---NKSLDVHLFGLSLSLS-IKCYLLYIL 495
           V L    ++   L LI+E++     K LD    G  +    +K YL  IL
Sbjct: 62  VCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQIL 111

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 398 KLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQ-EFKNEVNLIAKLQHKNLVRLLGC 455
           ++G+G FG V+ G L AD   +AVK    T    L+ +F  E  ++ +  H N+VRL+G 
Sbjct: 2   RIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGV 61

Query: 456 CLEGQELLLIYE 467
           C + Q + ++ E
Sbjct: 62  CTQKQPIYIVME 73

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 398 KLGQGGFGPVYKGTLADG-------KAIAVKRLSRTSGQGLQ-EFKNEVNLIAKLQHKNL 449
           +LGQG FG VY+G +A G         +A+K ++  +    + EF NE +++ +    ++
Sbjct: 13  ELGQGSFGMVYEG-IAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 71

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGL 481
           VRLLG   +GQ  L+I E M    L  +L  L
Sbjct: 72  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL 103

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 395 DENKLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           +EN + +G  G  YKG ++ +G    VK ++  +     E  +    + KLQH N+V+L+
Sbjct: 694 EENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIAD----MGKLQHPNIVKLI 749

Query: 454 GCCLEGQELLLIYEYMPNKSLDVHLFGLS 482
           G C   +   LI+EY+  K+L   L  LS
Sbjct: 750 GLCRSEKGAYLIHEYIEGKNLSEVLRNLS 778

Length = 968

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 393 FSDENKLGQGGFGPVYKG-TLADGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQHKN 448
           FSD  ++G G FG VY    + + + +A+K++S   + S +  Q+   EV  + KL+H N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKS---LDVH 477
            ++  GC L      L+ EY    +   L+VH
Sbjct: 77  TIQYRGCYLREHTAWLVMEYCLGSASDLLEVH 108

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKA---IAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           E  +G G FG V +G L   GK    +A+K L S  + +  ++F +E +++ +  H N++
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNII 68

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            L G   + + +++I E+M N +LD  L
Sbjct: 69  HLEGVVTKSRPVMIITEFMENGALDSFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIA---VKRLSRTSGQGLQ-EFKNEVNLIAKLQHKNLVRL 452
           +++G G FG V  G    G + A   VK L  ++    Q  F  EV    +L H N+++ 
Sbjct: 1   DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQC 60

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
           LG C+E    LL+ E+ P   L  +L
Sbjct: 61  LGQCIESIPYLLVLEFCPLGDLKNYL 86

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 399 LGQGGFGPVYKGT---LADGKA-----IAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           LGQG F  ++KG    + D        + +K L ++     + F    +++++L HK+LV
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLV 62

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
              G C+ G E +++ EY+   SLD +L
Sbjct: 63  LNYGVCVCGDESIMVQEYVKFGSLDTYL 90

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQ 445
             +F  E K+G+G F  VYK   L DG+ +A+K++        +  Q+   E++L+ +L 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMP 470
           H N+++ L   +E  EL ++ E   
Sbjct: 61  HPNVIKYLASFIENNELNIVLELAD 85

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAI----AVKRLSR-TSGQGLQEFKNEVNLIAKLQH 446
           F     LG G FG VYKG  + +G+ +    A+K L   TS +  +E  +E  ++A + +
Sbjct: 9   FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 68

Query: 447 KNLVRLLGCCLEGQELLLIYEYMP 470
            ++ RLLG CL    + LI + MP
Sbjct: 69  PHVCRLLGICLT-STVQLITQLMP 91

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN 436
           E P   LRL          E KLGQG FG V+ GT      +A+K L +      + F  
Sbjct: 2   EIPRESLRL----------EVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQ 50

Query: 437 EVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           E  ++ KL+H+ LV+L     E + + ++ EYM   SL
Sbjct: 51  EAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSL 87

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 398 KLGQGGFGPVYK------GTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           +LG G FG VYK      G LA  K I  K     S + L+++  E+ ++A   H  +V+
Sbjct: 19  ELGDGAFGKVYKAKNKETGALAAAKVIETK-----SEEELEDYMVEIEILATCNHPYIVK 73

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLS 486
           LLG      +L ++ E+ P  ++D  +  L   L+
Sbjct: 74  LLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLT 108

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           ++   K+GQG  G V+    +A G+ +A+K+++       +   NE+ ++ +L++ N+V 
Sbjct: 21  YTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVN 80

Query: 452 LLGCCLEGQELLLIYEYMPNKSL 474
            L   L G EL ++ EY+   SL
Sbjct: 81  FLDSFLVGDELFVVMEYLAGGSL 103

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           K+GQG  G VY    +A G+ +A+K+++       +   NE+ ++ + +H N+V  L   
Sbjct: 26  KIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSY 85

Query: 457 LEGQELLLIYEYMPNKSL 474
           L G EL ++ EY+   SL
Sbjct: 86  LVGDELWVVMEYLAGGSL 103

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 398 KLGQGGFGPVYKGTLAD---GKA---IAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLV 450
           +LGQG FG VY+G   D   G+A   +AVK ++ + S +   EF NE +++      ++V
Sbjct: 13  ELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVV 72

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHLFGL 481
           RLLG   +GQ  L++ E M +  L  +L  L
Sbjct: 73  RLLGVVSKGQPTLVVMELMAHGDLKSYLRSL 103

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           E KLG G FG V+  T      +AVK + +     ++ F  E N++  LQH  LV+ L  
Sbjct: 11  EKKLGAGQFGEVWMATYNKHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVK-LHA 68

Query: 456 CLEGQELLLIYEYMPNKSL 474
            +  + + +I E+M   SL
Sbjct: 69  VVTKEPIYIITEFMAKGSL 87

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 45.9 bits (107), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQH-KNLVRLL 453
           KLG+G FG VY     D K +A+K L++      + ++ F  E+ ++A L H  N+V+L 
Sbjct: 7   KLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 454 GCCLEGQELLLIYEYMPNKSLD 475
               +   L L+ EY+   SL+
Sbjct: 65  DFFQDEGSLYLVMEYVDGGSLE 86

Length = 384

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 396 ENKLGQGGFGPVYKGTLA-DGK---AIAVKRLS--RTSGQGLQEFKNEVNLIAKLQHKNL 449
           E  +G G FG V  G L   GK    +A+K L    T  Q  ++F +E +++ +  H N+
Sbjct: 9   EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQ-RRDFLSEASIMGQFDHPNI 67

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           + L G   + + ++++ EYM N SLD  L
Sbjct: 68  IHLEGVVTKSKPVMIVTEYMENGSLDAFL 96

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 399 LGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE 458
           +G+G FG V  G    G  +AVK +   +    Q F  E +++ +L+H NLV+LLG  +E
Sbjct: 14  IGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVE 70

Query: 459 GQ-ELLLIYEYMPNKSL 474
            +  L ++ EYM   SL
Sbjct: 71  EKGGLYIVTEYMAKGSL 87

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 398 KLGQGGFGPVYK-GTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           KLG+G +G VYK   L+D +  A+K   L   S +  ++  NE+ ++A + H N++    
Sbjct: 7   KLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKE 66

Query: 455 CCLEGQELLLIYEYMP 470
             L+G +L ++ EY P
Sbjct: 67  AFLDGNKLCIVMEYAP 82

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLS-RTSGQGLQEFKNEVNLIAKLQH---KNLVRLL 453
           +G+G +G VY+G  +  G+ +A+K ++  T    + + + EV L+++L+     N+ +  
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYY 68

Query: 454 GCCLEGQELLLIYEY 468
           G  L+G  L +I EY
Sbjct: 69  GSYLKGPRLWIIMEY 83

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 8/78 (10%)

Query: 399 LGQGGFGPVYKGTL--ADGKAI--AVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           +G+G FG VY GTL  +DG+ I  AVK L+R T  + +++F  E  ++    H N++ LL
Sbjct: 3   IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLL 62

Query: 454 GCCL--EGQELLLIYEYM 469
           G CL  EG  L+++  YM
Sbjct: 63  GICLPSEGSPLVVL-PYM 79

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS-RTSGQGLQEFKNEVNLIAKLQHKNLV 450
           F+    +G+G FG VYK       + +A+K +    +   +++ + E+  +++ +   + 
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYIT 62

Query: 451 RLLGCCLEGQELLLIYEYMPNKSL 474
           +  G  L+G +L +I EY    S 
Sbjct: 63  KYYGSFLKGSKLWIIMEYCGGGSC 86

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFK-NEVNLIAKLQHKNLVRLLGC 455
           KLG+G +  VYKG     G+ +A+K +   + +G       E++L+ +L+H+N+VRL   
Sbjct: 7   KLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDV 66

Query: 456 CLEGQELLLIYEYMPN---KSLDVH 477
                +L+L++EYM     K +D H
Sbjct: 67  IHTENKLMLVFEYMDKDLKKYMDTH 91

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQHKN 448
           F+D  ++G G FG VY        + +A+K++S   + S +  Q+   EV  + +++H N
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDV 476
            +   GC L      L+ EY    + D+
Sbjct: 87  SIEYKGCYLREHTAWLVMEYCLGSASDL 114

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 399 LGQGGFGPVY------KGTLADGKAIAVKRLS-RTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           LG+G FG V       +G    G+ +AVK L   + G  + + K E+ ++  L H+N+V+
Sbjct: 12  LGEGHFGKVELCRYDPEGD-NTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVK 70

Query: 452 LLGCCLE--GQELLLIYEYMPNKSLDVHL 478
             G C E  G  + LI E++P+ SL  +L
Sbjct: 71  YKGICTEDGGNGIKLIMEFLPSGSLKEYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQ---GLQEFKNEVNLIAKLQHKN 448
           F   +++G G FG VY  T +   + +AVK++S +  Q     Q+   EV  + +L+H N
Sbjct: 23  FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPN 82

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKS---LDVH 477
            +   GC L+     L+ EY    +   L+VH
Sbjct: 83  TIEYKGCYLKEHTAWLVMEYCLGSASDLLEVH 114

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           +LG G FG V  G       +A+K +   S     EF  E  ++ KL H+ LV+L G C 
Sbjct: 11  ELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCT 69

Query: 458 EGQELLLIYEYMPNKSL 474
           + + + ++ EYM N  L
Sbjct: 70  KQRPIYIVTEYMSNGCL 86

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)

Query: 398 KLGQGGFGPVY------------KGTLADGKA-----IAVKRLSRTSGQGLQ-EFKNEVN 439
           KLG+G FG V+            K    D        +AVK L   + +  + +F  E+ 
Sbjct: 12  KLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIK 71

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           ++++L+  N++RLL  C+    L +I EYM N  L+  L
Sbjct: 72  IMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFL 110

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 11/84 (13%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLS-RTSGQGL-QEFKNEVNLIAKLQ---HKNLV 450
            ++G+G +G VYK   L  G+ +A+K++    S +G+      E+ L+ +L+   H N+V
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIV 64

Query: 451 RLLGCCL-----EGQELLLIYEYM 469
           RLL  C         +L L++E++
Sbjct: 65  RLLDVCHGPRTDRELKLTLVFEHV 88

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             KLG G FG V+ GT      +AVK L +      + F  E  ++ KL+H  LV+L   
Sbjct: 11  IKKLGNGQFGEVWMGTWNGNTKVAVKTL-KPGTMSPESFLEEAQIMKKLRHDKLVQLYAV 69

Query: 456 CLEGQELLLIYEYMPNKSL 474
             E + + ++ EYM   SL
Sbjct: 70  VSE-EPIYIVTEYMSKGSL 87

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
             +  K+G+G  G V   T  + G+ +AVK++     Q  +   NEV ++   QH N+V 
Sbjct: 21  LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVE 80

Query: 452 LLGCCLEGQELLLIYEYMPNKSL 474
           +    L G EL ++ E++   +L
Sbjct: 81  MYSSYLVGDELWVVMEFLEGGAL 103

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVKRLSRTS-GQGLQEFK-NEVNLIAKLQHKNLVRLLG 454
           K+G+G +G V+K       + +A+KR+      +G+      E+ L+ +L+HKN+VRL  
Sbjct: 7   KIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYD 66

Query: 455 CCLEGQELLLIYEY 468
                ++L L++EY
Sbjct: 67  VLHSDKKLTLVFEY 80

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--EVNLIAKLQ-HKNLVRLL 453
           +LG G FG VY       G+ +A+K++ +      +E  N  EV  + KL  H N+V+L 
Sbjct: 6   QLGDGTFGSVYLARNKETGELVAIKKMKKKF-YSWEECMNLREVKSLRKLNEHPNIVKLK 64

Query: 454 GCCLEGQELLLIYEYM 469
               E  EL  ++EYM
Sbjct: 65  EVFRENDELYFVFEYM 80

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 399 LGQGGFGPVYKGTLAD------GKAIAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHKNLV 450
           LG+G FG V K              +AVK L    + + L +  +E+ ++  + +HKN++
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNII 79

Query: 451 RLLGCCLEGQELLLIYEY 468
            LLG C +   L ++ EY
Sbjct: 80  NLLGVCTQEGPLYVVVEY 97

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 399 LGQGGFGPVYKGTLAD-GKAIAVKRL-----SRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LGQG FG VY    AD G+ +AVK++     S  + + +   + E+ L+  L H+ +V+ 
Sbjct: 10  LGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQY 69

Query: 453 LGCCLEGQE--LLLIYEYMPNKSLDVHL 478
            GC  +  E  L +  E+MP  S+   L
Sbjct: 70  YGCLRDPMERTLSIFMEHMPGGSIKDQL 97

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 398 KLGQGGFGPVYKGTLADGK----AIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRL 452
            +G+G FG VY+G     +    A+AVK     +   ++E F  E  ++ +  H ++V+L
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           +G   E   + ++ E  P   L  +L     SL +   +LY  
Sbjct: 73  IGVITE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSY 114

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           +LG G FG V+ G       +A+K +        ++F  E  ++ KL H  LV+L G C 
Sbjct: 11  ELGSGQFGVVHLGKWRAQIKVAIKAI-NEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCT 69

Query: 458 EGQELLLIYEYMPNKSL 474
           + + L ++ E+M N  L
Sbjct: 70  QQKPLYIVTEFMENGCL 86

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)

Query: 398 KLGQGGFGPV---------------YKGTLADGKA--IAVKRL-SRTSGQGLQEFKNEVN 439
           KLG+G FG V               +   +  G+   +AVK L    +     +F  EV 
Sbjct: 12  KLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVK 71

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           ++++L+  N++RLLG C++   L +I EYM N  L+  L
Sbjct: 72  ILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFL 110

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 399 LGQGGFGPVYK------GTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG VYK      G  A  K I ++     S + L++F  E++++++ +H N+V L
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIE-----SEEELEDFMVEIDILSECKHPNIVGL 67

Query: 453 LGCCLEGQELLLIYEYMPNKSLD 475
                   +L ++ E+    +LD
Sbjct: 68  YEAYFYENKLWILIEFCDGGALD 90

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 399 LGQGGFGPVYKGTLAD-GKAIAVKRL-----SRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG+G FG VY    AD G+ +AVK++     S+ + + +   + E+ L+  L+H  +V+ 
Sbjct: 10  LGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQY 69

Query: 453 LGCCLEGQE--LLLIYEYMPNKSLDVHL 478
            GC  + +E  L +  EYMP  S+   L
Sbjct: 70  YGCLRDPEEKKLSIFVEYMPGGSIKDQL 97

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQHKN 448
           F  E K+G+G F  VY+ T L D K +A+K++        +  Q+   E++L+ +L H N
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63

Query: 449 LVRLLGCCLEGQELLLIYE 467
           +++ L   +E  EL ++ E
Sbjct: 64  VIKYLDSFIEDNELNIVLE 82

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN---EVNLIAKLQHKN 448
           F+D  ++G G FG VY    +   + +A+K++S +  Q  +++++   EV  + +L+H N
Sbjct: 17  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN 76

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKS---LDVH 477
            +   GC L      L+ EY    +   L+VH
Sbjct: 77  TIEYKGCYLREHTAWLVMEYCLGSASDILEVH 108

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 398 KLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           K+G+G  G V   T+ + GK +AVK++     Q  +   NEV ++   QH+N+V +    
Sbjct: 27  KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY 86

Query: 457 LEGQELLLIYEYMPNKSL 474
           L G EL ++ E++   +L
Sbjct: 87  LVGDELWVVMEFLEGGAL 104

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 18/103 (17%)

Query: 374 ESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGT-LADGK-----AIAVKRLSRTS 427
           E  EFP   L+              LG G FG V + T    GK      +AVK L  ++
Sbjct: 31  EKWEFPRDNLQFG----------KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASA 80

Query: 428 GQGLQE-FKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY 468
               +E   +E+ +++ L QHKN+V LLG C  G  +L+I EY
Sbjct: 81  HTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEY 123

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKAI--AVKRLSRTSGQG-LQEFKNEVNLIAKL-QHKNLV 450
           ++ +G+G FG V K  +  DG  +  A+KR+   + +   ++F  E+ ++ KL  H N++
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 71

Query: 451 RLLGCCLEGQELLLIYEYMPNKSL 474
            LLG C     L L  EY P+ +L
Sbjct: 72  NLLGACEHRGYLYLAIEYAPHGNL 95

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVKRLS-RTSGQGLQEFK-NEVNLIAKLQHKNLVRLLG 454
           K+G+G +G VYK      G+ +A+K++   T  +G+      E++L+ +L H N+VRLL 
Sbjct: 6   KIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLD 65

Query: 455 CCLEGQELLLIYEYMP---NKSLD-VHLFGLSLSLSIKCYLLYIL 495
                 +L L++E++     K +D   L GL   L IK YL  +L
Sbjct: 66  VVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPL-IKSYLYQLL 109

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           KLG+G +  VYKG +  +GK +A+K  RL    G      + E +L+  L+H N+V L  
Sbjct: 12  KLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIR-EASLLKGLKHANIVLLHD 70

Query: 455 CCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
                + L L++EY+     + +D H  GL    ++K +L  +L
Sbjct: 71  IIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPE-NVKLFLFQLL 113

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           +LG G FG VYK    +   +A  ++  T S + L+++  E++++A   H N+V+LL   
Sbjct: 12  ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 71

Query: 457 LEGQELLLIYEYMPNKSLDVHLFGLSLSLS 486
                L ++ E+    ++D  +  L   L+
Sbjct: 72  YYENNLWILIEFCAGGAVDAVMLELERPLT 101

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 399 LGQGGFGPVYKGTLAD-GKAIAVKRL-----SRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LGQG FG VY     D G+ +A K++     S  + + +   + E+ L+  LQH+ +V+ 
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQY 69

Query: 453 LGCCLE-GQELLLIY-EYMPNKSLDVHL 478
            GC  +  ++ L I+ EYMP  S+   L
Sbjct: 70  YGCLRDRAEKTLTIFMEYMPGGSVKDQL 97

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFK-----NEVNLIAKL 444
           + F     +G+G F  V         K  A+K L +   Q ++E K      E  ++ +L
Sbjct: 1   DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKR--QLIKEKKVKYVKIEKEVLTRL 58

Query: 445 -QHKNLVRLLGCCLEGQELLLIYEYMPNKSL--DVHLFGLSLSLSIKCYLLYI 494
             H  +++L     + + L  + EY PN  L   +  +G   SL  KC   Y 
Sbjct: 59  NGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYG---SLDEKCTRFYA 108

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN 436
           E P   LRL          + KLGQG FG V+ GT      +A+K L +      + F  
Sbjct: 2   EIPRESLRL----------DVKLGQGCFGEVWMGTWNGTTKVAIKTL-KPGTMMPEAFLQ 50

Query: 437 EVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           E  ++ KL+H  LV L     E + + ++ E+M   SL
Sbjct: 51  EAQIMKKLRHDKLVPLYAVVSE-EPIYIVTEFMGKGSL 87

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 399 LGQGGFGPVYKGTL-------ADGKAIAVKRLSRTSGQGLQ---EFKNEVNLIAKLQHKN 448
           LGQG F  +YKG L         G    V  + +  G   +    F    +L+++L HK+
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH 62

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDV--HLFGLSLSLSIKCYLLYIL 495
           LV+L G C+   E +++ EY+    LDV  H    ++SL  K  +   L
Sbjct: 63  LVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQL 110

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 399 LGQGGFGPVYKGTLAD-GKAIAVKR--LSRTSGQGLQE--------FKNEVNLIAKLQHK 447
           +G+G +G VY       G+ +AVK+  L  T                ++E+  +  L H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 448 NLVRLLGCCLEGQELLLIY-EYMPNKSL 474
           N+V+ LG     +E L I+ EY+P  S+
Sbjct: 69  NIVQYLG-FETTEEYLSIFLEYVPGGSI 95

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 396 ENKLGQGGFGPVYKGTLA-DGK---AIAVKRLSRTSGQGLQE--FKNEVNLIAKLQHKNL 449
           E  LG G FG + +G L    K    +A+  L R      Q   F  E   + +  H N+
Sbjct: 10  ERILGTGRFGELCRGCLKLPSKRELPVAIHTL-RAGCSDKQRRGFLAEALTLGQFDHSNI 68

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           VRL G    G  ++++ EYM N +LD  L
Sbjct: 69  VRLEGVITRGNTMMIVTEYMSNGALDSFL 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 399 LGQGGFGPVYKGT---LADGKA---IAVKRLSRTSGQGLQE-FKNEVNLIAKL-QHKNLV 450
           LG G FG V + T   L+   A   +AVK L  T+    +E   +E+ +++ L  H+N+V
Sbjct: 43  LGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIV 102

Query: 451 RLLGCCLEGQELLLIYEY 468
            LLG C  G  +L+I EY
Sbjct: 103 NLLGACTIGGPILVITEY 120

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 398 KLGQGGFGPVYKG-TLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           K+GQG  G VY    +A G+ +A+K+++       +   NE+ ++ + ++ N+V  L   
Sbjct: 26  KIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 85

Query: 457 LEGQELLLIYEYMPNKSL 474
           L G EL ++ EY+   SL
Sbjct: 86  LVGDELWVVMEYLAGGSL 103

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 399 LGQGGFGPVYKGTLADGKAI---AVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           LG+G FG V +G L    +I   AVK  +++  +   +++F +E   + +  H N++RL+
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 454 GCCLEGQEL------LLIYEYMPNKSLDVHLFGL 481
           G CL+  E       ++I  +M  K  D+H F L
Sbjct: 67  GVCLQTVESEGYPSPVVILPFM--KHGDLHSFLL 98

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQHK 447
           +F  E K+G+G F  VY+ T L DG  +A+K++        +   +   E++L+ +L H 
Sbjct: 3   NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 62

Query: 448 NLVRLLGCCLEGQELLLIYE 467
           N+++     +E  EL ++ E
Sbjct: 63  NVIKYYASFIEDNELNIVLE 82

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAI-AVKRLSRTSGQGLQEFK---NEVNLIAKLQH 446
             F    ++GQGG+G V+     D   I A+KR+ ++    L E +    E +++   + 
Sbjct: 1   KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS 60

Query: 447 KNLVRLLGCCLEGQELLLIYEYMP 470
           + LV+LL    + + L L  EY+P
Sbjct: 61  EWLVKLLYAFQDDEYLYLAMEYVP 84

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLS---RTSGQG---LQEFKNEVNLIAKLQHKNLVR 451
           LG G F   Y+   +  G  +AVK+++    TS +    ++  + E+ L+A+L H +++R
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67

Query: 452 LLGCCLEGQELLLIYEYMPNKSLD--VHLFG-LSLSLSIKCYLLYIL 495
           +LG   E     L  E+M   S+   +  +G    ++ I  Y   +L
Sbjct: 68  MLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIIN-YTEQLL 113

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 398 KLGQGGFGPVYKGTLADG---KAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLL 453
           ++G G FG V  G +  G     + VK L  ++  Q   +F  E      LQH NL++ L
Sbjct: 2   EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCL 61

Query: 454 GCCLEGQELLLIYEYMP 470
           G C E    LL+ E+ P
Sbjct: 62  GQCTEVTPYLLVMEFCP 78

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 393 FSDENKLGQGGFGPVYKGTLADGK-AIAVKRLSRTSGQG-LQEFKNEVNLIAKLQHKNLV 450
           F+   ++G+G FG VYKG     K  +A+K +     +  +++ + E+ ++++     + 
Sbjct: 6   FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYIT 65

Query: 451 RLLGCCLEGQELLLIYEYM 469
           R  G  L+G +L +I EY+
Sbjct: 66  RYYGSYLKGTKLWIIMEYL 84

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           K+GQG  G VY    +A G+ +A+++++       +   NE+ ++ + ++ N+V  L   
Sbjct: 27  KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86

Query: 457 LEGQELLLIYEYMPNKSL 474
           L G EL ++ EY+   SL
Sbjct: 87  LVGDELWVVMEYLAGGSL 104

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 393 FSDENKLGQGGFGPVYKG---TLADGKAIAVKRL--SRTSGQGL-QEFKNEVNLIAKLQH 446
           +  E  +G+G +G VYK       DGK  A+K+    +    G+ Q    E+ L+ +L+H
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61

Query: 447 KNLVRLLGCCLEGQE--LLLIYEY 468
           +N+V L+   LE  +  + L+++Y
Sbjct: 62  ENVVSLVEVFLEHADKSVYLLFDY 85

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 396 ENKLGQGGFGPVYKGTLA-DGKAI--AVKRLSR-TSGQGLQEFKNEVNLIAKL-QHKNLV 450
           E+ +G+G FG V +  +  DG  +  A+K L    S    ++F  E+ ++ KL  H N++
Sbjct: 7   EDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNII 66

Query: 451 RLLGCCLEGQELLLIYEYMPNKSL 474
            LLG C     L +  EY P  +L
Sbjct: 67  NLLGACENRGYLYIAIEYAPYGNL 90

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 399 LGQGGFGP--VYKGTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           LG+G FG   +Y+ T  D   +  K   L+R S +  ++  NE+ +++ LQH N++    
Sbjct: 8   LGKGAFGEATLYRRT-EDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYN 66

Query: 455 CCLEGQELLLIYEY 468
             ++   LL+  EY
Sbjct: 67  HFMDDNTLLIEMEY 80

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLS--RTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
             +G+G FG V K    +DGK +  K +     + +  Q+  +EVN++ +L+H N+VR  
Sbjct: 6   ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYY 65

Query: 454 GCCL--EGQELLLIYEY 468
              +    Q L ++ EY
Sbjct: 66  DRIIDRSNQTLYIVMEY 82

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 398 KLGQGGFGPVYKGTL-ADGKAIAVKRL---SRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
            LGQG  G VYK      GK  A+K++        +  ++   E+  +   +   +V+  
Sbjct: 8   VLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFR--KQLLRELKTLRSCESPYVVKCY 65

Query: 454 GCCLEGQELLLIYEYMPNKSLD 475
           G   +  E+ ++ EYM   SL 
Sbjct: 66  GAFYKEGEISIVLEYMDGGSLA 87

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 399 LGQGGFGPVYKGTLA-DGKAI----AVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG G FG VYKG    DG+ +    A+K L   TS +  +E  +E  ++A +    + RL
Sbjct: 15  LGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRL 74

Query: 453 LGCCLEGQELLLIYEYMP 470
           LG CL    + L+ + MP
Sbjct: 75  LGICLT-STVQLVTQLMP 91

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 398 KLGQGGFGPVYKGTLADGKA------IAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           K+G+G FG +Y   LA  K+      I    L++   +  +  K EV L+AK++H N+V 
Sbjct: 7   KIGEGSFGKIY---LAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVT 63

Query: 452 LLGCCLEGQELLLIYEY 468
                 E   L ++ EY
Sbjct: 64  FFASFQENGRLFIVMEY 80

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 398 KLGQGGFGPVYKG---TLADGKAIAVKRLSRTSGQGL--QEFKNEVNLIAKLQHKNLVRL 452
           +LG G FG V KG        K +AVK L   +       E   E N++ +L +  +VR+
Sbjct: 2   ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRM 61

Query: 453 LGCCLEGQELLLIYE 467
           +G C E +  +L+ E
Sbjct: 62  IGIC-EAESWMLVME 75

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 393 FSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           + D   LG G  G V+    +D  K +AVK++  T  Q ++    E+ +I +L H N+V+
Sbjct: 7   YMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVK 66

Query: 452 L 452
           +
Sbjct: 67  V 67

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 399 LGQGGFGPVYKGTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
                   + K        +AVK+  L   S + L+  + E+    +LQH N++  +   
Sbjct: 10  FEDLMIVHLAKHK-PTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSF 68

Query: 457 LEGQELLLIYEYM 469
           +   EL ++   M
Sbjct: 69  IVDSELYVVSPLM 81

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.88
KOG3653	534	consensus Transforming growth factor beta/activin	99.81
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.81
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.69
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.67
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.66
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.62
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.61
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.58
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.55
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.53
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.52
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.5
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.41
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.39
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.38
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.36
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.35
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.33
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.3
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.24
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.21
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.21
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.2
KOG0605	550	consensus NDR and related serine/threonine kinases	99.19
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.19
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.17
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.17
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.16
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.16
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.16
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.16
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.15
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.15
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.14
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.14
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.14
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.14
KOG0198	313	consensus MEKK and related serine/threonine protei	99.13
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.12
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.12
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.12
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.12
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.12
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.12
PHA02988	283	hypothetical protein; Provisional	99.12
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.11
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.11
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.11
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.1
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.1
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.1
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.1
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.09
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.09
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.09
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.09
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.08
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.08
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.07
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.07
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.07
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.07
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.07
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.07
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.07
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.07
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.07
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.06
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.06
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.06
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.06
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.05
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.05
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.05
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.05
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.04
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.04
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.04
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.04
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.04
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.04
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.04
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.04
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.03
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.03
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.03
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.03
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.03
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.03
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.03
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.02
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.02
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.02
KOG0586	596	consensus Serine/threonine protein kinase [General	99.02
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.02
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.02
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.02
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.01
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.01
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.01
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.01
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.01
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.01
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.01
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.01
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.01
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.01
KOG0578	550	consensus p21-activated serine/threonine protein k	99.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	98.99
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	98.99
PTZ00267	478	NIMA-related protein kinase; Provisional	98.99
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	98.99
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	98.99
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	98.99
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	98.99
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	98.99
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	98.99
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	98.99
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	98.99
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	98.99
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	98.99
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	98.99
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	98.98
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	98.98
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	98.98
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	98.98
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	98.98
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	98.98
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	98.98
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	98.97
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	98.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	98.97
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	98.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	98.97
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	98.97
KOG4717	864	consensus Serine/threonine protein kinase [Signal	98.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	98.97
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	98.96
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	98.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	98.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	98.96
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	98.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	98.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	98.96
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	98.96
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	98.95
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	98.95
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	98.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	98.95
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	98.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	98.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	98.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	98.94
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	98.94
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	98.94
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	98.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	98.94
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	98.94
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	98.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	98.94
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	98.93
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	98.93
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	98.93
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	98.93
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	98.92
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	98.92
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	98.92
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	98.92
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	98.92
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	98.92
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	98.92
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	98.91
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	98.91
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	98.91
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	98.91
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	98.91
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	98.91
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	98.91
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	98.91
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	98.91
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	98.91
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	98.91
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.91
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	98.91
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	98.91
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	98.91
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	98.9
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	98.9
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	98.9
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	98.9
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	98.9
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	98.9
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	98.9
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	98.9
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	98.9
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	98.89
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	98.89
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	98.89
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	98.89
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	98.89
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	98.89
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	98.88
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	98.88
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	98.88
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	98.88
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	98.88
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	98.88
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	98.88
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	98.88
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	98.88
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	98.88
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	98.88
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	98.88
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	98.88
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	98.87
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	98.87
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	98.87
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.87
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	98.87
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	98.86
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	98.86
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	98.86
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	98.86
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	98.86
PTZ00266	1021	NIMA-related protein kinase; Provisional	98.86
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	98.86
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	98.85
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	98.85
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	98.85
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	98.85
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	98.85
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	98.85
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	98.85
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	98.85
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	98.85
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	98.84
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	98.84
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	98.84
PTZ00283	496	serine/threonine protein kinase; Provisional	98.84
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	98.84
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	98.84
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	98.84
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	98.84
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	98.83
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	98.83
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	98.83
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	98.83
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	98.83
KOG4721	904	consensus Serine/threonine protein kinase, contain	98.83
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	98.82
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	98.82
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	98.82
KOG0201	467	consensus Serine/threonine protein kinase [Signal	98.82
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	98.82
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	98.81
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	98.81
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	98.81
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	98.8
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	98.8
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	98.8
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	98.8
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	98.79
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	98.79
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	98.79
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.79
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	98.79
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	98.79
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	98.79
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	98.79
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	98.79
PRK09188	365	serine/threonine protein kinase; Provisional	98.79
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.79
KOG0610	459	consensus Putative serine/threonine protein kinase	98.79
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	98.78
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	98.78
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	98.77
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	98.77
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	98.77
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	98.77
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	98.77
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	98.77
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	98.77
PHA03212	391	serine/threonine kinase US3; Provisional	98.76
KOG1989	738	consensus ARK protein kinase family [Signal transd	98.76
KOG0589	426	consensus Serine/threonine protein kinase [General	98.76
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	98.75
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	98.75
KOG0577	948	consensus Serine/threonine protein kinase [Signal	98.75
PLN00009	294	cyclin-dependent kinase A; Provisional	98.75
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	98.75
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	98.74
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	98.74
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	98.73
PHA03209	357	serine/threonine kinase US3; Provisional	98.73
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	98.73
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	98.73
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	98.73
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	98.73
KOG0584	632	consensus Serine/threonine protein kinase [General	98.72
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	98.72
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	98.72
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	98.72
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	98.71
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	98.71
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	98.71
PHA03211	461	serine/threonine kinase US3; Provisional	98.71
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	98.7
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	98.7
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.7
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	98.69
KOG0694	694	consensus Serine/threonine protein kinase [Signal	98.69
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.69
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	98.69
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	98.69
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	98.69
PRK10345	210	hypothetical protein; Provisional	98.68
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	98.68
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	98.68
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.68
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.67
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	98.67
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	98.67
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	98.66
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.66
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	98.65
PTZ00024	335	cyclin-dependent protein kinase; Provisional	98.65
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	98.64
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	98.64
PTZ00036	440	glycogen synthase kinase; Provisional	98.63
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	98.62
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	98.62
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	98.61
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	98.6
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.6
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	98.6
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	98.6
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	98.6
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	98.59
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	98.56
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	98.55
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	98.55
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	98.55
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	98.54
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.53
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	98.53
PHA03207	392	serine/threonine kinase US3; Provisional	98.52
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.51
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	98.51
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	98.5
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	98.5
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	98.5
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.49
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	98.49
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	98.49
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	98.49
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	98.49
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	98.49
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	98.49
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	98.48
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	98.47
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	98.47
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	98.45
PTZ00284	467	protein kinase; Provisional	98.41
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	98.38
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.38
PHA03210	501	serine/threonine kinase US3; Provisional	98.37
PRK14879	211	serine/threonine protein kinase; Provisional	98.36
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	98.34
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.34
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.33
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.26
KOG1152	772	consensus Signal transduction serine/threonine kin	98.26
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.2
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.18
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	98.18
KOG0690	516	consensus Serine/threonine protein kinase [Signal	98.17
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.17
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.17
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.14
KOG0596	677	consensus Dual specificity; serine/threonine and t	98.13
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	98.02
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	97.99
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	97.97
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.9
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.85
smart00090	237	RIO RIO-like kinase.	97.82
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	97.79
KOG0695	593	consensus Serine/threonine protein kinase [Signal	97.78
KOG1167	418	consensus Serine/threonine protein kinase of the C	97.78
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	97.72
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	97.71
KOG0696	683	consensus Serine/threonine protein kinase [Signal	97.67
KOG1027	903	consensus Serine/threonine protein kinase and endo	97.65
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.55
PHA02882	294	putative serine/threonine kinase; Provisional	97.52
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.46
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	97.43
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	97.43
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.39
KOG1290	590	consensus Serine/threonine protein kinase [Signal	97.28
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.28
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	97.14
PRK12274	218	serine/threonine protein kinase; Provisional	97.11
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	97.11
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.1
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.01
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	96.97
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	96.92
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	96.92
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.9
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	96.57
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	96.3
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	96.29
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	95.85
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	95.61
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	95.51
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	95.5
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	94.66
COG0661	517	AarF Predicted unusual protein kinase [General fun	93.33
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	93.3
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	93.24
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	92.02
KOG1243	690	consensus Protein kinase [General function predict	91.96
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	90.2
KOG1235	538	consensus Predicted unusual protein kinase [Genera	89.28
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	87.59
PRK09550	401	mtnK methylthioribose kinase; Reviewed	87.36
PRK10593	297	hypothetical protein; Provisional	86.63
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	86.3
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	85.69
KOG0590	601	consensus Checkpoint kinase and related serine/thr	85.28
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	84.82
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	84.15
KOG1266	458	consensus Protein kinase [Signal transduction mech	82.87
KOG3087	229	consensus Serine/threonine protein kinase [General	82.5
PF01636	239	APH: Phosphotransferase enzyme family This family	82.17
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	81.28
COG0478	304	RIO-like serine/threonine protein kinase fused to	80.47
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	80.44

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.88  E-value=4.6e-23  Score=172.05  Aligned_cols=99  Identities=32%  Similarity=0.646  Sum_probs=75.9

Q ss_pred             cccCC---CCcc-CCCchHHHHHHHHHhhHHhhhhc-C--CCceeeccCCCCCeEEEEEeccCCCChhchHHHHHHHHHH
Q 011025           75 VLSCA---VSNN-TASNTFTSNLNILFNQKLHSEAG-K--SLYYNASEGEFPDSVYGLYLCKFNVSFQSCQNCIVAAVNS  147 (495)
Q Consensus        75 ~~~c~---~~~~-~~~~~f~~nl~~ll~~~l~~~a~-~--~~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~  147 (495)
                      |..|+   .+++ +++++|+++++.||+. |.+.++ .  .+|++++.|.+++++||++||++|+++++|..||+.|+..
T Consensus         1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~-l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~   79 (106)
T PF01657_consen    1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSS-LVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVAN   79 (106)
T ss_dssp             ---E---SSB----TT-THHHHHHHHHHH-HHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCC
T ss_pred             CCcCCCCCCCCcCCCCchHHHHHHHHHHH-HHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHH
Confidence            45788   3366 5677899999999999 887766 3  5899998888889999999999999999999999999999


Q ss_pred             HHhcCCCCceEEEEeecCceEEEEcCCCC
Q 011025          148 VLQKCSGTKEAFIWYQVQECMVRFSDHSS  176 (495)
Q Consensus       148 ~~~~C~~~~~a~i~~~~~~C~lRy~~~~f  176 (495)
                      +.+.|++++||+||++  +|+||||+++|
T Consensus        80 ~~~~C~~~~g~~v~~~--~C~lRY~~~~F  106 (106)
T PF01657_consen   80 ISSCCPGSRGGRVWYD--SCFLRYENYPF  106 (106)
T ss_dssp             HHHHTTSBSSEEEEES--SEEEEEESS--
T ss_pred             HHHhCCCCceEEEECC--CEEEEEECCCC
Confidence            9999999999999999  99999999986

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=5e-20  Score=182.51  Aligned_cols=101  Identities=30%  Similarity=0.475  Sum_probs=88.0

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHc--CCCCCccceEEEEEeCC----EEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK--LQHKNLVRLLGCCLEGQ----ELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~----~~~l  464 (495)
                      +.+.+.++||+|+||.||||++ +++.||||+++   .+..+.|++|-.+.+.  ++|+||+++++......    ++||
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp---~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywL  285 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFP---EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWL  285 (534)
T ss_pred             CchhhHHHhhcCccceeehhhc-cCceeEEEecC---HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeE
Confidence            3445667899999999999999 56999999998   5667889998888765  58999999999987655    8999


Q ss_pred             EEecCCCCCHHHHHhcCCCCHHHHHHHHHhC
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL  495 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~L  495 (495)
                      |+||+++|||.+||..+..+|...++|+.+|
T Consensus       286 Vt~fh~kGsL~dyL~~ntisw~~~cria~Sm  316 (534)
T KOG3653|consen  286 VTEFHPKGSLCDYLKANTISWNSLCRIAESM  316 (534)
T ss_pred             EeeeccCCcHHHHHHhccccHHHHHHHHHHH
Confidence            9999999999999999999999988888754

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-19  Score=183.71  Aligned_cols=116  Identities=53%  Similarity=0.851  Sum_probs=103.2

Q ss_pred             CCCCCChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEE
Q 011025          377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC  456 (495)
Q Consensus       377 ~~~~~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  456 (495)
                      ....|++.++..+|++|+..++||+|+||.||+|.+++|..||||++...+.+...+|.+|+.++++++|||||+|+|+|
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            56778999999999999999999999999999999999999999999865543145699999999999999999999999


Q ss_pred             EeCC-EEEEEEecCCCCCHHHHHhcCCC-CHHHHHHHH
Q 011025          457 LEGQ-ELLLIYEYMPNKSLDVHLFGLSL-SLSIKCYLL  492 (495)
Q Consensus       457 ~~~~-~~~lv~Ey~~~GsL~~~L~~~~~-~~~~~~~l~  492 (495)
                      .+.+ +.+||||||++|+|.++|+.... .++|..++.
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~k  178 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLK  178 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHH
Confidence            9988 59999999999999999998776 556665554

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=4.4e-17  Score=160.66  Aligned_cols=109  Identities=22%  Similarity=0.347  Sum_probs=86.4

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHc--CCCCCccceEEEEEe
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK--LQHKNLVRLLGCCLE  458 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~  458 (495)
                      .++-..+.....+.+.+.||+|+||+||+|.+ .|+.||||++...   +...|.+|.++...  |+|+||+.+++....
T Consensus       201 lplLVQRTiarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~sr---dE~SWfrEtEIYqTvmLRHENILgFIaaD~~  276 (513)
T KOG2052|consen  201 LPLLVQRTIARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSR---DERSWFRETEIYQTVMLRHENILGFIAADNK  276 (513)
T ss_pred             chhHhHHhhhheeEEEEEecCccccceeeccc-cCCceEEEEeccc---chhhhhhHHHHHHHHHhccchhhhhhhcccc
Confidence            33333344456778889999999999999998 7999999999743   34567788877765  599999999999865


Q ss_pred             C----CEEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          459 G----QELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       459 ~----~~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      +    .++|||+||+|+|||.|||...+........|+.
T Consensus       277 ~~gs~TQLwLvTdYHe~GSL~DyL~r~tv~~~~ml~Lal  315 (513)
T KOG2052|consen  277 DNGSWTQLWLVTDYHEHGSLYDYLNRNTVTTEGMLKLAL  315 (513)
T ss_pred             CCCceEEEEEeeecccCCcHHHHHhhccCCHHHHHHHHH
Confidence            4    3689999999999999999988776665555543

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.4e-16  Score=168.94  Aligned_cols=98  Identities=36%  Similarity=0.607  Sum_probs=84.9

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEE
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCC  456 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~  456 (495)
                      ......+.+....++||+|.||+||+|...      +...||||.|++.. .+..++|.+|+++++.|+|||||+|+|+|
T Consensus       479 ~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC  558 (774)
T KOG1026|consen  479 KVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVC  558 (774)
T ss_pred             ceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE
Confidence            334455667777889999999999999852      34579999998764 45789999999999999999999999999


Q ss_pred             EeCCEEEEEEecCCCCCHHHHHhcC
Q 011025          457 LEGQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       457 ~~~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++++++|+|||.+|||++||+.+
T Consensus       559 ~~~~P~~MvFEYm~~GDL~eFLra~  583 (774)
T KOG1026|consen  559 REGDPLCMVFEYMDHGDLHEFLRAR  583 (774)
T ss_pred             ccCCeeEEEEEecccccHHHHHHhh
Confidence            9999999999999999999999743

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.66  E-value=6.3e-17  Score=168.79  Aligned_cols=103  Identities=26%  Similarity=0.433  Sum_probs=89.1

Q ss_pred             CCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ..+..+++||.|.||+|++|.++    ....||||.|+.. +++...+|+.|..||++++||||++|.|+.....+.+||
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMII  708 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEE
Confidence            45677889999999999999964    2457999999966 456678999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      +|||+||+|+.||+.+..+..+.+...|
T Consensus       709 TEyMENGsLDsFLR~~DGqftviQLVgM  736 (996)
T KOG0196|consen  709 TEYMENGSLDSFLRQNDGQFTVIQLVGM  736 (996)
T ss_pred             hhhhhCCcHHHHHhhcCCceEeehHHHH
Confidence            9999999999999988876665554443

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.62  E-value=2.5e-15  Score=147.17  Aligned_cols=105  Identities=22%  Similarity=0.455  Sum_probs=90.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|.|+.||+|.. .++..||||.+.+.  ..+..+-...|+.++++++|||||+|+.+++.++..+|||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            35677788899999999999994 56899999999765  5666778899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      ||+.+|+|.+||+.+.  .+...+.+|.|+
T Consensus        89 EyC~gGDLs~yi~~~~~l~e~t~r~Fm~QL  118 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGRLPEATARHFMQQL  118 (429)
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999998774  333366666664

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.61  E-value=4.4e-16  Score=157.84  Aligned_cols=96  Identities=29%  Similarity=0.492  Sum_probs=86.2

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      +.+.+.+...++||+|.||+|...+...+..||||.++.... ....+|.+|+++|.+++||||++|+|+|..++++.+|
T Consensus       534 EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI  613 (807)
T KOG1094|consen  534 EFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMI  613 (807)
T ss_pred             hcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHH
Confidence            345666777899999999999999987789999999997654 4468999999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +|||++|+|..||..+.
T Consensus       614 ~EYmEnGDLnqFl~ahe  630 (807)
T KOG1094|consen  614 TEYMENGDLNQFLSAHE  630 (807)
T ss_pred             HHHHhcCcHHHHHHhcc
Confidence            99999999999998763

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.58  E-value=1.9e-15  Score=126.10  Aligned_cols=68  Identities=32%  Similarity=0.520  Sum_probs=55.4

Q ss_pred             ccceecccccccCcceeeEEEEeecCCChhhhHHHHHHHHHhhhhhcCCCCCcceEEEccccccccccccc
Q 011025          215 SFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRY  285 (495)
Q Consensus       215 ~~~~a~~~~~~~~~~~~y~l~QC~~dls~~~C~~CL~~~~~~~~~c~~~~g~~gg~v~~~~C~~r~e~~~f  285 (495)
                      ..+|++++. ..+..++|||+||++||+++||..||+.++..++.||+  ++.||+++.++|++||++++|
T Consensus        39 ~~~f~~~~~-~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~--~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   39 SKGFATGSA-GSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCP--GSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             -TEEEEEE---ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTT--SBSSEEEEESSEEEEEESS--
T ss_pred             ccCcEEeec-CCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCC--CCceEEEECCCEEEEEECCCC
Confidence            478999875 55778999999999999999999999999999999999  899999999999999999987

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-14  Score=149.33  Aligned_cols=108  Identities=31%  Similarity=0.426  Sum_probs=90.5

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecC--C---cEEEEEEccc---CChhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLAD--G---KAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~--g---~~VaVK~l~~---~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      +..-++....++||+|+||.||+|.+..  +   ..||||..+.   .......+|.+|.++|.+++|||||+|+|++..
T Consensus       153 el~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~  232 (474)
T KOG0194|consen  153 ELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVL  232 (474)
T ss_pred             EEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC
Confidence            3344566677899999999999999643  2   2389999985   345678899999999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      .++++||||++.||+|.+||+......++...+.|+
T Consensus       233 ~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~  268 (474)
T KOG0194|consen  233 EEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFC  268 (474)
T ss_pred             CCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHH
Confidence            999999999999999999999887666666666654

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.53  E-value=9.1e-15  Score=148.08  Aligned_cols=101  Identities=30%  Similarity=0.475  Sum_probs=84.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+.+...+.||+|.||.||.|.++....||||.++..+ ...++|.+|+.+|.+|+|+|||+++|+|..+++++||+|||
T Consensus       205 r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m  283 (468)
T KOG0197|consen  205 REELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYM  283 (468)
T ss_pred             HHHHHHHHHhcCCccceEEEEEEcCCCcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEec
Confidence            33456678899999999999999777799999998652 33478999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc-CCCCHHHHHHH
Q 011025          470 PNKSLDVHLFG-LSLSLSIKCYL  491 (495)
Q Consensus       470 ~~GsL~~~L~~-~~~~~~~~~~l  491 (495)
                      ++|+|.+||++ ........+.+
T Consensus       284 ~~GsLl~yLr~~~~~~l~~~~Ll  306 (468)
T KOG0197|consen  284 PKGSLLDYLRTREGGLLNLPQLL  306 (468)
T ss_pred             ccCcHHHHhhhcCCCccchHHHH
Confidence            99999999997 33333333333

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.52  E-value=1.2e-14  Score=159.42  Aligned_cols=104  Identities=37%  Similarity=0.584  Sum_probs=88.0

Q ss_pred             hcCCcccccccccCCceeEEeeeecC--C----cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLAD--G----KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~--g----~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      ..++.+..+.||+|.||.||+|.+.+  |    ..||||.+++. +.+...+|++|..+|++++|||||+++|+|...++
T Consensus       690 ~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~  769 (1025)
T KOG1095|consen  690 PRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGP  769 (1025)
T ss_pred             ChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCC
Confidence            45567788899999999999999643  3    24899999875 56778999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC------CCCHHHHHHHH
Q 011025          462 LLLIYEYMPNKSLDVHLFGL------SLSLSIKCYLL  492 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~------~~~~~~~~~l~  492 (495)
                      .+|++|||++|+|..||+..      ...+..+..+.
T Consensus       770 ~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~  806 (1025)
T KOG1095|consen  770 PLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLA  806 (1025)
T ss_pred             cEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHH
Confidence            99999999999999999987      44444444443

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.50  E-value=4.8e-14  Score=142.30  Aligned_cols=100  Identities=35%  Similarity=0.594  Sum_probs=82.1

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-EEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-ELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~Ey~~  470 (495)
                      ...+.||+|+||+||+|.+.+...||||++....  ....++|.+|+.+|.+++|||||+|+|+|..+. ...||||||+
T Consensus        44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~  123 (362)
T KOG0192|consen   44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMP  123 (362)
T ss_pred             hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCC
Confidence            3455699999999999999444449999998543  233679999999999999999999999999887 7999999999


Q ss_pred             CCCHHHHHhcC-CCCHHHHHHHHH
Q 011025          471 NKSLDVHLFGL-SLSLSIKCYLLY  493 (495)
Q Consensus       471 ~GsL~~~L~~~-~~~~~~~~~l~~  493 (495)
                      +|+|.++|+.. ....+++..+..
T Consensus       124 ~GsL~~~l~~~~~~~l~~~~~l~~  147 (362)
T KOG0192|consen  124 GGSLSVLLHKKRKRKLPLKVRLRI  147 (362)
T ss_pred             CCcHHHHHhhcccCCCCHHHHHHH
Confidence            99999999883 555555555544

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.41  E-value=1.3e-13  Score=140.79  Aligned_cols=100  Identities=29%  Similarity=0.435  Sum_probs=86.5

Q ss_pred             HHHhcCCcccccccccCCceeEEeeeecC-CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          386 ALEATNHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       386 l~~~t~~~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .+..+.++...++||-|.||.||.|.++. ...||||.|+... -..++|+.|..+|+.++|||+|+|+|+|....+.||
T Consensus       262 WEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYI  340 (1157)
T KOG4278|consen  262 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYI  340 (1157)
T ss_pred             hhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEE
Confidence            33345567778899999999999999754 6789999998543 346899999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      |+|||.+|+|.+||+.+.++.-
T Consensus       341 iTEfM~yGNLLdYLRecnr~ev  362 (1157)
T KOG4278|consen  341 ITEFMCYGNLLDYLRECNRSEV  362 (1157)
T ss_pred             EEecccCccHHHHHHHhchhhc
Confidence            9999999999999998776554

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.4e-12  Score=133.95  Aligned_cols=105  Identities=21%  Similarity=0.342  Sum_probs=92.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ..|...+.||+|+|..+|++.. ..|+.||+|++.+.   .+...+...+||++.+.|+|||||++++++.+.+..|||+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4688899999999999999994 88999999999864   3455778999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc--CCCCHHHHHHHHHhC
Q 011025          467 EYMPNKSLDVHLFG--LSLSLSIKCYLLYIL  495 (495)
Q Consensus       467 Ey~~~GsL~~~L~~--~~~~~~~~~~l~~~L  495 (495)
                      |++++|+|.++++.  .-.+.+.+.++.||+
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv  128 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIV  128 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            99999999999983  336667888888874

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.38  E-value=8e-14  Score=146.47  Aligned_cols=95  Identities=33%  Similarity=0.498  Sum_probs=80.7

Q ss_pred             ccccccccCCceeEEeee-ecCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          394 SDENKLGQGGFGPVYKGT-LADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~-~~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ...++||+|+||+||||. ++.|+    +||+|++... +.+...+|+.|+.+|++++||||++|+|+|..+. +.||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            446789999999999998 56554    7899999754 4566789999999999999999999999998765 889999


Q ss_pred             cCCCCCHHHHHhcCCCCHHHHH
Q 011025          468 YMPNKSLDVHLFGLSLSLSIKC  489 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~~~~  489 (495)
                      |||.|.|.+|++.++.....+.
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~  799 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQD  799 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHH
Confidence            9999999999998775554333

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.7e-12  Score=127.52  Aligned_cols=93  Identities=24%  Similarity=0.392  Sum_probs=78.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hh-----hHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQ-----GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~-----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .+.|-..+.||+|+||.|-+|. .++|+.||||++.+.-  ..     ......+|+++|.+|+|||||++++++..++.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            4566778899999999999998 5689999999997431  11     12235799999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .|||+||+++|+|.+++-.++
T Consensus       251 ~YmVlE~v~GGeLfd~vv~nk  271 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVANK  271 (475)
T ss_pred             eEEEEEEecCccHHHHHHhcc
Confidence            999999999999999997654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.35  E-value=5.5e-12  Score=145.06  Aligned_cols=86  Identities=31%  Similarity=0.518  Sum_probs=74.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ..+...++||+|+||.||+|.. .++..||||.++.....    ...|+..+++++|||||+++|++..++..++||||+
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCC
Confidence            4567788999999999999985 57899999999754322    234688899999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011025          470 PNKSLDVHLFG  480 (495)
Q Consensus       470 ~~GsL~~~L~~  480 (495)
                      ++|+|.++++.
T Consensus       766 ~~g~L~~~l~~  776 (968)
T PLN00113        766 EGKNLSEVLRN  776 (968)
T ss_pred             CCCcHHHHHhc
Confidence            99999999975

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.33  E-value=2.8e-12  Score=131.41  Aligned_cols=107  Identities=27%  Similarity=0.488  Sum_probs=89.2

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecC---C--cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLAD---G--KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~---g--~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      +..++.+...++||+|.||.||+|++.+   |  ..||||.-+.. .+.+.+.|+.|..+|++++||||++|+|+|. ..
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-e~  463 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-EQ  463 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-cc
Confidence            3344556677899999999999999632   3  36899999864 5667889999999999999999999999997 45


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      +.|||||.++.|.|+.||..++..+.....+.|+
T Consensus       464 P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~  497 (974)
T KOG4257|consen  464 PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYC  497 (974)
T ss_pred             ceeEEEecccchhHHHHHHhccccchHHHHHHHH
Confidence            7899999999999999999988888766665553

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=4.2e-12  Score=127.65  Aligned_cols=105  Identities=28%  Similarity=0.504  Sum_probs=87.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  464 (495)
                      .+.|...++||+|.||.|||+. ..+|+.||+|.++...  +....-..+||.+|++|+||||++|.+.....  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            3567778899999999999998 6789999999997543  33455678999999999999999999998876  68999


Q ss_pred             EEecCCCCCHHHHHhcCC---CCHHHHHHHHHhC
Q 011025          465 IYEYMPNKSLDVHLFGLS---LSLSIKCYLLYIL  495 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~---~~~~~~~~l~~~L  495 (495)
                      |+|||++ ||.-++..+.   ....++++|.|+|
T Consensus       196 VFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl  228 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLL  228 (560)
T ss_pred             EEecccc-hhhhhhcCCCcccChHHHHHHHHHHH
Confidence            9999965 7999998764   3444899998875

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.24  E-value=3.3e-11  Score=117.29  Aligned_cols=92  Identities=29%  Similarity=0.482  Sum_probs=79.3

Q ss_pred             CCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .+|...+.||+|+||.||+|...    .+..||+|.++.. +......|.+|+.++.+++||||+++.|++..++..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            45777889999999999999752    3568999999864 334456799999999999999999999999988999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      |||+++|+|.+++....
T Consensus        85 ~e~~~~~~L~~~l~~~~  101 (266)
T cd05064          85 TEYMSNGALDSFLRKHE  101 (266)
T ss_pred             EEeCCCCcHHHHHHhCC
Confidence            99999999999998653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.21  E-value=3e-11  Score=117.35  Aligned_cols=87  Identities=38%  Similarity=0.667  Sum_probs=74.1

Q ss_pred             cccccccCCceeEEeeeec-----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          395 DENKLGQGGFGPVYKGTLA-----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~-----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..+.||.|.||.||+|.+.     .+..|+||.++.. ..+..++|.+|+..+.+++||||++++|++...++.++|+||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4578999999999999975     2568999999654 344578999999999999999999999999988889999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.++|+..
T Consensus        83 ~~~g~L~~~L~~~   95 (259)
T PF07714_consen   83 CPGGSLDDYLKSK   95 (259)
T ss_dssp             -TTEBHHHHHHHT
T ss_pred             ccccccccccccc
Confidence            9999999999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.21  E-value=2.4e-11  Score=113.27  Aligned_cols=104  Identities=31%  Similarity=0.613  Sum_probs=86.3

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChh-h-HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQ-G-LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~-~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|.||.||+|. ..+|+.||||.++..... + ...-.+||..++.++|+||+.|+.++...+.+.||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            356677899999999999998 567999999999865332 2 2456899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCH---HHHHHHHHhC
Q 011025          468 YMPNKSLDVHLFGLSLSL---SIKCYLLYIL  495 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~---~~~~~l~~~L  495 (495)
                      ||+ .+|+..+++...-.   .++.|+.|+|
T Consensus        82 fm~-tdLe~vIkd~~i~l~pa~iK~y~~m~L  111 (318)
T KOG0659|consen   82 FMP-TDLEVVIKDKNIILSPADIKSYMLMTL  111 (318)
T ss_pred             ecc-ccHHHHhcccccccCHHHHHHHHHHHH
Confidence            995 68999999876443   3777777764

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.20  E-value=1.6e-11  Score=120.15  Aligned_cols=104  Identities=16%  Similarity=0.373  Sum_probs=88.6

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .+|...+.||+|.||+|-++. ...|+.||||.+++.   +.++.-...+||++|+.|+||||++++.++...+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            467778899999999999997 467999999999864   4566667899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      ||..+|.|.+|+..+.  .+.+.+.+.+||
T Consensus       133 EYaS~GeLYDYiSer~~LsErEaRhfFRQI  162 (668)
T KOG0611|consen  133 EYASGGELYDYISERGSLSEREARHFFRQI  162 (668)
T ss_pred             EecCCccHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999999997654  334466666665

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.19  E-value=6.3e-11  Score=120.19  Aligned_cols=106  Identities=21%  Similarity=0.326  Sum_probs=89.2

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..++|....+||+|+||+||.++ ...|...|+|+|++..-   ..+...+.|-.+|....+|+||+|.-.+...+.+||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            55789999999999999999998 45699999999987643   346678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          465 IYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      ||||+||||+..+|....  .+...+.+++++
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~  250 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAET  250 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHH
Confidence            999999999999997543  333356666654

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.19  E-value=8.7e-11  Score=120.82  Aligned_cols=103  Identities=19%  Similarity=0.361  Sum_probs=83.9

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .|...++||+|+||.||++.. .+++.+|+|.+....   ......+.+|+.++.+++|+||+++++.+...+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            577788999999999999984 568899999997532   2345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC-C-CHHHHHHHHHh
Q 011025          468 YMPNKSLDVHLFGLS-L-SLSIKCYLLYI  494 (495)
Q Consensus       468 y~~~GsL~~~L~~~~-~-~~~~~~~l~~~  494 (495)
                      |+++|+|.+++.... . ....+.++.++
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi  110 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAEL  110 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999997543 2 22244444443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.17  E-value=1e-10  Score=119.44  Aligned_cols=91  Identities=23%  Similarity=0.398  Sum_probs=79.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.||||+++...   ......+.+|+.++..++||||+++++.+..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            3678889999999999999984 468899999997432   234566889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~~g~L~~~l~~~   95 (364)
T cd05599          81 EYLPGGDMMTLLMKK   95 (364)
T ss_pred             CCCCCcHHHHHHHHc
Confidence            999999999999754

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.17  E-value=1.5e-10  Score=112.60  Aligned_cols=95  Identities=25%  Similarity=0.356  Sum_probs=84.3

Q ss_pred             HHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      +.+++++....+||+|+||.||+|.. .++..|++|.+........+.+.+|+.++..++|+||+++++++..++..+++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            45667777788999999999999984 46788999999876666677899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++++|.++++..
T Consensus        84 ~e~~~~~~L~~~l~~~   99 (268)
T cd06624          84 MEQVPGGSLSALLRSK   99 (268)
T ss_pred             EecCCCCCHHHHHHHh
Confidence            9999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.16  E-value=1.5e-10  Score=119.12  Aligned_cols=91  Identities=22%  Similarity=0.372  Sum_probs=79.1

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .|...++||+|+||.||++.. .+++.+|+|.+....   ......+.+|+.++.+++|+||+++++.+...+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            577889999999999999984 568899999997532   2345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.+++....
T Consensus        82 ~~~gg~L~~~l~~~~   96 (382)
T cd05625          82 YIPGGDMMSLLIRMG   96 (382)
T ss_pred             CCCCCcHHHHHHhcC
Confidence            999999999997543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.16  E-value=1.5e-10  Score=118.95  Aligned_cols=91  Identities=27%  Similarity=0.383  Sum_probs=78.9

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++. ..+++.||||.+.+.   ..+..+.+.+|+.++.+++||||+++++.+..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            357788999999999999998 457889999998643   2234567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~gg~L~~~l~~~   95 (377)
T cd05629          81 EFLPGGDLMTMLIKY   95 (377)
T ss_pred             eCCCCCcHHHHHHhc
Confidence            999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=3.1e-11  Score=111.02  Aligned_cols=91  Identities=29%  Similarity=0.460  Sum_probs=80.0

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|..++.||+|.||.||.|.. .++-.||+|++.+..   .+-..++.+|+++-+.|+||||+++.|++.+....+|+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            36788999999999999999985 457789999997542   22346789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||.++|+|...|.+
T Consensus       101 lEya~~gel~k~L~~  115 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQE  115 (281)
T ss_pred             EEecCCchHHHHHHh
Confidence            999999999999983

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.16  E-value=8.2e-11  Score=114.62  Aligned_cols=105  Identities=27%  Similarity=0.431  Sum_probs=88.9

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||+|+..+ .+.++..|+|.+++..   ........+|..++.+++||.||+++-.+.+.+.+|||
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            4678899999999999999998 4568899999998642   23466788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          466 YEYMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      +||+.||+|..+|..+. ...+ .+.|+++|
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi  134 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEI  134 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHH
Confidence            99999999999998543 3333 77777765

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.15  E-value=1e-10  Score=121.01  Aligned_cols=94  Identities=30%  Similarity=0.388  Sum_probs=79.8

Q ss_pred             HhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeC
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG  459 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  459 (495)
                      ...+.|...++||+|+||.||+|...      .+..||||.++... ....+.|.+|+.++.++. ||||++++|++...
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            34667888899999999999999841      23479999997543 344568999999999995 99999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +..+|||||+++|+|.++|+..
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHh
Confidence            9999999999999999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.15  E-value=1.4e-10  Score=113.67  Aligned_cols=85  Identities=26%  Similarity=0.421  Sum_probs=72.4

Q ss_pred             ccccCCceeEEeeeecC-------------------------CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccce
Q 011025          398 KLGQGGFGPVYKGTLAD-------------------------GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRL  452 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~~~-------------------------g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l  452 (495)
                      +||+|+||.||+|.+..                         ...|++|.+.........+|.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            59999999999997411                         13589999976544556789999999999999999999


Q ss_pred             EEEEEeCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          453 LGCCLEGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       453 ~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|++..+...++||||+++|+|..++....
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~  111 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEK  111 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcC
Confidence            999999999999999999999999997644

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.14  E-value=7e-11  Score=121.31  Aligned_cols=94  Identities=31%  Similarity=0.411  Sum_probs=79.8

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...++||+|+||.||++..      ..+..||||+++... ....+.+.+|+.++..+ +||||++++|.+..++
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~  112 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGG  112 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC
Confidence            345688889999999999999862      235689999997542 34456789999999999 8999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++||||+++|+|.++|+...
T Consensus       113 ~~~lv~E~~~~g~L~~~l~~~~  134 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLRRKR  134 (375)
T ss_pred             cceeeehhccCCcHHHHHHhcc
Confidence            9999999999999999997643

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.14  E-value=2.3e-10  Score=115.35  Aligned_cols=90  Identities=26%  Similarity=0.454  Sum_probs=78.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +|...++||+|+||.||++... +++.||+|+++...   ......+.+|+.++..++||||+++++.+..++..++|+|
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5778899999999999999954 58899999997532   2345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++|+|.+++...
T Consensus        82 ~~~g~~L~~~l~~~   95 (333)
T cd05600          82 YVPGGDFRTLLNNL   95 (333)
T ss_pred             CCCCCCHHHHHHHc
Confidence            99999999999753

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.14  E-value=1.9e-10  Score=111.16  Aligned_cols=90  Identities=28%  Similarity=0.446  Sum_probs=78.5

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +|...+.||+|+||.||++...++..+++|.+.... ....+|.+|+.++.+++||||+++++++...+..++||||+++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            466778899999999999998777889999987432 2346789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.++++...
T Consensus        84 ~~L~~~~~~~~   94 (256)
T cd05114          84 GCLLNYLRQRQ   94 (256)
T ss_pred             CcHHHHHHhCc
Confidence            99999997543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.14  E-value=3.2e-10  Score=114.45  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=80.9

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++... ++..+++|.+... .......+.+|+.++.+++|+||+++++++..++..++|+|
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            367888899999999999999854 5788999988754 33445679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.+++....
T Consensus        84 ~~~~~~L~~~l~~~~   98 (333)
T cd06650          84 HMDGGSLDQVLKKAG   98 (333)
T ss_pred             cCCCCcHHHHHHHcC
Confidence            999999999997543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.13  E-value=1.6e-10  Score=113.78  Aligned_cols=105  Identities=27%  Similarity=0.453  Sum_probs=85.7

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--EEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--ELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~E  467 (495)
                      .++...+.||+|.||.||.+... +|...|||.+...+....+.+.+|+.+|.+++|||||+..|.....+  .+.+.||
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            34666889999999999999954 48999999998653333677999999999999999999999855544  6899999


Q ss_pred             cCCCCCHHHHHhcCC---CCHHHHHHHHHhC
Q 011025          468 YMPNKSLDVHLFGLS---LSLSIKCYLLYIL  495 (495)
Q Consensus       468 y~~~GsL~~~L~~~~---~~~~~~~~l~~~L  495 (495)
                      |+++|||.+++.+..   .+..++.+.+|+|
T Consensus        97 y~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL  127 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGGKLPEPLVRRYTRQIL  127 (313)
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999999999998764   3344777777764

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.12  E-value=3.2e-10  Score=110.16  Aligned_cols=92  Identities=30%  Similarity=0.485  Sum_probs=79.5

Q ss_pred             CCcccccccccCCceeEEeeeecC----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|+..+.||+|+||.||+|....    ...|+||.++.. ......+|.+|+.++.+++||||+++.+.+...+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            467888999999999999998632    357999999754 334467899999999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus        84 ~e~~~~~~L~~~~~~~~  100 (266)
T cd05033          84 TEYMENGSLDKFLREND  100 (266)
T ss_pred             EEcCCCCCHHHHHHhcc
Confidence            99999999999997654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.12  E-value=3.1e-10  Score=116.48  Aligned_cols=91  Identities=21%  Similarity=0.348  Sum_probs=78.9

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +|...++||+|+||.||++.. ..++.+|||.+.+..   ......+.+|+.++.+++|+||+++++.+..++..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            577889999999999999984 468899999997432   2335678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.++|....
T Consensus        82 ~~~~g~L~~~i~~~~   96 (376)
T cd05598          82 YIPGGDMMSLLIRLG   96 (376)
T ss_pred             CCCCCcHHHHHHhcC
Confidence            999999999997644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.12  E-value=8.3e-11  Score=119.70  Aligned_cols=91  Identities=25%  Similarity=0.439  Sum_probs=79.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...+.||+|.||.||||.. .+.+.||+|.+.+.  ..++.+...+|++++++++|||||.++..+....++|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            4567778899999999999984 46889999999754  34567789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+.+ +|+.+|.+..
T Consensus        82 ~a~g-~L~~il~~d~   95 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG   95 (808)
T ss_pred             hhhh-hHHHHHHhcc
Confidence            9966 9999997644

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.12  E-value=2.6e-10  Score=113.23  Aligned_cols=90  Identities=33%  Similarity=0.571  Sum_probs=77.3

Q ss_pred             CCcccccccccCCceeEEeeeecC-----------------CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccce
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-----------------GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRL  452 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-----------------g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l  452 (495)
                      ++|...++||+|+||.||++...+                 +..||+|.+.... .....+|.+|+.++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            467778899999999999997432                 3469999997543 3446689999999999999999999


Q ss_pred             EEEEEeCCEEEEEEecCCCCCHHHHHhc
Q 011025          453 LGCCLEGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       453 ~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ++++...+..++|+||+++|+|.++|..
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~  112 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSS  112 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHh
Confidence            9999998899999999999999999965

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.12  E-value=1.6e-10  Score=111.72  Aligned_cols=93  Identities=32%  Similarity=0.510  Sum_probs=83.7

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +..+|...++||+|+||.||+|...++..+++|.+.........++.+|+.++..++|+||+++++.+...+..++|+||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEee
Confidence            34567888999999999999999877899999999876665677899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.++++..
T Consensus        84 ~~~~~L~~~~~~~   96 (261)
T cd05148          84 MEKGSLLAFLRSP   96 (261)
T ss_pred             cccCCHHHHHhcC
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.12  E-value=4.5e-10  Score=113.21  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=81.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++.. .++..+|+|.+... .......+.+|+.++.+++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            35788889999999999999985 46888999999754 33445679999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.+++....
T Consensus        84 ~~~~~~L~~~l~~~~   98 (331)
T cd06649          84 HMDGGSLDQVLKEAK   98 (331)
T ss_pred             cCCCCcHHHHHHHcC
Confidence            999999999997643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PHA02988 hypothetical protein; Provisional

Probab=99.12  E-value=3.4e-10  Score=111.52  Aligned_cols=86  Identities=17%  Similarity=0.325  Sum_probs=73.8

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChhh---HHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEEEEEec
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQG---LQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELLLIYEY  468 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~---~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~Ey  468 (495)
                      ...||+|++|.||+|.+ +|+.||||.++......   .+.|.+|+.++.+++||||++++|++..    ....++|+||
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            35799999999999998 78999999997543222   5778899999999999999999999876    3467999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++|+|.+++....
T Consensus       104 ~~~g~L~~~l~~~~  117 (283)
T PHA02988        104 CTRGYLREVLDKEK  117 (283)
T ss_pred             CCCCcHHHHHhhCC
Confidence            99999999997643

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.11  E-value=4e-10  Score=110.62  Aligned_cols=92  Identities=33%  Similarity=0.600  Sum_probs=78.7

Q ss_pred             CCcccccccccCCceeEEeeeec-----CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-----DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-----~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  463 (495)
                      .+|...+.||+|+||.||++..+     ++..|++|.+........+.|.+|+.++.+++||||+++.+++...  ...+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            35677889999999999998742     4789999999877666678899999999999999999999987543  4679


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        84 lv~e~~~~~~L~~~l~~~~  102 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHR  102 (284)
T ss_pred             EEEEecCCCCHHHHHHhcC
Confidence            9999999999999997643

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.11  E-value=3e-10  Score=114.39  Aligned_cols=92  Identities=22%  Similarity=0.365  Sum_probs=79.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+++.||+|.++...   ....+.+.+|+.++.+++||||+++++.+..++..++|+
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            4677889999999999999985 468899999997432   234567899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        98 e~~~~~~L~~~l~~~~  113 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG  113 (329)
T ss_pred             cCCCCChHHHHHHHcC
Confidence            9999999999997643

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.11  E-value=1.2e-10  Score=117.67  Aligned_cols=94  Identities=24%  Similarity=0.434  Sum_probs=77.9

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC-
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG-  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-  459 (495)
                      +.++|...++||+|+||.||++..      ..+..||||.++... ......+.+|+.++..+ +||||++++|++... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            456788889999999999999973      235689999997543 34456799999999999 899999999988764 


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ...+++|||+++|+|.++|....
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~  107 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKR  107 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcc
Confidence            45799999999999999998643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.10  E-value=6.6e-11  Score=112.20  Aligned_cols=104  Identities=25%  Similarity=0.383  Sum_probs=82.8

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .|...-++|+|+||.|||+. ...|+.||||.+....  +.-.+--++||+++++|+|+|+|.|+.++.....++||+||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            35556789999999999999 4569999999997543  22344568999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC--CCHHHHHHHHHhC
Q 011025          469 MPNKSLDVHLFGLS--LSLSIKCYLLYIL  495 (495)
Q Consensus       469 ~~~GsL~~~L~~~~--~~~~~~~~l~~~L  495 (495)
                      +++.-|+++=+-+.  ....++.++.|+|
T Consensus        83 ~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l  111 (396)
T KOG0593|consen   83 CDHTVLHELERYPNGVPSELVKKYLYQLL  111 (396)
T ss_pred             cchHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            99888887665433  2333666666653

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.10  E-value=2.1e-10  Score=113.40  Aligned_cols=92  Identities=21%  Similarity=0.253  Sum_probs=78.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.||+|.+....   .+..+.+.+|+.++.+++||||+++.+.....+..++|+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            3577789999999999999985 468899999996432   234567899999999999999999999988888999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        81 e~~~~~~L~~~~~~~~   96 (291)
T cd05612          81 EYVPGGELFSYLRNSG   96 (291)
T ss_pred             eCCCCCCHHHHHHHcC
Confidence            9999999999997543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.10  E-value=3.6e-10  Score=115.46  Aligned_cols=91  Identities=20%  Similarity=0.354  Sum_probs=78.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.+|+|++++..   ......+.+|+.++.+++|+||+++++.+......++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            3677889999999999999984 468899999997532   233467889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~gg~L~~~l~~~   95 (363)
T cd05628          81 EFLPGGDMMTLLMKK   95 (363)
T ss_pred             cCCCCCcHHHHHHhc
Confidence            999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.10  E-value=6.1e-10  Score=106.99  Aligned_cols=86  Identities=30%  Similarity=0.541  Sum_probs=75.8

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHH
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLD  475 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  475 (495)
                      ++||+|+||.||+|...++..+++|.+.... ......|.+|+.++.+++||||+++.+.+...+..++|+||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            3689999999999998788999999987654 334557999999999999999999999999888999999999999999


Q ss_pred             HHHhcCC
Q 011025          476 VHLFGLS  482 (495)
Q Consensus       476 ~~L~~~~  482 (495)
                      +++....
T Consensus        81 ~~~~~~~   87 (250)
T cd05085          81 SFLRKKK   87 (250)
T ss_pred             HHHHhcC
Confidence            9997543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.09  E-value=2.3e-10  Score=118.36  Aligned_cols=95  Identities=29%  Similarity=0.436  Sum_probs=79.8

Q ss_pred             HhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeC
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG  459 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  459 (495)
                      .+.+++...++||+|+||.||++...      .+..||||.++... ....+.+.+|+.++.++. ||||++++|.+...
T Consensus        34 ~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~  113 (401)
T cd05107          34 MPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG  113 (401)
T ss_pred             ecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC
Confidence            34456777899999999999999842      34689999997542 333457999999999997 99999999999998


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +..++|+||+++|+|.++|+...
T Consensus       114 ~~~~iv~E~~~~g~L~~~l~~~~  136 (401)
T cd05107         114 GPIYIITEYCRYGDLVDYLHRNK  136 (401)
T ss_pred             CCcEEEEeccCCCcHHHHHHhcc
Confidence            89999999999999999998654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.09  E-value=3.6e-10  Score=110.68  Aligned_cols=92  Identities=26%  Similarity=0.462  Sum_probs=82.3

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .++..+++|.+........+.|.+|+.++.+++||||+++++.+..+...++|+||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            45677888999999999999985 46889999999866666677899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        84 ~~~~~L~~~~~~~   96 (280)
T cd06611          84 CDGGALDSIMLEL   96 (280)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.09  E-value=6.4e-10  Score=108.04  Aligned_cols=91  Identities=24%  Similarity=0.407  Sum_probs=80.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||+|.. .+++.|++|.+..........+.+|+.++.+++||||+++.+.+...+..++|+||+
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            4677889999999999999994 578899999997554455567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.++++..
T Consensus        89 ~~~~L~~~~~~~  100 (267)
T cd06646          89 GGGSLQDIYHVT  100 (267)
T ss_pred             CCCcHHHHHHhc
Confidence            999999998643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.09  E-value=7.1e-10  Score=110.49  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .++..+++|.+... ......++.+|+.++.+++||||+++++.+..++..++|+||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            3577889999999999999984 46788999988754 333456789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        81 ~~~~~L~~~l~~~   93 (308)
T cd06615          81 MDGGSLDQVLKKA   93 (308)
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.08  E-value=5e-10  Score=113.38  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=78.9

Q ss_pred             cCCcccccccccCCceeEEeeeecC--CcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLAD--GKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~--g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||++...+  +..||+|.+...   .....+.+.+|+.++..++||||+++++++...+..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            3467888999999999999998533  368999998643   22345678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      ||||+++|+|.+++....
T Consensus       109 v~Ey~~~g~L~~~i~~~~  126 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK  126 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC
Confidence            999999999999997543

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.08  E-value=5.4e-10  Score=114.50  Aligned_cols=99  Identities=21%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..++|...++||+|+||.||++.. .+++.+|+|.+.+.   .......+.+|+.++..++||||+++++.+..++..++
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            446788889999999999999985 45889999998642   22334568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCHHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      |+||+++|+|.+++........+
T Consensus       121 v~Ey~~gg~L~~~l~~~~~~~~~  143 (370)
T cd05621         121 VMEYMPGGDLVNLMSNYDVPEKW  143 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHH
Confidence            99999999999999876555443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.07  E-value=5.2e-10  Score=108.86  Aligned_cols=91  Identities=27%  Similarity=0.490  Sum_probs=78.2

Q ss_pred             CcccccccccCCceeEEeeeecC-C---cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLAD-G---KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~-g---~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++...+.||+|+||.||+|.... +   ..|+||.+... ......+|.+|+.++.+++||||+++.+.+..++..++|+
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            45678899999999999998532 3   36999999754 4455678999999999999999999999998889999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        85 e~~~~~~L~~~l~~~~  100 (269)
T cd05065          85 EFMENGALDSFLRQND  100 (269)
T ss_pred             ecCCCCcHHHHHhhCC
Confidence            9999999999997654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.07  E-value=8.3e-11  Score=122.21  Aligned_cols=88  Identities=36%  Similarity=0.520  Sum_probs=76.8

Q ss_pred             CcccccccccCCceeEEeeeec--CCc--EEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA--DGK--AIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~--~g~--~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .+.+.++||+|.||.|++|.+.  +|.  .||||.++.... ....+|++|+.+|-+|+|+|+++|+|+..+ .+.++|+
T Consensus       111 ~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~  189 (1039)
T KOG0199|consen  111 QIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVF  189 (1039)
T ss_pred             HHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHh
Confidence            3456789999999999999864  344  689999986643 367899999999999999999999999987 7789999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      |+.+.|||.+.|++
T Consensus       190 ELaplGSLldrLrk  203 (1039)
T KOG0199|consen  190 ELAPLGSLLDRLRK  203 (1039)
T ss_pred             hhcccchHHHHHhh
Confidence            99999999999998

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=1.4e-11  Score=115.72  Aligned_cols=89  Identities=29%  Similarity=0.500  Sum_probs=76.4

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEccc--CChhhHHHHHHHHHHHHcCCCCCccceEEE-EEeCCE-EEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNLVRLLGC-CLEGQE-LLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~-~~~~~~-~~lv  465 (495)
                      .+|...++||+|.||+|||+. +.+|..||.|.+.-  .+.+..+....|+.++++|+|||||+..+. ..++.+ +.||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            346677899999999999998 77999999999873  345667889999999999999999999984 444555 7999


Q ss_pred             EecCCCCCHHHHHh
Q 011025          466 YEYMPNKSLDVHLF  479 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~  479 (495)
                      |||+..|+|...++
T Consensus        99 mE~c~~GDLsqmIk  112 (375)
T KOG0591|consen   99 MELCDAGDLSQMIK  112 (375)
T ss_pred             HHhhcccCHHHHHH
Confidence            99999999999986

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.07  E-value=4.3e-10  Score=115.28  Aligned_cols=100  Identities=21%  Similarity=0.275  Sum_probs=83.5

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..++|...++||+|+||.||++.. .+++.+|+|.+++.   .......+.+|+.++..++||||+++++++..+...++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            345788889999999999999985 46889999999643   12334568899999999999999999999998999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCHHHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~~~  488 (495)
                      |+||+++|+|.+++........+.
T Consensus       121 v~Ey~~gg~L~~~l~~~~l~~~~~  144 (370)
T cd05596         121 VMEYMPGGDLVNLMSNYDIPEKWA  144 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHH
Confidence            999999999999998765555443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.07  E-value=6.6e-10  Score=108.10  Aligned_cols=92  Identities=27%  Similarity=0.480  Sum_probs=78.0

Q ss_pred             CCcccccccccCCceeEEeeeec-C---CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-D---GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~---g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .+|...+.||+|+||.||+|... +   +..+++|.++... ....+.|.+|+.++.+++||||+++.+++..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            45677889999999999999842 2   3379999997542 34467899999999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus        84 ~e~~~~~~L~~~~~~~~  100 (267)
T cd05066          84 TEYMENGSLDAFLRKHD  100 (267)
T ss_pred             EEcCCCCCHHHHHHhcC
Confidence            99999999999997654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.07  E-value=7.3e-10  Score=106.68  Aligned_cols=86  Identities=29%  Similarity=0.544  Sum_probs=75.0

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ++||+|+||.||++.. .+++.+++|.+... ..+....|.+|+.++.+++||||+++++++......++|+||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            4699999999999985 46889999988654 334467799999999999999999999999998999999999999999


Q ss_pred             HHHHhcCC
Q 011025          475 DVHLFGLS  482 (495)
Q Consensus       475 ~~~L~~~~  482 (495)
                      .+++....
T Consensus        81 ~~~~~~~~   88 (252)
T cd05084          81 LTFLRTEG   88 (252)
T ss_pred             HHHHHhCC
Confidence            99997543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.07  E-value=4.7e-10  Score=108.53  Aligned_cols=90  Identities=30%  Similarity=0.458  Sum_probs=78.0

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +|...+.||+|+||.||++...++..+|+|.++... ...++|.+|+.++.+++||||+++++++...+..++++||+++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            456678899999999999987667789999987543 2346799999999999999999999999888889999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++....
T Consensus        84 ~~l~~~i~~~~   94 (256)
T cd05113          84 GCLLNYLREHG   94 (256)
T ss_pred             CcHHHHHHhcC
Confidence            99999997543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.07  E-value=5.7e-10  Score=108.02  Aligned_cols=91  Identities=34%  Similarity=0.481  Sum_probs=80.2

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...++||+|+||.||+|...++..|++|.+.... ...+.+.+|+.++.+++|+||+++.+.+...+..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecC
Confidence            35678889999999999999998788899999987543 34578999999999999999999999998888899999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.++++..
T Consensus        84 ~~~~L~~~l~~~   95 (261)
T cd05072          84 AKGSLLDFLKSD   95 (261)
T ss_pred             CCCcHHHHHHHh
Confidence            999999999753

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.07  E-value=5.4e-10  Score=108.25  Aligned_cols=92  Identities=28%  Similarity=0.444  Sum_probs=80.9

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...++||+|+||.||++...+++.|++|.++... ...++|.+|+.++.+++|+||+++.+++...+..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence            45678889999999999999998778899999997543 33567999999999999999999999999888999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++++|.+++....
T Consensus        84 ~~~~L~~~~~~~~   96 (261)
T cd05068          84 KYGSLLEYLQGGA   96 (261)
T ss_pred             cCCcHHHHHhccC
Confidence            9999999997643

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.06  E-value=7.4e-10  Score=111.67  Aligned_cols=90  Identities=20%  Similarity=0.292  Sum_probs=78.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+++.||+|.+.+.   .....+.|.+|+.++..++|+||+++.+++..++..++|+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            3577889999999999999985 46889999999742   2233566889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus        81 e~~~g~~L~~~l~~   94 (331)
T cd05597          81 DYYVGGDLLTLLSK   94 (331)
T ss_pred             ecCCCCcHHHHHHH
Confidence            99999999999965

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.06  E-value=8.1e-10  Score=110.96  Aligned_cols=86  Identities=24%  Similarity=0.279  Sum_probs=74.1

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      +.||+|+||.||++.. .+|..||+|.++..   .......+.+|+.++..++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999984 46899999999753   2334567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC
Q 011025          473 SLDVHLFGLS  482 (495)
Q Consensus       473 sL~~~L~~~~  482 (495)
                      +|.+++....
T Consensus        81 ~L~~~l~~~~   90 (323)
T cd05595          81 ELFFHLSRER   90 (323)
T ss_pred             cHHHHHHHcC
Confidence            9999887543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.06  E-value=8.7e-10  Score=110.71  Aligned_cols=85  Identities=26%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      ++||+|+||.||++.. .+|+.+|+|.++..   .......+.+|+.++.+++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999984 56889999999753   2334567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcC
Q 011025          473 SLDVHLFGL  481 (495)
Q Consensus       473 sL~~~L~~~  481 (495)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (323)
T cd05571          81 ELFFHLSRE   89 (323)
T ss_pred             cHHHHHHHc
Confidence            999998754

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.06  E-value=8.4e-10  Score=107.70  Aligned_cols=89  Identities=26%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-EEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-ELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~Ey  468 (495)
                      ++...+.||+|..|.|||+.. ++++..|+|.+... .+...++..+|++++.+.+||+||+++|++..+. +..|+|||
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            344567899999999999994 56888999999543 3455788999999999999999999999999988 59999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      |.+|||++++..
T Consensus       160 MDgGSLd~~~k~  171 (364)
T KOG0581|consen  160 MDGGSLDDILKR  171 (364)
T ss_pred             cCCCCHHHHHhh
Confidence            999999999984

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.05  E-value=8.4e-10  Score=111.25  Aligned_cols=91  Identities=20%  Similarity=0.249  Sum_probs=78.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.+|+|.+.+.   .......+.+|+.++..++|+||+++.+++...+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4677889999999999999985 46789999999743   1233456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 Ey~~gg~L~~~l~~~   95 (331)
T cd05624          81 DYYVGGDLLTLLSKF   95 (331)
T ss_pred             eCCCCCcHHHHHHHh
Confidence            999999999999763

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.05  E-value=1.5e-09  Score=105.40  Aligned_cols=89  Identities=30%  Similarity=0.636  Sum_probs=77.3

Q ss_pred             cccccccccCCceeEEeeeecCCcEEEEEEcccCC------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      |...+.||+|+||.||+|...+++.+|||.++...      ......+.+|+.++.+++|+||+++++++......++++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            55678899999999999987788999999986432      122456899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        82 e~~~~~~L~~~l~~~   96 (265)
T cd06631          82 EFVPGGSISSILNRF   96 (265)
T ss_pred             ecCCCCcHHHHHHhc
Confidence            999999999999763

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.05  E-value=1.1e-10  Score=121.99  Aligned_cols=90  Identities=29%  Similarity=0.476  Sum_probs=77.5

Q ss_pred             ccccccccCCceeEEeee-ecCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------CEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------QELLLI  465 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~~lv  465 (495)
                      ...+.||+|+||.||+|. -..|+.||||.+++.+ ....+.+.+|++++++|+|+|||++.++-.+.      ....++
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            345689999999999999 6679999999998653 45678899999999999999999999886543      357999


Q ss_pred             EecCCCCCHHHHHhcCCC
Q 011025          466 YEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~  483 (495)
                      |||+.+|||+..|.++.+
T Consensus        96 mEyC~gGsL~~~L~~PEN  113 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPEN  113 (732)
T ss_pred             EeecCCCcHHHHhcCccc
Confidence            999999999999998764

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.05  E-value=8.9e-10  Score=112.38  Aligned_cols=91  Identities=20%  Similarity=0.371  Sum_probs=78.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+++.||+|.++...   ......+.+|+.++..++|+||+++++.+...+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            3577889999999999999985 468899999997432   234567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~gg~L~~~l~~~   95 (360)
T cd05627          81 EFLPGGDMMTLLMKK   95 (360)
T ss_pred             eCCCCccHHHHHHhc
Confidence            999999999999754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.04  E-value=9.8e-10  Score=106.27  Aligned_cols=93  Identities=32%  Similarity=0.498  Sum_probs=81.5

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..++|...++||+|+||.||++...++..|+||.+.... ...+++.+|+.++.+++|+||+++++.+......++++||
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY   82 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence            356788889999999999999998777889999997543 3356799999999999999999999999888889999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++++|.+++....
T Consensus        83 ~~~~~L~~~i~~~~   96 (261)
T cd05034          83 MSKGSLLDFLKSGE   96 (261)
T ss_pred             cCCCCHHHHHhccc
Confidence            99999999997643

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.04  E-value=2.5e-10  Score=117.30  Aligned_cols=100  Identities=28%  Similarity=0.457  Sum_probs=84.6

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      ++.++..+.+...+.||+|+||+||+|.+  -..||||.+...  +++..++|.+|+..+++-+|.||+=+.|+|..++.
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~w--hGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~  462 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRW--HGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL  462 (678)
T ss_pred             cccccCHHHhhccceeccccccceeeccc--ccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce
Confidence            44444555667788999999999999997  347999999854  45668899999999999999999999999997766


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                       .||+-++++.+|+.+||..+.+.+
T Consensus       463 -AIiTqwCeGsSLY~hlHv~etkfd  486 (678)
T KOG0193|consen  463 -AIITQWCEGSSLYTHLHVQETKFD  486 (678)
T ss_pred             -eeeehhccCchhhhhccchhhhhh
Confidence             999999999999999998765544

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=4.2e-10  Score=116.72  Aligned_cols=104  Identities=23%  Similarity=0.313  Sum_probs=88.7

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      -+++++.||+|+-|.|..|+ ..+|+.+|||++.+...   .......+||.+|+-+.|||+++|+.++....++|||+|
T Consensus        13 pwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlE   92 (786)
T KOG0588|consen   13 PWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLE   92 (786)
T ss_pred             ceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEE
Confidence            45678899999999999998 56899999999986532   224567899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc--CCCCHHHHHHHHHhC
Q 011025          468 YMPNKSLDVHLFG--LSLSLSIKCYLLYIL  495 (495)
Q Consensus       468 y~~~GsL~~~L~~--~~~~~~~~~~l~~~L  495 (495)
                      |+++|.|.+||..  ...+.+...++.|||
T Consensus        93 yv~gGELFdylv~kG~l~e~eaa~ff~QIi  122 (786)
T KOG0588|consen   93 YVPGGELFDYLVRKGPLPEREAAHFFRQIL  122 (786)
T ss_pred             ecCCchhHHHHHhhCCCCCHHHHHHHHHHH
Confidence            9999999999954  446666788888774

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.04  E-value=9.4e-10  Score=106.91  Aligned_cols=93  Identities=31%  Similarity=0.569  Sum_probs=79.4

Q ss_pred             cCCcccccccccCCceeEEeeeec-CC---cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DG---KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g---~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|+..++||+|+||.||+|... ++   ..+++|.++.. .....+++.+|+.++.+++|+||+++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            346778899999999999999864 23   37999999754 34456789999999999999999999999998899999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      |+||+++++|.+++..+.
T Consensus        84 v~e~~~~~~L~~~~~~~~  101 (268)
T cd05063          84 ITEYMENGALDKYLRDHD  101 (268)
T ss_pred             EEEcCCCCCHHHHHHhcC
Confidence            999999999999997654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.04  E-value=4.9e-10  Score=113.13  Aligned_cols=100  Identities=26%  Similarity=0.426  Sum_probs=81.3

Q ss_pred             ccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      .++||+|.||.||-|+ .++|+.||||.+.+.  ..+..+.+.+|+.++.+++||.||.|...+..++..++|||-+.+-
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            4689999999999998 568999999999754  4455688999999999999999999999999999999999999666


Q ss_pred             CHHHHHhcCCCCHH---HHHHHHHhC
Q 011025          473 SLDVHLFGLSLSLS---IKCYLLYIL  495 (495)
Q Consensus       473 sL~~~L~~~~~~~~---~~~~l~~~L  495 (495)
                      -|+..|..++.+++   .+..+.|||
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL  674 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQIL  674 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHH
Confidence            56666665554444   455555553

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.04  E-value=1.8e-09  Score=107.08  Aligned_cols=95  Identities=25%  Similarity=0.412  Sum_probs=83.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+|...++||+|+||.||++.. .+++.|++|.+........+.+.+|+.++..++|+||+++++.+..++..++|+||+
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            5677889999999999999984 578999999997655555677899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCH
Q 011025          470 PNKSLDVHLFGLSLSL  485 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~  485 (495)
                      ++++|.+++.......
T Consensus        99 ~~~~L~~~~~~~~~~~  114 (297)
T cd06656          99 AGGSLTDVVTETCMDE  114 (297)
T ss_pred             CCCCHHHHHHhCCCCH
Confidence            9999999997654443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.04  E-value=1.1e-09  Score=109.37  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=72.6

Q ss_pred             cccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++.. .+++.||+|.+++.   +......+.+|+.++.+++||||+++.+.+...+..++|+||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            69999999999985 45889999999743   234456788999999999999999999999989999999999999999


Q ss_pred             HHHHhcC
Q 011025          475 DVHLFGL  481 (495)
Q Consensus       475 ~~~L~~~  481 (495)
                      .+++...
T Consensus        81 ~~~l~~~   87 (312)
T cd05585          81 FHHLQRE   87 (312)
T ss_pred             HHHHHhc
Confidence            9999654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.04  E-value=1.1e-09  Score=112.39  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          386 ALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       386 l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      +....++|...+.||+|+||.||++.. .+++.+|+|.+.+.   .......+.+|+.++..++||||+++.+.+..+..
T Consensus        38 ~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~  117 (371)
T cd05622          38 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRY  117 (371)
T ss_pred             cCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCE
Confidence            344557889999999999999999985 46889999998642   22334568899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHHH
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      .++|+||+++|+|.+++........+
T Consensus       118 ~~lv~Ey~~gg~L~~~~~~~~~~~~~  143 (371)
T cd05622         118 LYMVMEYMPGGDLVNLMSNYDVPEKW  143 (371)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHH
Confidence            99999999999999999876555443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.03  E-value=1.3e-09  Score=109.69  Aligned_cols=86  Identities=26%  Similarity=0.292  Sum_probs=74.5

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      +.||+|+||.||++.. .+|+.+|+|.+.+.   .......+.+|+.++..++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999984 56899999999753   2344567899999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC
Q 011025          473 SLDVHLFGLS  482 (495)
Q Consensus       473 sL~~~L~~~~  482 (495)
                      +|.+++....
T Consensus        81 ~L~~~l~~~~   90 (328)
T cd05593          81 ELFFHLSRER   90 (328)
T ss_pred             CHHHHHHhcC
Confidence            9999987543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.03  E-value=1.2e-09  Score=111.20  Aligned_cols=106  Identities=21%  Similarity=0.358  Sum_probs=85.5

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC----Ch-hhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT----SG-QGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~----~~-~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~  461 (495)
                      ..+.|...+.||+|.||.|+.|. ...++.||+|++.+.    .. ...+...+|+.++..++ ||||+++..+......
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            45678889999999999999997 456899999987653    11 22445668999999998 9999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC-C-CCHHHHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGL-S-LSLSIKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~-~-~~~~~~~~l~~~  494 (495)
                      .++||||+.+|+|.+++.+. + .+.+.+.+++|+
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Ql  129 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQL  129 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHH
Confidence            99999999999999999872 2 333455666654

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.03  E-value=1e-09  Score=110.50  Aligned_cols=91  Identities=22%  Similarity=0.311  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.+|+|.++...   .+..+.+.+|+.++..++|+||+++.+.+...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            3577889999999999999984 468899999997532   234567889999999999999999999998889999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 e~~~~~~L~~~l~~~   95 (330)
T cd05601          81 EYQPGGDLLSLLNRY   95 (330)
T ss_pred             CCCCCCCHHHHHHHh
Confidence            999999999999765

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.03  E-value=1.5e-09  Score=107.11  Aligned_cols=91  Identities=27%  Similarity=0.509  Sum_probs=81.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +.|...++||+|+||.||+|.. .++..+++|.+...+....+.+.+|+.++..++|+||+++.+.+..++..++||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            4567788999999999999985 458899999998777677788999999999999999999999999899999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++++|..++...
T Consensus        92 ~~~~l~~~~~~~  103 (292)
T cd06644          92 PGGAVDAIMLEL  103 (292)
T ss_pred             CCCcHHHHHHhh
Confidence            999999988643

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.03  E-value=2e-09  Score=106.65  Aligned_cols=92  Identities=25%  Similarity=0.442  Sum_probs=81.2

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+|...++||+|+||.||+|. ..+++.|++|.+........+.+.+|+.++..++|+||+++++.+..+...++|+||+
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeeccc
Confidence            467778899999999999998 4568899999998655555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++|+|.+++....
T Consensus       100 ~~~~L~~~~~~~~  112 (296)
T cd06654         100 AGGSLTDVVTETC  112 (296)
T ss_pred             CCCCHHHHHHhcC
Confidence            9999999997654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.03  E-value=1.2e-09  Score=105.31  Aligned_cols=90  Identities=36%  Similarity=0.541  Sum_probs=79.7

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...+.||+|+||.||++.. .|+.|++|.++.... ..+++.+|+.++.+++|+||+++++.+...+..++|+||++
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             hhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecC
Confidence            4567788999999999999986 488999999986544 56789999999999999999999999988889999999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +++|.+++....
T Consensus        84 ~~~L~~~~~~~~   95 (256)
T cd05039          84 KGSLVDYLRSRG   95 (256)
T ss_pred             CCcHHHHHHhcC
Confidence            999999997543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.03  E-value=1.2e-09  Score=107.61  Aligned_cols=88  Identities=28%  Similarity=0.443  Sum_probs=75.6

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||++.. .+++.||||.+....   ......+.+|+.++..++||||+++.+.+..++..++||||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            56678999999999999984 468899999997532   22345678999999999999999999999888899999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus        82 ~~~~~L~~~~~~   93 (285)
T cd05605          82 MNGGDLKFHIYN   93 (285)
T ss_pred             cCCCcHHHHHHh
Confidence            999999998864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.02  E-value=1.4e-09  Score=105.95  Aligned_cols=84  Identities=32%  Similarity=0.464  Sum_probs=71.9

Q ss_pred             cccccCCceeEEeeeecC---CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          397 NKLGQGGFGPVYKGTLAD---GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~---g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      +.||+|+||.||+|...+   +..+++|.++... ......|.+|+.++.+++||||++++|.+......++|+||+++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            358999999999998533   4578999987543 334457999999999999999999999998888899999999999


Q ss_pred             CHHHHHhc
Q 011025          473 SLDVHLFG  480 (495)
Q Consensus       473 sL~~~L~~  480 (495)
                      +|.++|+.
T Consensus        81 ~L~~~l~~   88 (269)
T cd05087          81 DLKGYLRS   88 (269)
T ss_pred             cHHHHHHH
Confidence            99999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.02  E-value=1.3e-09  Score=107.31  Aligned_cols=88  Identities=28%  Similarity=0.439  Sum_probs=75.9

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||++.. .+|+.||||.+....   .+....+.+|+.++.+++|+||+++.+.+...+..++|+||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            56678999999999999984 578999999987432   23345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus        82 ~~~g~L~~~~~~   93 (285)
T cd05631          82 MNGGDLKFHIYN   93 (285)
T ss_pred             cCCCcHHHHHHh
Confidence            999999988864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-09  Score=111.75  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=86.2

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~  463 (495)
                      ..+.|...++||+|.||.||+++-+ +|+.+|+|.+++...   +......+|+.+|..+. |||||.+.+++......+
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            3456778899999999999999954 599999999976533   34578999999999998 999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC-CCCHHHHHHHHH
Q 011025          464 LIYEYMPNKSLDVHLFGL-SLSLSIKCYLLY  493 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~-~~~~~~~~~l~~  493 (495)
                      +|||++.+|.|.+.|... -.+......+.+
T Consensus       113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~  143 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQ  143 (382)
T ss_pred             EEEEecCCchHHHHHHHccCCHHHHHHHHHH
Confidence            999999999999999765 333334444433

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.02  E-value=1.1e-09  Score=112.92  Aligned_cols=94  Identities=23%  Similarity=0.373  Sum_probs=82.4

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ....|.....||+|.|+.|..+. ...+..||+|.+.+..  ....+.+.+|+++|..++|||||+++.+...+..+++|
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            34567788899999999999998 4469999999998653  34456699999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||..+|.+++||..+.
T Consensus       134 ~eya~~ge~~~yl~~~g  150 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHG  150 (596)
T ss_pred             EEeccCchhHHHHHhcc
Confidence            99999999999997654

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.02  E-value=5.3e-10  Score=114.76  Aligned_cols=93  Identities=31%  Similarity=0.468  Sum_probs=78.8

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...++||+|+||.||++..      .++..||||.++... ......+.+|+.++..+ +|+||++++|.+..++
T Consensus        36 ~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~  115 (374)
T cd05106          36 PRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGG  115 (374)
T ss_pred             cHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCC
Confidence            345788889999999999999872      234579999997543 34456789999999999 8999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++||||+++|+|.++|+..
T Consensus       116 ~~~lv~ey~~~g~L~~~l~~~  136 (374)
T cd05106         116 PVLVITEYCCYGDLLNFLRKK  136 (374)
T ss_pred             CeEEeHhhccCCcHHHHHHhh
Confidence            999999999999999999753

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.02  E-value=2.4e-09  Score=103.06  Aligned_cols=90  Identities=34%  Similarity=0.567  Sum_probs=78.2

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCC-----hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS-----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      |...+.||+|+||.||+|... +++.|++|.+....     .+..+.+.+|+.++.+++|+||+++.+.+..+...++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            556788999999999999965 78999999986432     234578999999999999999999999999889999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++++|.+++....
T Consensus        82 e~~~~~~L~~~~~~~~   97 (258)
T cd06632          82 ELVPGGSLAKLLKKYG   97 (258)
T ss_pred             EecCCCcHHHHHHhcC
Confidence            9999999999997643

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.02  E-value=1.4e-09  Score=107.11  Aligned_cols=92  Identities=32%  Similarity=0.634  Sum_probs=80.1

Q ss_pred             cCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      .++|...+.||+|+||.||++..      .++..+++|.+...+....+.+.+|+.++.+++||||+++.+++...+..+
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            35678889999999999999974      124568999998766666778999999999999999999999999889999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+++|+|.+++...
T Consensus        84 lv~e~~~~~~L~~~i~~~  101 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAH  101 (288)
T ss_pred             EEEEcCCCCCHHHHHHHc
Confidence            999999999999999743

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.01  E-value=8.6e-11  Score=117.55  Aligned_cols=104  Identities=25%  Similarity=0.405  Sum_probs=84.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHH--HHHHHHHHHcCC-CCCccceEEEEEeCC-EEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE--FKNEVNLIAKLQ-HKNLVRLLGCCLEGQ-ELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~--f~~E~~~l~~l~-H~niv~l~g~~~~~~-~~~l  464 (495)
                      .++|...++||.|.||.||+|+ ...|+.||||++++.-.. +++  =++|+..+.+|+ ||||++|..+..+.+ .+++
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s-~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYS-WEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhcc-HHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            4577888999999999999999 567899999999854322 333  368999999998 999999999998877 8999


Q ss_pred             EEecCCCCCHHHHHhcCCCC---HHHHHHHHHhC
Q 011025          465 IYEYMPNKSLDVHLFGLSLS---LSIKCYLLYIL  495 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~---~~~~~~l~~~L  495 (495)
                      |+|||+ -+|.++++++.+-   ..++.+|.|||
T Consensus        88 VfE~Md-~NLYqLmK~R~r~fse~~irnim~Qil  120 (538)
T KOG0661|consen   88 VFEFMD-CNLYQLMKDRNRLFSESDIRNIMYQIL  120 (538)
T ss_pred             eHHhhh-hhHHHHHhhcCCcCCHHHHHHHHHHHH
Confidence            999994 6799999876533   23666676664

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.01  E-value=2.9e-09  Score=104.22  Aligned_cols=94  Identities=23%  Similarity=0.418  Sum_probs=80.3

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      |...++||+|+||.||+|.. .++..+|+|.+.... ......|.+|+.++.+++||||+++++.+..++..++|+||++
T Consensus         6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06641           6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLG   85 (277)
T ss_pred             hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCC
Confidence            55678899999999999984 468899999986432 3445679999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCHH
Q 011025          471 NKSLDVHLFGLSLSLS  486 (495)
Q Consensus       471 ~GsL~~~L~~~~~~~~  486 (495)
                      +|+|.+++........
T Consensus        86 ~~~l~~~i~~~~~~~~  101 (277)
T cd06641          86 GGSALDLLEPGPLDET  101 (277)
T ss_pred             CCcHHHHHhcCCCCHH
Confidence            9999999986654444

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.01  E-value=1.8e-09  Score=106.83  Aligned_cols=96  Identities=26%  Similarity=0.425  Sum_probs=82.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...+.||+|+||.||++.. .++..+++|.+........+.+.+|+.++.+++|||++++.+.+...+..++|+||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            5677788999999999999984 467899999987554455678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCHH
Q 011025          470 PNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~  486 (495)
                      ++|+|.+++........
T Consensus        99 ~~~~L~~~~~~~~l~~~  115 (293)
T cd06647          99 AGGSLTDVVTETCMDEG  115 (293)
T ss_pred             CCCcHHHHHhhcCCCHH
Confidence            99999999987654443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.01  E-value=1.1e-09  Score=111.40  Aligned_cols=87  Identities=22%  Similarity=0.351  Sum_probs=74.8

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...++||+|+||.||++.. .+++.||||.+.... ......+.+|+.++.+++|+||+++++++...+..++|+||+
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecC
Confidence            455678899999999999984 468999999996543 334567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHH
Q 011025          470 PNKSLDVHL  478 (495)
Q Consensus       470 ~~GsL~~~L  478 (495)
                      ++|+|....
T Consensus       155 ~~~~L~~~~  163 (353)
T PLN00034        155 DGGSLEGTH  163 (353)
T ss_pred             CCCcccccc
Confidence            999997643

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.01  E-value=1.2e-09  Score=109.16  Aligned_cols=92  Identities=32%  Similarity=0.513  Sum_probs=76.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .+|...+.||+|+||.||+|.. .++.    .||+|.++.. .....++|.+|+.++..++||||++++|++... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            4588889999999999999984 3343    3899999754 344567899999999999999999999998764 5679


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      ++||+++|+|.+++.....
T Consensus        86 v~e~~~~g~l~~~l~~~~~  104 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKD  104 (316)
T ss_pred             eeecCCCCCHHHHHHhccc
Confidence            9999999999999987543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.01  E-value=9.3e-10  Score=107.59  Aligned_cols=91  Identities=32%  Similarity=0.644  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeeec------CCcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...+.||+|+||.||+|...      ++..|+||.++..... ..+.|.+|+.++.+++|+||+++.+.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            45777889999999999999853      2478999999865433 4678999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +++||+++|+|.++|...
T Consensus        85 lv~e~~~~~~L~~~i~~~  102 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSH  102 (280)
T ss_pred             EEEecCCCCCHHHHHHhc
Confidence            999999999999999754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.01  E-value=9.8e-10  Score=111.35  Aligned_cols=91  Identities=24%  Similarity=0.398  Sum_probs=79.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.||+|.++...   ......+.+|+.++..++|+||+++++.+..++..++|+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            3577889999999999999995 368999999997532   234567899999999999999999999999899999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 e~~~~~~L~~~l~~~   95 (350)
T cd05573          81 EYMPGGDLMNLLIRK   95 (350)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999999999765

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.01  E-value=1e-09  Score=109.21  Aligned_cols=91  Identities=19%  Similarity=0.330  Sum_probs=81.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .+.|.+.++||.|.-+.||+|. .+.++.||||++... ...+.+++.+|+..|..++||||++....+..+.++|+||.
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            4578888999999999999998 677899999999743 33447889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      ||.+||+.+.++.
T Consensus       105 fMa~GS~ldIik~  117 (516)
T KOG0582|consen  105 FMAGGSLLDIIKT  117 (516)
T ss_pred             hhcCCcHHHHHHH
Confidence            9999999999974

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.01  E-value=1.6e-09  Score=105.25  Aligned_cols=91  Identities=23%  Similarity=0.415  Sum_probs=79.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+++.+++|.++.........+.+|+.++..++||||+++++.....+..++++||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            4667778999999999999984 568899999997665555567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        89 ~~~~L~~~~~~~  100 (267)
T cd06645          89 GGGSLQDIYHVT  100 (267)
T ss_pred             CCCcHHHHHHhc
Confidence            999999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.01  E-value=1.5e-09  Score=105.40  Aligned_cols=86  Identities=23%  Similarity=0.414  Sum_probs=72.7

Q ss_pred             cccccCCceeEEeeeecC-------------CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          397 NKLGQGGFGPVYKGTLAD-------------GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~-------------g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      +.||+|+||.||+|....             ...|++|.+..........|.+|+.++..++||||+++++++......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999998532             2258999887654455668899999999999999999999999888899


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++||+++|+|..+++...
T Consensus        81 lv~e~~~~~~l~~~~~~~~   99 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKS   99 (262)
T ss_pred             EEEecccCCCHHHHHHhcC
Confidence            9999999999999997543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.00  E-value=4e-10  Score=115.16  Aligned_cols=100  Identities=27%  Similarity=0.438  Sum_probs=85.8

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +...|..-.+||+|.-|.||.+. ...++.||||++........+-..+|+.+|...+|+|||+++..++..+++|+|||
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            34566777899999999999997 56789999999987655556778999999999999999999999998999999999


Q ss_pred             cCCCCCHHHHHhcCCCCHHHH
Q 011025          468 YMPNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~~~  488 (495)
                      ||++|+|.+.+..........
T Consensus       351 ym~ggsLTDvVt~~~~~E~qI  371 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTRMTEGQI  371 (550)
T ss_pred             ecCCCchhhhhhcccccHHHH
Confidence            999999999998766555433

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.00  E-value=1.7e-09  Score=104.54  Aligned_cols=90  Identities=29%  Similarity=0.459  Sum_probs=77.7

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +|...+.||+|+||.||++...++..+++|.+.+.. ....+|.+|+.++..++|+||+++.+.+...+..++|+||+++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMAN   83 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCC
Confidence            466778999999999999987677789999986432 2345788999999999999999999999888899999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      ++|.+++....
T Consensus        84 ~~L~~~l~~~~   94 (256)
T cd05059          84 GCLLNYLRERK   94 (256)
T ss_pred             CCHHHHHHhcc
Confidence            99999997543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.00  E-value=1.7e-09  Score=106.05  Aligned_cols=89  Identities=27%  Similarity=0.502  Sum_probs=78.4

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      |...++||+|+||.||++... ++..+++|.+.....+..+.+.+|+.++..++||||+++.+.+..++..++|+||+++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            445678999999999999954 5778899999776666678899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|..++...
T Consensus        87 ~~l~~~~~~~   96 (282)
T cd06643          87 GAVDAVMLEL   96 (282)
T ss_pred             CcHHHHHHhc
Confidence            9999988753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.00  E-value=1.9e-09  Score=107.89  Aligned_cols=85  Identities=26%  Similarity=0.346  Sum_probs=72.7

Q ss_pred             cccccCCceeEEeeee----cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          397 NKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++||+|+||.||++..    ..|+.+|+|+++...  ......+.+|+.++.+++||||+++.+.+..++..++|+||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999998863    357899999997532  2234567889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++...
T Consensus        82 ~~~L~~~l~~~   92 (318)
T cd05582          82 GGDLFTRLSKE   92 (318)
T ss_pred             CCcHHHHHHHc
Confidence            99999999754

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.00  E-value=2e-09  Score=104.52  Aligned_cols=90  Identities=26%  Similarity=0.514  Sum_probs=77.7

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCC------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      +|+..+.||+|+||.||++. ..+++.+++|.++...      .+..+.+.+|+.++++++|+||+++++.+...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            36677899999999999998 4578899999997432      1235679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||+++++|.+++...
T Consensus        81 v~e~~~~~~L~~~l~~~   97 (268)
T cd06630          81 FVEWMAGGSVSHLLSKY   97 (268)
T ss_pred             EEeccCCCcHHHHHHHh
Confidence            99999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.00  E-value=1.4e-09  Score=106.81  Aligned_cols=90  Identities=32%  Similarity=0.554  Sum_probs=77.4

Q ss_pred             CCcccccccccCCceeEEeeee-----cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|+..++||+|+||.||+|..     ..+..|++|.+... ..+...+|.+|+.++++++||||+++++++..+...++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            3567778999999999999973     24578999999754 33445789999999999999999999999998889999


Q ss_pred             EEecCCCCCHHHHHhc
Q 011025          465 IYEYMPNKSLDVHLFG  480 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~  480 (495)
                      ++||+++|+|.+++..
T Consensus        85 v~e~~~~~~L~~~l~~  100 (283)
T cd05090          85 LFEYLNQGDLHEFLIM  100 (283)
T ss_pred             EEEcCCCCcHHHHHHh
Confidence            9999999999999963

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.00  E-value=2.1e-09  Score=104.58  Aligned_cols=85  Identities=29%  Similarity=0.441  Sum_probs=72.3

Q ss_pred             ccccCCceeEEeeeecC---CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          398 KLGQGGFGPVYKGTLAD---GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~~~---g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      +||+|+||.||+|...+   ...+++|.+.... ......|.+|+.+++.++|+||+++++.+......++|+||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999997433   3578899886543 3445678999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011025          474 LDVHLFGLS  482 (495)
Q Consensus       474 L~~~L~~~~  482 (495)
                      |.++|....
T Consensus        82 L~~~l~~~~   90 (269)
T cd05042          82 LKNYLRSNR   90 (269)
T ss_pred             HHHHHHhcc
Confidence            999997643

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.00  E-value=2.5e-09  Score=106.02  Aligned_cols=96  Identities=25%  Similarity=0.466  Sum_probs=83.8

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+|...++||.|+||.||+|. ..+++.|++|.+........+.+.+|+.+++.++||||+++++.+...+..++|+||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            467888899999999999998 4578999999997655555678899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCHH
Q 011025          470 PNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~  486 (495)
                      ++|+|.+++......+.
T Consensus        99 ~~~~L~~~~~~~~l~~~  115 (296)
T cd06655          99 AGGSLTDVVTETCMDEA  115 (296)
T ss_pred             CCCcHHHHHHhcCCCHH
Confidence            99999999987654444

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.00  E-value=2.4e-09  Score=107.66  Aligned_cols=86  Identities=16%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             ccccccC--CceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          396 ENKLGQG--GFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       396 ~~~LG~G--~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      .++||+|  +|+.||++.. .+|+.||+|+++...  ....+.+.+|+.+++.++||||+++++++..++..++|+||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            5689999  6889999984 578999999997542  2334567889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++..+
T Consensus        83 ~~~l~~~~~~~   93 (327)
T cd08227          83 YGSAKDLICTH   93 (327)
T ss_pred             CCcHHHHHHhh
Confidence            99999999653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.00  E-value=2e-09  Score=108.08  Aligned_cols=86  Identities=30%  Similarity=0.477  Sum_probs=73.2

Q ss_pred             cccccCCceeEEeeee----cCCcEEEEEEcccC----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          397 NKLGQGGFGPVYKGTL----ADGKAIAVKRLSRT----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++||+|+||.||++..    ..++.||||.++..    .......+.+|+.++..++||||+++++.+..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999874    35789999999743    123345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++|+|.+++....
T Consensus        82 ~~~~~L~~~~~~~~   95 (323)
T cd05584          82 LSGGELFMHLEREG   95 (323)
T ss_pred             CCCchHHHHHHHcC
Confidence            99999999997543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=98.99  E-value=3.7e-09  Score=103.44  Aligned_cols=94  Identities=21%  Similarity=0.427  Sum_probs=80.6

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .|+..++||+|+||.||+|.. .+++.|++|.++.. .......+.+|+.++.+++|+||+++++.+..+...++|+||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            456678899999999999985 45889999998754 3455678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCH
Q 011025          470 PNKSLDVHLFGLSLSL  485 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~  485 (495)
                      ++|+|.+++.......
T Consensus        85 ~~~~L~~~i~~~~l~~  100 (277)
T cd06640          85 GGGSALDLLRAGPFDE  100 (277)
T ss_pred             CCCcHHHHHhcCCCCH
Confidence            9999999998654333

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=98.99  E-value=3.3e-09  Score=104.01  Aligned_cols=87  Identities=23%  Similarity=0.348  Sum_probs=75.8

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...++||+|+||.||++. ..+++.+++|.+... ......+|.+|+.++.+++||||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            46677899999999999998 457889999998654 3444567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHH
Q 011025          470 PNKSLDVHL  478 (495)
Q Consensus       470 ~~GsL~~~L  478 (495)
                      ++|+|..+.
T Consensus        82 ~~~~l~~~~   90 (279)
T cd06619          82 DGGSLDVYR   90 (279)
T ss_pred             CCCChHHhh
Confidence            999998764

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.99  E-value=2.2e-09  Score=113.85  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=77.4

Q ss_pred             CcccccccccCCceeEEeeee-cC-CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-AD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~-g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .|...+.||+|+||.||++.. .+ ++.|++|.+..........+.+|+.+++.++||||+++++.+...+..+|||||+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            377788999999999999973 33 6788999876555555667889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011025          470 PNKSLDVHLFG  480 (495)
Q Consensus       470 ~~GsL~~~L~~  480 (495)
                      ++|+|.++|+.
T Consensus       148 ~gg~L~~~l~~  158 (478)
T PTZ00267        148 SGGDLNKQIKQ  158 (478)
T ss_pred             CCCCHHHHHHH
Confidence            99999998864

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=98.99  E-value=1.8e-09  Score=105.53  Aligned_cols=93  Identities=33%  Similarity=0.511  Sum_probs=79.0

Q ss_pred             hcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .+++|...++||+|+||.||+|...      .+..||+|.+... ......+|.+|+.++..++||||+++++++..+..
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            3567888999999999999998742      2467999998643 23445679999999999999999999999988889


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++|+||+++|+|.+++...
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~  103 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSL  103 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHc
Confidence            99999999999999999753

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=98.99  E-value=1.7e-09  Score=105.51  Aligned_cols=92  Identities=33%  Similarity=0.543  Sum_probs=78.6

Q ss_pred             CCcccccccccCCceeEEeeeec------CCcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|.....||+|+||.||++...      ....|++|.+...... ..++|.+|+.++.+++|+||+++++.+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            46777889999999999999853      2457999998765443 4578999999999999999999999998888899


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        85 lv~e~~~~~~L~~~i~~~~  103 (275)
T cd05046          85 MILEYTDLGDLKQFLRATK  103 (275)
T ss_pred             EEEEecCCCcHHHHHHhcc
Confidence            9999999999999997544

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.99  E-value=3.5e-10  Score=99.64  Aligned_cols=102  Identities=25%  Similarity=0.465  Sum_probs=79.6

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++...++||+|.||+|+|+. ...++.||+|+++..+.  .--..-++|+.+++.++|+|||+++.+...+..+-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            45567899999999999998 55688999999974432  2245678999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcCCCCH---HHHHHHHHh
Q 011025          469 MPNKSLDVHLFGLSLSL---SIKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~~~---~~~~~l~~~  494 (495)
                      + ..+|..|........   ..+.+|.|+
T Consensus        83 c-dqdlkkyfdslng~~d~~~~rsfmlql  110 (292)
T KOG0662|consen   83 C-DQDLKKYFDSLNGDLDPEIVRSFMLQL  110 (292)
T ss_pred             h-hHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence            9 567888775433222   245555554

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=98.99  E-value=2.3e-09  Score=103.13  Aligned_cols=90  Identities=29%  Similarity=0.423  Sum_probs=78.9

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|+..+.||+|+||.||++.. .+++.+++|.+...  ......++.+|+.++++++||||+++++.+...+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            356678899999999999985 46889999998643  345567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.++++..
T Consensus        81 ~~~~~L~~~l~~~   93 (256)
T cd08529          81 AENGDLHKLLKMQ   93 (256)
T ss_pred             CCCCcHHHHHHHh
Confidence            9999999999764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=98.99  E-value=2.5e-09  Score=105.05  Aligned_cols=91  Identities=20%  Similarity=0.254  Sum_probs=78.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|+..++||+|+||.||++.. ++|+.+++|.+.... ......+.+|+.++..++||||+++++.+...+..++|+||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            4566778999999999999984 568899999886543 34467899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        85 ~~~~~L~~~~~~~   97 (284)
T cd06620          85 MDCGSLDRIYKKG   97 (284)
T ss_pred             CCCCCHHHHHHhc
Confidence            9999999988753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=98.99  E-value=1.4e-09  Score=106.77  Aligned_cols=90  Identities=23%  Similarity=0.372  Sum_probs=78.9

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...+.||+|+||.||++... .+..+++|.++.. .......+.+|+.++.+++|+||+++++.+...+..++|+||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            5667889999999999999854 6889999998753 3344578999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++++|..++...
T Consensus        82 ~~~~l~~~~~~~   93 (286)
T cd06622          82 DAGSLDKLYAGG   93 (286)
T ss_pred             CCCCHHHHHHhc
Confidence            999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=98.99  E-value=2.1e-09  Score=108.42  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++... .++.+|+|.+.+..   ......|.+|+.++..++|+||+++.+.+...+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            36778899999999999999864 47789999996431   223456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.++|..
T Consensus        81 ey~~~g~L~~~l~~   94 (332)
T cd05623          81 DYYVGGDLLTLLSK   94 (332)
T ss_pred             eccCCCcHHHHHHH
Confidence            99999999999976

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=98.99  E-value=2.6e-09  Score=107.38  Aligned_cols=85  Identities=25%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             cccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      +.||+|+||.||++. ..+|+.||+|.++..   .......+.+|+.++..++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            368999999999998 457889999999753   2334567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhcC
Q 011025          473 SLDVHLFGL  481 (495)
Q Consensus       473 sL~~~L~~~  481 (495)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (325)
T cd05594          81 ELFFHLSRE   89 (325)
T ss_pred             cHHHHHHhc
Confidence            999998654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=98.99  E-value=3e-09  Score=102.75  Aligned_cols=92  Identities=24%  Similarity=0.458  Sum_probs=82.0

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .++..+++|.+........+.+.+|+.++.+++||||+++.+.....+..++++||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            45788889999999999999985 45788999999866555678899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        82 ~~~~~l~~~~~~~   94 (262)
T cd06613          82 CGGGSLQDIYQVT   94 (262)
T ss_pred             CCCCcHHHHHHhh
Confidence            9999999998765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=98.99  E-value=2.4e-09  Score=106.33  Aligned_cols=92  Identities=26%  Similarity=0.397  Sum_probs=77.5

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++.. .+++.||||.++.... .....+.+|+.+++.++||||+++.+++..++..++|+|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            36788889999999999999995 4688999999975432 234567899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |++ ++|.+++....
T Consensus        84 ~~~-~~l~~~~~~~~   97 (303)
T cd07869          84 YVH-TDLCQYMDKHP   97 (303)
T ss_pred             CCC-cCHHHHHHhCC
Confidence            995 78888887543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.99  E-value=1.7e-09  Score=104.33  Aligned_cols=84  Identities=33%  Similarity=0.576  Sum_probs=70.7

Q ss_pred             cccccCCceeEEeeeecCCc-----------EEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          397 NKLGQGGFGPVYKGTLADGK-----------AIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~-----------~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++||+|+||.||+|...+..           .|++|.+...... ...|.+|+.++.+++||||++++|.+.. ...++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            46899999999999964432           4788877654333 6789999999999999999999999988 778999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus        79 ~e~~~~~~L~~~l~~~~   95 (259)
T cd05037          79 EEYVKFGPLDVFLHREK   95 (259)
T ss_pred             EEcCCCCcHHHHHHhhc
Confidence            99999999999998654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=98.98  E-value=1.6e-09  Score=106.03  Aligned_cols=94  Identities=24%  Similarity=0.453  Sum_probs=79.8

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      |+..+.||+|+||.||+|.. .++..|++|.++... ....+.+.+|+.++++++||||+++++.+..+...++|+||++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            55567899999999999985 457889999987443 3446789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCHH
Q 011025          471 NKSLDVHLFGLSLSLS  486 (495)
Q Consensus       471 ~GsL~~~L~~~~~~~~  486 (495)
                      +++|.+++........
T Consensus        86 ~~~L~~~~~~~~~~~~  101 (277)
T cd06642          86 GGSALDLLKPGPLEET  101 (277)
T ss_pred             CCcHHHHhhcCCCCHH
Confidence            9999999976554444

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=98.98  E-value=2.8e-09  Score=107.05  Aligned_cols=94  Identities=23%  Similarity=0.376  Sum_probs=75.8

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHH---HcCCCCCccceEEEEEeCCEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLI---AKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l---~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      |...++||+|+||.||++.. .+++.||||.+++..   ....+.+.+|+.++   ..++||||+++++++..++..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            34567899999999999985 468899999997432   23345677776655   567899999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      |||+++|+|..+++.......
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~  101 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEP  101 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHH
Confidence            999999999999987654444

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=98.98  E-value=3.8e-09  Score=102.48  Aligned_cols=89  Identities=28%  Similarity=0.502  Sum_probs=77.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|.. .+++.|+||.++..   ..+....|.+|+.++..++||||+++++.+...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4678889999999999999984 47899999988642   2344567899999999999999999999999899999999


Q ss_pred             ecCCCCCHHHHHh
Q 011025          467 EYMPNKSLDVHLF  479 (495)
Q Consensus       467 Ey~~~GsL~~~L~  479 (495)
                      ||+++|+|.+++.
T Consensus        82 e~~~~~~L~~~~~   94 (267)
T cd08228          82 ELADAGDLSQMIK   94 (267)
T ss_pred             EecCCCcHHHHHH
Confidence            9999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=98.98  E-value=7.3e-10  Score=107.26  Aligned_cols=86  Identities=29%  Similarity=0.493  Sum_probs=73.3

Q ss_pred             cccccCCceeEEeeeecC--------CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          397 NKLGQGGFGPVYKGTLAD--------GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~--------g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +.||+|+||.||+|....        ...+++|.+........++|.+|+.++..++||||+++.+.+..++..++|+||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            469999999999998422        234888888765555567899999999999999999999999998889999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++|+|.++++...
T Consensus        81 ~~~g~L~~~l~~~~   94 (258)
T cd05078          81 VKFGSLDTYLKKNK   94 (258)
T ss_pred             CCCCcHHHHHhcCC
Confidence            99999999998654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=98.98  E-value=2e-09  Score=104.23  Aligned_cols=90  Identities=34%  Similarity=0.474  Sum_probs=77.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+.|...++||+|+||.||++...+++.+++|.+.... ...++|.+|+.++.+++|+||+++.++. ..+..++++||+
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~e~~   82 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEYM   82 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEEEcC
Confidence            45677889999999999999998888999999997543 3356899999999999999999999876 456689999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        83 ~~~~L~~~~~~~   94 (260)
T cd05067          83 ENGSLVDFLKTP   94 (260)
T ss_pred             CCCCHHHHHHhc
Confidence            999999998753

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=98.98  E-value=4.1e-09  Score=102.86  Aligned_cols=95  Identities=22%  Similarity=0.375  Sum_probs=81.5

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...+.||.|+||.||+|.. .+++.|++|.+.... ......+.+|+.++++++|+||+++.+.+..+...++|+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            566778999999999999985 468899999997543 445677899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCHH
Q 011025          470 PNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~  486 (495)
                      ++++|.+++........
T Consensus        82 ~~~~L~~~~~~~~~~~~   98 (274)
T cd06609          82 GGGSCLDLLKPGKLDET   98 (274)
T ss_pred             CCCcHHHHHhhcCCCHH
Confidence            99999999987643443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=98.98  E-value=1.6e-09  Score=106.65  Aligned_cols=92  Identities=33%  Similarity=0.563  Sum_probs=79.6

Q ss_pred             cCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...+.||+|+||.||++...      .+..|++|.+... +.+...+|.+|+.++++++||||+++.+++..+...
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            457888899999999999999753      3678999999754 344567899999999999999999999999988889


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++++||+++|+|.+++...
T Consensus        84 ~lv~e~~~~~~L~~~l~~~  102 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHR  102 (288)
T ss_pred             EEEEecCCCCCHHHHHHHc
Confidence            9999999999999999743

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=98.97  E-value=3.1e-09  Score=104.26  Aligned_cols=91  Identities=35%  Similarity=0.620  Sum_probs=79.9

Q ss_pred             CCcccccccccCCceeEEeeee------cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++...++||+|+||.||++..      .++..+++|.++.........|.+|+.++..++|+||+++++.+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            4566788999999999999863      2356899999987776777889999999999999999999999998888999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ++||+++|+|.++++..
T Consensus        85 v~e~~~~~~L~~~i~~~  101 (280)
T cd05092          85 VFEYMRHGDLNRFLRSH  101 (280)
T ss_pred             EEecCCCCCHHHHHHhc
Confidence            99999999999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=98.97  E-value=3.8e-09  Score=102.17  Aligned_cols=90  Identities=27%  Similarity=0.489  Sum_probs=79.3

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||+|.. .+++.+++|.++....  ....++.+|+.++..++|+||+++++.+...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            356678999999999999985 4688999999975543  3577899999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~L~~~~~~~   93 (264)
T cd06626          81 CSGGTLEELLEHG   93 (264)
T ss_pred             CCCCcHHHHHhhc
Confidence            9999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=98.97  E-value=5.9e-10  Score=107.16  Aligned_cols=104  Identities=23%  Similarity=0.450  Sum_probs=81.3

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh-hh-HHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG-QG-LQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~-~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  465 (495)
                      ++|...+.|++|.||.||+|. -++++.||+|+++-... .+ --.-++||.++.+.+|||||.+..+....  +..+||
T Consensus        76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V  155 (419)
T KOG0663|consen   76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV  155 (419)
T ss_pred             HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence            457778999999999999999 45688999999974322 11 12347999999999999999998887764  568999


Q ss_pred             EecCCCCCHHHHHhcCC---CCHHHHHHHHHhC
Q 011025          466 YEYMPNKSLDVHLFGLS---LSLSIKCYLLYIL  495 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~---~~~~~~~~l~~~L  495 (495)
                      |||+++ ||...|..-.   ....+++.+.|+|
T Consensus       156 Me~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL  187 (419)
T KOG0663|consen  156 MEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLL  187 (419)
T ss_pred             HHHHHh-hHHHHHHhccCCCchHHHHHHHHHHH
Confidence            999975 7888886533   4445888888765

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=98.97  E-value=3e-09  Score=104.07  Aligned_cols=91  Identities=33%  Similarity=0.572  Sum_probs=77.5

Q ss_pred             CcccccccccCCceeEEeeeec-----CCcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-----DGKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-----~g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      .|...+.||+|+||.||++...     .+..+|||.++..... ..++|.+|+.++..++|+||+++.+++..  ....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            4566788999999999999853     3678999999865432 56789999999999999999999998876  45789


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++||+++|+|.+++....
T Consensus        85 lv~e~~~~~~l~~~l~~~~  103 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHR  103 (284)
T ss_pred             EEEecCCCCCHHHHHHhCc
Confidence            9999999999999998755

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.97  E-value=3e-09  Score=104.88  Aligned_cols=91  Identities=25%  Similarity=0.389  Sum_probs=76.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .++..||+|.++... ......+.+|+.++.+++||||++++++....+..++|+||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            4577889999999999999984 468899999997442 23345688999999999999999999999888889999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ |+|.+++....
T Consensus        85 ~~-~~l~~~l~~~~   97 (288)
T cd07871          85 LD-SDLKQYLDNCG   97 (288)
T ss_pred             CC-cCHHHHHHhcC
Confidence            97 59999987543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=98.97  E-value=3.2e-09  Score=106.88  Aligned_cols=85  Identities=19%  Similarity=0.350  Sum_probs=72.8

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+++.||+|.+++.   .......+..|..++..+ +||||+++.+++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999985 46889999999753   233456688999999998 799999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~~~~~   90 (329)
T cd05588          81 GDLMFHMQRQ   90 (329)
T ss_pred             CCHHHHHHHc
Confidence            9999988643

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=98.97  E-value=1.6e-09  Score=106.79  Aligned_cols=92  Identities=30%  Similarity=0.473  Sum_probs=78.1

Q ss_pred             hcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      ..++|...++||+|+||.||+|...      .+..||+|.+.... ......+.+|+.++..++||||+++++.+..++.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888899999999999998642      24579999987443 3345578999999999999999999999988889


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011025          462 LLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~  480 (495)
                      .++|+||+++|+|.+++..
T Consensus        84 ~~lv~e~~~~g~L~~~l~~  102 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRS  102 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999975

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.97  E-value=7.8e-10  Score=111.46  Aligned_cols=104  Identities=27%  Similarity=0.317  Sum_probs=86.0

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      -|.+++.||+|.|..|-.+. .=.|+.||||++.+.  +.-....+..|++.|+-++|||||+|+.+...+..+|||+|+
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEe
Confidence            45667889999999887765 237999999999865  334456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCHH---HHHHHHHhC
Q 011025          469 MPNKSLDVHLFGLSLSLS---IKCYLLYIL  495 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~~~~---~~~~l~~~L  495 (495)
                      -.+|+|++||-.+...+.   .+.|.+|||
T Consensus        99 GD~GDl~DyImKHe~Gl~E~La~kYF~QI~  128 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHEEGLNEDLAKKYFAQIV  128 (864)
T ss_pred             cCCchHHHHHHhhhccccHHHHHHHHHHHH
Confidence            999999999976654333   667777764

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=98.97  E-value=2.2e-09  Score=105.43  Aligned_cols=88  Identities=20%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||++... +++.+|||+++..  .....+.+.+|+.++..++||||+++.+++...+..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5778889999999999999964 5789999999743  233456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHh
Q 011025          469 MPNKSLDVHLF  479 (495)
Q Consensus       469 ~~~GsL~~~L~  479 (495)
                      ++++.|..+..
T Consensus        82 ~~~~~l~~~~~   92 (287)
T cd07848          82 VEKNMLELLEE   92 (287)
T ss_pred             CCCCHHHHHHh
Confidence            99887776554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=98.96  E-value=3.5e-09  Score=102.51  Aligned_cols=84  Identities=29%  Similarity=0.502  Sum_probs=70.2

Q ss_pred             ccccCCceeEEeeeec---CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          398 KLGQGGFGPVYKGTLA---DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .||+|+||.||+|...   .+..||+|.+.... ....++|.+|+.++.+++||||+++++++. .+..++|+||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            4899999999999753   35579999997653 334567999999999999999999999875 456799999999999


Q ss_pred             HHHHHhcCC
Q 011025          474 LDVHLFGLS  482 (495)
Q Consensus       474 L~~~L~~~~  482 (495)
                      |.+++....
T Consensus        81 L~~~l~~~~   89 (257)
T cd05115          81 LNKFLSGKK   89 (257)
T ss_pred             HHHHHHhCC
Confidence            999997544

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=98.96  E-value=3.2e-09  Score=102.33  Aligned_cols=90  Identities=27%  Similarity=0.514  Sum_probs=78.3

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +|...+.||+|+||.||++...++..+++|.++... ....+|.+|+.++.+++|||++++++.+......++++||+++
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH   83 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC
Confidence            566778999999999999987668899999987542 2346799999999999999999999999888899999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++....
T Consensus        84 ~~L~~~~~~~~   94 (256)
T cd05112          84 GCLSDYLRAQR   94 (256)
T ss_pred             CcHHHHHHhCc
Confidence            99999997643

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=98.96  E-value=3.2e-09  Score=102.23  Aligned_cols=91  Identities=24%  Similarity=0.437  Sum_probs=80.0

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++... ++..+++|.++....  .+++.+|+.++.+++|+||+++.+.+......++++||
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            356788899999999999999964 478999999975432  67899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++++|.+++....
T Consensus        80 ~~~~~L~~~l~~~~   93 (256)
T cd06612          80 CGAGSVSDIMKITN   93 (256)
T ss_pred             CCCCcHHHHHHhCc
Confidence            99999999997543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=98.96  E-value=2.9e-09  Score=103.32  Aligned_cols=90  Identities=27%  Similarity=0.492  Sum_probs=78.2

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++. ..+++.++||.+...   ......+|.+|+.++..++|+||+++++.+..++..++++
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            357778899999999999999 457899999988643   2334568999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++++|.+++..
T Consensus        82 e~~~~~~L~~~~~~   95 (267)
T cd08229          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             EecCCCCHHHHHHH
Confidence            99999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=98.96  E-value=3.7e-09  Score=103.47  Aligned_cols=92  Identities=32%  Similarity=0.524  Sum_probs=77.3

Q ss_pred             CCcccccccccCCceeEEeeeec-CCc----EEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGK----AIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~----~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|... +|+    .+++|.+.... .....++.+|+.++.+++||||+++++++.. +..++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            45677789999999999999853 333    58999887554 3456789999999999999999999999887 78899


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      |+||+++|+|.+++.....
T Consensus        86 v~e~~~~g~L~~~l~~~~~  104 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD  104 (279)
T ss_pred             EEecCCCCcHHHHHHhccC
Confidence            9999999999999987543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=98.96  E-value=2.2e-09  Score=105.01  Aligned_cols=93  Identities=29%  Similarity=0.463  Sum_probs=79.6

Q ss_pred             hcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .+++|...++||+|+||.||++...      .+..|++|.++... ......|.+|+.++..++|+||+++++++...+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3456888899999999999999864      35678999887543 3445679999999999999999999999998888


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++|+||+++|+|.+++...
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~  103 (277)
T cd05036          84 RFILLELMAGGDLKSFLREN  103 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHh
Confidence            99999999999999999754

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=98.96  E-value=4.6e-09  Score=101.21  Aligned_cols=90  Identities=23%  Similarity=0.351  Sum_probs=78.5

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|+..++||+|+||.||.+. ..+++.+++|.+...  +.....++.+|+.++++++|+||+++++++...+..++++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            46678899999999998887 456889999998643  345567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        81 ~~~~~L~~~~~~~   93 (256)
T cd08221          81 ANGGTLYDKIVRQ   93 (256)
T ss_pred             cCCCcHHHHHHhc
Confidence            9999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=98.96  E-value=4.2e-09  Score=104.73  Aligned_cols=92  Identities=15%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. ..++.|++|.+....   ......+.+|+.++..++||||+++++.+..++..++|+
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            3577788999999999999984 457899999987543   234567889999999999999999999999889999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        81 e~~~g~~L~~~l~~~~   96 (305)
T cd05609          81 EYVEGGDCATLLKNIG   96 (305)
T ss_pred             ecCCCCcHHHHHHHcC
Confidence            9999999999997543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=98.95  E-value=1.6e-09  Score=109.74  Aligned_cols=92  Identities=26%  Similarity=0.437  Sum_probs=76.6

Q ss_pred             cCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC-C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG-Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-~  460 (495)
                      .++|...++||+|+||.||++..      ..++.||||.++... ......+.+|+.++.++ +|+||+++++.+... .
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            45788899999999999999962      346789999997543 33456789999999999 789999999988654 5


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++++||+++|+|.++++..
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~  106 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSK  106 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhc
Confidence            679999999999999999754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=98.95  E-value=4.2e-09  Score=103.84  Aligned_cols=90  Identities=31%  Similarity=0.441  Sum_probs=78.4

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +|...+.||+|+||.||++.. .+++.+++|.+....   ....+.+.+|+.++.+++||||+++++....+...++|+|
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            577788999999999999985 468999999987432   2345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++|+|.+++...
T Consensus        82 ~~~~~~L~~~~~~~   95 (290)
T cd05580          82 YVPGGELFSHLRKS   95 (290)
T ss_pred             cCCCCCHHHHHHHc
Confidence            99999999999654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=98.95  E-value=3.2e-09  Score=105.53  Aligned_cols=93  Identities=32%  Similarity=0.456  Sum_probs=78.8

Q ss_pred             cCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  461 (495)
                      .++|...++||+|+||.||++..      ..+..||||.++... ....+.+.+|+.++.++ +||||+++++.+...+.
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            35688889999999999999863      134579999997543 34456799999999999 79999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++++||+++|+|.++++...
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~  134 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKR  134 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCC
Confidence            999999999999999997543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=98.95  E-value=3.7e-09  Score=102.42  Aligned_cols=90  Identities=31%  Similarity=0.452  Sum_probs=78.0

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .+++...++||+|+||.||++....+..+++|.+.... ...+.|.+|+.++++++|+||+++.+.... ...++++||+
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~   82 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFM   82 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeC
Confidence            45778889999999999999997777889999887542 345679999999999999999999998876 6789999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        83 ~~~~L~~~~~~~   94 (260)
T cd05073          83 AKGSLLDFLKSD   94 (260)
T ss_pred             CCCcHHHHHHhC
Confidence            999999999763

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=98.95  E-value=3.3e-09  Score=117.71  Aligned_cols=90  Identities=21%  Similarity=0.374  Sum_probs=78.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|.. ..|+.||+|+++...   ....+.|.+|+.++++++||||+++.+++..++..+++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            4678889999999999999984 468899999997532   233567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.++|..
T Consensus        82 EY~eGGSL~~lL~s   95 (932)
T PRK13184         82 PYIEGYTLKSLLKS   95 (932)
T ss_pred             EcCCCCCHHHHHHH
Confidence            99999999999864

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=98.95  E-value=4.4e-09  Score=101.04  Aligned_cols=86  Identities=33%  Similarity=0.589  Sum_probs=76.0

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHH
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLD  475 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  475 (495)
                      ++||+|+||.||++...+++.|++|.++.... +....|.+|+.++.+++|+||+++++.+......++|+||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            46999999999999976699999999876533 35678999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 011025          476 VHLFGLS  482 (495)
Q Consensus       476 ~~L~~~~  482 (495)
                      +++....
T Consensus        81 ~~l~~~~   87 (251)
T cd05041          81 TFLRKKK   87 (251)
T ss_pred             HHHHhcC
Confidence            9996543

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=98.95  E-value=4.2e-09  Score=103.48  Aligned_cols=90  Identities=32%  Similarity=0.547  Sum_probs=76.2

Q ss_pred             CcccccccccCCceeEEeeee-----cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  463 (495)
                      .|...++||+|+||.||.+.+     ..+..|++|.++... ....+.+.+|+.+++.++||||+++.+++...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            456778999999999999874     347789999997553 44467899999999999999999999988764  5679


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+++++|.+++...
T Consensus        85 lv~e~~~g~~L~~~l~~~  102 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRN  102 (284)
T ss_pred             EEEEccCCCCHHHHHHhc
Confidence            999999999999999654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=98.94  E-value=3.7e-09  Score=102.95  Aligned_cols=91  Identities=24%  Similarity=0.399  Sum_probs=75.8

Q ss_pred             CCcccccccccCCceeEEeeeecC----CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||.||+|...+    ...|++|...... .+..+.|.+|+.++.+++||||+++++++.. +..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            456778899999999999998532    2468999887554 4556789999999999999999999998764 557899


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus        85 ~e~~~~~~L~~~l~~~~  101 (270)
T cd05056          85 MELAPLGELRSYLQVNK  101 (270)
T ss_pred             EEcCCCCcHHHHHHhCC
Confidence            99999999999997644

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=98.94  E-value=5.2e-09  Score=105.42  Aligned_cols=85  Identities=20%  Similarity=0.357  Sum_probs=72.3

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +.||+|+||.||++.. .+++.+|+|.+++.   .......+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4699999999999985 46789999999753   233456688899888877 899999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|..++...
T Consensus        81 ~~L~~~~~~~   90 (329)
T cd05618          81 GDLMFHMQRQ   90 (329)
T ss_pred             CCHHHHHHHc
Confidence            9999988654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=98.94  E-value=5.2e-09  Score=102.73  Aligned_cols=82  Identities=29%  Similarity=0.478  Sum_probs=70.6

Q ss_pred             cccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++.. .+++.+|+|.+....   .+..+.+..|+.++.+++|+||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999984 468899999997432   22346788999999999999999999999888999999999999999


Q ss_pred             HHHHhc
Q 011025          475 DVHLFG  480 (495)
Q Consensus       475 ~~~L~~  480 (495)
                      .+++..
T Consensus        81 ~~~~~~   86 (280)
T cd05608          81 RYHIYN   86 (280)
T ss_pred             HHHHHh
Confidence            988853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=98.94  E-value=3.9e-09  Score=102.45  Aligned_cols=90  Identities=32%  Similarity=0.479  Sum_probs=75.9

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...++||+|+||.||+|...+...|++|.++... ...+.|.+|+.++..++|+||+++.+... .+..++|+||+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc-cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            34578889999999999999987666789999997532 23467999999999999999999998764 45579999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        83 ~~~~L~~~~~~~   94 (262)
T cd05071          83 SKGSLLDFLKGE   94 (262)
T ss_pred             CCCcHHHHHhhc
Confidence            999999999753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=98.94  E-value=2.7e-09  Score=103.54  Aligned_cols=89  Identities=31%  Similarity=0.520  Sum_probs=78.0

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      +|...++||+|+||.||++.. +.+..|++|.++.. .....++.+|+.++..++|+||+++++.+...+..++++||++
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT   85 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCC
Confidence            466778999999999999985 45889999998754 3345789999999999999999999999998899999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++...
T Consensus        86 ~~~L~~~~~~~   96 (263)
T cd05052          86 YGNLLDYLREC   96 (263)
T ss_pred             CCcHHHHHHhC
Confidence            99999999753

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=98.94  E-value=4.7e-09  Score=101.66  Aligned_cols=90  Identities=28%  Similarity=0.504  Sum_probs=79.2

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|... +|+.+++|.++..   .....+.+.+|+.++.+++|+|++++++.+...+..++++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            56888899999999999999964 7899999988632   2334678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus        82 e~~~~~~L~~~l~~   95 (267)
T cd08224          82 ELADAGDLSRMIKH   95 (267)
T ss_pred             ecCCCCCHHHHHHH
Confidence            99999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=98.94  E-value=2.5e-09  Score=105.70  Aligned_cols=91  Identities=31%  Similarity=0.524  Sum_probs=77.1

Q ss_pred             CCcccccccccCCceeEEeeeecC---------------CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD---------------GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLG  454 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~---------------g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g  454 (495)
                      ++|...++||+|+||.||++...+               ...||+|.++.. .......|.+|+.++.+++|+||+++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            467788899999999999886421               235899999754 3444567999999999999999999999


Q ss_pred             EEEeCCEEEEEEecCCCCCHHHHHhcC
Q 011025          455 CCLEGQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       455 ~~~~~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++...+..++||||+++++|.+++...
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~  111 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQR  111 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhc
Confidence            999999999999999999999999653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=98.94  E-value=7.4e-09  Score=101.12  Aligned_cols=95  Identities=23%  Similarity=0.499  Sum_probs=80.3

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCC---CCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQ---HKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .|+..++||+|+||.||+|.. .+++.+++|.++.. ......++.+|+.++++++   |||++++++.+......++|+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            356678899999999999994 57899999998754 3445677899999999986   999999999999888999999


Q ss_pred             ecCCCCCHHHHHhcCCCCHH
Q 011025          467 EYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ||+++++|.+++........
T Consensus        82 e~~~~~~L~~~~~~~~l~~~  101 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEK  101 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHH
Confidence            99999999999977644433

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=98.93  E-value=5.4e-09  Score=102.92  Aligned_cols=89  Identities=29%  Similarity=0.455  Sum_probs=75.5

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||++.. .+++.+|+|.+....   ......+.+|+.++..++|+|++++.+.+..++..++++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            45567899999999999985 468899999997532   22345678999999999999999999999888999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        82 ~~~~~L~~~~~~~   94 (285)
T cd05632          82 MNGGDLKFHIYNM   94 (285)
T ss_pred             ccCccHHHHHHHh
Confidence            9999999988653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.93  E-value=6.2e-09  Score=100.68  Aligned_cols=91  Identities=30%  Similarity=0.549  Sum_probs=78.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-----hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||++.. .+++.+++|.+....     ......+.+|+.++.+++||||+++.+++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4678889999999999999984 468899999986432     1234678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ++||+++++|.+++...
T Consensus        82 v~e~~~~~~l~~~~~~~   98 (263)
T cd06625          82 FMEYMPGGSVKDQLKAY   98 (263)
T ss_pred             EEEECCCCcHHHHHHHh
Confidence            99999999999998753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=98.93  E-value=5.7e-09  Score=100.59  Aligned_cols=90  Identities=22%  Similarity=0.403  Sum_probs=78.0

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|+..++||+|+||.+|++.. .+|+.+++|.+...  ......++.+|+.++++++||||+++.+.+...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            366788999999999999984 56889999998643  334456899999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~l~~~~~~~   93 (256)
T cd08218          81 CEGGDLYKKINAQ   93 (256)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=98.93  E-value=5.6e-09  Score=104.72  Aligned_cols=86  Identities=23%  Similarity=0.368  Sum_probs=72.5

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||+|.. ..++.||+|.++..   .....+.+..|..++..+ +||||+++.+++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            3699999999999985 45789999999753   233456688899998876 899999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|..++....
T Consensus        81 ~~L~~~l~~~~   91 (321)
T cd05591          81 GDLMFQIQRSR   91 (321)
T ss_pred             CcHHHHHHHcC
Confidence            99999886543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=98.92  E-value=5.9e-09  Score=102.65  Aligned_cols=88  Identities=28%  Similarity=0.440  Sum_probs=75.2

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||++.. .+++.+|||.+....   .+....+.+|+.++.+++|+|++++.+.+...+..++|+||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            55667899999999999984 468899999987432   22345678999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus        82 ~~g~~L~~~l~~   93 (285)
T cd05630          82 MNGGDLKFHIYH   93 (285)
T ss_pred             cCCCcHHHHHHH
Confidence            999999999854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=98.92  E-value=6.1e-09  Score=101.42  Aligned_cols=89  Identities=25%  Similarity=0.457  Sum_probs=75.3

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCCh----------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG----------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~----------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      |...+.||+|+||.||+|.. .+|+.+++|.++....          ...+.+.+|+.++..++|+|++++++++..++.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45678899999999999984 4688999998853211          113568899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++|+||+++|+|.++++..
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~  102 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTY  102 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhc
Confidence            99999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=98.92  E-value=4.1e-09  Score=103.18  Aligned_cols=93  Identities=26%  Similarity=0.468  Sum_probs=79.2

Q ss_pred             hcCCcccccccccCCceeEEeeeecC-----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLAD-----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~-----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  461 (495)
                      ..++|...++||+|+||.||+|...+     +..|++|.+... .....+.+.+|+.++.+++|+||+++++++.. +..
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            34678888999999999999999654     678999998754 34446779999999999999999999999876 467


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++++||+++|+|.++|...
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~  103 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQC  103 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhc
Confidence            89999999999999999764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=98.92  E-value=6.5e-09  Score=103.55  Aligned_cols=91  Identities=25%  Similarity=0.406  Sum_probs=76.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|.. .+++.||+|.++... ......+.+|+.++.+++||||+++++++..++..++|+||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            4577889999999999999985 367889999997543 23345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ ++|.+++....
T Consensus        86 ~~-~~l~~~~~~~~   98 (309)
T cd07872          86 LD-KDLKQYMDDCG   98 (309)
T ss_pred             CC-CCHHHHHHhcC
Confidence            97 58999887543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=98.92  E-value=6.7e-09  Score=104.03  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=70.9

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHc-CCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAK-LQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +.||+|+||.||+|.. .+++.||||.++...   ......+..|..++.. ++||||+++.+++...+..++|+||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            3689999999999985 457899999997531   2334566778888876 4999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~l~~~   90 (316)
T cd05619          81 GDLMFHIQSC   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999999754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=98.92  E-value=6.6e-09  Score=104.40  Aligned_cols=85  Identities=27%  Similarity=0.391  Sum_probs=69.8

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHH-HHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVN-LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+|+.+|+|++...   .......+..|.. ++..++||||+++++.+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999984 56899999999743   2233455666665 46778999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|..++...
T Consensus        81 ~~L~~~l~~~   90 (325)
T cd05604          81 GELFFHLQRE   90 (325)
T ss_pred             CCHHHHHHHc
Confidence            9999988654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=98.92  E-value=9.7e-09  Score=100.91  Aligned_cols=93  Identities=28%  Similarity=0.431  Sum_probs=82.3

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++.|...+.||+|+||.||++... ++..+++|.+..... ..+.+.+|+.++..++|+|++++++.+...+..++++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            4566777889999999999999965 588999999976544 56778999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++++|.+++....
T Consensus        96 ~~~~~~L~~~l~~~~  110 (286)
T cd06614          96 YMDGGSLTDIITQNF  110 (286)
T ss_pred             ccCCCcHHHHHHHhc
Confidence            999999999998763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=98.91  E-value=9.8e-09  Score=98.97  Aligned_cols=89  Identities=20%  Similarity=0.317  Sum_probs=77.2

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...++||+|+||.||++.. .+++.+++|.++.. .....+.+.+|+.++.+++|+||+++.+.+..++..++++||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            356678999999999999984 46889999998643 3345677889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011025          470 PNKSLDVHLFG  480 (495)
Q Consensus       470 ~~GsL~~~L~~  480 (495)
                      ++|+|.+++..
T Consensus        81 ~~~~l~~~~~~   91 (255)
T cd08219          81 DGGDLMQKIKL   91 (255)
T ss_pred             CCCcHHHHHHh
Confidence            99999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=98.91  E-value=3.8e-09  Score=104.44  Aligned_cols=94  Identities=26%  Similarity=0.370  Sum_probs=79.9

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +....+||+|+||.||++.. .++..|++|.+.....+..+.+.+|+.++..++|+||+++++.+..++..++|+||+++
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            34456799999999999985 46889999999765555667899999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCHH
Q 011025          472 KSLDVHLFGLSLSLS  486 (495)
Q Consensus       472 GsL~~~L~~~~~~~~  486 (495)
                      ++|.+++........
T Consensus       104 ~~L~~~~~~~~l~~~  118 (292)
T cd06658         104 GALTDIVTHTRMNEE  118 (292)
T ss_pred             CcHHHHHhcCCCCHH
Confidence            999999876554443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=98.91  E-value=5e-09  Score=103.86  Aligned_cols=94  Identities=26%  Similarity=0.364  Sum_probs=79.5

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      |....+||+|+||.||++.. .+++.|++|.+........+.+.+|+.++..++||||+++++.+..++..++++||+++
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            33455799999999999985 46889999999755445567789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcCCCCHH
Q 011025          472 KSLDVHLFGLSLSLS  486 (495)
Q Consensus       472 GsL~~~L~~~~~~~~  486 (495)
                      ++|..++........
T Consensus       103 ~~L~~~~~~~~~~~~  117 (297)
T cd06659         103 GALTDIVSQTRLNEE  117 (297)
T ss_pred             CCHHHHHhhcCCCHH
Confidence            999998876554444

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=98.91  E-value=6.3e-09  Score=102.64  Aligned_cols=93  Identities=32%  Similarity=0.470  Sum_probs=78.9

Q ss_pred             cCCcccccccccCCceeEEeeeecC-----------------CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccc
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLAD-----------------GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVR  451 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~-----------------g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~  451 (495)
                      ..+|...++||+|+||.||++....                 +..|++|.+... .....++|.+|+.++.+++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3467788999999999999987432                 246899998754 3445678999999999999999999


Q ss_pred             eEEEEEeCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          452 LLGCCLEGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       452 l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++++...+..++++||+++++|.++|....
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHV  114 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcc
Confidence            9999998889999999999999999997644

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=98.91  E-value=9.9e-09  Score=99.59  Aligned_cols=91  Identities=27%  Similarity=0.488  Sum_probs=75.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QEL  462 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  462 (495)
                      .+|...++||+|+||.||++.. .++..|++|.+...     ..+..+.+.+|+.++.+++||||+++.+++...  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4678889999999999999985 46889999988532     123356789999999999999999999987653  457


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++++||+++|+|.+++...
T Consensus        82 ~~v~e~~~~~~L~~~l~~~  100 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSY  100 (265)
T ss_pred             EEEEEecCCCcHHHHHHHc
Confidence            8999999999999999654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=98.91  E-value=1.2e-08  Score=98.64  Aligned_cols=89  Identities=25%  Similarity=0.339  Sum_probs=79.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...+.||+|++|.||++... +++.++||.+..... .....+.+|+..+.+++|+||+++.+.+..++..++|+||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5777889999999999999964 589999999976543 45678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011025          470 PNKSLDVHLFG  480 (495)
Q Consensus       470 ~~GsL~~~L~~  480 (495)
                      ++++|.+++..
T Consensus        82 ~~~~L~~~l~~   92 (264)
T cd06623          82 DGGSLADLLKK   92 (264)
T ss_pred             CCCcHHHHHHH
Confidence            99999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=98.91  E-value=5e-09  Score=102.05  Aligned_cols=84  Identities=29%  Similarity=0.449  Sum_probs=70.5

Q ss_pred             ccccCCceeEEeeeecCC---cEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          398 KLGQGGFGPVYKGTLADG---KAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~~~g---~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      +||+|+||.||+|...++   ..+++|.+.... .+..+.|.+|+.++..++||||+++++.+......++|+||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            699999999999974333   346677776443 3456789999999999999999999999999889999999999999


Q ss_pred             HHHHHhcC
Q 011025          474 LDVHLFGL  481 (495)
Q Consensus       474 L~~~L~~~  481 (495)
                      |.++++..
T Consensus        82 L~~~l~~~   89 (268)
T cd05086          82 LKSYLSQE   89 (268)
T ss_pred             HHHHHHhh
Confidence            99999753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=98.91  E-value=5.5e-09  Score=103.23  Aligned_cols=89  Identities=25%  Similarity=0.442  Sum_probs=76.4

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCChh-----hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQ-----GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~-----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      |...++||+|+||.||+|.. .+++.|+||.++.....     ....+..|+.++.+++|+||+++++++...+..++|+
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            56678899999999999985 46889999999754322     2356788999999999999999999999988999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+ +|+|.+++....
T Consensus        82 e~~-~~~L~~~i~~~~   96 (298)
T cd07841          82 EFM-ETDLEKVIKDKS   96 (298)
T ss_pred             ccc-CCCHHHHHhccC
Confidence            999 999999998754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=98.91  E-value=5.7e-09  Score=102.82  Aligned_cols=88  Identities=33%  Similarity=0.514  Sum_probs=75.3

Q ss_pred             cccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      |...+.||+|+||.||+|...      ....+++|.+.... ....+.+.+|+.++..++||||+++++.+...+..+++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   81 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLI   81 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEE
Confidence            566789999999999999842      23578999887543 34467899999999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++|+|.+++..
T Consensus        82 ~e~~~~~~L~~~l~~   96 (290)
T cd05045          82 VEYAKYGSLRSFLRE   96 (290)
T ss_pred             EEecCCCCHHHHHHh
Confidence            999999999999875

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=98.91  E-value=7e-09  Score=103.98  Aligned_cols=85  Identities=28%  Similarity=0.401  Sum_probs=69.5

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHH-HHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVN-LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+++.+|+|.+.+..   ......+..|.. ++..++||||+++.+.+...+..++|+||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3699999999999985 468899999997432   223345666654 57889999999999999989999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|..++...
T Consensus        81 ~~L~~~l~~~   90 (321)
T cd05603          81 GELFFHLQRE   90 (321)
T ss_pred             CCHHHHHHHc
Confidence            9999988654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=98.91  E-value=5.6e-09  Score=101.02  Aligned_cols=89  Identities=30%  Similarity=0.441  Sum_probs=76.0

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...++||+|+||.||++...++..+++|.+..... ..+.|.+|+.++.+++|+|++++.++.. .+..+++|||++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~   83 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMS   83 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecC
Confidence            45677889999999999999987788899999975432 3467999999999999999999998874 556799999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +++|.++++..
T Consensus        84 ~~~L~~~~~~~   94 (260)
T cd05070          84 KGSLLDFLKDG   94 (260)
T ss_pred             CCcHHHHHHhc
Confidence            99999999753

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.91  E-value=5.7e-09  Score=104.67  Aligned_cols=85  Identities=25%  Similarity=0.415  Sum_probs=72.1

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+++.||||.+++.   .....+.+..|..++..+ +||||+++.+++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999985 45889999999743   223456778898888876 799999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~i~~~   90 (320)
T cd05590          81 GDLMFHIQKS   90 (320)
T ss_pred             chHHHHHHHc
Confidence            9999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=98.91  E-value=4.6e-09  Score=99.61  Aligned_cols=103  Identities=24%  Similarity=0.336  Sum_probs=84.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|.....||.|+||+|..... .+|...|+|++++..   .+..+...+|..++..+.||.++++.+-+.....++|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            4667788999999999999884 468899999998653   244667889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC--CCHHHHHHHHH
Q 011025          467 EYMPNKSLDVHLFGLS--LSLSIKCYLLY  493 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~--~~~~~~~~l~~  493 (495)
                      ||+++|.|..+|+...  .+...+.+-++
T Consensus       124 eyv~GGElFS~Lrk~~rF~e~~arFYAAe  152 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGRFSEPHARFYAAE  152 (355)
T ss_pred             eccCCccHHHHHHhcCCCCchhHHHHHHH
Confidence            9999999999998733  33334444443

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=98.91  E-value=8.1e-09  Score=99.37  Aligned_cols=90  Identities=23%  Similarity=0.386  Sum_probs=78.3

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||++.. .+++.++||.+...  +.+....+.+|+.++++++||||+++++.....+..++|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            356778999999999999984 46889999998753  334567899999999999999999999998888899999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~L~~~~~~~   93 (256)
T cd08220          81 APGGTLAEYIQKR   93 (256)
T ss_pred             CCCCCHHHHHHHh
Confidence            9999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=98.91  E-value=4.7e-09  Score=102.82  Aligned_cols=90  Identities=36%  Similarity=0.624  Sum_probs=76.9

Q ss_pred             CcccccccccCCceeEEeeeecC------CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLAD------GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~------g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      +|...+.||+|+||.||+|....      ...|++|.+.... .....+|.+|+.++.+++||||+++++++...+..++
T Consensus         6 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   85 (283)
T cd05048           6 AVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCM   85 (283)
T ss_pred             HcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEE
Confidence            56778899999999999998532      2579999997543 3445679999999999999999999999998889999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ++||+++|+|.++|...
T Consensus        86 ~~e~~~~~~L~~~l~~~  102 (283)
T cd05048          86 LFEYLAHGDLHEFLVRN  102 (283)
T ss_pred             EEecCCCCcHHHHHHhc
Confidence            99999999999999754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=98.90  E-value=7.8e-09  Score=101.96  Aligned_cols=91  Identities=30%  Similarity=0.583  Sum_probs=78.8

Q ss_pred             CCcccccccccCCceeEEeeeec------CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .+|...+.||+|+||.||++...      ++..+++|.+........+.+.+|+.++.+++|+||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            34677789999999999999732      345689999987666666789999999999999999999999999899999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||+++++|.+++...
T Consensus        85 v~e~~~~~~L~~~i~~~  101 (291)
T cd05094          85 VFEYMKHGDLNKFLRAH  101 (291)
T ss_pred             EEecCCCCcHHHHHHhc
Confidence            99999999999999753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=98.90  E-value=5.5e-09  Score=103.82  Aligned_cols=91  Identities=33%  Similarity=0.562  Sum_probs=76.6

Q ss_pred             CCcccccccccCCceeEEeeeec-CCc--EEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGK--AIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~--~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...+.||+|+||.||++... ++.  .+++|.++.. +......|.+|+.++.++ +|+||+++.+++...+..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            46777889999999999999853 444  4688887653 334567899999999999 899999999999988899999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++|+|.++++..
T Consensus        87 ~e~~~~~~L~~~l~~~  102 (303)
T cd05088          87 IEYAPHGNLLDFLRKS  102 (303)
T ss_pred             EEeCCCCcHHHHHHhc
Confidence            9999999999999743

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=98.90  E-value=8e-09  Score=103.50  Aligned_cols=85  Identities=26%  Similarity=0.402  Sum_probs=72.6

Q ss_pred             cccccCCceeEEeeeec-CCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++... +++.+|+|.+++.   .......+.+|..++..+ +||||+++.+++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999854 5789999999753   233456678899999888 799999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 ~~L~~~~~~~   90 (318)
T cd05570          81 GDLMFHIQRS   90 (318)
T ss_pred             CCHHHHHHHc
Confidence            9999998755

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=98.90  E-value=7.8e-09  Score=99.43  Aligned_cols=89  Identities=39%  Similarity=0.645  Sum_probs=77.2

Q ss_pred             ccccccccCCceeEEeeeecC-----CcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          394 SDENKLGQGGFGPVYKGTLAD-----GKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~-----g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ...+.||+|+||.||++....     +..|++|.+...... ..+.+..|+.++..++|+||+++++.+...+..++++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            456789999999999998543     378999999765433 56789999999999999999999999998899999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++++|.+++....
T Consensus        82 ~~~~~~l~~~~~~~~   96 (258)
T smart00219       82 YMEGGDLLDYLRKNR   96 (258)
T ss_pred             ccCCCCHHHHHHhhh
Confidence            999999999997644

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=98.90  E-value=7.5e-09  Score=99.81  Aligned_cols=85  Identities=34%  Similarity=0.523  Sum_probs=73.5

Q ss_pred             cccccCCceeEEeeeecC--C--cEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLAD--G--KAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~--g--~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|++|.||+|....  +  ..|++|.++.... ...+.|.+|+.++.+++||||+++++.+.. ...++++||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999998532  3  3689999987655 567789999999999999999999999887 888999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++.+..
T Consensus        80 ~~L~~~l~~~~   90 (257)
T cd05040          80 GSLLDRLRKDA   90 (257)
T ss_pred             CcHHHHHHhcc
Confidence            99999997754

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=98.90  E-value=5.5e-09  Score=100.57  Aligned_cols=90  Identities=26%  Similarity=0.430  Sum_probs=77.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||++... +|..+++|.+...  +....+.+.+|+.+++.++|+||+++++.+...+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4667889999999999999954 5889999998643  223456788999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~L~~~~~~~   93 (257)
T cd08225          81 CDGGDLMKRINRQ   93 (257)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=98.90  E-value=7.7e-09  Score=103.54  Aligned_cols=85  Identities=24%  Similarity=0.371  Sum_probs=69.8

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+++.||+|.++..   .....+.+..|..++..+ +||||+++++.+...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3699999999999985 45789999999743   223345566777777654 899999999999989999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~~~~~   90 (316)
T cd05592          81 GDLMFHIQSS   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999998654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=98.90  E-value=7.6e-09  Score=103.89  Aligned_cols=90  Identities=22%  Similarity=0.297  Sum_probs=74.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCC-CccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHK-NLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~  466 (495)
                      +|...+.||+|+||.||++... .++.||||.++..   .....+.+..|..++..++|+ +|+++.+++...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            3667889999999999999854 5789999999753   234456788999999999765 5888888888888999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~~g~L~~~~~~~   95 (324)
T cd05587          81 EYVNGGDLMYHIQQV   95 (324)
T ss_pred             cCCCCCcHHHHHHHc
Confidence            999999999998654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=98.90  E-value=3.7e-09  Score=102.09  Aligned_cols=90  Identities=23%  Similarity=0.344  Sum_probs=78.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +|...++||+|+||.||++... ++..+++|.+....   ....+.+.+|+.++.+++||||+++.+.+..+...++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            4667889999999999999854 58899999997532   2446789999999999999999999999988899999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++++|.+++...
T Consensus        81 ~~~~~~L~~~l~~~   94 (258)
T cd05578          81 LLLGGDLRYHLSQK   94 (258)
T ss_pred             CCCCCCHHHHHHhc
Confidence            99999999999765

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=98.89  E-value=6.1e-09  Score=111.30  Aligned_cols=102  Identities=25%  Similarity=0.414  Sum_probs=83.3

Q ss_pred             CCChHHHHHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEE
Q 011025          380 LFPLRLALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCL  457 (495)
Q Consensus       380 ~~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  457 (495)
                      ..+++.+..+++-|...++||+|.+|.||+++ ..+|+.+|||++..... ..++...|..++..+ .|||++.+.|+..
T Consensus         8 ~~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen    8 DIDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-EEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             ccchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-ccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            34555666778888999999999999999998 67899999999975432 235666777788777 7999999999986


Q ss_pred             e-----CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          458 E-----GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       458 ~-----~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .     ++++|||||||.+||.-|++++-.
T Consensus        87 k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~  116 (953)
T KOG0587|consen   87 KKDPGNGDQLWLVMEFCGGGSVTDLVKNTK  116 (953)
T ss_pred             EecCCCCCeEEEEeeccCCccHHHHHhhhc
Confidence            4     578999999999999999987544

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=98.89  E-value=1.2e-08  Score=100.94  Aligned_cols=91  Identities=27%  Similarity=0.402  Sum_probs=78.5

Q ss_pred             ccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ..+||+|+||.||++.. .+++.|+||.+.....+....+.+|+.++..++|+||+++++.+..++..++++||+++++|
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            35799999999999985 56889999998755555567799999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHH
Q 011025          475 DVHLFGLSLSLS  486 (495)
Q Consensus       475 ~~~L~~~~~~~~  486 (495)
                      .+++........
T Consensus       105 ~~~~~~~~~~~~  116 (292)
T cd06657         105 TDIVTHTRMNEE  116 (292)
T ss_pred             HHHHhcCCCCHH
Confidence            999876554443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=98.89  E-value=1.2e-08  Score=99.05  Aligned_cols=89  Identities=33%  Similarity=0.570  Sum_probs=75.5

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCCh---------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG---------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~---------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      |.....||+|+||.||+|.. .+++.+++|.+.....         +..+.+.+|+.++.+++||||+++++.+...+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45677899999999999984 4678999998864321         1235688999999999999999999999998999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++++||+++++|.+++...
T Consensus        82 ~lv~e~~~~~~L~~~l~~~  100 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNY  100 (267)
T ss_pred             EEEEEecCCCCHHHHHHhc
Confidence            9999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=98.89  E-value=6.1e-09  Score=101.65  Aligned_cols=92  Identities=29%  Similarity=0.457  Sum_probs=78.7

Q ss_pred             cCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...+.||+|+||.||+|...      .+..|++|.+.... .....++.+|+.++..++|+||+++++++......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            356778899999999999999853      23689999987543 34456899999999999999999999999988999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.+++...
T Consensus        85 ~~v~e~~~~~~L~~~l~~~  103 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSR  103 (277)
T ss_pred             EEEEecCCCCCHHHHHHhc
Confidence            9999999999999999753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=98.89  E-value=1.3e-08  Score=98.51  Aligned_cols=91  Identities=22%  Similarity=0.388  Sum_probs=79.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|+..+.||+|+||.||++.. .++..+++|.+.... ......+.+|+.++..++|+||+++.+.+..++..++++||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            3677889999999999999984 467899999997432 33567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.++++..
T Consensus        81 ~~~~~l~~~~~~~   93 (267)
T cd06610          81 LSGGSLLDIMKSS   93 (267)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999753

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=98.89  E-value=9.9e-09  Score=101.75  Aligned_cols=91  Identities=27%  Similarity=0.421  Sum_probs=76.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +.|...++||+|+||.||++.. .+++.||+|.++... ......+.+|+.++.+++||||+++++++..+...++|+||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            4577788999999999999985 357899999987442 23345678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ ++|.+++....
T Consensus        86 ~~-~~l~~~l~~~~   98 (301)
T cd07873          86 LD-KDLKQYLDDCG   98 (301)
T ss_pred             cc-cCHHHHHHhcC
Confidence            97 69999987643

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=98.88  E-value=1.6e-08  Score=99.26  Aligned_cols=95  Identities=37%  Similarity=0.561  Sum_probs=77.3

Q ss_pred             cccccccccCCceeEEeeee-----cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLL  464 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  464 (495)
                      +...+.||+|+||.||.+.+     .++..||+|.++... ......|.+|+.++.+++||||+++.+++...  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            36678999999999987653     357789999997543 34567899999999999999999999987653  45799


Q ss_pred             EEecCCCCCHHHHHhcCCCCHHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      ++||+++|+|.+++......+..
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~  108 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQ  108 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHH
Confidence            99999999999999876655543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=98.88  E-value=1e-08  Score=100.46  Aligned_cols=89  Identities=25%  Similarity=0.410  Sum_probs=77.3

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      |...++||+|+||.||++.. .+|..|++|.+....  ......+.+|+.++.+++||||+++++++..+...++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence            56778899999999999985 468899999997543  333567999999999999999999999999899999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                       +++|.+++....
T Consensus        82 -~~~L~~~~~~~~   93 (286)
T cd07832          82 -PSDLSEVLRDEE   93 (286)
T ss_pred             -CCCHHHHHHhcC
Confidence             999999987543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=98.88  E-value=5.6e-09  Score=103.29  Aligned_cols=93  Identities=29%  Similarity=0.502  Sum_probs=78.3

Q ss_pred             cCCcccccccccCCceeEEeeeec-----------------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccc
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-----------------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVR  451 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-----------------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~  451 (495)
                      .++|+..++||+|+||.||++...                 ++..||+|.+... ......+|.+|+.++.+++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            346788899999999999987421                 2446899999754 3345678999999999999999999


Q ss_pred             eEEEEEeCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          452 LLGCCLEGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       452 l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++++...+..++++||+++|+|.+++....
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  114 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHE  114 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcC
Confidence            9999998899999999999999999997643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=98.88  E-value=5.1e-09  Score=101.87  Aligned_cols=93  Identities=26%  Similarity=0.470  Sum_probs=77.5

Q ss_pred             HhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC------
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG------  459 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~------  459 (495)
                      .+++.|...++||+|+||.||+|.. ..++.|++|.+.... .....+.+|+.++.++ +|+||+++.+.+...      
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            3556788888999999999999985 458899999987543 3446788999999998 799999999998753      


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ...++++||+++|+|.+++...
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~  103 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNT  103 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhc
Confidence            3579999999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=98.88  E-value=5.4e-09  Score=102.59  Aligned_cols=95  Identities=24%  Similarity=0.371  Sum_probs=78.2

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe---
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE---  458 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~---  458 (495)
                      +.+..+.++|...+.||+|+||.||++.. .+++.+++|.++... ....++.+|+.++.++ +||||+++++.+..   
T Consensus        11 ~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   89 (286)
T cd06638          11 DSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDV   89 (286)
T ss_pred             ecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeeeccc
Confidence            44455678899999999999999999985 468899999886432 2235688999999999 69999999998753   


Q ss_pred             --CCEEEEEEecCCCCCHHHHHh
Q 011025          459 --GQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       459 --~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                        ++..++||||+++|+|.++++
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~  112 (286)
T cd06638          90 KNGDQLWLVLELCNGGSVTDLVK  112 (286)
T ss_pred             CCCCeEEEEEeecCCCCHHHHHH
Confidence              356899999999999999886

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=98.88  E-value=1.1e-08  Score=99.04  Aligned_cols=86  Identities=31%  Similarity=0.519  Sum_probs=71.0

Q ss_pred             cccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEEEEecCC
Q 011025          397 NKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLLIYEYMP  470 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey~~  470 (495)
                      +.||+|+||.||+|...    .+..|++|.+... ..+..+.+.+|+.+++.++||||+++++.+.. +...++++||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999842    2357999998643 34556789999999999999999999998764 445789999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +|+|.+++....
T Consensus        81 ~~~L~~~~~~~~   92 (262)
T cd05058          81 HGDLRNFIRSET   92 (262)
T ss_pred             CCCHHHHHHhcC
Confidence            999999997644

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=98.88  E-value=7.7e-09  Score=100.51  Aligned_cols=88  Identities=27%  Similarity=0.529  Sum_probs=73.3

Q ss_pred             cccccccccCCceeEEeeeecC----CcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE-----
Q 011025          393 FSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE-----  461 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  461 (495)
                      |...++||+|+||.||+|....    +..||+|.++..  +.....++.+|+..+..++||||+++++.+...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            4567889999999999998532    367999999743  33446789999999999999999999999876544     


Q ss_pred             -EEEEEecCCCCCHHHHHhc
Q 011025          462 -LLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 -~~lv~Ey~~~GsL~~~L~~  480 (495)
                       .++++||+++|+|..++..
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~  100 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLY  100 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHH
Confidence             6999999999999999854

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=98.88  E-value=8.9e-09  Score=99.71  Aligned_cols=90  Identities=24%  Similarity=0.313  Sum_probs=79.1

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|...+.||+|+||.||++... +++.+++|.+.... .+...++.+|+.++.+++||||+++.+.+......++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            4666789999999999999864 68899999997653 345678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++++|.+++...
T Consensus        82 ~~~~L~~~~~~~   93 (265)
T cd06605          82 DGGSLDKILKEV   93 (265)
T ss_pred             CCCcHHHHHHHc
Confidence            999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=98.88  E-value=9e-09  Score=103.40  Aligned_cols=89  Identities=22%  Similarity=0.306  Sum_probs=73.8

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEe
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      |...+.||+|+||.||++.. .+|+.||+|.+++.   .....+.+..|..++..+. |++|+++.+++...+..++|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            56678999999999999984 46889999999753   2234566888999998885 5778889888888889999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++|+|.+++...
T Consensus        82 y~~~g~L~~~i~~~   95 (323)
T cd05615          82 YVNGGDLMYHIQQV   95 (323)
T ss_pred             CCCCCcHHHHHHHc
Confidence            99999999998753

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=98.88  E-value=5.6e-09  Score=103.90  Aligned_cols=92  Identities=27%  Similarity=0.460  Sum_probs=78.2

Q ss_pred             cCCcccccccccCCceeEEeeeec--------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA--------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~--------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      .++|...+.||+|+||.||++...        .+..+|+|.++.. ......++.+|+.++.++ +||||+++.+++...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            356888999999999999998731        2346999999754 334566789999999999 799999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +..++|+||+++|+|.++|...
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~  118 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRAR  118 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhc
Confidence            9999999999999999999754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=98.88  E-value=7.1e-09  Score=102.18  Aligned_cols=93  Identities=27%  Similarity=0.512  Sum_probs=78.9

Q ss_pred             HhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      ...++|...+.||+|+||.||++...      ....+++|.+... ..+...++.+|+.++.++ +|+||+++++++..+
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34456788899999999999999852      2367999999754 344567799999999999 899999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHhc
Q 011025          460 QELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      +..++++||+++|+|.+++..
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~  109 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRA  109 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHh
Confidence            999999999999999999964

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=98.88  E-value=1e-08  Score=100.39  Aligned_cols=90  Identities=30%  Similarity=0.516  Sum_probs=76.5

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +|+..++||+|++|.||+|.. .+|..|+||.++.... ...+.+.+|+.++.+++|+||+++++.+...+..++|+||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            467788999999999999995 4688999999975432 33567789999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      + |+|.+++....
T Consensus        81 ~-~~l~~~~~~~~   92 (284)
T cd07836          81 D-KDLKKYMDTHG   92 (284)
T ss_pred             C-ccHHHHHHhcC
Confidence            8 58999886543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=98.88  E-value=1.3e-08  Score=102.28  Aligned_cols=86  Identities=29%  Similarity=0.404  Sum_probs=69.9

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHH-HHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVN-LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+|+.||+|.+....   .....++..|.. ++..++||||+++.+.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3699999999999995 468999999997432   222345555654 56789999999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++....
T Consensus        81 g~L~~~l~~~~   91 (323)
T cd05575          81 GELFFHLQRER   91 (323)
T ss_pred             CCHHHHHHhcC
Confidence            99999987543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=98.87  E-value=5.5e-09  Score=101.71  Aligned_cols=104  Identities=28%  Similarity=0.500  Sum_probs=83.5

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh-hh-HHHHHHHHHHHHcCCCCC-ccceEEEEEeCC------
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG-QG-LQEFKNEVNLIAKLQHKN-LVRLLGCCLEGQ------  460 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~-~~-~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~------  460 (495)
                      ..|...++||+|.||.||+|. ..+|+.||+|.++.... ++ -..-.+|+.++.+++|+| ||+|.+++...+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            345667789999999999998 56789999999985533 22 244689999999999999 999999998876      


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCC---C---HHHHHHHHHhC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSL---S---LSIKCYLLYIL  495 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~---~---~~~~~~l~~~L  495 (495)
                      .+++|+||+ .-+|..|+.....   .   ..++.+++|+|
T Consensus        91 ~l~lvfe~~-d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll  130 (323)
T KOG0594|consen   91 KLYLVFEFL-DRDLKKYMDSLPKKPQGLPPRLIKSFMRQLL  130 (323)
T ss_pred             eEEEEEEee-cccHHHHHHhccccccCCCHHHHHHHHHHHH
Confidence            788999999 6789999987552   1   23777777764

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=98.87  E-value=8.7e-09  Score=105.59  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=74.4

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-----EEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-----ELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  463 (495)
                      +|+..++||+|+||.||++.. .+|+.||+|.+...  .....+.+.+|+.++..++|+||+++++++...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            367788999999999999984 57899999999743  2334567899999999999999999999987765     789


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||++ ++|.+++...
T Consensus        81 lv~e~~~-~~l~~~~~~~   97 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSP   97 (372)
T ss_pred             EEeeccc-cCHHHHHhcC
Confidence            9999996 6888888654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=98.87  E-value=1.2e-08  Score=102.78  Aligned_cols=85  Identities=20%  Similarity=0.341  Sum_probs=72.6

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+++.+|+|.+++..   ....+.+.+|+.++.++ +||||+++.+++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            3699999999999985 467899999997532   23456788999999888 699999999999989999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|..++...
T Consensus        81 ~~L~~~~~~~   90 (327)
T cd05617          81 GDLMFHMQRQ   90 (327)
T ss_pred             CcHHHHHHHc
Confidence            9999988643

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.87  E-value=1.2e-08  Score=112.36  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=79.3

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++... .++.||||+++...   ......+..|+.++..++|+||+++++.+......+|||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            56788899999999999999954 68899999997532   233567899999999999999999999999899999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.++|...
T Consensus        84 Ey~~g~~L~~li~~~   98 (669)
T cd05610          84 EYLIGGDVKSLLHIY   98 (669)
T ss_pred             eCCCCCCHHHHHHhc
Confidence            999999999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=98.87  E-value=1.3e-08  Score=102.44  Aligned_cols=90  Identities=26%  Similarity=0.388  Sum_probs=75.4

Q ss_pred             CcccccccccCCceeEEeeee----cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  462 (495)
                      +|...++||+|+||.||++..    ..++.||+|.+.+..    ....+.+.+|+.++..+ +|+||+++.+++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            366788999999999998874    357899999997431    23345688999999999 599999999999888899


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.+++...
T Consensus        81 ~lv~e~~~~g~L~~~l~~~   99 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQR   99 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHc
Confidence            9999999999999999654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=98.86  E-value=1.3e-08  Score=102.28  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=74.3

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +|...++||+|+||.||++.. .+++.+|+|.+++..   ......+..|..++..+ +|++|+++.+++...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            466788999999999999985 457899999997532   23345677888888877 6899999999999899999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        81 E~~~~g~L~~~~~~~   95 (323)
T cd05616          81 EYVNGGDLMYQIQQV   95 (323)
T ss_pred             cCCCCCCHHHHHHHc
Confidence            999999999998653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=98.86  E-value=1.1e-08  Score=100.79  Aligned_cols=98  Identities=29%  Similarity=0.394  Sum_probs=80.9

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      +....+..++++|...+.||+|+||.||++.. .+++.+++|.+.... .....+.+|+.++.++ +|||++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            34455566788999999999999999999985 568899999987532 2245678899999998 89999999999875


Q ss_pred             C-----CEEEEEEecCCCCCHHHHHh
Q 011025          459 G-----QELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       459 ~-----~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      .     +..++|+||+++|+|.++++
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~  116 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVK  116 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHH
Confidence            3     35799999999999999886

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=98.86  E-value=1.3e-08  Score=97.85  Aligned_cols=85  Identities=41%  Similarity=0.657  Sum_probs=75.0

Q ss_pred             cccccCCceeEEeeeecC----CcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLAD----GKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++....    +..+++|.++..... ..+.+.+|+.++..++|+||+++++++......++++||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            469999999999999643    788999999865433 367899999999999999999999999988999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 ~~L~~~l~~~   90 (262)
T cd00192          81 GDLLDYLRKS   90 (262)
T ss_pred             CcHHHHHhhc
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=98.86  E-value=1.4e-08  Score=99.01  Aligned_cols=85  Identities=33%  Similarity=0.575  Sum_probs=72.1

Q ss_pred             cccccCCceeEEeeeecC-Cc--EEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLAD-GK--AIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~-g~--~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||+|...+ +.  .+++|.++.. .....+.+.+|+.++.++ +||||+++++.+...+..++++||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            468999999999999643 43  5788988754 344567899999999999 899999999999988889999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 ~~L~~~i~~~   90 (270)
T cd05047          81 GNLLDFLRKS   90 (270)
T ss_pred             CcHHHHHHhc
Confidence            9999999753

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=98.86  E-value=1.1e-08  Score=101.71  Aligned_cols=90  Identities=29%  Similarity=0.476  Sum_probs=75.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ..|...++||+|+||.||+|.. .+++.|++|.+...   ..+..+++.+|+.++..++||||+++.+++..++..++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            4577788999999999999985 46889999998643   2344567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||++ |+|.+++...
T Consensus        95 e~~~-g~l~~~~~~~  108 (307)
T cd06607          95 EYCL-GSASDILEVH  108 (307)
T ss_pred             HhhC-CCHHHHHHHc
Confidence            9996 6787777543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=98.86  E-value=1.2e-08  Score=113.96  Aligned_cols=92  Identities=25%  Similarity=0.392  Sum_probs=77.7

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      ..++|...++||+|+||.||++.. ..+..+++|.+...  .......|..|+.++..++|||||++++++..  ....+
T Consensus        11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly   90 (1021)
T PTZ00266         11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY   90 (1021)
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence            346788899999999999999984 45778999998743  33446789999999999999999999998754  35689


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      |||||+++|+|.++|..
T Consensus        91 IVMEY~~gGSL~~lL~k  107 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQK  107 (1021)
T ss_pred             EEEeCCCCCcHHHHHHH
Confidence            99999999999999975

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=98.86  E-value=8.9e-09  Score=101.93  Aligned_cols=91  Identities=30%  Similarity=0.505  Sum_probs=76.8

Q ss_pred             CCcccccccccCCceeEEeeeecC-Cc--EEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-GK--AIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-g~--~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||.||+|...+ +.  .+++|.++.. .....+.|.+|+.++.++ +||||+++.+++...+..+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            467788899999999999998643 32  4788888753 344567899999999999 799999999999888889999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++|+|.++++..
T Consensus        82 ~e~~~~~~L~~~l~~~   97 (297)
T cd05089          82 IEYAPYGNLLDFLRKS   97 (297)
T ss_pred             EEecCCCcHHHHHHhc
Confidence            9999999999999753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=98.85  E-value=1.2e-08  Score=100.18  Aligned_cols=92  Identities=33%  Similarity=0.486  Sum_probs=73.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...+.||+|+||.||+|.. .+++    .+++|.+.... .....++..|+..+++++||||++++|++. +...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence            3566778999999999999985 3444    47888886443 234567889999999999999999999875 445788


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      ++||+++|+|.+++.....
T Consensus        86 i~e~~~~gsL~~~l~~~~~  104 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRD  104 (279)
T ss_pred             EEEeCCCCcHHHHHHhccc
Confidence            9999999999999976543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=98.85  E-value=1.6e-08  Score=99.16  Aligned_cols=91  Identities=23%  Similarity=0.412  Sum_probs=77.2

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|....+||+|+||.||++... +|+.|++|++....  ....+.+.+|+.++.+++|+|++++++.+..+...++|+|
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            35777889999999999999864 58899999986432  2234568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |++++.|..++...
T Consensus        81 ~~~~~~l~~~~~~~   94 (286)
T cd07847          81 YCDHTVLNELEKNP   94 (286)
T ss_pred             ccCccHHHHHHhCC
Confidence            99999998887643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=98.85  E-value=1.6e-08  Score=97.68  Aligned_cols=83  Identities=30%  Similarity=0.472  Sum_probs=70.1

Q ss_pred             ccccCCceeEEeeee---cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          398 KLGQGGFGPVYKGTL---ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~---~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      +||+|+||.||+|..   .++..+++|+++...  ....++|.+|+.++..++||||++++|.+. .+..++|+||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999964   357889999987442  344678999999999999999999999875 45678999999999


Q ss_pred             CHHHHHhcC
Q 011025          473 SLDVHLFGL  481 (495)
Q Consensus       473 sL~~~L~~~  481 (495)
                      +|.+++...
T Consensus        81 ~L~~~l~~~   89 (257)
T cd05116          81 PLNKFLQKN   89 (257)
T ss_pred             cHHHHHHhc
Confidence            999999654

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=98.85  E-value=1.3e-08  Score=100.18  Aligned_cols=91  Identities=25%  Similarity=0.431  Sum_probs=76.7

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|... +++.|++|.+..... .....+.+|+.++.+++|+||+++++++...+..++|+||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            56778889999999999999854 688999999975322 2234578899999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ ++|.+++....
T Consensus        85 ~~-~~L~~~~~~~~   97 (291)
T cd07844          85 LD-TDLKQYMDDCG   97 (291)
T ss_pred             CC-CCHHHHHHhCC
Confidence            97 59999987543

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=98.85  E-value=2.2e-08  Score=98.51  Aligned_cols=94  Identities=26%  Similarity=0.384  Sum_probs=80.2

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      |...++||+|++|.||++.. .+++.+++|.+........+.+.+|+.++..++||||+++++.+..++..++++||+++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            44457899999999999984 46889999998765555567789999999999999999999999989999999999999


Q ss_pred             CCHHHHHhcCCCCHH
Q 011025          472 KSLDVHLFGLSLSLS  486 (495)
Q Consensus       472 GsL~~~L~~~~~~~~  486 (495)
                      ++|.+++........
T Consensus       101 ~~L~~~~~~~~~~~~  115 (285)
T cd06648         101 GALTDIVTHTRMNEE  115 (285)
T ss_pred             CCHHHHHHhCCCCHH
Confidence            999999987544433

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=98.85  E-value=2.3e-08  Score=97.15  Aligned_cols=90  Identities=29%  Similarity=0.543  Sum_probs=75.4

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-----hhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      +|...++||+|+||.||++.. ..+..+++|.+....     .+....+.+|+.++..++||||+++.+.+..  ....+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            677889999999999999984 468899999886331     2345678999999999999999999998765  35678


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +++||+++++|.+++...
T Consensus        83 l~~e~~~~~~L~~~l~~~  100 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAY  100 (266)
T ss_pred             EEEeCCCCCcHHHHHHHc
Confidence            999999999999999753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=98.85  E-value=1.3e-08  Score=102.56  Aligned_cols=89  Identities=18%  Similarity=0.386  Sum_probs=72.7

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~  463 (495)
                      +|...++||+|+||.||+|.. .+++.||||.+...  .......+.+|+.++.+++||||+++.+++...     ...+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            366778999999999999984 46899999998743  223445789999999999999999999987643     2479


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||++ ++|.+++...
T Consensus        81 lv~e~~~-~~L~~~l~~~   97 (338)
T cd07859          81 VVFELME-SDLHQVIKAN   97 (338)
T ss_pred             EEEecCC-CCHHHHHHhc
Confidence            9999995 7899988654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=98.85  E-value=1.2e-08  Score=98.43  Aligned_cols=93  Identities=32%  Similarity=0.520  Sum_probs=77.2

Q ss_pred             ccccccccCCceeEEeeeec-CCcEEEEEEcccCChhh--HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQG--LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~--~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ...++||+|+||.||++... +++.+|+|.+.......  .....+|+.++.+++||||++++++.......++++||++
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            45678999999999999954 56789999998765433  2345669999999999999999999999999999999999


Q ss_pred             CCCHHHHHh-cCCCCHH
Q 011025          471 NKSLDVHLF-GLSLSLS  486 (495)
Q Consensus       471 ~GsL~~~L~-~~~~~~~  486 (495)
                      +++|.++|. .......
T Consensus        82 ~~~L~~~l~~~~~~~~~   98 (260)
T PF00069_consen   82 GGSLQDYLQKNKPLSEE   98 (260)
T ss_dssp             TEBHHHHHHHHSSBBHH
T ss_pred             ccccccccccccccccc
Confidence            999999998 4444444

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=98.85  E-value=1.5e-08  Score=99.26  Aligned_cols=92  Identities=30%  Similarity=0.471  Sum_probs=76.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|.. ++++    .||+|.++.. ......++.+|+.++..++|+||+++++.+.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCcEE
Confidence            4677789999999999999984 4554    4899999754 34446789999999999999999999999875 45679


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      ++||+++|+|.++++....
T Consensus        86 ~~~~~~~g~l~~~l~~~~~  104 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKD  104 (279)
T ss_pred             EEEcCCCCCHHHHHhhccC
Confidence            9999999999999986543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=98.84  E-value=1.9e-08  Score=100.47  Aligned_cols=90  Identities=28%  Similarity=0.375  Sum_probs=78.6

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +|...+.||+|+||.||++... +++.+++|.+.....   ...+.+.+|+.++..++|+||+++++.+..+...++|+|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5777889999999999999854 588999999975432   245678999999999999999999999998999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++++|.+++...
T Consensus        82 ~~~~~~L~~~~~~~   95 (316)
T cd05574          82 YCPGGELFRLLQRQ   95 (316)
T ss_pred             ecCCCCHHHHHHhC
Confidence            99999999999753

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=98.84  E-value=1.5e-08  Score=98.19  Aligned_cols=89  Identities=29%  Similarity=0.409  Sum_probs=75.0

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      +++....+||+|+||.||++....+..+++|.+.... ...+.|.+|+.++.+++|+|++++.+++. .+..+++|||++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMG   83 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCC
Confidence            3467778999999999999997777789999887543 23467899999999999999999998874 456799999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.++++..
T Consensus        84 ~~~L~~~~~~~   94 (260)
T cd05069          84 KGSLLDFLKEG   94 (260)
T ss_pred             CCCHHHHHhhC
Confidence            99999999754

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=98.84  E-value=2.1e-08  Score=98.21  Aligned_cols=88  Identities=30%  Similarity=0.505  Sum_probs=75.0

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||+|.. .++..|++|.++...  ......+.+|+.++.+++||||+++++.+..+...++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            356678999999999999985 468899999986432  22346788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      ++ ++|.+++..
T Consensus        81 ~~-~~l~~~~~~   91 (285)
T cd07861          81 LS-MDLKKYLDS   91 (285)
T ss_pred             CC-CCHHHHHhc
Confidence            97 789998864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.84  E-value=1e-08  Score=109.17  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=78.8

Q ss_pred             HHHHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-  460 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-  460 (495)
                      +.....++|...++||+|+||.||++. ..+|+.||||.+...  +.+....+.+|+.++..++|+|++++.......+ 
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~  105 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDP  105 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccc
Confidence            334455789999999999999999998 457899999998643  3455677899999999999999999887664322 


Q ss_pred             -------EEEEEEecCCCCCHHHHHhc
Q 011025          461 -------ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       461 -------~~~lv~Ey~~~GsL~~~L~~  480 (495)
                             ..++|+||+++|+|.++|+.
T Consensus       106 ~~~~~~~~i~lV~Ey~~~gsL~~~l~~  132 (496)
T PTZ00283        106 RNPENVLMIALVLDYANAGDLRQEIKS  132 (496)
T ss_pred             cCcccceEEEEEEeCCCCCcHHHHHHH
Confidence                   36899999999999999975

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=98.84  E-value=1.9e-08  Score=101.12  Aligned_cols=86  Identities=26%  Similarity=0.337  Sum_probs=68.8

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHH-HHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEV-NLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~-~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +.||+|+||.||++.. .+++.+|+|.+....   ......+..|. .++..++||||+++.+.+...+..++|+||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            3699999999999985 457889999997432   12233445554 456788999999999999999999999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++....
T Consensus        81 ~~L~~~~~~~~   91 (325)
T cd05602          81 GELFYHLQRER   91 (325)
T ss_pred             CcHHHHHHhcC
Confidence            99999997543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=98.84  E-value=1e-08  Score=101.89  Aligned_cols=92  Identities=27%  Similarity=0.494  Sum_probs=77.9

Q ss_pred             cCCcccccccccCCceeEEeeee--------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~--------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      .++|...+.||+|+||.||++..        .++..|++|.+... ......++.+|+.++..+ +||||+++++.+...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45677789999999999999963        12457999998754 334567899999999999 899999999999988


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ...++++||+++|+|.++|...
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~  115 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRAR  115 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhc
Confidence            8999999999999999999764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=98.84  E-value=2.3e-08  Score=95.87  Aligned_cols=90  Identities=29%  Similarity=0.507  Sum_probs=78.9

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  466 (495)
                      +|...+.||+|++|.||+|... ++..|++|.+....  ....+.+.+|+.++++++|+||+++++.....  ...++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3566789999999999999964 68899999997553  34567899999999999999999999999887  8899999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++++|.+++...
T Consensus        81 e~~~~~~L~~~~~~~   95 (260)
T cd06606          81 EYVSGGSLSSLLKKF   95 (260)
T ss_pred             EecCCCcHHHHHHHc
Confidence            999999999999765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=98.84  E-value=7.7e-09  Score=101.40  Aligned_cols=90  Identities=22%  Similarity=0.385  Sum_probs=77.1

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||++... +++.+++|.+....  ....+.+.+|+.++..++||||+++++++..++..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5677889999999999999964 58899999986432  22356788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.++....
T Consensus        82 ~~~~~l~~~~~~~   94 (286)
T cd07846          82 VDHTVLDDLEKYP   94 (286)
T ss_pred             CCccHHHHHHhcc
Confidence            9999999887643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=98.83  E-value=1.5e-08  Score=99.64  Aligned_cols=89  Identities=21%  Similarity=0.318  Sum_probs=75.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  466 (495)
                      ++|...++||.|.+|.||++.. .+++.+++|.+.... ......+.+|+.+++.++||||+++++++...  ...++|+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3577788999999999999996 458899999997543 34457799999999999999999999988653  4679999


Q ss_pred             ecCCCCCHHHHHh
Q 011025          467 EYMPNKSLDVHLF  479 (495)
Q Consensus       467 Ey~~~GsL~~~L~  479 (495)
                      ||+++++|.+++.
T Consensus        81 e~~~~~~L~~~l~   93 (287)
T cd06621          81 EYCEGGSLDSIYK   93 (287)
T ss_pred             EecCCCCHHHHHH
Confidence            9999999999875

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=98.83  E-value=3e-08  Score=94.64  Aligned_cols=89  Identities=33%  Similarity=0.550  Sum_probs=79.8

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      |...+.||+|++|.||++... +++.+++|++.....+....+.+|+.++.+++|+|++++.+.+...+..++++||+++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~   81 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSG   81 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCC
Confidence            566788999999999999964 6889999999876555677899999999999999999999999989999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      ++|.+++...
T Consensus        82 ~~L~~~~~~~   91 (253)
T cd05122          82 GSLKDLLKST   91 (253)
T ss_pred             CcHHHHHhhc
Confidence            9999999775

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=98.83  E-value=2e-08  Score=98.46  Aligned_cols=82  Identities=27%  Similarity=0.409  Sum_probs=69.5

Q ss_pred             cccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++.. .+|+.+|+|.+....   ......+..|+.++.+++||||+++.+.+..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            69999999999985 468999999996421   12234566799999999999999999999888999999999999999


Q ss_pred             HHHHhc
Q 011025          475 DVHLFG  480 (495)
Q Consensus       475 ~~~L~~  480 (495)
                      .+++..
T Consensus        81 ~~~~~~   86 (277)
T cd05607          81 KYHIYN   86 (277)
T ss_pred             HHHHHh
Confidence            998864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=98.83  E-value=9e-09  Score=102.81  Aligned_cols=92  Identities=28%  Similarity=0.494  Sum_probs=77.5

Q ss_pred             cCCcccccccccCCceeEEeeee--------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~--------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      .++|...++||+|+||.||++..        .....+++|.++.. ......++.+|+.++.++ +||||+++++++...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            35677889999999999999863        12457899998754 334567799999999999 699999999999988


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +..++++||+++|+|.+++...
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~  112 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRAR  112 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhc
Confidence            8899999999999999999753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=98.83  E-value=2.4e-08  Score=96.85  Aligned_cols=91  Identities=27%  Similarity=0.523  Sum_probs=76.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QEL  462 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  462 (495)
                      .+|...+.||+|+||.||++.. .++..+++|.+...     ..+....+.+|+.++++++|+||+++++.+...  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4678889999999999999984 46889999987532     234456899999999999999999999987654  457


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++++||.++++|.+++...
T Consensus        82 ~~v~e~~~~~~L~~~~~~~  100 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAY  100 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHc
Confidence            8999999999999998753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=98.83  E-value=2.8e-09  Score=108.78  Aligned_cols=90  Identities=24%  Similarity=0.420  Sum_probs=75.5

Q ss_pred             CCCCChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEE
Q 011025          378 FPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL  457 (495)
Q Consensus       378 ~~~~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  457 (495)
                      ....++++|       ++.+-||+|+-|.||.|++ .++.||||.++...       ..+|+.|.+|+|+||+.|.|+|.
T Consensus       118 ~WeiPFe~I-------sELeWlGSGaQGAVF~Grl-~netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCt  182 (904)
T KOG4721|consen  118 LWEIPFEEI-------SELEWLGSGAQGAVFLGRL-HNETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCT  182 (904)
T ss_pred             hccCCHHHh-------hhhhhhccCcccceeeeec-cCceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeec
Confidence            344455555       4456799999999999999 67899999887322       35788899999999999999999


Q ss_pred             eCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          458 EGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ...-++|||||++.|-|.+.|+..+
T Consensus       183 qsPcyCIiMEfCa~GqL~~VLka~~  207 (904)
T KOG4721|consen  183 QSPCYCIIMEFCAQGQLYEVLKAGR  207 (904)
T ss_pred             CCceeEEeeeccccccHHHHHhccC
Confidence            9999999999999999999998654

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=98.82  E-value=2.2e-08  Score=100.18  Aligned_cols=89  Identities=28%  Similarity=0.486  Sum_probs=74.8

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||++.. .++..+++|.+...   ..+....+.+|+.++++++|||++++++++..+...++|+||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            66678899999999999984 46889999998743   223456789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ |+|.+++....
T Consensus       107 ~~-g~l~~~~~~~~  119 (317)
T cd06635         107 CL-GSASDLLEVHK  119 (317)
T ss_pred             CC-CCHHHHHHHhc
Confidence            96 68888875443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=98.82  E-value=1.9e-08  Score=100.63  Aligned_cols=85  Identities=24%  Similarity=0.357  Sum_probs=71.1

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||++.. .+|+.||+|.++...   ......+..|..++..+ +||||+++++.+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4699999999999985 468899999997532   23345677788888764 899999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~i~~~   90 (316)
T cd05620          81 GDLMFHIQDK   90 (316)
T ss_pred             CcHHHHHHHc
Confidence            9999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=98.82  E-value=1.7e-08  Score=98.20  Aligned_cols=86  Identities=28%  Similarity=0.571  Sum_probs=70.7

Q ss_pred             ccccccccCCceeEEeeeecC-Cc--EEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------CEE
Q 011025          394 SDENKLGQGGFGPVYKGTLAD-GK--AIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------QEL  462 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~-g~--~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~  462 (495)
                      ...++||+|+||.||+|+... +.  .+|+|.++..  +....+.|.+|+.++..++|+||+++++.+...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            456789999999999999644 33  5899998753  345567899999999999999999999987542      246


Q ss_pred             EEEEecCCCCCHHHHHh
Q 011025          463 LLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~  479 (495)
                      ++++||+++|+|.+++.
T Consensus        82 ~~v~e~~~~~~l~~~~~   98 (272)
T cd05075          82 VVILPFMKHGDLHSFLL   98 (272)
T ss_pred             EEEEEeCCCCcHHHHHH
Confidence            89999999999999884

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-09  Score=108.14  Aligned_cols=91  Identities=23%  Similarity=0.426  Sum_probs=80.7

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .|+..+.||+|.||.||||.. ..++.||+|++... ....+++..+|+.++++++++||.+.+|....+..+|++|||+
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            456668899999999999994 46889999999854 4556788999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      .+|++.+.|....
T Consensus        94 ~gGsv~~lL~~~~  106 (467)
T KOG0201|consen   94 GGGSVLDLLKSGN  106 (467)
T ss_pred             cCcchhhhhccCC
Confidence            9999999997544

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.82  E-value=6.9e-09  Score=112.81  Aligned_cols=98  Identities=30%  Similarity=0.403  Sum_probs=82.7

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeeec----C----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEE
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTLA----D----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLG  454 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~~----~----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g  454 (495)
                      ..+...+++...+.||+|.||.|++|.+.    .    ...||||.++.. ...+.+.+..|+.+|..+ +|+||+.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            34445556666779999999999999842    1    347999999864 335678899999999999 6999999999


Q ss_pred             EEEeCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          455 CCLEGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       455 ~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|...++.++|.||+++|+|.+||+..+
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r  397 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKR  397 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhcc
Confidence            9999999999999999999999999876

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=98.81  E-value=1.5e-09  Score=102.75  Aligned_cols=92  Identities=25%  Similarity=0.438  Sum_probs=80.8

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      -|....+||+|.||.|||+. ...|+.||+|.++..  .+.++...|+.+|.+...|.+|+..|.+....++|+||||+.
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCG  111 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCG  111 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcC
Confidence            35667899999999999998 456999999999854  357889999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCH
Q 011025          471 NKSLDVHLFGLSLSL  485 (495)
Q Consensus       471 ~GsL~~~L~~~~~~~  485 (495)
                      -||..+.++-+++.+
T Consensus       112 AGSiSDI~R~R~K~L  126 (502)
T KOG0574|consen  112 AGSISDIMRARRKPL  126 (502)
T ss_pred             CCcHHHHHHHhcCCc
Confidence            999999998655443

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=98.81  E-value=2.8e-08  Score=95.98  Aligned_cols=85  Identities=36%  Similarity=0.579  Sum_probs=70.9

Q ss_pred             cccccCCceeEEeeeec--C--CcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLA--D--GKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~--~--g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||+|...  +  +..+++|.+..... ...+++.+|+.++..+.|+||+++++++. .+..++|+||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            46999999999999742  2  26899999985543 34568999999999999999999999875 5568999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.++|....
T Consensus        80 ~~L~~~l~~~~   90 (257)
T cd05060          80 GPLLKYLKKRR   90 (257)
T ss_pred             CcHHHHHHhCC
Confidence            99999997654

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=98.81  E-value=1.2e-08  Score=99.20  Aligned_cols=85  Identities=39%  Similarity=0.603  Sum_probs=72.6

Q ss_pred             cccccCCceeEEeeeecC-------CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          397 NKLGQGGFGPVYKGTLAD-------GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~-------g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +.||+|+||.||+|...+       +..+++|.+.... .....+|.+|+.+++.++||||+++++++...+..++++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998532       2578999886543 34567899999999999999999999999988889999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.++|...
T Consensus        81 ~~~~~L~~~l~~~   93 (269)
T cd05044          81 MEGGDLLSYLRDA   93 (269)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999753

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=98.80  E-value=3.9e-08  Score=94.27  Aligned_cols=90  Identities=30%  Similarity=0.541  Sum_probs=78.7

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|+..++||+|.+|.||++.. .+++.+++|.+.....  ...+.+.+|+.++.+++|+|++++++++..++..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            356678999999999999985 4678999999976543  4567899999999999999999999999988999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~L~~~~~~~   93 (254)
T cd06627          81 AENGSLRQIIKKF   93 (254)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999998754

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=98.80  E-value=3.3e-08  Score=96.03  Aligned_cols=88  Identities=26%  Similarity=0.486  Sum_probs=73.3

Q ss_pred             CcccccccccCCceeEEeeeecC--CcEEEEEEcccC----------ChhhHHHHHHHHHHHHc-CCCCCccceEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLAD--GKAIAVKRLSRT----------SGQGLQEFKNEVNLIAK-LQHKNLVRLLGCCLE  458 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~--g~~VaVK~l~~~----------~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~  458 (495)
                      +|+..+.||+|+||.||++....  ++.+++|.+...          ......++.+|+.++.+ ++||||+++++.+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36677889999999999999644  678999988532          22334568889988875 799999999999999


Q ss_pred             CCEEEEEEecCCCCCHHHHHh
Q 011025          459 GQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      .+..++++||+++++|.+++.
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~  101 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFN  101 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHH
Confidence            999999999999999999884

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=98.80  E-value=2.7e-08  Score=98.01  Aligned_cols=91  Identities=26%  Similarity=0.421  Sum_probs=76.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +.+|...++||+|+||.||+|.. .+++.+++|.++.... .....+.+|+.++..++|+||+++.+++..++..++|+|
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEe
Confidence            46788889999999999999984 4688999999975432 233467899999999999999999999998889999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |++ ++|.+++...
T Consensus        84 ~~~-~~l~~~~~~~   96 (291)
T cd07870          84 YMH-TDLAQYMIQH   96 (291)
T ss_pred             ccc-CCHHHHHHhC
Confidence            995 7887777543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=98.80  E-value=3.4e-08  Score=95.31  Aligned_cols=89  Identities=33%  Similarity=0.499  Sum_probs=75.2

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey~  469 (495)
                      ++|...+.||+|+||.||++.. .|..|++|.++...  ..+.|.+|+.++.+++|+|++++.++... ++..++++||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECC
Confidence            3567788999999999999986 47889999986432  34679999999999999999999998654 45689999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++|+|.+++....
T Consensus        83 ~~~~L~~~~~~~~   95 (256)
T cd05082          83 AKGSLVDYLRSRG   95 (256)
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999997643

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=98.79  E-value=2.9e-08  Score=97.09  Aligned_cols=84  Identities=30%  Similarity=0.480  Sum_probs=71.7

Q ss_pred             cccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++.. .+|+.+++|.+....   ......+.+|+.++..++||||+++.+.+...+..++|+||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999984 468899999987432   22345678999999999999999999999888999999999999999


Q ss_pred             HHHHhcCC
Q 011025          475 DVHLFGLS  482 (495)
Q Consensus       475 ~~~L~~~~  482 (495)
                      .+++....
T Consensus        81 ~~~l~~~~   88 (277)
T cd05577          81 KYHIYNVG   88 (277)
T ss_pred             HHHHHHcC
Confidence            99997543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=98.79  E-value=2.9e-08  Score=95.72  Aligned_cols=88  Identities=27%  Similarity=0.463  Sum_probs=74.1

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEEEEe
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLLIYE  467 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~E  467 (495)
                      |...+.||+|+||.||++.. .++..+++|.+...  +....+.+.+|+.++.+++|+||+++++.+..  +...++++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e   81 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVME   81 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEeh
Confidence            56678899999999999984 46789999998743  34456778999999999999999999997764  456799999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++++|.+++..
T Consensus        82 ~~~~~~L~~~l~~   94 (265)
T cd08217          82 YCEGGDLAQLIQK   94 (265)
T ss_pred             hccCCCHHHHHHH
Confidence            9999999999965

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=98.79  E-value=3e-08  Score=95.97  Aligned_cols=84  Identities=20%  Similarity=0.295  Sum_probs=73.0

Q ss_pred             cccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++... +++.+++|.+....   ....+.+.+|+.++..++||||+++++.+..+...++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999964 48899999997532   23456799999999999999999999999888899999999999999


Q ss_pred             HHHHhcCC
Q 011025          475 DVHLFGLS  482 (495)
Q Consensus       475 ~~~L~~~~  482 (495)
                      .+++....
T Consensus        81 ~~~l~~~~   88 (262)
T cd05572          81 WTILRDRG   88 (262)
T ss_pred             HHHHhhcC
Confidence            99997643

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.79  E-value=1.1e-08  Score=108.08  Aligned_cols=93  Identities=23%  Similarity=0.405  Sum_probs=69.9

Q ss_pred             hcCCcccccccccCCceeEEeeee-----------------cCCcEEEEEEcccCChhhHHHH--------------HHH
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-----------------ADGKAIAVKRLSRTSGQGLQEF--------------KNE  437 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-----------------~~g~~VaVK~l~~~~~~~~~~f--------------~~E  437 (495)
                      ..++|...++||+|+||.||+|..                 ..++.||||++........++|              ..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999963                 2356799999975433333334              346


Q ss_pred             HHHHHcCCCCCc-----cceEEEEEe--------CCEEEEEEecCCCCCHHHHHhcC
Q 011025          438 VNLIAKLQHKNL-----VRLLGCCLE--------GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       438 ~~~l~~l~H~ni-----v~l~g~~~~--------~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +.++.+++|.|+     ++++|++..        .++.+||+||+++|+|.++|+..
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~  279 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGK  279 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhc
Confidence            777777776654     677777653        35689999999999999999853

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=98.79  E-value=2.1e-08  Score=97.33  Aligned_cols=92  Identities=26%  Similarity=0.449  Sum_probs=78.1

Q ss_pred             HhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC-----
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ-----  460 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~-----  460 (495)
                      .++++|...+.||+|+||.||++... +++.+++|.+..... ..+.|.+|+.++.++ +|+||+++++.+....     
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            35678899999999999999999953 578899999875433 346799999999999 7999999999987644     


Q ss_pred             -EEEEEEecCCCCCHHHHHhc
Q 011025          461 -ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       461 -~~~lv~Ey~~~GsL~~~L~~  480 (495)
                       ..++|+||+++++|.+++..
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~  102 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKG  102 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHH
Confidence             37999999999999999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=98.79  E-value=1.6e-08  Score=99.08  Aligned_cols=87  Identities=36%  Similarity=0.548  Sum_probs=74.8

Q ss_pred             cccccccccCCceeEEeeeec------CCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      |...++||+|+||.||+|...      .+..||+|.++.... ...+.|.+|+.++.+++||||+++++++...+..+++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~   86 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI   86 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence            556778999999999999852      246899999975432 3356789999999999999999999999998899999


Q ss_pred             EecCCCCCHHHHHh
Q 011025          466 YEYMPNKSLDVHLF  479 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~  479 (495)
                      +||+++++|.+++.
T Consensus        87 ~e~~~~~~l~~~l~  100 (283)
T cd05091          87 FSYCSHSDLHEFLV  100 (283)
T ss_pred             EEcCCCCcHHHHHH
Confidence            99999999999985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=98.79  E-value=1.6e-08  Score=98.50  Aligned_cols=90  Identities=22%  Similarity=0.364  Sum_probs=78.4

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +|...+.||+|+||.||++.. .+++.+++|.+...   ..+....+.+|..++.+++ |+||+++.+++..++..++|+
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            577788999999999999985 46899999998753   2334567899999999998 999999999998889999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++++|.+++...
T Consensus        82 e~~~~~~L~~~l~~~   96 (280)
T cd05581          82 EYAPNGELLQYIRKY   96 (280)
T ss_pred             cCCCCCcHHHHHHHc
Confidence            999999999999765

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=98.79  E-value=2.6e-08  Score=98.92  Aligned_cols=91  Identities=34%  Similarity=0.594  Sum_probs=74.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...+.||+|+||.||+|.. .+|.    .|++|.+.... .....++.+|+.++..++||||++++|.+... ...+
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            4567778999999999999984 3444    47889887543 33345789999999999999999999998754 4679


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      ++||+++|+|.+++..+.
T Consensus        86 v~e~~~~g~l~~~~~~~~  103 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHK  103 (303)
T ss_pred             eehhcCCCCHHHHHHhcc
Confidence            999999999999998654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=98.79  E-value=4.1e-08  Score=94.19  Aligned_cols=90  Identities=24%  Similarity=0.424  Sum_probs=78.5

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||++... ++..+++|.+....  .....++.+|++++.+++|+|++++.+....++..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3666788999999999999953 58899999997543  35567899999999999999999999999888999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~~~~L~~~l~~~   93 (258)
T cd08215          81 ADGGDLSQKIKKQ   93 (258)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.79  E-value=2.7e-08  Score=100.70  Aligned_cols=87  Identities=18%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             HHhcCCcccccccccCCceeEEeeeec--CCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLA--DGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~--~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      ....+.|...++||+|+||.||++...  +++.||||.+...     .....+.|.+|+.++.+++|+|++..+..   .
T Consensus        14 ~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~   90 (365)
T PRK09188         14 PALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---T   90 (365)
T ss_pred             ccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---c
Confidence            344567999999999999999999853  5777899987533     12235679999999999999999864322   2


Q ss_pred             CEEEEEEecCCCCCHHH
Q 011025          460 QELLLIYEYMPNKSLDV  476 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~  476 (495)
                      +..+|||||+++++|..
T Consensus        91 ~~~~LVmE~~~G~~L~~  107 (365)
T PRK09188         91 GKDGLVRGWTEGVPLHL  107 (365)
T ss_pred             CCcEEEEEccCCCCHHH
Confidence            45799999999999973

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.79  E-value=3e-08  Score=101.10  Aligned_cols=103  Identities=23%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...+.||+|+||.||++.. ..|+.||||.+...  .......+.+|+.++..++||||+++++++...      .
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            46788899999999999999984 46889999999643  234456788999999999999999999987643      2


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      ..++|+||++ ++|..+++..-........+.+
T Consensus       100 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~q  131 (359)
T cd07876         100 DVYLVMELMD-ANLCQVIHMELDHERMSYLLYQ  131 (359)
T ss_pred             eeEEEEeCCC-cCHHHHHhccCCHHHHHHHHHH
Confidence            4799999996 4677776543323333333433

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=98.79  E-value=1.5e-08  Score=100.26  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=83.4

Q ss_pred             CCcccccccccCCceeEEeeeecC-CcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||.|.-|.||.+.+.+ +...|+|++.+..   .+.......|-+||+.++||-+..|++.+..++..+|+|
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            456667889999999999999754 5789999998653   233456678889999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC----CCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS----LSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~----~~~~~~~~l~~~  494 (495)
                      ||++||+|+..++...    .....+.+.+++
T Consensus       157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEv  188 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEV  188 (459)
T ss_pred             ecCCCccHHHHHhhCCCCccchhhHHHHHHHH
Confidence            9999999999887533    222255555554

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=98.78  E-value=1.9e-08  Score=98.56  Aligned_cols=88  Identities=26%  Similarity=0.508  Sum_probs=75.2

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...+.||+|+||.||++.. .+++.|+||.++...  ......+.+|+.++.+++||||+++++++...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            467788999999999999985 468899999987432  23346789999999999999999999999988999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      ++ ++|..++..
T Consensus        81 ~~-~~l~~~~~~   91 (284)
T cd07860          81 LH-QDLKKFMDA   91 (284)
T ss_pred             cc-cCHHHHHHh
Confidence            95 689998865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=98.78  E-value=1.7e-08  Score=98.93  Aligned_cols=99  Identities=25%  Similarity=0.426  Sum_probs=80.4

Q ss_pred             ChHHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe-
Q 011025          382 PLRLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE-  458 (495)
Q Consensus       382 ~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~-  458 (495)
                      ++..+..+.+.|...++||+|+||.||+|.. ..++.+++|.+.... ....++..|+.++.++ +|+||+++.+.+.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            3444455667888889999999999999985 568899999986543 3346788999999998 79999999998853 


Q ss_pred             -----CCEEEEEEecCCCCCHHHHHhcC
Q 011025          459 -----GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       459 -----~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                           ....+++|||+++|+|.+++...
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~  113 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNT  113 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHc
Confidence                 35679999999999999999753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.77  E-value=9.4e-09  Score=100.79  Aligned_cols=97  Identities=23%  Similarity=0.313  Sum_probs=81.9

Q ss_pred             hHHHHHhcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEE
Q 011025          383 LRLALEATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGC  455 (495)
Q Consensus       383 ~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~  455 (495)
                      .+++....+++....++.+|.||+||+|.+      .+.+.|.||.++.. ++-+...|+.|..++-.+.|||++++.|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            345556667888888999999999999964      34567889999754 55667889999999999999999999999


Q ss_pred             EEeC-CEEEEEEecCCCCCHHHHHh
Q 011025          456 CLEG-QELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       456 ~~~~-~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      +.+. +..+++|.++.-|+|+.||.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~  380 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQ  380 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHH
Confidence            9875 55699999999999999998

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=98.77  E-value=2.4e-08  Score=96.28  Aligned_cols=87  Identities=34%  Similarity=0.541  Sum_probs=73.9

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +|...+.||+|+||.||++.. .++.+++|.++...  ..+.+.+|+.++.+++|||++++.+.+.. +..++++||+++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~v~e~~~~   82 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILH-NGLYIVMELMSK   82 (254)
T ss_pred             HceeeeeeccCCCCceEeccc-CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcC-CCcEEEEECCCC
Confidence            467788999999999999985 67889999986432  34678999999999999999999998765 457999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.+++....
T Consensus        83 ~~L~~~l~~~~   93 (254)
T cd05083          83 GNLVNFLRTRG   93 (254)
T ss_pred             CCHHHHHHhcC
Confidence            99999997543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=98.77  E-value=1.7e-08  Score=102.07  Aligned_cols=93  Identities=27%  Similarity=0.460  Sum_probs=76.0

Q ss_pred             cCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC-C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG-Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-~  460 (495)
                      .++|...++||+|+||.||+|..      ..++.||+|.++... ....+.+..|+.++.++ +|+||+++++.+... .
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~   85 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGG   85 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCC
Confidence            45688889999999999999963      134789999997543 33456788999999999 899999999988654 5


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++++||+++|+|.++|....
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~  107 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKR  107 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhcc
Confidence            6789999999999999997543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=98.77  E-value=2.6e-08  Score=97.63  Aligned_cols=89  Identities=22%  Similarity=0.404  Sum_probs=76.2

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||++... +++.|+||.++..  .....+.+.+|+.++.+++|+||+++++++..++..++++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5777889999999999999854 5889999998753  233457899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      ++++.|..++..
T Consensus        82 ~~~~~l~~~~~~   93 (288)
T cd07833          82 VERTLLELLEAS   93 (288)
T ss_pred             CCCCHHHHHHhc
Confidence            998877766654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=98.77  E-value=2.3e-08  Score=100.81  Aligned_cols=90  Identities=27%  Similarity=0.489  Sum_probs=76.2

Q ss_pred             CCcccccccccCCceeEEeeeec--------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA--------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~--------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      .+|...++||+|+||.||++...        .+..|++|.++.. .....+++.+|+.++.++ +||||+++.+.+...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            35777889999999999998731        1236899988754 334567899999999999 8999999999999888


Q ss_pred             EEEEEEecCCCCCHHHHHhc
Q 011025          461 ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..++++||+++|+|.++|..
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~  111 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRA  111 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHh
Confidence            99999999999999999975

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=98.77  E-value=4e-08  Score=96.74  Aligned_cols=91  Identities=25%  Similarity=0.329  Sum_probs=76.1

Q ss_pred             CcccccccccCCceeEEeeee----cCCcEEEEEEcccCCh----hhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTSG----QGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~~----~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  462 (495)
                      +|...+.||+|+||.||++..    .+|..||+|.++....    ...+.+.+|+.++.++ +|+||+++.+.+..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            356678999999999999874    3688999999975322    2346788999999999 699999999998888889


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++++|.++|....
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~  100 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE  100 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC
Confidence            99999999999999997543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.77  E-value=8e-09  Score=107.61  Aligned_cols=83  Identities=31%  Similarity=0.520  Sum_probs=76.0

Q ss_pred             ccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHHH
Q 011025          398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       398 ~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  476 (495)
                      +||+|.||.||-|. ..+...+|||.++....+..+-+..||.+.+.|+|+|||+.+|.+.+++..-|.||-+|||||.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            79999999999998 45566899999997777777888999999999999999999999999999999999999999999


Q ss_pred             HHhc
Q 011025          477 HLFG  480 (495)
Q Consensus       477 ~L~~  480 (495)
                      +|+.
T Consensus       662 LLrs  665 (1226)
T KOG4279|consen  662 LLRS  665 (1226)
T ss_pred             HHHh
Confidence            9985

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=98.77  E-value=3.4e-08  Score=96.67  Aligned_cols=89  Identities=22%  Similarity=0.346  Sum_probs=72.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHH-HHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNL-IAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...+.||+|+||.||++.. .+|+.||+|+++... .+...++..|+.. ++.++||||+++++.+..++..++++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            3677788999999999999985 468999999997542 2334456667665 566799999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |++ |+|.+++..
T Consensus        81 ~~~-~~l~~~l~~   92 (283)
T cd06617          81 VMD-TSLDKFYKK   92 (283)
T ss_pred             hhc-ccHHHHHHH
Confidence            996 789888864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.76  E-value=3.8e-08  Score=101.63  Aligned_cols=85  Identities=15%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..+|...++||+|+||.||++. ...++.||+|...      ...+.+|+.++++++||||+++++++......++|+|+
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            3578999999999999999998 4568899999754      23578999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +. ++|..++...
T Consensus       165 ~~-~~L~~~l~~~  176 (391)
T PHA03212        165 YK-TDLYCYLAAK  176 (391)
T ss_pred             CC-CCHHHHHHhc
Confidence            84 7899888654

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=98.76  E-value=8e-09  Score=110.84  Aligned_cols=94  Identities=29%  Similarity=0.445  Sum_probs=79.8

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecCC-cEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEE-Ee-----
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLADG-KAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCC-LE-----  458 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~g-~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~-~~-----  458 (495)
                      .....++...+.|.+|||+.||.++...+ ..+|+|++-..+.+..+...+||.+|++|+ |+|||.+++.. ..     
T Consensus        33 ~Vg~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~  112 (738)
T KOG1989|consen   33 TVGSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNN  112 (738)
T ss_pred             EECCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCC
Confidence            34556677889999999999999996555 999999998778888899999999999996 99999999932 21     


Q ss_pred             -CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 -GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 -~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                       .-+.+|.||||++|+|-+|+..
T Consensus       113 ~~~EvllLmEyC~gg~Lvd~mn~  135 (738)
T KOG1989|consen  113 GVWEVLLLMEYCKGGSLVDFMNT  135 (738)
T ss_pred             ceeEEEeehhhccCCcHHHHHHH
Confidence             1367999999999999999974

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.76  E-value=1.2e-08  Score=103.37  Aligned_cols=92  Identities=21%  Similarity=0.333  Sum_probs=76.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE-EEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE-LLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-~~lv~  466 (495)
                      ++|...+++|+|+||.++...- .++..+++|.+...  +......-.+|+.++++++|||||.....+..++. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            4667788999999999886652 35678999988643  33445578899999999999999999999988887 89999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||++||+|.+.|...+
T Consensus        84 ~Y~eGg~l~~~i~~~k   99 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK   99 (426)
T ss_pred             eecCCCCHHHHHHHHh
Confidence            9999999999997654

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=98.75  E-value=2.9e-08  Score=95.69  Aligned_cols=83  Identities=20%  Similarity=0.396  Sum_probs=72.9

Q ss_pred             cccCCceeEEeeeec-CCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++... +|+.+++|.+.....   ...+.+.+|+.++.+++||||+++.+....+...++++||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999965 489999999975433   4467799999999999999999999999888899999999999999


Q ss_pred             HHHHhcC
Q 011025          475 DVHLFGL  481 (495)
Q Consensus       475 ~~~L~~~  481 (495)
                      .+++...
T Consensus        81 ~~~l~~~   87 (265)
T cd05579          81 ASLLENV   87 (265)
T ss_pred             HHHHHHc
Confidence            9999763

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.75  E-value=1.9e-08  Score=101.04  Aligned_cols=88  Identities=26%  Similarity=0.481  Sum_probs=72.5

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hh------------hHHHHHHHHHHHHcCCCCCccceE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQ------------GLQEFKNEVNLIAKLQHKNLVRLL  453 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~------------~~~~f~~E~~~l~~l~H~niv~l~  453 (495)
                      -.+.|.+...||+|.||.|-++. ..+++.+|||++.+..  .+            ..+...+||.+|++++|||||+|+
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            34678889999999999999998 4578999999997431  00            135789999999999999999999


Q ss_pred             EEEEe--CCEEEEEEecCCCCCHHH
Q 011025          454 GCCLE--GQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       454 g~~~~--~~~~~lv~Ey~~~GsL~~  476 (495)
                      .+..+  .+.+|||+||+..|.+..
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w  199 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKW  199 (576)
T ss_pred             EeecCcccCceEEEEEeccCCcccc
Confidence            98765  467899999999998664

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=3.2e-09  Score=108.77  Aligned_cols=91  Identities=30%  Similarity=0.490  Sum_probs=77.2

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .|...+.||.|+||.||-+. ..+.+.||||.+.-.   +.+.+++++.|+..+.+++|||.+...|++......|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            46667889999999999998 457889999999743   44557789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCC
Q 011025          468 YMPNKSLDVHLFGLSL  483 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~  483 (495)
                      || -||-.|+|.-+++
T Consensus       107 YC-lGSAsDlleVhkK  121 (948)
T KOG0577|consen  107 YC-LGSASDLLEVHKK  121 (948)
T ss_pred             HH-hccHHHHHHHHhc
Confidence            99 6787887764443

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=98.75  E-value=5.4e-08  Score=95.99  Aligned_cols=89  Identities=27%  Similarity=0.495  Sum_probs=75.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|.+|.||+|.. .+++.|++|.+....  ......+.+|+.++.+++||||+++++.+..++..++|+|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            4677888999999999999985 468899999987542  2334678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |++ ++|.+++..
T Consensus        82 ~~~-~~l~~~~~~   93 (294)
T PLN00009         82 YLD-LDLKKHMDS   93 (294)
T ss_pred             ccc-ccHHHHHHh
Confidence            996 688888754

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=98.75  E-value=4.4e-08  Score=95.84  Aligned_cols=88  Identities=26%  Similarity=0.440  Sum_probs=74.6

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEEEe
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLIYE  467 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~E  467 (495)
                      |...++||+|+||.||++... +++.+++|.+....  ......+.+|+.++.+++|+|++++++++...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            345678999999999999854 58899999998653  33356788999999999999999999999887  78999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |++ ++|.+++...
T Consensus        81 ~~~-~~l~~~~~~~   93 (287)
T cd07840          81 YMD-HDLTGLLDSP   93 (287)
T ss_pred             ccc-ccHHHHHhcc
Confidence            997 5899998765

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=98.74  E-value=4.7e-08  Score=96.37  Aligned_cols=89  Identities=26%  Similarity=0.420  Sum_probs=73.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCE-----
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQE-----  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~-----  461 (495)
                      ++|+..+.||+|+||.||++.. .+++.|++|.++...  ......+.+|+.++..+ +||||+++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            3677889999999999999985 468899999986432  22346788999999999 56999999999877655     


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011025          462 LLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~  480 (495)
                      .++|+||+++ +|.+++..
T Consensus        81 ~~lv~e~~~~-~l~~~~~~   98 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDS   98 (295)
T ss_pred             EEEEeeccCc-CHHHHHHH
Confidence            7999999985 89998864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=98.74  E-value=4.8e-08  Score=98.38  Aligned_cols=99  Identities=22%  Similarity=0.393  Sum_probs=80.3

Q ss_pred             HHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQEL  462 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~  462 (495)
                      ...+++|...++||+|+||.||++. ..++..|++|.+...  .....+.+.+|+.++..++||||+++.+++.. .+..
T Consensus         6 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~   85 (328)
T cd07856           6 FEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDI   85 (328)
T ss_pred             eccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcE
Confidence            3456789999999999999999998 447889999988642  22345678899999999999999999998865 4578


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++++||+ +++|..++........
T Consensus        86 ~lv~e~~-~~~L~~~~~~~~~~~~  108 (328)
T cd07856          86 YFVTELL-GTDLHRLLTSRPLEKQ  108 (328)
T ss_pred             EEEeehh-ccCHHHHHhcCCCCHH
Confidence            9999998 6789999876554443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=98.73  E-value=7.1e-08  Score=97.71  Aligned_cols=97  Identities=23%  Similarity=0.395  Sum_probs=78.8

Q ss_pred             hcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-----
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-----  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  460 (495)
                      ..++|...+.||+|+||.||++. ..++..||||++...  .......+.+|+.++.+++||||+++++++....     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            46678889999999999999998 456899999998643  2333467889999999999999999999886543     


Q ss_pred             -EEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          461 -ELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       461 -~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                       ..++|+||+ +++|.+++........
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~~l~~~  118 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHEKLSED  118 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcCCCCHH
Confidence             458999998 7899999876555554

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.73  E-value=9.7e-08  Score=97.33  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             HhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ....+|...+.||+|+||.||++... .+..||+|.....      ....|+.++.+++|+||+++++++......++|+
T Consensus        63 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         63 VASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hhhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            34467999999999999999999854 5778999976532      2356899999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+ .|+|.+++....
T Consensus       137 e~~-~~~l~~~l~~~~  151 (357)
T PHA03209        137 PHY-SSDLYTYLTKRS  151 (357)
T ss_pred             Ecc-CCcHHHHHHhcc
Confidence            998 578999987543

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=98.73  E-value=4.6e-08  Score=96.73  Aligned_cols=92  Identities=25%  Similarity=0.410  Sum_probs=75.2

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-----
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-----  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  460 (495)
                      ..++|...++||+|+||.||+|.. .+|+.|++|.++...  ......+.+|+.++..++||||+++++++....     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            456788889999999999999996 458899999997542  223456789999999999999999999887644     


Q ss_pred             -----EEEEEEecCCCCCHHHHHhcC
Q 011025          461 -----ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 -----~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                           ..++|+||+++ +|..++...
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~  109 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESG  109 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcC
Confidence                 68999999975 777777654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=98.73  E-value=8.9e-08  Score=95.65  Aligned_cols=89  Identities=29%  Similarity=0.480  Sum_probs=74.1

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |...++||+|+||.||+|.. .++..|++|.+...   .......+.+|+.++..++|||++++.+++......++|+||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            45567899999999999984 46889999998643   223456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +. |+|.+++....
T Consensus       103 ~~-~~l~~~l~~~~  115 (313)
T cd06633         103 CL-GSASDLLEVHK  115 (313)
T ss_pred             CC-CCHHHHHHhcC
Confidence            95 68888876543

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=98.73  E-value=4.6e-08  Score=93.99  Aligned_cols=89  Identities=29%  Similarity=0.509  Sum_probs=77.3

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||++. ..+++.+++|.+...  ......++.+|+.++++++|+||+++.+.+......++|+||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            36677899999999999997 446889999998753  334466788999999999999999999999888999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++++|.+++..
T Consensus        81 ~~~~~L~~~~~~   92 (256)
T cd08530          81 APFGDLSKAISK   92 (256)
T ss_pred             cCCCCHHHHHHH
Confidence            999999999866

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=98.73  E-value=7.1e-08  Score=96.99  Aligned_cols=85  Identities=22%  Similarity=0.314  Sum_probs=72.8

Q ss_pred             cccccC--CceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQG--GFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G--~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|  +||.||++.. ..|+.||+|.+...  .....+.+.+|+.++..++||||+++++++..++..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            456777  8999999984 57899999998743  233457789999999999999999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        84 ~~l~~~l~~~   93 (328)
T cd08226          84 GSANSLLKTY   93 (328)
T ss_pred             CCHHHHHHhh
Confidence            9999998753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.72  E-value=1e-08  Score=106.12  Aligned_cols=102  Identities=25%  Similarity=0.353  Sum_probs=82.0

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEccc----CChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--EEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSR----TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--ELLLIY  466 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~----~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  466 (495)
                      ....+||+|.|-+||||.- ..|.+||.-.++.    .++...+.|..|+.+|+.|+||||+++...+....  ..-+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            4467899999999999984 3578888766542    34566789999999999999999999998887654  478999


Q ss_pred             ecCCCCCHHHHHhcCCC--CHHHHHHHHHhC
Q 011025          467 EYMPNKSLDVHLFGLSL--SLSIKCYLLYIL  495 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~--~~~~~~~l~~~L  495 (495)
                      |.+..|+|+.|++.+++  -.-++.|-+|||
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQIL  153 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQIL  153 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence            99999999999987652  223777777775

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=98.72  E-value=6.2e-08  Score=97.49  Aligned_cols=83  Identities=25%  Similarity=0.347  Sum_probs=67.6

Q ss_pred             cccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC---CCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          399 LGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL---QHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       399 LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ||+|+||.||++.. .+++.||||++....   ......+..|..++...   +||||+++...+......++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999999984 468999999996432   22334556677776655   699999999999999999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        81 g~L~~~l~~~   90 (330)
T cd05586          81 GELFWHLQKE   90 (330)
T ss_pred             ChHHHHHHhc
Confidence            9999998754

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=98.72  E-value=6e-08  Score=99.05  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=73.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...++||+|+||.||++.. ..++.||||.+...  .......+.+|+.++..++||||+++++++...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            46788899999999999999984 46889999999753  234456788999999999999999999987543      3


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++||||++ ++|.+++...
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~~  122 (364)
T cd07875         103 DVYIVMELMD-ANLCQVIQME  122 (364)
T ss_pred             eEEEEEeCCC-CCHHHHHHhc
Confidence            5799999996 5788777644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=98.72  E-value=5.4e-08  Score=95.98  Aligned_cols=91  Identities=22%  Similarity=0.421  Sum_probs=75.2

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  465 (495)
                      ++|...+.||+|+||.||+|... +++.+++|.++....  .....+.+|+.++.+++||||+++.+++...  ...++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            35777889999999999999964 588999999974432  2234578899999999999999999998877  789999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||++ ++|.+++....
T Consensus        85 ~e~~~-~~L~~~~~~~~  100 (293)
T cd07843          85 MEYVE-HDLKSLMETMK  100 (293)
T ss_pred             ehhcC-cCHHHHHHhcc
Confidence            99997 59999887543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=98.71  E-value=8.4e-10  Score=101.89  Aligned_cols=106  Identities=23%  Similarity=0.350  Sum_probs=84.2

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEccc--CChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++.|+.-++||+|.|+.||+.. .+.|+..|+|++..  -+..+.+++.+|+++...|+|||||+|+......+-.+||+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            4566777899999999999887 56788888888863  34457788999999999999999999998888888899999


Q ss_pred             ecCCCCCHHHHHhcCC--CCHHHHHHHHHhC
Q 011025          467 EYMPNKSLDVHLFGLS--LSLSIKCYLLYIL  495 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~L  495 (495)
                      |+|.+|+|..=|-.+.  .+...+.+++|||
T Consensus        90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiL  120 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAREFYSEADASHCIQQIL  120 (355)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999976553221  2333566666664

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=98.71  E-value=2.7e-08  Score=97.50  Aligned_cols=89  Identities=26%  Similarity=0.442  Sum_probs=74.2

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||++.. .+|+.+++|.++...  ......+.+|+.++.+++||||++++++.......++++||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            356678899999999999985 468899999997432  22345688899999999999999999999988999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      ++ ++|.+++...
T Consensus        81 ~~-~~l~~~~~~~   92 (284)
T cd07839          81 CD-QDLKKYFDSC   92 (284)
T ss_pred             CC-CCHHHHHHhc
Confidence            96 6888888653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=98.71  E-value=6.5e-08  Score=96.25  Aligned_cols=86  Identities=29%  Similarity=0.485  Sum_probs=71.9

Q ss_pred             cccccccccCCceeEEeeeec---CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLL  464 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  464 (495)
                      |...++||+|+||.||+|...   .++.+|+|.+....   ....+.+.+|+.++.+++||||+++++.+...  ...++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            566788999999999999953   47899999998632   33346788999999999999999999999887  78999


Q ss_pred             EEecCCCCCHHHHHh
Q 011025          465 IYEYMPNKSLDVHLF  479 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~  479 (495)
                      |+||+++ +|.+++.
T Consensus        82 v~e~~~~-~l~~~~~   95 (316)
T cd07842          82 LFDYAEH-DLWQIIK   95 (316)
T ss_pred             EEeCCCc-CHHHHHH
Confidence            9999974 6777764

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PHA03211 serine/threonine kinase US3; Provisional

Probab=98.71  E-value=6.2e-08  Score=101.91  Aligned_cols=85  Identities=20%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ..|...++||+|+||.||++... .++.|+||...      ...+.+|+.++.+++|+|||++++++..++..++|+|++
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEcc
Confidence            46888889999999999999954 57889999643      234678999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                       .++|.+++....
T Consensus       243 -~~~L~~~l~~~~  254 (461)
T PHA03211        243 -RSDLYTYLGARL  254 (461)
T ss_pred             -CCCHHHHHHhcC
Confidence             579999987543

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=98.70  E-value=5.7e-08  Score=95.55  Aligned_cols=89  Identities=25%  Similarity=0.355  Sum_probs=74.8

Q ss_pred             cccccccccCCceeEEeeee----cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          393 FSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      |...+.||+|+||.||++..    .++..++||.+++..    .+..+.+.+|+.++.++ +||||+++.+....+...+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            56678899999999999873    356789999997432    23346788999999999 6999999999988888899


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+++|+|.+++...
T Consensus        82 lv~e~~~~~~L~~~~~~~   99 (288)
T cd05583          82 LILDYVNGGELFTHLYQR   99 (288)
T ss_pred             EEEecCCCCcHHHHHhhc
Confidence            999999999999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=98.70  E-value=8.6e-08  Score=93.66  Aligned_cols=89  Identities=25%  Similarity=0.382  Sum_probs=71.3

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeC--CEEEEEEe
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG--QELLLIYE  467 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv~E  467 (495)
                      |...++||+|+||.||++.. .++..+++|.++... ........+|+..+.++. |+|++++++++..+  +..++|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            34567899999999999984 468899999987542 222234567898999885 99999999999877  88999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |++ |+|.+++....
T Consensus        81 ~~~-~~l~~~l~~~~   94 (282)
T cd07831          81 LMD-MNLYELIKGRK   94 (282)
T ss_pred             cCC-ccHHHHHHhcc
Confidence            996 68888887643

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.70  E-value=5.9e-08  Score=98.14  Aligned_cols=97  Identities=23%  Similarity=0.322  Sum_probs=77.2

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  459 (495)
                      ..++|...+.||+|+||.||++.. .+++.||||.+....  ......+.+|+.++..++||||+++++++...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            346788889999999999999984 568899999997532  23346688999999999999999999877532      


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ...++++|++ +++|.+++........
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~~l~~~  118 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQKLSDE  118 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcCCCCHH
Confidence            3568999987 8899998876554444

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=98.69  E-value=5.2e-08  Score=98.62  Aligned_cols=95  Identities=26%  Similarity=0.361  Sum_probs=78.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC----------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG----------  459 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----------  459 (495)
                      .+|...+.||+|+||.||+|.. .+|..|++|.+........+.+.+|+.++.+++||||++++++....          
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5788889999999999999984 56889999999766556667899999999999999999998765543          


Q ss_pred             ----CEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          460 ----QELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       460 ----~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                          ...++|+||++ ++|.+++........
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~~l~~~  114 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQGPLSEE  114 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcCCCCHH
Confidence                35789999997 699999876544444

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.69  E-value=2.6e-08  Score=104.19  Aligned_cols=100  Identities=23%  Similarity=0.346  Sum_probs=83.1

Q ss_pred             HHhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  461 (495)
                      ....++|....+||+|.||+|+.+.++ +++..|||.+++..   .++++....|.+++.-. +||-|++|.+.+.+.+.
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            345578999999999999999999964 57889999998763   45677888898888777 59999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++.||||+.+|++..+.+....+..
T Consensus       444 l~fvmey~~Ggdm~~~~~~~~F~e~  468 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHTDVFSEP  468 (694)
T ss_pred             EEEEEEecCCCcEEEEEecccccHH
Confidence            9999999999996666665554444

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.69  E-value=6.2e-08  Score=98.54  Aligned_cols=92  Identities=23%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  459 (495)
                      ..++|...+.||+|+||.||++.. ..++.||||.+...  .......+.+|+.++..++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            346788899999999999999984 46889999999753  233456788999999999999999999987643      


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ...++|+||++ ++|.+++...
T Consensus        95 ~~~~lv~e~~~-~~l~~~~~~~  115 (355)
T cd07874          95 QDVYLVMELMD-ANLCQVIQME  115 (355)
T ss_pred             ceeEEEhhhhc-ccHHHHHhhc
Confidence            34699999996 5677777644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=98.69  E-value=9.1e-08  Score=92.15  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=74.2

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey  468 (495)
                      |...++||+|++|.||++.. .+++.+++|.+...  .....+.+.+|+.++.+++|+|++++.+.+.. ....++++||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGF   81 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecc
Confidence            66778999999999999984 45788999999643  23445678999999999999999999987654 3457899999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        82 ~~~~~l~~~l~~~   94 (257)
T cd08223          82 CEGGDLYHKLKEQ   94 (257)
T ss_pred             cCCCcHHHHHHHh
Confidence            9999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=98.69  E-value=9.4e-08  Score=93.58  Aligned_cols=89  Identities=26%  Similarity=0.469  Sum_probs=75.0

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      |+..++||+|++|.||+|.. .+|..|++|++....  ......+.+|+.++.+++|||++++.+.+..++..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            34567899999999999985 478999999987442  223467889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      + ++|.+++....
T Consensus        81 ~-~~l~~~~~~~~   92 (283)
T cd07835          81 D-LDLKKYMDSSP   92 (283)
T ss_pred             C-cCHHHHHhhCC
Confidence            5 79999987644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=98.69  E-value=7.3e-08  Score=93.78  Aligned_cols=88  Identities=28%  Similarity=0.500  Sum_probs=71.6

Q ss_pred             cccccccccCCceeEEeeeec----CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC------
Q 011025          393 FSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ------  460 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  460 (495)
                      |...++||+|+||.||+|...    .++.||||.+...  +....+++.+|+.++++++||||+++.+++....      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            345678999999999999852    3678999999753  3445678999999999999999999999876532      


Q ss_pred             EEEEEEecCCCCCHHHHHhc
Q 011025          461 ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..++++||+++|+|.+++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~  100 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLM  100 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHH
Confidence            24789999999999998753

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>PRK10345 hypothetical protein; Provisional

Probab=98.68  E-value=1.2e-07  Score=88.82  Aligned_cols=92  Identities=18%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             cccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-----CCCCccceEEEEEeCC---E-EE
Q 011025          393 FSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-----QHKNLVRLLGCCLEGQ---E-LL  463 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~g~~~~~~---~-~~  463 (495)
                      ++..+.||+|+||.||... .++.. +||++........+.+.+|+.++..+     .||||+++.|+..++.   . ..
T Consensus         4 L~~~~~LG~G~~~~Vy~hp-~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYAHP-EDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEECC-CCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            4556789999999999622 23444 69988765444567899999999999     5799999999998763   3 34


Q ss_pred             EEEec--CCCCCHHHHHhcCCCCHH
Q 011025          464 LIYEY--MPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       464 lv~Ey--~~~GsL~~~L~~~~~~~~  486 (495)
                      +|+||  .++|+|.+++........
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~~~~e~  106 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQCRYEED  106 (210)
T ss_pred             EEecCCCCcchhHHHHHHcccccHh
Confidence            78999  568999999976544433

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=98.68  E-value=2.8e-08  Score=101.27  Aligned_cols=105  Identities=24%  Similarity=0.356  Sum_probs=83.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..+|..++.||+|.|.+|+++. ...+..+|||++.+.   .+...+-...|-.+|.+| .||.|++|.--+.+...+|+
T Consensus        72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYF  151 (604)
T KOG0592|consen   72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYF  151 (604)
T ss_pred             hhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEE
Confidence            4578899999999999999998 567899999999753   122344567888889999 89999999998999999999


Q ss_pred             EEecCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          465 IYEYMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      |+||.+||+|.++|+.-. .+.. .+.+-++|
T Consensus       152 vLe~A~nGdll~~i~K~Gsfde~caR~YAAeI  183 (604)
T KOG0592|consen  152 VLEYAPNGDLLDLIKKYGSFDETCARFYAAEI  183 (604)
T ss_pred             EEEecCCCcHHHHHHHhCcchHHHHHHHHHHH
Confidence            999999999999998543 2222 44444443

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=98.68  E-value=8.9e-08  Score=95.38  Aligned_cols=89  Identities=31%  Similarity=0.500  Sum_probs=74.2

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .|...+.||+|+||.||+|.. .+++.+++|.+...   ......++.+|+.++..++|+|++++.+++......++|+|
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   95 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence            356678899999999999994 46788999998632   23445678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+. |+|.+++...
T Consensus        96 ~~~-~~l~~~~~~~  108 (308)
T cd06634          96 YCL-GSASDLLEVH  108 (308)
T ss_pred             ccC-CCHHHHHHHc
Confidence            996 6888877543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.68  E-value=1.5e-07  Score=92.63  Aligned_cols=89  Identities=26%  Similarity=0.457  Sum_probs=68.7

Q ss_pred             CcccccccccCCceeEEeeee--cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcC---CCCCccceEEEEEe-----C
Q 011025          392 HFSDENKLGQGGFGPVYKGTL--ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKL---QHKNLVRLLGCCLE-----G  459 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~--~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~-----~  459 (495)
                      +|...++||+|+||.||++..  .++..||+|.++...  ......+.+|+.++..+   +||||+++++++..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            567788999999999999984  346789999987432  22234566777777665   69999999999853     3


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ...++|+||++ ++|.+++...
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~  102 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKV  102 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhC
Confidence            45899999996 7999999653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.67  E-value=3e-08  Score=95.01  Aligned_cols=87  Identities=24%  Similarity=0.391  Sum_probs=79.2

Q ss_pred             ccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .+.||+|+|+.|-.++ +.+|.+.|||++.+..........+|++++... .|+||++|+.++.++...|||+|-|.+|+
T Consensus        83 ~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGp  162 (463)
T KOG0607|consen   83 SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGP  162 (463)
T ss_pred             HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCch
Confidence            4689999999999887 778999999999988778888999999999887 59999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011025          474 LDVHLFGLS  482 (495)
Q Consensus       474 L~~~L~~~~  482 (495)
                      |..+|..++
T Consensus       163 lLshI~~~~  171 (463)
T KOG0607|consen  163 LLSHIQKRK  171 (463)
T ss_pred             HHHHHHHhh
Confidence            999997544

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=98.67  E-value=1.5e-07  Score=95.38  Aligned_cols=102  Identities=23%  Similarity=0.361  Sum_probs=81.4

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-  459 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-  459 (495)
                      .++...+++|...+.||+|+||.||++. ..+++.||+|.+...  +....+.+.+|+.++.+++||||+++.+++... 
T Consensus        10 ~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~   89 (345)
T cd07877          10 KTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPAR   89 (345)
T ss_pred             HHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecc
Confidence            4556677899999999999999999998 457889999999753  223356788999999999999999999987643 


Q ss_pred             -----CEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          460 -----QELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       460 -----~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                           ...++++|++ +++|.+++........
T Consensus        90 ~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~  120 (345)
T cd07877          90 SLEEFNDVYLVTHLM-GADLNNIVKCQKLTDD  120 (345)
T ss_pred             cccccccEEEEehhc-ccCHHHHHhcCCCCHH
Confidence                 2367888876 8899998876655544

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=98.67  E-value=1e-07  Score=94.77  Aligned_cols=91  Identities=24%  Similarity=0.439  Sum_probs=74.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  464 (495)
                      .++|...++||+|+||.||+|.. .+|+.||+|.++....  .....+.+|+.++.+++|+||+++.+++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            45788889999999999999995 4689999999874322  2234567899999999999999999998754  56899


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||++ ++|.+++...
T Consensus        86 v~e~~~-~~l~~~l~~~  101 (309)
T cd07845          86 VMEYCE-QDLASLLDNM  101 (309)
T ss_pred             EEecCC-CCHHHHHHhc
Confidence            999996 5898888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=98.66  E-value=1e-08  Score=100.08  Aligned_cols=98  Identities=31%  Similarity=0.481  Sum_probs=72.6

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC---E--EEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ---E--LLLI  465 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---~--~~lv  465 (495)
                      .+...+++|.|+||.||+|.+ ..++.||||..-....    ---+|+.+|.++.|||||+|+-++....   +  ..+|
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            456678999999999999995 4578999998864322    2247899999999999999998876532   2  3689


Q ss_pred             EecCCCCCHHHHHhc-----CC-CCHHHHHHHHHh
Q 011025          466 YEYMPNKSLDVHLFG-----LS-LSLSIKCYLLYI  494 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~-----~~-~~~~~~~~l~~~  494 (495)
                      +||||. +|.++++.     .+ ....++.+..|+
T Consensus       101 leymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Ql  134 (364)
T KOG0658|consen  101 LEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQL  134 (364)
T ss_pred             HHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHH
Confidence            999975 69988883     21 233366666655

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.66  E-value=2.2e-07  Score=87.13  Aligned_cols=90  Identities=32%  Similarity=0.500  Sum_probs=78.8

Q ss_pred             cccccccccCCceeEEeeeecC-CcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          393 FSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      |...+.||+|++|.||++...+ ++.+++|.+...... ..+.+.+|+..+.+++|+|++++++.+......++++||++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            3456789999999999999754 889999999866544 67789999999999999999999999988889999999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +++|.+++....
T Consensus        81 ~~~L~~~~~~~~   92 (225)
T smart00221       81 GGDLFDYLRKKG   92 (225)
T ss_pred             CCCHHHHHHhcc
Confidence            999999997644

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=98.65  E-value=1.1e-07  Score=95.81  Aligned_cols=96  Identities=24%  Similarity=0.411  Sum_probs=77.0

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC--CEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG--QELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~--~~~~  463 (495)
                      .++|...+.||+|+||.||+|... +++.+++|.+...  .......+.+|+.++.++ +||||+++++++...  ...+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            456788899999999999999854 5789999988642  234456688999999999 999999999988653  4679


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHH
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +|+||++ ++|..++......+.
T Consensus        86 lv~e~~~-~~L~~~~~~~~~~~~  107 (337)
T cd07852          86 LVFEYME-TDLHAVIRANILEDV  107 (337)
T ss_pred             EEecccc-cCHHHHHhcCCCCHH
Confidence            9999997 699999976543443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=98.65  E-value=1.2e-07  Score=95.63  Aligned_cols=86  Identities=22%  Similarity=0.353  Sum_probs=71.1

Q ss_pred             cccccccCCceeEEeeee-cCCcEEEEEEcccCChhh--------------HHHHHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          395 DENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQG--------------LQEFKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~--------------~~~f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      ..+.||+|+||.||++.. ..++.||||.++......              ...+.+|+.++..++|+||+++++++...
T Consensus        13 ~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   92 (335)
T PTZ00024         13 KGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG   92 (335)
T ss_pred             hhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC
Confidence            356799999999999984 468899999986432111              12478999999999999999999999989


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +..++++||++ |+|.+++...
T Consensus        93 ~~~~lv~e~~~-~~l~~~l~~~  113 (335)
T PTZ00024         93 DFINLVMDIMA-SDLKKVVDRK  113 (335)
T ss_pred             CcEEEEEeccc-cCHHHHHHhc
Confidence            99999999996 7999998653

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=98.64  E-value=1.4e-07  Score=93.54  Aligned_cols=90  Identities=23%  Similarity=0.410  Sum_probs=72.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-------  460 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-------  460 (495)
                      ++|...++||+|+||.||++.. .+++.||||.+....  ......+.+|+.++.+++||||+++++++...+       
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            4688889999999999999984 468899999986432  222345678999999999999999999987644       


Q ss_pred             -EEEEEEecCCCCCHHHHHhcC
Q 011025          461 -ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 -~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                       ..++|+||++ ++|.+++...
T Consensus        92 ~~~~lv~e~~~-~~l~~~l~~~  112 (310)
T cd07865          92 GSFYLVFEFCE-HDLAGLLSNK  112 (310)
T ss_pred             ceEEEEEcCCC-cCHHHHHHhc
Confidence             3499999996 5888888755

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=98.64  E-value=1.7e-07  Score=95.37  Aligned_cols=91  Identities=24%  Similarity=0.333  Sum_probs=74.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...+.||+|+||.||++.. .+++.||+|.+...  .......+.+|+.++..++|+||+++++++...      .
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   94 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQ   94 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccC
Confidence            46788889999999999999984 57899999998643  334456788999999999999999999987643      3


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++|+||+. ++|.+++...
T Consensus        95 ~~~lv~e~~~-~~l~~~~~~~  114 (353)
T cd07850          95 DVYLVMELMD-ANLCQVIQMD  114 (353)
T ss_pred             cEEEEEeccC-CCHHHHHhhc
Confidence            4699999995 6888888654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.63  E-value=1.5e-07  Score=98.75  Aligned_cols=86  Identities=21%  Similarity=0.392  Sum_probs=68.1

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--------
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--------  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  459 (495)
                      ...+|...++||+|+||.||+|.. ..++.||||.+....    ....+|+.++..++||||+++.+++...        
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            346788999999999999999985 568899999886432    2345799999999999999998876432        


Q ss_pred             CEEEEEEecCCCCCHHHHHh
Q 011025          460 QELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      ..+++||||++ ++|.+++.
T Consensus       140 ~~l~lvmE~~~-~~l~~~~~  158 (440)
T PTZ00036        140 IFLNVVMEFIP-QTVHKYMK  158 (440)
T ss_pred             eEEEEEEecCC-ccHHHHHH
Confidence            13578999997 57777764

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=98.62  E-value=1.6e-07  Score=94.67  Aligned_cols=96  Identities=20%  Similarity=0.337  Sum_probs=77.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  462 (495)
                      .++|...++||+|+||.||+|. ..+|+.|++|.+.... ......+.+|+.++.+++|+||+++++++...     ...
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            4678889999999999999998 4568999999997432 33456788999999999999999999887643     357


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++++||++ ++|..++........
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~l~~~  106 (336)
T cd07849          84 YIVQELME-TDLYKLIKTQHLSND  106 (336)
T ss_pred             EEEehhcc-cCHHHHHhcCCCCHH
Confidence            99999996 589888876654444

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=98.62  E-value=7.5e-08  Score=94.24  Aligned_cols=89  Identities=28%  Similarity=0.412  Sum_probs=73.6

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecC
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      |...+.||+|+||.||+|... +++.|++|.+..... .......+|+..+.+++ |+||+++.+.+..++..++|+||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            345678999999999999964 578899999875422 22334567999999998 999999999999899999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                       +|+|.+++....
T Consensus        81 -~~~l~~~~~~~~   92 (283)
T cd07830          81 -EGNLYQLMKDRK   92 (283)
T ss_pred             -CCCHHHHHHhcc
Confidence             899999987653

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=98.61  E-value=3.6e-07  Score=88.27  Aligned_cols=85  Identities=20%  Similarity=0.322  Sum_probs=67.8

Q ss_pred             cccccCCceeEEeeee-cCCcEEEEEEcccCCh---hhHHHHHHHHHHH-HcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG---QGLQEFKNEVNLI-AKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~---~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +.||+|+||.||++.. .+|+.||||.++....   .....+..|..++ ...+|+|++++.+.+...+..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999985 4688999999975432   2233455555544 445899999999999988999999999999


Q ss_pred             CCHHHHHhcC
Q 011025          472 KSLDVHLFGL  481 (495)
Q Consensus       472 GsL~~~L~~~  481 (495)
                      |+|.+++...
T Consensus        82 ~~L~~~l~~~   91 (260)
T cd05611          82 GDCASLIKTL   91 (260)
T ss_pred             CCHHHHHHHc
Confidence            9999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.60  E-value=9.8e-09  Score=105.90  Aligned_cols=88  Identities=24%  Similarity=0.425  Sum_probs=76.9

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      +.+.-.||.|+||+|||++-+ .+-..|.|.+...+....++|+-||.+++...||+||+|++.+...+.+|++.|||.|
T Consensus        34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~G  113 (1187)
T KOG0579|consen   34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGG  113 (1187)
T ss_pred             HHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCC
Confidence            334556999999999999954 3556788999888888899999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhc
Q 011025          472 KSLDVHLFG  480 (495)
Q Consensus       472 GsL~~~L~~  480 (495)
                      |-.+..+-.
T Consensus       114 GAVDaimlE  122 (1187)
T KOG0579|consen  114 GAVDAIMLE  122 (1187)
T ss_pred             chHhHHHHH
Confidence            999987753

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.60  E-value=2.3e-07  Score=92.59  Aligned_cols=81  Identities=26%  Similarity=0.434  Sum_probs=66.1

Q ss_pred             ccccccCCceeEEeeeec---CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEEEEecCC
Q 011025          396 ENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLLIYEYMP  470 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~Ey~~  470 (495)
                      +.+||+|+||.||++...   +++.+|+|.+....  ....+.+|+.++.+++||||+++++++..  +...++++||++
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            468999999999999853   46789999997432  23457899999999999999999998754  456799999985


Q ss_pred             CCCHHHHHh
Q 011025          471 NKSLDVHLF  479 (495)
Q Consensus       471 ~GsL~~~L~  479 (495)
                       ++|.+++.
T Consensus        84 -~~l~~~~~   91 (317)
T cd07868          84 -HDLWHIIK   91 (317)
T ss_pred             -CCHHHHHH
Confidence             58888875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=98.60  E-value=1.8e-07  Score=89.66  Aligned_cols=83  Identities=29%  Similarity=0.412  Sum_probs=72.7

Q ss_pred             cccCCceeEEeeeec-CCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          399 LGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       399 LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ||+|+||.||++... +++.+++|.++....   .....+.+|+.++.+++|+||+++++.+..+...++++||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999854 588999999875432   3456899999999999999999999999888999999999999999


Q ss_pred             HHHHhcC
Q 011025          475 DVHLFGL  481 (495)
Q Consensus       475 ~~~L~~~  481 (495)
                      .+++...
T Consensus        81 ~~~l~~~   87 (250)
T cd05123          81 FSHLSKE   87 (250)
T ss_pred             HHHHHhc
Confidence            9999765

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=98.60  E-value=1.7e-07  Score=93.36  Aligned_cols=85  Identities=19%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .+.+|.|+++.|+++.. +++.||||++...  +......+.+|+.++..++|+||+++++++...+..++++||+++|+
T Consensus         7 ~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~   85 (314)
T cd08216           7 GKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGS   85 (314)
T ss_pred             hHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCC
Confidence            34455666666666665 7899999999754  44556789999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 011025          474 LDVHLFGL  481 (495)
Q Consensus       474 L~~~L~~~  481 (495)
                      |.+++...
T Consensus        86 l~~~l~~~   93 (314)
T cd08216          86 CEDLLKTH   93 (314)
T ss_pred             HHHHHHHh
Confidence            99999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=98.60  E-value=8.2e-08  Score=92.77  Aligned_cols=89  Identities=26%  Similarity=0.397  Sum_probs=70.7

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      +|...++||+|+||.||++... .+..+++|.++..     ......++..|+.++.+++||||+++.+.+...+..++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            3566789999999999999843 3444555555431     223345677899999999999999999999888889999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++++|.+++..
T Consensus        81 ~e~~~~~~l~~~~~~   95 (260)
T cd08222          81 TEYCEGRDLDCKLEE   95 (260)
T ss_pred             EEeCCCCCHHHHHHH
Confidence            999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=98.59  E-value=9.3e-08  Score=93.36  Aligned_cols=87  Identities=29%  Similarity=0.447  Sum_probs=74.9

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ...+.||+|.||.||+|+. .+++.+++|.+....  ....+.+.+|+.++.+++|+|++++.+++...+..++|+||++
T Consensus         2 ~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (282)
T cd07829           2 EKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD   81 (282)
T ss_pred             eeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC
Confidence            4567899999999999995 458999999998653  3335678899999999999999999999998889999999997


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                       ++|.+++...
T Consensus        82 -~~l~~~i~~~   91 (282)
T cd07829          82 -MDLKKYLDKR   91 (282)
T ss_pred             -cCHHHHHHhh
Confidence             6999999865

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=1.6e-07  Score=91.55  Aligned_cols=103  Identities=21%  Similarity=0.384  Sum_probs=81.3

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEccc--CChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-----CCEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-----GQELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-----~~~~~  463 (495)
                      .|...+.||+|+||.|+++. -.+|+.||+|.+..  ......+.-.+|+.++..++|+||+.+..+...     -.+.|
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvY  102 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVY  102 (359)
T ss_pred             eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeE
Confidence            44446789999999999998 45789999999973  344556778899999999999999999998765     35789


Q ss_pred             EEEecCCCCCHHHHHhcCC-CCHH-HHHHHHHhC
Q 011025          464 LIYEYMPNKSLDVHLFGLS-LSLS-IKCYLLYIL  495 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~L  495 (495)
                      +|+|+| .-+|...|+... .... ...++.|+|
T Consensus       103 iV~elM-etDL~~iik~~~~L~d~H~q~f~YQiL  135 (359)
T KOG0660|consen  103 LVFELM-ETDLHQIIKSQQDLTDDHAQYFLYQIL  135 (359)
T ss_pred             EehhHH-hhHHHHHHHcCccccHHHHHHHHHHHH
Confidence            999999 689999998776 4433 455555543

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=98.55  E-value=2.3e-07  Score=93.70  Aligned_cols=90  Identities=17%  Similarity=0.369  Sum_probs=73.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QEL  462 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  462 (495)
                      ++|...++||+|+||.||++.. .++..|+||.+...  .......+.+|+.++..++|+||+++.+++...     ...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            4678888999999999999984 56899999998753  233455678999999999999999999987643     347


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++++||+. ++|.+++...
T Consensus        85 ~lv~e~~~-~~L~~~~~~~  102 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSS  102 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcC
Confidence            99999995 7899988654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=98.55  E-value=3.1e-07  Score=92.97  Aligned_cols=89  Identities=26%  Similarity=0.462  Sum_probs=72.3

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||.+...  .......+.+|+.++..++||||+++++++...      .
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            36788889999999999999984 56899999998743  222345688999999999999999999987653      3


Q ss_pred             EEEEEEecCCCCCHHHHHh
Q 011025          461 ELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~  479 (495)
                      ..++|+||+. ++|..++.
T Consensus        94 ~~~lv~e~~~-~~l~~~~~  111 (342)
T cd07879          94 DFYLVMPYMQ-TDLQKIMG  111 (342)
T ss_pred             eEEEEecccc-cCHHHHHc
Confidence            5699999996 47887764

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=98.55  E-value=3.7e-07  Score=89.60  Aligned_cols=87  Identities=26%  Similarity=0.461  Sum_probs=67.2

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcC---CCCCccceEEEEEe-----CCE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKL---QHKNLVRLLGCCLE-----GQE  461 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~-----~~~  461 (495)
                      |...+.||+|+||.||++.. .+++.||+|.++....  .....+.+|+.++..+   +||||+++++++..     ...
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            56678899999999999984 4688999999975321  2234566777776655   79999999998764     245


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011025          462 LLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~  480 (495)
                      .++++||++ ++|.+++..
T Consensus        82 ~~lv~e~~~-~~l~~~~~~   99 (288)
T cd07863          82 VTLVFEHVD-QDLRTYLDK   99 (288)
T ss_pred             EEEEEcccc-cCHHHHHHh
Confidence            799999997 589998875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=98.54  E-value=5e-07  Score=88.62  Aligned_cols=84  Identities=27%  Similarity=0.328  Sum_probs=65.1

Q ss_pred             ccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHH---HHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          398 KLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNL---IAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~---l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      .||+|+||.||++.. .+++.+|+|.+.+..   ......+.+|..+   +...+||||+.+.+.+...+..++|+||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999985 468899999986432   1222334455433   334579999999999988889999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++...
T Consensus        81 ~~~L~~~i~~~   91 (279)
T cd05633          81 GGDLHYHLSQH   91 (279)
T ss_pred             CCCHHHHHHhc
Confidence            99999998754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.53  E-value=4.3e-08  Score=93.64  Aligned_cols=93  Identities=24%  Similarity=0.411  Sum_probs=72.9

Q ss_pred             hcCCcccccccccCCceeEEeeeec---C--CcEEEEEEcccCCh-hh-HHHHHHHHHHHHcCCCCCccceEEEEEe-CC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA---D--GKAIAVKRLSRTSG-QG-LQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~---~--g~~VaVK~l~~~~~-~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~  460 (495)
                      ....|+...+||+|.||.|||+.-.   +  ....|+|.++.... .+ ...-.+|+.++++++||||+.|..+... +.
T Consensus        22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~  101 (438)
T KOG0666|consen   22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDK  101 (438)
T ss_pred             HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCc
Confidence            3456777888999999999999732   2  23689999975422 22 2456899999999999999999999887 67


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..+|++||.++ +|...|+-++
T Consensus       102 ~v~l~fdYAEh-DL~~II~fHr  122 (438)
T KOG0666|consen  102 KVWLLFDYAEH-DLWHIIKFHR  122 (438)
T ss_pred             eEEEEehhhhh-hHHHHHHHhc
Confidence            78999999975 7888887544

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=98.53  E-value=2e-07  Score=93.91  Aligned_cols=90  Identities=14%  Similarity=0.316  Sum_probs=74.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  463 (495)
                      ++|...+.||+|+||.||++.. .+|..|++|.+....  ......+.+|+.++.+++||||+++.+++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5788889999999999999984 468999999997542  2345678899999999999999999887653    34679


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+. |+|.+++...
T Consensus        85 lv~e~~~-~~l~~~~~~~  101 (334)
T cd07855          85 VVMDLME-SDLHHIIHSD  101 (334)
T ss_pred             EEEehhh-hhHHHHhccC
Confidence            9999995 6899998644

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PHA03207 serine/threonine kinase US3; Provisional

Probab=98.52  E-value=3.7e-07  Score=94.32  Aligned_cols=85  Identities=14%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             cCCcccccccccCCceeEEeeeec---CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ...|...++||+|+||.||++...   .+..|+||.+...     ..+.+|+.++.+++||||+++++.+......++++
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            457888999999999999998742   3578999988643     23568999999999999999999998888999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      |++. ++|.+++..
T Consensus       166 e~~~-~~l~~~l~~  178 (392)
T PHA03207        166 PKYK-CDLFTYVDR  178 (392)
T ss_pred             hhcC-CCHHHHHHh
Confidence            9985 789998853

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.51  E-value=3.9e-08  Score=107.77  Aligned_cols=110  Identities=21%  Similarity=0.232  Sum_probs=88.7

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      ..++...++|...++||+|+||.|..... ..++..|+|++.++..   ....-|..|-.+|.--+.++|++|+-.+.+.
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            45556678899999999999999999985 4577889999987532   2345688999999999999999999889999


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC-CCHHH-HHHHHH
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS-LSLSI-KCYLLY  493 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~-~~~~~-~~~l~~  493 (495)
                      ..+|+|||||+||+|-.+|.... ....| +.|+++
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aE  183 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAE  183 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHH
Confidence            99999999999999999997765 44444 344443

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=98.51  E-value=4.2e-07  Score=90.60  Aligned_cols=81  Identities=27%  Similarity=0.432  Sum_probs=65.9

Q ss_pred             ccccccCCceeEEeeeec---CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEEEEecCC
Q 011025          396 ENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLLIYEYMP  470 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~Ey~~  470 (495)
                      +.+||+|+||.||++...   .+..+|+|.+....  ....+.+|+.++.+++||||+++.+++..  +...++|+||++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            468999999999999853   35689999987542  23467899999999999999999998854  456799999986


Q ss_pred             CCCHHHHHh
Q 011025          471 NKSLDVHLF  479 (495)
Q Consensus       471 ~GsL~~~L~  479 (495)
                       ++|.+++.
T Consensus        84 -~~l~~~~~   91 (317)
T cd07867          84 -HDLWHIIK   91 (317)
T ss_pred             -CcHHHHHH
Confidence             57888775

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=98.50  E-value=3.2e-07  Score=89.57  Aligned_cols=87  Identities=25%  Similarity=0.436  Sum_probs=73.8

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ...+.||+|++|.||++.. .+++.+++|.++....  .....+.+|+.++.+++|+||+++.+.+..+...++|+||++
T Consensus         2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   81 (283)
T cd05118           2 QKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD   81 (283)
T ss_pred             ccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC
Confidence            4457899999999999985 4688999999875432  345678899999999999999999999998999999999997


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      + +|.+++...
T Consensus        82 ~-~l~~~l~~~   91 (283)
T cd05118          82 T-DLYKLIKDR   91 (283)
T ss_pred             C-CHHHHHHhh
Confidence            4 899888764

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=98.50  E-value=4e-08  Score=91.20  Aligned_cols=95  Identities=25%  Similarity=0.330  Sum_probs=82.8

Q ss_pred             HhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-----CCE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-----GQE  461 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-----~~~  461 (495)
                      ....+|...+.||+|||..||.++ +.+++..|+|++...+.++.+..++|++..++++|||+++++..+..     ..+
T Consensus        18 In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~   97 (302)
T KOG2345|consen   18 INNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHE   97 (302)
T ss_pred             EcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCcee
Confidence            345678888999999999999998 77899999999988777888999999999999999999999887643     345


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .||+++|...|+|.+.+...+
T Consensus        98 ~yll~Pyy~~Gsl~d~i~~~k  118 (302)
T KOG2345|consen   98 AYLLLPYYKRGSLLDEIERLK  118 (302)
T ss_pred             EEEEeehhccccHHHHHHHHh
Confidence            899999999999999987543

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=98.50  E-value=2.6e-07  Score=92.82  Aligned_cols=89  Identities=20%  Similarity=0.363  Sum_probs=75.1

Q ss_pred             CcccccccccCCceeEEeeeec-CCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-----EEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-----ELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  463 (495)
                      +|...++||+|+||.||++... .++.+++|.+....  ....+.+.+|+.++..++|+||+++.+++....     ..+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            3667789999999999999954 58899999997543  344578999999999999999999999987764     789


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +++||++ ++|.+++...
T Consensus        81 lv~e~~~-~~l~~~l~~~   97 (330)
T cd07834          81 IVTELME-TDLHKVIKSP   97 (330)
T ss_pred             EEecchh-hhHHHHHhCC
Confidence            9999997 5899988764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.49  E-value=1.4e-06  Score=79.94  Aligned_cols=83  Identities=35%  Similarity=0.575  Sum_probs=73.5

Q ss_pred             cccCCceeEEeeeecC-CcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHHH
Q 011025          399 LGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       399 LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  476 (495)
                      ||+|.+|.||++...+ ++.+++|.+...... ..+.+.+|+..+..++|++++++++........++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999999644 889999999865432 45789999999999999999999999998889999999999999999


Q ss_pred             HHhcC
Q 011025          477 HLFGL  481 (495)
Q Consensus       477 ~L~~~  481 (495)
                      ++...
T Consensus        81 ~~~~~   85 (215)
T cd00180          81 LLKEN   85 (215)
T ss_pred             HHHhc
Confidence            99865

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.49  E-value=2.8e-08  Score=110.29  Aligned_cols=93  Identities=28%  Similarity=0.437  Sum_probs=80.4

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +-++...++||.|.||.||.+. .++|+..|||.++-..  ......+.+|+.++..++|||+|+..|+-...++.+|.|
T Consensus      1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHH
Confidence            3455667899999999999998 6789999999997443  334567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+.+...+
T Consensus      1314 EyC~~GsLa~ll~~gr 1329 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGR 1329 (1509)
T ss_pred             HHhccCcHHHHHHhcc
Confidence            9999999999997654

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=98.49  E-value=7.5e-07  Score=87.27  Aligned_cols=84  Identities=29%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             ccccCCceeEEeeee-cCCcEEEEEEcccCCh---hhHHHHHHHHH---HHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          398 KLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG---QGLQEFKNEVN---LIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~---~~~~~f~~E~~---~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      +||+|+||.||++.. .+++.||+|.+.+...   +....+..|..   ++....||||+++.+.+...+..++|+||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999984 4688999999875321   22223444543   4445689999999999998899999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++...
T Consensus        81 g~~L~~~l~~~   91 (278)
T cd05606          81 GGDLHYHLSQH   91 (278)
T ss_pred             CCcHHHHHHhc
Confidence            99999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=98.49  E-value=4.2e-07  Score=89.29  Aligned_cols=85  Identities=24%  Similarity=0.404  Sum_probs=69.8

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      +|...++||+|+||.||++.. .+++.+|+|.+.... ......+.+|+.++.++. |+||+++++.+..++..++++||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            455567899999999999984 468999999997543 344567899999999996 99999999999888889999999


Q ss_pred             CCCCCHHHH
Q 011025          469 MPNKSLDVH  477 (495)
Q Consensus       469 ~~~GsL~~~  477 (495)
                      ++ ++|.++
T Consensus        85 ~~-~~l~~l   92 (288)
T cd06616          85 MD-ISLDKF   92 (288)
T ss_pred             cc-CCHHHH
Confidence            85 455554

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=98.49  E-value=8.4e-07  Score=86.44  Aligned_cols=87  Identities=18%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             cCCccccccc--ccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKL--GQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~L--G~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .+++...+.+  |+|+||.||++.. .++..+++|.+........     |+.....+ +||||+++++.+..++..++|
T Consensus        13 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv   87 (267)
T PHA03390         13 LKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTLKGHVLI   87 (267)
T ss_pred             HHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecCCeeEEE
Confidence            3455555555  9999999999984 4678899999874321111     22222212 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++|+|.+++...
T Consensus        88 ~e~~~~~~L~~~l~~~  103 (267)
T PHA03390         88 MDYIKDGDLFDLLKKE  103 (267)
T ss_pred             EEcCCCCcHHHHHHhc
Confidence            9999999999999765

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=98.49  E-value=5.5e-07  Score=89.01  Aligned_cols=89  Identities=24%  Similarity=0.425  Sum_probs=72.5

Q ss_pred             CCcccccccccCCceeEEeeeecC-CcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++.... ++.|+||.++... .....++..|+.++.+.+ |+||+++++.+......++++|
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            456778899999999999999754 8899999997543 234456777887777774 9999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |++ ++|.+++..
T Consensus        95 ~~~-~~l~~l~~~  106 (296)
T cd06618          95 LMS-TCLDKLLKR  106 (296)
T ss_pred             ccC-cCHHHHHHH
Confidence            985 577776654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=98.49  E-value=7e-08  Score=95.98  Aligned_cols=92  Identities=24%  Similarity=0.317  Sum_probs=74.8

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--Chhh-----HHHHHHHHHHHHcCCCCCccceEEEEEe-CCE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQG-----LQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQE  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~-----~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  461 (495)
                      ++|-..++||+|+|.+|||+. +...+.||||+-...  ..+.     .+.-.+|-++.+.|.||.||++..++.- .+.
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            456667899999999999998 667889999986422  1111     2346789999999999999999998754 566


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .+-|+||+++.+|+.||+.++
T Consensus       543 FCTVLEYceGNDLDFYLKQhk  563 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK  563 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh
Confidence            789999999999999998766

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=98.48  E-value=4e-07  Score=90.29  Aligned_cols=92  Identities=27%  Similarity=0.419  Sum_probs=72.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCC------
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ------  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  460 (495)
                      .++|...++||+|+||.||++.. .+++.+++|.+.....  .....+.+|+.++..++||||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            46788899999999999999984 4688999999864322  22346789999999999999999998875432      


Q ss_pred             --EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 --ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 --~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                        ..++|+||++ ++|..++....
T Consensus        87 ~~~~~lv~~~~~-~~l~~~~~~~~  109 (311)
T cd07866          87 RGSVYMVTPYMD-HDLSGLLENPS  109 (311)
T ss_pred             CceEEEEEecCC-cCHHHHHhccc
Confidence              4699999996 47887776543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=98.47  E-value=4e-07  Score=92.19  Aligned_cols=97  Identities=23%  Similarity=0.386  Sum_probs=78.3

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE----
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE----  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----  461 (495)
                      ..++|...+.||+|+||.||+|.. .+++.|+||.+...  +......+.+|+.++.+++|+||++++++....+.    
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            356788889999999999999985 45789999998743  23345668899999999999999999987765554    


Q ss_pred             --EEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          462 --LLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       462 --~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                        .++|+||+ +++|.+++........
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~~~l~~~  118 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKCQKLSDD  118 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhcCCCCHH
Confidence              89999998 6799999987554444

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=98.47  E-value=2.7e-07  Score=96.35  Aligned_cols=91  Identities=24%  Similarity=0.397  Sum_probs=76.3

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-C-----CCccceEEEEEeCCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-H-----KNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H-----~niv~l~g~~~~~~~~~l  464 (495)
                      +|...+.||+|.||+|.|+. ..+++.||||+++... .-..+-..|+.+|..|+ |     -|+|+++.++.-.+..+|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            67778999999999999999 5679999999998542 22345578899999886 4     389999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSLS  484 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~  484 (495)
                      |+|.+ .-+|.+||+.+...
T Consensus       266 VfELL-~~NLYellK~n~f~  284 (586)
T KOG0667|consen  266 VFELL-STNLYELLKNNKFR  284 (586)
T ss_pred             eehhh-hhhHHHHHHhcCCC
Confidence            99998 67899999876633

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=98.45  E-value=9.5e-07  Score=86.42  Aligned_cols=87  Identities=28%  Similarity=0.492  Sum_probs=69.3

Q ss_pred             cccccccccCCceeEEeeeec-CCcEEEEEEcccCCh--hhHHHHHHHHHHHHcC---CCCCccceEEEEEeCCE-----
Q 011025          393 FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKL---QHKNLVRLLGCCLEGQE-----  461 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~-----  461 (495)
                      |...++||+|+||.||++... +++.+++|.++....  .....+.+|+.++.++   +|+|++++.+.+...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            455788999999999999965 488999999974322  2234577788776655   69999999999988766     


Q ss_pred             EEEEEecCCCCCHHHHHhc
Q 011025          462 LLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~  480 (495)
                      .++++||++ ++|.+++..
T Consensus        81 ~~l~~e~~~-~~l~~~l~~   98 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSK   98 (287)
T ss_pred             eEEEehhcc-cCHHHHHHH
Confidence            899999996 589998865

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PTZ00284 protein kinase; Provisional

Probab=98.41  E-value=9.9e-07  Score=93.31  Aligned_cols=93  Identities=17%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             HHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC------CCccceEEEEEeC
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH------KNLVRLLGCCLEG  459 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H------~niv~l~g~~~~~  459 (495)
                      ...+++|...++||+|+||.||++.. ..++.||||+++... ....++..|+.++.+++|      .+++++..++...
T Consensus       125 ~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        125 DVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             ccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            34567899999999999999999984 468899999997432 223456667777776654      4578888877654


Q ss_pred             -CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 -QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 -~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                       ...++|+|++ +++|.+++...
T Consensus       204 ~~~~~iv~~~~-g~~l~~~l~~~  225 (467)
T PTZ00284        204 TGHMCIVMPKY-GPCLLDWIMKH  225 (467)
T ss_pred             CceEEEEEecc-CCCHHHHHHHc
Confidence             5678999988 78899888654

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.38  E-value=1.3e-07  Score=86.84  Aligned_cols=102  Identities=21%  Similarity=0.432  Sum_probs=81.5

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeC--CEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG--QELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv  465 (495)
                      .++|...+++|+|.|++|+.|. ..+.+.+.||++++   -..+...+|+.++..|. ||||++|+.+..++  ..+.||
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKP---VkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKP---VKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeech---HHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhH
Confidence            3567778999999999999998 66788999999984   44567899999999996 99999999987664  446899


Q ss_pred             EecCCCCCHHHHHhcCCCCHHHHHHHHHhC
Q 011025          466 YEYMPNKSLDVHLFGLSLSLSIKCYLLYIL  495 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~L  495 (495)
                      +||+.+.+...+.. .-...+++.++.++|
T Consensus       114 FE~v~n~Dfk~ly~-tl~d~dIryY~~elL  142 (338)
T KOG0668|consen  114 FEYVNNTDFKQLYP-TLTDYDIRYYIYELL  142 (338)
T ss_pred             hhhhccccHHHHhh-hhchhhHHHHHHHHH
Confidence            99999998776443 334555666666654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.38  E-value=3.4e-08  Score=102.82  Aligned_cols=93  Identities=24%  Similarity=0.435  Sum_probs=82.8

Q ss_pred             HhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .+.++|.....+|.|.||.|||+. ...++.+|||.++.......+-...|+-++...+||||+.++|.....+..|+.|
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            356778888999999999999998 5578999999998776667777889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+.+|+|.+..+.
T Consensus        92 EycgggslQdiy~~  105 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHV  105 (829)
T ss_pred             EecCCCcccceeee
Confidence            99999999987663

>PHA03210 serine/threonine kinase US3; Provisional

Probab=98.37  E-value=1.3e-06  Score=93.31  Aligned_cols=92  Identities=17%  Similarity=0.319  Sum_probs=68.5

Q ss_pred             hcCCcccccccccCCceeEEeeeecC--CcEEEEEE--------------cc---cCChhhHHHHHHHHHHHHcCCCCCc
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLAD--GKAIAVKR--------------LS---RTSGQGLQEFKNEVNLIAKLQHKNL  449 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~--g~~VaVK~--------------l~---~~~~~~~~~f~~E~~~l~~l~H~ni  449 (495)
                      ..++|...++||+|+||.||++....  +...++|.              +.   .........+.+|+.++.+++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            34679999999999999999886422  22222221              11   1112234568999999999999999


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCCHHHHHhcC
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +++++++...+..++++|++ .++|.+++...
T Consensus       226 v~l~~~~~~~~~~~lv~e~~-~~~l~~~l~~~  256 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKY-DFDLYSFMYDE  256 (501)
T ss_pred             CcEeEEEEECCeeEEEEecc-ccCHHHHHhhc
Confidence            99999999999999999998 46788887654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.36  E-value=1.8e-06  Score=80.82  Aligned_cols=84  Identities=11%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCCh--------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG--------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~--------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++||+|++|.||+|.. .|..|+||.......        .....+.+|+.++..++|+|+.....++...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5799999999999987 677899998654321        1124688999999999999998888777777788999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        81 ~~G~~L~~~~~~~   93 (211)
T PRK14879         81 IEGEPLKDLINSN   93 (211)
T ss_pred             eCCcCHHHHHHhc
Confidence            9999999998654

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=98.34  E-value=2.6e-06  Score=85.71  Aligned_cols=89  Identities=24%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             CcccccccccCCceeEEeeeec-C--CcEEEEEEcccC--ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC----CE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA-D--GKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG----QE  461 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~-~--g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~----~~  461 (495)
                      +|...+.||+|+||.||++... .  +..+|+|.++..  .....+.+.+|+.++.++ +||||+++++.+...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            3566788999999999999953 3  778999998743  222356788999999999 599999999876432    34


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++++||++ ++|.+++...
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~   99 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSG   99 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcC
Confidence            688889885 7899998654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.34  E-value=2.8e-06  Score=80.24  Aligned_cols=80  Identities=28%  Similarity=0.403  Sum_probs=70.6

Q ss_pred             CceeEEeeeec-CCcEEEEEEcccCChhh-HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHHHHHhc
Q 011025          403 GFGPVYKGTLA-DGKAIAVKRLSRTSGQG-LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       403 ~fG~Vykg~~~-~g~~VaVK~l~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      +||.||++... +++.+++|.+....... .+.+.+|+..+.+++|+|++++.+.+......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999964 58999999998655444 68899999999999999999999999998999999999999999999976


Q ss_pred             CC
Q 011025          481 LS  482 (495)
Q Consensus       481 ~~  482 (495)
                      ..
T Consensus        81 ~~   82 (244)
T smart00220       81 RG   82 (244)
T ss_pred             cc
Confidence            54

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.33  E-value=1.4e-06  Score=80.50  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCCh--hh-------HHHH-----------------HHHHHHHHcCCCCCc
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG--QG-------LQEF-----------------KNEVNLIAKLQHKNL  449 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~--~~-------~~~f-----------------~~E~~~l~~l~H~ni  449 (495)
                      ...||+|+||.||+|..++|+.||||.++....  ..       ...|                 .+|+..+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            357999999999999977899999999975321  11       1122                 349999999988877


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCCHHHH
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKSLDVH  477 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~  477 (495)
                      .......  ....+|||||+++++|...
T Consensus        82 ~~p~~~~--~~~~~iVmE~i~g~~l~~~  107 (190)
T cd05147          82 PCPEPIL--LKSHVLVMEFIGDDGWAAP  107 (190)
T ss_pred             CCCcEEE--ecCCEEEEEEeCCCCCcch
Confidence            5433322  2234899999999887655

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.26  E-value=2.6e-06  Score=79.12  Aligned_cols=83  Identities=16%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             ccccCCceeEEeeeecCCcEEEEEEcccCC---h-----hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTS---G-----QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       398 ~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~---~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .||+|+||.||+|.. +|..|++|......   +     .....+.+|+.++..++|+++.....+....+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 67889999865321   1     11356789999999999988766666666677779999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++++|.+++...
T Consensus        80 ~g~~l~~~~~~~   91 (199)
T TIGR03724        80 EGKPLKDVIEEG   91 (199)
T ss_pred             CCccHHHHHhhc
Confidence            999999988654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=98.26  E-value=1.6e-06  Score=89.32  Aligned_cols=91  Identities=19%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh--------hhHHHHHHHHHHHHcCC---CCCccceEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG--------QGLQEFKNEVNLIAKLQ---HKNLVRLLGCCLE  458 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~--------~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~  458 (495)
                      .+|+...++|+|+||.|+.+..+ +...|+||.+.+..-        ........||.+|+.++   |+||++++.++..
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            45778889999999999999954 466899999975421        11223567999999997   9999999999999


Q ss_pred             CCEEEEEEecC-CCCCHHHHHhcC
Q 011025          459 GQELLLIYEYM-PNKSLDVHLFGL  481 (495)
Q Consensus       459 ~~~~~lv~Ey~-~~GsL~~~L~~~  481 (495)
                      ++.++|++|-. ++-+|.+||..+
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~k  664 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFK  664 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhcc
Confidence            99999999965 567899998643

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.20  E-value=5.3e-06  Score=78.46  Aligned_cols=89  Identities=12%  Similarity=0.094  Sum_probs=70.7

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCCh---hhHHH------HHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG---QGLQE------FKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~---~~~~~------f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      ...+|...+++|+|+||.||.... ++..+++|.+.+...   ...+.      |.+|+..+.+++|++|..+..+....
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            457889999999999999998655 577899999975422   21222      68999999999999999988774422


Q ss_pred             --------CEEEEEEecCCCCCHHHHH
Q 011025          460 --------QELLLIYEYMPNKSLDVHL  478 (495)
Q Consensus       460 --------~~~~lv~Ey~~~GsL~~~L  478 (495)
                              +..+|+|||+++.+|.++.
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~  134 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMP  134 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhh
Confidence                    3579999999999998874

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.18  E-value=6e-06  Score=88.84  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEE-cccC-C------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKR-LSRT-S------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~-l~~~-~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      .+...++||+|+||.||+|.+.+. .+++|. +.+. .      ....+.+.+|+.++..++|+|++....+....++.+
T Consensus       334 ~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        334 RKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             ccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence            345578999999999999987444 344433 2211 1      112356899999999999999998887777777789


Q ss_pred             EEEecCCCCCHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLF  479 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~  479 (495)
                      +||||+++++|.+++.
T Consensus       413 lv~E~~~g~~L~~~l~  428 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE  428 (535)
T ss_pred             EEEEecCCCcHHHHHH
Confidence            9999999999999986

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=98.18  E-value=5.2e-06  Score=79.29  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=62.2

Q ss_pred             CCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHHHHHhc
Q 011025          402 GGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       402 G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      |.||.||++.- .+++.+++|.++..+     .+.+|...+....||||+++++.+...+..++++||+++|+|.+++..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            78999999984 568899999997543     334555556666799999999999988999999999999999999865


Q ss_pred             C
Q 011025          481 L  481 (495)
Q Consensus       481 ~  481 (495)
                      .
T Consensus        79 ~   79 (237)
T cd05576          79 F   79 (237)
T ss_pred             h
Confidence            3

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.17  E-value=7.4e-07  Score=85.75  Aligned_cols=93  Identities=25%  Similarity=0.269  Sum_probs=78.8

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|.||+|.... ...++..|+|++++.-   ...+..-+.|-+++...+||-+..|.-.+...+.++.|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            4678888999999999999887 4578999999998652   33445567889999999999999998888889999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      |||..+|.|.-+|...+
T Consensus       247 MeyanGGeLf~HLsrer  263 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER  263 (516)
T ss_pred             EEEccCceEeeehhhhh
Confidence            99999999998887544

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=2.5e-06  Score=88.60  Aligned_cols=104  Identities=19%  Similarity=0.346  Sum_probs=83.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh---hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ..-|...+.||-|+||+|..+. .+.....|.|.|++.+.   ........|-.||+....++||+|.-.+.+.+.+|+|
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence            3567788899999999999887 44566789999987653   3345678899999999999999999888889999999


Q ss_pred             EecCCCCCHHHHHhcCC-CCHH-HHHHHHH
Q 011025          466 YEYMPNKSLDVHLFGLS-LSLS-IKCYLLY  493 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~  493 (495)
                      |||+++|++..+|..-. ...+ .+.+|++
T Consensus       708 MdYIPGGDmMSLLIrmgIFeE~LARFYIAE  737 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMGIFEEDLARFYIAE  737 (1034)
T ss_pred             EeccCCccHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999886543 3333 4555554

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.17  E-value=9.5e-06  Score=74.98  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChh--h------------------------HHHHHHHHHHHHcCCCCCc
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQ--G------------------------LQEFKNEVNLIAKLQHKNL  449 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~--~------------------------~~~f~~E~~~l~~l~H~ni  449 (495)
                      ...||+|+||.||+|...+|+.||||+++.....  .                        ...+..|...+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3579999999999999768999999999754211  0                        1224678999999999998


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCCHHH-HHhc
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKSLDV-HLFG  480 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~GsL~~-~L~~  480 (495)
                      .....+...  +.+|||||++++++.. .+..
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~  111 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKD  111 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhh
Confidence            655544332  3489999999886543 3443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=8.4e-07  Score=98.32  Aligned_cols=79  Identities=34%  Similarity=0.529  Sum_probs=62.6

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      -..+|.+.+.||+|+||.|||+.- =+|+..|||+++.. +.+.-....+|+.++++|+|||||+....+.+.....-++
T Consensus       477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~  556 (1351)
T KOG1035|consen  477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVL  556 (1351)
T ss_pred             HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccc
Confidence            345788889999999999999982 38999999999854 3344567889999999999999999988877654443333


Q ss_pred             e
Q 011025          467 E  467 (495)
Q Consensus       467 E  467 (495)
                      |
T Consensus       557 e  557 (1351)
T KOG1035|consen  557 E  557 (1351)
T ss_pred             c
Confidence            3

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=4.2e-06  Score=85.90  Aligned_cols=95  Identities=22%  Similarity=0.335  Sum_probs=80.4

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcc--cCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLS--RTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~--~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..|+..++||+||-.+|||+...+.+.+|+|.+.  ..+.+....|.+|+.+|.+| .|.+|++|+.+-..++.+|||||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            4567778999999999999998777888888775  34667788999999999999 59999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCHH
Q 011025          468 YMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~  486 (495)
                      |- .-+|..+|........
T Consensus       441 ~G-d~DL~kiL~k~~~~~~  458 (677)
T KOG0596|consen  441 CG-DIDLNKILKKKKSIDP  458 (677)
T ss_pred             cc-cccHHHHHHhccCCCc
Confidence            86 6789999987654433

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=98.02  E-value=5.8e-06  Score=78.01  Aligned_cols=105  Identities=17%  Similarity=0.239  Sum_probs=80.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC-----h---hhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS-----G---QGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~-----~---~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      -..+...+.||+|..+.|.+.. -+.|++.|+|++....     +   .-.++-.+|+.++.++ .||+|+++..++..+
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            3456667889999999888876 4568889999986321     1   1245567899999998 799999999999989


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      .-.++|+|.|+.|.|.+||...-  .+...+..|+++
T Consensus        96 sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrql  132 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQL  132 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHH
Confidence            88999999999999999997543  233345555554

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=97.99  E-value=2.1e-06  Score=80.70  Aligned_cols=86  Identities=27%  Similarity=0.413  Sum_probs=70.2

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++.....||.|.||.|+|=. .+.|+..|||+++... ..+.++++.|.+...+- +-||||++.|.+...+..|+-||.
T Consensus        65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMEL  144 (361)
T KOG1006|consen   65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMEL  144 (361)
T ss_pred             hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHH
Confidence            34445679999999999987 4579999999998654 35567888888765554 789999999999999999999999


Q ss_pred             CCCCCHHHHH
Q 011025          469 MPNKSLDVHL  478 (495)
Q Consensus       469 ~~~GsL~~~L  478 (495)
                      | .-||+.+.
T Consensus       145 M-d~SlDklY  153 (361)
T KOG1006|consen  145 M-DISLDKLY  153 (361)
T ss_pred             H-hhhHHHHH
Confidence            9 56777654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=97.97  E-value=3e-05  Score=72.00  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCCh--h--------------------hHHHHHHHHHHHHcCCCCC-
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG--Q--------------------GLQEFKNEVNLIAKLQHKN-  448 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~--~--------------------~~~~f~~E~~~l~~l~H~n-  448 (495)
                      .+...+.||+|+||.||++..++|+.|+||+++....  .                    ....+..|..++..+.|++ 
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            3666789999999999999987899999998764221  0                    1123678888999998874 


Q ss_pred             -ccceEEEEEeCCEEEEEEecCCCCCHHHHHh
Q 011025          449 -LVRLLGCCLEGQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       449 -iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                       +...++    ....+++|||+++++|.....
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~~~  123 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRVRV  123 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhccc
Confidence             344433    345689999999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.90  E-value=2.1e-06  Score=80.82  Aligned_cols=87  Identities=26%  Similarity=0.434  Sum_probs=73.9

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEEccc--CChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~--~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      ...+|.+..-|+.|+|.+ +|..+++|++..  .+..-..+|..|.-.+.-+.||||+.++|.|..+..+.++..||+.|
T Consensus       194 l~tkl~e~hsgelwrgrw-qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~g  272 (448)
T KOG0195|consen  194 LITKLAESHSGELWRGRW-QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFG  272 (448)
T ss_pred             hhhhhccCCCcccccccc-cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccch
Confidence            345788888899999998 677888888863  33444568999998888899999999999999999999999999999


Q ss_pred             CHHHHHhcCC
Q 011025          473 SLDVHLFGLS  482 (495)
Q Consensus       473 sL~~~L~~~~  482 (495)
                      ||...|+..+
T Consensus       273 slynvlhe~t  282 (448)
T KOG0195|consen  273 SLYNVLHEQT  282 (448)
T ss_pred             HHHHHHhcCc
Confidence            9999998654

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.85  E-value=3e-05  Score=83.76  Aligned_cols=90  Identities=20%  Similarity=0.331  Sum_probs=59.6

Q ss_pred             hcCCcccccccccCCceeEEeeeec-C----CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEE------EE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-D----GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC------CL  457 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~----g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~------~~  457 (495)
                      ..++|...++||+|+||.||+|... +    +..||||.+.....  .+.+.+|.  +....+.++..+...      +.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e~--l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNER--VRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHHH--HHhhchhhHHHHHHhhhcccccc
Confidence            4568899999999999999999963 4    68999999864322  12222221  111222222222111      23


Q ss_pred             eCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          458 EGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ...+.+||+||+++++|.+++....
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~  230 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKE  230 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcC
Confidence            4667899999999999999997643

>smart00090 RIO RIO-like kinase

Probab=97.82  E-value=5.3e-05  Score=72.60  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             CcccccccccCCceeEEeee--ecCCcEEEEEEcccCChh------------------------hHHHHHHHHHHHHcCC
Q 011025          392 HFSDENKLGQGGFGPVYKGT--LADGKAIAVKRLSRTSGQ------------------------GLQEFKNEVNLIAKLQ  445 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~--~~~g~~VaVK~l~~~~~~------------------------~~~~f~~E~~~l~~l~  445 (495)
                      .|...+.||+|+||.||+|.  ..+|+.||+|.++.....                        ....+..|+..+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46677899999999999998  568999999998743210                        0123568999999997


Q ss_pred             CCCc--cceEEEEEeCCEEEEEEecCCCCCHHHHH
Q 011025          446 HKNL--VRLLGCCLEGQELLLIYEYMPNKSLDVHL  478 (495)
Q Consensus       446 H~ni--v~l~g~~~~~~~~~lv~Ey~~~GsL~~~L  478 (495)
                      |.++  .++++.    ...++||||+++++|..++
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~  139 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPR  139 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccc
Confidence            6433  333332    2358999999998887765

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=97.79  E-value=1.2e-05  Score=80.94  Aligned_cols=94  Identities=28%  Similarity=0.404  Sum_probs=78.4

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..+.|..-++||+|+||.||-.+. .+|...|.|.+.+..   .++...-++|-.++.+++.+-||.+--.+.+.+.++|
T Consensus       183 t~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCL  262 (591)
T ss_pred             cccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEE
Confidence            345688889999999999998884 468888998886432   2344557899999999999999999888888999999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      |+..|.+|+|+.+|....
T Consensus       263 VLtlMNGGDLkfHiyn~g  280 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHIYNHG  280 (591)
T ss_pred             EEEeecCCceeEEeeccC
Confidence            999999999999997654

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.78  E-value=1e-05  Score=78.25  Aligned_cols=94  Identities=18%  Similarity=0.299  Sum_probs=78.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  464 (495)
                      ..+|.+..+||+|+|.+|..+.+ +..+..|+|++++.   ..+++...+.|-.++... +||-+|.|+.++.....++.
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlff  328 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFF  328 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEE
Confidence            45788889999999999999885 45778899999853   345567778888888776 79999999999998999999


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      |.||+++|+|..++...++
T Consensus       329 vieyv~ggdlmfhmqrqrk  347 (593)
T KOG0695|consen  329 VIEYVNGGDLMFHMQRQRK  347 (593)
T ss_pred             EEEEecCcceeeehhhhhc
Confidence            9999999999988876543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=97.78  E-value=3.1e-05  Score=77.22  Aligned_cols=102  Identities=27%  Similarity=0.483  Sum_probs=82.6

Q ss_pred             hcCCcccccccccCCceeEEeeee-c---CCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-A---DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~---~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ....|...++||+|.|+.||+++. .   ..+.||+|.+...+  ......+|++++..+ .+.||+++.++....+...
T Consensus        34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            345677889999999999999984 2   46789999997543  234578999999999 5899999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      +|+||+++-.-.+++++-. -...+++++-
T Consensus       112 ivlp~~~H~~f~~l~~~l~-~~~i~~Yl~~  140 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRSLS-LAEIRWYLRN  140 (418)
T ss_pred             EEecccCccCHHHHHhcCC-HHHHHHHHHH
Confidence            9999999999999998765 2234555543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=97.72  E-value=5.4e-05  Score=65.88  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC--CCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH--KNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .+.||+|.++.||++... +..+++|.......  ...+.+|+.++..++|  .++.++++....++..++++||++++.
T Consensus         3 ~~~i~~g~~~~v~~~~~~-~~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTK-DEDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             ceecccccccceEEEEec-CCeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            467999999999999974 47899999875433  5678999999999976  588888888777778999999999988


Q ss_pred             HHHH
Q 011025          474 LDVH  477 (495)
Q Consensus       474 L~~~  477 (495)
                      +..+
T Consensus        80 ~~~~   83 (155)
T cd05120          80 LDEV   83 (155)
T ss_pred             cccC
Confidence            8654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=1.2e-06  Score=81.69  Aligned_cols=92  Identities=25%  Similarity=0.493  Sum_probs=68.8

Q ss_pred             cccccccccCCceeEEeeee-cCCcEEEEEEccc-CChhh-HHHHHHHHHHHHcCCCCCccceEEEEEe--------CCE
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSR-TSGQG-LQEFKNEVNLIAKLQHKNLVRLLGCCLE--------GQE  461 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~-~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~--------~~~  461 (495)
                      +....+||+|.||+|+++.- +.|+.||+|..-- ....+ -..-++|+.++..|+|+|++.++.+|..        ...
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            44467899999999999984 4577888876642 22222 2345789999999999999999988854        234


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCH
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSL  485 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~  485 (495)
                      .+||++|+++ +|.-+|.+...+.
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~~vr~  121 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNRKVRF  121 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCccccc
Confidence            7999999965 7888888765433

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.67  E-value=8.5e-06  Score=80.87  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=73.0

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ...+|....+||+|+||+|..+..+ ..+..|||+|++.-   ..+.+--+.|-++++-. +-|-+++|+.++..-+.++
T Consensus       347 ~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLy  426 (683)
T KOG0696|consen  347 KATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLY  426 (683)
T ss_pred             eecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhee
Confidence            3457888899999999999999854 46778999998642   22333345677777766 5678999999888889999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      .||||+.+|+|..++..
T Consensus       427 FVMEyvnGGDLMyhiQQ  443 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQ  443 (683)
T ss_pred             eEEEEecCchhhhHHHH
Confidence            99999999999998864

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=97.65  E-value=4.8e-05  Score=81.79  Aligned_cols=86  Identities=28%  Similarity=0.388  Sum_probs=71.0

Q ss_pred             CCcccccccccCCcee-EEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGP-VYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~-Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .-|...+++|.|.-|+ ||+|.+ +|++||||++-..   ...-..+|+..+..- +|||||+..|....+.-.||..|.
T Consensus       509 ~~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  509 LFFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eeeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            3466677899999876 799999 7899999999732   233456899998887 799999999888888889999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      + .-+|.+++..+
T Consensus       585 C-~~sL~dlie~~  596 (903)
T KOG1027|consen  585 C-ACSLQDLIESS  596 (903)
T ss_pred             h-hhhHHHHHhcc
Confidence            8 67899999874

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.55  E-value=0.00017  Score=67.24  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=73.4

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC-CCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH-KNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ...|...++||+|+||.+|.|. +.+|+.||+|.=+....  ..++.-|..+..-|+| ..|..+.-+..+...-.+|||
T Consensus        14 ~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~--hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   14 GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK--HPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC--CcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            3568889999999999999998 67899999997654322  2356788888888875 456666666666666799999


Q ss_pred             cCCCCCHHHHHhcCCCCHHHH
Q 011025          468 YMPNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~~~  488 (495)
                      .+ +.||+++..-+.+..+.+
T Consensus        92 LL-GPsLEdLfnfC~R~ftmk  111 (341)
T KOG1163|consen   92 LL-GPSLEDLFNFCSRRFTMK  111 (341)
T ss_pred             cc-CccHHHHHHHHhhhhhHH
Confidence            88 889999887666555543

>PHA02882 putative serine/threonine kinase; Provisional

Probab=97.52  E-value=0.00057  Score=67.45  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             CCcccccccccCCceeEEeeeecC----CcEEEEEEcccCChhh-----------HHHHHHHHHHHHcCCCCCccceEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRTSGQG-----------LQEFKNEVNLIAKLQHKNLVRLLGC  455 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~~~~~-----------~~~f~~E~~~l~~l~H~niv~l~g~  455 (495)
                      ..|...++||+|+||.||+|...+    +..+++|.........           ......+...+..++|+|++++.++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            568888999999999999998543    3456666543222111           0112333445567789999999987


Q ss_pred             EEeCC----EEEEEEecCCCCCHHHHHhc
Q 011025          456 CLEGQ----ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       456 ~~~~~----~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      +....    ..++++|+.. .++.+++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  119 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLV-ENTKEIFKR  119 (294)
T ss_pred             eeEecCCceEEEEEEehhc-cCHHHHHHh
Confidence            65543    3467788763 466666653

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.46  E-value=0.00013  Score=76.21  Aligned_cols=84  Identities=21%  Similarity=0.267  Sum_probs=58.1

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChhhH----------------------------------------HHHH
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGL----------------------------------------QEFK  435 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~----------------------------------------~~f~  435 (495)
                      .+.||.|++|+||+|.+.+|+.||||+.++...+..                                        -+|.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            367999999999999999999999999875421110                                        0244


Q ss_pred             HHHHHHHcC----CCCCccceEEEEEe-CCEEEEEEecCCCCCHHHHHh
Q 011025          436 NEVNLIAKL----QHKNLVRLLGCCLE-GQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       436 ~E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      +|...+.++    +|.+-+.+-.++.. ....+|||||+++++|.+++.
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~  250 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAA  250 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHH
Confidence            555555544    34333444344432 456799999999999998875

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=97.43  E-value=6.3e-05  Score=72.10  Aligned_cols=88  Identities=23%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             cCCcccc-cccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe----CCEE
Q 011025          390 TNHFSDE-NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE----GQEL  462 (495)
Q Consensus       390 t~~~~~~-~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~----~~~~  462 (495)
                      +++|+.. ++||-|--|+|.... ...++..|+|+|...     ..-.+|+++.=.. .|||||+++.++..    ..-+
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds-----~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcL  134 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS-----PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCL  134 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC-----HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceee
Confidence            3444443 589999999999887 456888999999743     3446778765544 79999999998754    3457


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|||+|+||.|...+.++.
T Consensus       135 LiVmE~meGGeLfsriq~~g  154 (400)
T KOG0604|consen  135 LIVMECMEGGELFSRIQDRG  154 (400)
T ss_pred             EeeeecccchHHHHHHHHcc
Confidence            89999999999999997655

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.43  E-value=1.2e-05  Score=75.93  Aligned_cols=101  Identities=24%  Similarity=0.414  Sum_probs=75.6

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QELLLI  465 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~lv  465 (495)
                      ...+.||-|+||.||.... ++|+.|+.|.+...  +-...+.+.+|+.++.-++|.|++..+.+....     +++|++
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            3467899999999999884 46999999988643  223356788999999999999999998876543     357889


Q ss_pred             EecCCCCCHHHHHhcCC--CCHHHHHHHHHhC
Q 011025          466 YEYMPNKSLDVHLFGLS--LSLSIKCYLLYIL  495 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~L  495 (495)
                      +|.| ..+|+..|-++.  ....++-++.|||
T Consensus       136 TELm-QSDLHKIIVSPQ~Ls~DHvKVFlYQIL  166 (449)
T KOG0664|consen  136 TELM-QSDLHKIIVSPQALTPDHVKVFVYQIL  166 (449)
T ss_pred             HHHH-HhhhhheeccCCCCCcchhhhhHHHHH
Confidence            9988 567888776544  2233566665554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.39  E-value=0.00041  Score=63.49  Aligned_cols=74  Identities=18%  Similarity=0.321  Sum_probs=48.5

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCCh--hhHHHH----------------------HHHHHHHHcCCCCC--c
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG--QGLQEF----------------------KNEVNLIAKLQHKN--L  449 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~--~~~~~f----------------------~~E~~~l~~l~H~n--i  449 (495)
                      .+.||+|+||.||++...+++.||||+++....  .....+                      ..|...+..+.+..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            467999999999999977899999999875321  111111                      34555555554432  3


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCC
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .+.++.    ...++|+||++++.
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~  101 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDG  101 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCC
Confidence            333332    34589999999943

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.28  E-value=0.0006  Score=69.47  Aligned_cols=88  Identities=20%  Similarity=0.335  Sum_probs=70.0

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-----C---CCccceEEEEEe---
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-----H---KNLVRLLGCCLE---  458 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-----H---~niv~l~g~~~~---  458 (495)
                      .+|...++||=|.|.+||.+. ..+.+.||+|+.+.. ..-.+.-+.||.+|.+++     |   ..||+|+..+.-   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            578888999999999999998 456789999999743 334566789999999873     3   358999988754   


Q ss_pred             -CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 -GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 -~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                       +...+||+|++ +-+|..+|..
T Consensus       157 NG~HVCMVfEvL-GdnLLklI~~  178 (590)
T KOG1290|consen  157 NGQHVCMVFEVL-GDNLLKLIKY  178 (590)
T ss_pred             CCcEEEEEehhh-hhHHHHHHHH
Confidence             45789999999 6678777764

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.28  E-value=0.0021  Score=62.57  Aligned_cols=87  Identities=31%  Similarity=0.508  Sum_probs=73.0

Q ss_pred             cccccccccCCceeEEeeeecCCcEEEEEEcccCChh---hHHHHHHHHHHHHcCCCC-CccceEEEEEeCCEEEEEEec
Q 011025          393 FSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQ---GLQEFKNEVNLIAKLQHK-NLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~---~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      |.....||.|.||.||++...  ..+++|.+......   ....|.+|+.++..+.|+ +++++..........++++|+
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            445678999999999999965  78899999754322   467899999999999988 799999999777778999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +.+++|.+++...
T Consensus        80 ~~~~~l~~~~~~~   92 (384)
T COG0515          80 VDGGSLEDLLKKI   92 (384)
T ss_pred             CCCCcHHHHHHhc
Confidence            9999999888754

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=97.14  E-value=0.0025  Score=61.11  Aligned_cols=89  Identities=19%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             ccccc-cCCceeEEeeeecCCcEEEEEEcccCC-------------hhhHHHHHHHHHHHHcCCCCCc--cceEEEEEeC
Q 011025          396 ENKLG-QGGFGPVYKGTLADGKAIAVKRLSRTS-------------GQGLQEFKNEVNLIAKLQHKNL--VRLLGCCLEG  459 (495)
Q Consensus       396 ~~~LG-~G~fG~Vykg~~~~g~~VaVK~l~~~~-------------~~~~~~f~~E~~~l~~l~H~ni--v~l~g~~~~~  459 (495)
                      ...|| .|+.|.||+... +++.++||......             ......+.+|+.++..++|+++  ...+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            45687 889999999887 47788888875311             1223567899999999998885  6677765432


Q ss_pred             -C---EEEEEEecCCC-CCHHHHHhcCCCCH
Q 011025          460 -Q---ELLLIYEYMPN-KSLDVHLFGLSLSL  485 (495)
Q Consensus       460 -~---~~~lv~Ey~~~-GsL~~~L~~~~~~~  485 (495)
                       .   ..++|+||+++ .+|.+++.......
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~  145 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLSE  145 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCCH
Confidence             2   23599999997 79999987654333

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.11  E-value=0.002  Score=60.09  Aligned_cols=79  Identities=15%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEEcccCCh--h--hHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecC
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG--Q--GLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~--~--~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ....|++|+||+||...- .+..++.+.+.....  .  ...-|.+|+.+|.+|+ |+++.+++++    +..++++||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            356899999999996654 677777777764322  1  1235789999999995 5889998875    4469999999


Q ss_pred             CCCCHHHHH
Q 011025          470 PNKSLDVHL  478 (495)
Q Consensus       470 ~~GsL~~~L  478 (495)
                      ++.+|...+
T Consensus        81 ~G~~L~~~~   89 (218)
T PRK12274         81 AGAAMYQRP   89 (218)
T ss_pred             cCccHHhhh
Confidence            999997654

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=97.11  E-value=0.00046  Score=68.29  Aligned_cols=91  Identities=19%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC--CC----ccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH--KN----LVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H--~n----iv~l~g~~~~~~~~  462 (495)
                      +.+|....++|+|.||.|.+..- ..+..||||+++.-. .-.+.-+-|+.++.++.+  |+    +|.+..++.-.+..
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~-kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi  166 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD-KYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI  166 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH-HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence            56788888999999999999983 347899999997432 334567789999999832  22    55666667778899


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+|.+ +-|+.+||....
T Consensus       167 Civfell-G~S~~dFlk~N~  185 (415)
T KOG0671|consen  167 CIVFELL-GLSTFDFLKENN  185 (415)
T ss_pred             EEEEecc-ChhHHHHhccCC
Confidence            9999988 669999998743

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.10  E-value=0.0013  Score=70.07  Aligned_cols=86  Identities=16%  Similarity=0.219  Sum_probs=58.6

Q ss_pred             CCcccccccccCCceeEEeeeecC-CcEEEEEEcccCChh------------------------------hHH-------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQ------------------------------GLQ-------  432 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~~~~------------------------------~~~-------  432 (495)
                      ..|+. +.||+|++|+||++.+.+ |+.||||++++.-.+                              -.+       
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34555 789999999999999877 999999999754210                              001       


Q ss_pred             ---HHHHHHHHHHcC----CCCCccceEEEEEe-CCEEEEEEecCCCCCHHHH
Q 011025          433 ---EFKNEVNLIAKL----QHKNLVRLLGCCLE-GQELLLIYEYMPNKSLDVH  477 (495)
Q Consensus       433 ---~f~~E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~  477 (495)
                         +|.+|+..+.++    .+.+.+.+-.+.++ ..+.+|||||++|+.|.++
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~  251 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDV  251 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhH
Confidence               244455444444    24444544444443 4567899999999999875

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.01  E-value=0.00058  Score=71.75  Aligned_cols=101  Identities=19%  Similarity=0.271  Sum_probs=76.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++.+.....+|.|+|+.|-.+. .+.++.-+||++.+..    .+-.+|+.++... +||||+++.+++..+.+.|+|+|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            5566677789999999998887 5668889999998652    2234566555554 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCC-HHHHHHHHHh
Q 011025          468 YMPNKSLDVHLFGLSLS-LSIKCYLLYI  494 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~-~~~~~~l~~~  494 (495)
                      .+.+|.|.+-++..... .....|++++
T Consensus       397 ~l~g~ell~ri~~~~~~~~e~~~w~~~l  424 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPEFCSEASQWAAEL  424 (612)
T ss_pred             hccccHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999988877754433 2233455554

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.97  E-value=0.0017  Score=63.40  Aligned_cols=93  Identities=22%  Similarity=0.339  Sum_probs=67.3

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      -+|..+++||+|.||.++.|+ +-++++||||.=+..+.  .-++..|-+..+.| .-++|-...-+-..+..-.||+|.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~--APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE--APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccCC--cchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            368889999999999999998 66899999997764332  22445566666666 457777766555555556899998


Q ss_pred             CCCCCHHHHHhcCCCCHH
Q 011025          469 MPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~~~~  486 (495)
                      + +-||+|+..=+.+..+
T Consensus       106 L-GPSLEDLFD~CgR~FS  122 (449)
T KOG1165|consen  106 L-GPSLEDLFDLCGRRFS  122 (449)
T ss_pred             h-CcCHHHHHHHhcCccc
Confidence            8 8899998754444444

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=96.92  E-value=0.00087  Score=63.62  Aligned_cols=93  Identities=16%  Similarity=0.343  Sum_probs=70.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEE-EeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCC-LEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~-~~~~~~~lv~E  467 (495)
                      +.|...+.||+|.||.+..+.. +....+++|.++..- ....+|.+|..---.| .|.||+.-..+. ...+-+..++|
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            4577788999999999999884 456788999887532 2357899998654445 589999876554 44567789999


Q ss_pred             cCCCCCHHHHHhcCCCC
Q 011025          468 YMPNKSLDVHLFGLSLS  484 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~  484 (495)
                      |+|.|||..-+......
T Consensus       103 ~aP~gdL~snv~~~Gig  119 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIG  119 (378)
T ss_pred             cCccchhhhhcCccccc
Confidence            99999999888765433

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=96.92  E-value=0.00068  Score=61.93  Aligned_cols=92  Identities=23%  Similarity=0.382  Sum_probs=72.6

Q ss_pred             HHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC-ChhhHHHHHHHHHHHHc-CCCCCccceEEEEEeCCEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAK-LQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~  463 (495)
                      +.+.+.+.....||+|+||.|-+-. ..+|...|||+++.. ..+.....++|+.+..+ ..-|-+|.+.|........|
T Consensus        42 eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvw  121 (282)
T KOG0984|consen   42 EVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVW  121 (282)
T ss_pred             ccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEE
Confidence            3444556667789999999987665 357999999999854 34556778889987555 47899999999999999999


Q ss_pred             EEEecCCCCCHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLF  479 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~  479 (495)
                      +-||.| .-||+.|-+
T Consensus       122 IcME~M-~tSldkfy~  136 (282)
T KOG0984|consen  122 ICMELM-DTSLDKFYR  136 (282)
T ss_pred             EeHHHh-hhhHHHHHH
Confidence            999999 568887764

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.90  E-value=0.0028  Score=63.66  Aligned_cols=89  Identities=22%  Similarity=0.299  Sum_probs=66.8

Q ss_pred             CcccccccccCCceeEEeeeecC--CcEEEEEEcccCChhhHHHHHHHHHHHHcCCC----CCccceEEEE-EeCCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH----KNLVRLLGCC-LEGQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~--g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H----~niv~l~g~~-~~~~~~~l  464 (495)
                      .|....+||+|+||.||.+.-..  ...+|+|.-..........+..|..++..+.+    +++.+++... ......++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            78889999999999999999533  34788888775433332367888888888863    4677777666 35566799


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ||+.+ +.+|.++....
T Consensus        99 VM~l~-G~sL~dl~~~~  114 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRN  114 (322)
T ss_pred             EEecc-CccHHHHHHhC
Confidence            99977 89999987543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.0009  Score=74.94  Aligned_cols=92  Identities=21%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC---CCCccceEEEEEeCCEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ---HKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~  463 (495)
                      +.....|.....||+|+||+||+|.-.+|+.||+|.=++.+.   ++|.-=.+++.+|+   -+.|+.+..+....+.-+
T Consensus       694 ~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~---WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~  770 (974)
T KOG1166|consen  694 EVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNP---WEFYICLQVMERLKPQMLPSIMHISSAHVFQNASV  770 (974)
T ss_pred             eecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCc---eeeeehHHHHHhhchhhhcchHHHHHHHccCCcce
Confidence            334456677788999999999999977799999998875543   34433334455554   123444444445567789


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      ||+||.+.|+|.+++...
T Consensus       771 lv~ey~~~Gtlld~~N~~  788 (974)
T KOG1166|consen  771 LVSEYSPYGTLLDLINTN  788 (974)
T ss_pred             eeeeccccccHHHhhccC
Confidence            999999999999999843

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=96.30  E-value=0.0019  Score=61.48  Aligned_cols=86  Identities=22%  Similarity=0.387  Sum_probs=67.9

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      .....||.|.-|.|||..+ +.|..+|||.+.+.+ .+..+..+..+.++.+-+ .|.||+..|++..+...++-||.| 
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM-  173 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM-  173 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH-
Confidence            3345699999999999985 568899999998764 345567778888777664 799999999999999999999988 


Q ss_pred             CCCHHHHHhc
Q 011025          471 NKSLDVHLFG  480 (495)
Q Consensus       471 ~GsL~~~L~~  480 (495)
                      .-.++.+|+.
T Consensus       174 s~C~ekLlkr  183 (391)
T KOG0983|consen  174 STCAEKLLKR  183 (391)
T ss_pred             HHHHHHHHHH
Confidence            3445555554

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=96.29  E-value=0.0086  Score=55.96  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCC--CccceEEEEEeC---CEEEEEEecCC
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHK--NLVRLLGCCLEG---QELLLIYEYMP  470 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~--niv~l~g~~~~~---~~~~lv~Ey~~  470 (495)
                      +.|+.|..+.+|+....+|+.+++|....... .....+.+|..++..+++.  ++.+++......   +..++|+||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            56899999999999886678899999865322 2345788999999998764  456677766543   25689999999


Q ss_pred             CCCHHHHHh
Q 011025          471 NKSLDVHLF  479 (495)
Q Consensus       471 ~GsL~~~L~  479 (495)
                      +++|.+.+.
T Consensus        84 G~~l~~~~~   92 (223)
T cd05154          84 GRVLRDRLL   92 (223)
T ss_pred             CEecCCCCC
Confidence            998887653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05151 ChoK Choline Kinase (ChoK)

Probab=95.85  E-value=0.021  Score=51.02  Aligned_cols=77  Identities=17%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCcc-ceEEEEEeCCEEEEEEecCCCCCHH
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV-RLLGCCLEGQELLLIYEYMPNKSLD  475 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv-~l~g~~~~~~~~~lv~Ey~~~GsL~  475 (495)
                      +.|+.|.++.||+... .++.+++|....... ....+.+|+.++..+.+.+++ ++++.  ..+..++||||+++.++.
T Consensus         4 ~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~--~~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           4 SPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYF--DPETGVLITEFIEGSELL   79 (170)
T ss_pred             eecCCcccCceEEEEE-CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEE--eCCCCeEEEEecCCCccc
Confidence            5688999999999987 477899998865432 223567889888888665654 34433  233458999999999887


Q ss_pred             HH
Q 011025          476 VH  477 (495)
Q Consensus       476 ~~  477 (495)
                      ..
T Consensus        80 ~~   81 (170)
T cd05151          80 TE   81 (170)
T ss_pred             cc
Confidence            53

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=95.61  E-value=0.0013  Score=67.42  Aligned_cols=91  Identities=21%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             CcccccccccCCceeEEeeeecCCc-EEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGK-AIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~-~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++.....||-|+||.|=.....+.. ..|+|.+++.   .....+....|-.+|-+.+.|.||+|.--+......|++||
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            4445567999999999888764332 3688888753   34445678899999999999999999888888888899999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      -+-+|.|+..|+++.
T Consensus       501 aClGGElWTiLrdRg  515 (732)
T KOG0614|consen  501 ACLGGELWTILRDRG  515 (732)
T ss_pred             hhcCchhhhhhhhcC
Confidence            999999999998754

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=95.51  E-value=0.018  Score=38.00  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=16.6

Q ss_pred             CCcceEEEEeehhhhHHHhhhheeeeeecc
Q 011025          304 RGRAISIAIGTTLSALIVVLFGSFLWYRRR  333 (495)
Q Consensus       304 ~~~~i~Iii~v~v~~l~lll~~~~~~~rrr  333 (495)
                      ....+.++++++++++++++.++++++|||
T Consensus         9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen    9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             ceEEEEEEEEechHHHHHHHHHHhheEEec
Confidence            344556666666666666555444433433

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=95.50  E-value=0.012  Score=60.71  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=68.6

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC------CCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ------HKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~------H~niv~l~g~~~~~~~~~  463 (495)
                      .+|...-..|+|-|+.|.+|. ...|..||||+|... ....+.=+.|+++|.+|+      --+.++|+-.+...++++
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN-E~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLC  510 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN-EVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLC  510 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc-hHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeE
Confidence            455555668999999999998 445889999999854 223345578999999985      236788887787889999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      ||+|-+ .-+|.+.|+.
T Consensus       511 lVFE~L-slNLRevLKK  526 (752)
T KOG0670|consen  511 LVFEPL-SLNLREVLKK  526 (752)
T ss_pred             EEehhh-hchHHHHHHH
Confidence            999987 5679999974

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=94.66  E-value=0.018  Score=56.09  Aligned_cols=100  Identities=24%  Similarity=0.319  Sum_probs=67.9

Q ss_pred             CcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------CEE
Q 011025          392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------QEL  462 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~  462 (495)
                      +|.....+|.|.= .|..+. .-.++.|++|.+...  .....+.-.+|..++..++|+|+++++.++...      .+.
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            3444556676655 444443 124788999887532  233455678999999999999999999998764      356


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      ++||||| .++|...+.-.......+..+.|
T Consensus        97 y~v~e~m-~~nl~~vi~~elDH~tis~i~yq  126 (369)
T KOG0665|consen   97 YLVMELM-DANLCQVILMELDHETISYILYQ  126 (369)
T ss_pred             HHHHHhh-hhHHHHHHHHhcchHHHHHHHHH
Confidence            9999999 67899988844333334444333

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=93.33  E-value=0.21  Score=53.12  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCChhh------------------------------HH----------HHHH
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQG------------------------------LQ----------EFKN  436 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~------------------------------~~----------~f~~  436 (495)
                      +.|+.++.|+||+|++.+|+.||||+.++.-.+.                              .+          ++.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            6789999999999999999999999986432110                              01          1234


Q ss_pred             HHHHHHcC----CCCCccceEEEEEe-CCEEEEEEecCCCCCHHHH--HhcCCCC
Q 011025          437 EVNLIAKL----QHKNLVRLLGCCLE-GQELLLIYEYMPNKSLDVH--LFGLSLS  484 (495)
Q Consensus       437 E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~Ey~~~GsL~~~--L~~~~~~  484 (495)
                      |..-+.++    ++..-+.+-.++++ ..+..|+|||++|-.+.++  +.....+
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d  265 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGID  265 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCC
Confidence            44444443    33333444455554 5778999999999999988  4443333

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=93.30  E-value=0.21  Score=45.19  Aligned_cols=80  Identities=23%  Similarity=0.329  Sum_probs=58.1

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      ....|++|.+|.||.|.+ .|..+++|.-+..++  ...+..|.+++..++..++.+=+  .. -++-.+.|||+.+-.|
T Consensus        26 v~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~ds~--r~~l~kEakiLeil~g~~~~p~v--y~-yg~~~i~me~i~G~~L   99 (201)
T COG2112          26 VEKELAKGTTSVVYLGEW-RGGEVALKVRRRDSP--RRNLEKEAKILEILAGEGVTPEV--YF-YGEDFIRMEYIDGRPL   99 (201)
T ss_pred             hhhhhhcccccEEEEeec-cCceEEEEEecCCcc--hhhHHHHHHHHHHhhhcCCCceE--EE-echhhhhhhhhcCcch
Confidence            356799999999999998 566899998775443  46788999999888876665422  11 1233456999998888


Q ss_pred             HHHHhc
Q 011025          475 DVHLFG  480 (495)
Q Consensus       475 ~~~L~~  480 (495)
                      .+.-..
T Consensus       100 ~~~~~~  105 (201)
T COG2112         100 GKLEIG  105 (201)
T ss_pred             hhhhhc
Confidence            876553

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=93.24  E-value=0.044  Score=46.40  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCC
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS  427 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~  427 (495)
                      .+.|+.|+.|+||+|.+.+|+.||||..++.-
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i   47 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPGI   47 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchHH
Confidence            46799999999999999899999999998543

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=92.02  E-value=0.27  Score=51.34  Aligned_cols=76  Identities=32%  Similarity=0.423  Sum_probs=55.5

Q ss_pred             eeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEEEEEecCCC-CCHHHHH
Q 011025          405 GPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELLLIYEYMPN-KSLDVHL  478 (495)
Q Consensus       405 G~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~Ey~~~-GsL~~~L  478 (495)
                      -.-||+.- .+|..+..|++.....+.......-++.++++.|+|+|+|..+...    +..+.+||+|.|+ ++|.++-
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            35688873 4789999999943322222233345677889999999999988763    4568999999986 8888877


Q ss_pred             hc
Q 011025          479 FG  480 (495)
Q Consensus       479 ~~  480 (495)
                      +.
T Consensus       370 F~  371 (655)
T KOG3741|consen  370 FA  371 (655)
T ss_pred             cc
Confidence            64

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=91.96  E-value=0.29  Score=52.58  Aligned_cols=80  Identities=26%  Similarity=0.314  Sum_probs=59.1

Q ss_pred             ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCCCHHHHHhcCCCCHHHHHHH
Q 011025          412 LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYL  491 (495)
Q Consensus       412 ~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l  491 (495)
                      ..++.+|.|...+..+....+...+-++.++.++||||++++......+..|||+|-+  .-|..+|.... +..+...|
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~l~-~~~v~~Gl  110 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKELG-KEEVCLGL  110 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHHhH-HHHHHHHH
Confidence            4468899999888665544455677788899999999999999888888999999987  34677776544 33344444


Q ss_pred             HHh
Q 011025          492 LYI  494 (495)
Q Consensus       492 ~~~  494 (495)
                      .+|
T Consensus       111 ~qI  113 (690)
T KOG1243|consen  111 FQI  113 (690)
T ss_pred             HHH
Confidence            443

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=90.20  E-value=2.7  Score=39.00  Aligned_cols=96  Identities=19%  Similarity=0.273  Sum_probs=67.7

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCC----------------hhhHHHHHHHHHHHHcCC------CCCccc
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS----------------GQGLQEFKNEVNLIAKLQ------HKNLVR  451 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~----------------~~~~~~f~~E~~~l~~l~------H~niv~  451 (495)
                      +....||+|+.-.||...  +.....||+.....                .....++.+|+.-...+.      +..|.+
T Consensus         4 ~~~~~i~~G~~R~cy~HP--~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r   81 (199)
T PF10707_consen    4 SESDLIAQGGERDCYQHP--DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPR   81 (199)
T ss_pred             CCCcccccCCCceEEECC--CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCccccccc
Confidence            446789999999999765  44556788886544                112456677776655554      788999


Q ss_pred             eEEEEEeCCEEEEEEecCC------CCCHHHHHhcCCCCHHHHHHH
Q 011025          452 LLGCCLEGQELLLIYEYMP------NKSLDVHLFGLSLSLSIKCYL  491 (495)
Q Consensus       452 l~g~~~~~~~~~lv~Ey~~------~GsL~~~L~~~~~~~~~~~~l  491 (495)
                      ++|...++..+-+|+|.+.      .-+|.++++...........|
T Consensus        82 ~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~~~~~~L  127 (199)
T PF10707_consen   82 FYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTEELRQAL  127 (199)
T ss_pred             EeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccHHHHHHH
Confidence            9999999888889998763      346899997766555444433

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=89.28  E-value=1  Score=47.98  Aligned_cols=82  Identities=16%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCChhh---------------------------HH----------HHHHHHH
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQG---------------------------LQ----------EFKNEVN  439 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~---------------------------~~----------~f~~E~~  439 (495)
                      +.||.-..|+||++.+++|+.||||+-++.-.+.                           .+          +|.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            5789999999999999999999999876432110                           00          1344443


Q ss_pred             HHHc----CCCCCc---cceEEEEEe-CCEEEEEEecCCCCCHHHHH
Q 011025          440 LIAK----LQHKNL---VRLLGCCLE-GQELLLIYEYMPNKSLDVHL  478 (495)
Q Consensus       440 ~l~~----l~H~ni---v~l~g~~~~-~~~~~lv~Ey~~~GsL~~~L  478 (495)
                      -..+    +.|-++   |..-.+.+. ..+..|+||||+|.-+.+..
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~  293 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLD  293 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHH
Confidence            3222    345552   223334443 45789999999998877643

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.59  E-value=2.4  Score=38.82  Aligned_cols=84  Identities=17%  Similarity=0.201  Sum_probs=60.7

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEc-ccCC--hh-----hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRL-SRTS--GQ-----GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l-~~~~--~~-----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..+++|+-..+|.+.+ -|.++.+|.= ++.-  ++     ....-.+|.+++.+++--.|-...=+..++....|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            3578999999999976 3555666644 3221  11     134567899999998765655555566677888999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++-.|+++|...
T Consensus        81 I~G~~lkd~l~~~   93 (204)
T COG3642          81 IEGELLKDALEEA   93 (204)
T ss_pred             eCChhHHHHHHhc
Confidence            9999999999876

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=87.36  E-value=4.7  Score=41.69  Aligned_cols=85  Identities=15%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             ccccccCCceeEEeeeecCC-cEEEEEEcccC------C-hhhHHHHHHHHHHHHcCC---CCCccceEEEEEeCCEEEE
Q 011025          396 ENKLGQGGFGPVYKGTLADG-KAIAVKRLSRT------S-GQGLQEFKNEVNLIAKLQ---HKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g-~~VaVK~l~~~------~-~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~l  464 (495)
                      .+.||.|.+..||+....+| +.|.||.-.+.      + +...+.+..|.+.|..+.   ...+.+++.+  ..+..++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~l  108 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVT  108 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEE
Confidence            35789999999999998776 48999985421      1 223456677777777652   2345566655  3455789


Q ss_pred             EEecCCCCC-HHHHHhcCC
Q 011025          465 IYEYMPNKS-LDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~Gs-L~~~L~~~~  482 (495)
                      ||||+++.. |++.|....
T Consensus       109 VME~L~~~~~lr~~Ll~g~  127 (401)
T PRK09550        109 VMEDLSDHKILRKGLIDGK  127 (401)
T ss_pred             EEecCCCccHHHHHHhcCC
Confidence            999998644 666665444

>PRK10593 hypothetical protein; Provisional

Probab=86.63  E-value=2.2  Score=42.27  Aligned_cols=80  Identities=10%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC---CCccceEEEEEe---CCEEEEEEe
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH---KNLVRLLGCCLE---GQELLLIYE  467 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~---~~~~~lv~E  467 (495)
                      ...+.||.|..+.||+-...++ .+.+|..+..  .....|.+|...+..|..   -.+.++++.+..   .+..+||||
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE   93 (297)
T PRK10593         17 SRVECISEQPYAALWALYDSQG-NPMPLMARSF--STPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLE   93 (297)
T ss_pred             heeeecCCccceeEEEEEcCCC-CEEEEEeccc--ccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEe
Confidence            3456799999999999876455 4666775431  123578899999988843   356777877754   356899999


Q ss_pred             cCCCCCHHH
Q 011025          468 YMPNKSLDV  476 (495)
Q Consensus       468 y~~~GsL~~  476 (495)
                      +++++++.+
T Consensus        94 ~i~G~~~~~  102 (297)
T PRK10593         94 RLRGVSVEA  102 (297)
T ss_pred             ccCCEecCC
Confidence            999987754

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=86.30  E-value=2.5  Score=40.00  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=54.5

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCc--cceEEEEEeCCEEEEEEecCCCC-
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL--VRLLGCCLEGQELLLIYEYMPNK-  472 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~ni--v~l~g~~~~~~~~~lv~Ey~~~G-  472 (495)
                      -..||+|.-+.||+.   .+...++|......  ......+|.+++..+..-++  .+.+++....+...+|||+++|. 
T Consensus         6 ~~~i~~G~t~~~y~~---~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         6 WTQTGEGGNGESYTH---KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             heeecCCCCcceeEe---cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            357899999999984   24456678776533  23446789988888764443  55666666677778999999886 


Q ss_pred             CHHHHHh
Q 011025          473 SLDVHLF  479 (495)
Q Consensus       473 sL~~~L~  479 (495)
                      .+...+.
T Consensus        81 ~~~~~~~   87 (226)
T TIGR02172        81 SFSRIIS   87 (226)
T ss_pred             chhhhhc
Confidence            3444443

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=85.69  E-value=0.11  Score=58.74  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=67.9

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCC-hhhHHHHHHHHHH--HHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS-GQGLQEFKNEVNL--IAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++...+.||+++|=+|.+++-+.|. |.||++-+.. .-..+.|.++++-  ...++|||.+++.-+-....-.|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            4566788999999999999976666 8999986554 3344555544433  4456899999987655445555888888


Q ss_pred             CCCCCHHHHHhcCC-CCHHHHHHHHH
Q 011025          469 MPNKSLDVHLFGLS-LSLSIKCYLLY  493 (495)
Q Consensus       469 ~~~GsL~~~L~~~~-~~~~~~~~l~~  493 (495)
                      + .-+|.|.|..+. .....+.|+++
T Consensus       103 v-khnLyDRlSTRPFL~~iEKkWiaF  127 (1431)
T KOG1240|consen  103 V-KHNLYDRLSTRPFLVLIEKKWIAF  127 (1431)
T ss_pred             H-hhhhhhhhccchHHHHHHHHHHHH
Confidence            7 457888877654 22334444443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=85.28  E-value=0.26  Score=53.72  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcc----c-CChhh-HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLS----R-TSGQG-LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~----~-~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ...+++|.|.+|.|+.... ...+..+.|...    . .+... ...+..|..+-..++|+|++..+-.........-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3567899999997766552 222222233221    1 11111 222667777788899999987766665555555559


Q ss_pred             ecCCCCCHHHHHhcC--CCCHHHHHHHHHhC
Q 011025          467 EYMPNKSLDVHLFGL--SLSLSIKCYLLYIL  495 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~--~~~~~~~~~l~~~L  495 (495)
                      ||+++ +|..++...  -...+..+.+.|++
T Consensus       401 E~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~  430 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGKLTPLEADCFFKQLL  430 (601)
T ss_pred             hcccH-HHHHHHhcccccchhhhhHHHHHHH
Confidence            99999 999999874  45555666666653

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=84.82  E-value=1  Score=39.21  Aligned_cols=11  Identities=18%  Similarity=0.247  Sum_probs=5.0

Q ss_pred             ceEEEEeehhh
Q 011025          307 AISIAIGTTLS  317 (495)
Q Consensus       307 ~i~Iii~v~v~  317 (495)
                      .++|.+++.++
T Consensus        49 nIVIGvVVGVG   59 (154)
T PF04478_consen   49 NIVIGVVVGVG   59 (154)
T ss_pred             cEEEEEEeccc
Confidence            34444444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=84.15  E-value=0.32  Score=50.64  Aligned_cols=73  Identities=26%  Similarity=0.428  Sum_probs=57.1

Q ss_pred             HHHhcCCcccccccccCCceeEEeeeecC-CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          386 ALEATNHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       386 l~~~t~~~~~~~~LG~G~fG~Vykg~~~~-g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      +....++|.....+|.|+||.|+.+.... +-..|||+|... ........++|...++++.|++++++...+..
T Consensus        44 ~sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   44 TSREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            34455678889999999999999998544 447899999743 34445678899999999999999998766554

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=82.87  E-value=0.47  Score=46.87  Aligned_cols=54  Identities=28%  Similarity=0.349  Sum_probs=41.1

Q ss_pred             HcCCCCCccceEEEEEeC-----CEEEEEEecCCCCCHHHHHhcCC------CCHHHHHHHHHhC
Q 011025          442 AKLQHKNLVRLLGCCLEG-----QELLLIYEYMPNKSLDVHLFGLS------LSLSIKCYLLYIL  495 (495)
Q Consensus       442 ~~l~H~niv~l~g~~~~~-----~~~~lv~Ey~~~GsL~~~L~~~~------~~~~~~~~l~~~L  495 (495)
                      -.+-|.|||+++.+....     .+..++.|||..|+|..||+.-+      ....|+.|+-+||
T Consensus       122 lqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIl  186 (458)
T KOG1266|consen  122 LQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQIL  186 (458)
T ss_pred             HHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            345699999998887542     34689999999999999997533      3344888888775

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=82.50  E-value=3.2  Score=37.97  Aligned_cols=85  Identities=16%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEE-cccCC-------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKR-LSRTS-------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~-l~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ....|-+|+-+.|+++.+ .|+...||. +.+.-       .-.....++|++++.+++--.|.-..=+..+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            346788999999999998 566655654 33221       112456789999999986555544433444455557899


Q ss_pred             ecCCC-CCHHHHHhc
Q 011025          467 EYMPN-KSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~-GsL~~~L~~  480 (495)
                      ||+++ .++.+|+..
T Consensus        90 E~~~g~~~vk~~i~~  104 (229)
T KOG3087|consen   90 EFIDGASTVKDFILS  104 (229)
T ss_pred             EeccchhHHHHHHHH
Confidence            99976 478888864

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=82.17  E-value=3.1  Score=38.67  Aligned_cols=77  Identities=22%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             cccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCC--CccceEEEEEe---CCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHK--NLVRLLGCCLE---GQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~~---~~~~~lv~Ey~~~  471 (495)
                      +.|+.|..+.||+....+ +.+++|.....  .......+|..++..+...  .+.++++....   ....++++|++++
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecc
Confidence            568999999999999866 68999987643  3456777888888877533  34566664433   3457999999999


Q ss_pred             CCHHH
Q 011025          472 KSLDV  476 (495)
Q Consensus       472 GsL~~  476 (495)
                      ..+..
T Consensus        80 ~~~~~   84 (239)
T PF01636_consen   80 RPLDD   84 (239)
T ss_dssp             EEHHH
T ss_pred             ccccc
Confidence            98887

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=81.28  E-value=7.5  Score=36.87  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             cccCCc-eeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecCCCCCHHH
Q 011025          399 LGQGGF-GPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       399 LG~G~f-G~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~  476 (495)
                      |-.|.. ..||+...+ +..+.||+.....   ..+..+|+.++..+. +--+.++++.....+..++|||++++.+|..
T Consensus         6 ~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~   81 (244)
T cd05150           6 VTEGQSGATVYRLDGK-NPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAA   81 (244)
T ss_pred             cCCCCCcCeEEEEcCC-CCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhH
Confidence            344444 678988764 4678888886543   335677888887773 3334466666655556799999999988875


Q ss_pred             H
Q 011025          477 H  477 (495)
Q Consensus       477 ~  477 (495)
                      .
T Consensus        82 ~   82 (244)
T cd05150          82 L   82 (244)
T ss_pred             h
Confidence            4

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=80.47  E-value=4.6  Score=39.22  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCCh----------------------hhHHHHHHHHHHHHcCCCC--Cc
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG----------------------QGLQEFKNEVNLIAKLQHK--NL  449 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~----------------------~~~~~f~~E~~~l~~l~H~--ni  449 (495)
                      ..+++||.|.-+.||.|..+.|.+++||.=+....                      .....-.+|...|.+|...  .+
T Consensus        94 ~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~V  173 (304)
T COG0478          94 AIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKV  173 (304)
T ss_pred             hhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCC
Confidence            44689999999999999998999999996542100                      0122456888899888644  44


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCCHHH
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~GsL~~  476 (495)
                      -+.++    .+.-.+||||+++-.|..
T Consensus       174 P~P~~----~nRHaVvMe~ieG~eL~~  196 (304)
T COG0478         174 PKPIA----WNRHAVVMEYIEGVELYR  196 (304)
T ss_pred             CCccc----cccceeeeehcccceeec
Confidence            44443    234589999998866554

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=80.44  E-value=5.8  Score=36.69  Aligned_cols=74  Identities=11%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             cccccCCceeEEeeeecC-------CcEEEEEEcccCC------------h----------hhHHHH----HHHHHHHHc
Q 011025          397 NKLGQGGFGPVYKGTLAD-------GKAIAVKRLSRTS------------G----------QGLQEF----KNEVNLIAK  443 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~~-------g~~VaVK~l~~~~------------~----------~~~~~f----~~E~~~l~~  443 (495)
                      -.||.|.-+.||.|.-.+       +..+|||+.+...            .          .....+    .+|...|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999998542       4799999875211            0          001122    388988888


Q ss_pred             CCC--CCccceEEEEEeCCEEEEEEecCCCCCH
Q 011025          444 LQH--KNLVRLLGCCLEGQELLLIYEYMPNKSL  474 (495)
Q Consensus       444 l~H--~niv~l~g~~~~~~~~~lv~Ey~~~GsL  474 (495)
                      +..  -++-.++++    ..-+|||||+.++++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~  111 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQV  111 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCc
Confidence            853  455555543    456899999976544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-13
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-13
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-10
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		2e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		7e-08
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		7e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		8e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		8e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		8e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		1e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		4e-04
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		4e-04
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-04
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		5e-04
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		5e-04
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		5e-04
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		5e-04
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		5e-04
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		5e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		5e-04
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		5e-04
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		5e-04
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		5e-04
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		6e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		6e-04
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		6e-04
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		6e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		7e-04
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		7e-04
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		7e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQ-EFKNEVN 439
           F LR    A+++FS++N LG+GGFG VYKG LADG  +AVKRL     QG + +F+ EV 
Sbjct: 28  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 440 LIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
           +I+   H+NL+R             +Y YM N S+
Sbjct: 88  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 122

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRL--SRTSGQGLQEFKNEV 438
           F LR    A+++F ++N LG+GGFG VYKG LADG  +AVKRL   RT G  LQ F+ EV
Sbjct: 20  FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ-FQTEV 78
Query: 439 NLIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
            +I+   H+NL+R             +Y YM N S+
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 114

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 374 ESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQE 433
           ES   PL  L    EATN+F  +  +G G FG VYKG L DG  +A+KR +  S QG++E
Sbjct: 25  ESYRVPLVDLE---EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEE 81
Query: 434 FKNEVNLIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLFGLSL 483
           F+ E+  ++  +H +LV              IY+YM N +L  HL+G  L
Sbjct: 82  FETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDL 131

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 374 ESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQE 433
           ES   PL  L    EATN+F  +  +G G FG VYKG L DG  +A+KR +  S QG++E
Sbjct: 25  ESYRVPLVDLE---EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEE 81
Query: 434 FKNEVNLIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSLDVHLFGLSL 483
           F+ E+  ++  +H +LV              IY+YM N +L  HL+G  L
Sbjct: 82  FETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDL 131

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 390 TNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLSR----TSGQGLQEFKNEVN 439
           TN+F +       NK+G+GGFG VYKG + +   +AVK+L+     T+ +  Q+F  E+ 
Sbjct: 24  TNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIK 82
Query: 440 LIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
           ++AK QH+NLV              +Y YMPN SL
Sbjct: 83  VMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 390 TNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLSR----TSGQGLQEFKNEVN 439
           TN+F +       NK+G+GGFG VYKG + +   +AVK+L+     T+ +  Q+F  E+ 
Sbjct: 18  TNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIK 76
Query: 440 LIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
           ++AK QH+NLV              +Y YMPN SL
Sbjct: 77  VMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 111

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 390 TNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLSR----TSGQGLQEFKNEVN 439
           TN+F +       NK+G+GGFG VYKG + +   +AVK+L+     T+ +  Q+F  E+ 
Sbjct: 24  TNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIK 82
Query: 440 LIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
           ++AK QH+NLV              +Y YMPN SL
Sbjct: 83  VMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSL 117

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 390 TNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLSR----TSGQGLQEFKNEVN 439
           TN+F +       NK G+GGFG VYKG + +   +AVK+L+     T+ +  Q+F  E+ 
Sbjct: 15  TNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIK 73
Query: 440 LIAKLQHKNLVRXXXXXXXXXXXXXIYEYMPNKSL 474
           + AK QH+NLV              +Y Y PN SL
Sbjct: 74  VXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSL 108

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQG----- 430
           EFP    RL   A N    E ++G+GGFG V+KG L  D   +A+K L     +G     
Sbjct: 7   EFPKS--RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMI 64
Query: 431 --LQEFKNEVNLIAKLQHKNLVR 451
              QEF+ EV +++ L H N+V+
Sbjct: 65  EKFQEFQREVFIMSNLNHPNIVK 87

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQG----- 430
           EFP    RL   A N    E ++G+GGFG V+KG L  D   +A+K L     +G     
Sbjct: 7   EFPKS--RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMI 64
Query: 431 --LQEFKNEVNLIAKLQHKNLVR 451
              QEF+ EV +++ L H N+V+
Sbjct: 65  EKFQEFQREVFIMSNLNHPNIVK 87

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 377 EFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQG----- 430
           EFP    RL   A N    E ++G+GGFG V+KG L  D   +A+K L     +G     
Sbjct: 7   EFPKS--RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMI 64
Query: 431 --LQEFKNEVNLIAKLQHKNLVR 451
              QEF+ EV +++ L H N+V+
Sbjct: 65  EKFQEFQREVFIMSNLNHPNIVK 87

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRXXXXX 456
            +LG G FG V+ G   +   +AVK L +     +Q F  E NL+  LQH  LVR     
Sbjct: 19  KRLGAGQFGEVWMGYYNNSTKVAVKTL-KPGTMSVQAFLEEANLMKTLQHDKLVRLYAVV 77
Query: 457 XXXXXXXXIYEYMPNKSL 474
                   I EYM   SL
Sbjct: 78  TREEPIYIITEYMAKGSL 95

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRXXXXX 456
            KLG G FG V+ G   +   +AVK L +     +Q F  E NL+  LQH  LVR     
Sbjct: 18  KKLGAGQFGEVWMGYYNNSTKVAVKTL-KPGTMSVQAFLEEANLMKTLQHDKLVRLYAVV 76
Query: 457 XXXXXXXXIYEYMPNKSL 474
                   I E+M   SL
Sbjct: 77  TKEEPIYIITEFMAKGSL 94

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 16  QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 69

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 14  QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 14  QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 14  QRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 20  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 20  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 35  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 87

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 42  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 94

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 19  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 71

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 43  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 43  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 31  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 398 KLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 31  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 20  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 79
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 80  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 107

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 21  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 80
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 81  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 108

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 17  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 76
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 77  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 104

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 16  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 75
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 76  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 103

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 17  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 76
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 77  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 104

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 48  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 107
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 108 KGVCYSAGRRNLKLIMEYLPYGSLRDYL 135

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 15  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 74
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 75  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 102

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 24  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 83
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 84  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 111

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 18  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 77
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 78  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 105

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 17  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 76
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 77  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 104

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 22  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 81
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 82  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 109

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 23  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 82
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 83  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 110

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 20  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 79
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 80  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 107

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 398 KLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           +LG+G FG V+           D   +AVK L   S    Q+F+ E  L+  LQH+++VR
Sbjct: 25  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 84
Query: 452 XXXXXXXXXXXXXIYEYMPNKSLD 475
                        ++EYM +  L+
Sbjct: 85  FFGVCTEGRPLLMVFEYMRHGDLN 108

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 35  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 94
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 95  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 122

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 398 KLGQGGFGPVYK---GTLAD--GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRX 452
           +LG+G FG V       L D  G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V+ 
Sbjct: 35  QLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY 94
Query: 453 XXX--XXXXXXXXXIYEYMPNKSLDVHL 478
                         I EY+P  SL  +L
Sbjct: 95  KGVCYSAGRRNLKLIMEYLPYGSLRDYL 122

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 398 KLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           +LG+G FG V+           D   +AVK L   S    Q+F+ E  L+  LQH+++VR
Sbjct: 19  ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 78
Query: 452 XXXXXXXXXXXXXIYEYMPNKSLD 475
                        ++EYM +  L+
Sbjct: 79  FFGVCTEGRPLLMVFEYMRHGDLN 102

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLS-RTSGQGLQEFK-NEVNLIAKLQHKNLVRXXX 454
            K+G+G +G VYK   + G+ +A+KR+      +G+      E++L+ +L H N+V    
Sbjct: 27  EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLID 86
Query: 455 XXXXXXXXXXIYEYMP---NKSLDVHLFGLSLSLSIKCYLLYIL 495
                     ++E+M     K LD +  GL  S  IK YL  +L
Sbjct: 87  VIHSERCLTLVFEFMEKDLKKVLDENKTGLQDS-QIKIYLYQLL 129

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLS-RTSGQGLQEFK-NEVNLIAKLQHKNLVRXXX 454
            K+G+G +G VYK   + G+ +A+KR+      +G+      E++L+ +L H N+V    
Sbjct: 27  EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLID 86
Query: 455 XXXXXXXXXXIYEYMP---NKSLDVHLFGLSLSLSIKCYLLYIL 495
                     ++E+M     K LD +  GL  S  IK YL  +L
Sbjct: 87  VIHSERCLTLVFEFMEKDLKKVLDENKTGLQDS-QIKIYLYQLL 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-51
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-51
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-50
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-28
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-24
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-20
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-20
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-19
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-19
4aoj_A	329	High affinity nerve growth factor receptor; transf	5e-19
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-19
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-18
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-18
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-18
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-18
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-18
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-18
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-18
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-17
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-17
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-17
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-17
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	1e-17
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-17
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	3e-17
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	1e-09
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-17
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-17
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-17
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-17
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-17
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	5e-17
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-17
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-17
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-17
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-17
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-16
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-16
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-16
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-16
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-16
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-16
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-16
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-16
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-16
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-16
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-16
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-16
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-16
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-16
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	6e-16
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	6e-16
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-16
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-15
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-15
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-15
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	4e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-15
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	9e-15
3q4u_A	301	Activin receptor type-1; structural genomics conso	9e-15
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-14
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-14
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-14
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-14
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-13
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	7e-12
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	9e-12
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-11
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	9e-11
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-10
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-10
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-10
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-10
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-10
3o0g_A	292	Cell division protein kinase 5; kinase activator c	6e-10
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-09
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	8e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	8e-09
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-09
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	8e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-08
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-08
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-08
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-08
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-08
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-08
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-08
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	5e-08
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	7e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-07
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-07
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-07
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	7e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	8e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	8e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-04
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	4e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	5e-04
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	6e-04
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	6e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	6e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	8e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  177 bits (450), Expect = 1e-51
 Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQ-EFKNEVN 439
           F LR    A+++FS++N LG+GGFG VYKG LADG  +AVKRL     QG + +F+ EV 
Sbjct: 20  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVE 79

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           +I+   H+NL+RL G C+   E LL+Y YM N S+   L  
Sbjct: 80  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE 120

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  175 bits (446), Expect = 5e-51
 Identities = 45/100 (45%), Positives = 65/100 (65%)

Query: 381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNL 440
            PL    EATN+F  +  +G G FG VYKG L DG  +A+KR +  S QG++EF+ E+  
Sbjct: 29  VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIET 88

Query: 441 IAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           ++  +H +LV L+G C E  E++LIY+YM N +L  HL+G
Sbjct: 89  LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  172 bits (439), Expect = 4e-50
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 11/121 (9%)

Query: 372 QAESQEFPLFPLRLALEATNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLS- 424
           +     F  F        TN+F +       NK+G+GGFG VYKG + +   +AVK+L+ 
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64

Query: 425 ---RTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGL 481
               T+ +  Q+F  E+ ++AK QH+NLV LLG   +G +L L+Y YMPN SL   L  L
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL 124

Query: 482 S 482
            
Sbjct: 125 D 125

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  114 bits (288), Expect = 1e-28
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNL 440
                    +          +G FG V+K  L   + +AVK       Q   + + EV  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQS-WQNEYEVYS 71

Query: 441 IAKLQHKNLVRLLGCCLEG----QELLLIYEYMPNKSLDVHLFGLSLSLSIKC 489
           +  ++H+N+++ +G    G     +L LI  +    SL   L    +S +  C
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELC 124

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  103 bits (259), Expect = 1e-24
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             ++      +G+G +G VYKG+L D + +AVK  S  + Q     K  +  +  ++H N
Sbjct: 11  DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEK-NIYRVPLMEHDN 68

Query: 449 LVRLLGCCLEG-----QELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY 493
           + R +            E LL+ EY PN SL  +L   +      C L +
Sbjct: 69  IARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAH 118

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
              LG+G FG   K T    G+ + +K L R   +  + F  EV ++  L+H N+++ +G
Sbjct: 15  GEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIG 74

Query: 455 CCLEGQELLLIYEYMPNKSLDVHL 478
              + + L  I EY+   +L   +
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGII 98

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
           + K+G G FG V++     G  +AVK L       + + EF  EV ++ +L+H N+V  +
Sbjct: 42  KEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFM 100

Query: 454 GCCLEGQELLLIYEYMPNKSLDVHL 478
           G   +   L ++ EY+   SL   L
Sbjct: 101 GAVTQPPNLSIVTEYLSRGSLYRLL 125

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRL----SRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           E  +G GGFG VY+     G  +AVK           Q ++  + E  L A L+H N++ 
Sbjct: 12  EEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIA 70

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSL 485
           L G CL+   L L+ E+     L+  L G  +  
Sbjct: 71  LRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPP 104

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           + +LG+G FG V+     +         +AVK L   +    ++F+ E  L+  LQH+++
Sbjct: 20  KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHI 79

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           V+  G C +G  L++++EYM +  L+  L
Sbjct: 80  VKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           + +LG+G FG V+     +         +AVK L   S    Q+F+ E  L+  LQH+++
Sbjct: 46  KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHI 105

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           VR  G C EG+ LL+++EYM +  L+  L
Sbjct: 106 VRFFGVCTEGRPLLMVFEYMRHGDLNRFL 134

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 85.7 bits (213), Expect = 6e-19
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKN 448
              +   KL +   G ++KG    G  I VK L     S +  ++F  E   +    H N
Sbjct: 10  KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68

Query: 449 LVRLLGCCLE--GQELLLIYEYMPNKSL 474
           ++ +LG C         LI  +MP  SL
Sbjct: 69  VLPVLGACQSPPAPHPTLITHWMPYGSL 96

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKN 448
              LG+G FG V K T    K       +AVK L    S   L++  +E N++ ++ H +
Sbjct: 28  GKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH 87

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSL 474
           +++L G C +   LLLI EY    SL
Sbjct: 88  VIKLYGACSQDGPLLLIVEYAKYGSL 113

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKN 448
             +LG+  FG VYKG L          A+A+K L  +  G   +EF++E  L A+LQH N
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPN 73

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +V LLG   + Q L +I+ Y  +  L   L
Sbjct: 74  VVCLLGVVTKDQPLSMIFSYCSHGDLHEFL 103

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-------LQEFKNEVNLIA 442
           N    E ++G+GGFG V+KG  + D   +A+K L     +G        QEF+ EV +++
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIK 488
            L H N+V+L G         ++ E++P   L   L   +  +   
Sbjct: 79  NLNHPNIVKLYGLMH--NPPRMVMEFVPCGDLYHRLLDKAHPIKWS 122

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 25/171 (14%)

Query: 326 SFLWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRL 385
           S+  +           +        L+++G + +       +  K +  +      P   
Sbjct: 2   SYYHHHHHHDYDIPTTEN-------LYFQGAMGSELQSPEYKLSKLRTSTIMTDYNPNYC 54

Query: 386 ALEATNHFSDE-----------NKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTS 427
               T+  SD              LG G FG VY+G ++          +AVK L    S
Sbjct: 55  FAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS 114

Query: 428 GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            Q   +F  E  +I+K  H+N+VR +G  L+     ++ E M    L   L
Sbjct: 115 EQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFL 165

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 396 ENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHK 447
              LGQG F  ++KG               + +K L +      + F    ++++KL HK
Sbjct: 13  NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHK 72

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +LV   G C+ G E +L+ E++   SLD +L
Sbjct: 73  HLVLNYGVCVCGDENILVQEFVKFGSLDTYL 103

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 84.3 bits (209), Expect = 5e-18
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKN 448
              +G+G FG V++              +AVK L    S     +F+ E  L+A+  + N
Sbjct: 52  VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPN 111

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +V+LLG C  G+ + L++EYM    L+  L
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDLNEFL 141

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 357 IRNHYAYNILRGGKQQAESQEFPLFPL-RLALEATNHFSDENKLGQGGFGPVYKGTLADG 415
           ++ H+       GK   +   +P+     +  +        + +G+G FG V K  +   
Sbjct: 1   MKKHH---HHHHGKNNPDPTIYPVLDWNDIKFQ--------DVIGEGNFGQVLKARIKKD 49

Query: 416 KA---IAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMP 470
                 A+KR+    S    ++F  E+ ++ KL  H N++ LLG C     L L  EY P
Sbjct: 50  GLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAP 109

Query: 471 NKSLDVHL 478
           + +L   L
Sbjct: 110 HGNLLDFL 117

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++  +G 
Sbjct: 29  GQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88

Query: 456 CLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIK 488
               Q L ++ ++    SL  HL        +K
Sbjct: 89  STAPQ-LAIVTQWCEGSSLYHHLHASETKFEMK 120

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 397 NKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
            +LGQG FG VY+G             +A+K +    S +   EF NE +++ +    ++
Sbjct: 31  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 90

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           VRLLG   +GQ  L+I E M    L  +L
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTRGDLKSYL 119

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             +LG G FG V  G       +A+K + +       EF  E  ++  L H+ LV+L G 
Sbjct: 29  LKELGTGQFGVVKYGKWRGQYDVAIKMI-KEGSMSEDEFIEEAKVMMNLSHEKLVQLYGV 87

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
           C + + + +I EYM N  L  +L
Sbjct: 88  CTKQRPIFIITEYMANGCLLNYL 110

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK------AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKN 448
              LG G FG VY+G ++          +AVK L    S Q   +F  E  +I+K  H+N
Sbjct: 35  IRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN 94

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +VR +G  L+     ++ E M    L   L
Sbjct: 95  IVRCIGVSLQSLPRFILMELMAGGDLKSFL 124

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             ++G G FG V+ G   +   +A+K + R      ++F  E  ++ KL H  LV+L G 
Sbjct: 13  VQEIGSGQFGLVHLGYWLNKDKVAIKTI-REGAMSEEDFIEEAEVMMKLSHPKLVQLYGV 71

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
           CLE   + L+ E+M +  L  +L
Sbjct: 72  CLEQAPICLVTEFMEHGCLSDYL 94

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGT---LADGKAI--AVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
             +LG+G FG V       L D      AVK+L  ++ + L++F+ E+ ++  LQH N+V
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74

Query: 451 RLLGCCLEGQE--LLLIYEYMPNKSLDVHL 478
           +  G C       L LI EY+P  SL  +L
Sbjct: 75  KYKGVCYSAGRRNLKLIMEYLPYGSLRDYL 104

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             +LG G FG V  G       +AVK + +       EF  E   + KL H  LV+  G 
Sbjct: 13  LKELGSGQFGVVKLGKWKGQYDVAVKMI-KEGSMSEDEFFQEAQTMMKLSHPKLVKFYGV 71

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
           C +   + ++ EY+ N  L  +L
Sbjct: 72  CSKEYPIYIVTEYISNGCLLNYL 94

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
             +LG+G FG V            G+ +AVK+L  ++ + L++F+ E+ ++  LQH N+V
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 105

Query: 451 RLLGCCLEGQE--LLLIYEYMPNKSLDVHL 478
           +  G C       L LI EY+P  SL  +L
Sbjct: 106 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYL 135

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 27/155 (17%)

Query: 328 LWYRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLAL 387
           + Y+ ++  + Q   +  +  +         N Y + I        E  EFP   L+   
Sbjct: 2   VDYKYKQKPKYQVRWKIIESYE--------GNSYTF-IDPTQLPYNEKWEFPRNNLQF-- 50

Query: 388 EATNHFSDENKLGQGGFGPVYKGTLAD------GKAIAVKRL-SRTSGQGLQEFKNEVNL 440
                      LG G FG V + T            +AVK L S       +   +E+ +
Sbjct: 51  --------GKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102

Query: 441 IAKL-QHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           ++ L QH+N+V LLG C  G  +L+I EY     L
Sbjct: 103 MSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 137

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK-----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
              LG G FG VYKG            +A+K L   TS +  +E  +E  ++A + + ++
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            RLLG CL    + LI + MP   L  ++
Sbjct: 80  CRLLGICLT-STVQLITQLMPFGCLLDYV 107

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 396 ENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
            ++LG+G FG V            G  +AVK+L  +     ++F+ E+ ++  L    +V
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIV 87

Query: 451 RLLGCCLEGQE--LLLIYEYMPNKSLDVHL 478
           +  G         L L+ EY+P+  L   L
Sbjct: 88  KYRGVSYGPGRQSLRLVMEYLPSGCLRDFL 117

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
             ++G+G FG V+ G L AD   +AVK            +F  E  ++ +  H N+VRL+
Sbjct: 119 GEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLI 178

Query: 454 GCCLEGQELLLIYEYMPNKSLDVHL 478
           G C + Q + ++ E +        L
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFL 203

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKNLVRLL 453
              +G+G FG VY G    G+ +A++ +   R +   L+ FK EV    + +H+N+V  +
Sbjct: 38  GELIGKGRFGQVYHGRW-HGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM 95

Query: 454 GCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIK 488
           G C+    L +I      ++L   +    + L + 
Sbjct: 96  GACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVN 130

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
                E  +G+G FG V K      K +A+K++   S    + F  E+  ++++ H N+V
Sbjct: 8   KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIV 64

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +L G CL    + L+ EY    SL   L
Sbjct: 65  KLYGACL--NPVCLVMEYAEGGSLYNVL 90

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 80.4 bits (199), Expect = 7e-17
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA------IAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHK 447
              LG G FG V + T            +AVK L         +   +E+ +++ L  H 
Sbjct: 28  GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 87

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSL 474
           N+V LLG C  G   L+I EY     L
Sbjct: 88  NIVNLLGACTIGGPTLVITEYCCYGDL 114

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 396 ENKLGQGGFGPVYKGTLADGK--------AIAVKRL-SRTSGQGLQEFKNEVNLIAKL-Q 445
              LG+G FG V                  +AVK L    + + L +  +E+ ++  + +
Sbjct: 40  GKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 99

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           HKN++ LLG C +   L +I EY    +L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNL 128

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 80.1 bits (198), Expect = 9e-17
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK-----AIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNL 449
              LG G FG V+KG            + +K +   SG Q  Q   + +  I  L H ++
Sbjct: 18  LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHI 77

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           VRLLG C     L L+ +Y+P  SL  H+
Sbjct: 78  VRLLGLCPG-SSLQLVTQYLPLGSLLDHV 105

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 396 ENKLGQGGFGPVYKGTL---ADGKAI--AVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNL 449
              LG+G FG V         DG     AVK L   +G Q    +K E++++  L H+++
Sbjct: 36  IRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHI 95

Query: 450 VRLLGCCLE--GQELLLIYEYMPNKSLDVHL 478
           ++  GCC +     L L+ EY+P  SL  +L
Sbjct: 96  IKYKGCCEDAGAASLQLVMEYVPLGSLRDYL 126

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 396 ENKLGQGGFGPVYKGTLA-----DGKAIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
              LG+G FG V            G+ +AVK L   + G  + + K E+ ++  L H+N+
Sbjct: 26  IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENI 85

Query: 450 VRLLGCCLE--GQELLLIYEYMPNKSLDVHL 478
           V+  G C E  G  + LI E++P+ SL  +L
Sbjct: 86  VKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 116

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 396 ENKLGQGGFGPVYKGTLADGK--------AIAVKRL-SRTSGQGLQEFKNEVNLIAKL-Q 445
              LG+G FG V                  +AVK L    + + L +  +E+ ++  + +
Sbjct: 86  GKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK 145

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           HKN++ LLG C +   L +I EY    +L
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNL 174

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA------IAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHK 447
              LG G FG V   T            +AVK L  +      +   +E+ ++ +L  H+
Sbjct: 50  GKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHE 109

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSL 474
           N+V LLG C     + LI+EY     L
Sbjct: 110 NIVNLLGACTLSGPIYLIFEYCCYGDL 136

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 396 ENKLGQGGFGPVYKGTLADGK--------AIAVKRL-SRTSGQGLQEFKNEVNLIAKL-Q 445
              LG+G FG V                  +AVK L S  + + L +  +E+ ++  + +
Sbjct: 74  GKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGK 133

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           HKN++ LLG C +   L +I EY    +L
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNL 162

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA-----IAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
           +  +G G FG VYKG L          +A+K L +  + +   +F  E  ++ +  H N+
Sbjct: 49  QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI 108

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +RL G   + + +++I EYM N +LD  L
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFL 137

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLV 450
           +  +G+G FG VY G   D        A+K LSR T  Q ++ F  E  L+  L H N++
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85

Query: 451 RLLGCCLEGQE-LLLIYEYMPNKSLDVHL 478
            L+G  L  +    ++  YM +  L   +
Sbjct: 86  ALIGIMLPPEGLPHVLLPYMCHGDLLQFI 114

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGK-AIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           ++KLG G +G VY+G        +AVK L +     ++EF  E  ++ +++H NLV+LLG
Sbjct: 18  KHKLGGGQYGEVYEGVWKKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLVQLLG 76

Query: 455 CCLEGQELLLIYEYMPNKSLDVHL 478
            C       +I E+M   +L  +L
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYL 100

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           E  +G G  G V  G L         +A+K L +  + +  ++F +E +++ +  H N++
Sbjct: 54  EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNII 113

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           RL G    G+  +++ EYM N SLD  L
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFL 141

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLV 450
              +G+G FG VY GTL D        AVK L+R T    + +F  E  ++    H N++
Sbjct: 30  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89

Query: 451 RLLGCCLEGQE-LLLIYEYMPNKSLDVHL 478
            LLG CL  +   L++  YM +  L   +
Sbjct: 90  SLLGICLRSEGSPLVVLPYMKHGDLRNFI 118

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           ++KLG G +G VY+G        +AVK L   + + ++EF  E  ++ +++H NLV+LLG
Sbjct: 225 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNLVQLLG 283

Query: 455 CCLEGQELLLIYEYMPNKSLDVHL 478
            C       +I E+M   +L  +L
Sbjct: 284 VCTREPPFYIITEFMTYGNLLDYL 307

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           +  +G G FG V  G L        ++A+K L    + +  ++F  E +++ +  H N++
Sbjct: 50  DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 109

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           RL G   + + ++++ EYM N SLD  L
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFL 137

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 396 ENKLGQGGFGPVYKGTLADGK-----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNL 449
              LG G FG VYKG            +A+K L   TS +  +E  +E  ++A + + ++
Sbjct: 20  IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            RLLG CL    + LI + MP   L  ++
Sbjct: 80  CRLLGICLT-STVQLITQLMPFGCLLDYV 107

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 396 ENKLGQGGFGPVYKGTL--ADGKAI--AVKRL---SRTSGQGLQEFKNEVNLIAKLQHKN 448
             KLG G FG V +G      GK +  AVK L     +  + + +F  EVN +  L H+N
Sbjct: 23  LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN 82

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           L+RL G  L    + ++ E  P  SL   L
Sbjct: 83  LIRLYGVVLT-PPMKMVTELAPLGSLLDRL 111

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
              +G+G FG V  G    G  +AVK +   +    Q F  E +++ +L+H NLV+LLG 
Sbjct: 26  LQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGV 82

Query: 456 CLEGQE-LLLIYEYMPNKSLDVHL 478
            +E +  L ++ EYM   SL  +L
Sbjct: 83  IVEEKGGLYIVTEYMAKGSLVDYL 106

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 77.3 bits (191), Expect = 5e-16
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
             +LG G FG V+ G       +AVK L +        F  E NL+ +LQH+ LVRL   
Sbjct: 18  VERLGAGQFGEVWMGYYNGHTKVAVKSL-KQGSMSPDAFLAEANLMKQLQHQRLVRLYAV 76

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
             + + + +I EYM N SL   L
Sbjct: 77  VTQ-EPIYIITEYMENGSLVDFL 98

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 397 NKLGQGGFGPVYKGTLAD------GKAIAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHKN 448
             LG+G FG V +            + +AVK L    +    +   +E+ ++  +  H N
Sbjct: 33  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 92

Query: 449 LVRLLGCCL-EGQELLLIYEYMPNKSL 474
           +V LLG C   G  L++I E+    +L
Sbjct: 93  VVNLLGACTKPGGPLMVIVEFCKFGNL 119

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 78.9 bits (195), Expect = 6e-16
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
              +G+G FG V  G    G  +AVK +   +    Q F  E +++ +L+H NLV+LLG 
Sbjct: 198 LQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGV 254

Query: 456 CLEGQELL-LIYEYMPNKSLDVHL 478
            +E +  L ++ EYM   SL  +L
Sbjct: 255 IVEEKGGLYIVTEYMAKGSLVDYL 278

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 78.3 bits (193), Expect = 6e-16
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLV 450
              +G+G FG VY GTL D        AVK L+R T    + +F  E  ++    H N++
Sbjct: 94  NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 153

Query: 451 RLLGCCLEGQE-LLLIYEYMPNKSLDVHL 478
            LLG CL  +   L++  YM +  L   +
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDLRNFI 182

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKNL 449
              LG+G FG V +  L         +AVK L     +   ++EF  E   + +  H ++
Sbjct: 28  GRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV 87

Query: 450 VRLLGCCLEGQ------ELLLIYEYMPNKSLDVHL 478
            +L+G  L  +        ++I  +M +  L   L
Sbjct: 88  AKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFL 122

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRLSR--TSGQGLQEFKNEVNLIAKLQHKNL 449
              LG+G FG V +G L         +AVK +    +S + ++EF +E   +    H N+
Sbjct: 39  GKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV 98

Query: 450 VRLLGCCLEGQ-----ELLLIYEYMPNKSLDVHL 478
           +RLLG C+E       + ++I  +M    L  +L
Sbjct: 99  IRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
              +G+G FG V++G     +    A+A+K   + TS    ++F  E   + +  H ++V
Sbjct: 20  GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 79

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +L+G   E   + +I E      L   L
Sbjct: 80  KLIGVITE-NPVWIIMELCTLGELRSFL 106

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA----IAVKRLSR-TSGQGLQEFKNEVNLIAKLQHKNLV 450
              LG+G FG VY+G   + K     +AVK   +  +    ++F +E  ++  L H ++V
Sbjct: 17  NRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIV 76

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +L+G   E +   +I E  P   L  +L
Sbjct: 77  KLIGIIEE-EPTWIIMELYPYGELGHYL 103

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL 457
           LG+G +G VY G  L++   IA+K +     +  Q    E+ L   L+HKN+V+ LG   
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 89

Query: 458 EGQELLLIYEYMPNKSL 474
           E   + +  E +P  SL
Sbjct: 90  ENGFIKIFMEQVPGGSL 106

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 396 ENKLGQGGFGPVYKGTL-ADGKAI--AVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           + +LG G FG V +G      K I  A+K L   T     +E   E  ++ +L +  +VR
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
           L+G C   + L+L+ E      L   L
Sbjct: 75  LIGVCQA-EALMLVMEMAGGGPLHKFL 100

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           E KLG G FG V+  T      +AVK + +     ++ F  E N++  LQH  LV+L   
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVKLHAV 251

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
             + + + +I E+M   SL   L
Sbjct: 252 VTK-EPIYIITEFMAKGSLLDFL 273

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 76.0 bits (187), Expect = 9e-15
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGK----AIAVKRL-SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
              +G+G FG V++G     +    A+A+K   + TS    ++F  E   + +  H ++V
Sbjct: 395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 454

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +L+G   E   + +I E      L   L
Sbjct: 455 KLIGVITE-NPVWIIMELCTLGELRSFL 481

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNE--VNLIAKLQHKNLVRLL 453
              +G+G +G V++G+   G+ +AVK  S    +  + +  E  +     L+H+N++  +
Sbjct: 13  LECVGKGRYGEVWRGSW-QGENVAVKIFSS---RDEKSWFRETELYNTVMLRHENILGFI 68

Query: 454 GCCLEGQ----ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY 493
              +  +    +L LI  Y    SL  +L   +L       ++ 
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVL 112

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGKA---IAVKRL--SRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           + +LG G FG V KG     K    +AVK L           E   E N++ +L +  +V
Sbjct: 22  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 81

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           R++G C   +  +L+ E      L+ +L
Sbjct: 82  RMIGICE-AESWMLVMEMAELGPLNKYL 108

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNE--VNLIAKLQHKNLVRLL 453
             ++G+G +G V+ G    G+ +AVK            +  E  +     ++H+N++  +
Sbjct: 42  VKQIGKGRYGEVWMGKW-RGEKVAVKVFFT---TEEASWFRETEIYQTVLMRHENILGFI 97

Query: 454 GCCLEGQ----ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY 493
              ++G     +L LI +Y  N SL  +L   +L       L Y
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAY 141

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 384 RLALEATNHFSDENKLGQGGFGPVYKGTLADGKA---IAVKRL-SRTSGQGLQEFKNEVN 439
           +L L+  N    + +LG G FG V +G     K    +A+K L   T     +E   E  
Sbjct: 329 KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 388

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           ++ +L +  +VRL+G C   + L+L+ E      L   L
Sbjct: 389 IMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFL 426

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           E KLGQG FG V+ GT      +A+K L   +    + F  E  ++ KL+H+ LV+L   
Sbjct: 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-PEAFLQEAQVMKKLRHEKLVQLYAV 330

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
             E + + ++ EYM   SL   L
Sbjct: 331 VSE-EPIYIVTEYMSKGSLLDFL 352

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           E KLGQG FG V+ GT      +A+K L +      + F  E  ++ KL+H+ LV+L   
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247

Query: 456 CLEGQELLLIYEYMPNKSLDVHL 478
             E + + ++ EYM   SL   L
Sbjct: 248 VSE-EPIYIVTEYMSKGSLLDFL 269

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
              +    +LG G FG VYK      G   A K +   S + L+++  E+ ++A   H  
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY 77

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLD 475
           +V+LLG      +L ++ E+ P  ++D
Sbjct: 78  IVKLLGAYYHDGKLWIMIEFCPGGAVD 104

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNE--VNLIAKLQHKNLVRLL 453
           +  +G+G FG V++G    G+ +AVK     S +  + +  E  +     L+H+N++  +
Sbjct: 47  QESIGKGRFGEVWRGKW-RGEEVAVKIF---SSREERSWFREAEIYQTVMLRHENILGFI 102

Query: 454 GCCLEGQ----ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY 493
               +      +L L+ +Y  + SL  +L   ++++     L  
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLAL 146

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
              ++   K+GQG  G VY    +A G+ +A+++++       +   NE+ ++ + ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSL 474
           +V  L   L G EL ++ EY+   SL
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSL 104

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
                K+G+G  G V        G+ +AVK +     Q  +   NEV ++   QH N+V 
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 452 LLGCCLEGQELLLIYEYMPNKSLD 475
           +    L G+EL ++ E++   +L 
Sbjct: 107 MYKSYLVGEELWVLMEFLQGGALT 130

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           ++G+G F  VYKG        +A    +  + +    Q FK E  ++  LQH N+VR   
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 455 CCLEGQE----LLLIYEYMPNKSL 474
                 +    ++L+ E M + +L
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTL 116

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           H+    KLG+GGF  V     L DG   A+KR+     Q  +E + E ++     H N++
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL 89

Query: 451 RLLGCCLE----GQELLLIYEYMPNKSL 474
           RL+  CL       E  L+  +    +L
Sbjct: 90  RLVAYCLRERGAKHEAWLLLPFFKRGTL 117

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFK-NEVNLIAKLQ 445
           E  +  + + ++G+G FG V++      G   AVK++       L+ F+  E+   A L 
Sbjct: 55  EEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVR------LEVFRVEELVACAGLS 108

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
              +V L G   EG  + +  E +   SL
Sbjct: 109 SPRIVPLYGAVREGPWVNIFMELLEGGSL 137

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS---RTSGQGLQEFKNEVNLIAKLQ 445
              FSD  ++G G FG VY    + + + +A+K++S   + S +  Q+   EV  + KL+
Sbjct: 53  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSLDV 476
           H N ++  GC L      L+ EY    + D+
Sbjct: 113 HPNTIQYRGCYLREHTAWLVMEYCLGSASDL 143

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRL---SRTSGQGLQEFKNEVNLIAKLQH 446
            +F  E K+G+G F  VY+   L DG  +A+K++        +   +   E++L+ +L H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            N+++     +E  EL ++ E      L   +
Sbjct: 92  PNVIKYYASFIEDNELNIVLELADAGDLSRMI 123

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           F    KLG+G +G VYK      G+ +A+K++       LQE   E++++ +    ++V+
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVK 88

Query: 452 LLGCCLEGQELLLIYEYMPNKSLD 475
             G   +  +L ++ EY    S+ 
Sbjct: 89  YYGSYFKNTDLWIVMEYCGAGSVS 112

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 65.0 bits (159), Expect = 9e-12
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAKLQHKNL 449
            F+   K+G+G FG V+KG      K +A+K +     +  +++ + E+ ++++     +
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 82

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSL 474
            +  G  L+  +L +I EY+   S 
Sbjct: 83  TKYYGSYLKDTKLWIIMEYLGGGSA 107

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           K+G+G FG         DG+   +K   +SR S +  +E + EV ++A ++H N+V+   
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE 90

Query: 455 CCLEGQELLLIYEYMPNKSLDVHL 478
              E   L ++ +Y     L   +
Sbjct: 91  SFEENGSLYIVMDYCEGGDLFKRI 114

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 396 ENKLGQGGFGPVYKGTL------ADGKAIAVKRL-SRTSGQGLQEFKNEVNLIAKL-QHK 447
              LG+G FG V +         A  + +AVK L    +    +   +E+ ++  +  H 
Sbjct: 27  GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 86

Query: 448 NLVRLLGCCL-EGQELLLIYEYMPNKSLDVHL 478
           N+V LLG C   G  L++I E+    +L  +L
Sbjct: 87  NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 118

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 61.9 bits (151), Expect = 9e-11
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNL--VRL 452
            ++G GG   V++      +  A+K   L     Q L  ++NE+  + KLQ  +   +RL
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 453 LGCCLEGQELLLIYEY 468
               +  Q + ++ E 
Sbjct: 94  YDYEITDQYIYMVMEC 109

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKL-Q 445
           T  F +  K+G G FG V+K     DG   A+KR           Q    EV   A L Q
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQ 69

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
           H ++VR      E   +L+  EY    SL
Sbjct: 70  HSHVVRYFSAWAEDDHMLIQNEYCNGGSL 98

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNL--VRL 452
            ++G GG   V++      +  A+K   L     Q L  ++NE+  + KLQ  +   +RL
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 453 LGCCLEGQELLLIYEY 468
               +  Q + ++ E 
Sbjct: 122 YDYEITDQYIYMVMEC 137

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKN 448
           + +  +  +G G    V         + +A+KR++    Q  + E   E+  +++  H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSL 474
           +V      +   EL L+ + +   S+
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSV 100

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKLQHKNL--VRL 452
            ++G GG   V++      +  A+K   L     Q L  ++NE+  + KLQ  +   +RL
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 453 LGCCLEGQELLLIYEY 468
               +  Q + ++ E 
Sbjct: 75  YDYEITDQYIYMVMEC 90

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 18/110 (16%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHKN 448
            K+G+G +G VYK   + G+ +A+KR+       L             E++L+ +L H N
Sbjct: 27  EKVGEGTYGVVYKAKDSQGRIVALKRIR------LDAEDEGIPSTAIREISLLKELHHPN 80

Query: 449 LVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           +V L+      + L L++E+M     K LD +  GL  S  IK YL  +L
Sbjct: 81  IVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQ-IKIYLYQLL 129

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
             F +   +G GGFG V+K     DGK   +KR+   +    ++ + EV  +AKL H N+
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNI 66

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           V   GC               ++S    LF
Sbjct: 67  VHYNGCWDGFDYDPETSSKNSSRSKTKCLF 96

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHKN 448
            K+G+G +G VYK     G+  A+K++       L++           E++++ +L+H N
Sbjct: 8   EKIGEGTYGVVYKAQNNYGETFALKKIR------LEKEDEGIPSTTIREISILKELKHSN 61

Query: 449 LVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           +V+L       + L+L++E++     K LDV   GL      K +LL +L
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVT-AKSFLLQLL 110

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
            +H+    +LG G FG V++ T  A G   A K +        +  + E+  ++ L+H  
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 449 LVRLLGCCLEGQELLLIYEYM 469
           LV L     +  E+++IYE+M
Sbjct: 216 LVNLHDAFEDDNEMVMIYEFM 236

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
            + F +   LGQG FG V K     D +  A+K++  T  + L    +EV L+A L H+ 
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEK-LSTILSEVMLLASLNHQY 63

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKS 473
           +VR     LE +  +     +  KS
Sbjct: 64  VVRYYAAWLERRNFVKPMTAVKKKS 88

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 19/111 (17%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHK 447
            K+G+G +G V+K       + +A+KR+       L +           E+ L+ +L+HK
Sbjct: 8   EKIGEGTYGTVFKAKNRETHEIVALKRVR------LDDDDEGVPSSALREICLLKELKHK 61

Query: 448 NLVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           N+VRL       ++L L++E+      K  D     L   + +K +L  +L
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEI-VKSFLFQLL 111

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 390 TNHFSDENKLGQG--GFGPVYKGT-LADGKAIAVKR--LSRTSGQGLQEFKNEVNLIAKL 444
              +     +G+G      V        G+ + V+R  L   S + +   + E+++    
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF 83

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
            H N+V      +   EL ++  +M   S 
Sbjct: 84  NHPNIVPYRATFIADNELWVVTSFMAYGSA 113

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKN 448
             F     LG+GGFG V++     D    A+KR+         ++   EV  +AKL+H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 449 LVRLLGCCLEGQE------------LLLIYEYMPNKSL 474
           +VR     LE               L +  +    ++L
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENL 102

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHK 447
           + LG+G F  VYK       + +A+K++ +   +   E K+        E+ L+ +L H 
Sbjct: 16  DFLGEGQFATVYKARDKNTNQIVAIKKI-KLGHR--SEAKDGINRTALREIKLLQELSHP 72

Query: 448 NLVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           N++ LL        + L++++M       +  +   L+ S  IK Y+L  L
Sbjct: 73  NIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSH-IKAYMLMTL 122

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
            +++    +LG G FG V++    A G+    K ++          KNE++++ +L H  
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK 109

Query: 449 LVRLLGCCLEGQELLLIYEYM 469
           L+ L     +  E++LI E++
Sbjct: 110 LINLHDAFEDKYEMVLILEFL 130

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
            S    LG G FG V+K    A G  +A K +     +  +E KNE++++ +L H NL++
Sbjct: 91  VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ 150

Query: 452 LLGCCLEGQELLLIYEYM 469
           L        +++L+ EY+
Sbjct: 151 LYDAFESKNDIVLVMEYV 168

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 368 GGKQQAESQEFPLFPLRLALEATNHFSD----ENKLGQGGFGPVYKGT-LADGKAIAVKR 422
           G +      +    P         H S+      KLG G +G V            A+K 
Sbjct: 10  GRENLYFQGDLQATPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKI 69

Query: 423 LSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY 468
           + +T  S     +   EV ++  L H N+++L     + +   L+ E 
Sbjct: 70  IRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMEC 117

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 6/91 (6%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT------LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK 443
           +      + LG+G F  VY+ T        + +   +K     +          +  +  
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
                 ++     L     +L+ E     +L
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTL 154

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHK 447
              F     +G G +G VYKG  +  G+  A+K +   +G   +E K E+N++ K   H+
Sbjct: 23  AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD-VTGDEEEEIKQEINMLKKYSHHR 81

Query: 448 NLVRLLGCCLEG------QELLLIYEYMPNKSL 474
           N+    G  ++        +L L+ E+    S+
Sbjct: 82  NIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSV 114

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 366 LRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVK--- 421
           +      +  +E   F     LE    +  +  +GQG +G V            A+K   
Sbjct: 1   MHHHHHHSSGRENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMN 60

Query: 422 --RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL 474
             ++ + + + ++  K EV L+ KL H N+ RL     + Q + L+ E      L
Sbjct: 61  KNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
              +     LG+G FG V++    +  K    K + +  G      K E++++   +H+N
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFV-KVKGTDQVLVKKEISILNIARHRN 62

Query: 449 LVRLLGCCLEGQELLLIYEYM 469
           ++ L       +EL++I+E++
Sbjct: 63  ILHLHESFESMEELVMIFEFI 83

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
            +G G +G   K    +DGK +  K       +    Q   +EVNL+ +L+H N+VR   
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 72

Query: 455 CCLE--GQELLLIYEY 468
             ++     L ++ EY
Sbjct: 73  RIIDRTNTTLYIVMEY 88

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVK-----RLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
            +G+G F  V +      G+  AVK     + + + G   ++ K E ++   L+H ++V 
Sbjct: 31  VIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVE 90

Query: 452 LLGCCLEGQELLLIYEYM 469
           LL        L +++E+M
Sbjct: 91  LLETYSSDGMLYMVFEFM 108

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQH 446
              ++    LG+G FG V K       +  AVK +++     +       EV L+ KL H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 447 KNLVRLLGCCLEGQELLLIYEY 468
            N+++L     +     ++ E 
Sbjct: 81  PNIMKLFEILEDSSSFYIVGEL 102

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 10/143 (6%)

Query: 330 YRRRRHARDQEEKRNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLFPLRLALEA 389
           +    H+   +    +    +     +++           +        P  P     + 
Sbjct: 2   HHHHHHSSGVDLGTENL---YFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQ- 57

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKL-Q 445
              F   ++LG G +G V+K     DG+  AVK         +       EV    K+ Q
Sbjct: 58  --SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQ 115

Query: 446 HKNLVRLLGCCLEGQELLLIYEY 468
           H   VRL     EG  L L  E 
Sbjct: 116 HPCCVRLEQAWEEGGILYLQTEL 138

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQ 445
           ++ +  +  LG+G FG V        G+  AVK +S+         +    EV L+ +L 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 446 HKNLVRLLGCCLEGQELLLIYEY 468
           H N+++L     +     L+ E 
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEV 107

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 20/116 (17%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAK 443
           F    K+G+G +G VYK      G+ +A+K++       L             E++L+ +
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR------LDTETEGVPSTAIREISLLKE 58

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMPN---KSLDVH-LFGLSLSLSIKCYLLYIL 495
           L H N+V+LL       +L L++E++     K +D   L G+ L L IK YL  +L
Sbjct: 59  LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPL-IKSYLFQLL 113

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 19/140 (13%)

Query: 368 GGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT 426
           G      S    L    L  ++   + +   +G+G +G V K      G+ +A+K+    
Sbjct: 2   GHHHHHHSSGVDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFL-- 59

Query: 427 SGQGLQEFKN--------EVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN---KSLD 475
                 +           E+ L+ +L+H+NLV LL  C + +   L++E++ +     L+
Sbjct: 60  ----ESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLE 115

Query: 476 VHLFGLSLSLSIKCYLLYIL 495
           +   GL   + ++ YL  I+
Sbjct: 116 LFPNGLDYQV-VQKYLFQII 134

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHK 447
            K+G+G +G V+K      G+ +A+K+          E           E+ ++ +L+H 
Sbjct: 9   GKIGEGSYGVVFKCRNRDTGQIVAIKKF------LESEDDPVIKKIALREIRMLKQLKHP 62

Query: 448 NLVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           NLV LL      + L L++EY  +     LD +  G+   L +K      L
Sbjct: 63  NLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHL-VKSITWQTL 112

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN-EVNLIAKLQH 446
           +    +++   +G G FG V++  L +   +A+K++ +      + FKN E+ ++  ++H
Sbjct: 37  QREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD-----KRFKNRELQIMRIVKH 91

Query: 447 KNLVRLLGCCLEGQE------LLLIYEYMPNKSLDVH 477
            N+V L        +      L L+ EY+P     V+
Sbjct: 92  PNVVDLKAFFYSNGDKKDEVFLNLVLEYVP---ETVY 125

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-----LQEFKNEVNLIAKL 444
             +   +KLG+G +  VYKG        +A+K +     +G     ++E    V+L+  L
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIRE----VSLLKDL 57

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           +H N+V L       + L L++EY+     + LD     +++   +K +L  +L
Sbjct: 58  KHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHN-VKLFLFQLL 110

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQH 446
              ++    LG+G FG V K       +  AVK +++     +       EV L+ KL H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 447 KNLVRLLGCCLEGQELLLIYEYM 469
            N+++L     +     ++ E  
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELY 103

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHK 447
            KLG+G +G VYK       + +A+KR+       L+  +         EV+L+ +LQH+
Sbjct: 40  TKLGEGTYGEVYKAIDTVTNETVAIKRIR------LEHEEEGVPGTAIREVSLLKELQHR 93

Query: 448 NLVRLLGCCLEGQELLLIYEYMPN--KSLDVHLFGLSLSLSIKCYLLYIL 495
           N++ L         L LI+EY  N  K        +S+ + IK +L  ++
Sbjct: 94  NIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRV-IKSFLYQLI 142

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             +++ EN +G+G +G V            A K++ +   + +  FK E+ ++  L H N
Sbjct: 8   NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN 67

Query: 449 LVRLLGCCLEGQELLLIYEYM 469
           ++RL     +  ++ L+ E  
Sbjct: 68  IIRLYETFEDNTDIYLVMELC 88

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 390 TNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIA 442
           +  FSD      +LG+G F  V +      G   A K ++    S +  Q+ + E  +  
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYM 469
           KLQH N+VRL     E     L+++ +
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDLV 87

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 393 FSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVR 451
           F  ++ LG G  G +    + D + +AVKR+     +       EV L+ +  +H N++R
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILP---ECFSFADREVQLLRESDEHPNVIR 82

Query: 452 LLGCCLEGQELLLIYEYMP 470
                 + Q   +  E   
Sbjct: 83  YFCTEKDRQFQYIAIELCA 101

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLL 453
              L +GGF  VY+   +  G+  A+KRL     +  +    EV  + KL  H N+V+  
Sbjct: 33  RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFC 92

Query: 454 GCCL-------EGQELLLIYEYMPNKSL 474
                       GQ   L+   +    L
Sbjct: 93  SAASIGKEESDTGQAEFLLLTELCKGQL 120

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRLLGC 455
            LGQG    V++G     G   A+K  +  S     +    E  ++ KL HKN+V+L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAI 75

Query: 456 --CLEGQELLLIYEYMPNKSL 474
                 +  +LI E+ P  SL
Sbjct: 76  EEETTTRHKVLIMEFCPCGSL 96

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 382 PLRLALEATNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEF 434
                + A+  FSD      +LG+G F  V +      G   A K ++    S +  Q+ 
Sbjct: 16  GSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKL 75

Query: 435 KNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM 469
           + E  +  KLQH N+VRL     E     L+++ +
Sbjct: 76  EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLV 110

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 368 GGKQQAESQEFPLFPLRLALEATNHFSD----ENKLGQGGFGPVYKGT-LADGKAIAVKR 422
            G++    Q   + P     +      +      KLG G +G V            A+K 
Sbjct: 9   SGRENLYFQGIAINPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKV 68

Query: 423 LSR-------------TSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY 468
           + +                +  +E  NE++L+  L H N+++L     + +   L+ E+
Sbjct: 69  IKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEF 127

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAKLQHK 447
            + F  + KLG G FG V+     + G    +K +++   Q  +++ + E+ ++  L H 
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 448 NLVRLLGCCLEGQELLLIYEYM 469
           N++++     +   + ++ E  
Sbjct: 81  NIIKIFEVFEDYHNMYIVMETC 102

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 387 LEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-----LQEFKNEVNL 440
           + +++ F    KLG G +  VYKG     G  +A+K +   S +G     ++E    ++L
Sbjct: 1   MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIRE----ISL 56

Query: 441 IAKLQHKNLVRLLGCCLEGQELLLIYEYMPN------KSLDVHLFGLSLSLS-IKCYLLY 493
           + +L+H+N+VRL        +L L++E+M N       S  V      L L+ +K +   
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQ 116

Query: 494 IL 495
           +L
Sbjct: 117 LL 118

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRLLGC 455
            LGQG    V++G     G   A+K  +  S     +    E  ++ KL HKN+V+L   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAI 75

Query: 456 --CLEGQELLLIYEYMPNKSL 474
                 +  +LI E+ P  SL
Sbjct: 76  EEETTTRHKVLIMEFCPCGSL 96

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 373 AESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQ 432
           +     P F   L     N    E  LG G  G V       G+ +AVKR+         
Sbjct: 1   SRIANIPNFEQSL----KNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLI---DFCD 53

Query: 433 EFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYM 469
               E+ L+ +   H N++R        + L +  E  
Sbjct: 54  IALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELC 91

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 390 TNHFSD-----ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK 443
           +  F D     E+ LG+G    V     L   +  AVK + +  G        EV ++ +
Sbjct: 7   SGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQ 66

Query: 444 LQ-HKNLVRLLGCCLEGQELLLIYEYM 469
            Q H+N++ L+    E     L++E M
Sbjct: 67  CQGHRNVLELIEFFEEEDRFYLVFEKM 93

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVK------RLSRTSGQGLQEFKNEVNLIA 442
            +H+    +LG G F  V K      GK  A K        S   G   +E + EVN++ 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYM 469
           +++H N++ L        +++LI E +
Sbjct: 64  EIRHPNIITLHDIFENKTDVVLILELV 90

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRL------SRTSGQGLQEFKNEVNLIA 442
            +++    +LG G F  V K    + G   A K +      S   G   ++ + EV+++ 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYM 469
           ++QH N++ L        +++LI E +
Sbjct: 70  EIQHPNVITLHEVYENKTDVILILELV 96

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVK------RLSRTSGQGLQEFKNEVNLIA 442
            + +    +LG G F  V K    + G   A K        +   G   +E + EV+++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYM 469
           ++ H N++ L        +++LI E +
Sbjct: 71  QVLHPNIITLHDVYENRTDVVLILELV 97

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 23/119 (19%)

Query: 390 TNHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKN-EVNLIAKLQHK 447
              ++D   +G G FG VY+  L D G+ +A+K++ +      + FKN E+ ++ KL H 
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD-----KRFKNRELQIMRKLDHC 107

Query: 448 NLVRLLGCCLEGQE------LLLIYEYMPNKSLDVH-------LFGLSLSLSIKCYLLY 493
           N+VRL        E      L L+ +Y+P     V+           +L +      +Y
Sbjct: 108 NIVRLRYFFYSSGEKKDEVYLNLVLDYVP---ETVYRVARHYSRAKQTLPVIYVKLYMY 163

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 385 LALEATNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNE 437
           +A      F++E     +LG+G F  V +   +  G+  A   ++    S +  Q+ + E
Sbjct: 1   MATITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLERE 60

Query: 438 VNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM 469
             +   L+H N+VRL     E     LI++ +
Sbjct: 61  ARICRLLKHPNIVRLHDSISEEGHHYLIFDLV 92

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
              LG G F  V+       GK  A+K + ++        +NE+ ++ K++H+N+V L  
Sbjct: 14  MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLED 73

Query: 455 CCLEGQELLLIYEYMP 470
                    L+ + + 
Sbjct: 74  IYESTTHYYLVMQLVS 89

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVK------RLSRTSGQGLQEFKNEVNLIA 442
            + +    +LG G F  V K    + G   A K        +   G   +E + EV+++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 443 KLQHKNLVRLLGCCLEGQELLLIYEYM 469
           ++ H N++ L        +++LI E +
Sbjct: 71  QVLHHNVITLHDVYENRTDVVLILELV 97

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLS-RTSGQGLQEFKNEVNLIAKLQHKN 448
             F     +G+GGFG V++     D    A+KR+         ++   EV  +AKL+H  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKC 489
           +VR     LE        E       D        S S   
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMD 106

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQE-FKNEVNLIAKLQHKNLVRLLG 454
           LG+GGF   ++ +     +  A K + ++       +E    E+++   L H+++V   G
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108

Query: 455 CCLEGQELLLIYEYMPNKSL 474
              +   + ++ E    +SL
Sbjct: 109 FFEDNDFVFVVLELCRRRSL 128

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQE-FKNEVNLIAKLQHKNLVRLLG 454
           LG+GGF   ++ +     +  A K + ++       +E    E+++   L H+++V   G
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 82

Query: 455 CCLEGQELLLIYEYMPNKSL 474
              +   + ++ E    +SL
Sbjct: 83  FFEDNDFVFVVLELCRRRSL 102

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 17/113 (15%)

Query: 398 KLGQGGFGPVYKG---TLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
           K+G+G +G VYK       D K  A+K++   +G  +   + E+ L+ +L+H N++ L  
Sbjct: 28  KVGRGTYGHVYKAKRKDGKDDKDYALKQI-EGTGISMSACR-EIALLRELKHPNVISLQK 85

Query: 455 CCLEGQE--LLLIYEYMPN---KSLDVHLFGLSLSLS-------IKCYLLYIL 495
             L   +  + L+++Y  +     +  H    +           +K  L  IL
Sbjct: 86  VFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQIL 138

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 27/119 (22%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQHK 447
            K+GQG FG V+K      G+ +A+K++       ++  K         E+ ++  L+H+
Sbjct: 23  AKIGQGTFGEVFKARHRKTGQKVALKKVL------MENEKEGFPITALREIKILQLLKHE 76

Query: 448 NLVRLLGCCLEGQE--------LLLIYEYMPN---KSLDVHLFGLSLSLSIKCYLLYIL 495
           N+V L+  C             + L++++  +     L   L   +LS  IK  +  +L
Sbjct: 77  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSE-IKRVMQMLL 134

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRLL-- 453
           +LG GGFG V +      G+ +A+K+  +      +E +  E+ ++ KL H N+V     
Sbjct: 21  RLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREV 80

Query: 454 ----GCCLEGQELLLIYEYMPNKSL 474
                        LL  EY     L
Sbjct: 81  PDGLQKLAPNDLPLLAMEYCEGGDL 105

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 2/108 (1%)

Query: 370 KQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG 428
           +Q+   + F     ++     + F   ++LG G  G V+K +    G  +A K +     
Sbjct: 12  QQRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK 71

Query: 429 QGLQEF-KNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLD 475
             ++     E+ ++ +     +V   G      E+ +  E+M   SLD
Sbjct: 72  PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLD 119

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 371 QQAESQEFPLFPLRLALEATNHFSD-----ENKLGQGGFGPVYKGT-LADGKAIAVK--R 422
               S    L    L  ++  +F++       +LG+G F  V +    + G+  A K  +
Sbjct: 4   HHHHSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLK 63

Query: 423 LSRTSGQGLQEFKNEVNLIAKLQH-KNLVRLLGCCLEGQELLLIYEYM 469
             R       E  +E+ ++   +    ++ L        E++LI EY 
Sbjct: 64  KRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYA 111

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQE-FKNEVNLIAKLQHKNLVRLLG 454
           LG+G F  VY+   +  G  +A+K + + +    G+ +  +NEV +  +L+H +++ L  
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78

Query: 455 CCLEGQELLLIYEYMPNKSL 474
              +   + L+ E   N  +
Sbjct: 79  YFEDSNYVYLVLEMCHNGEM 98

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSR--------TSGQGLQEFKNEVNLIAKLQHKN 448
            LG G  G V         K +A++ +S+                 + E+ ++ KL H  
Sbjct: 142 TLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPC 201

Query: 449 LVRLLGCCLEGQELLLIYEYMP 470
           ++++     + ++  ++ E M 
Sbjct: 202 IIKIKNFF-DAEDYYIVLELME 222

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 33/128 (25%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRL-------SRTSGQGLQEFKNEVN 439
           +  + F  E   GQG FG V  G     G ++A+K++       +R     LQ  +    
Sbjct: 20  KEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRE----LQIMQ---- 71

Query: 440 LIAKLQHKNLVRLLGCCLEGQE-------LLLIYEYMPNKSLDVH-------LFGLSLSL 485
            +A L H N+V+L        E       L ++ EY+P     +H          ++   
Sbjct: 72  DLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVP---DTLHRCCRNYYRRQVAPPP 128

Query: 486 SIKCYLLY 493
            +    L+
Sbjct: 129 ILIKVFLF 136

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLL 453
           +  LG+G F    K       +A AVK +S+         + E+  +   + H N+V+L 
Sbjct: 16  DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLH 72

Query: 454 GCCLEGQELLLIYEYM 469
               +     L+ E +
Sbjct: 73  EVFHDQLHTFLVMELL 88

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 376 QEFPLFPLRLAL-EATNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQ 429
           Q   +  +   L   +  F+D       +G G +    +    A     AVK + ++   
Sbjct: 2   QTVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD 61

Query: 430 GLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYM 469
                  E+ ++ +  QH N++ L     +G+ + ++ E M
Sbjct: 62  P----TEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELM 98

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE--------FKNEVNLIAKLQHKN 448
            LG G  G V         K +A+K +S+                 + E+ ++ KL H  
Sbjct: 17  TLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPC 76

Query: 449 LVRLLGCCLEGQELLLIYEYMP 470
           ++++     + ++  ++ E M 
Sbjct: 77  IIKIKNFF-DAEDYYIVLELME 97

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
           +LG+G    VY+       K  A+K L +T  +  +  + E+ ++ +L H N+++L    
Sbjct: 60  ELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK--KIVRTEIGVLLRLSHPNIIKLKEIF 117

Query: 457 LEGQELLLIYEYM 469
               E+ L+ E +
Sbjct: 118 ETPTEISLVLELV 130

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 11/97 (11%), Positives = 23/97 (23%), Gaps = 4/97 (4%)

Query: 364 NILRGGKQQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKR 422
            ++         Q        L  +          L  G    V+    +   +  A+K 
Sbjct: 35  AMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKV 94

Query: 423 L---SRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
               +  S   L+         A+L  ++        
Sbjct: 95  FTMGAENSRSELERLHEATFAAARLLGESPEEARDRR 131

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKL-QHK 447
               D  ++G+G +G V K      G+ +AVKR+  T   +  ++   +++++ +     
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLD 475
            +V+  G      +  +  E M + S D
Sbjct: 82  YIVQFYGALFREGDCWICMELM-STSFD 108

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 14/116 (12%)

Query: 369 GKQQAESQEFPLFPLRLALEATNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRL 423
           G +    Q            A   F  +    + +G+G    V +    A G   AVK +
Sbjct: 68  GTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIM 127

Query: 424 SRTSGQGLQE--------FKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMP 470
             T+ +   E         + E +++ ++  H +++ L+        + L+++ M 
Sbjct: 128 EVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMR 183

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRT----SGQGLQEFKNEVNLIAKLQHKNLVR 451
             LG+G FG VY          +A+K L +     +G   Q  + EV + + L+H N++R
Sbjct: 15  RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ-LRREVEIQSHLRHPNILR 73

Query: 452 LLGCCLEGQELLLIYEYMPNKSLDVHL 478
           L G   +   + LI EY P  ++   L
Sbjct: 74  LYGYFHDATRVYLILEYAPLGTVYREL 100

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 19/117 (16%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLS-RTSGQGLQEFKN----EVNLIAKLQ---HK 447
            ++G G +G VYK      G  +A+K +     G G          EV L+ +L+   H 
Sbjct: 15  AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHP 74

Query: 448 NLVRLLGCCLEGQE-----LLLIYEYMPN--KSL--DVHLFGLSLSLSIKCYLLYIL 495
           N+VRL+  C   +      + L++E++    ++        GL     IK  +   L
Sbjct: 75  NVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAET-IKDLMRQFL 130

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKN 448
           ++      LG G  G V +       +  A+K L         + + EV L  +  Q  +
Sbjct: 18  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPH 72

Query: 449 LVRLLGCC----LEGQELLLIYEYM 469
           +VR++          + LL++ E +
Sbjct: 73  IVRIVDVYENLYAGRKCLLIVMECL 97

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 388 EATNHFSDE----NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGL---------QE 433
            +T+ F +       LG+G    V +       K  AVK +  T G            + 
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 434 FKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMP 470
              EV+++ K+  H N+++L           L+++ M 
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMK 107

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 368 GGKQQAESQEFPLFPLRLALEA-TNHFSDE-----NKLGQGGFGPVYKGT-LADGKAIAV 420
                   Q+FP F ++  L+   N   D+       LG G  G V +       +  A+
Sbjct: 33  AQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFAL 92

Query: 421 KRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLG----CCLEGQELLLIYEYM 469
           K L         + + EV L  +     ++VR++          + LL++ E +
Sbjct: 93  KMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECL 141

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN------EVNLIAKLQHK--NL 449
           LG GGFG VY G  ++D   +A+K + +       E  N      EV L+ K+      +
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 110

Query: 450 VRLLGCCLEGQELLLIYEY 468
           +RLL         +LI E 
Sbjct: 111 IRLLDWFERPDSFVLILER 129

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 29/121 (23%)

Query: 397 NKLGQGGFGPVYKG--TLADGKAIAVKRLSRTSGQGLQEFKN--------EVNLIAKLQ- 445
            ++G+G +G V+K       G+ +A+KR+       +Q  +         EV ++  L+ 
Sbjct: 17  AEIGEGAYGKVFKARDLKNGGRFVALKRVR------VQTGEEGMPLSTIREVAVLRHLET 70

Query: 446 --HKNLVRLLGCCLEGQE-----LLLIYEYMPN--KSL--DVHLFGLSLSLSIKCYLLYI 494
             H N+VRL   C   +      L L++E++     +    V   G+     IK  +  +
Sbjct: 71  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTET-IKDMMFQL 129

Query: 495 L 495
           L
Sbjct: 130 L 130

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG-QGLQEFKNEVN-LIAKLQHK 447
           +      +LG+G +G V K   +  G+ +AVKR+  T   Q  +    +++  +  +   
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLD 475
             V   G      ++ +  E M + SLD
Sbjct: 67  FTVTFYGALFREGDVWICMELM-DTSLD 93

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 398 KLGQGGFGPVYKG--TLADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVR 451
            +  GG G +Y       +G+ + +K L  +     Q     E   +A++ H ++V+
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQ 143

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKL-QHK 447
           N   +  ++G G  G V+K      G  IAVK++ R+   +  +    +++++ K     
Sbjct: 25  NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCP 84

Query: 448 NLVRLLGCCLEGQELLLIYEYM 469
            +V+  G  +   ++ +  E M
Sbjct: 85  YIVQCFGTFITNTDVFIAMELM 106

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 395 DENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRL 452
            +  LG G  G V +      G+  A+K L  +      + + EV+   +     ++V +
Sbjct: 33  SKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCI 87

Query: 453 LGCCLEGQELLLIYEYMPNKSLDVHL 478
           L           +YE M +    + +
Sbjct: 88  LD----------VYENMHHGKRCLLI 103

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 399 LGQGGFGPVYKG-TLADGKAIAVKRLSRT--SGQGLQE-FKNEVNLIAKLQHKNLVRLLG 454
           LG+G FG VY      +   +A+K L ++    +G++   + E+ + + L+H N++R+  
Sbjct: 22  LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81

Query: 455 CCLEGQELLLIYEYMPNKSLDVHL 478
              + + + L+ E+ P   L   L
Sbjct: 82  YFHDRKRIYLMLEFAPRGELYKEL 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 59/436 (13%), Positives = 118/436 (27%), Gaps = 107/436 (24%)

Query: 119 PDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQKCSGTKEAFIWYQVQ-ECMVRFSDHSSS 177
            D+V G     F       +  +   V  VL+        F+   ++ E           
Sbjct: 58  KDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQR--------- 103

Query: 178 IMDTSAPLCMKIFQNTYNVTKSLAQSFN--DVIAMPSLSSFRNATKRTNISNIIRLET-- 233
               S     +++    +   +  Q F   +V  +      R A      +  + ++   
Sbjct: 104 --QPSMM--TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 234 -FGQCIPVLSVDDCRD-----CLNNTIRWIQRCFDPPGMGFGRILFPSCIMGFELYRYSK 287
             G+    +++D C        ++  I W+                P  ++        +
Sbjct: 160 GSGK--TWVALDVCLSYKVQCKMDFKIFWL---------NLKNCNSPETVLEMLQKLLYQ 208

Query: 288 V-PAVGALAPSSAPGGKRGRAISIAIGTTLS------ALIV---VLFGSFLWYRRRRHAR 337
           + P   + +  S+    R  +I   +   L        L+V   V         +  +A 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV------QNAKAWNAF 262

Query: 338 DQEEK-----RNSQEVQFLHWEGRIRNHYAYNILRGGKQQAESQEFPLF-------PLRL 385
           +   K     R  Q   FL        H + +         E +   L        P  L
Sbjct: 263 NLSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDL 318

Query: 386 ALEATNHFSDENKLGQGGFGPVYKGTLA--DG-KAIAVKRLSRTSGQGLQE--------- 433
             E        N           +  LA  D  K +   +L+      L           
Sbjct: 319 PREVLTT----NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 434 ------FKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSL--------DVHLF 479
                 F    ++   L    L  L+   +   +++++   +   SL         + + 
Sbjct: 375 FDRLSVFPPSAHIPTIL----LS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 480 GLSLSLSIKCYLLYIL 495
            + L L +K    Y L
Sbjct: 430 SIYLELKVKLENEYAL 445

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 398 KLGQGGFGPVYKGTLAD---GKAIAVKRLSRTSG---QGLQEFKNEVNLIAKLQHKNLVR 451
             G       ++    D    + +A+  +          LQE  +    ++++    + R
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 452 LLGCCLEGQELLLIYEYMPNKSL 474
           +L         L++ E++   SL
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSL 118

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRT------SGQGLQEFKNEVNLIAKL----QHK 447
           LG+GGFG V+ G  L D   +A+K + R                 EV L+ K+     H 
Sbjct: 39  LGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHP 98

Query: 448 NLVRLLGCCLEGQELLLIYEY 468
            ++RLL      +  +L+ E 
Sbjct: 99  GVIRLLDWFETQEGFMLVLER 119

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRLLGCC 456
           LG+G +G V         +A+AVK +         E  K E+ +   L H+N+V+  G  
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 457 LEGQELLLIYEYMPN 471
            EG    L  EY   
Sbjct: 75  REGNIQYLFLEYCSG 89

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKLQHKNLVRL 452
           LG+G +G V +          AVK L +        G    K E+ L+ +L+HKN+++L
Sbjct: 13  LGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 28/124 (22%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKN---------E 437
           +  + +   + +G G +G V +     + + +A+K++ R        F++         E
Sbjct: 50  QIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR-------VFEDLIDCKRILRE 102

Query: 438 VNLIAKLQHKNLVRLL-----GCCLEGQELLLIYEYMPNKSLDVHLF---GLSLSLSIKC 489
           + ++ +L H ++V++L         +  EL ++ E       D        + L+     
Sbjct: 103 IAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD---SDFKKLFRTPVYLTELHIK 159

Query: 490 YLLY 493
            LLY
Sbjct: 160 TLLY 163

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 399 LGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKNLVRLLGCC 456
           LG+G +G V         +A+AVK +         E  K E+ +   L H+N+V+  G  
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 457 LEGQELLLIYEYMPN 471
            EG    L  EY   
Sbjct: 75  REGNIQYLFLEYCSG 89

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 398 KLGQGGFGPVY---------------KGTLADGKAIAVKRLSRTSGQGLQE-FKNEVNLI 441
            L QG F  +                K  L   +        + S +   + FKNE+ +I
Sbjct: 38  TLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 442 AKLQHKNLVRLLGCCLEGQELLLIYEYMPN 471
             ++++  +   G      E+ +IYEYM N
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYIIYEYMEN 127

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 28/123 (22%)

Query: 371 QQAESQEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--- 427
            Q     F           T       K+G+G FG V++   AD   +A+K ++      
Sbjct: 6   SQKGPVPFSHCL------PTEKLQRCEKIGEGVFGEVFQTI-ADHTPVAIKIIAIEGPDL 58

Query: 428 -----GQGLQEFKNEVNLIAKLQ---------HKNLVRLLGCCL----EGQELLLIYEYM 469
                 +  +E   E+ +  +L           +  + L             LL  +++ 
Sbjct: 59  VNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHY 118

Query: 470 PNK 472
            + 
Sbjct: 119 NST 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.92
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.92
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.69
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.69
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.66
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.65
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.65
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.62
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.62
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.61
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.6
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.57
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.56
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.54
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.52
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.5
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.5
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.49
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.46
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.45
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.39
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.37
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.37
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.35
3uqc_A	286	Probable conserved transmembrane protein; structur	99.34
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.33
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.33
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.32
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.32
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.29
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.29
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.28
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.28
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.28
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.27
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.27
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.26
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.25
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.25
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.25
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.25
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.25
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.24
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.24
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.24
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.24
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.24
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.24
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.23
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.23
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.23
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.22
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.22
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.22
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.22
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.22
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.22
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.21
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.21
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.21
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.21
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.21
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.21
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.21
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.2
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.2
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.2
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.2
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.2
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.2
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.19
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.19
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.19
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.19
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.19
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.19
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.19
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.18
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.18
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.18
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.18
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.18
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.17
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.17
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.17
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.17
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.17
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.17
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.17
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.16
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.16
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.16
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.16
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.16
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.16
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.16
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.15
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.15
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.15
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.15
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.15
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.15
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.15
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.15
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.15
3niz_A	311	Rhodanese family protein; structural genomics, str	99.15
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.15
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.15
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.14
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.14
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.14
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.14
3bhy_A	283	Death-associated protein kinase 3; death associate	99.14
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.14
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.13
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.13
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.13
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.13
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.13
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.13
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.13
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.12
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.12
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.12
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.12
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.12
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.11
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.11
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.11
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.11
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.11
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.11
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.11
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.1
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.1
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.1
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.1
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.1
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.09
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.09
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.08
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.08
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.07
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.05
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.05
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.05
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.05
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.03
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.03
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.02
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.02
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.02
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.02
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.02
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.02
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.02
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.99
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.99
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	98.99
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	98.99
3an0_A	340	Dual specificity mitogen-activated protein kinase;	98.99
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	98.99
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.98
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	98.98
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	98.98
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.97
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	98.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	98.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.96
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	98.96
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.95
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.94
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	98.94
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.93
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.93
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.93
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	98.93
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	98.93
3aln_A	327	Dual specificity mitogen-activated protein kinase;	98.92
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	98.92
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.91
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	98.9
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.89
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.88
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.87
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	98.87
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.86
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	98.85
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	98.84
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.84
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.82
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.82
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.81
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.79
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.79
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.79
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	98.78
2dyl_A	318	Dual specificity mitogen-activated protein kinase	98.77
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.76
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.75
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.75
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	98.74
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.74
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.73
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.71
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	98.7
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.67
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.65
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	98.56
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.55
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.46
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.02
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.87
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.78
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.29
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.9
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.49
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	93.39
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	92.66
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	90.62
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	89.58
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	89.16
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	88.46
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	87.33
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	83.14
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	82.29
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	81.07

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.92  E-value=1.7e-25  Score=185.50  Aligned_cols=99  Identities=20%  Similarity=0.449  Sum_probs=89.4

Q ss_pred             cccCCCCccCCCchHHHHHHHHHhhHHhhhhc--CCCceeeccCC-CCCeEEEEEeccCCCChhchHHHHHHHHHHHHhc
Q 011025           75 VLSCAVSNNTASNTFTSNLNILFNQKLHSEAG--KSLYYNASEGE-FPDSVYGLYLCKFNVSFQSCQNCIVAAVNSVLQK  151 (495)
Q Consensus        75 ~~~c~~~~~~~~~~f~~nl~~ll~~~l~~~a~--~~~f~~~~~g~-~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~  151 (495)
                      +..|+.++|+++++|++||+.||++ |.++++  ..+|+++..|. ++++||||+|||||+++++|+.||+.|+.++++.
T Consensus         7 ~~~Cn~~~~t~~s~f~~nl~~ll~~-L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~   85 (108)
T 3a2e_A            7 SSACNTQKIPSGSPFNRNLRAMLAD-LRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSI   85 (108)
T ss_dssp             EEEECSSBCCTTCTHHHHHHHHHHH-HHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHH
T ss_pred             eeecCCCccCCCChHHHHHHHHHHH-HHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence            3489999999999999999999999 887776  44577776654 4589999999999999999999999999999999


Q ss_pred             CCCCceEEEEeecCceEEEEcCCCC
Q 011025          152 CSGTKEAFIWYQVQECMVRFSDHSS  176 (495)
Q Consensus       152 C~~~~~a~i~~~~~~C~lRy~~~~f  176 (495)
                      ||+++||+||++  .|++|||+++|
T Consensus        86 C~~~~g~~i~~~--~C~lRY~~~~F  108 (108)
T 3a2e_A           86 CNNAIGARVQLV--DCFIQYEQRSF  108 (108)
T ss_dssp             TTSBSSEEEEET--TEEEEEESSCC
T ss_pred             CCCCceEEEECC--CEEEEEeCCcC
Confidence            999999999999  99999999986

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.69  E-value=3.7e-17  Score=160.81  Aligned_cols=92  Identities=32%  Similarity=0.627  Sum_probs=80.9

Q ss_pred             cCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      .++|...++||+|+||.||+|.+.      ++..||||+++..+.+..++|.+|+.+|++++|||||+++|++..+++.+
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            356778899999999999999853      46789999999877777889999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      |||||+++|+|.++|+..
T Consensus        92 lV~Ey~~~G~L~~~l~~~  109 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAH  109 (299)
T ss_dssp             EEEECCTTCBHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHhc
Confidence            999999999999999754

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.69  E-value=5.5e-17  Score=161.72  Aligned_cols=92  Identities=35%  Similarity=0.621  Sum_probs=83.1

Q ss_pred             CCcccccccccCCceeEEeeeec------CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|.+.      ++..||||+++..+.+..++|.+|+.+|++++|||||+++|+|..+++.+|
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            46777889999999999999853      477899999998777778899999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      ||||+++|+|.++|+...
T Consensus       121 V~Ey~~~G~L~~~l~~~~  138 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHG  138 (329)
T ss_dssp             EEECCTTCBHHHHHHTSS
T ss_pred             EEEcCCCCcHHHHHHhcC
Confidence            999999999999998653

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.66  E-value=1.1e-16  Score=132.29  Aligned_cols=92  Identities=21%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             eccCcccccchhhhhhhhhc-----c---cCCCccceecccccccCcceeeEEEEeecCCChhhhHHHHHHHHHhhhhhc
Q 011025          190 FQNTYNVTKSLAQSFNDVIA-----M---PSLSSFRNATKRTNISNIIRLETFGQCIPVLSVDDCRDCLNNTIRWIQRCF  261 (495)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~-----l---~~~~~~~~a~~~~~~~~~~~~y~l~QC~~dls~~~C~~CL~~~~~~~~~c~  261 (495)
                      .++..+++ .... |++.+.     |   +..+..+|+++.....+.++||||+||++||++++|+.||+.++..+++||
T Consensus         9 ~Cn~~~~t-~~s~-f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C   86 (108)
T 3a2e_A            9 ACNTQKIP-SGSP-FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSIC   86 (108)
T ss_dssp             EECSSBCC-TTCT-HHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHHT
T ss_pred             ecCCCccC-CCCh-HHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHC
Confidence            34555555 3333 655554     2   344566777776666677899999999999999999999999999999999


Q ss_pred             CCCCCcceEEEccccccccccccc
Q 011025          262 DPPGMGFGRILFPSCIMGFELYRY  285 (495)
Q Consensus       262 ~~~g~~gg~v~~~~C~~r~e~~~f  285 (495)
                      +  ++.||+++.++|++|||+++|
T Consensus        87 ~--~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           87 N--NAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             T--SBSSEEEEETTEEEEEESSCC
T ss_pred             C--CCceEEEECCCEEEEEeCCcC
Confidence            9  899999999999999999987

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.65  E-value=1.6e-16  Score=156.83  Aligned_cols=90  Identities=37%  Similarity=0.532  Sum_probs=77.5

Q ss_pred             CcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++...++||+|+||.||+|.+.      +++.||||+++.. .....++|.+|+.++++++|||||+++|+|..+++.+|
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            4566788999999999999862      4678999999754 33456889999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ||||+++|||.++|+..
T Consensus       107 V~Ey~~~G~L~~~L~~~  123 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMR  123 (308)
T ss_dssp             EEECCSSCBHHHHHHTT
T ss_pred             EEEcCCCCcHHHHHHhh
Confidence            99999999999999753

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.62  E-value=1.1e-15  Score=153.09  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=81.8

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++. ..+|+.||||+++..  +....+.|.+|+.++++++|||||++++++..++..+||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            578899999999999999998 457999999999754  34556789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCC---C-HHHHHHHHHh
Q 011025          468 YMPNKSLDVHLFGLSL---S-LSIKCYLLYI  494 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~---~-~~~~~~l~~~  494 (495)
                      |+++|+|.++|...+.   . .....++.|+
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi  134 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQI  134 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            9999999999965431   2 2345555554

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.62  E-value=6.4e-16  Score=154.42  Aligned_cols=104  Identities=26%  Similarity=0.383  Sum_probs=88.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +.|...++||+|+||.||++.. .+|+.||||+++.......+.+.+|+.+|++++|||||++++++..++.++|||||+
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4688889999999999999984 579999999997655555667899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          470 PNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      ++|+|.+++........ ...++.|+
T Consensus       154 ~gg~L~~~l~~~~l~e~~~~~~~~qi  179 (346)
T 4fih_A          154 EGGALTDIVTHTRMNEEQIAAVCLAV  179 (346)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999987655444 44455444

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=149.73  Aligned_cols=96  Identities=27%  Similarity=0.478  Sum_probs=80.1

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ..+++...++||+|+||.||+|.+.  ..||||.++..  +.+..++|.+|+.++++++|||||+++|++.. ++++|||
T Consensus        34 ~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm  110 (307)
T 3omv_A           34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT  110 (307)
T ss_dssp             CTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             cHHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence            3456778899999999999999874  36999999743  45567889999999999999999999998864 5689999


Q ss_pred             ecCCCCCHHHHHhcCCCCHHH
Q 011025          467 EYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      ||+++|+|.++|+......++
T Consensus       111 Ey~~gGsL~~~l~~~~~~l~~  131 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQETKFQM  131 (307)
T ss_dssp             ECCSSCBHHHHHHTSCCCCCH
T ss_pred             EcCCCCCHHHHHhhcCCCCCH
Confidence            999999999999865544443

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=155.55  Aligned_cols=105  Identities=26%  Similarity=0.379  Sum_probs=89.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .+.|...++||+|+||.||+|.. .+|+.||||++........+.+.+|+.+|++++|||||++++++..++.+||||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            35688899999999999999994 56999999999866555567799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          469 MPNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      +++|+|.+++........ ...++.++
T Consensus       230 ~~gG~L~~~i~~~~l~e~~~~~~~~qi  256 (423)
T 4fie_A          230 LEGGALTDIVTHTRMNEEQIAAVCLAV  256 (423)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhccCCCHHHHHHHHHHH
Confidence            999999999987665544 44455444

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.57  E-value=5e-15  Score=146.06  Aligned_cols=95  Identities=22%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC----EEEEEEe
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ----ELLLIYE  467 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lv~E  467 (495)
                      ++.+.++||+|+||.||+|.+ +|+.||||+++....+ ...+..|+..+.+++|||||+++|++..++    +++||||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E   81 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence            466788999999999999998 6899999999753221 223345666667899999999999998643    6799999


Q ss_pred             cCCCCCHHHHHhcCCCCHHHH
Q 011025          468 YMPNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~~~  488 (495)
                      |+++|+|.++|+.....+...
T Consensus        82 y~~~gsL~~~l~~~~l~~~~~  102 (303)
T 3hmm_A           82 YHEHGSLFDYLNRYTVTVEGM  102 (303)
T ss_dssp             CCTTCBHHHHHHHCCBCHHHH
T ss_pred             CCCCCcHHHHHHhCCCCHHHH
Confidence            999999999999877666533

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.56  E-value=3e-15  Score=147.39  Aligned_cols=104  Identities=21%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++. ..+|+.||||++++.   .....+.+.+|+.++++++|||||++++++..++..+|||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            468999999999999999998 457999999999753   2334678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      ||+++|+|.++|....  .....+.++.|+
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi  141 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEI  141 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999997532  333456666665

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.54  E-value=1.1e-14  Score=142.22  Aligned_cols=101  Identities=25%  Similarity=0.392  Sum_probs=80.0

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELLLIY  466 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~  466 (495)
                      ...++||+|+||.||+|.. .++..||||.+...  +....+.|.+|+.++++++|||||++++++..    .+.++|||
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            5567899999999999984 46889999999643  34556789999999999999999999999864    24579999


Q ss_pred             ecCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      ||+++|+|.++|.... .... ...++.++
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi  138 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQI  138 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999997532 2333 34444444

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.52  E-value=2.4e-14  Score=140.78  Aligned_cols=91  Identities=27%  Similarity=0.428  Sum_probs=76.0

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC---------
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ---------  460 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~---------  460 (495)
                      +|...++||+|+||.||++.. .+|+.||||.++... ....+.+.+|+.++++++|||||++++++...+         
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~   85 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS   85 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence            578889999999999999984 578999999997543 344678999999999999999999999986533         


Q ss_pred             ---EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ---ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ---~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                         ..++||||+++|+|.++|....
T Consensus        86 ~~~~l~ivmE~~~gg~L~~~l~~~~  110 (299)
T 4g31_A           86 PKVYLYIQMQLCRKENLKDWMNGRC  110 (299)
T ss_dssp             -CEEEEEEEECCCSCCHHHHHHTCC
T ss_pred             CCcEEEEEEecCCCCcHHHHHHhcC
Confidence               3689999999999999998654

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.50  E-value=4.5e-14  Score=136.80  Aligned_cols=103  Identities=17%  Similarity=0.359  Sum_probs=80.4

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++. ..+|+.||||.+++..   ......+.+|+.++++++|||||++++++..++..++||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            578999999999999999998 4579999999997542   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-C-CHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS-L-SLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~-~-~~~~~~~l~~~  494 (495)
                      ||+ +|+|.++|.... . ......++.|+
T Consensus        93 Ey~-~g~L~~~l~~~~~l~e~~~~~~~~qi  121 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRDKMSEQEARRFFQQI  121 (275)
T ss_dssp             ECC-CEEHHHHHHHSCSCCHHHHHHHHHHH
T ss_pred             eCC-CCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999 689999986543 2 23355555554

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.50  E-value=2.5e-14  Score=143.75  Aligned_cols=101  Identities=23%  Similarity=0.353  Sum_probs=84.0

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCC-CCccce
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQH-KNLVRL  452 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H-~niv~l  452 (495)
                      ++....+...++|...++||+|+||.||+|...      .++.||||.++... ....++|.+|+.+|.+++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            444555667789999999999999999999843      23589999998653 3456789999999999965 899999


Q ss_pred             EEEEEeC-CEEEEEEecCCCCCHHHHHhcC
Q 011025          453 LGCCLEG-QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       453 ~g~~~~~-~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+|... ++++|||||+++|+|.++|+..
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~  163 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSK  163 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHT
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhc
Confidence            9999764 5689999999999999999754

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.49  E-value=2.5e-14  Score=142.40  Aligned_cols=99  Identities=23%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      +.|...++||+|+||.||++.. .+|+.||||+++....     +.+|+.++++++|||||++++++..++..+|||||+
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  132 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL  132 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            4677788999999999999984 5699999999975321     247999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC-CC-HHHHHHHHHh
Q 011025          470 PNKSLDVHLFGLS-LS-LSIKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~-~~-~~~~~~l~~~  494 (495)
                      ++|+|.++|+... .. .....++.|+
T Consensus       133 ~gg~L~~~l~~~~~l~e~~~~~~~~qi  159 (336)
T 4g3f_A          133 EGGSLGQLIKQMGCLPEDRALYYLGQA  159 (336)
T ss_dssp             TTCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999997532 22 3345555554

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.46  E-value=1.4e-14  Score=142.30  Aligned_cols=104  Identities=23%  Similarity=0.298  Sum_probs=79.4

Q ss_pred             CCcccccccccCCceeEEeeee----cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||++..    ..++.||||.+++..  ......+.+|+.++.+++|||||++++++..++..+|
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            4688899999999999999973    246789999997542  2334578899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          465 IYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      ||||+++|+|.++|....  .......++.|+
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi  135 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAEL  135 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999999997533  233355555554

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.45  E-value=1.5e-13  Score=147.10  Aligned_cols=104  Identities=24%  Similarity=0.372  Sum_probs=89.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+|+.||+|.+........+.+.+|+.+|..++|||||++++++...+.++|||||+
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence            5788999999999999999984 579999999998766666778999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCC---HHHHHHHHHh
Q 011025          470 PNKSLDVHLFGLSLS---LSIKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~---~~~~~~l~~~  494 (495)
                      ++|+|.++|......   .....++.|+
T Consensus       237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi  264 (573)
T 3uto_A          237 SGGELFEKVADEHNKMSEDEAVEYMRQV  264 (573)
T ss_dssp             CCCBHHHHHTCTTSCEEHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            999999999754432   2355555554

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.39  E-value=5.2e-13  Score=136.36  Aligned_cols=103  Identities=13%  Similarity=0.310  Sum_probs=82.9

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe------CCE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE------GQE  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~  461 (495)
                      ++|...++||+|+||.||++. ..+|+.||||+++..  .....+.+.+|+.+|+.++|||||++++++..      .+.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            568889999999999999998 457999999999754  23446778999999999999999999998764      256


Q ss_pred             EEEEEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      .+|||||++ |+|.++|....  .....+.++.|+
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qi  167 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQL  167 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             EEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHH
Confidence            899999995 78999997543  223355566555

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.37  E-value=3.3e-12  Score=126.67  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             CCCChHHHHHhcCC----------cccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCC
Q 011025          379 PLFPLRLALEATNH----------FSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHK  447 (495)
Q Consensus       379 ~~~~~~~l~~~t~~----------~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~  447 (495)
                      ..++.+++..+++.          |...++||+|+||.||+|... +|+.||||.+.....+..+.+.+|+.++.+++||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            34566666665543          556678999999999999964 7999999999876666678899999999999999


Q ss_pred             CccceEEEEEeCCEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          448 NLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       448 niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ||+++++++...+..++||||+++|+|.+++......+.
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~  141 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEE  141 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHH
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHH
Confidence            999999999999999999999999999999987665554

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=127.10  Aligned_cols=92  Identities=25%  Similarity=0.436  Sum_probs=83.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+++.||+|.+...+....+.|.+|+.++.+++||||+++++++..++..++|+||+
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence            5678889999999999999995 468999999998777777889999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++|+|.+++....
T Consensus        90 ~~~~L~~~l~~~~  102 (310)
T 3s95_A           90 KGGTLRGIIKSMD  102 (310)
T ss_dssp             TTCBHHHHHHHCC
T ss_pred             CCCcHHHHHHhcc
Confidence            9999999998643

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.35  E-value=7.5e-13  Score=131.04  Aligned_cols=101  Identities=45%  Similarity=0.763  Sum_probs=90.3

Q ss_pred             ChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          382 PLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       382 ~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      +..++...+++|...+.||+|+||.||+|...+++.||||.+.....+..+.|.+|+.++..++||||+++++++...+.
T Consensus        30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  109 (321)
T 2qkw_B           30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE  109 (321)
T ss_dssp             CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC
T ss_pred             cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe
Confidence            34445567889999999999999999999987899999999987766677889999999999999999999999998899


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+++|+|.+++....
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~~  130 (321)
T 2qkw_B          110 MILIYKYMENGNLKRHLYGSD  130 (321)
T ss_dssp             CEEEEECCTTCBTGGGSSSSC
T ss_pred             EEEEEEcCCCCcHHHHHhccC
Confidence            999999999999999997643

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.34  E-value=3.4e-12  Score=124.53  Aligned_cols=104  Identities=11%  Similarity=0.033  Sum_probs=87.0

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++... .++.||||.+....   .+..+.|.+|+.++.+++||||+++++++...+..++||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            56888999999999999999954 58999999997542   344578999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      ||+++++|.+++........+...+.++
T Consensus       111 e~~~g~~L~~~l~~~~~~~~~~~i~~ql  138 (286)
T 3uqc_A          111 EWIRGGSLQEVADTSPSPVGAIRAMQSL  138 (286)
T ss_dssp             ECCCEEEHHHHHTTCCCHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHhcCCChHHHHHHHHHH
Confidence            9999999999997654444444444443

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.33  E-value=1.9e-12  Score=128.33  Aligned_cols=107  Identities=44%  Similarity=0.707  Sum_probs=92.7

Q ss_pred             CCCCCCChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCCh-hhHHHHHHHHHHHHcCCCCCccceEE
Q 011025          376 QEFPLFPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG-QGLQEFKNEVNLIAKLQHKNLVRLLG  454 (495)
Q Consensus       376 ~~~~~~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g  454 (495)
                      .....++..++....++|...++||+|+||.||++...+|+.||||++..... .....|.+|+.++.+++||||+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            34556788999999999999999999999999999987899999999975432 22346899999999999999999999


Q ss_pred             EEEeCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          455 CCLEGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       455 ~~~~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++..++..++|+||+++|+|.+++....
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~  122 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERP  122 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhcc
Confidence            9999889999999999999999998654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.33  E-value=6.1e-12  Score=123.26  Aligned_cols=97  Identities=24%  Similarity=0.423  Sum_probs=85.5

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++. ..+++.||||.+........+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            4578888999999999999998 457899999999765555567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCHH
Q 011025          469 MPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~~~~  486 (495)
                      +++|+|.+++........
T Consensus        99 ~~~~~L~~~~~~~~~~~~  116 (297)
T 3fxz_A           99 LAGGSLTDVVTETCMDEG  116 (297)
T ss_dssp             CTTCBHHHHHHHSCCCHH
T ss_pred             CCCCCHHHHHhhcCCCHH
Confidence            999999999987654444

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.32  E-value=3.8e-12  Score=128.36  Aligned_cols=104  Identities=24%  Similarity=0.367  Sum_probs=85.5

Q ss_pred             hcCCcccccccccCCceeEEeeee----cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ..+.|...++||+|+||.||++..    ..++.||||.+.+..  ....+.+|+.++..+ +|||||++++++...+..+
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~   96 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV   96 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence            456799999999999999999973    246789999987543  345688999999998 6999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHHHHHHHHHhC
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL  495 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~L  495 (495)
                      +||||+++|+|.+++..- .....+.++.|++
T Consensus        97 lvmE~~~g~~L~~~~~~l-~~~~~~~~~~qll  127 (361)
T 4f9c_A           97 IAMPYLEHESFLDILNSL-SFQEVREYMLNLF  127 (361)
T ss_dssp             EEEECCCCCCHHHHHTTC-CHHHHHHHHHHHH
T ss_pred             EEEeCCCcccHHHHHcCC-CHHHHHHHHHHHH
Confidence            999999999999999642 3344666666653

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.32  E-value=2.5e-12  Score=130.40  Aligned_cols=94  Identities=28%  Similarity=0.499  Sum_probs=81.5

Q ss_pred             cCCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||+|...    .+..||||.++.. .....++|.+|+.++.+++||||+++++++...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            357888999999999999999853    4678999999754 34556789999999999999999999999998889999


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      ||||+++|+|.++|+....
T Consensus       124 v~e~~~~~sL~~~l~~~~~  142 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDA  142 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTT
T ss_pred             EEeCCCCCcHHHHHHhCCC
Confidence            9999999999999987543

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.29  E-value=1.6e-11  Score=120.31  Aligned_cols=103  Identities=43%  Similarity=0.707  Sum_probs=90.8

Q ss_pred             CCCCCChHHHHHhcCCcccc------cccccCCceeEEeeeecCCcEEEEEEcccC----ChhhHHHHHHHHHHHHcCCC
Q 011025          377 EFPLFPLRLALEATNHFSDE------NKLGQGGFGPVYKGTLADGKAIAVKRLSRT----SGQGLQEFKNEVNLIAKLQH  446 (495)
Q Consensus       377 ~~~~~~~~~l~~~t~~~~~~------~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~----~~~~~~~f~~E~~~l~~l~H  446 (495)
                      ....+...++...+++|...      ++||+|+||.||+|.. +++.||||.+...    .....+.|.+|+.++.+++|
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h   89 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH   89 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence            44567888999999999887      8999999999999987 6889999998643    23446789999999999999


Q ss_pred             CCccceEEEEEeCCEEEEEEecCCCCCHHHHHhc
Q 011025          447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       447 ~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      |||+++++++...+..++|+||+++|+|.+++..
T Consensus        90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  123 (307)
T 2nru_A           90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSC  123 (307)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHT
T ss_pred             CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHh
Confidence            9999999999988899999999999999999974

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.29  E-value=9.9e-12  Score=123.74  Aligned_cols=91  Identities=25%  Similarity=0.400  Sum_probs=81.5

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||++...  +....+.+.+|+.++..++||||+++++++...+..++|+
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            46788899999999999999984 67999999999753  3455678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus        94 e~~~~~~L~~~l~~  107 (328)
T 3fe3_A           94 EYASGGEVFDYLVA  107 (328)
T ss_dssp             CCCTTCBHHHHHHH
T ss_pred             ECCCCCcHHHHHHH
Confidence            99999999999964

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.28  E-value=6e-12  Score=125.01  Aligned_cols=93  Identities=28%  Similarity=0.474  Sum_probs=80.6

Q ss_pred             cCCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||+|...    .+..||||.++.. .....+.|.+|+.++.+++||||+++++++..++..++
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            356788899999999999999863    3456999999864 44556789999999999999999999999988888999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      ||||+++|+|.++++...
T Consensus       128 v~e~~~~~~L~~~l~~~~  145 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHD  145 (325)
T ss_dssp             EEECCTTCBHHHHHHTTT
T ss_pred             EeeCCCCCcHHHHHHhcc
Confidence            999999999999997654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.28  E-value=6.4e-12  Score=134.90  Aligned_cols=104  Identities=26%  Similarity=0.329  Sum_probs=81.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHH---HHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEF---KNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f---~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++++..   .+.....   ..++.++..++|||||++++++...+.++
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            5788899999999999999984 569999999997431   1222233   34467777889999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      |||||+++|+|.++|....  .....+.+++++
T Consensus       269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qI  301 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEI  301 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999997532  333466666665

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.28  E-value=9.4e-12  Score=119.72  Aligned_cols=91  Identities=27%  Similarity=0.490  Sum_probs=81.2

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...++||+|+||.||++...+++.||+|.+.... ...+++.+|+.++.+++||||+++++++...+..++|+||++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            4677889999999999999998788899999998543 234679999999999999999999999998889999999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +|+|.+++....
T Consensus        89 ~~~L~~~l~~~~  100 (269)
T 4hcu_A           89 HGCLSDYLRTQR  100 (269)
T ss_dssp             TCBHHHHHHTTT
T ss_pred             CCcHHHHHHhcC
Confidence            999999997654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.27  E-value=2.5e-12  Score=130.59  Aligned_cols=93  Identities=26%  Similarity=0.471  Sum_probs=81.8

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ..++|...++||+|+||.||+|... +++.||||.++.. .....++|.+|+.++.+++||||++++|++...+..++||
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            3457888899999999999999964 6899999999754 3344567999999999999999999999999888999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.++|+..
T Consensus       192 e~~~~g~L~~~l~~~  206 (377)
T 3cbl_A          192 ELVQGGDFLTFLRTE  206 (377)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             EcCCCCCHHHHHHhc
Confidence            999999999999754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.27  E-value=7.7e-12  Score=126.82  Aligned_cols=89  Identities=29%  Similarity=0.438  Sum_probs=74.7

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCCC
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNK  472 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~G  472 (495)
                      ...++||+|+||.||++.. .+|+.||+|+++.......++|.+|+.++.+++||||+++++++...+..+|||||+++|
T Consensus        92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            3456899999999999984 568999999998776667788999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCC
Q 011025          473 SLDVHLFGLS  482 (495)
Q Consensus       473 sL~~~L~~~~  482 (495)
                      +|.+++....
T Consensus       172 ~L~~~l~~~~  181 (373)
T 2x4f_A          172 ELFDRIIDES  181 (373)
T ss_dssp             EEHHHHHHTG
T ss_pred             cHHHHHHhcC
Confidence            9999997543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.26  E-value=1.5e-11  Score=121.55  Aligned_cols=92  Identities=25%  Similarity=0.388  Sum_probs=77.9

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--------  460 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  460 (495)
                      ++|...++||+|+||.||++... +|+.||||+++... ....+.+.+|+.++.+++||||+++++++....        
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence            46788899999999999999964 78999999997543 345678999999999999999999999986543        


Q ss_pred             -------------------------------------------------EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 -------------------------------------------------ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 -------------------------------------------------~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                                                                       ..++||||+++|+|.+++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~  156 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC  156 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc
Confidence                                                             2799999999999999998654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.25  E-value=5.8e-12  Score=122.93  Aligned_cols=93  Identities=33%  Similarity=0.595  Sum_probs=81.3

Q ss_pred             cCCcccccccccCCceeEEeeee-----cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  462 (495)
                      .++|...++||+|+||.||++.+     .+++.||||.+........+.|.+|+.++.+++||||+++++++...  ...
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            35678889999999999999984     35789999999877777778899999999999999999999998653  458


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++|+|.+++....
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~  108 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHK  108 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCG
T ss_pred             EEEEEeCCCCCHHHHHHhcc
Confidence            99999999999999997654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.25  E-value=1.7e-11  Score=125.00  Aligned_cols=93  Identities=23%  Similarity=0.353  Sum_probs=83.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .+|+.||+|.+..........+.+|+.++.+++||||+++++++......++||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            35788899999999999999985 46889999999876666667899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++|+|.+++....
T Consensus       130 ~~gg~L~~~l~~~~  143 (387)
T 1kob_A          130 LSGGELFDRIAAED  143 (387)
T ss_dssp             CCCCBHHHHTTCTT
T ss_pred             CCCCcHHHHHHhhc
Confidence            99999999998654

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.25  E-value=1.9e-11  Score=123.38  Aligned_cols=92  Identities=22%  Similarity=0.307  Sum_probs=81.0

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .+.|...++||+|+||.||++.. .+|+.||+|.++....      ...+.+.+|+.++.+++||||+++++++......
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            45788899999999999999985 4689999999975432      1357899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.++|...
T Consensus        91 ~lv~e~~~gg~L~~~l~~~  109 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQK  109 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTC
T ss_pred             EEEEEcCCCCcHHHHHHhc
Confidence            9999999999999999754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.25  E-value=6.1e-12  Score=130.21  Aligned_cols=98  Identities=20%  Similarity=0.245  Sum_probs=83.2

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      ..+....++|...++||+|+||.||++... +++.||||++++..   ......+.+|+.++..++||||+++++++...
T Consensus        67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~  146 (437)
T 4aw2_A           67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD  146 (437)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred             hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence            344456678999999999999999999964 57899999997532   12233488999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHhcC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      +..+|||||+++|+|.++|...
T Consensus       147 ~~~~lV~Ey~~gg~L~~~l~~~  168 (437)
T 4aw2_A          147 NNLYLVMDYYVGGDLLTLLSKF  168 (437)
T ss_dssp             SEEEEEECCCTTCBHHHHHHTT
T ss_pred             CEEEEEEecCCCCcHHHHHHHc
Confidence            9999999999999999999863

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.25  E-value=8.9e-12  Score=129.72  Aligned_cols=93  Identities=30%  Similarity=0.410  Sum_probs=82.1

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +...++|...++||+|+||.||+|...++..||||.++... ...++|.+|+.++.+++||||+++++++. .+..++||
T Consensus       184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~  261 (454)
T 1qcf_A          184 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIIT  261 (454)
T ss_dssp             BCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             eechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEE
Confidence            44567788899999999999999998888899999998643 35678999999999999999999999986 66789999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.++|+..
T Consensus       262 e~~~~g~L~~~l~~~  276 (454)
T 1qcf_A          262 EFMAKGSLLDFLKSD  276 (454)
T ss_dssp             CCCTTCBHHHHHHSH
T ss_pred             eecCCCcHHHHHHhc
Confidence            999999999999853

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.24  E-value=9.9e-12  Score=120.71  Aligned_cols=93  Identities=29%  Similarity=0.455  Sum_probs=82.0

Q ss_pred             cCCcccccccccCCceeEEeeeec-CC-------cEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DG-------KAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g-------~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .++|...++||+|+||.||++... .+       ..|++|.+........+.|.+|+.++.+++||||+++++++..++.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            356788899999999999999843 23       4799999987666677889999999999999999999999999889


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+++|+|.+++....
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~  107 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNK  107 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTG
T ss_pred             CEEEEECCCCCCHHHHHHhCC
Confidence            999999999999999998654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.24  E-value=2.4e-11  Score=119.81  Aligned_cols=94  Identities=28%  Similarity=0.454  Sum_probs=83.0

Q ss_pred             HhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ...++|...++||+|+||.||++.. .|+.||||.+....  ....++|.+|+.++.+++||||+++++++...+..++|
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV  112 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence            3456788899999999999999987 68899999997543  44567899999999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus       113 ~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A          113 TEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             EECCTTCBHHHHHHSTT
T ss_pred             EecCCCCcHHHHHhhcC
Confidence            99999999999998654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.24  E-value=7.2e-12  Score=121.38  Aligned_cols=91  Identities=30%  Similarity=0.462  Sum_probs=78.3

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..++|...++||+|+||.||++...++..||||.++... ...+++.+|+.++.+++||||+++++++...+..++|+||
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  100 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY  100 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence            345788889999999999999998888899999998543 2346799999999999999999999999988899999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus       101 ~~~~~L~~~l~~  112 (283)
T 3gen_A          101 MANGCLLNYLRE  112 (283)
T ss_dssp             CTTCBHHHHHHC
T ss_pred             cCCCcHHHHHHH
Confidence            999999999976

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.24  E-value=6.9e-12  Score=128.76  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      .+....++|...++||+|+||.||++.. .+++.||+|++++..   ....+.+.+|+.++..++||||+++++++...+
T Consensus        63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~  142 (410)
T 3v8s_A           63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR  142 (410)
T ss_dssp             HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred             hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence            3444567899999999999999999985 458899999997421   122345889999999999999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHHH
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      ..++||||+++|+|.++++.......+
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~  169 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNYDVPEKW  169 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHCCCCHHH
T ss_pred             EEEEEEeCCCCCcHHHHHHcCCCCHHH
Confidence            999999999999999999876655553

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.24  E-value=3.3e-11  Score=119.45  Aligned_cols=92  Identities=18%  Similarity=0.298  Sum_probs=81.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .+++.+|+|.+.... .....+.+|+.++..++||||+++++++...+..++|+||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            35788899999999999999985 468899999997543 3456789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      +++|+|.+++....
T Consensus        83 ~~g~~L~~~l~~~~   96 (321)
T 1tki_A           83 ISGLDIFERINTSA   96 (321)
T ss_dssp             CCCCBHHHHHTSSS
T ss_pred             CCCCCHHHHHHhcC
Confidence            99999999997654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.23  E-value=8.9e-12  Score=119.54  Aligned_cols=91  Identities=27%  Similarity=0.395  Sum_probs=80.3

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|.. .++.||||.+...  +....+.|.+|+.++.+++||||+++++++...  +..++|+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            4678889999999999999997 5889999999754  345567899999999999999999999999876  6789999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        89 e~~~~~~L~~~l~~~~  104 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGT  104 (271)
T ss_dssp             ECCTTCBHHHHHHSCS
T ss_pred             cccCCCcHHHHHhhcc
Confidence            9999999999998754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.23  E-value=1.3e-11  Score=124.89  Aligned_cols=93  Identities=27%  Similarity=0.488  Sum_probs=80.7

Q ss_pred             cCCcccccccccCCceeEEeeee--------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEG  459 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~--------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  459 (495)
                      .++|...+.||+|+||.||++..        .++..||||.++.. .....+.+.+|+.++.++ +||||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            46788899999999999999974        23457999999765 344567899999999999 899999999999988


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +..++|+||+++|+|.++|....
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~  182 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARR  182 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTC
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhC
Confidence            99999999999999999998643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.23  E-value=1.3e-11  Score=118.59  Aligned_cols=91  Identities=29%  Similarity=0.413  Sum_probs=81.1

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...+.||+|+||.||++...++..||||.++... ...+++.+|+.++.+++||||+++++++...+..++|+||+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            45678889999999999999998888899999997543 23467999999999999999999999998888999999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        86 ~~~~L~~~l~~~   97 (268)
T 3sxs_A           86 SNGCLLNYLRSH   97 (268)
T ss_dssp             TTCBHHHHHHHH
T ss_pred             CCCcHHHHHHHc
Confidence            999999999764

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.22  E-value=2.8e-11  Score=120.22  Aligned_cols=91  Identities=22%  Similarity=0.333  Sum_probs=80.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      +.|...+.||+|+||.||++.. .+|+.||||.+.....      ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4578889999999999999985 4689999999975322      24678999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+++|+|.+++...
T Consensus        91 lv~e~~~~~~L~~~l~~~  108 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK  108 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS
T ss_pred             EEEEcCCCCCHHHHHHhc
Confidence            999999999999999754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.22  E-value=1e-11  Score=124.53  Aligned_cols=102  Identities=24%  Similarity=0.371  Sum_probs=85.2

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccce
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRL  452 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l  452 (495)
                      ++........++|...++||+|+||.||++..      .+++.||||+++... ....+.|.+|+.++.++ +||||+++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            34455566778899999999999999999973      345789999998643 34467899999999999 89999999


Q ss_pred             EEEEEeCC-EEEEEEecCCCCCHHHHHhcCC
Q 011025          453 LGCCLEGQ-ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       453 ~g~~~~~~-~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++++...+ ..++|+||+++|+|.++|+...
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~  122 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  122 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTT
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhcc
Confidence            99988754 4899999999999999998754

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.22  E-value=2.1e-11  Score=126.79  Aligned_cols=91  Identities=32%  Similarity=0.495  Sum_probs=79.5

Q ss_pred             hcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-EEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-ELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~E  467 (495)
                      ..++|...++||+|+||.||+|.. .|+.||||.++...  ..+.|.+|+.++.+++||||+++++++...+ ..++|||
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e  267 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE  267 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence            345678889999999999999997 47899999998543  4578999999999999999999999988765 7899999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.++|+...
T Consensus       268 ~~~~g~L~~~l~~~~  282 (450)
T 1k9a_A          268 YMAKGSLVDYLRSRG  282 (450)
T ss_dssp             CCTTCBHHHHHHHHC
T ss_pred             ecCCCcHHHHHHhcC
Confidence            999999999998643

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.22  E-value=1.6e-11  Score=129.29  Aligned_cols=91  Identities=31%  Similarity=0.525  Sum_probs=81.2

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..++|...++||+|+||.||+|... .+..||||.++... ...++|.+|+.++.+++||||+++++++...+..++|||
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            4556888899999999999999965 48899999997543 346789999999999999999999999998889999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.++|+.
T Consensus       297 ~~~~g~L~~~l~~  309 (495)
T 1opk_A          297 FMTYGNLLDYLRE  309 (495)
T ss_dssp             CCTTCBHHHHHHH
T ss_pred             ccCCCCHHHHHHh
Confidence            9999999999975

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.22  E-value=1.9e-11  Score=122.18  Aligned_cols=91  Identities=25%  Similarity=0.287  Sum_probs=80.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||+|.+++.   .......+.+|+.++..++||||+++++++...+..++||
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            5688889999999999999985 46899999999753   2334677899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        85 E~~~gg~L~~~l~~~   99 (337)
T 1o6l_A           85 EYANGGELFFHLSRE   99 (337)
T ss_dssp             ECCTTCBHHHHHHHH
T ss_pred             eCCCCCcHHHHHHhc
Confidence            999999999999753

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.22  E-value=4.6e-11  Score=117.59  Aligned_cols=91  Identities=23%  Similarity=0.353  Sum_probs=79.4

Q ss_pred             CCccc-ccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSD-ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~-~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +.|.. .++||+|+||.||++. ..+++.||||++........+.+.+|+.++.++ +||||+++++++...+..++|+|
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            34555 4689999999999998 457899999999876556678899999999985 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++|+|.+++...
T Consensus        92 ~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           92 KMRGGSILSHIHKR  105 (316)
T ss_dssp             CCTTCBHHHHHHHH
T ss_pred             cCCCCcHHHHHhcc
Confidence            99999999999753

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.21  E-value=3.1e-11  Score=117.92  Aligned_cols=92  Identities=24%  Similarity=0.370  Sum_probs=80.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++.. .++..||+|.+...   .....+.|.+|+.++.+++||||+++++++..++..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            35788899999999999999984 46889999998543   234467899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      |||+++|+|.+++...
T Consensus        90 ~e~~~g~~L~~~l~~~  105 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESH  105 (294)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHhc
Confidence            9999999999999754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.21  E-value=1.7e-11  Score=123.14  Aligned_cols=90  Identities=22%  Similarity=0.386  Sum_probs=78.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      +.|...++||+|+||.||++.. .+|+.||||++...     .....+.+.+|+.++..++||||+++++++...+..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            4688889999999999999984 56899999998632     12246789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhc
Q 011025          465 IYEYMPNKSLDVHLFG  480 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~  480 (495)
                      ||||+++|+|.+++..
T Consensus       104 v~e~~~g~~L~~~l~~  119 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVK  119 (351)
T ss_dssp             EEECCSSCBHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHH
Confidence            9999999999988854

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.21  E-value=3e-11  Score=121.97  Aligned_cols=93  Identities=24%  Similarity=0.396  Sum_probs=81.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++.. .+|+.||+|.+...  +....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45788899999999999999985 46899999999753  3445678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus       108 e~~~gg~L~~~l~~~~  123 (362)
T 2bdw_A          108 DLVTGGELFEDIVARE  123 (362)
T ss_dssp             CCCCSCBHHHHHTTCS
T ss_pred             ecCCCCCHHHHHHHcC
Confidence            9999999999997543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.21  E-value=3.4e-11  Score=122.51  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=81.6

Q ss_pred             cCCcccccccccC--CceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQG--GFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G--~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|  +||.||++.. .+|+.||||++...  .....+.+.+|+.++..++||||+++++++..++..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4578889999999  9999999995 46899999999754  34456778999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||+++|+|.+++...
T Consensus       104 v~e~~~~~~L~~~l~~~  120 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTH  120 (389)
T ss_dssp             EEECCTTCBHHHHHHHT
T ss_pred             EEEccCCCCHHHHHhhh
Confidence            99999999999999753

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.21  E-value=3.2e-11  Score=119.47  Aligned_cols=95  Identities=23%  Similarity=0.298  Sum_probs=79.7

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC----EEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ----ELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lv  465 (495)
                      .++|...++||+|+||.||+|.. .++.||||+++... .....+..|+.++.+++||||+++++++....    ..++|
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEE-CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            45788899999999999999987 48899999997543 33455677999999999999999999988743    47999


Q ss_pred             EecCCCCCHHHHHhcCCCCHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +||+++|+|.++++.....+.
T Consensus       101 ~e~~~~g~L~~~l~~~~~~~~  121 (322)
T 3soc_A          101 TAFHEKGSLSDFLKANVVSWN  121 (322)
T ss_dssp             EECCTTCBHHHHHHHCCBCHH
T ss_pred             EecCCCCCHHHHHHhcCCCHH
Confidence            999999999999987765555

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.21  E-value=1.2e-11  Score=128.74  Aligned_cols=91  Identities=33%  Similarity=0.492  Sum_probs=79.9

Q ss_pred             HhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ...++|...++||+|+||.||+|...++..||||.++... ...++|.+|+.++.+++||||+++++++.. +..++|||
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e  258 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  258 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence            3456788889999999999999998777889999998643 345789999999999999999999999865 67899999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.++|..
T Consensus       259 ~~~~gsL~~~l~~  271 (452)
T 1fmk_A          259 YMSKGSLLDFLKG  271 (452)
T ss_dssp             CCTTCBHHHHHSH
T ss_pred             hhcCCCHHHHHHh
Confidence            9999999999974

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.21  E-value=3.4e-11  Score=118.91  Aligned_cols=92  Identities=29%  Similarity=0.374  Sum_probs=79.5

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--EEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--ELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  466 (495)
                      ++|...++||+|+||.||++... +++.||||+++... ....+.+.+|+.++.+++||||+++++++....  ..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            46788899999999999999954 58999999997543 344678899999999999999999999988754  779999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        89 e~~~~~~L~~~l~~~~  104 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPS  104 (319)
T ss_dssp             ECCTTCBHHHHHHSGG
T ss_pred             eCCCCCCHHHHHHHhc
Confidence            9999999999998643

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=126.86  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      +.....++|...++||+|+||.||++.. .+|+.||||++++..   ....+.+.+|..++..++||||+++++++...+
T Consensus        55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~  134 (412)
T 2vd5_A           55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN  134 (412)
T ss_dssp             HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred             hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence            3344567899999999999999999995 468999999997532   123345889999999999999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhc
Q 011025          461 ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..++||||+++|+|.++|..
T Consensus       135 ~~~lVmE~~~gg~L~~~l~~  154 (412)
T 2vd5_A          135 YLYLVMEYYVGGDLLTLLSK  154 (412)
T ss_dssp             EEEEEECCCCSCBHHHHHHH
T ss_pred             EEEEEEcCCCCCcHHHHHHh
Confidence            99999999999999999975

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.20  E-value=2.4e-11  Score=117.30  Aligned_cols=92  Identities=21%  Similarity=0.371  Sum_probs=81.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .++..|++|.+........+.+.+|+.++.+++||||+++++++...+..++|+||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence            34678889999999999999985 45779999999876556678899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++++|.+++...
T Consensus        88 ~~~~~L~~~~~~~  100 (277)
T 3f3z_A           88 CTGGELFERVVHK  100 (277)
T ss_dssp             CCSCBHHHHHHHH
T ss_pred             cCCCcHHHHHHHc
Confidence            9999999988653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.20  E-value=3.7e-11  Score=115.46  Aligned_cols=96  Identities=30%  Similarity=0.525  Sum_probs=79.0

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++.. .+..||||.++...    .+..+.+.+|+.++..++||||+++++++..++..++|
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            35788889999999999999997 58899999997542    23357899999999999999999999999988889999


Q ss_pred             EecCCCCCHHHHHhcCCCCHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +||+++|+|.+++........
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~  105 (271)
T 3dtc_A           85 MEFARGGPLNRVLSGKRIPPD  105 (271)
T ss_dssp             EECCTTEEHHHHHTSSCCCHH
T ss_pred             EEcCCCCCHHHHhhcCCCCHH
Confidence            999999999999987665554

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.20  E-value=2.6e-11  Score=116.19  Aligned_cols=91  Identities=27%  Similarity=0.455  Sum_probs=81.1

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...+.||+|+||.||++...+++.||+|.+..... ..+++.+|+.++.+++||||+++++++..++..++|+||++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            46778899999999999999987888999999986432 34689999999999999999999999998889999999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +|+|.+++....
T Consensus        87 ~~~L~~~~~~~~   98 (267)
T 3t9t_A           87 HGCLSDYLRTQR   98 (267)
T ss_dssp             TCBHHHHHHHTT
T ss_pred             CCcHHHHHhhCc
Confidence            999999998654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.20  E-value=2.8e-11  Score=118.25  Aligned_cols=92  Identities=26%  Similarity=0.509  Sum_probs=79.4

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..+.|...+.||+|+||.||++... +++.|++|.+........+.+.+|+.++..++||||+++++++...+..++|+|
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            3467888999999999999999964 588999999987666677889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.+++..
T Consensus        97 ~~~~~~l~~~~~~  109 (302)
T 2j7t_A           97 FCPGGAVDAIMLE  109 (302)
T ss_dssp             CCTTEEHHHHHHH
T ss_pred             eCCCCcHHHHHHh
Confidence            9999999999875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.20  E-value=4.3e-11  Score=119.16  Aligned_cols=94  Identities=30%  Similarity=0.546  Sum_probs=82.3

Q ss_pred             HhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      ...++|...+.||+|+||.||++...      +++.||||.++.. .....+.|.+|+.++.+++||||+++++++...+
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~  123 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK  123 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence            35578889999999999999999863      3478999999864 3445678999999999999999999999999888


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++|+||+++|+|.++|...
T Consensus       124 ~~~lv~e~~~~~~L~~~l~~~  144 (343)
T 1luf_A          124 PMCLLFEYMAYGDLNEFLRSM  144 (343)
T ss_dssp             SCEEEEECCTTCBHHHHHHHT
T ss_pred             ceEEEEecCCCCcHHHHHHHh
Confidence            999999999999999999763

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.19  E-value=3.5e-11  Score=119.30  Aligned_cols=91  Identities=27%  Similarity=0.471  Sum_probs=80.4

Q ss_pred             CCcccccccccCCceeEEeeee-----cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      ++|...++||+|+||.||++.+     ..++.||||++........+.+.+|+.++.+++||||+++++++..  ....+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5678889999999999999984     3578999999987777777889999999999999999999999874  45689


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +|+||+++|+|.+++...
T Consensus       103 lv~e~~~~~~L~~~l~~~  120 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRH  120 (327)
T ss_dssp             EEEECCTTCBHHHHHHHH
T ss_pred             EEEeecCCCCHHHHHHhc
Confidence            999999999999999753

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.19  E-value=6.2e-11  Score=119.52  Aligned_cols=90  Identities=22%  Similarity=0.300  Sum_probs=79.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .+++.||||.+..... ..+.+.+|+.++..++||||+++++++..++..++|+||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence            45788899999999999999995 4789999999975432 235688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus        98 ~~~~~L~~~l~~  109 (361)
T 3uc3_A           98 ASGGELYERICN  109 (361)
T ss_dssp             CCSCBHHHHHHH
T ss_pred             CCCCCHHHHHHh
Confidence            999999999964

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.19  E-value=3.4e-11  Score=119.35  Aligned_cols=91  Identities=22%  Similarity=0.339  Sum_probs=80.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||+|.+++..   ....+.+.+|+.++..++||||+++++++...+..++||
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            5688889999999999999985 468999999997532   234677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.++|...
T Consensus        86 e~~~gg~L~~~l~~~  100 (318)
T 1fot_A           86 DYIEGGELFSLLRKS  100 (318)
T ss_dssp             CCCCSCBHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHc
Confidence            999999999999754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.19  E-value=2.3e-11  Score=120.67  Aligned_cols=91  Identities=24%  Similarity=0.310  Sum_probs=77.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .+++.||||.+.... ....+.+.+|+.++..++||||+++++++..++..++|+||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            5788899999999999999985 478999999996443 23346789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        87 ~~~~~L~~~l~~~   99 (323)
T 3tki_A           87 CSGGELFDRIEPD   99 (323)
T ss_dssp             CTTEEGGGGSBTT
T ss_pred             CCCCcHHHHHhhc
Confidence            9999999999765

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.19  E-value=2.6e-11  Score=120.91  Aligned_cols=94  Identities=26%  Similarity=0.358  Sum_probs=81.8

Q ss_pred             HHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-----ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC
Q 011025          386 ALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-----SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG  459 (495)
Q Consensus       386 l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  459 (495)
                      +....++|...++||+|+||.||++.. .++..||+|.+...     .....+.+.+|+.++.+++||||+++++++...
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            345566789999999999999999985 46889999998643     344567899999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHh
Q 011025          460 QELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      +..++|+||+++|+|.+++.
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~  120 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLN  120 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEE
T ss_pred             CeEEEEEeCCCCCcHHHHHH
Confidence            99999999999999999996

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.19  E-value=1.4e-11  Score=131.05  Aligned_cols=91  Identities=33%  Similarity=0.492  Sum_probs=79.9

Q ss_pred             HhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ...++|...++||+|+||.||+|...++..||||.++... ...++|.+|+.+|.+++||||+++++++.. +..+||||
T Consensus       264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e  341 (535)
T 2h8h_A          264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  341 (535)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence            3456788889999999999999998777889999998643 345789999999999999999999999865 67899999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.++|+.
T Consensus       342 ~~~~gsL~~~l~~  354 (535)
T 2h8h_A          342 YMSKGSLLDFLKG  354 (535)
T ss_dssp             CCTTEEHHHHHSH
T ss_pred             hhcCCcHHHHHhh
Confidence            9999999999974

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.19  E-value=2.2e-11  Score=123.13  Aligned_cols=92  Identities=30%  Similarity=0.484  Sum_probs=80.2

Q ss_pred             cCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...++||+|+||.||+|...      .+..||||.++.. ..+....+.+|+.++.+++||||+++++++......
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            456888899999999999999842      4668999999754 445567899999999999999999999999988889


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++||||+++|+|.+++...
T Consensus       150 ~lv~e~~~~g~L~~~l~~~  168 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRET  168 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHhh
Confidence            9999999999999999753

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.18  E-value=4.3e-11  Score=118.61  Aligned_cols=93  Identities=33%  Similarity=0.587  Sum_probs=80.1

Q ss_pred             cCCcccccccccCCceeEEeeee-----cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--EE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--EL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~  462 (495)
                      .++|...++||+|+||.||++.+     .+++.||||.+........+.|.+|+.++.+++||||+++++++...+  ..
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            34677889999999999999984     358899999998776667788999999999999999999999986543  67


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++|+|.+++....
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~  139 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHK  139 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHhcc
Confidence            99999999999999998654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.18  E-value=4.3e-11  Score=120.12  Aligned_cols=92  Identities=23%  Similarity=0.351  Sum_probs=74.4

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..++|...++||+|+||.||++... +++.||||.++...  ..+.+.+|+.++.+++||||+++++++..++..++|+|
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            3467888999999999999999964 57899999997542  34578899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.+++....
T Consensus       129 ~~~~~~L~~~l~~~~  143 (349)
T 2w4o_A          129 LVTGGELFDRIVEKG  143 (349)
T ss_dssp             CCCSCBHHHHHTTCS
T ss_pred             eCCCCCHHHHHHhcC
Confidence            999999999997643

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.18  E-value=1.8e-11  Score=120.18  Aligned_cols=94  Identities=32%  Similarity=0.478  Sum_probs=81.6

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      ..++|...+.||+|+||.||++..      .++..||||.++.. .....+.+.+|+.++.+++||||+++++++...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            356788889999999999999974      23578999999754 34556789999999999999999999999998889


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+++|+|.+++....
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~  121 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESR  121 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTT
T ss_pred             eEEEEeecCCCCHHHHHHHHh
Confidence            999999999999999998643

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.18  E-value=1.1e-10  Score=113.58  Aligned_cols=90  Identities=30%  Similarity=0.436  Sum_probs=78.0

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      .+....+||+|+||.||+|.. .++..||||.+........+.+.+|+.++..++||||+++++++...+..++|+||++
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            344556899999999999994 5688999999987666667889999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcC
Q 011025          471 NKSLDVHLFGL  481 (495)
Q Consensus       471 ~GsL~~~L~~~  481 (495)
                      +|+|.+++...
T Consensus       103 ~~~L~~~l~~~  113 (295)
T 2clq_A          103 GGSLSALLRSK  113 (295)
T ss_dssp             EEEHHHHHHHT
T ss_pred             CCCHHHHHHhh
Confidence            99999999764

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.18  E-value=6.1e-11  Score=115.22  Aligned_cols=90  Identities=18%  Similarity=0.355  Sum_probs=79.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .++..||+|.+.... ....+.+.+|+.++.+++||||+++++++...+..++|+||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            4678889999999999999985 468899999997543 34567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhc
Q 011025          469 MPNKSLDVHLFG  480 (495)
Q Consensus       469 ~~~GsL~~~L~~  480 (495)
                      +++|+|.+++..
T Consensus       102 ~~~~~L~~~l~~  113 (285)
T 3is5_A          102 CEGGELLERIVS  113 (285)
T ss_dssp             CSCCBHHHHHHH
T ss_pred             CCCCcHHHHHHh
Confidence            999999999853

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.17  E-value=4e-11  Score=117.15  Aligned_cols=91  Identities=31%  Similarity=0.535  Sum_probs=76.0

Q ss_pred             CCcccccccccCCceeEEeeee-----cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--CEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--QEL  462 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  462 (495)
                      +.|...++||+|+||.||++.+     .+++.||||.+... .....+.+.+|+.++.+++||||+++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4577889999999999999983     36889999999754 334567899999999999999999999999875  568


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.+++...
T Consensus       101 ~lv~e~~~~~~L~~~l~~~  119 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKN  119 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHhc
Confidence            9999999999999999543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.17  E-value=4.3e-11  Score=118.91  Aligned_cols=92  Identities=28%  Similarity=0.429  Sum_probs=74.5

Q ss_pred             cCCcccccccccCCceeEEeeee----cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .++|...++||+|+||.||++..    .+++.||+|.+++..    ......+.+|+.++.+++||||+++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            35788899999999999999985    468899999997542    2345668899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++||||+++|+|.+++...
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~  115 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLERE  115 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHhC
Confidence            99999999999999999753

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.17  E-value=6.2e-11  Score=116.12  Aligned_cols=90  Identities=21%  Similarity=0.331  Sum_probs=77.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+|+.||+|.++.......+.+.+|+.++.+++||||+++++++...+..++|+||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence            4678889999999999999985 468999999998655445567999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhc
Q 011025          470 PNKSLDVHLFG  480 (495)
Q Consensus       470 ~~GsL~~~L~~  480 (495)
                      ++|+|.+++..
T Consensus        89 ~~~~L~~~l~~   99 (304)
T 2jam_A           89 SGGELFDRILE   99 (304)
T ss_dssp             CSCBHHHHHHH
T ss_pred             CCccHHHHHHH
Confidence            99999999864

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.17  E-value=1.6e-10  Score=114.14  Aligned_cols=95  Identities=31%  Similarity=0.516  Sum_probs=80.3

Q ss_pred             CcccccccccCCceeEEeeee-----cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-----ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-----~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      .|...++||+|+||.||++.+     .+++.||||+++.. ..+..+.|.+|+.++.+++||||+++++++..  ....+
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence            347789999999999988764     25789999999864 34556789999999999999999999999987  46789


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHH
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +|+||+++|+|.+++........
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~  134 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRHSIGLA  134 (318)
T ss_dssp             EEECCCTTCBHHHHGGGSCCCHH
T ss_pred             EEEecccCCcHHHHHhhCCCCHH
Confidence            99999999999999987665554

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.17  E-value=8.2e-11  Score=113.67  Aligned_cols=91  Identities=32%  Similarity=0.430  Sum_probs=80.4

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++... +++.||||.++..  ......++.+|+..+..+ +||||+++++++..++..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            356888899999999999999954 7899999999753  234567889999999999 999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++|+|.+++..
T Consensus        90 ~e~~~~~~L~~~l~~  104 (289)
T 1x8b_A           90 NEYCNGGSLADAISE  104 (289)
T ss_dssp             EECCTTCBHHHHHHH
T ss_pred             EEecCCCcHHHHHHh
Confidence            999999999999975

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.17  E-value=4.4e-11  Score=121.66  Aligned_cols=91  Identities=21%  Similarity=0.352  Sum_probs=80.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+++.||+|.+....   ......+.+|+.++..++||||+++++++...+..++|+
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            5688889999999999999984 468899999997432   234678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        95 e~~~gg~L~~~l~~~  109 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQN  109 (384)
T ss_dssp             CCCTTEEHHHHHHTT
T ss_pred             ecCCCCcHHHHHHhc
Confidence            999999999999864

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.17  E-value=1.4e-10  Score=113.52  Aligned_cols=97  Identities=23%  Similarity=0.401  Sum_probs=84.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .+.|...++||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+.++.+++||||+++++++...+..++|+|
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            35688889999999999999984 568899999997543 3456789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCCCCHH
Q 011025          468 YMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~~  486 (495)
                      |+++++|.+++........
T Consensus       101 ~~~~~~L~~~~~~~~~~~~  119 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDET  119 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHH
T ss_pred             eCCCCcHHHHHhcCCCCHH
Confidence            9999999999987654444

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.17  E-value=4.8e-11  Score=120.05  Aligned_cols=92  Identities=23%  Similarity=0.392  Sum_probs=79.6

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ..++|...++||+|+||.||++.. .+|+.||||++++.   .....+.+.+|..++..+ +||||+++++++...+..+
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            346899999999999999999985 46899999999753   233456788999999988 7999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +||||+++|+|.+++..
T Consensus       101 lv~E~~~gg~L~~~l~~  117 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQK  117 (353)
T ss_dssp             EEEECCCSCBHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHH
Confidence            99999999999999965

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.16  E-value=9.2e-11  Score=117.55  Aligned_cols=90  Identities=20%  Similarity=0.354  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||.||++.. .+++.||+|.+++.   .....+.+.+|..++.++ +||||+++++++...+..++|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            4678889999999999999995 46889999999754   234456788999999988 899999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      |||+++|+|.+++..
T Consensus        89 ~e~~~gg~L~~~l~~  103 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQR  103 (345)
T ss_dssp             ECCCCSCBHHHHHHH
T ss_pred             EeCCCCCcHHHHHHH
Confidence            999999999999975

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.16  E-value=7.5e-11  Score=116.62  Aligned_cols=93  Identities=22%  Similarity=0.313  Sum_probs=80.9

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||.+.....      ...+++.+|+.++.+++||||+++++++...+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            34678889999999999999985 4689999999975421      1367899999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++|+|.+++....
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~  110 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKE  110 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCS
T ss_pred             EEEEEcCCCCcHHHHHHhcC
Confidence            99999999999999997643

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.16  E-value=5e-11  Score=116.47  Aligned_cols=97  Identities=22%  Similarity=0.327  Sum_probs=77.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh--------------------------hhHHHHHHHHHHHH
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG--------------------------QGLQEFKNEVNLIA  442 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~--------------------------~~~~~f~~E~~~l~  442 (495)
                      .++|...++||+|+||.||++.. .+++.||||.+.....                          ...+.+.+|+.++.
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            46788899999999999999984 5688999999964321                          12356899999999


Q ss_pred             cCCCCCccceEEEEEe--CCEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          443 KLQHKNLVRLLGCCLE--GQELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       443 ~l~H~niv~l~g~~~~--~~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +++||||+++++++..  .+..++||||+++|+|.+++........
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~  137 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSED  137 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHH
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHH
Confidence            9999999999999986  5678999999999999988766554444

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.16  E-value=6.8e-11  Score=127.70  Aligned_cols=91  Identities=26%  Similarity=0.471  Sum_probs=76.2

Q ss_pred             Cccccc-ccccCCceeEEeeeec---CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          392 HFSDEN-KLGQGGFGPVYKGTLA---DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       392 ~~~~~~-~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++...+ +||+|+||.||+|...   ++..||||.++... ....++|.+|+.++.+++|||||++++++.. +..++||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence            344444 7999999999999853   45679999998653 3457889999999999999999999999875 5689999


Q ss_pred             ecCCCCCHHHHHhcCCC
Q 011025          467 EYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~  483 (495)
                      ||+++|+|.++|.....
T Consensus       415 E~~~~g~L~~~l~~~~~  431 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKRE  431 (613)
T ss_dssp             ECCTTCBHHHHHTTCTT
T ss_pred             EeCCCCcHHHHHhhccC
Confidence            99999999999976543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.16  E-value=2e-11  Score=120.61  Aligned_cols=95  Identities=32%  Similarity=0.460  Sum_probs=82.1

Q ss_pred             HHHhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          386 ALEATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       386 l~~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      .+...++|...+.||+|+||.||+|...      .++.||||.+... .......|.+|+.++.+++||||+++++++..
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~   99 (322)
T 1p4o_A           20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   99 (322)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence            3445678899999999999999999743      3678999999754 33456679999999999999999999999988


Q ss_pred             CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      .+..++|+||+++|+|.+++..
T Consensus       100 ~~~~~lv~e~~~~~~L~~~l~~  121 (322)
T 1p4o_A          100 GQPTLVIMELMTRGDLKSYLRS  121 (322)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHH
T ss_pred             CCccEEEEEeCCCCcHHHHHHH
Confidence            8889999999999999999975

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.16  E-value=4.1e-11  Score=117.63  Aligned_cols=94  Identities=31%  Similarity=0.411  Sum_probs=81.7

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...+.||+|+||.||++..      .+++.||||.++... ....+.+.+|+.++.++ +||||+++++++..++
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            456788899999999999999973      346789999998553 34567899999999999 9999999999999888


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++|+||+++|+|.+++....
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~  122 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKR  122 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTT
T ss_pred             CcEEEEecCCCCCHHHHHHhcc
Confidence            9999999999999999998654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.16  E-value=7.3e-11  Score=118.58  Aligned_cols=91  Identities=22%  Similarity=0.274  Sum_probs=81.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .++..||+|.+... .....+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            5688889999999999999995 46899999999754 344567899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus       113 ~~~~~L~~~l~~~  125 (360)
T 3eqc_A          113 MDGGSLDQVLKKA  125 (360)
T ss_dssp             CTTCBHHHHHHHH
T ss_pred             CCCCCHHHHHHHc
Confidence            9999999999753

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.15  E-value=2.4e-11  Score=120.58  Aligned_cols=94  Identities=33%  Similarity=0.463  Sum_probs=80.9

Q ss_pred             HHhcCCcccccccccCCceeEEeeeec-CC-----cEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLA-DG-----KAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~-~g-----~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      +...++|...+.||+|+||.||++... .+     ..||||.+.... ....+.+.+|+.++..+ +||||+++++++..
T Consensus        42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  121 (333)
T 2i1m_A           42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH  121 (333)
T ss_dssp             BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence            345678899999999999999999843 22     479999997543 34567899999999999 89999999999998


Q ss_pred             CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ++..++|+||+++|+|.++|..
T Consensus       122 ~~~~~lv~e~~~~g~L~~~l~~  143 (333)
T 2i1m_A          122 GGPVLVITEYCCYGDLLNFLRR  143 (333)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHH
T ss_pred             CCceEEEEecCCCCcHHHHHHH
Confidence            8899999999999999999974

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.15  E-value=4.4e-11  Score=124.08  Aligned_cols=92  Identities=22%  Similarity=0.336  Sum_probs=79.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++. ..+|+.+|+|.+....  ....+.+.+|+.++..++||||+++++++...+..++||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            4568889999999999999998 4578999999997542  344677999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        90 E~~~gg~L~~~i~~~  104 (444)
T 3soa_A           90 DLVTGGELFEDIVAR  104 (444)
T ss_dssp             CCCBCCBHHHHHHHC
T ss_pred             EeCCCCCHHHHHHHc
Confidence            999999999998754

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.15  E-value=6.7e-11  Score=118.83  Aligned_cols=90  Identities=23%  Similarity=0.346  Sum_probs=79.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+|+.||||.+.+..   ....+.+.+|+.++..++||||+++++++...+..++||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            5788889999999999999985 468999999997532   234678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.++|..
T Consensus       121 e~~~gg~L~~~l~~  134 (350)
T 1rdq_E          121 EYVAGGEMFSHLRR  134 (350)
T ss_dssp             ECCTTCBHHHHHHH
T ss_pred             cCCCCCcHHHHHHH
Confidence            99999999999975

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.15  E-value=6.8e-11  Score=114.15  Aligned_cols=92  Identities=24%  Similarity=0.405  Sum_probs=80.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+|+.||||.+....   ....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL   90 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence            5688889999999999999984 578999999997432   223578999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        91 e~~~~~~L~~~l~~~~  106 (278)
T 3cok_A           91 EMCHNGEMNRYLKNRV  106 (278)
T ss_dssp             ECCTTEEHHHHHHTCS
T ss_pred             ecCCCCcHHHHHhhcc
Confidence            9999999999998653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.15  E-value=1.6e-10  Score=113.44  Aligned_cols=90  Identities=24%  Similarity=0.465  Sum_probs=78.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.++..   .....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  111 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL  111 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence            5688899999999999999984 57899999999753   3445678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus       112 e~~~~~~L~~~l~~  125 (310)
T 2wqm_A          112 ELADAGDLSRMIKH  125 (310)
T ss_dssp             ECCCSCBHHHHHHH
T ss_pred             ecCCCCCHHHHHHH
Confidence            99999999999963

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.15  E-value=1.8e-10  Score=112.26  Aligned_cols=93  Identities=25%  Similarity=0.380  Sum_probs=76.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHc--CCCCCccceEEEEEeC----CEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK--LQHKNLVRLLGCCLEG----QELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~----~~~~  463 (495)
                      .++|...++||+|+||.||+|.. +++.||||++...   ....+..|.+++..  ++||||+++++++...    ...+
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence            45788899999999999999987 7899999999743   34556677777666  7999999999987652    4579


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHH
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      +|+||+++|+|.++++.......
T Consensus        83 lv~e~~~~g~L~~~l~~~~~~~~  105 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLTTLDTV  105 (301)
T ss_dssp             EEECCCTTCBHHHHHTTCCBCHH
T ss_pred             EehhhccCCCHHHHHhhcccCHH
Confidence            99999999999999987665554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.15  E-value=7.2e-11  Score=118.35  Aligned_cols=93  Identities=19%  Similarity=0.339  Sum_probs=79.8

Q ss_pred             HhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  462 (495)
                      ...++|...++||+|+||.||++.. .+|+.||||.+++..   ....+.+..|..++..+ +||||+++++++...+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            4567899999999999999999995 468899999997532   23456788999999876 999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011025          463 LLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~  480 (495)
                      ++||||+++|+|.++|..
T Consensus        94 ~lv~E~~~gg~L~~~l~~  111 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQS  111 (345)
T ss_dssp             EEEEECCTTCBHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHH
Confidence            999999999999999975

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.15  E-value=5.9e-11  Score=118.04  Aligned_cols=94  Identities=27%  Similarity=0.492  Sum_probs=80.6

Q ss_pred             hcCCcccccccccCCceeEEeeee--------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~--------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      ..++|...+.||+|+||.||++..        .++..||||+++.. .....+.+.+|+.++.++ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            456788899999999999999985        24678999999754 345567899999999999 89999999999998


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .+..++|+||+++|+|.+++....
T Consensus       113 ~~~~~lv~e~~~~~~L~~~l~~~~  136 (334)
T 2pvf_A          113 DGPLYVIVEYASKGNLREYLRARR  136 (334)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHTTS
T ss_pred             CCceEEEEECCCCCcHHHHHHHhc
Confidence            889999999999999999998653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.15  E-value=8.8e-11  Score=115.63  Aligned_cols=92  Identities=27%  Similarity=0.388  Sum_probs=79.1

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  463 (495)
                      ..++|...++||+|+||.||++.. .+++.||||.+........+.+.+|+.++..++||||+++++++..    ....+
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            346788899999999999999984 5789999999987666777889999999999999999999999873    34679


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +|+||+++|+|.+++..
T Consensus       107 lv~e~~~~~~L~~~l~~  123 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIER  123 (317)
T ss_dssp             EEEECCTTCBHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHH
Confidence            99999999999999975

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.15  E-value=7.4e-11  Score=116.30  Aligned_cols=92  Identities=27%  Similarity=0.451  Sum_probs=78.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++...+|+.||+|++....  ....+.+.+|+.++.+++||||+++++++..++..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            46788899999999999999998789999999997542  2335678999999999999999999999998899999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |++ |+|.+++....
T Consensus       100 ~~~-~~l~~~~~~~~  113 (311)
T 3niz_A          100 FME-KDLKKVLDENK  113 (311)
T ss_dssp             CCS-EEHHHHHHTCT
T ss_pred             CCC-CCHHHHHHhcc
Confidence            997 58888887654

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.15  E-value=1.3e-10  Score=112.86  Aligned_cols=91  Identities=26%  Similarity=0.498  Sum_probs=76.6

Q ss_pred             CCccccc-ccccCCceeEEeeeec---CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDEN-KLGQGGFGPVYKGTLA---DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~-~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      +++...+ +||+|+||.||+|...   ++..||||.++.. .....+.+.+|+.++.+++||||+++++++ ..+..++|
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            3444454 8999999999999853   5778999999864 345577899999999999999999999998 56678999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus        88 ~e~~~~~~L~~~l~~~~  104 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKR  104 (287)
T ss_dssp             EECCTTEEHHHHHTTCT
T ss_pred             EEeCCCCCHHHHHHhCC
Confidence            99999999999997544

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.15  E-value=1.4e-10  Score=115.16  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=74.3

Q ss_pred             ccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecCCCCC
Q 011025          396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYMPNKS  473 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~~Gs  473 (495)
                      .++||+|+||.||++.. .+++.||||.+..   .....+.+|+.++..++ ||||+++++++......++||||+++|+
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK---RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEG---GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEECh---hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            47899999999999995 4689999999974   34467889999999996 9999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 011025          474 LDVHLFGLS  482 (495)
Q Consensus       474 L~~~L~~~~  482 (495)
                      |.+++....
T Consensus        93 L~~~l~~~~  101 (325)
T 3kn6_A           93 LFERIKKKK  101 (325)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhcC
Confidence            999997643

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.14  E-value=1e-10  Score=113.13  Aligned_cols=92  Identities=24%  Similarity=0.400  Sum_probs=80.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++.. .+++.||+|.+...  +....+.+.+|+.++.+++||||+++++++..++..++|+
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            46788899999999999999985 46889999999643  3445678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        85 e~~~~~~l~~~~~~~   99 (284)
T 3kk8_A           85 DLVTGGELFEDIVAR   99 (284)
T ss_dssp             CCCCSCBHHHHHHHH
T ss_pred             ecCCCCCHHHHHHhc
Confidence            999999999888643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.14  E-value=7.3e-11  Score=117.49  Aligned_cols=92  Identities=29%  Similarity=0.520  Sum_probs=78.8

Q ss_pred             CCcccccccccCCceeEEeeeecC-----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD-----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~-----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|....     +..||||.++.. .......|.+|+.++.+++||||+++++++...+..++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            467778899999999999998532     235999999754 34456689999999999999999999999998889999


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      |+||+++|+|.+++....
T Consensus       124 v~e~~~~~~L~~~l~~~~  141 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKD  141 (333)
T ss_dssp             EEECCTTEEHHHHHHHTT
T ss_pred             EEeCCCCCcHHHHHHhCC
Confidence            999999999999997643

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.14  E-value=5.5e-11  Score=119.33  Aligned_cols=89  Identities=30%  Similarity=0.504  Sum_probs=77.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +.|...+.||+|+||.||++.. .+++.||||.+....   ....+.+.+|+.++.+++||||+++++++..++..++|+
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4577889999999999999984 578999999997432   234567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||++ |+|.+++..
T Consensus       134 e~~~-g~l~~~l~~  146 (348)
T 1u5q_A          134 EYCL-GSASDLLEV  146 (348)
T ss_dssp             ECCS-EEHHHHHHH
T ss_pred             ecCC-CCHHHHHHH
Confidence            9997 788888854

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.14  E-value=8.4e-11  Score=119.40  Aligned_cols=94  Identities=27%  Similarity=0.461  Sum_probs=81.0

Q ss_pred             hcCCcccccccccCCceeEEeeee--------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~--------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      ..++|...++||+|+||.||++..        ..+..||||+++.. .....+.+.+|+.++.++ +||||+++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            456788899999999999999984        12357999999754 345567899999999999 99999999999999


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++..++|+||+++|+|.+++....
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l~~~~  170 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYLQARR  170 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             CCceEEEEEecCCCcHHHHHHHhc
Confidence            889999999999999999997643

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.14  E-value=9.3e-11  Score=113.39  Aligned_cols=90  Identities=26%  Similarity=0.375  Sum_probs=79.1

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...++||+|+||.||++... +++.||||.++....      ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45778899999999999999954 689999999874321      23678999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +|+||+++++|.+++..
T Consensus        85 lv~e~~~~~~L~~~l~~  101 (283)
T 3bhy_A           85 LILELVSGGELFDFLAE  101 (283)
T ss_dssp             EEEECCCSCBHHHHHHH
T ss_pred             EEEeecCCCcHHHHHHh
Confidence            99999999999999964

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.14  E-value=7.7e-11  Score=120.31  Aligned_cols=92  Identities=29%  Similarity=0.374  Sum_probs=79.4

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC--EEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ--ELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  466 (495)
                      ++|...++||+|+||.||+|... +|+.||||+++... ....+.+.+|+.++.+++||||+++++++...+  ..++||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            46788899999999999999954 58999999997543 344678899999999999999999999988754  679999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus        89 e~~~~g~L~~~l~~~~  104 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPS  104 (396)
T ss_dssp             CCCTTEEHHHHTTSGG
T ss_pred             ecCCCCCHHHHHHhhh
Confidence            9999999999998643

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.13  E-value=7.2e-11  Score=123.45  Aligned_cols=92  Identities=22%  Similarity=0.374  Sum_probs=80.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...+.||+|+||.||+|.. .+|+.||||++....   ....+.+.+|+.++..++||||+++++++...+..++|
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            35788889999999999999985 479999999997432   23356799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++|+|.+++...
T Consensus        95 ~E~~~gg~L~~~l~~~  110 (476)
T 2y94_A           95 MEYVSGGELFDYICKN  110 (476)
T ss_dssp             EECCSSEEHHHHTTSS
T ss_pred             EeCCCCCcHHHHHHhc
Confidence            9999999999999754

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.13  E-value=5e-11  Score=117.77  Aligned_cols=93  Identities=25%  Similarity=0.480  Sum_probs=71.8

Q ss_pred             HhcCCcccccccccCCceeEEeeeecC-Cc---EEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLAD-GK---AIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~~-g~---~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      ...++|...+.||+|+||.||++.... ++   .||||.++..  .....+.|.+|+.++.+++||||+++++++.....
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            345678999999999999999998543 32   7999999754  34557789999999999999999999999987655


Q ss_pred             E------EEEEecCCCCCHHHHHhc
Q 011025          462 L------LLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       462 ~------~lv~Ey~~~GsL~~~L~~  480 (495)
                      .      ++|+||+++|+|.+++..
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~  124 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLA  124 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHH
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHh
Confidence            4      999999999999999964

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.13  E-value=4e-11  Score=118.03  Aligned_cols=92  Identities=22%  Similarity=0.261  Sum_probs=77.8

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC----E
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ----E  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~  461 (495)
                      .++|...++||+|+||.||++. ..+++.||||.++...   ......|.+|+.++.+++||||+++++++....    .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            3578889999999999999999 4678999999997542   334567999999999999999999999876543    3


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++||||+++|+|.+++...
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~  110 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTE  110 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHhc
Confidence            49999999999999999743

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.13  E-value=8.2e-11  Score=116.22  Aligned_cols=90  Identities=29%  Similarity=0.487  Sum_probs=65.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++.. .+|+.||+|.++... ....+.+.+|+.++.+++||||+++++++..++..++|+|
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            35688889999999999999984 468999999997543 2335678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |++ |+|.+++..
T Consensus        84 ~~~-~~L~~~l~~   95 (317)
T 2pmi_A           84 FMD-NDLKKYMDS   95 (317)
T ss_dssp             CCC-CBHHHHHHH
T ss_pred             ecC-CCHHHHHHh
Confidence            998 699999864

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.13  E-value=1.6e-10  Score=113.36  Aligned_cols=91  Identities=24%  Similarity=0.385  Sum_probs=79.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.+....  ....+.+.+|+.++.+++||||+++++++...+..++|+|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            5688889999999999999995 458999999986543  3345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++++|.+++...
T Consensus        83 ~~~~~~l~~~~~~~   96 (311)
T 4agu_A           83 YCDHTVLHELDRYQ   96 (311)
T ss_dssp             CCSEEHHHHHHHTS
T ss_pred             eCCCchHHHHHhhh
Confidence            99999999998754

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.13  E-value=7.9e-11  Score=116.73  Aligned_cols=93  Identities=30%  Similarity=0.475  Sum_probs=78.4

Q ss_pred             cCCcccccccccCCceeEEeeee------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...+.||+|+||.||+|..      .++..||||.+... ......++.+|+.++.+++||||+++++++...+..
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            45788899999999999999984      24678999999754 345567899999999999999999999999988889


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++|+|.+++....
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~  128 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETR  128 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTS
T ss_pred             EEEEecCCCCcHHHHHHhhc
Confidence            99999999999999998643

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.13  E-value=5.7e-11  Score=121.34  Aligned_cols=91  Identities=19%  Similarity=0.334  Sum_probs=77.5

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||++.. .+++.+|||++++..   ....+.+.+|..++.++ +||||+++++++...+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            45788899999999999999985 458899999997542   23345688999999887 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhc
Q 011025          465 IYEYMPNKSLDVHLFG  480 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~  480 (495)
                      ||||+++|+|.+++..
T Consensus       131 V~E~~~gg~L~~~l~~  146 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQR  146 (396)
T ss_dssp             EEECCTTCBHHHHHHH
T ss_pred             EEEcCCCCcHHHHHHH
Confidence            9999999999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.13  E-value=6.1e-11  Score=118.27  Aligned_cols=94  Identities=28%  Similarity=0.424  Sum_probs=79.4

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...+.||+|+||.||++..      ..+..||||.+... .....+.+.+|+.++.++ +||||+++++++...+
T Consensus        43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  122 (344)
T 1rjb_A           43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  122 (344)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence            456788899999999999999984      23568999999754 234457899999999999 8999999999999889


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++|+||+++|+|.++|....
T Consensus       123 ~~~lv~e~~~~g~L~~~l~~~~  144 (344)
T 1rjb_A          123 PIYLIFEYCCYGDLLNYLRSKR  144 (344)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT
T ss_pred             ccEEEEecCCCCcHHHHHhhcc
Confidence            9999999999999999998654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.12  E-value=1.1e-10  Score=113.24  Aligned_cols=92  Identities=34%  Similarity=0.581  Sum_probs=76.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhh-------HHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQG-------LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~-------~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+.......       .+.|.+|+.++.+++||||+++++++.... 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence            36788899999999999999985 578999999996432211       267999999999999999999999885444 


Q ss_pred             EEEEEecCCCCCHHHHHhcCCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~  483 (495)
                       ++|+||+++|+|.+++.....
T Consensus        97 -~lv~e~~~~~~L~~~l~~~~~  117 (287)
T 4f0f_A           97 -RMVMEFVPCGDLYHRLLDKAH  117 (287)
T ss_dssp             -EEEEECCTTCBHHHHHHCTTS
T ss_pred             -eEEEEecCCCCHHHHHhcccC
Confidence             799999999999999976543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.12  E-value=1e-10  Score=113.95  Aligned_cols=91  Identities=32%  Similarity=0.468  Sum_probs=78.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-----------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-----------  458 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-----------  458 (495)
                      ++|...+.||+|+||.||++.. .+++.||||.++.. ....+.+.+|+.++.+++||||+++++++..           
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            4678889999999999999984 57899999999643 3456789999999999999999999998865           


Q ss_pred             --CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          459 --GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       459 --~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                        .+..++|+||+++|+|.+++....
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~  110 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSEN  110 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSC
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccc
Confidence              346799999999999999998654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.12  E-value=1.2e-10  Score=113.13  Aligned_cols=90  Identities=23%  Similarity=0.404  Sum_probs=78.6

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++....|+.||+|.+....  ....+.+.+|+.++.+++||||+++++++...+..++|+||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            4678889999999999999998779999999997543  22346789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++ +|.+++...
T Consensus        82 ~~~-~l~~~~~~~   93 (288)
T 1ob3_A           82 LDQ-DLKKLLDVC   93 (288)
T ss_dssp             CSE-EHHHHHHTS
T ss_pred             cCC-CHHHHHHhc
Confidence            975 999999764

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.12  E-value=1.2e-10  Score=112.38  Aligned_cols=90  Identities=34%  Similarity=0.474  Sum_probs=78.4

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...+.||+|+||.||+|...++..||||.+.... ...+.|.+|+.++.+++||||+++++++. .+..++|+||+
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   89 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM   89 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecC
Confidence            45688889999999999999998778899999997543 34578999999999999999999999876 55689999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        90 ~~~~L~~~l~~~  101 (279)
T 1qpc_A           90 ENGSLVDFLKTP  101 (279)
T ss_dssp             TTCBHHHHTTSH
T ss_pred             CCCCHHHHHhcC
Confidence            999999999753

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.12  E-value=3.6e-10  Score=112.40  Aligned_cols=102  Identities=23%  Similarity=0.416  Sum_probs=84.6

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHc--CCCCCccceEEEEEe
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAK--LQHKNLVRLLGCCLE  458 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~  458 (495)
                      .+........++|...+.||+|+||.||++.. +|+.||||.+..   .....+.+|..++..  ++||||+++++++..
T Consensus        32 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~  107 (342)
T 1b6c_B           32 LPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNK  107 (342)
T ss_dssp             SCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred             CceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc---hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence            34444455567899999999999999999997 689999999974   334678889988887  799999999999987


Q ss_pred             CC----EEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          459 GQ----ELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       459 ~~----~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ..    ..++|+||+++|+|.+++........
T Consensus       108 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~  139 (342)
T 1b6c_B          108 DNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVE  139 (342)
T ss_dssp             CCSSCCCEEEEECCCTTCBHHHHHHHCCBCHH
T ss_pred             cCCccceeEEEEeecCCCcHHHHHhccCccHH
Confidence            65    78999999999999999987655544

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.12  E-value=2.1e-10  Score=110.48  Aligned_cols=92  Identities=23%  Similarity=0.381  Sum_probs=80.5

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...+.||+|+||.||++... +|+.|+||.+....   ....+.+.+|+.++..++||||+++++++..++..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV   89 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence            357888999999999999999854 68999999997432   23456899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++++|.+++...
T Consensus        90 ~e~~~~~~L~~~l~~~  105 (276)
T 2h6d_A           90 MEYVSGGELFDYICKH  105 (276)
T ss_dssp             EECCCSCBHHHHHHHH
T ss_pred             EeccCCCcHHHHHhcc
Confidence            9999999999999653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.12  E-value=3.5e-11  Score=116.71  Aligned_cols=91  Identities=31%  Similarity=0.525  Sum_probs=80.8

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..++|...++||+|+||.||++... .+..||+|.+.... ...+.+.+|+.++.+++||||+++++++...+..++|+|
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            4567888899999999999999964 48899999997543 346789999999999999999999999998889999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.+++..
T Consensus        90 ~~~~~~L~~~~~~  102 (288)
T 3kfa_A           90 FMTYGNLLDYLRE  102 (288)
T ss_dssp             CCTTEEHHHHHHH
T ss_pred             cCCCCcHHHHHHh
Confidence            9999999999975

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.12  E-value=1.2e-10  Score=112.65  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=77.6

Q ss_pred             cCCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...+.||+|+||.||+|...    .+..||+|.++.. .....+.|.+|+.++.+++||||+++++++ ..+..++
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence            457888899999999999999853    2457999999754 344567899999999999999999999987 4567899


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      |+||+++|+|.+++....
T Consensus        93 v~e~~~~~~L~~~l~~~~  110 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRK  110 (281)
T ss_dssp             EEECCTTEEHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHhcC
Confidence            999999999999998654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.12  E-value=1.3e-10  Score=112.12  Aligned_cols=91  Identities=25%  Similarity=0.396  Sum_probs=78.9

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~l  464 (495)
                      .++|...+.||+|+||.||++.. .+++.|++|.+...  +....+.+.+|+.++.+++||||+++++++..  ....++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            35788889999999999999985 46899999999754  34456789999999999999999999998865  567899


Q ss_pred             EEecCCCCCHHHHHhc
Q 011025          465 IYEYMPNKSLDVHLFG  480 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~  480 (495)
                      |+||+++|+|.+++..
T Consensus        85 v~e~~~~~~L~~~l~~  100 (279)
T 2w5a_A           85 VMEYCEGGDLASVITK  100 (279)
T ss_dssp             EEECCTTEEHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHh
Confidence            9999999999999975

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.12  E-value=1.9e-10  Score=112.00  Aligned_cols=89  Identities=25%  Similarity=0.430  Sum_probs=75.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++.. .+++.||||.+....  ......+.+|+.++.+++||||+++++++..++..++|+|
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4678889999999999999985 468999999997542  3345788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++ +|.+++..
T Consensus        82 ~~~~-~l~~~~~~   93 (292)
T 3o0g_A           82 FCDQ-DLKKYFDS   93 (292)
T ss_dssp             CCSE-EHHHHHHH
T ss_pred             cCCC-CHHHHHHh
Confidence            9975 56665543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.11  E-value=2.1e-10  Score=112.64  Aligned_cols=95  Identities=26%  Similarity=0.369  Sum_probs=76.5

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEE------------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCL------------  457 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~------------  457 (495)
                      ++|...++||+|+||.||++... +++.||||.+...+.+..+++.+|+.++.+++||||+++++++.            
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            57888899999999999999964 58999999998777777788999999999999999999998873            


Q ss_pred             --eCCEEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          458 --EGQELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       458 --~~~~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                        .....++|+||++ |+|.+++........
T Consensus        91 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~  120 (320)
T 2i6l_A           91 LTELNSVYIVQEYME-TDLANVLEQGPLLEE  120 (320)
T ss_dssp             CCSCSEEEEEEECCS-EEHHHHHTTCCCCHH
T ss_pred             ccccCceeEEeeccC-CCHHHHhhcCCccHH
Confidence              3467899999997 799999987654444

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.11  E-value=8.4e-11  Score=115.52  Aligned_cols=102  Identities=24%  Similarity=0.371  Sum_probs=84.4

Q ss_pred             CChHHHHHhcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccce
Q 011025          381 FPLRLALEATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRL  452 (495)
Q Consensus       381 ~~~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l  452 (495)
                      ..........++|...+.||+|+||.||++..      .+++.||||.++... ....+.+.+|+.++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34445555677899999999999999999973      346789999997643 34467899999999999 79999999


Q ss_pred             EEEEEeCC-EEEEEEecCCCCCHHHHHhcCC
Q 011025          453 LGCCLEGQ-ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       453 ~g~~~~~~-~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++++...+ ..++|+||+++|+|.+++....
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~  127 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR  127 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence            99987654 5899999999999999998754

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.11  E-value=2.2e-10  Score=120.76  Aligned_cols=91  Identities=21%  Similarity=0.348  Sum_probs=77.0

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh-------------hhHHHHHHHHHHHHcCCCCCccceEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG-------------QGLQEFKNEVNLIAKLQHKNLVRLLGC  455 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~-------------~~~~~f~~E~~~l~~l~H~niv~l~g~  455 (495)
                      .++|...++||+|+||.||++.. .+++.||||.+.....             ...+.+.+|+.++.+++||||++++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            46788899999999999999995 4688999999975321             235679999999999999999999999


Q ss_pred             EEeCCEEEEEEecCCCCCHHHHHhc
Q 011025          456 CLEGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       456 ~~~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      +..+...++|+||+++|+|.+++..
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~  139 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIIN  139 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHH
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHH
Confidence            9999999999999999999998864

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.11  E-value=2.2e-10  Score=111.58  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=79.4

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++... +++.+|+|.+...   .....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            56788899999999999999954 5789999998643   2345678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++++|.+++..
T Consensus        95 e~~~~~~L~~~~~~  108 (294)
T 2rku_A           95 ELCRRRSLLELHKR  108 (294)
T ss_dssp             ECCTTCBHHHHHHH
T ss_pred             ecCCCCCHHHHHHh
Confidence            99999999999865

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.11  E-value=2.3e-10  Score=112.48  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=80.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++.. .+++.||+|.+....   ....+.+.+|+.++.+++||||+++++++..++..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            46789999999999999999985 468899999997542   23357899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      +||+++++|.+++...
T Consensus       113 ~e~~~~~~L~~~l~~~  128 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQ  128 (309)
T ss_dssp             EECCCCEEHHHHHHHH
T ss_pred             EEecCCCCHHHHHHhc
Confidence            9999999999999753

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.11  E-value=1.2e-10  Score=124.01  Aligned_cols=92  Identities=28%  Similarity=0.443  Sum_probs=80.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++.. .+|+.||||.+.+..   ......+.+|+.++..++||||+++++++...+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            45688889999999999999985 468999999997432   23456789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      |||+++|+|.+++...
T Consensus       263 mEy~~gg~L~~~l~~~  278 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHM  278 (576)
T ss_dssp             ECCCCSCBHHHHHHSS
T ss_pred             EEcCCCCcHHHHHHhc
Confidence            9999999999999764

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.11  E-value=8.6e-11  Score=120.94  Aligned_cols=94  Identities=17%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             HhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--------hhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      ...++|...++||+|+||.||++.. .+++.||||.+....        ......+.+|+.++.+++||||+++++++. 
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence            3457899999999999999999984 568899999986431        112235889999999999999999999864 


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .+..++||||+++|+|.+++....
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~  234 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNK  234 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSC
T ss_pred             cCceEEEEEcCCCCcHHHHHhccC
Confidence            566899999999999999987543

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.11  E-value=8.1e-11  Score=115.74  Aligned_cols=87  Identities=30%  Similarity=0.541  Sum_probs=75.6

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...++||+|+||.||++.. .++.||||.+...  ...+.|.+|+.++.+++||||+++++++.  ++.++|+||++
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~   82 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE   82 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence            4677789999999999999987 5789999999743  34578999999999999999999999875  45799999999


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                      +|+|.+++....
T Consensus        83 ~~~L~~~l~~~~   94 (307)
T 2eva_A           83 GGSLYNVLHGAE   94 (307)
T ss_dssp             TCBHHHHHHCSS
T ss_pred             CCCHHHHHhccC
Confidence            999999998654

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.11  E-value=2.2e-10  Score=111.55  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=79.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---------hhhHHHHHHHHHHHHcCC-CCCccceEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---------GQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLE  458 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---------~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~  458 (495)
                      .++|...++||+|+||.||++.. .+|+.||||.++...         ....+.+.+|+.++.+++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            46788899999999999999985 468899999996432         122467889999999995 9999999999999


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcC
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .+..++|+||+++|+|.+++...
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~  118 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEK  118 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHH
T ss_pred             CCeEEEEEeccCCCcHHHHHhcc
Confidence            99999999999999999999753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.11  E-value=4e-11  Score=124.40  Aligned_cols=92  Identities=25%  Similarity=0.273  Sum_probs=71.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...++||+|+||.||++.. .+|+.||||.++..   .......+.+|+.++..++||||+++++++...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            35788899999999999999984 56899999999743   334456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      |||+++|+|.+++...
T Consensus       227 ~e~~~~~~L~~~l~~~  242 (446)
T 4ejn_A          227 MEYANGGELFFHLSRE  242 (446)
T ss_dssp             ECCCSSCBHHHHHHHH
T ss_pred             EeeCCCCcHHHHHHhc
Confidence            9999999999999653

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.10  E-value=1.3e-10  Score=111.75  Aligned_cols=91  Identities=24%  Similarity=0.314  Sum_probs=80.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...+.||+|+||.||++.. .+++.||||.+... .....+.+.+|+.++..++||||+++++++..++..++|+||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence            4678889999999999999985 46899999999743 234467899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        87 ~~~~~L~~~l~~~   99 (276)
T 2yex_A           87 CSGGELFDRIEPD   99 (276)
T ss_dssp             CTTEEGGGGSBTT
T ss_pred             cCCCcHHHHHhhc
Confidence            9999999999754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.10  E-value=1e-10  Score=123.06  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=75.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      +.|...++||+|+||.||++.. .++..||+|.+....  ......+.+|+.++..++||||+++++++......++|+|
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            4578889999999999999985 468899999997542  3345789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.+++..
T Consensus       117 ~~~~g~L~~~~~~  129 (494)
T 3lij_A          117 CYKGGELFDEIIH  129 (494)
T ss_dssp             CCCSCBHHHHHHH
T ss_pred             cCCCCcHHHHHHH
Confidence            9999999998864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.10  E-value=2.3e-10  Score=113.92  Aligned_cols=91  Identities=16%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|+.++..++||||+++++++...+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            35688889999999999999995 45789999998643   334567899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++++|.+++..
T Consensus       120 ~e~~~~~~L~~~~~~  134 (335)
T 2owb_A          120 LELCRRRSLLELHKR  134 (335)
T ss_dssp             ECCCTTCBHHHHHHH
T ss_pred             EecCCCCCHHHHHhc
Confidence            999999999999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.10  E-value=3e-10  Score=110.33  Aligned_cols=89  Identities=27%  Similarity=0.391  Sum_probs=76.2

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~l  464 (495)
                      .|...++||+|+||.||+|.. .++..|++|.+...  +....+.+.+|+.++.+++||||+++++++..    ....++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            466678899999999999985 46789999998743  34556789999999999999999999998865    345799


Q ss_pred             EEecCCCCCHHHHHhc
Q 011025          465 IYEYMPNKSLDVHLFG  480 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~  480 (495)
                      |+||+++|+|.+++..
T Consensus       107 v~e~~~~~~L~~~l~~  122 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKR  122 (290)
T ss_dssp             EEECCCSCBHHHHHHH
T ss_pred             EEEecCCCCHHHHHHH
Confidence            9999999999999975

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.10  E-value=1.7e-10  Score=120.93  Aligned_cols=92  Identities=23%  Similarity=0.345  Sum_probs=80.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++....   ....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            4678889999999999999985 478999999996432   345678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+++|+|.+++....
T Consensus       106 e~~~~~~L~~~~~~~~  121 (484)
T 3nyv_A          106 EVYTGGELFDEIISRK  121 (484)
T ss_dssp             CCCCSCBHHHHHHTCS
T ss_pred             ecCCCCCHHHHHHhcC
Confidence            9999999999987543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.09  E-value=1.3e-10  Score=116.15  Aligned_cols=90  Identities=20%  Similarity=0.340  Sum_probs=77.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+....   .+....+.+|+.++..++||||+++++++..++..++|
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35788899999999999999994 678999999997431   22345789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+ +|+|.+++..
T Consensus        88 ~E~~-~g~l~~~l~~  101 (336)
T 3h4j_B           88 IEYA-GGELFDYIVE  101 (336)
T ss_dssp             ECCC-CEEHHHHHHH
T ss_pred             EECC-CCcHHHHHHH
Confidence            9999 7899998864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.09  E-value=1.6e-10  Score=116.27  Aligned_cols=92  Identities=23%  Similarity=0.279  Sum_probs=79.7

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCC---hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ..++|...++||+|+||.||++... +++.||||++++..   ....+.+.+|..++..+ +||||+++.+++...+..+
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            3467899999999999999999964 57899999997532   23456788999999988 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +||||+++|+|.++|..
T Consensus        98 lv~E~~~gg~L~~~l~~  114 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQ  114 (353)
T ss_dssp             EEEECCCSCBHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHh
Confidence            99999999999999975

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.09  E-value=1.5e-10  Score=114.85  Aligned_cols=92  Identities=32%  Similarity=0.513  Sum_probs=72.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|.. .+++    .|++|.++.. ..+..++|.+|+.++.+++||||+++++++..+. .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            4688889999999999999984 3444    4688888643 3455678999999999999999999999998654 789


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      |+||+++|+|.+++.....
T Consensus        94 v~e~~~~g~L~~~l~~~~~  112 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKD  112 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTT
T ss_pred             EEEecCCCcHHHHHHhcCC
Confidence            9999999999999986543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.09  E-value=2.3e-10  Score=113.37  Aligned_cols=92  Identities=33%  Similarity=0.554  Sum_probs=76.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcE--EEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKA--IAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~--VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...+.||+|+||.||++.. .++..  |+||.++.. .....+.+.+|+.++.++ +||||+++++++...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5678889999999999999985 35654  499998753 334456799999999999 999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      +||+++|+|.+++....
T Consensus       105 ~e~~~~~~L~~~l~~~~  121 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSR  121 (327)
T ss_dssp             ECCCTTCBHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHhcc
Confidence            99999999999998653

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.09  E-value=1.8e-10  Score=113.27  Aligned_cols=90  Identities=26%  Similarity=0.493  Sum_probs=74.1

Q ss_pred             HhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ...++|...+.||+|+||.||++... +|+.||||.+....  ..+++.+|+.++..++||||+++++++...+..++|+
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            34567889999999999999999854 58999999997542  3467899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHh
Q 011025          467 EYMPNKSLDVHLF  479 (495)
Q Consensus       467 Ey~~~GsL~~~L~  479 (495)
                      ||+++|+|.+++.
T Consensus       104 e~~~~~~L~~~~~  116 (314)
T 3com_A          104 EYCGAGSVSDIIR  116 (314)
T ss_dssp             ECCTTEEHHHHHH
T ss_pred             ecCCCCCHHHHHH
Confidence            9999999999996

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.08  E-value=1.9e-10  Score=111.06  Aligned_cols=91  Identities=27%  Similarity=0.430  Sum_probs=79.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      .++|...+.||+|+||.||++.. .++..||||.+....   ......+.+|+.++.+++||||+++++++...+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            45788889999999999999985 457799999996432   22356789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++|+|.+++..
T Consensus        88 ~e~~~~~~l~~~l~~  102 (279)
T 3fdn_A           88 LEYAPLGTVYRELQK  102 (279)
T ss_dssp             ECCCTTEEHHHHHHH
T ss_pred             EecCCCCcHHHHHHh
Confidence            999999999999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.08  E-value=9.7e-11  Score=114.25  Aligned_cols=93  Identities=16%  Similarity=0.266  Sum_probs=65.8

Q ss_pred             HhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ...++|...+.||+|+||.||++.. .+++.||||.+.... ....+++.+|+.++.+++||||+++++++...+..++|
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            3457889999999999999999984 468899999997543 34467789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      +||+++|+|.+++..
T Consensus        92 ~e~~~~~~L~~~l~~  106 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKH  106 (303)
T ss_dssp             EECCTTCBHHHHHHH
T ss_pred             ehhccCCchHHHHHH
Confidence            999999999999963

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.08  E-value=1.7e-10  Score=114.65  Aligned_cols=93  Identities=27%  Similarity=0.436  Sum_probs=77.2

Q ss_pred             HhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh--hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG--QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ...++|...++||+|+||.||++. ..+++.||||+++....  ...+.+.+|+.++.+++||||+++++++...+..++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            345678999999999999999998 45789999999975432  335678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||++ |+|.+++...
T Consensus       111 v~e~~~-~~L~~~~~~~  126 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKN  126 (329)
T ss_dssp             EEECCS-EEHHHHHHHC
T ss_pred             EEecCC-CCHHHHHhhc
Confidence            999997 5999999764

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.08  E-value=2e-10  Score=121.81  Aligned_cols=91  Identities=29%  Similarity=0.481  Sum_probs=80.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||+|++.+..   ....+.+.+|+.++.+++||||+++.+++...+..++||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            5688889999999999999995 468999999997432   234577899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.++|...
T Consensus       265 E~~~gg~L~~~l~~~  279 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNV  279 (543)
T ss_dssp             CCCTTCBHHHHHHTS
T ss_pred             EeccCCCHHHHHHHh
Confidence            999999999999753

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.08  E-value=1.1e-10  Score=118.27  Aligned_cols=92  Identities=32%  Similarity=0.486  Sum_probs=76.2

Q ss_pred             CcccccccccCCceeEEeeeec--CC--cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTLA--DG--KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLLI  465 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~--~g--~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv  465 (495)
                      .|...++||+|+||.||+|...  ++  ..||||.++.. .....++|.+|+.++.+++||||+++++++.. .+..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            3556789999999999999853  22  36899999754 34557889999999999999999999999865 4577999


Q ss_pred             EecCCCCCHHHHHhcCCC
Q 011025          466 YEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~  483 (495)
                      +||+++|+|.+++.....
T Consensus       170 ~e~~~~g~L~~~l~~~~~  187 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETH  187 (373)
T ss_dssp             EECCTTCBHHHHHHCTTC
T ss_pred             EECCCCCCHHHHHhhccc
Confidence            999999999999986543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.08  E-value=1.9e-10  Score=120.69  Aligned_cols=91  Identities=22%  Similarity=0.345  Sum_probs=79.9

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++.. .+++.||||++...  .......+.+|+.++.+++||||+++++++......++|+
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            35688899999999999999985 46899999999643  2344678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus       101 e~~~~~~L~~~~~~  114 (486)
T 3mwu_A          101 ELYTGGELFDEIIK  114 (486)
T ss_dssp             CCCCSCBHHHHHHH
T ss_pred             EcCCCCcHHHHHHh
Confidence            99999999998864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.08  E-value=2.4e-10  Score=111.23  Aligned_cols=92  Identities=28%  Similarity=0.401  Sum_probs=76.1

Q ss_pred             CcccccccccCCceeEEeeee-cCC---cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE-EEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADG---KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL-LLI  465 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g---~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~-~lv  465 (495)
                      .|...++||+|+||.||+|.. .++   ..+|+|.+... .....+.|.+|+.++.+++||||+++++++...+.. ++|
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            345568899999999999984 233   37999999754 345567899999999999999999999999876555 999


Q ss_pred             EecCCCCCHHHHHhcCCC
Q 011025          466 YEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~  483 (495)
                      +||+.+|+|.+++.....
T Consensus       102 ~e~~~~~~L~~~~~~~~~  119 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQR  119 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTC
T ss_pred             EecccCCCHHHHHhcccc
Confidence            999999999999987443

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.08  E-value=5.4e-10  Score=110.75  Aligned_cols=96  Identities=24%  Similarity=0.409  Sum_probs=78.4

Q ss_pred             HHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC--CCCCccceEEEEEeC----C
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL--QHKNLVRLLGCCLEG----Q  460 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~g~~~~~----~  460 (495)
                      ....++|...++||+|+||.||+|.. .++.||||++...   ....+..|.+++..+  +||||+++++++...    .
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~  108 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT  108 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred             cccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence            34456889999999999999999987 4899999999643   234455666666554  899999999999887    7


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ..++||||+++|+|.++++.......
T Consensus       109 ~~~lv~e~~~~g~L~~~l~~~~~~~~  134 (337)
T 3mdy_A          109 QLYLITDYHENGSLYDYLKSTTLDAK  134 (337)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCCBCHH
T ss_pred             ceEEEEeccCCCcHHHHhhccCCCHH
Confidence            88999999999999999987665554

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.07  E-value=1.9e-10  Score=112.17  Aligned_cols=93  Identities=30%  Similarity=0.443  Sum_probs=76.7

Q ss_pred             CCcccccccccCCceeEEeeeecC----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~l  464 (495)
                      .+|...++||+|+||.||+|...+    +..++||.+... .....+.+.+|+.++.+++||||+++++++.. .+..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            457778899999999999998532    236899999754 34556789999999999999999999999765 456799


Q ss_pred             EEecCCCCCHHHHHhcCCC
Q 011025          465 IYEYMPNKSLDVHLFGLSL  483 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~  483 (495)
                      |+||+++|+|.+++.....
T Consensus       105 v~e~~~~~~L~~~l~~~~~  123 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETH  123 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTC
T ss_pred             EEeCCCCCCHHHHHHhccc
Confidence            9999999999999976543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.07  E-value=2e-10  Score=115.33  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=82.5

Q ss_pred             hHHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCC-----------hhhHHHHHHHHHHHHcCCCCCccc
Q 011025          383 LRLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS-----------GQGLQEFKNEVNLIAKLQHKNLVR  451 (495)
Q Consensus       383 ~~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~-----------~~~~~~f~~E~~~l~~l~H~niv~  451 (495)
                      ..++....++|...++||+|+||.||++...+|..||||++....           ....+.+.+|+.++.+++||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            355667788999999999999999999997779999999996422           112478999999999999999999


Q ss_pred             eEEEEEeC-----CEEEEEEecCCCCCHHHHHhcCC
Q 011025          452 LLGCCLEG-----QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       452 l~g~~~~~-----~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++++...     ...++|+||++ |+|.+++....
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~  128 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR  128 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT
T ss_pred             eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc
Confidence            99998652     35799999997 78999887654

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=114.36  Aligned_cols=97  Identities=25%  Similarity=0.439  Sum_probs=82.1

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe---
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE---  458 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~---  458 (495)
                      ..+....++|...+.||+|+||.||+|.. .+++.||||.+.... ...+.+.+|+.++.++ +||||+++++++..   
T Consensus        17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   95 (326)
T 2x7f_A           17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP   95 (326)
T ss_dssp             CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred             hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence            34445677899999999999999999985 578999999997543 3346789999999998 89999999999876   


Q ss_pred             ---CCEEEEEEecCCCCCHHHHHhcC
Q 011025          459 ---GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       459 ---~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                         .+..++|+||+++|+|.+++...
T Consensus        96 ~~~~~~~~lv~e~~~~~~L~~~l~~~  121 (326)
T 2x7f_A           96 PGMDDQLWLVMEFCGAGSVTDLIKNT  121 (326)
T ss_dssp             -CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred             ccccceEEEEEEcCCCCcHHHHHHhc
Confidence               46789999999999999999753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.07  E-value=2.2e-10  Score=115.36  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             HHhcCCcccccccccCCceeEEeee------ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC---CCCccceEEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGT------LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ---HKNLVRLLGCCL  457 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~------~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~  457 (495)
                      ....++|...++||+|+||.||+|.      ...++.||||.++..   ..+++..|+.++..++   |+||+++++++.
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~  137 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL  137 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence            3455778889999999999999994      446889999999754   3457888888888887   999999999999


Q ss_pred             eCCEEEEEEecCCCCCHHHHHhc
Q 011025          458 EGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..+..++||||+++|+|.++|..
T Consensus       138 ~~~~~~lv~e~~~~g~L~~~l~~  160 (365)
T 3e7e_A          138 FQNGSVLVGELYSYGTLLNAINL  160 (365)
T ss_dssp             CSSCEEEEECCCCSCBHHHHHHH
T ss_pred             cCCCcEEEEeccCCCcHHHHHHH
Confidence            99999999999999999999963

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.07  E-value=3.5e-10  Score=109.74  Aligned_cols=91  Identities=22%  Similarity=0.346  Sum_probs=80.4

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++... +++.||||.+...  .....+.+.+|+.++.+++||||+++++++...+..++|+
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            457888999999999999999854 6889999999643  2345678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++++|.+++..
T Consensus       101 e~~~~~~L~~~l~~  114 (287)
T 2wei_A          101 ELYTGGELFDEIIK  114 (287)
T ss_dssp             CCCCSCBHHHHHHH
T ss_pred             EccCCCCHHHHHHh
Confidence            99999999998864

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.06  E-value=1.9e-10  Score=111.37  Aligned_cols=91  Identities=23%  Similarity=0.414  Sum_probs=79.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+++.||||.+....   ....+.+.+|+.++..++||||+++++++...+..++|+
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5688889999999999999985 457899999996432   223567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+++|+|.+++...
T Consensus        94 e~~~~~~L~~~l~~~  108 (284)
T 2vgo_A           94 EFAPRGELYKELQKH  108 (284)
T ss_dssp             CCCTTEEHHHHHHHH
T ss_pred             EeCCCCcHHHHHHhc
Confidence            999999999999753

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.06  E-value=1.9e-10  Score=113.74  Aligned_cols=92  Identities=18%  Similarity=0.302  Sum_probs=74.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+....        ......+.+|+.++.+++||||+++++++....
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            35688899999999999999985 468899999997432        122345889999999999999999999986554


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                       .++|+||+++|+|.+++....
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~  109 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNK  109 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTC
T ss_pred             -eEEEEecCCCCcHHHHHhccC
Confidence             899999999999999997543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.06  E-value=3.9e-10  Score=111.96  Aligned_cols=91  Identities=24%  Similarity=0.438  Sum_probs=78.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.+....  ....+.+.+|+.++.+++||||+++++++...+..++|+|
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            4678889999999999999995 458999999986443  3335678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+++++|.+++...
T Consensus       105 ~~~~~~l~~~~~~~  118 (331)
T 4aaa_A          105 FVDHTILDDLELFP  118 (331)
T ss_dssp             CCSEEHHHHHHHST
T ss_pred             cCCcchHHHHHhhc
Confidence            99999999987643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.05  E-value=2.8e-10  Score=112.90  Aligned_cols=88  Identities=19%  Similarity=0.218  Sum_probs=76.6

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|. ..+++.||||.+.....  .+.+.+|+.++.++ +||||+++++++..++..++||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence            578889999999999999998 45789999999875432  24688999999999 999999999999999999999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      + +|+|.+++...
T Consensus        87 ~-~~~L~~~~~~~   98 (330)
T 2izr_A           87 L-GPSLEDLFDLC   98 (330)
T ss_dssp             C-CCBHHHHHHHT
T ss_pred             C-CCCHHHHHHHc
Confidence            9 99999999853

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.05  E-value=5.4e-10  Score=112.77  Aligned_cols=95  Identities=17%  Similarity=0.260  Sum_probs=80.8

Q ss_pred             HHhcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCCh--------hhHHHHHHHHHHHHcC-CCCCccceEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG--------QGLQEFKNEVNLIAKL-QHKNLVRLLGCC  456 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~--------~~~~~f~~E~~~l~~l-~H~niv~l~g~~  456 (495)
                      ....++|...++||+|+||.||++... +|+.||||+++....        ...+.+.+|+.++.++ +||||+++++++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            444567888899999999999999964 699999999864321        1245688999999999 899999999999


Q ss_pred             EeCCEEEEEEecCCCCCHHHHHhcC
Q 011025          457 LEGQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       457 ~~~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ...+..++||||+++|+|.+++...
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~  194 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEK  194 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHH
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhc
Confidence            9999999999999999999999753

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.05  E-value=2.9e-10  Score=110.57  Aligned_cols=91  Identities=33%  Similarity=0.544  Sum_probs=75.9

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||+|..  ...||||.++..  .....+.|.+|+.++.+++||||++++++. ..+..++|+|
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e   99 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ   99 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEES--SSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred             ccceeeeeEecCCCCeEEEEEEE--cCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence            45788899999999999999985  346999999754  345567899999999999999999999965 4556899999


Q ss_pred             cCCCCCHHHHHhcCCC
Q 011025          468 YMPNKSLDVHLFGLSL  483 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~  483 (495)
                      |+++++|.+++.....
T Consensus       100 ~~~~~~L~~~l~~~~~  115 (289)
T 3og7_A          100 WCEGSSLYHHLHASET  115 (289)
T ss_dssp             CCCEEEHHHHHTTC--
T ss_pred             ecCCCcHHHHHhhccC
Confidence            9999999999975543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.05  E-value=3.2e-10  Score=122.81  Aligned_cols=85  Identities=29%  Similarity=0.425  Sum_probs=72.5

Q ss_pred             cccccCCceeEEeeee---cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTL---ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~---~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||+|.+   ..++.||||+++...  ....++|.+|+.++.+++|||||++++++. .+..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence            4799999999999964   246789999998542  344688999999999999999999999986 4568999999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.++|....
T Consensus       454 g~L~~~l~~~~  464 (635)
T 4fl3_A          454 GPLNKYLQQNR  464 (635)
T ss_dssp             EEHHHHHHHCT
T ss_pred             CCHHHHHhhCC
Confidence            99999997543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.05  E-value=1.8e-10  Score=115.32  Aligned_cols=89  Identities=18%  Similarity=0.331  Sum_probs=75.9

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+++...    .+.+|+.++.++ +||||+++++++..++..++|||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E   96 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE   96 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence            45688889999999999999985 4688999999975432    245688888887 79999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+++|+|.+++....
T Consensus        97 ~~~gg~L~~~i~~~~  111 (342)
T 2qr7_A           97 LMKGGELLDKILRQK  111 (342)
T ss_dssp             CCCSCBHHHHHHTCT
T ss_pred             CCCCCcHHHHHHHcC
Confidence            999999999997643

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.05  E-value=3e-10  Score=111.60  Aligned_cols=95  Identities=29%  Similarity=0.495  Sum_probs=75.1

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeeec----CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      .+....++|...++||+|+||.||+|...    .+..||||.++..  .....+.|.+|+.++.+++||||+++++++..
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            33445667888999999999999999853    3458999999754  34456789999999999999999999999876


Q ss_pred             CC-----EEEEEEecCCCCCHHHHHh
Q 011025          459 GQ-----ELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       459 ~~-----~~~lv~Ey~~~GsL~~~L~  479 (495)
                      .+     ..++|+||+++|+|.+++.
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~  133 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLL  133 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHH
T ss_pred             ccccCCcccEEEEecccCCCHHHHHH
Confidence            54     3499999999999999994

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.05  E-value=3.6e-10  Score=113.41  Aligned_cols=97  Identities=25%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-----CCCccceEEEEE
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-----HKNLVRLLGCCL  457 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-----H~niv~l~g~~~  457 (495)
                      .......++|...++||+|+||.||++.. .+++.||||+++.. ......+..|+.++..++     ||||+++++++.
T Consensus        28 ~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~  106 (360)
T 3llt_A           28 KKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFM  106 (360)
T ss_dssp             CTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEE
T ss_pred             ecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceee
Confidence            33344567899999999999999999985 56889999999743 344567888999999986     999999999999


Q ss_pred             eCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          458 EGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..+..++|+||+ +++|.+++....
T Consensus       107 ~~~~~~lv~e~~-~~~L~~~~~~~~  130 (360)
T 3llt_A          107 YYDHMCLIFEPL-GPSLYEIITRNN  130 (360)
T ss_dssp             ETTEEEEEECCC-CCBHHHHHHHTT
T ss_pred             ECCeeEEEEcCC-CCCHHHHHHhcC
Confidence            999999999999 999999997644

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.05  E-value=3.1e-10  Score=109.77  Aligned_cols=92  Identities=25%  Similarity=0.382  Sum_probs=77.0

Q ss_pred             cCCcccccccccCCceeEEeeeecC----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...+.||+|+||.||+|...+    +..||||.+... .....+.|.+|+.++.+++||||+++++++. .+..++
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE-EEPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC-SSSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCCEE
Confidence            4578888999999999999998532    346999999865 3455678999999999999999999999875 445689


Q ss_pred             EEecCCCCCHHHHHhcCC
Q 011025          465 IYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~  482 (495)
                      |+||+++|+|.+++....
T Consensus        90 v~e~~~~~~L~~~l~~~~  107 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNK  107 (281)
T ss_dssp             EEECCTTCBHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHhcc
Confidence            999999999999997543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.05  E-value=2.2e-10  Score=111.45  Aligned_cols=92  Identities=29%  Similarity=0.428  Sum_probs=75.7

Q ss_pred             cCCccccc-ccccCCceeEEeeee---cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          390 TNHFSDEN-KLGQGGFGPVYKGTL---ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       390 t~~~~~~~-~LG~G~fG~Vykg~~---~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      .++|...+ .||+|+||.||++..   ..++.||||.++...  ....++|.+|+.++..++||||+++++++ ..+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            34566666 899999999999963   346789999997543  33467899999999999999999999998 567789


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        94 lv~e~~~~~~L~~~l~~~~  112 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR  112 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT
T ss_pred             EEEEeCCCCCHHHHHHhCc
Confidence            9999999999999997643

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.05  E-value=3.5e-10  Score=111.40  Aligned_cols=91  Identities=32%  Similarity=0.354  Sum_probs=75.4

Q ss_pred             CCcccccccccCCceeEEeeeec-CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|... +|+.||||++...  .......+..|+..+.++ +||||+++++++..++..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            56888999999999999999964 7899999998643  234445566677666665 9999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      ||+ +|+|.+++....
T Consensus       137 e~~-~~~L~~~~~~~~  151 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWG  151 (311)
T ss_dssp             ECC-CCBHHHHHHHHC
T ss_pred             ecc-CCCHHHHHHhcC
Confidence            999 789999987644

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.04  E-value=1.2e-10  Score=116.34  Aligned_cols=87  Identities=26%  Similarity=0.400  Sum_probs=77.7

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChh-----------------hHHHHHHHHHHHHcCCCCCccce
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQ-----------------GLQEFKNEVNLIAKLQHKNLVRL  452 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~-----------------~~~~f~~E~~~l~~l~H~niv~l  452 (495)
                      .++|...+.||+|+||.||++.. +++.||||.+......                 ..+.|.+|+.++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46788899999999999999998 8999999999743211                 12789999999999999999999


Q ss_pred             EEEEEeCCEEEEEEecCCCCCHHHH
Q 011025          453 LGCCLEGQELLLIYEYMPNKSLDVH  477 (495)
Q Consensus       453 ~g~~~~~~~~~lv~Ey~~~GsL~~~  477 (495)
                      ++++...+..++||||+++|+|.++
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~  133 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKF  133 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHH
Confidence            9999999999999999999999998

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.04  E-value=1.4e-10  Score=117.41  Aligned_cols=92  Identities=24%  Similarity=0.316  Sum_probs=70.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHH-HHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNL-IAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||++.. .+++.+|||++++..   ......+.+|..+ +..++||||+++++++...+..++
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            35788899999999999999995 458899999997542   2334566777776 567899999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ||||+++|+|.++|...
T Consensus       117 v~E~~~gg~L~~~l~~~  133 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRE  133 (373)
T ss_dssp             EEECCCSCBHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHhc
Confidence            99999999999999753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.04  E-value=5.1e-10  Score=110.77  Aligned_cols=87  Identities=18%  Similarity=0.387  Sum_probs=76.8

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEe--CCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLE--GQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++. ..+++.||||.++..   ..+.+.+|+.++.+++ ||||+++++++..  ....++|+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            568888999999999999998 457899999999743   3467899999999997 9999999999987  56789999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++++|.+++..
T Consensus       113 e~~~~~~l~~~~~~  126 (330)
T 3nsz_A          113 EHVNNTDFKQLYQT  126 (330)
T ss_dssp             ECCCCCCHHHHGGG
T ss_pred             eccCchhHHHHHHh
Confidence            99999999999865

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.04  E-value=3.5e-10  Score=117.97  Aligned_cols=104  Identities=21%  Similarity=0.275  Sum_probs=82.1

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...++||+|+||.||++. ..+++.||||++...  .....+.+.+|+.++..++||||+++++++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            4678889999999999999998 456899999999754  344567899999999999999999999998654      4


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      ..++||||+++ +|.+.+...-.......++.++
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~~qi  173 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQMELDHERMSYLLYQM  173 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCC-CHHHHHhhcCCHHHHHHHHHHH
Confidence            67999999975 5777776654344444455544

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.03  E-value=2.3e-10  Score=110.49  Aligned_cols=89  Identities=33%  Similarity=0.497  Sum_probs=75.8

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-CEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-QELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~Ey  468 (495)
                      .++|...+.||+|+||.||++.. .|+.||||.++...  ..+.|.+|+.++.+++||||+++++++... +..++|+||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~   96 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   96 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence            35688889999999999999987 58899999997543  456899999999999999999999987654 467999999


Q ss_pred             CCCCCHHHHHhcC
Q 011025          469 MPNKSLDVHLFGL  481 (495)
Q Consensus       469 ~~~GsL~~~L~~~  481 (495)
                      +++|+|.+++...
T Consensus        97 ~~~~~L~~~l~~~  109 (278)
T 1byg_A           97 MAKGSLVDYLRSR  109 (278)
T ss_dssp             CTTEEHHHHHHHH
T ss_pred             CCCCCHHHHHHhc
Confidence            9999999999753

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.03  E-value=5.8e-10  Score=112.73  Aligned_cols=104  Identities=19%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC------
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ------  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  460 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+...  .....+.+.+|+.++..++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            35788899999999999999984 46889999999753  3345677999999999999999999999987654      


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      ..++||||++ |+|.+++...-........+.++
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi  136 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQMELDHERMSYLLYQM  136 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHSCCCHHHHHHHHHHH
T ss_pred             ceEEEEEcCC-CCHHHHHhhccCHHHHHHHHHHH
Confidence            7899999996 57999887554333344444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.03  E-value=2.2e-10  Score=125.23  Aligned_cols=92  Identities=16%  Similarity=0.304  Sum_probs=75.9

Q ss_pred             cCCcccccccccCCceeEEeeeec--CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE-----
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA--DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE-----  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~--~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  461 (495)
                      .++|...++||+|+||.||++...  +|+.||||.+... .......|.+|+.++.+++||||+++++++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            367899999999999999999854  5899999999754 34556789999999999999999999999887544     


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .+|||||+++++|.+++...
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~  178 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQK  178 (681)
T ss_dssp             EEEEEECCCCEECC----CC
T ss_pred             eEEEEEeCCCCcHHHHHhCC
Confidence            69999999999999988763

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.02  E-value=5.6e-10  Score=111.50  Aligned_cols=92  Identities=23%  Similarity=0.354  Sum_probs=80.1

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCC--CCccceEEEEEeCCEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQH--KNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv  465 (495)
                      .+.|...++||+|+||.||++...+++.||||.+...  ..+..+.|.+|+.++.+++|  +||+++++++..++..++|
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv   87 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV   87 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence            3568888999999999999999878999999998743  34556789999999999976  9999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC
Q 011025          466 YEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~  482 (495)
                      || +.+|+|.+++....
T Consensus        88 ~e-~~~~~L~~~l~~~~  103 (343)
T 3dbq_A           88 ME-CGNIDLNSWLKKKK  103 (343)
T ss_dssp             EC-CCSEEHHHHHHHSC
T ss_pred             Ee-CCCCCHHHHHHhcC
Confidence            99 56899999997643

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.02  E-value=5.5e-10  Score=108.84  Aligned_cols=90  Identities=26%  Similarity=0.492  Sum_probs=75.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.++...  ....+.+.+|+.++.+++||||+++++++...+..++|+|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            5788889999999999999985 468999999997542  2334678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |++ |+|.+++...
T Consensus        83 ~~~-~~L~~~~~~~   95 (299)
T 2r3i_A           83 FLH-QDLKKFMDAS   95 (299)
T ss_dssp             CCS-EEHHHHHHHT
T ss_pred             ccc-CCHHHHHHhh
Confidence            997 7999999754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.02  E-value=4.8e-10  Score=108.21  Aligned_cols=87  Identities=30%  Similarity=0.525  Sum_probs=74.5

Q ss_pred             cCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----------
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----------  458 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----------  458 (495)
                      .++|...+.||+|+||.||++... +++.||+|.++...    +.+.+|+.++.+++||||+++++++..          
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            346788899999999999999964 78999999997543    356789999999999999999998754          


Q ss_pred             ------CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 ------GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 ------~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                            ....++|+||+++|+|.+++..
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~  113 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEK  113 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHH
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhh
Confidence                  3447999999999999999964

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.02  E-value=2.4e-10  Score=114.82  Aligned_cols=92  Identities=25%  Similarity=0.338  Sum_probs=79.0

Q ss_pred             cCCcccccccccCCceeEEeeee----cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      .++|...++||+|+||.||++..    .+++.||||+++...    ....+.+.+|+.++..+ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            35788899999999999999985    368899999997532    23345678899999999 7999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ..++||||+++|+|.++|...
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~  153 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQR  153 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHH
T ss_pred             eEEEEeecCCCCCHHHHHHHc
Confidence            999999999999999999753

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.02  E-value=4e-10  Score=117.19  Aligned_cols=92  Identities=16%  Similarity=0.360  Sum_probs=69.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  461 (495)
                      .++|...++||+|+||.||++.. .+++.||||++...  .....+.+.+|+.++..++||||+++++++...     ..
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            36788999999999999999984 46899999999753  344567899999999999999999999998543     56


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+ +|+|.+++....
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~~  151 (458)
T 3rp9_A          132 LYVVLEIA-DSDFKKLFRTPV  151 (458)
T ss_dssp             EEEEECCC-SEEHHHHHHSSC
T ss_pred             EEEEEecc-ccchhhhcccCC
Confidence            89999998 589999998653

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.02  E-value=4.8e-10  Score=115.78  Aligned_cols=92  Identities=18%  Similarity=0.347  Sum_probs=78.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  461 (495)
                      .++|...++||+|+||.||++.. .+++.||||++...  .....+.+.+|+.++..++||||+++++++...     ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            45788899999999999999984 46889999999753  334567899999999999999999999998765     56


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||++ |+|.+++....
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~  124 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI  124 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC
T ss_pred             EEEEEecCC-cCHHHHHhccC
Confidence            899999986 69999998653

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.00  E-value=6.6e-10  Score=120.84  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=78.9

Q ss_pred             HhcCCcccccccccCCceeEEeeeec----CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      ...++|...+.||+|+||.||+|...    .+..||||.++.. .....+.|.+|+.++.+++||||++++|++. .+..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            34567888899999999999999853    2457999998754 3444678999999999999999999999884 5668


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++||||+++|+|.+++....
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~  485 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRK  485 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHhcc
Confidence            99999999999999998654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.00  E-value=1.9e-09  Score=106.93  Aligned_cols=93  Identities=33%  Similarity=0.491  Sum_probs=73.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHH--HHcCCCCCccceEEEEEe-----CCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNL--IAKLQHKNLVRLLGCCLE-----GQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~-----~~~~  462 (495)
                      .++|...++||+|+||.||+|.. +++.||||++....   ...+..|..+  +..++||||+++++.+..     ....
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            46788899999999999999987 78999999997432   3445555544  445899999999986643     2356


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++||||+++|+|.+++......+.
T Consensus        88 ~lv~e~~~~g~L~~~l~~~~~~~~  111 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLHTSDWV  111 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHCCBCHH
T ss_pred             EEEEecCCCCcHHHHHhhcccchh
Confidence            899999999999999987766554

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.00  E-value=7.7e-10  Score=112.69  Aligned_cols=91  Identities=23%  Similarity=0.356  Sum_probs=79.3

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCC--CCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQ--HKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +.|...++||+|+||.||++....++.||||.+...  ..+..+.+.+|+.++.+++  ||||+++++++...+..++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            458889999999999999999777999999999643  3455678999999999996  599999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC
Q 011025          467 EYMPNKSLDVHLFGLS  482 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~  482 (495)
                      | +.+|+|.++|....
T Consensus       136 E-~~~~~L~~~l~~~~  150 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK  150 (390)
T ss_dssp             E-CCSEEHHHHHHHCS
T ss_pred             e-cCCCCHHHHHHhcC
Confidence            9 56899999997643

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.99  E-value=2e-10  Score=113.78  Aligned_cols=91  Identities=27%  Similarity=0.431  Sum_probs=75.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChh-hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQ-GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .+++.||||.++..... ....+.+|+.++.+++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            4678889999999999999995 46899999999754322 122466899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ |+|.+++....
T Consensus        82 ~~-~~l~~~~~~~~   94 (324)
T 3mtl_A           82 LD-KDLKQYLDDCG   94 (324)
T ss_dssp             CS-EEHHHHHHHTT
T ss_pred             cc-cCHHHHHHhcC
Confidence            97 69999987644

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.99  E-value=3.4e-10  Score=112.57  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=79.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCC--------hhhHHHHHHHHHHHHcCC---------CCCccce
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--------GQGLQEFKNEVNLIAKLQ---------HKNLVRL  452 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--------~~~~~~f~~E~~~l~~l~---------H~niv~l  452 (495)
                      .++|...++||+|+||.||++.. +|+.||||+++...        ....+.+.+|+.++.+++         ||||+++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            35677889999999999999987 78999999997542        233578999999998885         9999999


Q ss_pred             EEEEEe------------------------------CCEEEEEEecCCCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          453 LGCCLE------------------------------GQELLLIYEYMPNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       453 ~g~~~~------------------------------~~~~~lv~Ey~~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      .++...                              .+..+|||||+++|+|.+.+........ ....+.|+
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi  170 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQL  170 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHH
Confidence            887541                              5779999999999977666655443333 44444444

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=98.99  E-value=3.3e-10  Score=112.89  Aligned_cols=92  Identities=20%  Similarity=0.327  Sum_probs=79.1

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh--------hhHHHHHHHHHHHHcCCCCCccceEEEEEeCC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG--------QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~--------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  460 (495)
                      .++|...++||+|+||.||++. ..+++.||||.++....        ...+.+.+|+.++.+++||||+++++++...+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            4578889999999999999998 45789999999975421        13346788999999999999999999999999


Q ss_pred             EEEEEEecCCCC-CHHHHHhcC
Q 011025          461 ELLLIYEYMPNK-SLDVHLFGL  481 (495)
Q Consensus       461 ~~~lv~Ey~~~G-sL~~~L~~~  481 (495)
                      ..++|+||+.+| +|.+++...
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~  124 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRH  124 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTC
T ss_pred             EEEEEEEeCCCCccHHHHHHhc
Confidence            999999999877 999999865

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=98.99  E-value=1.2e-09  Score=111.01  Aligned_cols=98  Identities=24%  Similarity=0.428  Sum_probs=74.1

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCC--EE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQ--EL  462 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~--~~  462 (495)
                      ..++|...++||+|+||.||++.. .+|+.||||.+...  .....+.+.+|+.++..+. ||||+++++++...+  ..
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            346788999999999999999984 56899999999643  3455677889999999997 999999999987644  68


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLSI  487 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~~  487 (495)
                      ++||||++ |+|..++.........
T Consensus        87 ~lv~e~~~-~~L~~~~~~~~~~~~~  110 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRANILEPVH  110 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHTCCCHHH
T ss_pred             EEEecccC-cCHHHHHHcCCCCHHH
Confidence            99999997 6999999876555543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=98.99  E-value=6.1e-10  Score=112.49  Aligned_cols=96  Identities=22%  Similarity=0.371  Sum_probs=74.3

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||.+...  +....+.+.+|+.++..++||||+++++++...      .
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            45788899999999999999985 56899999999643  334467899999999999999999999998765      3


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ..++|+||+ +++|.+++........
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~~l~~~  128 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHEKLGED  128 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHH
T ss_pred             eEEEEEecC-CCCHHHHHhcCCCCHH
Confidence            469999999 8999999987655544

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.98  E-value=4.7e-10  Score=112.20  Aligned_cols=93  Identities=23%  Similarity=0.405  Sum_probs=73.0

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChh-----hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQ-----GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~-----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      ..++|...+.||+|+||.||++.. .+|+.||||.+......     ..+.+.+|+.++.+++||||+++++++...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            346788899999999999999995 46899999999743211     124688999999999999999999999988899


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||+++ +|.+++....
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~  106 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNS  106 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCC
T ss_pred             EEEEEcCCC-CHHHHHHhcC
Confidence            999999975 8999997654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=98.98  E-value=2.1e-10  Score=113.70  Aligned_cols=90  Identities=33%  Similarity=0.557  Sum_probs=74.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcE----EEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKA----IAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~----VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|.. .+++.    |++|.+.... .+....+.+|+.++.+++||||+++++++. .+..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            4678889999999999999984 34543    8888886432 334467889999999999999999999885 556899


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      |+||+++|+|.+++...
T Consensus        92 v~e~~~~~~L~~~l~~~  108 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQH  108 (325)
T ss_dssp             EEECCTTCBSHHHHHSS
T ss_pred             EEEeCCCCCHHHHHHHc
Confidence            99999999999999765

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=98.98  E-value=8.7e-10  Score=109.40  Aligned_cols=92  Identities=32%  Similarity=0.528  Sum_probs=76.7

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      .++|...++||+|+||.||++.. .+++    .|++|.+... .....+.+.+|+.++.+++||||+++++++..+. .+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~   92 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence            35788899999999999999984 3454    3578887643 3456788999999999999999999999998654 78


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        93 ~v~~~~~~g~L~~~l~~~~  111 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHK  111 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTT
T ss_pred             EEEEecCCCcHHHHHHhcC
Confidence            9999999999999997654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.97  E-value=1.5e-09  Score=108.52  Aligned_cols=96  Identities=21%  Similarity=0.340  Sum_probs=80.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  462 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||.+... .......+.+|+.++.+++||||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            46788899999999999999985 46899999999754 334467789999999999999999999987653     678


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++|+||++ |+|.+++........
T Consensus        90 ~lv~e~~~-~~L~~~~~~~~~~~~  112 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQMLSDD  112 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHCCCCHH
T ss_pred             EEEEeccC-ccHHHHHhhcCCCHH
Confidence            99999996 699999987655544

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.97  E-value=8e-10  Score=111.67  Aligned_cols=103  Identities=22%  Similarity=0.333  Sum_probs=82.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE----
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL----  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~----  462 (495)
                      .++|...++||+|+||.||++.. .+|+.||||.+...  +....+.+.+|+.++..++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            45788889999999999999984 46899999999754  334467899999999999999999999999876544    


Q ss_pred             --EEEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          463 --LLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       463 --~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                        ++|+||++ |+|.+++...-........+.+
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~q  152 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQ  152 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHH
T ss_pred             eEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHH
Confidence              99999997 7899988665433334444443

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=98.96  E-value=5.1e-10  Score=108.50  Aligned_cols=91  Identities=34%  Similarity=0.511  Sum_probs=69.3

Q ss_pred             cCCcccccccccCCceeEEeeeec--CCc--EEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA--DGK--AIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~--~g~--~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...++||+|+||.||++...  ++.  .||||.++..   .....+.|.+|+.++.+++||||+++++++..+. .
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            356888899999999999999842  333  6899999754   2345678999999999999999999999987654 8


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.+++...
T Consensus        96 ~~v~e~~~~~~L~~~l~~~  114 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKH  114 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHH
T ss_pred             eeeEecccCCCHHHHHHhc
Confidence            8999999999999999754

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=98.96  E-value=7.3e-10  Score=109.62  Aligned_cols=91  Identities=26%  Similarity=0.345  Sum_probs=77.4

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEe--------
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLE--------  458 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--------  458 (495)
                      ...+|...++||+|+||.||++.. .+++.||||++........+.+.+|+.++.++. ||||+++++++..        
T Consensus        26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            345788899999999999999994 578999999997766666788999999999996 9999999999853        


Q ss_pred             CCEEEEEEecCCCCCHHHHHhc
Q 011025          459 GQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ....++++||++ |+|.+++..
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~  126 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKK  126 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHH
T ss_pred             CceEEEEEEecC-CCHHHHHHH
Confidence            334799999995 899999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.96  E-value=8.6e-10  Score=109.34  Aligned_cols=92  Identities=20%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             hcCCcccc-cccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDE-NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~-~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ..+.|... ++||+|+||.||++.. .+++.||||.++..  ......++.+|+.++..+ +||||+++++++...+..+
T Consensus        26 ~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~  105 (327)
T 3lm5_A           26 FNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII  105 (327)
T ss_dssp             HHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence            34445555 7899999999999985 46899999999753  234467899999999999 5699999999999999999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +|+||+++|+|.+++..
T Consensus       106 lv~e~~~~~~L~~~~~~  122 (327)
T 3lm5_A          106 LILEYAAGGEIFSLCLP  122 (327)
T ss_dssp             EEEECCTTEEGGGGGSS
T ss_pred             EEEEecCCCcHHHHHHH
Confidence            99999999999999865

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=98.96  E-value=1.2e-09  Score=110.92  Aligned_cols=88  Identities=26%  Similarity=0.406  Sum_probs=69.3

Q ss_pred             HHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC-----
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ-----  460 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  460 (495)
                      ....++|...++||+|+||.||++.. .+|+.||||++.....    ...+|+.++..++||||+++++++....     
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            34567899999999999999999984 5789999999864422    2347999999999999999999985432     


Q ss_pred             ---------------------------------EEEEEEecCCCCCHHHHHh
Q 011025          461 ---------------------------------ELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       461 ---------------------------------~~~lv~Ey~~~GsL~~~L~  479 (495)
                                                       ..++||||++ |+|.++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~  129 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLK  129 (383)
T ss_dssp             -------------------------------CCEEEEEECCCS-EEHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHH
Confidence                                             3789999998 68887775

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.95  E-value=1.3e-09  Score=105.48  Aligned_cols=90  Identities=22%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhh-HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQG-LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...++||+|+||.||++.. .+|+.||||+++... ... .+.+..+...+..++||||+++++++..++..++|+
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            46788899999999999999984 578999999997542 222 334455555688889999999999999999999999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||++ |+|.+++..
T Consensus        86 e~~~-~~l~~~l~~   98 (290)
T 3fme_A           86 ELMD-TSLDKFYKQ   98 (290)
T ss_dssp             ECCS-EEHHHHHHH
T ss_pred             ehhc-cchHHHHHH
Confidence            9997 689888753

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.94  E-value=2.1e-09  Score=108.24  Aligned_cols=96  Identities=17%  Similarity=0.278  Sum_probs=80.3

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  462 (495)
                      .++|...++||+|+||.||++.. .++..||||.+.... ....+.+.+|+.++.+++||||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            35788899999999999999984 468899999997543 34457899999999999999999999998654     368


Q ss_pred             EEEEecCCCCCHHHHHhcCCCCHH
Q 011025          463 LLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++|+||++ |+|.+++........
T Consensus       106 ~iv~e~~~-~~L~~~l~~~~~~~~  128 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQHLSND  128 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHCCCCHH
T ss_pred             EEEEcccC-cCHHHHHHhCCCCHH
Confidence            99999997 699999987665554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.94  E-value=1.8e-09  Score=107.92  Aligned_cols=91  Identities=23%  Similarity=0.438  Sum_probs=75.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEe--------C
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--------G  459 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--------~  459 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.+....  ......+.+|+.++..++||||+++++++..        .
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            5788899999999999999995 578999999986442  2335678899999999999999999999876        3


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +..++|+||++ |+|.+++....
T Consensus        97 ~~~~lv~e~~~-~~l~~~l~~~~  118 (351)
T 3mi9_A           97 GSIYLVFDFCE-HDLAGLLSNVL  118 (351)
T ss_dssp             CEEEEEEECCS-EEHHHHHHCTT
T ss_pred             ceEEEEEeccC-CCHHHHHhhcc
Confidence            46899999997 57888887643

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=98.94  E-value=1.5e-10  Score=114.05  Aligned_cols=97  Identities=22%  Similarity=0.366  Sum_probs=81.6

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE  461 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  461 (495)
                      .......++|...++||+|+||.||+|...  ..+++|.++..  .....+.|.+|+.++.+++||||+++++++...+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~--~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWH--GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEES--SSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEc--CeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            333445678899999999999999999863  35999999743  23334668899999999999999999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+++++|.+++....
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSC
T ss_pred             eEEEeecccCCcHHHHHHhcC
Confidence            999999999999999998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.93  E-value=1.3e-09  Score=118.88  Aligned_cols=92  Identities=23%  Similarity=0.287  Sum_probs=79.2

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  463 (495)
                      ..++|...++||+|+||.||++.. .+++.||||++++.   .....+.+..|..++..+ +||||+++.+++...+..+
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            456788899999999999999995 46889999999743   223456788999999988 7999999999998889999


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      |||||+++|+|.++|..
T Consensus       419 lV~E~~~gg~L~~~l~~  435 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQ  435 (674)
T ss_dssp             EEEECCCSCBHHHHHHH
T ss_pred             EEEeCcCCCcHHHHHHh
Confidence            99999999999999975

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.93  E-value=9.5e-10  Score=110.14  Aligned_cols=102  Identities=22%  Similarity=0.329  Sum_probs=80.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE------  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  461 (495)
                      ++|...+.||+|+||.||++.. .+|+.||||.+...  +....+.+.+|+.++..++||||+++++++...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            5688889999999999999984 46899999999753  33446789999999999999999999999876543      


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHHHHHHHHH
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLY  493 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~  493 (495)
                      .++|+||++ |+|.+++...-........+.+
T Consensus       104 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~q  134 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQ  134 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTSCCCHHHHHHHHHH
T ss_pred             EEEEecccc-CCHHHHhcCCCCHHHHHHHHHH
Confidence            499999997 7999888654333333333333

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.93  E-value=1.1e-09  Score=110.59  Aligned_cols=96  Identities=23%  Similarity=0.371  Sum_probs=72.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------C
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------Q  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  460 (495)
                      .++|...+.||+|+||.||++. ..+|+.||||.+...  +....+.+.+|+.++..++||||+++++++...      .
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            3678889999999999999998 457899999999753  334567889999999999999999999998653      4


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHH
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ..++|+||+ +++|.+++........
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~~~l~~~  132 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKCQKLTDD  132 (367)
T ss_dssp             CCEEEEECC-CEECC-----CCCCHH
T ss_pred             eEEEEeccc-CCCHHHHHhcCCCCHH
Confidence            579999999 7999999987655544

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=98.93  E-value=2.7e-09  Score=103.78  Aligned_cols=90  Identities=22%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...+.||+|+||.||++. ..+++.||||.+....  ..+.+.+|+.++..+ +|+|++++++++......++|+|
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e   86 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   86 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence            3568889999999999999998 4678999999986443  234678999999999 89999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      |+ +|+|.+++....
T Consensus        87 ~~-~~~L~~~l~~~~  100 (298)
T 1csn_A           87 LL-GPSLEDLLDLCG  100 (298)
T ss_dssp             CC-CCBHHHHHHHTT
T ss_pred             ec-CCCHHHHHHHhc
Confidence            99 999999998543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.93  E-value=2.1e-09  Score=109.89  Aligned_cols=85  Identities=21%  Similarity=0.212  Sum_probs=69.6

Q ss_pred             Ccccc-cccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHH-cCCCCCccceEEEEEe----CCEEEE
Q 011025          392 HFSDE-NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIA-KLQHKNLVRLLGCCLE----GQELLL  464 (495)
Q Consensus       392 ~~~~~-~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~----~~~~~l  464 (495)
                      +|... ++||+|+||.||++.. .+++.||||+++..     ..+.+|+.++. ..+||||+++++++..    ....+|
T Consensus        62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l  136 (400)
T 1nxk_A           62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI  136 (400)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence            44444 6899999999999985 46889999999632     35678888874 4589999999998865    456899


Q ss_pred             EEecCCCCCHHHHHhcC
Q 011025          465 IYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~  481 (495)
                      ||||+++|+|.++|...
T Consensus       137 v~E~~~gg~L~~~l~~~  153 (400)
T 1nxk_A          137 VMECLDGGELFSRIQDR  153 (400)
T ss_dssp             EEECCCSEEHHHHHHCC
T ss_pred             EEEeCCCCcHHHHHHHh
Confidence            99999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=98.93  E-value=1.8e-09  Score=105.44  Aligned_cols=89  Identities=25%  Similarity=0.375  Sum_probs=73.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  463 (495)
                      ++|...++||+|+||.||++.. .+++.||||.+....    ....+.+.+|+.++.+++||||+++++++..  ....+
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence            5788899999999999999985 468899999997532    2346789999999999999999999999853  45789


Q ss_pred             EEEecCCCCCHHHHHhc
Q 011025          464 LIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~  480 (495)
                      +|+||+++| |.+++..
T Consensus        85 lv~e~~~~~-l~~~~~~  100 (305)
T 2wtk_C           85 MVMEYCVCG-MQEMLDS  100 (305)
T ss_dssp             EEEECCSEE-HHHHHHH
T ss_pred             EEehhccCC-HHHHHHh
Confidence            999999877 7777754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=98.92  E-value=4.8e-09  Score=103.70  Aligned_cols=89  Identities=20%  Similarity=0.385  Sum_probs=73.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHH-HHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVN-LIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||.++.. ......++..|+. ++..++||||+++++++..++..++|+
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            46788889999999999999995 46899999999754 3344456666766 677789999999999999999999999


Q ss_pred             ecCCCCCHHHHHh
Q 011025          467 EYMPNKSLDVHLF  479 (495)
Q Consensus       467 Ey~~~GsL~~~L~  479 (495)
                      ||++ |+|.+++.
T Consensus       101 e~~~-~~l~~~~~  112 (327)
T 3aln_A          101 ELMS-TSFDKFYK  112 (327)
T ss_dssp             CCCS-EEHHHHHH
T ss_pred             eecC-CChHHHHH
Confidence            9997 48888875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=98.92  E-value=4.2e-10  Score=121.44  Aligned_cols=91  Identities=25%  Similarity=0.354  Sum_probs=77.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe------CCEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE------GQEL  462 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~~  462 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.++.. .....+.|.+|+.++.+++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6789999999999999999985 56899999999754 45557789999999999999999999998654      5667


Q ss_pred             EEEEecCCCCCHHHHHhcC
Q 011025          463 LLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++|+||+++|+|.+++...
T Consensus        94 ~LVmEy~~ggsL~~~L~~~  112 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQF  112 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSS
T ss_pred             EEEEEeCCCCCHHHHHHhc
Confidence            9999999999999999864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.91  E-value=2.7e-09  Score=104.57  Aligned_cols=93  Identities=28%  Similarity=0.479  Sum_probs=72.7

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-----hhhHHHHHHHHHHHHcC---CCCCccceEEEEEeC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-----GQGLQEFKNEVNLIAKL---QHKNLVRLLGCCLEG  459 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-----~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~  459 (495)
                      ..++|...++||+|+||.||++.. .+++.||||.+....     ......+.+|+.++..+   +||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356899999999999999999994 578999999996322     11234667787777766   499999999999875


Q ss_pred             C-----EEEEEEecCCCCCHHHHHhcCC
Q 011025          460 Q-----ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       460 ~-----~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .     ..++|+||++ |+|.+++....
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~  113 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAP  113 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhcc
Confidence            4     4799999996 69999998654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=98.90  E-value=4.8e-09  Score=102.45  Aligned_cols=87  Identities=21%  Similarity=0.229  Sum_probs=71.8

Q ss_pred             CCcccc-cccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHH-HcCCCCCccceEEEEEe----CCEEE
Q 011025          391 NHFSDE-NKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLI-AKLQHKNLVRLLGCCLE----GQELL  463 (495)
Q Consensus       391 ~~~~~~-~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~----~~~~~  463 (495)
                      ++|... ++||+|+||.||++.. .+++.||+|.++..     ..+.+|+.++ ..++||||+++++++..    ....+
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            345555 7799999999999984 56899999999642     4567888887 55699999999999876    56689


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        92 lv~e~~~~~~L~~~l~~~~  110 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRG  110 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCT
T ss_pred             EEEeecCCCcHHHHHHhcc
Confidence            9999999999999997643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.89  E-value=2.9e-09  Score=104.61  Aligned_cols=94  Identities=22%  Similarity=0.333  Sum_probs=81.0

Q ss_pred             HhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCC--CCCccceEEEEEeCCEEE
Q 011025          388 EATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQ--HKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       388 ~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~  463 (495)
                      ...++|...+.||+|+||.||++...+++.||||.+...  ..+..+.+.+|+.++.+++  |+||+++++++...+..+
T Consensus        25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~  104 (313)
T 3cek_A           25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  104 (313)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred             eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence            345678889999999999999999878999999999643  3455678999999999997  599999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+| +.+|+|.+++....
T Consensus       105 lv~e-~~~~~L~~~l~~~~  122 (313)
T 3cek_A          105 MVME-CGNIDLNSWLKKKK  122 (313)
T ss_dssp             EEEC-CCSEEHHHHHHHCS
T ss_pred             EEEe-cCCCcHHHHHHhcC
Confidence            9999 56899999997643

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.88  E-value=6.9e-10  Score=108.97  Aligned_cols=95  Identities=25%  Similarity=0.361  Sum_probs=70.6

Q ss_pred             HHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcC----CCCCccceEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKL----QHKNLVRLLGC  455 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l----~H~niv~l~g~  455 (495)
                      ....++|...++||+|+||.||++.. .+++.||||.+.....      .....+.+|+.++.++    +|+||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            34457899999999999999999984 5688999999975432      1233466899998888    89999999999


Q ss_pred             EEeCCEEEEEEec-CCCCCHHHHHhcC
Q 011025          456 CLEGQELLLIYEY-MPNKSLDVHLFGL  481 (495)
Q Consensus       456 ~~~~~~~~lv~Ey-~~~GsL~~~L~~~  481 (495)
                      +...+..++|+|| +++++|.+++...
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~  133 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEK  133 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHH
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhc
Confidence            9888889999999 8999999999753

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.87  E-value=3.6e-09  Score=109.26  Aligned_cols=87  Identities=22%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEecCC
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      .+...++||+|+||+||.....+|+.||||++...   ..+.+.+|+.++.++ +||||+++++++..++..++|+||++
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence            34556789999999997665557999999998743   345678999999886 89999999999998999999999995


Q ss_pred             CCCHHHHHhcCC
Q 011025          471 NKSLDVHLFGLS  482 (495)
Q Consensus       471 ~GsL~~~L~~~~  482 (495)
                       |+|.+++....
T Consensus        93 -gsL~~~l~~~~  103 (434)
T 2rio_A           93 -LNLQDLVESKN  103 (434)
T ss_dssp             -EEHHHHHHTC-
T ss_pred             -CCHHHHHhccC
Confidence             79999998654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=98.87  E-value=2.2e-09  Score=108.07  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=72.1

Q ss_pred             hcCCcccccccccCCceeEEeeeecC------CcEEEEEEcccCChhh-----------HHHHHHHHHHHHcCCCCCccc
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLAD------GKAIAVKRLSRTSGQG-----------LQEFKNEVNLIAKLQHKNLVR  451 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~------g~~VaVK~l~~~~~~~-----------~~~f~~E~~~l~~l~H~niv~  451 (495)
                      ..++|...++||+|+||.||+|....      ++.||||.+.......           ...+..|+..+..++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            34578899999999999999998643      4789999987554211           123455666778889999999


Q ss_pred             eEEEEEeC----CEEEEEEecCCCCCHHHHHhcCC
Q 011025          452 LLGCCLEG----QELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       452 l~g~~~~~----~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +++++...    ...+|||||+ +|+|.+++....
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~  146 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA  146 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc
Confidence            99998764    3479999999 999999997653

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.86  E-value=7.1e-10  Score=112.28  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=72.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHH---HHHHcCCCCCccceE-------EE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEV---NLIAKLQHKNLVRLL-------GC  455 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~  455 (495)
                      .++|...++||+|+||.||+|.. .+|+.||||++...   .....+.|.+|+   .++++++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            45788889999999999999994 56999999999743   334567899999   556666899999998       55


Q ss_pred             EEeCC-----------------EEEEEEecCCCCCHHHHHhc
Q 011025          456 CLEGQ-----------------ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       456 ~~~~~-----------------~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      +..++                 ..++||||+ +|+|.++|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~  192 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEV  192 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHH
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHh
Confidence            54432                 278999999 6899999975

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=98.85  E-value=1.3e-09  Score=109.19  Aligned_cols=86  Identities=14%  Similarity=0.166  Sum_probs=72.0

Q ss_pred             cCCcccccccccCCceeEEeeeec---------CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccc---------
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA---------DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR---------  451 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~---------~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~---------  451 (495)
                      .++|...+.||+|+||.||++...         +++.||||.+...     +.+.+|+.++.+++||||++         
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            357888999999999999999864         3789999999743     36889999999999999987         


Q ss_pred             ------eEEEEEe-CCEEEEEEecCCCCCHHHHHhcC
Q 011025          452 ------LLGCCLE-GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       452 ------l~g~~~~-~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                            +++++.. .+..++||||+ +|+|.+++...
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~  151 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS  151 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence                  6777776 67889999999 99999999864

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=98.84  E-value=2.5e-09  Score=106.76  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             cCCcccccccccCCceeEEeeeec----CCcEEEEEEcccCChh-----------hHHHHHHHHHHHHcCCCCCccceEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRTSGQ-----------GLQEFKNEVNLIAKLQHKNLVRLLG  454 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~----~g~~VaVK~l~~~~~~-----------~~~~f~~E~~~l~~l~H~niv~l~g  454 (495)
                      .++|...++||+|+||.||++...    .+..+|||.+......           ....+.+|+..+..++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            357888999999999999999964    5678999998754321           1234778889999999999999999


Q ss_pred             EEEe----CCEEEEEEecCCCCCHHHHHhcC
Q 011025          455 CCLE----GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       455 ~~~~----~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      ++..    ....++||||+ +|+|.+++...
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~  145 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQN  145 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGG
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhc
Confidence            9987    67789999999 99999999764

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.84  E-value=3.3e-09  Score=104.57  Aligned_cols=92  Identities=26%  Similarity=0.462  Sum_probs=72.9

Q ss_pred             hcCCcccccccccCCceeEEeeee--cCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcC---CCCCccceEEEEE----
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL--ADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKL---QHKNLVRLLGCCL----  457 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~--~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~----  457 (495)
                      ..++|...+.||+|+||.||++..  .+|+.||||.++...  ......+.+|+.++..+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            346788999999999999999985  468899999997432  22233566777776665   8999999999987    


Q ss_pred             -eCCEEEEEEecCCCCCHHHHHhcC
Q 011025          458 -EGQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       458 -~~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                       .....++|+||++ |+|.+++...
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~  112 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKV  112 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHS
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhc
Confidence             3456799999997 7999999764

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.82  E-value=7e-09  Score=105.97  Aligned_cols=81  Identities=27%  Similarity=0.436  Sum_probs=63.5

Q ss_pred             ccccccCCceeEEeeeec---CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEEEEecCC
Q 011025          396 ENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLLIYEYMP  470 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~Ey~~  470 (495)
                      +++||+|+||.||++...   +++.||||.+....  ....+.+|+.++.+++||||+++++++..  ....++|+||++
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~  103 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE  103 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence            468999999999999854   47899999997542  23468899999999999999999999965  568899999996


Q ss_pred             CCCHHHHHh
Q 011025          471 NKSLDVHLF  479 (495)
Q Consensus       471 ~GsL~~~L~  479 (495)
                       |+|.+++.
T Consensus       104 -~~l~~~~~  111 (405)
T 3rgf_A          104 -HDLWHIIK  111 (405)
T ss_dssp             -EEHHHHHH
T ss_pred             -CCHHHHHH
Confidence             68888875

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.82  E-value=2.7e-09  Score=110.20  Aligned_cols=89  Identities=21%  Similarity=0.253  Sum_probs=73.9

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ..+|...++||+|+||.||.....+++.||||++.....   ..+.+|+.++.++ +||||+++++++......++|+||
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence            346788899999999996554445789999999975432   2356899999999 899999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      ++ |+|.+++....
T Consensus       100 ~~-g~L~~~l~~~~  112 (432)
T 3p23_A          100 CA-ATLQEYVEQKD  112 (432)
T ss_dssp             CS-EEHHHHHHSSS
T ss_pred             CC-CCHHHHHHhcC
Confidence            96 69999997654

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.81  E-value=5.7e-09  Score=104.44  Aligned_cols=93  Identities=26%  Similarity=0.368  Sum_probs=63.8

Q ss_pred             HHHHHhcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE-
Q 011025          384 RLALEATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE-  461 (495)
Q Consensus       384 ~~l~~~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-  461 (495)
                      .......++|...++||+|+||.||++.. .+|+.||||.+.... .....+.+|+..+..++||||+++++++...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            34556678999999999999999999995 468999999986432 223456788888899999999999999876433 


Q ss_pred             ------EEEEEecCCCCCHHHHH
Q 011025          462 ------LLLIYEYMPNKSLDVHL  478 (495)
Q Consensus       462 ------~~lv~Ey~~~GsL~~~L  478 (495)
                            .++||||+++ +|...+
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~  116 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCC  116 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHH
T ss_pred             cccceeEEEEeecccc-cHHHHH
Confidence                  7899999976 555444

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.79  E-value=1.2e-08  Score=101.64  Aligned_cols=88  Identities=22%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             cCCcccc-cccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEE
Q 011025          390 TNHFSDE-NKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELL  463 (495)
Q Consensus       390 t~~~~~~-~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  463 (495)
                      .++|... ++||+|+||.||++... +++.||||++... .....   .....+..++||||+++++++..    ....+
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~---e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-PKARQ---EVDHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-HHHHH---HHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-HHHHH---HHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            4567774 46999999999999854 6899999999753 22222   22234566799999999999875    34479


Q ss_pred             EEEecCCCCCHHHHHhcC
Q 011025          464 LIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~  481 (495)
                      +||||+++|+|.+++...
T Consensus       103 lv~e~~~gg~L~~~l~~~  120 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQER  120 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC
T ss_pred             EEEeccCCCCHHHHHHhc
Confidence            999999999999999865

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.79  E-value=8.3e-09  Score=101.92  Aligned_cols=91  Identities=19%  Similarity=0.315  Sum_probs=77.1

Q ss_pred             cCCcccccccccCCceeEEeeee--cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCC------ccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL--ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN------LVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~--~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~  461 (495)
                      .++|...++||+|+||.||++..  .+++.||||.++.. ....+.+.+|+.++..++|+|      ++++++++...+.
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            35788899999999999999984  36889999999754 344577889999998887654      9999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++|+||+ +++|.+++....
T Consensus        92 ~~lv~e~~-~~~l~~~l~~~~  111 (339)
T 1z57_A           92 ICIVFELL-GLSTYDFIKENG  111 (339)
T ss_dssp             EEEEEECC-CCBHHHHHHHTT
T ss_pred             EEEEEcCC-CCCHHHHHHhcC
Confidence            99999999 899999997653

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.79  E-value=2.3e-08  Score=103.11  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=76.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcC------CCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL------QHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l------~H~niv~l~g~~~~~~~~  462 (495)
                      ..+|...++||+|+||.||++.. .+++.||||+++.. .....++.+|+.++..+      +|+||+++++.+...+..
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            45688899999999999999984 46889999999753 33346778888888776      577999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhcCC
Q 011025          463 LLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++|+||++ |+|.+++....
T Consensus       175 ~lv~e~~~-~~L~~~l~~~~  193 (429)
T 3kvw_A          175 CMTFELLS-MNLYELIKKNK  193 (429)
T ss_dssp             EEEECCCC-CBHHHHHHHTT
T ss_pred             EEEEeccC-CCHHHHHHhcc
Confidence            99999995 79999997654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=98.78  E-value=1.5e-08  Score=98.32  Aligned_cols=89  Identities=24%  Similarity=0.348  Sum_probs=74.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEE-EeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC-LEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv~E  467 (495)
                      .++|...+.||+|+||.||++.. .+++.||||.+.....  .+++.+|+.++..++|++++..++.+ ...+..++|+|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            46788899999999999999994 6799999999875432  24688999999999998877776665 55778899999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+ +|+|.+++...
T Consensus        86 ~~-~~~L~~~~~~~   98 (296)
T 3uzp_A           86 LL-GPSLEDLFNFC   98 (296)
T ss_dssp             CC-CCBHHHHHHHT
T ss_pred             ec-CCCHHHHHHhh
Confidence            99 99999999743

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=98.77  E-value=1.3e-08  Score=99.80  Aligned_cols=89  Identities=18%  Similarity=0.318  Sum_probs=64.6

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhh-HHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQG-LQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      .++|...+.||+|+||.||++.. .+|+.||||.+.... ... .+.+..+..++..++||||+++++++..++..++|+
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            35678889999999999999996 468999999997543 222 334455556788889999999999999999999999


Q ss_pred             ecCCCCCHHHHHh
Q 011025          467 EYMPNKSLDVHLF  479 (495)
Q Consensus       467 Ey~~~GsL~~~L~  479 (495)
                      ||+ ++.+..++.
T Consensus       104 e~~-~~~~~~l~~  115 (318)
T 2dyl_A          104 ELM-GTCAEKLKK  115 (318)
T ss_dssp             CCC-SEEHHHHHH
T ss_pred             ecc-CCcHHHHHH
Confidence            999 555555554

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.76  E-value=9.2e-09  Score=104.16  Aligned_cols=89  Identities=19%  Similarity=0.325  Sum_probs=72.7

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC--------CCCccceEEEEE---
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ--------HKNLVRLLGCCL---  457 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~--------H~niv~l~g~~~---  457 (495)
                      .++|...++||+|+||.||++. ..+++.||||+++.. ....+.+.+|+.++..++        |+||+++++.+.   
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            4678999999999999999998 456889999999743 344577899999999885        788999999887   


Q ss_pred             -eCCEEEEEEecCCCCCHHHHHhc
Q 011025          458 -EGQELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       458 -~~~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                       .....++||||+ +|+|.+++..
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~  137 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIK  137 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHH
T ss_pred             CCCceEEEEEecc-CccHHHHHHh
Confidence             345789999999 5666666653

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.75  E-value=9.4e-09  Score=109.13  Aligned_cols=85  Identities=9%  Similarity=0.080  Sum_probs=63.8

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEEcccCC---h-----hhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS---G-----QGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~---~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ..++||+|+||.||++.. .++.+++|......   .     ...+.|.+|+.++.+++||||+++..++...++.+|||
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            356899999999999965 57888998864321   1     12356899999999999999997777777788889999


Q ss_pred             ecCCCCCHHHHHhc
Q 011025          467 EYMPNKSLDVHLFG  480 (495)
Q Consensus       467 Ey~~~GsL~~~L~~  480 (495)
                      ||+++|+|.+++..
T Consensus       419 E~~~ggsL~~~l~~  432 (540)
T 3en9_A          419 SYINGKLAKDVIED  432 (540)
T ss_dssp             ECCCSEEHHHHSTT
T ss_pred             ECCCCCCHHHHHHH
Confidence            99999999999987

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.75  E-value=7.2e-09  Score=106.54  Aligned_cols=84  Identities=27%  Similarity=0.496  Sum_probs=66.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC----C--EEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG----Q--ELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----~--~~~  463 (495)
                      .+|...++||+|+||.||++.. .+|+.||||.+....    ..+.+|+.++.+++||||+++++++...    +  ..+
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            3577889999999999999996 468999999996432    2234799999999999999999988642    2  257


Q ss_pred             EEEecCCCCCHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLF  479 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~  479 (495)
                      +|+||+++ +|.+++.
T Consensus       130 lv~e~~~~-~l~~~~~  144 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVAR  144 (420)
T ss_dssp             EEEECCCE-EHHHHHH
T ss_pred             eehhcccc-cHHHHHH
Confidence            89999975 5666654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=98.74  E-value=1.7e-08  Score=97.76  Aligned_cols=90  Identities=23%  Similarity=0.344  Sum_probs=70.9

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEE-EeCCEEEEEE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC-LEGQELLLIY  466 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv~  466 (495)
                      ..++|...+.||+|+||.||++.. .+++.||||.+.....  ..++.+|+.++..++|+|++..++.+ ...+..++|+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            346789999999999999999984 5789999998764322  23578999999999988887777666 5577889999


Q ss_pred             ecCCCCCHHHHHhcC
Q 011025          467 EYMPNKSLDVHLFGL  481 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~  481 (495)
                      ||+ +|+|.+++...
T Consensus        85 e~~-~~~L~~~~~~~   98 (296)
T 4hgt_A           85 ELL-GPSLEDLFNFC   98 (296)
T ss_dssp             ECC-CCBHHHHHHHT
T ss_pred             Ecc-CCCHHHHHHHh
Confidence            999 99999999743

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.74  E-value=1e-08  Score=104.41  Aligned_cols=83  Identities=22%  Similarity=0.462  Sum_probs=66.0

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCE------EEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQE------LLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~~l  464 (495)
                      .+|...++||+|+||.||++....+..||+|.+.....    ...+|+.++..++||||+++++++...+.      .++
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence            46888899999999999999976777799998864321    12379999999999999999999865433      789


Q ss_pred             EEecCCCCCHHHH
Q 011025          465 IYEYMPNKSLDVH  477 (495)
Q Consensus       465 v~Ey~~~GsL~~~  477 (495)
                      |+||++++.+...
T Consensus       116 v~e~~~~~l~~~~  128 (394)
T 4e7w_A          116 VLEYVPETVYRAS  128 (394)
T ss_dssp             EEECCSEEHHHHH
T ss_pred             EeeccCccHHHHH
Confidence            9999987644443

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.73  E-value=6.5e-09  Score=102.64  Aligned_cols=94  Identities=24%  Similarity=0.361  Sum_probs=78.3

Q ss_pred             HHhcCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCC--CCCccceEEEEE
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQ--HKNLVRLLGCCL  457 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~--H~niv~l~g~~~  457 (495)
                      ....++|...++||+|+||.||++. ..+++.||||.++....      ...+.+.+|+.++.+++  |+||+++++++.
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~  118 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE  118 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence            3455779999999999999999998 45789999999975321      12345778999999996  599999999999


Q ss_pred             eCCEEEEEEecCCC-CCHHHHHhc
Q 011025          458 EGQELLLIYEYMPN-KSLDVHLFG  480 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~-GsL~~~L~~  480 (495)
                      .++..++|+|++.+ ++|.+++..
T Consensus       119 ~~~~~~lv~e~~~~~~~L~~~l~~  142 (320)
T 3a99_A          119 RPDSFVLILERPEPVQDLFDFITE  142 (320)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHH
T ss_pred             cCCcEEEEEEcCCCCccHHHHHhc
Confidence            99999999999976 999999975

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.71  E-value=1.5e-08  Score=102.27  Aligned_cols=88  Identities=11%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHH---HHHcCCCCCccceE-------EEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVN---LIAKLQHKNLVRLL-------GCC  456 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~---~l~~l~H~niv~l~-------g~~  456 (495)
                      ..|...++||+|+||.||++.. .+|+.||||++....   ....+.+.+|+.   ++.. +||||++++       ++.
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            4578889999999999999994 478999999998643   234567788854   5555 799977744       444


Q ss_pred             EeC-----------------CEEEEEEecCCCCCHHHHHhc
Q 011025          457 LEG-----------------QELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       457 ~~~-----------------~~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..+                 ...++||||++ |+|.+++..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~  180 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFST  180 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHH
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHH
Confidence            332                 33799999998 999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=98.70  E-value=4e-08  Score=102.83  Aligned_cols=89  Identities=22%  Similarity=0.299  Sum_probs=72.8

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC-CCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH-KNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||++.. .+++.||||++.....  ..++.+|+.++..++| +++..+..+....+..+||||
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            35788899999999999999984 5789999998864432  2357899999999987 555566666677888999999


Q ss_pred             cCCCCCHHHHHhcC
Q 011025          468 YMPNKSLDVHLFGL  481 (495)
Q Consensus       468 y~~~GsL~~~L~~~  481 (495)
                      |+ +++|.+++...
T Consensus        84 ~~-g~sL~~ll~~~   96 (483)
T 3sv0_A           84 LL-GPSLEDLFNFC   96 (483)
T ss_dssp             CC-CCBHHHHHHHT
T ss_pred             CC-CCCHHHHHHhh
Confidence            99 99999999743

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.67  E-value=2.3e-08  Score=100.42  Aligned_cols=89  Identities=16%  Similarity=0.293  Sum_probs=75.1

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-----------CCCccceEEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-----------HKNLVRLLGCCL  457 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~  457 (495)
                      .++|...++||+|+||.||++.. .+++.||||.+... ....+.+.+|+.++.+++           |+||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            35788899999999999999984 57899999999743 334567889999998876           899999999987


Q ss_pred             eCC----EEEEEEecCCCCCHHHHHhc
Q 011025          458 EGQ----ELLLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       458 ~~~----~~~lv~Ey~~~GsL~~~L~~  480 (495)
                      ..+    ..++|+||+ +++|.+++..
T Consensus        97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~  122 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVL-GENLLALIKK  122 (373)
T ss_dssp             EEETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred             ccCCCCceEEEEEecC-CCCHHHHHHH
Confidence            643    679999999 9999999975

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.65  E-value=7e-08  Score=97.67  Aligned_cols=92  Identities=22%  Similarity=0.305  Sum_probs=76.5

Q ss_pred             hcCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CC-----CccceEEEEEeCCE
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HK-----NLVRLLGCCLEGQE  461 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g~~~~~~~  461 (495)
                      ..++|...++||+|+||.||+|.. .+++.||||+++.. .....++..|+.++..++ |+     +|+++.+.+...+.
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            457899999999999999999984 46889999999743 334567888998888874 55     49999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      .++||||++ |+|.+++....
T Consensus       131 ~~lv~e~~~-~~L~~~l~~~~  150 (382)
T 2vx3_A          131 LCLVFEMLS-YNLYDLLRNTN  150 (382)
T ss_dssp             EEEEEECCC-CBHHHHHHHTT
T ss_pred             eEEEEecCC-CCHHHHHhhcC
Confidence            999999995 69999997653

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=98.56  E-value=7.9e-08  Score=93.30  Aligned_cols=90  Identities=14%  Similarity=0.075  Sum_probs=68.3

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeeecCCcEEEEEEcccCCh------------------hhHHHHHHHHHHHHcCCC
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG------------------QGLQEFKNEVNLIAKLQH  446 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~------------------~~~~~f~~E~~~l~~l~H  446 (495)
                      .+......+...+.||+|+||.||++...+|+.||||.++....                  .....+.+|+.++.+++ 
T Consensus        84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-  162 (282)
T 1zar_A           84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-  162 (282)
T ss_dssp             HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence            33444456667799999999999999987799999999964321                  13567999999999999 


Q ss_pred             CCccceEEEEEeCCEEEEEEecCCCCCHHHHHh
Q 011025          447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       447 ~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                       | +++.++... +..++||||+++|+|.+ +.
T Consensus       163 -~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~  191 (282)
T 1zar_A          163 -G-LAVPKVYAW-EGNAVLMELIDAKELYR-VR  191 (282)
T ss_dssp             -T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CC
T ss_pred             -C-CCcCeEEec-cceEEEEEecCCCcHHH-cc
Confidence             4 555554433 44599999999999998 53

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.55  E-value=1.1e-07  Score=94.39  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             cCCcccccccccCCceeEEeeeec-C-CcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCC------ccceEEEEEeCCE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA-D-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN------LVRLLGCCLEGQE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~-~-g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~  461 (495)
                      .++|...++||+|+||.||++... . ++.||||+++.. ....+.+.+|+.++..++|+|      ++.+.+++...+.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            367888999999999999999843 3 478999999753 344567889999999987766      8999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcC
Q 011025          462 LLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      .++|+||+ +|+|.+++...
T Consensus        97 ~~lv~e~~-~~~l~~~l~~~  115 (355)
T 2eu9_A           97 MCIAFELL-GKNTFEFLKEN  115 (355)
T ss_dssp             EEEEEECC-CCBHHHHHHHT
T ss_pred             EEEEEecc-CCChHHHHHhc
Confidence            99999999 67777777644

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.46  E-value=1.8e-07  Score=99.79  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             ccccCCceeEEeee-ecCCcEEEEEEcccCC----------hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTS----------GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       398 ~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~----------~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ..+.|++|.+.++. +--|+.++||.+....          ....++|.+|+.+|.++ +|+||++++++....+..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            35566666655544 3358899999996431          23356799999999999 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          466 YEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      |||++||+|.++|..... .+....+.|+
T Consensus       321 MEyv~G~~L~d~i~~~~~-l~~~~I~~QI  348 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGEE-IDREKILGSL  348 (569)
T ss_dssp             EECCCSEEHHHHHHTTCC-CCHHHHHHHH
T ss_pred             EecCCCCcHHHHHHhCCC-CCHHHHHHHH
Confidence            999999999999986542 2334455555

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.02  E-value=3.8e-06  Score=80.12  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             cccccccccCCceeEEeeee-cCCcE--EEEEEcccCCh------------------------hhHHHHHHHHHHHHcCC
Q 011025          393 FSDENKLGQGGFGPVYKGTL-ADGKA--IAVKRLSRTSG------------------------QGLQEFKNEVNLIAKLQ  445 (495)
Q Consensus       393 ~~~~~~LG~G~fG~Vykg~~-~~g~~--VaVK~l~~~~~------------------------~~~~~f~~E~~~l~~l~  445 (495)
                      +...+.||+|+||.||+|.. .+|+.  ||||.++....                        .....+.+|+.++..++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45668899999999999996 68888  99998754311                        01236889999999998


Q ss_pred             CCCc--cceEEEEEeCCEEEEEEecCCC-C----CHHHHHhc
Q 011025          446 HKNL--VRLLGCCLEGQELLLIYEYMPN-K----SLDVHLFG  480 (495)
Q Consensus       446 H~ni--v~l~g~~~~~~~~~lv~Ey~~~-G----sL~~~L~~  480 (495)
                      |+|+  ..++.  .  ...+|||||+.+ |    +|.+++..
T Consensus       129 ~~~i~~p~~~~--~--~~~~lVmE~~g~~g~~~~~L~~~~~~  166 (258)
T 1zth_A          129 EAGVSVPQPYT--Y--MKNVLLMEFIGEDELPAPTLVELGRE  166 (258)
T ss_dssp             HTTCCCCCEEE--E--ETTEEEEECCEETTEECCBHHHHGGG
T ss_pred             hCCCCCCeEEE--c--CCCEEEEEecCCCCCccccHHHHhhc
Confidence            8865  33333  2  345899999942 4    78877654

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.87  E-value=1.2e-05  Score=82.10  Aligned_cols=57  Identities=19%  Similarity=0.188  Sum_probs=46.2

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQH  446 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H  446 (495)
                      ...|...++||+|+||.||++. ..+|+.||||++....   ....+.|.+|+.++..++|
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~  137 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG  137 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence            3457778899999999999999 5679999999997432   2336789999999999987

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.78  E-value=5.5e-06  Score=83.47  Aligned_cols=86  Identities=9%  Similarity=0.050  Sum_probs=55.2

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCC--------------hhhHHHHH--------HHHHHHHcCCCCCc
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--------------GQGLQEFK--------NEVNLIAKLQHKNL  449 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--------------~~~~~~f~--------~E~~~l~~l~H~ni  449 (495)
                      -+.....||+|+||.||+|...+|+.||||+++...              ......+.        .|...|.++.+.++
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            477888999999999999998889999999875321              01112222        34555555544433


Q ss_pred             cceEEEEEeCCEEEEEEecCCCCCHHHHHh
Q 011025          450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       450 v~l~g~~~~~~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      .-..-+....  .+|||||++++.|..++.
T Consensus       176 ~vp~p~~~~~--~~LVME~i~G~~L~~l~~  203 (397)
T 4gyi_A          176 PVPEPIAQSR--HTIVMSLVDALPMRQVSS  203 (397)
T ss_dssp             SCCCEEEEET--TEEEEECCSCEEGGGCCC
T ss_pred             CCCeeeeccC--ceEEEEecCCccHhhhcc
Confidence            2211111212  279999999999877543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.29  E-value=0.00071  Score=63.93  Aligned_cols=89  Identities=9%  Similarity=-0.025  Sum_probs=70.1

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .+.+.....++.|+.+.||+... .++.+++|............+.+|+.++..+. |.++.+++++....+..++||||
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~   91 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSE   91 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEEC
T ss_pred             hccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEe
Confidence            34566677788888899999875 46889999987532122346889999999884 67788899988888889999999


Q ss_pred             CCCCCHHHHHh
Q 011025          469 MPNKSLDVHLF  479 (495)
Q Consensus       469 ~~~GsL~~~L~  479 (495)
                      +++.+|.+.+.
T Consensus        92 i~G~~l~~~~~  102 (263)
T 3tm0_A           92 ADGVLCSEEYE  102 (263)
T ss_dssp             CSSEEHHHHCC
T ss_pred             cCCeehhhccC
Confidence            99999988643

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.49  E-value=0.0029  Score=59.20  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             ccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCC--ccceEEEEEeCCEEEEEEecCCCCCHH
Q 011025          400 GQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN--LVRLLGCCLEGQELLLIYEYMPNKSLD  475 (495)
Q Consensus       400 G~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~lv~Ey~~~GsL~  475 (495)
                      +.|..+.||+....+|..+++|.....   ....+.+|+.++..+.+.+  +.++++....++..++||||+++.+|.
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~  103 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL  103 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC
Confidence            455669999998767888999997643   2245778999888885545  445888877777789999999999884

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=93.39  E-value=0.098  Score=49.87  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             CcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCC---CccceEEEEEeCCEEEEEEec
Q 011025          392 HFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHK---NLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .+...+.+|.|..+.||+..+.+|+.+.||+-+.........|..|...|..|...   -+.+.++.  ..  -++|+||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~~--~~lv~e~   91 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--DD--RTLAMEW   91 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--ET--TEEEEEC
T ss_pred             CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--cC--ceEEEEe
Confidence            45556789999999999999999999999987755444445688999888877422   23344443  22  3789999


Q ss_pred             CCCCCH
Q 011025          469 MPNKSL  474 (495)
Q Consensus       469 ~~~GsL  474 (495)
                      ++.+..
T Consensus        92 l~~~~~   97 (288)
T 3f7w_A           92 VDERPP   97 (288)
T ss_dssp             CCCCCC
T ss_pred             ecccCC
Confidence            987654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=92.66  E-value=0.11  Score=51.19  Aligned_cols=80  Identities=13%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             cccccccCCceeEEeeeecCCcEEEEEEcc--cCC-hhhHHHHHHHHHHHHcCC--CCCccceEEEEEeC---CEEEEEE
Q 011025          395 DENKLGQGGFGPVYKGTLADGKAIAVKRLS--RTS-GQGLQEFKNEVNLIAKLQ--HKNLVRLLGCCLEG---QELLLIY  466 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~--~~~-~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~---~~~~lv~  466 (495)
                      ..+.|+.|.++.||+.... +..+++|+..  ... ......+.+|..++..+.  +..+.++++.+...   +..++||
T Consensus        42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm  120 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM  120 (359)
T ss_dssp             EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred             eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence            3567899999999998874 4577788776  332 122456888999999886  45577888887665   3479999


Q ss_pred             ecCCCCCHH
Q 011025          467 EYMPNKSLD  475 (495)
Q Consensus       467 Ey~~~GsL~  475 (495)
                      ||+++..+.
T Consensus       121 e~v~G~~l~  129 (359)
T 3dxp_A          121 EFVSGRVLW  129 (359)
T ss_dssp             ECCCCBCCC
T ss_pred             EecCCeecC
Confidence            999998874

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=90.62  E-value=0.81  Score=44.26  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC---CCCccceEEEEEeCCEEEEEEecCC
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ---HKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ...+.|+.|....+|+... +++.+.||.....   ....|..|...+..|.   ...+.++++.....+..++||||++
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~  114 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN  114 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence            3456789999999999876 4677888887632   3567888988888773   3567788888777788999999999


Q ss_pred             CCCH
Q 011025          471 NKSL  474 (495)
Q Consensus       471 ~GsL  474 (495)
                      +..+
T Consensus       115 G~~~  118 (312)
T 3jr1_A          115 KSKN  118 (312)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8865

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=89.58  E-value=0.05  Score=56.05  Aligned_cols=61  Identities=8%  Similarity=0.082  Sum_probs=18.5

Q ss_pred             cccccccCCceeEEeeeecC-CcEEEE------EEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe
Q 011025          395 DENKLGQGGFGPVYKGTLAD-GKAIAV------KRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE  458 (495)
Q Consensus       395 ~~~~LG~G~fG~Vykg~~~~-g~~VaV------K~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  458 (495)
                      ..++||   ||.||+|.+.. ..+|||      |..+..  +.+...+|.+|..++..++|||+++.+++...
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            345676   99999999754 357888      766543  23445679999999999999999999988754

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=89.16  E-value=0.47  Score=47.33  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             ccccccCCceeEEeeeec-CCcEEEEEEcccCCh-------hhHHHHHHHHHHHHcCCC--CCcc-ceEEEEEeCCEEEE
Q 011025          396 ENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSG-------QGLQEFKNEVNLIAKLQH--KNLV-RLLGCCLEGQELLL  464 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~-------~~~~~f~~E~~~l~~l~H--~niv-~l~g~~~~~~~~~l  464 (495)
                      .+.||.|..+.||++... +++.++||.......       .....+..|..++..+.+  +..+ +++.+  ..+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            457899999999999753 467899998653211       123456778888887632  3333 44443  3445689


Q ss_pred             EEecCCCCC-HHHHH
Q 011025          465 IYEYMPNKS-LDVHL  478 (495)
Q Consensus       465 v~Ey~~~Gs-L~~~L  478 (495)
                      ||||+++.. +...+
T Consensus       113 vmE~l~g~~~~~~~l  127 (397)
T 2olc_A          113 VMEDLSHLKIARKGL  127 (397)
T ss_dssp             EECCCTTSEEHHHHH
T ss_pred             EEEeCCCcchHHHHH
Confidence            999997643 44444

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=88.46  E-value=1.7  Score=40.42  Aligned_cols=78  Identities=14%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             cccCCce-eEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecCCCCCHH
Q 011025          399 LGQGGFG-PVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYMPNKSLD  475 (495)
Q Consensus       399 LG~G~fG-~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~  475 (495)
                      +..|.-| .||+-... ++..+.||+-+.   ....++.+|...+..+. +--+-++++++..++..++|||++++.++.
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~  108 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAF  108 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHH
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcccc
Confidence            4445544 58876643 466788898763   23457888999888774 334567788888888999999999999887


Q ss_pred             HHHh
Q 011025          476 VHLF  479 (495)
Q Consensus       476 ~~L~  479 (495)
                      +...
T Consensus       109 ~~~~  112 (272)
T 4gkh_A          109 QVLE  112 (272)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7654

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=83.14  E-value=0.094  Score=34.68  Aligned_cols=7  Identities=57%  Similarity=0.776  Sum_probs=2.6

Q ss_pred             eeeeecc
Q 011025          327 FLWYRRR  333 (495)
Q Consensus       327 ~~~~rrr  333 (495)
                      ++++|||
T Consensus        32 ~~~~RRr   38 (44)
T 2ks1_B           32 GLFMRRR   38 (44)
T ss_dssp             HHHHHTT
T ss_pred             HHHhhhh
Confidence            3333333

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=81.07  E-value=6.2  Score=37.53  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             ccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCC---CccceEEEEE-eCCEEEEEEecCCC
Q 011025          396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHK---NLVRLLGCCL-EGQELLLIYEYMPN  471 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~-~~~~~~lv~Ey~~~  471 (495)
                      .+.++.|....||+.    |+.++||..+  .......+.+|..++..+.+.   .+.+.+.+.. ..+..++||||+++
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            345788888889877    5667888743  233456789999999998653   2445555554 23457899999999


Q ss_pred             CCHHHH
Q 011025          472 KSLDVH  477 (495)
Q Consensus       472 GsL~~~  477 (495)
                      ..|.+.
T Consensus        98 ~~l~~~  103 (306)
T 3tdw_A           98 QILGED  103 (306)
T ss_dssp             EECHHH
T ss_pred             eECchh
Confidence            988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-25
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-24
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-24
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-23
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-23
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-22
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	9e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-21
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-21
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-21
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-21
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-21
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-21
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-20
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-20
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-20
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-19
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-19
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-19
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-19
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	7e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-18
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	7e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-18
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-17
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-17
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	9e-17
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-16
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-16
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-16
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-15
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-14
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-14
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	7e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-13
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-13
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	5e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-12
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	7e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-11
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-09
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-08

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 9e-25
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
              +   ++G G FG VYKG      A+ +  ++  + Q LQ FKNEV ++ K +H N++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
             +G     Q L ++ ++    SL  HL  +     +   +    
Sbjct: 68  LFMGYSTAPQ-LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIAR 111

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
           +  +   ++G G FG V+ G   +   +A+K + R      ++F  E  ++ KL H  LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTI-REGAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVH 477
           +L G CLE   + L++E+M +  L  +
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDY 90

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-24
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
              +   +LG G FG V  G       +A+K +   S     EF  E  ++  L H+ LV
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLV 62

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           +L G C + + + +I EYM N  L  +L  +      +  L    
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCK 107

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 2e-23
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
                  +LG G FG V+ G       +AVK L + S      F  E NL+ +LQH+ LV
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLV 71

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           RL     +   + +I EYM N SL   L  
Sbjct: 72  RLYAVVTQE-PIYIITEYMENGSLVDFLKT 100

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.8 bits (243), Expect = 3e-23
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG---LQEFKNEVNLIAKLQ 445
              FSD  ++G G FG VY    + + + +A+K++S +  Q     Q+   EV  + KL+
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           H N ++  GC L      L+ EY    + D+  
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLE 106

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (241), Expect = 4e-23
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 384 RLALEATNHFSDENKLGQGGFGPVYKGTLA---DGKAIAVKRLSRTSGQG-LQEFKNEVN 439
           +L L+  N    + +LG G FG V +G          +A+K L + + +   +E   E  
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 440 LIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           ++ +L +  +VRL+G C + + L+L+ E      L   L G    + +      + 
Sbjct: 62  IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH 116

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (236), Expect = 3e-22
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 389 ATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGL-QEFKNEVNLIAKLQH 446
             + F   ++LG G  G V+K +    G  +A K +       +  +   E+ ++ +   
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
             +V   G      E+ +  E+M   SLD  L
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVL 95

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.9 bits (230), Expect = 9e-22
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
              + ++KLG G +G VY+G        +AVK L   + + ++EF  E  ++ +++H NL
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAVMKEIKHPNL 75

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           V+LLG C       +I E+M   +L  +L 
Sbjct: 76  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 105

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-21
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
            + +    +LG G FG VYK          A K +   S + L+++  E++++A   H N
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN 70

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI 494
           +V+LL        L ++ E+    ++D  +  L   L+     +  
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVC 116

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 2e-21
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
                   +G+G FG V  G    G  +AVK +   +    Q F  E +++ +L+H NLV
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLV 63

Query: 451 RLLGCCLEGQE-LLLIYEYMPNKSLDVHLF 479
           +LLG  +E +  L ++ EYM   SL  +L 
Sbjct: 64  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLR 93

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 93.2 bits (231), Expect = 2e-21
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           +H+    +LG G FG V++ T  A G   A K +        +  + E+  ++ L+H  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI 494
           V L     +  E+++IYE+M    L   +      +S    + Y+
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYM 130

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 2e-21
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 395 DENKLGQGGFGPVYKGTLAD---GKAIAVKRLSRTSGQG--LQEFKNEVNLIAKLQHKNL 449
           ++ +LG G FG V KG        K +AVK L   +       E   E N++ +L +  +
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           VR++G C E +  +L+ E      L+ +L 
Sbjct: 71  VRMIGIC-EAESWMLVMEMAELGPLNKYLQ 99

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 4e-21
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTSGQG-LQEFKNEVNLIAK 443
           N  S    LG G FG V + T            +AVK L  ++     +   +E+ +++ 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 444 L-QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           L  H N+V LLG C  G   L+I EY     L   L  
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR 120

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.4 bits (226), Expect = 4e-21
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 388 EATNHFSDE---------NKLGQGGFGPVYKGTLA----DGKAIAVKRL-SRTSGQGLQE 433
           EA   F+ E           +G G FG V  G L         +A+K L S  + +  ++
Sbjct: 14  EAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRD 73

Query: 434 FKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVH 477
           F +E +++ +  H N++ L G   +   +++I E+M N SLD  
Sbjct: 74  FLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSF 117

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (226), Expect = 4e-21
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKN 448
              ++   K+GQG  G VY    +A G+ +A+++++       +   NE+ ++ + ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLS-IKCYLLYIL 495
           +V  L   L G EL ++ EY+   SL   +    +    I       L
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECL 126

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 91.3 bits (226), Expect = 9e-21
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           +++    +LG G FG V++    A G+    K ++          KNE++++ +L H  L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           + L     +  E++LI E++    L   +      +S    + Y+ 
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMR 134

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 2e-20
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLV 450
                E KLGQG FG V+ GT      +A+K L   +    + F  E  ++ KL+H+ LV
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLV 75

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           +L       + + ++ EYM   SL   L G
Sbjct: 76  QLYAVV-SEEPIYIVTEYMSKGSLLDFLKG 104

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 2e-20
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 392 HFSDENKLGQGGFGPVYKGTLADGK----AIAVKRLSRTSGQG-LQEFKNEVNLIAKLQH 446
           HF     +G+G FG VY GTL D        AVK L+R +  G + +F  E  ++    H
Sbjct: 30  HF--NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87

Query: 447 KNLVRLLGCCLEGQ-ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
            N++ LLG CL  +   L++  YM +  L   +   + + ++K  + + L
Sbjct: 88  PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 137

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.4 bits (218), Expect = 5e-20
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQGLQ-EFKNEVNLIAK 443
           N+      +G+G FG V++              +AVK L   +   +Q +F+ E  L+A+
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 72

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLS 482
             + N+V+LLG C  G+ + L++EYM    L+  L  +S
Sbjct: 73  FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMS 111

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 6e-20
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 397 NKLGQGGFGPVYKGTL----ADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQHKNL 449
            KLG G FG V +G          ++AVK L     +  + + +F  EVN +  L H+NL
Sbjct: 14  EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL 73

Query: 450 VRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           +RL G  L    + ++ E  P  SL   L        +     Y +
Sbjct: 74  IRLYGVVLTP-PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV 118

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 8e-20
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSR-TSGQGLQEFKNEVNLIAK 443
              +   +LGQG FG VY+G             +A+K ++   S +   EF NE +++ +
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
               ++VRLLG   +GQ  L+I E M    L  +L 
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 115

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHK 447
            + +   + LG G F  V         K +A+K +++ + +G +   +NE+ ++ K++H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           N+V L      G  L LI + +    L   +
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRI 98

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 3e-19
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 8/98 (8%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAK 443
            +      LG G FG V   T            +AVK L   +     +   +E+ ++ +
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 444 L-QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           L  H+N+V LLG C     + LI+EY     L  +L  
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRS 134

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 3e-19
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADG---KAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-Q 445
           N    ++ +G+G FG V K  +         A+KR+    S    ++F  E+ ++ KL  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFG 480
           H N++ LLG C     L L  EY P+ +L   L  
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRK 104

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 6e-19
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 396 ENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGC 455
           +  +G+G FG V++G    G+ +AVK  S    +     + E+     L+H+N++  +  
Sbjct: 8   QESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAA 65

Query: 456 CLEGQ----ELLLIYEYMPNKSLDVHLFGLSLSL 485
             +      +L L+ +Y  + SL  +L   ++++
Sbjct: 66  DNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTV 99

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 6e-19
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQ 445
                   +G+G FG V++G          A+A+K     +   ++E F  E   + +  
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           H ++V+L+G   E   + +I E      L   L     SL +   +LY  
Sbjct: 67  HPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAY 115

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 7e-19
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQHK 447
            F     LG+G F  V     LA  +  A+K L +        +     E +++++L H 
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
             V+L     + ++L     Y  N  L  ++ 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR 100

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 396 ENKLGQGGFGPVYKGTLAD-GKAIAVKRLS--RTSGQGLQEFKNEVNLIAKLQHKNLVRL 452
           + ++G+G F  VYKG   +    +A   L   + +    Q FK E  ++  LQH N+VR 
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 73

Query: 453 LGCCLE----GQELLLIYEYMPNKSLDVHLF 479
                      + ++L+ E M + +L  +L 
Sbjct: 74  YDSWESTVKGKKCIVLVTELMTSGTLKTYLK 104

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 2e-18
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADG-----KAIAVKRLSRTSGQG-LQEFKNEVNLIAKL 444
           +  + +  +G G FG VYKG L          +A+K L     +    +F  E  ++ + 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
            H N++RL G   + + +++I EYM N +LD  L       S+   +  + 
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLR 117

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQ- 445
           N FS    +G+GGFG VY    AD GK  A+K L +      QG     NE  +++ +  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 446 --HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF--GLSLSLSIKCYLLYIL 495
                +V +        +L  I + M    L  HL   G+     ++ Y   I+
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEII 117

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 7e-18
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 398 KLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCC 456
            LG+G FG V++    +  K    K + +  G      K E++++   +H+N++ L    
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFV-KVKGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 457 LEGQELLLIYEYMPNKSLDVHLFGLSLSLS---IKCYLLYIL 495
              +EL++I+E++    +   +   +  L+   I  Y+  + 
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVC 112

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 7e-18
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-FKNEVNLIAKLQHKN 448
             +     LG+G +G V         +A+AVK +         E  K E+ +   L H+N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           +V+  G   EG    L  EY     L   + 
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIE 95

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (200), Expect = 8e-18
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNL 449
           +     +G G +G   K    +DGK +  K L   S      Q   +EVNL+ +L+H N+
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 65

Query: 450 VRLLGCCLE--GQELLLIYEYMPNKSLDVHLF 479
           VR     ++     L ++ EY     L   + 
Sbjct: 66  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 97

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 80.9 bits (199), Expect = 1e-17
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG---LQEFKNEVNLIAKLQ 445
           ++ +     LG GG   V+    L   + +AVK L     +       F+ E    A L 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 446 HKNLVRLLGCCLE----GQELLLIYEYMPNKSLDVHL 478
           H  +V +          G    ++ EY+   +L   +
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIV 102

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 1e-17
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 387 LEATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAKL 444
            +    +++ + +G+G +G V       +   +A+K++S    Q   Q    E+ ++ + 
Sbjct: 4   FDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF 63

Query: 445 QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGL 481
           +H+N++ +           +   Y+    +   L+ L
Sbjct: 64  RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKL 100

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 9e-17
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQH 446
             F     LG+G FG VY          +A+K L +          + + EV + + L+H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            N++RL G   +   + LI EY P  ++   L
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYREL 97

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 1e-16
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS------GQGLQEFKNEVNLIAK 443
           +++    +LG G F  V K    + G   A K + +        G   ++ + EV+++ +
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 444 LQHKNLVRLLGCCLEGQELLLIYEYMPNKSLD 475
           +QH N++ L        +++LI E +    L 
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELF 101

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.0 bits (191), Expect = 1e-16
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKN 448
             +    K+G+G +G VYK     G+  A+K  RL +           E++++ +L+H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
           +V+L       + L+L++E++      +   
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDV 92

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 1e-16
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 393 FSDENKLGQGGFGPVYKGTLAD-GKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVR 451
           ++D   +G G FG VY+  L D G+ +A+K++ +      +    E+ ++ KL H N+VR
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVR 77

Query: 452 LLGCCLEGQE------LLLIYEYMPNKSLDVHLFGL 481
           L        E      L L+ +Y+P     V     
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS 113

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 391 NHFSDENKLGQGGFGPVYKGTL--------ADGKAIAVKRLSR-TSGQGLQEFKNEVNLI 441
           +       LG+G FG V                  +AVK L    + + L +  +E+ ++
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 442 AKL-QHKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
             + +HKN++ LLG C +   L +I EY    +L  +L 
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-16
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 393 FSDENKLGQGGFGPVYKGT-LADGK----AIAVKRLSR-TSGQGLQEFKNEVNLIAKLQH 446
           F     LG G FG VYKG  + +G+     +A+K L   TS +  +E  +E  ++A + +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSL 474
            ++ RLLG CL    + LI + MP   L
Sbjct: 71  PHVCRLLGICLTS-TVQLITQLMPFGCL 97

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQH 446
             F     LG G FG V+      +G+  A+K L +      + ++   +E  +++ + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVH 477
             ++R+ G   + Q++ +I +Y+    L   
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSL 94

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 397 NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE-----FKNEVNLIAKLQHKNLV 450
           + LG+G F  VYK       + +A+K++        ++        E+ L+ +L H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 451 RLLGCCLEGQELLLIYEYMPNKSLDVH 477
            LL        + L++++M      + 
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVII 90

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 3e-15
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHKN 448
           +F    K+G+G +G VYK      G+ +A+K  RL   +         E++L+ +L H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           +V+LL       +L L++E++               + +     Y+ 
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLF 109

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 1e-14
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL 444
           E    + D   +G G +G V        G  +A+K+L R   S    +    E+ L+  +
Sbjct: 15  EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM 74

Query: 445 QHKNLVRLLGCCLEGQ------ELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           +H+N++ LL      +      +  L+  +M      +          I+  +  +L
Sbjct: 75  RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQML 131

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAK-LQ 445
             F     LG+G FG V+        +  A+K L +        ++    E  +++   +
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 446 HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           H  L  +       + L  + EY+    L  H+
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHI 94

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 392 HFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGL---------QEFKNEVNLI 441
           ++  +  LG+G    V +       K  AVK +  T G            +    EV+++
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 442 AKLQ-HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            K+  H N+++L           L+++ M    L  +L
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYL 101

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 6e-14
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNL 449
           N +    K+G G FG +Y GT +A G+ +A+K     +     +   E  +   +Q    
Sbjct: 7   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVG 64

Query: 450 VRLLG-CCLEGQELLLIYEYMPNKSLDVHL 478
           +  +  C  EG   +++ E +     D+  
Sbjct: 65  IPTIRWCGAEGDYNVMVMELLGPSLEDLFN 94

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 7e-14
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 391 NHFSDENKLGQGGFGPVYKGT------LADGKAIAVKRLSRTSGQG-LQEFKNEVNLIAK 443
           +       LG+G FG V +         A  + +AVK L   +     +   +E+ ++  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 444 -LQHKNLVRLLGCCLE-GQELLLIYEYMPNKSLDVHLFG 480
              H N+V LLG C + G  L++I E+    +L  +L  
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 111

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 7e-14
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQE------FKNEVNLIAK 443
           + +     LG GGFG VY G  ++D   +A+K + +       E         EV L+ K
Sbjct: 4   SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 63

Query: 444 LQ--HKNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
           +      ++RLL         +LI E           
Sbjct: 64  VSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDF 100

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKN 448
           + +    KLG+G +  V++   + + + + VK L        ++ K E+ ++  L+   N
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPN 91

Query: 449 LVRLLGCCLE--GQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           ++ L     +   +   L++E++ N         L+    I+ Y+  IL
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDY-DIRFYMYEIL 139

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 2e-13
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQH 446
           N F     LG+G FG V      A G+  A+K L +    +   +     E  ++   +H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
             L  L         L  + EY     L  HL
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHL 96

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 3e-13
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHK 447
             + +   +G G  G V         + +A+K+LSR   +    +    E+ L+  + HK
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 448 NLVRLLGCCL------EGQELLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYIL 495
           N++ LL          E Q++ L+ E M      V    L     +   L  +L
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHER-MSYLLYQML 129

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 5e-13
 Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQG--LQEFKNEVNLIAKLQHK 447
           + +    K+GQG FG V+K      G+ +A+K++   + +         E+ ++  L+H+
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 448 NLVRLLGCCLEGQE--------LLLIYEYMPNKSLDVHL 478
           N+V L+  C             + L++++  +    +  
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS 108

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 5e-13
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 388 EATNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKL 444
           E    + + + +G G +G V        G  +AVK+LSR   S    +    E+ L+  +
Sbjct: 15  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM 74

Query: 445 QHKNLVRLLGCCLEGQEL-----LLIYEYMPNKSLD 475
           +H+N++ LL      + L     + +  ++    L+
Sbjct: 75  KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLN 110

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-12
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVK--RLSRTSGQGLQEFKNEVNLIAKLQHK 447
             +    K+G+G +G V+K       + +A+K  RL             E+ L+ +L+HK
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 448 NLVRLLGCCLEGQELLLIYEYMPNKSLDVH 477
           N+VRL       ++L L++E+         
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYF 91

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH-KN 448
            H+    ++G+G FG +++GT L + + +A+K   R S     + ++E      L     
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTG 62

Query: 449 LVRLLGCCLEGQELLLIYEYMPNKSLDVH 477
           +  +     EG   +L+ + +     D+ 
Sbjct: 63  IPNVYYFGQEGLHNVLVIDLLGPSLEDLL 91

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLL 453
              LG G  G V +       +  A+K L         + + EV L  +  Q  ++VR++
Sbjct: 17  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIV 71

Query: 454 GCC----LEGQELLLIYEYMPNKSLDVHL 478
                     + LL++ E +    L   +
Sbjct: 72  DVYENLYAGRKCLLIVMECLDGGELFSRI 100

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 391 NHFSDENKLGQGGFGPVYKGTLA----DGKAIAVKRLSRTS----GQGLQEFKNEVNLIA 442
            +F     LG G +G V+          GK  A+K L + +     +  +  + E  ++ 
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 443 KLQHK-NLVRLLGCCLEGQELLLIYEYMPNKSLDVHL 478
            ++    LV L        +L LI +Y+    L  HL
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHL 120

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 1e-11
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 389 ATNHFSDENKLGQGGFGPVYKGT--LADGKAIAVKRLSRTSGQG--LQEFKNEVNLIAKL 444
           A   +    ++G+G +G V+K       G+ +A+KR+   +G+         EV ++  L
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 445 ---QHKNLVRLLGCCLEGQE-----LLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI 494
              +H N+VRL   C   +      L L++E++               +  +     +
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMM 122

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSR---TSGQGLQEFKNEVNLIAKLQH 446
           + F     LG G FG V        G   A+K L +      + ++   NE  ++  +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 447 KNLVRLLGCCLEGQELLLIYEYMPNKSLDVHLF 479
             LV+L     +   L ++ EY+    +  HL 
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR 133

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 14/90 (15%)

Query: 397 NKLGQGGFGPVYKGTLADGKAIAVK--RLSRTSGQ--------GLQEFKNEVNLIAKLQH 446
             +G+G    V+           VK  ++  TS +        G   F       A+ + 
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 447 KNLVRLLGCC----LEGQELLLIYEYMPNK 472
           + L +L G         +   ++ E +  K
Sbjct: 66  RALQKLQGLAVPKVYAWEGNAVLMELIDAK 95

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 396 ENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLG 454
             KLG G F  V+    + +   +A+K +        +  ++E+ L+ ++   +  +   
Sbjct: 18  VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-TEAAEDEIKLLQRVNDADNTKEDS 76

Query: 455 CCLEGQELLLIYEYMPNKSLDVH 477
                   LL +      +    
Sbjct: 77  MGANHILKLLDHFNHKGPNGVHV 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.63
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.61
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.57
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.56
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.55
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.55
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.55
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.55
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.54
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.53
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.51
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.51
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.51
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.51
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.51
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.5
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.49
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.49
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.49
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.49
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.49
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.48
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.48
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.48
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.47
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.46
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.45
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.43
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.43
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.43
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.42
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.41
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.41
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.39
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.39
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.39
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.38
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.36
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.36
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.35
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.34
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.33
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.33
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.31
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.28
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.26
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.25
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.25
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.24
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.23
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.22
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.2
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.16
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.16
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.11
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.03
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.02
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.95
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.35
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.28
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	92.76

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-16  Score=149.84  Aligned_cols=94  Identities=27%  Similarity=0.458  Sum_probs=83.6

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|...++||+|+||.||+|.+.+++.||||.++... ...++|.+|+.++.+++|||||+++|++..++..++||||++
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            4678889999999999999998888899999997543 445789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCCH
Q 011025          471 NKSLDVHLFGLSLSL  485 (495)
Q Consensus       471 ~GsL~~~L~~~~~~~  485 (495)
                      +|+|.+++.......
T Consensus        84 ~g~L~~~l~~~~~~~   98 (263)
T d1sm2a_          84 HGCLSDYLRTQRGLF   98 (263)
T ss_dssp             TCBHHHHHHTTTTCC
T ss_pred             CCcHHHHhhccccCC
Confidence            999999998755443

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.8e-16  Score=146.83  Aligned_cols=93  Identities=29%  Similarity=0.455  Sum_probs=83.2

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMP  470 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~  470 (495)
                      ++|+..++||+|+||.||+|+.++++.||||.++... ...++|.+|+.++.+++|||||+++|++..+++.++||||++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            5788899999999999999999888899999998643 345789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCCCC
Q 011025          471 NKSLDVHLFGLSLS  484 (495)
Q Consensus       471 ~GsL~~~L~~~~~~  484 (495)
                      +|+|.+++......
T Consensus        83 ~g~l~~~~~~~~~~   96 (258)
T d1k2pa_          83 NGCLLNYLREMRHR   96 (258)
T ss_dssp             TEEHHHHHHSGGGC
T ss_pred             CCcHHHhhhccccC
Confidence            99999998765433

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=145.84  Aligned_cols=104  Identities=23%  Similarity=0.380  Sum_probs=89.3

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++. ..+|+.||||.++.......+.+.+|+.++++++|||||++++++..++..++||||+
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            468888999999999999998 4579999999998655555678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          470 PNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      ++|+|.+++........ ...++.|+
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi  125 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCREC  125 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHH
Confidence            99999999987655444 45555554

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=143.79  Aligned_cols=95  Identities=25%  Similarity=0.468  Sum_probs=78.2

Q ss_pred             CCccccc-ccccCCceeEEeeeec---CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDEN-KLGQGGFGPVYKGTLA---DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~-~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      +++...+ +||+|+||.||+|...   ++..||||.++.. .....++|.+|+.++.+++|||||+++|++. .+..+||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~-~~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeec-cCeEEEE
Confidence            4566666 4999999999999753   3557999999754 3455788999999999999999999999986 4568999


Q ss_pred             EecCCCCCHHHHHhcCCCCHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      |||+++|+|.+++...+...+
T Consensus        87 mE~~~~g~L~~~l~~~~~~l~  107 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKREEIP  107 (285)
T ss_dssp             EECCTTEEHHHHHTTCTTTSC
T ss_pred             EEeCCCCcHHHHhhccccCCC
Confidence            999999999999976554433

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=146.14  Aligned_cols=105  Identities=25%  Similarity=0.425  Sum_probs=88.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .+.|...++||+|+||.||+|.. .+|+.||||+++....+..+.|.+|+.++++++|||||++++++..++..++||||
T Consensus        11 ~d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          11 EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             ccCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            35678889999999999999984 56899999999877666778899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC--CCHH-HHHHHHHh
Q 011025          469 MPNKSLDVHLFGLS--LSLS-IKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~--~~~~-~~~~l~~~  494 (495)
                      +++|+|.+++....  .... ...++.|+
T Consensus        91 ~~~g~L~~~~~~~~~~l~e~~~~~i~~qi  119 (288)
T d2jfla1          91 CAGGAVDAVMLELERPLTESQIQVVCKQT  119 (288)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999986432  3333 44554544

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1e-15  Score=147.46  Aligned_cols=91  Identities=31%  Similarity=0.525  Sum_probs=81.1

Q ss_pred             hcCCcccccccccCCceeEEeeeec-CCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA-DGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~-~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ..++|...++||+|+||.||+|... +++.||||.++... ...++|.+|+.++++++|||||+++|++..++..++|||
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E   93 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   93 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEee
Confidence            4567888899999999999999964 58899999997543 346789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhc
Q 011025          468 YMPNKSLDVHLFG  480 (495)
Q Consensus       468 y~~~GsL~~~L~~  480 (495)
                      |+++|+|.++|..
T Consensus        94 ~~~~g~l~~~l~~  106 (287)
T d1opja_          94 FMTYGNLLDYLRE  106 (287)
T ss_dssp             CCTTCBHHHHHHH
T ss_pred             cccCcchHHHhhh
Confidence            9999999999975

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.8e-15  Score=145.18  Aligned_cols=96  Identities=27%  Similarity=0.462  Sum_probs=80.5

Q ss_pred             CCcccccccccCCceeEEeeeec-CC---cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DG---KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g---~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||.||+|... ++   ..||||.+... +.+..++|.+|+.++++++|||||+++|++..++..++|
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            45677789999999999999853 23   26899998754 455677899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCCCCHH
Q 011025          466 YEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      |||+++|+|.+++.......+
T Consensus       106 ~Ey~~~g~L~~~~~~~~~~l~  126 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQNDGQFT  126 (299)
T ss_dssp             EECCTTEEHHHHHHTTTTCSC
T ss_pred             EEecCCCcceeeeccccCCCC
Confidence            999999999999987554333

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.5e-15  Score=142.67  Aligned_cols=104  Identities=23%  Similarity=0.344  Sum_probs=85.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC------hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS------GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++++..      ....+.|.+|+.++.+++|||||++++++...+..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5788899999999999999995 579999999996432      123678999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      |||||+++|+|.++|.... .... ...++.++
T Consensus        90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi  122 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKESLTEEEATEFLKQI  122 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEEEcCCCccccchhccccccchhHHHHHHHHH
Confidence            9999999999999996532 3333 44444443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-15  Score=143.22  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=83.8

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||++.. .+|+.||||+++... .+..+.+.+|+.++.+++|||||++++++..++..+|||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            5688899999999999999984 578999999997543 33456799999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-CC-HHHHHHHHHh
Q 011025          469 MPNKSLDVHLFGLS-LS-LSIKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~-~~-~~~~~~l~~~  494 (495)
                      +++|+|.++|.... .. .....++.|+
T Consensus        85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi  112 (271)
T d1nvra_          85 CSGGELFDRIEPDIGMPEPDAQRFFHQL  112 (271)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999997643 22 3344555554

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.54  E-value=8e-15  Score=145.04  Aligned_cols=92  Identities=26%  Similarity=0.429  Sum_probs=83.7

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+|+.||||.+........+.+.+|+.++.+++|||||++++++...+..+|||||+
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            4788899999999999999984 579999999998776666788999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++|+|.++|....
T Consensus       106 ~gg~L~~~l~~~~  118 (350)
T d1koaa2         106 SGGELFEKVADEH  118 (350)
T ss_dssp             CSCBHHHHHTCTT
T ss_pred             CCCCHHHHHHhhc
Confidence            9999999996543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.8e-15  Score=148.13  Aligned_cols=105  Identities=19%  Similarity=0.237  Sum_probs=87.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||+|.. .+|+.||+|.++.. .+...+.+.+|+.++++++|||||++++++..++..++|||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            56788999999999999999994 57899999999754 34446789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcC-CCCHH-HHHHHHHh
Q 011025          468 YMPNKSLDVHLFGL-SLSLS-IKCYLLYI  494 (495)
Q Consensus       468 y~~~GsL~~~L~~~-~~~~~-~~~~l~~~  494 (495)
                      |+++|+|.++|... ..... .+..+.|+
T Consensus        85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qi  113 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGRIPEQILGKVSIAV  113 (322)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHH
Confidence            99999999999753 23333 44444444

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8e-15  Score=140.25  Aligned_cols=93  Identities=32%  Similarity=0.535  Sum_probs=78.8

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .++|...++||+|+||.||+|+..  ..||||+++..  +.+..+.|.+|+.++.+++|||||+++|++.. ++.++|||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEe
Confidence            467888899999999999999863  36999999744  45567899999999999999999999998754 56799999


Q ss_pred             cCCCCCHHHHHhcCCCCH
Q 011025          468 YMPNKSLDVHLFGLSLSL  485 (495)
Q Consensus       468 y~~~GsL~~~L~~~~~~~  485 (495)
                      |+++|+|.++|+......
T Consensus        84 y~~~g~L~~~l~~~~~~~  101 (276)
T d1uwha_          84 WCEGSSLYHHLHIIETKF  101 (276)
T ss_dssp             CCCEEEHHHHHHTSCCCC
T ss_pred             cCCCCCHHHHHhhccCCC
Confidence            999999999997654333

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.9e-15  Score=140.03  Aligned_cols=90  Identities=34%  Similarity=0.474  Sum_probs=78.5

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...++||+|+||.||+|.++++..||||.++... ...++|.+|+.++.+++|||||+++|++. .++.++||||+
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~   89 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM   89 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeC
Confidence            45788889999999999999998888899999997543 34578999999999999999999999875 45679999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.+++...
T Consensus        90 ~~g~L~~~~~~~  101 (272)
T d1qpca_          90 ENGSLVDFLKTP  101 (272)
T ss_dssp             TTCBHHHHTTSH
T ss_pred             CCCcHHHHHhhc
Confidence            999999988653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=138.56  Aligned_cols=90  Identities=26%  Similarity=0.399  Sum_probs=77.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe--CCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE--GQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv  465 (495)
                      ++|...+.||+|+||.||++.. .+|+.||||.+...  +....+.|.+|+.++.+++|||||++++++..  .+..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5688899999999999999984 57899999999754  34456789999999999999999999999865  4557999


Q ss_pred             EecCCCCCHHHHHhc
Q 011025          466 YEYMPNKSLDVHLFG  480 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~  480 (495)
                      |||+++|+|.+++..
T Consensus        84 mEy~~~g~L~~~i~~   98 (269)
T d2java1          84 MEYCEGGDLASVITK   98 (269)
T ss_dssp             EECCTTEEHHHHHHH
T ss_pred             EecCCCCcHHHHHHh
Confidence            999999999999863

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.51  E-value=1.8e-14  Score=142.63  Aligned_cols=104  Identities=22%  Similarity=0.340  Sum_probs=87.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||++.. .+|+.||||+++.......+.+.+|+.++.+++|||||++++++..++..+|||||+
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            5688899999999999999984 579999999998766666678999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCCC--CHH-HHHHHHHh
Q 011025          470 PNKSLDVHLFGLSL--SLS-IKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~~--~~~-~~~~l~~~  494 (495)
                      ++|+|.+++.....  ... ....+.++
T Consensus       109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi  136 (352)
T d1koba_         109 SGGELFDRIAAEDYKMSEAEVINYMRQA  136 (352)
T ss_dssp             CCCBHHHHTTCTTCCBCHHHHHHHHHHH
T ss_pred             CCChHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999998876542  232 44444444

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.1e-14  Score=141.41  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=81.4

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      .+.|...++||+|+||.||++.. .+|+.||||++.... ......+.+|+.++.+++|||||++++++..++..+||||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            45688899999999999999984 468999999997543 2334568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          468 YMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       468 y~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      |+++|+|.++|.... .... ...++.++
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi  116 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQV  116 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHH
Confidence            999999999997543 2332 44444443

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-14  Score=138.24  Aligned_cols=104  Identities=26%  Similarity=0.418  Sum_probs=85.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+++.||+|.+.+..   ....+.+.+|+.++.+++|||||++++++..++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            4688889999999999999995 468899999996432   234677999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CCCH-HHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGL-SLSL-SIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~-~~~~-~~~~~l~~~  494 (495)
                      ||+++|+|.++|... .... ....++.|+
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi  115 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITEL  115 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHH
Confidence            999999999999753 2233 344445444

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.1e-14  Score=139.11  Aligned_cols=104  Identities=18%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             cCCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      .++|...++||+|+||.||++.. .+|+.||||.++... .....+.+|+.++..++|||||++++++..++..+|||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            35788899999999999999984 568899999998654 3345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCCC--CH-HHHHHHHHh
Q 011025          469 MPNKSLDVHLFGLSL--SL-SIKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~~--~~-~~~~~l~~~  494 (495)
                      +++|+|.++|.....  .. ....++.++
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi  111 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQV  111 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            999999999986542  22 244455554

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=136.81  Aligned_cols=85  Identities=29%  Similarity=0.423  Sum_probs=70.7

Q ss_pred             cccccCCceeEEeeeec---CCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecCCC
Q 011025          397 NKLGQGGFGPVYKGTLA---DGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYMPN  471 (495)
Q Consensus       397 ~~LG~G~fG~Vykg~~~---~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~~  471 (495)
                      ++||+|+||.||+|.+.   .++.||||+++..  ++...++|.+|+.++.+++|||||+++|++. .+..+|||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~-~~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEec-cCCEEEEEEcCCC
Confidence            47999999999999853   3468999999753  3344678999999999999999999999985 4567899999999


Q ss_pred             CCHHHHHhcCC
Q 011025          472 KSLDVHLFGLS  482 (495)
Q Consensus       472 GsL~~~L~~~~  482 (495)
                      |+|.++++...
T Consensus        92 g~L~~~l~~~~  102 (277)
T d1xbba_          92 GPLNKYLQQNR  102 (277)
T ss_dssp             EEHHHHHHHCT
T ss_pred             CcHHHHHhhcc
Confidence            99999998644

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=139.47  Aligned_cols=90  Identities=32%  Similarity=0.470  Sum_probs=79.2

Q ss_pred             cCCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++|...+.||+|+||+||+|..++++.||||.++.. ....++|.+|+.++.+++|||||+++|++. .++.++||||+
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~   93 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   93 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEec
Confidence            3578889999999999999999888889999999754 344578999999999999999999999884 56689999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|..++...
T Consensus        94 ~~g~l~~~~~~~  105 (285)
T d1fmka3          94 SKGSLLDFLKGE  105 (285)
T ss_dssp             TTCBHHHHHSHH
T ss_pred             CCCchhhhhhhc
Confidence            999999998753

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=137.60  Aligned_cols=96  Identities=29%  Similarity=0.503  Sum_probs=81.3

Q ss_pred             CCcccccccccCCceeEEeeeecCC-----cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADG-----KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g-----~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      +.|+..++||+|+||.||+|.+...     ..||||.++.. +.....+|.+|+.++.+++|||||+++|++...+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4678889999999999999986432     36999999754 34456689999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhcCCCCHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      |+||+++|+|.+++.......+
T Consensus        87 v~e~~~~~~l~~~~~~~~~~~~  108 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDGEFS  108 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSC
T ss_pred             EEEecccCcchhhhhccccccc
Confidence            9999999999998876554444

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.49  E-value=4e-14  Score=135.40  Aligned_cols=104  Identities=19%  Similarity=0.228  Sum_probs=84.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCCh---------hhHHHHHHHHHHHHcCC-CCCccceEEEEEeC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSG---------QGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG  459 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~---------~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  459 (495)
                      ++|...++||+|+||+||++.. .+|+.+|||+++....         ...+.+.+|+.++.+++ ||||+++++++..+
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5788899999999999999984 5789999999975321         12346889999999996 99999999999999


Q ss_pred             CEEEEEEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          460 QELLLIYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      +..+|||||+++|+|.++|+...  .....+.++.|+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi  119 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRAL  119 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999999996432  223345555444

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-14  Score=134.92  Aligned_cols=101  Identities=25%  Similarity=0.388  Sum_probs=80.2

Q ss_pred             ccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe----CCEEEEEE
Q 011025          394 SDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE----GQELLLIY  466 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~  466 (495)
                      ...++||+|+||.||+|.. .+++.||+|.+...  .....+.|.+|+.++++++|||||++++++..    ....++||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            4566899999999999985 46889999998643  34556789999999999999999999999865    34579999


Q ss_pred             ecCCCCCHHHHHhcC-CCCHH-HHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGL-SLSLS-IKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~-~~~~~-~~~~l~~~  494 (495)
                      ||+++|+|.++|... ..... ...++.++
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi  121 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQI  121 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHH
Confidence            999999999999753 23333 34444444

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-14  Score=138.98  Aligned_cols=104  Identities=20%  Similarity=0.283  Sum_probs=85.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...+.||+|+||.||++.. .+|+.||||++++.   .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            4688899999999999999985 57899999999743   2234578999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-CCH-HHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS-LSL-SIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~-~~~-~~~~~l~~~  494 (495)
                      ||+++|+|.+++.... ... ....++.|+
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi  117 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEI  117 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHH
Confidence            9999999999987532 233 344444443

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.1e-14  Score=136.93  Aligned_cols=93  Identities=31%  Similarity=0.506  Sum_probs=77.8

Q ss_pred             ccccccCCceeEEeeeecCC----cEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe-CCEEEEEEecC
Q 011025          396 ENKLGQGGFGPVYKGTLADG----KAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE-GQELLLIYEYM  469 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~~~g----~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~Ey~  469 (495)
                      .++||+|+||+||+|.+.++    ..||||+++.. +.+..++|.+|+.++++++||||++++|++.. +...++||||+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            56899999999999996432    36899999753 55667889999999999999999999999876 46889999999


Q ss_pred             CCCCHHHHHhcCCCCHHHH
Q 011025          470 PNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       470 ~~GsL~~~L~~~~~~~~~~  488 (495)
                      ++|+|.++++.......+.
T Consensus       112 ~~g~l~~~~~~~~~~~~~~  130 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVK  130 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHH
T ss_pred             ecCchhhhhccccccchHH
Confidence            9999999998766554433

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=138.01  Aligned_cols=88  Identities=33%  Similarity=0.500  Sum_probs=75.5

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-CEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-QELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~Ey~  469 (495)
                      ++|...++||+|+||.||+|.. .|..||||.++..  ...++|.+|+.++++++||||++++|++..+ +..++||||+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEecc
Confidence            4577788999999999999998 5789999999753  3457899999999999999999999998654 5679999999


Q ss_pred             CCCCHHHHHhcC
Q 011025          470 PNKSLDVHLFGL  481 (495)
Q Consensus       470 ~~GsL~~~L~~~  481 (495)
                      ++|+|.++|+..
T Consensus        84 ~~g~L~~~l~~~   95 (262)
T d1byga_          84 AKGSLVDYLRSR   95 (262)
T ss_dssp             TTEEHHHHHHHH
T ss_pred             CCCCHHHHHHhc
Confidence            999999999754

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=3.5e-14  Score=137.92  Aligned_cols=104  Identities=27%  Similarity=0.453  Sum_probs=84.2

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      +.|+..++||+|+||.||+|. ..+|+.||||.++...   ....+.|.+|+.++.+++|||||++++++..++..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            348888999999999999998 4578999999997543   334567999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      ||+++|+|..++.... .... ...++.++
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi  124 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGA  124 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHH
Confidence            9999999987765432 2333 44444443

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.6e-14  Score=138.44  Aligned_cols=98  Identities=29%  Similarity=0.507  Sum_probs=84.7

Q ss_pred             HHHHhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEE
Q 011025          385 LALEATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCL  457 (495)
Q Consensus       385 ~l~~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  457 (495)
                      +++.++++|...++||+|+||.||+|...      +++.||||+++... .+..++|.+|+.++++++||||+++++++.
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            34456778999999999999999999853      35789999997543 344678999999999999999999999999


Q ss_pred             eCCEEEEEEecCCCCCHHHHHhcCC
Q 011025          458 EGQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       458 ~~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..+..++++||+++|+|.++|+...
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~  111 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMS  111 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcC
Confidence            9999999999999999999997543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.1e-14  Score=136.83  Aligned_cols=91  Identities=33%  Similarity=0.562  Sum_probs=76.3

Q ss_pred             CCcccccccccCCceeEEeeeec-CCc--EEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA-DGK--AIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~-~g~--~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||.||+|... +|.  .||||.++.. +.+..++|.+|+.++.++ +|||||+++|++...+..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            56788899999999999999864 344  5788988644 344567899999999998 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhcC
Q 011025          466 YEYMPNKSLDVHLFGL  481 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~  481 (495)
                      |||+++|+|.++|+..
T Consensus        90 ~ey~~~g~L~~~l~~~  105 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKS  105 (309)
T ss_dssp             ECCCTTCBHHHHHHTT
T ss_pred             EEecCCCcHHHHHhhc
Confidence            9999999999999764

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.7e-14  Score=138.02  Aligned_cols=104  Identities=24%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++++.   .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            5688899999999999999984 57999999999753   2334678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCC-CC-HHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLS-LS-LSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~-~~-~~~~~~l~~~  494 (495)
                      ||+++|+|.+++.... .. ...+.+++++
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qi  114 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEI  114 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHH
Confidence            9999999999997543 23 3356566655

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=8.9e-14  Score=135.49  Aligned_cols=104  Identities=21%  Similarity=0.313  Sum_probs=85.6

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++++.   .....+.+.+|+.+++.++|||||++++++..++..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            4688889999999999999994 56999999999743   2344678999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcCCC-CHH-HHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLSL-SLS-IKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~-~~~-~~~~l~~~  494 (495)
                      ||+++|+|..++..... ... .+.++.++
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi  113 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEV  113 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             eecCCccccccccccccccccHHHHHHHHH
Confidence            99999999999875442 322 34444444

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=133.36  Aligned_cols=94  Identities=22%  Similarity=0.374  Sum_probs=75.4

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHH--HHHHHHcCCCCCccceEEEEEeCC----EEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKN--EVNLIAKLQHKNLVRLLGCCLEGQ----ELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~--E~~~l~~l~H~niv~l~g~~~~~~----~~~l  464 (495)
                      +++.+.++||+|+||.||+|++ +|+.||||.++...   .+++..  |+..+.+++|||||+++|++...+    .+++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            3566788999999999999997 68999999997432   334444  455556789999999999998643    5799


Q ss_pred             EEecCCCCCHHHHHhcCCCCHHHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLSIK  488 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~~~  488 (495)
                      ||||+++|+|.++|+.....+...
T Consensus        79 v~Ey~~~g~L~~~l~~~~l~~~~~  102 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRYTVTVEGM  102 (303)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHH
T ss_pred             EEecccCCCHHHHHhcCCCCHHHH
Confidence            999999999999999877666543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=1.3e-13  Score=131.61  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=84.0

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC---hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC----E
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS---GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ----E  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~  461 (495)
                      .++|...+.||+|+||.||++. ..+|+.||||.++...   .+..+.|.+|+.++.+++|||||++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            3568889999999999999998 4679999999997542   344567999999999999999999999987643    3


Q ss_pred             EEEEEecCCCCCHHHHHhcCC-CCH-HHHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS-LSL-SIKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~-~~~-~~~~~l~~~  494 (495)
                      .+|||||+++|+|.+++.... ... ....++.|+
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi  120 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADA  120 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHH
Confidence            799999999999999986532 233 345555554

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=135.01  Aligned_cols=104  Identities=20%  Similarity=0.354  Sum_probs=83.2

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHHHHHHHH-cCCCCCccceEEEEEeCCEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKNEVNLIA-KLQHKNLVRLLGCCLEGQELLLI  465 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~lv  465 (495)
                      ++|...++||+|+||+||+|.. .+|+.||||++++..   ....+.+..|..++. .++|||||++++++..++..++|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5788899999999999999984 568999999997432   334566778877765 68999999999999999999999


Q ss_pred             EecCCCCCHHHHHhcCC-CCH-HHHHHHHHh
Q 011025          466 YEYMPNKSLDVHLFGLS-LSL-SIKCYLLYI  494 (495)
Q Consensus       466 ~Ey~~~GsL~~~L~~~~-~~~-~~~~~l~~~  494 (495)
                      |||+++|+|.++|.... ... ....++.++
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi  112 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEI  112 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHH
Confidence            99999999999997533 332 244444443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.3e-14  Score=134.90  Aligned_cols=91  Identities=32%  Similarity=0.501  Sum_probs=79.8

Q ss_pred             cCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQEL  462 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  462 (495)
                      .++|...++||+|+||.||+|...      .+..||||+++.. ..+....|.+|+.++.+++|||||++.|++...++.
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            467788899999999999999852      3578999999754 345566799999999999999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHhc
Q 011025          463 LLIYEYMPNKSLDVHLFG  480 (495)
Q Consensus       463 ~lv~Ey~~~GsL~~~L~~  480 (495)
                      ++|+||+++|+|.++++.
T Consensus        99 ~lv~e~~~~g~l~~~~~~  116 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRS  116 (308)
T ss_dssp             EEEEECCTTCBHHHHHHH
T ss_pred             eEEEeecCCCCHHHHHHh
Confidence            999999999999999974

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-13  Score=130.69  Aligned_cols=95  Identities=23%  Similarity=0.326  Sum_probs=78.9

Q ss_pred             cCCcccccccccCCceeEEeeeecC----CcEEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTLAD----GKAIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~~~----g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      .++|...++||+|+||.||+|....    +..||||.++.. .....+.|.+|+.++++++|||||+++|++. .+..++
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            4578889999999999999998532    356899999754 3444678999999999999999999999885 567899


Q ss_pred             EEecCCCCCHHHHHhcCCCCH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSL  485 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~  485 (495)
                      ||||+++|+|.+++.......
T Consensus        85 v~E~~~~g~l~~~~~~~~~~l  105 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRKYSL  105 (273)
T ss_dssp             EEECCTTEEHHHHHHHTTTTS
T ss_pred             EEEeccCCcHHhhhhccCCCC
Confidence            999999999999987655433

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=131.19  Aligned_cols=95  Identities=31%  Similarity=0.511  Sum_probs=76.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCc----EEEEEEcccC-ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGK----AIAVKRLSRT-SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLL  464 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~----~VaVK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  464 (495)
                      ++|...++||+|+||.||+|.. .+|+    .||||.++.. +.+..++|.+|+.++.+++|||||+++|++..+ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            3588899999999999999985 3444    5899998753 445678899999999999999999999999764 5678


Q ss_pred             EEecCCCCCHHHHHhcCCCCHH
Q 011025          465 IYEYMPNKSLDVHLFGLSLSLS  486 (495)
Q Consensus       465 v~Ey~~~GsL~~~L~~~~~~~~  486 (495)
                      ++||+.+|+|.+++.......+
T Consensus        88 v~e~~~~~~l~~~~~~~~~~~~  109 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKDNIG  109 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSSSCC
T ss_pred             EEEeccCCcccccccccccCCC
Confidence            8999999999999886654444

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=133.97  Aligned_cols=94  Identities=31%  Similarity=0.411  Sum_probs=81.4

Q ss_pred             hcCCcccccccccCCceeEEeeee------cCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTL------ADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~------~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...++||+|+||.||+|+.      ..+..||||+++... .....+|.+|+.++.++ +|||||+++|++..++
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            446788899999999999999974      245689999998643 44567899999999999 7999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++||||+++|+|.++|+...
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~  122 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKR  122 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTT
T ss_pred             EEEEEEEcCCCCCHHHHHHhcc
Confidence            9999999999999999998643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.6e-13  Score=134.14  Aligned_cols=94  Identities=28%  Similarity=0.425  Sum_probs=78.1

Q ss_pred             hcCCcccccccccCCceeEEeeeecC-C-----cEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEeCC
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLAD-G-----KAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLEGQ  460 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~~-g-----~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  460 (495)
                      ..++|...++||+|+||.||+|.... +     ..||||.+... .......|.+|+.++.++ +|||||+++|++...+
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            34678889999999999999998532 2     36999999754 334456899999999998 8999999999999999


Q ss_pred             EEEEEEecCCCCCHHHHHhcCC
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ..++||||+++|+|.++|+...
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~  136 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKR  136 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT
T ss_pred             eEEEEEEcCCCCcHHHHHHhcc
Confidence            9999999999999999998654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-13  Score=131.34  Aligned_cols=91  Identities=33%  Similarity=0.498  Sum_probs=69.0

Q ss_pred             CCcccccccccCCceeEEeeeec--CC--cEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLA--DG--KAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~--~g--~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...+.||+|+||.||+|.+.  ++  ..||||.+++.   ..+..++|.+|+.++.+++|||||+++|++.. +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            45788899999999999999853  23  37899999753   23446789999999999999999999999965 4678


Q ss_pred             EEEecCCCCCHHHHHhcCC
Q 011025          464 LIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~  482 (495)
                      +|+||+++|+|.+++....
T Consensus        87 lv~e~~~~~~l~~~~~~~~  105 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQ  105 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHG
T ss_pred             eeeeeecCcchhhhhhccc
Confidence            9999999999999887544

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.8e-13  Score=128.54  Aligned_cols=87  Identities=26%  Similarity=0.533  Sum_probs=73.0

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||.||+|. ..+|+.||||+++...  ....+.+.+|+.++++++|||||++.+++..++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            578899999999999999998 4679999999997442  2335789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHH
Q 011025          468 YMPNKSLDVHL  478 (495)
Q Consensus       468 y~~~GsL~~~L  478 (495)
                      |+.++ +.+++
T Consensus        82 ~~~~~-~~~~~   91 (298)
T d1gz8a_          82 FLHQD-LKKFM   91 (298)
T ss_dssp             CCSEE-HHHHH
T ss_pred             ecCCc-hhhhh
Confidence            99755 44444

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.36  E-value=5.4e-13  Score=127.85  Aligned_cols=104  Identities=22%  Similarity=0.383  Sum_probs=84.6

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCC--hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTS--GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|..++|+.||||.++...  ....+.|.+|+.++.+++||||+++++.+..++..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5788899999999999999998889999999997543  23357899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC-CCHH-HHHHHHHh
Q 011025          469 MPNKSLDVHLFGLS-LSLS-IKCYLLYI  494 (495)
Q Consensus       469 ~~~GsL~~~L~~~~-~~~~-~~~~l~~~  494 (495)
                      +.++.+..+..... .... ....+.++
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi  109 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQL  109 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHH
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHH
Confidence            98887777766433 2332 44444443

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=5e-13  Score=132.67  Aligned_cols=104  Identities=27%  Similarity=0.347  Sum_probs=81.1

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCC---hhhHHHHHH---HHHHHHcCCCCCccceEEEEEeCCEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTS---GQGLQEFKN---EVNLIAKLQHKNLVRLLGCCLEGQELL  463 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~---~~~~~~f~~---E~~~l~~l~H~niv~l~g~~~~~~~~~  463 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++.+..   .+....+.+   |+.++..++|||||++++++...+..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5788899999999999999984 569999999996421   122333444   467778889999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhcCCC--CHHHHHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLFGLSL--SLSIKCYLLYI  494 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~--~~~~~~~l~~~  494 (495)
                      +||||+++|+|.++|.....  ...+..++.++
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi  116 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEI  116 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHH
Confidence            99999999999999975432  23355555554

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=7.1e-13  Score=130.83  Aligned_cols=104  Identities=23%  Similarity=0.342  Sum_probs=86.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC---ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT---SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  466 (495)
                      ++|...++||+|+||.||++.. .+|+.||||++.+.   .....+.+.+|+.++..++|||||++++++......++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4788899999999999999985 57999999999643   2234677999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhcC-CCC-HHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGL-SLS-LSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~-~~~-~~~~~~l~~~  494 (495)
                      ||+.+|+|.+++... ... .....++.|+
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi  150 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQI  150 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHH
Confidence            999999999998653 222 3355555554

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.6e-13  Score=128.72  Aligned_cols=94  Identities=27%  Similarity=0.458  Sum_probs=74.9

Q ss_pred             hcCCcccccccccCCceeEEeeeec--------CCcEEEEEEcccCC-hhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          389 ATNHFSDENKLGQGGFGPVYKGTLA--------DGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       389 ~t~~~~~~~~LG~G~fG~Vykg~~~--------~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      ..++|...++||+|+||.||+|...        ++..||||.++... .....++.+|...+.++ +|||||+++|++..
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            3457888899999999999999842        12479999997653 45567899999999888 89999999999999


Q ss_pred             CCEEEEEEecCCCCCHHHHHhcCC
Q 011025          459 GQELLLIYEYMPNKSLDVHLFGLS  482 (495)
Q Consensus       459 ~~~~~lv~Ey~~~GsL~~~L~~~~  482 (495)
                      ++..++||||+++|+|.++|+...
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~  114 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARR  114 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTS
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhc
Confidence            999999999999999999997654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.6e-13  Score=128.15  Aligned_cols=99  Identities=22%  Similarity=0.338  Sum_probs=75.8

Q ss_pred             ccccccCCceeEEeeee-cCCcEEEEEEcccCChh-----hHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEecC
Q 011025          396 ENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQ-----GLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       396 ~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~-----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      .++||+|+||+||+|.. .+|+.||||+++.....     ..+.+.+|+.++.+++|||||++++++..++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            46899999999999994 56899999999754221     1246899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          470 PNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       470 ~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      +++++..++....  .......++.|+
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~qi  109 (299)
T d1ua2a_          83 ETDLEVIIKDNSLVLTPSHIKAYMLMT  109 (299)
T ss_dssp             SEEHHHHHTTCCSSCCSSHHHHHHHHH
T ss_pred             cchHHhhhhhcccCCCHHHHHHHHHHH
Confidence            9887776665332  223355555554

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=123.46  Aligned_cols=92  Identities=23%  Similarity=0.365  Sum_probs=80.9

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCCEEEEEEe
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQELLLIYE  467 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~E  467 (495)
                      ++|...++||+|+||+||+|+ ..+++.||||+++..  .......+.+|+.+++.++||||+++.+++......++++|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            468889999999999999999 467899999999643  23446789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhcCC
Q 011025          468 YMPNKSLDVHLFGLS  482 (495)
Q Consensus       468 y~~~GsL~~~L~~~~  482 (495)
                      ++.+++|..++....
T Consensus        82 ~~~~~~l~~~~~~~~   96 (292)
T d1unla_          82 FCDQDLKKYFDSCNG   96 (292)
T ss_dssp             CCSEEHHHHHHHTTT
T ss_pred             ecccccccccccccc
Confidence            999999998887543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-12  Score=126.50  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=76.6

Q ss_pred             CCcccc-cccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe----CCEEE
Q 011025          391 NHFSDE-NKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE----GQELL  463 (495)
Q Consensus       391 ~~~~~~-~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~----~~~~~  463 (495)
                      ++|... ++||+|+||.||++. ..+++.||||.++..     ..+.+|+.++.++ +|||||++++++..    ....+
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            467665 469999999999998 467899999999642     4577899887654 89999999998764    35679


Q ss_pred             EEEecCCCCCHHHHHhcCC---CCH-HHHHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLFGLS---LSL-SIKCYLLYI  494 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~---~~~-~~~~~l~~~  494 (495)
                      +||||+++|+|.++|....   ... ....++.++
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi  120 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI  120 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            9999999999999997642   222 245555544

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3e-12  Score=126.08  Aligned_cols=105  Identities=20%  Similarity=0.307  Sum_probs=83.8

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC-----CE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG-----QE  461 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  461 (495)
                      .++|...++||+|+||.||+|. ..+|+.||||+++..  +....+.+.+|+.++.+++|||+|++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            4578889999999999999998 467999999999754  334556789999999999999999999988642     33


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      .++++||+.+|+|.+++........ ++..+.++
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qi  130 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQI  130 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHH
Confidence            4667778889999999987665554 44445554

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.3e-12  Score=124.72  Aligned_cols=103  Identities=21%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEe------CCE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLE------GQE  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~  461 (495)
                      ++|...++||+|+||+||+|.. .+|+.||||+++..  +......+.+|+.++++++|||||++++++..      ...
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5688899999999999999984 56999999999753  34456679999999999999999999999864      357


Q ss_pred             EEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      .++||||+.++ |.+.+...-.....+.++.++
T Consensus        97 ~~iv~Ey~~~~-l~~~~~~~~~~~~i~~~~~qi  128 (355)
T d2b1pa1          97 VYLVMELMDAN-LCQVIQMELDHERMSYLLYQM  128 (355)
T ss_dssp             EEEEEECCSEE-HHHHHTSCCCHHHHHHHHHHH
T ss_pred             eEEEEeccchH-HHHhhhcCCCHHHHHHHHHHH
Confidence            89999999654 555666555555566666665

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.5e-12  Score=124.75  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccCC-hhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC----EEE
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTS-GQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ----ELL  463 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~  463 (495)
                      +++|...++||+|+||+||+|. ..+|+.||||++++.. ....+.+.+|+.+|.+++||||+++++++....    ..+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            3468889999999999999998 4579999999997543 344678999999999999999999999986542    234


Q ss_pred             EEEecCCCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          464 LIYEYMPNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       464 lv~Ey~~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      +++||+.+|+|.+++........ .+..+.|+
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qi  118 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQI  118 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHH
Confidence            45566779999999987665554 44455544

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.24  E-value=5.5e-12  Score=123.15  Aligned_cols=100  Identities=19%  Similarity=0.363  Sum_probs=81.0

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeC--CEEEEEE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEG--QELLLIY  466 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv~  466 (495)
                      ++|...++||+|+||.||+|.. .+|+.||||+++..   ..+.+.+|+.+|.+++ ||||+++++++...  ...++||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5788999999999999999984 57899999999753   3467899999999995 99999999998753  4589999


Q ss_pred             ecCCCCCHHHHHhcCCCCHHHHHHHHHh
Q 011025          467 EYMPNKSLDVHLFGLSLSLSIKCYLLYI  494 (495)
Q Consensus       467 Ey~~~GsL~~~L~~~~~~~~~~~~l~~~  494 (495)
                      ||+++|+|..+.+. -.....+..+.|+
T Consensus       112 e~~~~~~L~~~~~~-l~e~~i~~i~~qi  138 (328)
T d3bqca1         112 EHVNNTDFKQLYQT-LTDYDIRFYMYEI  138 (328)
T ss_dssp             ECCCSCBGGGTTTS-CCHHHHHHHHHHH
T ss_pred             eecCCCcHHHHhcC-CCHHHHHHHHHHH
Confidence            99999999887543 2344455555554

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5e-12  Score=124.42  Aligned_cols=104  Identities=21%  Similarity=0.370  Sum_probs=77.5

Q ss_pred             cCCcccccccccCCceeEEeee-ecCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeCC------
Q 011025          390 TNHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEGQ------  460 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  460 (495)
                      .++|...++||+|+||.||+|. ..+|+.||||+++..  +....+.+.+|+.+|++++|||||++++++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            4578889999999999999998 457999999999753  3344678999999999999999999999987644      


Q ss_pred             EEEEEEecCCCCCHHHHHhcCCCCHH-HHHHHHHh
Q 011025          461 ELLLIYEYMPNKSLDVHLFGLSLSLS-IKCYLLYI  494 (495)
Q Consensus       461 ~~~lv~Ey~~~GsL~~~L~~~~~~~~-~~~~l~~~  494 (495)
                      ..++||||+ +++|..+++....... .+..+.|+
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi  130 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQM  130 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             eEEEEEecc-cccHHHHHHhccccHHHHHHHHHHH
Confidence            469999999 6788888876665554 44444443

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5e-12  Score=121.79  Aligned_cols=95  Identities=24%  Similarity=0.394  Sum_probs=76.0

Q ss_pred             HHhcCCcccccccccCCceeEEeeeec------CCcEEEEEEcccC-ChhhHHHHHHHHHHHHcC-CCCCccceEEEEEe
Q 011025          387 LEATNHFSDENKLGQGGFGPVYKGTLA------DGKAIAVKRLSRT-SGQGLQEFKNEVNLIAKL-QHKNLVRLLGCCLE  458 (495)
Q Consensus       387 ~~~t~~~~~~~~LG~G~fG~Vykg~~~------~g~~VaVK~l~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  458 (495)
                      +...++|...++||+|+||.||+|...      +++.||||.++.. .....+++.+|...+.++ +|+||+.+.+++..
T Consensus         9 ei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~   88 (299)
T d1ywna1           9 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK   88 (299)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeecc
Confidence            344577899999999999999999842      3468999999754 344567788898888877 78999999999876


Q ss_pred             C-CEEEEEEecCCCCCHHHHHhcC
Q 011025          459 G-QELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       459 ~-~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                      . ...++||||+++|+|.++|+..
T Consensus        89 ~~~~~~iv~E~~~~g~L~~~l~~~  112 (299)
T d1ywna1          89 PGGPLMVIVEFCKFGNLSTYLRSK  112 (299)
T ss_dssp             TTSCCEEEEECCTTCBHHHHHHHT
T ss_pred             CCCeEEEEEEecCCCcHHHHHHhc
Confidence            4 4689999999999999999754

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.2e-12  Score=124.62  Aligned_cols=104  Identities=23%  Similarity=0.326  Sum_probs=84.0

Q ss_pred             CCcccccccccCCceeEEeeee----cCCcEEEEEEcccCC----hhhHHHHHHHHHHHHcCCC-CCccceEEEEEeCCE
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL----ADGKAIAVKRLSRTS----GQGLQEFKNEVNLIAKLQH-KNLVRLLGCCLEGQE  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~----~~g~~VaVK~l~~~~----~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~  461 (495)
                      ++|...++||+|+||+||++..    .+|+.||||.+++..    ....+.+.+|+.++.+++| |||+++.++......
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688999999999999999973    247899999997431    2335678999999999966 899999999999999


Q ss_pred             EEEEEecCCCCCHHHHHhcCC--CCHHHHHHHHHh
Q 011025          462 LLLIYEYMPNKSLDVHLFGLS--LSLSIKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~GsL~~~L~~~~--~~~~~~~~l~~~  494 (495)
                      .++++||+.+|+|.+++....  .......++.|+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi  138 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEI  138 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHH
Confidence            999999999999999997543  233355555554

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.6e-12  Score=120.50  Aligned_cols=104  Identities=23%  Similarity=0.374  Sum_probs=81.0

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCCh------hhHHHHHHHHHHHHcCC--CCCccceEEEEEeCCE
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSG------QGLQEFKNEVNLIAKLQ--HKNLVRLLGCCLEGQE  461 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~------~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~  461 (495)
                      ++|...++||+|+||.||+|. ..+|+.||||.+++...      .....+.+|+.++.+++  |||||++++++..++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            468889999999999999999 45789999999974311      12234778999999986  9999999999999999


Q ss_pred             EEEEEecCCC-CCHHHHHhcC-CCCHH-HHHHHHHh
Q 011025          462 LLLIYEYMPN-KSLDVHLFGL-SLSLS-IKCYLLYI  494 (495)
Q Consensus       462 ~~lv~Ey~~~-GsL~~~L~~~-~~~~~-~~~~l~~~  494 (495)
                      .++|+||+.+ +++.+++... ..... ...++.|+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi  119 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQV  119 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHH
Confidence            9999999975 6888887643 23333 44555554

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.9e-11  Score=118.73  Aligned_cols=89  Identities=21%  Similarity=0.416  Sum_probs=71.9

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccC--ChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC--------
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRT--SGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG--------  459 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  459 (495)
                      ++|+..++||+|+||+||+|.. .+|+.||||++...  .......+.+|+.++++++||||+++.+++...        
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~   89 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   89 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC---------
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccC
Confidence            6788899999999999999994 57999999998643  233456789999999999999999999998652        


Q ss_pred             CEEEEEEecCCCCCHHHHHh
Q 011025          460 QELLLIYEYMPNKSLDVHLF  479 (495)
Q Consensus       460 ~~~~lv~Ey~~~GsL~~~L~  479 (495)
                      ...++|+||++++.+..+..
T Consensus        90 ~~~~iv~e~~~~~~~~~~~~  109 (318)
T d3blha1          90 GSIYLVFDFCEHDLAGLLSN  109 (318)
T ss_dssp             -CEEEEEECCCEEHHHHHTC
T ss_pred             ceEEEEEeccCCCccchhhh
Confidence            35799999998887765554

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.1e-11  Score=117.98  Aligned_cols=82  Identities=29%  Similarity=0.534  Sum_probs=66.3

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceEEEEEeC------CEEEE
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLLGCCLEG------QELLL  464 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~~l  464 (495)
                      .|...++||+|+||+||++.. .+|+.||||++.....    .+.+|+.++.+++||||+++++++...      ...+|
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            577788999999999999995 5699999999975432    234799999999999999999998653      23789


Q ss_pred             EEecCCCCCHHHH
Q 011025          465 IYEYMPNKSLDVH  477 (495)
Q Consensus       465 v~Ey~~~GsL~~~  477 (495)
                      ||||+++|.+..+
T Consensus        97 v~Ey~~~~~~~~l  109 (350)
T d1q5ka_          97 VLDYVPETVYRVA  109 (350)
T ss_dssp             EEECCSEEHHHHH
T ss_pred             EEeccCCccHHHH
Confidence            9999987644443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=3e-10  Score=108.75  Aligned_cols=89  Identities=22%  Similarity=0.365  Sum_probs=75.0

Q ss_pred             CCcccccccccCCceeEEeee-ecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCC-CCccceEEEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGT-LADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQH-KNLVRLLGCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~-~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|+ ..+|+.||||.++....  ...+.+|++.+..++| +|++.+.++...+...++||||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            468889999999999999999 45689999999865432  2356788889999965 8999999999999999999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      + +|+|.+++....
T Consensus        83 ~-~~~l~~~~~~~~   95 (293)
T d1csna_          83 L-GPSLEDLLDLCG   95 (293)
T ss_dssp             C-CCBHHHHHHHTT
T ss_pred             c-CCCHHHHHHhhc
Confidence            8 799999987644

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.9e-11  Score=113.05  Aligned_cols=92  Identities=23%  Similarity=0.372  Sum_probs=69.2

Q ss_pred             cCCcccccccccCCceeEEeeee-cC-CcEEEEEEcccCC--hhhHHHHHHHHHHHHcC---CCCCccceEEEEEe----
Q 011025          390 TNHFSDENKLGQGGFGPVYKGTL-AD-GKAIAVKRLSRTS--GQGLQEFKNEVNLIAKL---QHKNLVRLLGCCLE----  458 (495)
Q Consensus       390 t~~~~~~~~LG~G~fG~Vykg~~-~~-g~~VaVK~l~~~~--~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~----  458 (495)
                      .++|...++||+|+||.||++.. .+ ++.||||+++...  ......+.+|+.++..+   +||||+++++++..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            36788899999999999999984 33 6789999996432  22233566777766655   89999999999864    


Q ss_pred             -CCEEEEEEecCCCCCHHHHHhcC
Q 011025          459 -GQELLLIYEYMPNKSLDVHLFGL  481 (495)
Q Consensus       459 -~~~~~lv~Ey~~~GsL~~~L~~~  481 (495)
                       ....++++||+++|++.......
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~  109 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVP  109 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSC
T ss_pred             cCceEEEEEEeccCCchhhhhhcc
Confidence             24579999999888776655443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=7.7e-10  Score=106.05  Aligned_cols=89  Identities=25%  Similarity=0.345  Sum_probs=69.4

Q ss_pred             CCcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCCCCCccceE-EEEEeCCEEEEEEec
Q 011025          391 NHFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQHKNLVRLL-GCCLEGQELLLIYEY  468 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~-g~~~~~~~~~lv~Ey  468 (495)
                      ++|...++||+|+||.||+|.. .+|+.||||.+.....  .+++..|+.++..++|+|++..+ ++...++..++||||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            4688899999999999999984 5689999999875432  23578999999999877766555 445667888999999


Q ss_pred             CCCCCHHHHHhcCC
Q 011025          469 MPNKSLDVHLFGLS  482 (495)
Q Consensus       469 ~~~GsL~~~L~~~~  482 (495)
                      + +|+|.+++....
T Consensus        85 ~-~~~l~~~~~~~~   97 (299)
T d1ckia_          85 L-GPSLEDLFNFCS   97 (299)
T ss_dssp             C-CCBHHHHHHHTT
T ss_pred             c-CCchhhhhhhcc
Confidence            8 566777665433

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=3.9e-07  Score=88.94  Aligned_cols=81  Identities=15%  Similarity=0.250  Sum_probs=61.9

Q ss_pred             CcccccccccCCceeEEeeee-cCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-----------CCCccceEEEEEe-
Q 011025          392 HFSDENKLGQGGFGPVYKGTL-ADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-----------HKNLVRLLGCCLE-  458 (495)
Q Consensus       392 ~~~~~~~LG~G~fG~Vykg~~-~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~~-  458 (495)
                      +|...++||+|+||.||+|+. .+|+.||||+++... ...+.+.+|+.++..++           |+||+++++++.. 
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            488899999999999999984 579999999997542 23467788998888775           5789999988754 


Q ss_pred             -CCEEEEEEecCCCCC
Q 011025          459 -GQELLLIYEYMPNKS  473 (495)
Q Consensus       459 -~~~~~lv~Ey~~~Gs  473 (495)
                       ....++++++...+.
T Consensus        93 ~~~~~~~~~~~~~~~~  108 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGE  108 (362)
T ss_dssp             ETTEEEEEEEECCCCE
T ss_pred             cccceeeeeeeccccc
Confidence             355666666655443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.28  E-value=4.5e-07  Score=80.26  Aligned_cols=79  Identities=18%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             ccccccccCCceeEEeeeecCCcEEEEEEcccCCh------------------hhHHHHHHHHHHHHcCCCCCccceEEE
Q 011025          394 SDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSG------------------QGLQEFKNEVNLIAKLQHKNLVRLLGC  455 (495)
Q Consensus       394 ~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~------------------~~~~~f~~E~~~l~~l~H~niv~l~g~  455 (495)
                      ..+++||+|+||.||+|...+|+.||||.++....                  ........|...+.++.|.+++..++.
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            34689999999999999987899999998753210                  012345678889999999999987754


Q ss_pred             EEeCCEEEEEEecCCCCCHHH
Q 011025          456 CLEGQELLLIYEYMPNKSLDV  476 (495)
Q Consensus       456 ~~~~~~~~lv~Ey~~~GsL~~  476 (495)
                      .  .  .+++|||++++.+.+
T Consensus        83 ~--~--~~lvme~~~~~~~~~   99 (191)
T d1zara2          83 E--G--NAVLMELIDAKELYR   99 (191)
T ss_dssp             E--T--TEEEEECCCCEEGGG
T ss_pred             c--C--CEEEEEeeccccccc
Confidence            2  2  279999999877655

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.76  E-value=0.21  Score=44.24  Aligned_cols=91  Identities=9%  Similarity=-0.032  Sum_probs=59.6

Q ss_pred             CCcccccccccCCceeEEeeeecCCcEEEEEEcccCChhhHHHHHHHHHHHHcCC-CCCccceEEEEEeCCEEEEEEecC
Q 011025          391 NHFSDENKLGQGGFGPVYKGTLADGKAIAVKRLSRTSGQGLQEFKNEVNLIAKLQ-HKNLVRLLGCCLEGQELLLIYEYM  469 (495)
Q Consensus       391 ~~~~~~~~LG~G~fG~Vykg~~~~g~~VaVK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~  469 (495)
                      ..+...+..+-+.-..||+... +++.+.||+...........+.+|...+..+. +--+-+++.....++..++|||++
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l   92 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA   92 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred             hceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEec
Confidence            3444333333333467998765 55667788876544334445677887776663 333567777777788899999999


Q ss_pred             CCCCHHHHHhcCC
Q 011025          470 PNKSLDVHLFGLS  482 (495)
Q Consensus       470 ~~GsL~~~L~~~~  482 (495)
                      ++..+.+......
T Consensus        93 ~G~~~~~~~~~~~  105 (263)
T d1j7la_          93 DGVLCSEEYEDEQ  105 (263)
T ss_dssp             SSEEHHHHTTTCS
T ss_pred             ccccccccccccc
Confidence            9999877655443