Your job contains 1 sequence.
>011027
MTSISSNNQSTNFTLQESVNVWGSRGRRQSCRTSAAFAFKSSFFGKKPLSLSVNKTRPGR
ALGPTGYSRLNPITASSRCHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGA
TGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGR
TPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAV
AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS
GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN
HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD
FISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNP
LKVDSAPFAVQGRCC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011027
(495 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2166076 - symbol:AT5G48440 species:3702 "Arabi... 1397 6.8e-143 1
TIGR_CMR|BA_2835 - symbol:BA_2835 "glycine oxidase, putat... 262 1.5e-20 1
UNIPROTKB|Q4KDJ7 - symbol:hcnC "Hydrogen cyanide synthase... 124 1.7e-13 3
UNIPROTKB|Q9KTV1 - symbol:dadA "D-amino acid dehydrogenas... 121 3.1e-10 2
TIGR_CMR|VC_0786 - symbol:VC_0786 "D-amino acid dehydroge... 121 3.1e-10 2
UNIPROTKB|P0A6J5 - symbol:dadA "D-amino acid dehydrogenas... 123 5.6e-09 2
TIGR_CMR|BA_0730 - symbol:BA_0730 "glycine oxidase" speci... 116 4.1e-08 2
UNIPROTKB|F1PKA8 - symbol:DMGDH "Uncharacterized protein"... 114 7.7e-08 2
UNIPROTKB|F1PK75 - symbol:DMGDH "Uncharacterized protein"... 112 1.1e-07 2
ASPGD|ASPL0000068452 - symbol:AN7324 species:162425 "Emer... 127 1.7e-07 2
UNIPROTKB|F1RF50 - symbol:DMGDH "Uncharacterized protein"... 115 2.1e-07 2
UNIPROTKB|Q9UI17 - symbol:DMGDH "Dimethylglycine dehydrog... 109 3.7e-07 2
TIGR_CMR|SPO_A0311 - symbol:SPO_A0311 "FAD dependent oxid... 125 6.4e-07 2
TIGR_CMR|BA_2715 - symbol:BA_2715 "oxidoreductase, DadA f... 116 7.1e-07 2
MGI|MGI:1921379 - symbol:Dmgdh "dimethylglycine dehydroge... 104 8.0e-07 2
TIGR_CMR|SPO_A0168 - symbol:SPO_A0168 "oxidoreductase, FA... 141 1.6e-06 1
TIGR_CMR|CPS_2746 - symbol:CPS_2746 "oxidoreductase, FAD-... 92 4.0e-06 2
UNIPROTKB|F1MDJ6 - symbol:DMGDH "Uncharacterized protein"... 104 4.1e-06 2
RGD|620453 - symbol:Dmgdh "dimethylglycine dehydrogenase"... 103 5.1e-06 2
UNIPROTKB|Q63342 - symbol:Dmgdh "Dimethylglycine dehydrog... 103 5.1e-06 2
TIGR_CMR|CPS_1447 - symbol:CPS_1447 "putative D-amino aci... 116 1.2e-05 2
TIGR_CMR|SPO_A0262 - symbol:SPO_A0262 "oxidoreductase, FA... 129 2.1e-05 2
UNIPROTKB|Q5LTV9 - symbol:SPO1303 "Fructosyl-amino acid o... 113 7.0e-05 3
TIGR_CMR|SPO_1303 - symbol:SPO_1303 "fructosyl-amino acid... 113 7.0e-05 3
UNIPROTKB|Q97PK1 - symbol:SP_1608 "Oxidoreductase, DadA f... 112 0.00027 2
TIGR_CMR|SPO_3666 - symbol:SPO_3666 "oxidoreductase, FAD-... 102 0.00030 2
UNIPROTKB|F1S0R9 - symbol:SARDH "Uncharacterized protein"... 102 0.00033 2
UNIPROTKB|Q5LWB4 - symbol:SPO0428 "Amino acid deaminase, ... 102 0.00056 2
TIGR_CMR|SPO_0428 - symbol:SPO_0428 "amino acid deaminase... 102 0.00056 2
UNIPROTKB|Q5LW01 - symbol:SPO0543 "Uncharacterized protei... 118 0.00057 2
TIGR_CMR|SPO_0543 - symbol:SPO_0543 "conserved hypothetic... 118 0.00057 2
>TAIR|locus:2166076 [details] [associations]
symbol:AT5G48440 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016491 "oxidoreductase
activity" evidence=IEA;ISS] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR006076 Pfam:PF01266
EMBL:CP002688 GO:GO:0016491 EMBL:AB020745 EMBL:BT012567
EMBL:AK175791 IPI:IPI00516791 RefSeq:NP_199655.3 UniGene:At.29848
ProteinModelPortal:Q9LV69 SMR:Q9LV69 PRIDE:Q9LV69
EnsemblPlants:AT5G48440.1 GeneID:834899 KEGG:ath:AT5G48440
TAIR:At5g48440 HOGENOM:HOG000243236 InParanoid:Q9LV69 OMA:ISMTATM
PhylomeDB:Q9LV69 ProtClustDB:CLSN2681666 Genevestigator:Q9LV69
Uniprot:Q9LV69
Length = 459
Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
Identities = 275/425 (64%), Positives = 332/425 (78%)
Query: 73 ITASSRCHTFDVXXXXXXXXXLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVH 132
+TAS +FDV LTIARQ L GSDLSVAVVDK VPCSGATGAGQGYIWM H
Sbjct: 38 VTASRS--SFDVVVVGGGIIGLTIARQFLTGSDLSVAVVDKAVPCSGATGAGQGYIWMTH 95
Query: 133 RTPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERV 192
+ PGS++WDL LRS++LW LA+SL D GLDP +++GWK+TGSLLIGRT EE V LK++V
Sbjct: 96 KKPGSDVWDLTLRSHELWHKLAESLTDDGLDPEELLGWKKTGSLLIGRTTEECVALKQKV 155
Query: 193 KQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFAS 252
+L EAGLR EYLSS++LL EP ++V +++ AAFLP DSQLDA AVAYIEKGNR FA+
Sbjct: 156 HELSEAGLRTEYLSSAELLLKEPAILVNDNTGAAFLPDDSQLDAHRAVAYIEKGNRAFAT 215
Query: 253 KGRYAEFYHDPVTCLLRSNSTGEVEA-VQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRET 311
GRYAEFY++PVT L+RS+ +V A V+T K LY KKA +VAAGCWSGSLMH+LL++
Sbjct: 216 AGRYAEFYNEPVTGLIRSDGDSKVVAGVKTLKRNLYGKKATIVAAGCWSGSLMHELLKDC 275
Query: 312 EIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTA 371
I LD+PVKPRKGHLLV+ENF+S LNH MEAGY H ++ V+ ++LSISMTA
Sbjct: 276 NIPLDVPVKPRKGHLLVVENFDSFHLNHGIMEAGYSNHQSASVSGLDVDE-RMLSISMTA 334
Query: 372 TTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGL 431
T D GNLVLGSSR+F GF+TE ++ II IW+RAAEF+PKLRD+ L DFI NRKVR+GL
Sbjct: 335 TMDTSGNLVLGSSREFVGFDTEADEFIIRCIWERAAEFFPKLRDISLEDFIRNRKVRVGL 394
Query: 432 RPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAVQ 491
RPYMPDGKPVIG VPGL ++LA GHEG GLS+AL TAE+V DMVL P +VD++ F V+
Sbjct: 395 RPYMPDGKPVIGSVPGLQNMYLAAGHEGGGLSMALATAEMVTDMVLGKPSQVDTSTFGVK 454
Query: 492 GR-CC 495
GR CC
Sbjct: 455 GRRCC 459
>TIGR_CMR|BA_2835 [details] [associations]
symbol:BA_2835 "glycine oxidase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0006546 "glycine catabolic
process" evidence=ISS] [GO:0016645 "oxidoreductase activity, acting
on the CH-NH group of donors" evidence=ISS] InterPro:IPR000447
InterPro:IPR006076 Pfam:PF01266 PRINTS:PR01001 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0009331
GO:GO:0006072 GO:GO:0004368 KO:K00301 RefSeq:NP_845181.1
RefSeq:YP_019477.1 RefSeq:YP_028903.1 ProteinModelPortal:Q81PH0
DNASU:1085575 EnsemblBacteria:EBBACT00000012495
EnsemblBacteria:EBBACT00000016083 EnsemblBacteria:EBBACT00000023775
GeneID:1085575 GeneID:2819228 GeneID:2850712 KEGG:ban:BA_2835
KEGG:bar:GBAA_2835 KEGG:bat:BAS2644 HOGENOM:HOG000092023
OMA:RQDIREE ProtClustDB:CLSK916824
BioCyc:BANT260799:GJAJ-2708-MONOMER
BioCyc:BANT261594:GJ7F-2802-MONOMER Uniprot:Q81PH0
Length = 391
Score = 262 (97.3 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 82/310 (26%), Positives = 147/310 (47%)
Query: 170 WKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLP 229
++ GS+L+ + EE+ ++ V + EAGL L D+ +AE +
Sbjct: 83 YRAPGSILVCESDEEMEAAQQWVNRQKEAGLPFRMLDRQDI-RAESPFFADDLLGGLECA 141
Query: 230 YDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSK 289
DS ++ L + ++ + +K F H V + R + V+T+ T ++
Sbjct: 142 TDSTVNPYLLAFSLLAESKKYGTKA----FNHTEVKEMKRDKDGSFI--VETTNKT-FTA 194
Query: 290 KAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGH 349
K +V AAG W+ + L ++IP++PRKGH++V + ME GY+
Sbjct: 195 KQVVNAAGVWAPKIGQML------DVNIPIEPRKGHIIVASRQQHVGCRKV-MEFGYL-- 245
Query: 350 HDLTLHPGQVNHGQILS---ISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406
++ G+ + +++ N ++GSSR+F GF+T++ +I I RA
Sbjct: 246 --ISKFGGKRKVDALTEKYGVALVFEPTESQNFLIGSSREFVGFHTKINNEVIKCIANRA 303
Query: 407 AEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLAL 466
FYPK+ D+ + + GLRP+ D P+I V + F+A GHEG G+SLA
Sbjct: 304 IRFYPKMADMMVI------RSYAGLRPWTEDHLPIISRVEHIPNYFIAAGHEGDGISLAA 357
Query: 467 GTAELVADMV 476
T +++ +++
Sbjct: 358 VTGKVIEELL 367
>UNIPROTKB|Q4KDJ7 [details] [associations]
symbol:hcnC "Hydrogen cyanide synthase HcnC" species:220664
"Pseudomonas protegens Pf-5" [GO:0006546 "glycine catabolic
process" evidence=ISS] [GO:0050622 "glycine dehydrogenase
(cyanide-forming) activity" evidence=ISS] InterPro:IPR006076
Pfam:PF01266 EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0006546
eggNOG:COG0665 RefSeq:YP_259686.1 ProteinModelPortal:Q4KDJ7
STRING:Q4KDJ7 GeneID:3476468 KEGG:pfl:PFL_2579 PATRIC:19874439
HOGENOM:HOG000296498 KO:K10816 OMA:LYAEHIV ProtClustDB:CLSK867076
BioCyc:PFLU220664:GIX8-2593-MONOMER GO:GO:0050622 Uniprot:Q4KDJ7
Length = 417
Score = 124 (48.7 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 69/258 (26%), Positives = 108/258 (41%)
Query: 132 HRTPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKER 191
H P S +D AL+SN+L+ L L GL + ++QTG + E+ + +
Sbjct: 90 HILPQS-FFDFALQSNELYPRLHREL--MGLHNMD-FKFEQTGLKFVIYDEEDRLYAEHI 145
Query: 192 VKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAM-LAVAYIEKGNRHF 250
V + + +L + L +EP + FL D Q++ L AY E G R
Sbjct: 146 VGCIPHLSDQVRWLDQAALRASEPNVSHEAQGALEFL-CDHQVNPFRLTDAYTE-GARQ- 202
Query: 251 ASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRE 310
G +++ VT +L + V V+T L+ ++ AAG W+ L L+
Sbjct: 203 --NG-VDVYFNTNVTGVLHQGN--RVSGVKTDVAGLFRCTTLINAAGAWAAELS---LQA 254
Query: 311 TEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILS---I 367
T I +IPVKP KG +L+ E L + Y+ D G++ G
Sbjct: 255 TGI--EIPVKPVKGQILLTERMPKLLNGCLTTSDCYMAQKD----NGEILIGSTTEDKGF 308
Query: 368 SMTATTDVIGNLVLGSSR 385
+T T I LV G+ R
Sbjct: 309 DVTTTYPEINGLVQGAVR 326
Score = 111 (44.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 377 GNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMP 436
G +++GS+ + GF+ I+ + + A P+L + L ++ GLRP P
Sbjct: 295 GEILIGSTTEDKGFDVTTTYPEINGLVQGAVRCVPELAHVNL------KRCWAGLRPGSP 348
Query: 437 DGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
D P++GP+ G+ A GH G+ + T L+ +V L +D PF
Sbjct: 349 DELPILGPMDGVEGYLNACGHFRTGILTSAITGVLLDKLVNDEALPLDITPF 400
Score = 56 (24.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 82 FDVXXXXXXXXXLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPG 136
+DV + A QL DL VA++D P A+ A G +W + + G
Sbjct: 5 YDVVIAGGGVIGASCAYQLSKRKDLKVALIDAKRP-GNASRASAGGLWAIGESVG 58
>UNIPROTKB|Q9KTV1 [details] [associations]
symbol:dadA "D-amino acid dehydrogenase small subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006520 "cellular amino acid metabolic process" evidence=ISS]
[GO:0008718 "D-amino-acid dehydrogenase activity" evidence=ISS]
[GO:0009324 "D-amino-acid dehydrogenase complex" evidence=ISS]
HAMAP:MF_01202 InterPro:IPR006076 InterPro:IPR023080 Pfam:PF01266
GO:GO:0006520 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0019478
eggNOG:COG0665 KO:K00285 ProtClustDB:PRK00711 GO:GO:0008718
PIR:F82279 RefSeq:NP_230435.1 ProteinModelPortal:Q9KTV1
DNASU:2615329 GeneID:2615329 KEGG:vch:VC0786 PATRIC:20080679
OMA:RTAAQME GO:GO:0009324 Uniprot:Q9KTV1
Length = 421
Score = 121 (47.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 367 ISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRK 426
+++T +D I V G++ + AGF+ + + I A + +P D F +
Sbjct: 301 VALTRFSDRIR--VAGTA-ELAGFDPAIPEARKATIEMVARDLFPHGGDFAKGQFWT--- 354
Query: 427 VRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTN 479
G RP PDG P+IG P + ++ TGH LG ++A G+A ++AD VLT+
Sbjct: 355 ---GFRPMTPDGTPIIGATP-YTNLYTNTGHGTLGWTMACGSASILAD-VLTH 402
Score = 100 (40.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 45/163 (27%), Positives = 78/163 (47%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R ++L +++ ++ L ++G+R E L+ + L EP L ++ +L
Sbjct: 134 RQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHEPGLAPVQEKLVGGLWL 193
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSN-STGE-VEAVQTSKNTL 286
P D D L + + +K + F+ D C ++ G+ + VQT L
Sbjct: 194 PDDETGDCYLFCQQLTE-----LAKQQGVRFHFD---CHIQQLVCEGKKIIGVQTDLGLL 245
Query: 287 YSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVL 329
+ A VVA G +S SL+ L ++IPV P KG+ L L
Sbjct: 246 KAD-AYVVALGSYSTSLLKPL------GIEIPVYPVKGYSLTL 281
>TIGR_CMR|VC_0786 [details] [associations]
symbol:VC_0786 "D-amino acid dehydrogenase, small subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006520
"cellular amino acid metabolic process" evidence=ISS] [GO:0008718
"D-amino-acid dehydrogenase activity" evidence=ISS] [GO:0009324
"D-amino-acid dehydrogenase complex" evidence=ISS] HAMAP:MF_01202
InterPro:IPR006076 InterPro:IPR023080 Pfam:PF01266 GO:GO:0006520
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0019478
eggNOG:COG0665 KO:K00285 ProtClustDB:PRK00711 GO:GO:0008718
PIR:F82279 RefSeq:NP_230435.1 ProteinModelPortal:Q9KTV1
DNASU:2615329 GeneID:2615329 KEGG:vch:VC0786 PATRIC:20080679
OMA:RTAAQME GO:GO:0009324 Uniprot:Q9KTV1
Length = 421
Score = 121 (47.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 367 ISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRK 426
+++T +D I V G++ + AGF+ + + I A + +P D F +
Sbjct: 301 VALTRFSDRIR--VAGTA-ELAGFDPAIPEARKATIEMVARDLFPHGGDFAKGQFWT--- 354
Query: 427 VRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTN 479
G RP PDG P+IG P + ++ TGH LG ++A G+A ++AD VLT+
Sbjct: 355 ---GFRPMTPDGTPIIGATP-YTNLYTNTGHGTLGWTMACGSASILAD-VLTH 402
Score = 100 (40.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 45/163 (27%), Positives = 78/163 (47%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R ++L +++ ++ L ++G+R E L+ + L EP L ++ +L
Sbjct: 134 RQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHEPGLAPVQEKLVGGLWL 193
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSN-STGE-VEAVQTSKNTL 286
P D D L + + +K + F+ D C ++ G+ + VQT L
Sbjct: 194 PDDETGDCYLFCQQLTE-----LAKQQGVRFHFD---CHIQQLVCEGKKIIGVQTDLGLL 245
Query: 287 YSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVL 329
+ A VVA G +S SL+ L ++IPV P KG+ L L
Sbjct: 246 KAD-AYVVALGSYSTSLLKPL------GIEIPVYPVKGYSLTL 281
>UNIPROTKB|P0A6J5 [details] [associations]
symbol:dadA "D-amino acid dehydrogenase" species:83333
"Escherichia coli K-12" [GO:0019480 "L-alanine oxidation to
pyruvate via D-alanine" evidence=IMP] [GO:0055130 "D-alanine
catabolic process" evidence=IEA;IMP] [GO:0005886 "plasma membrane"
evidence=IEA;IDA] [GO:0008718 "D-amino-acid dehydrogenase activity"
evidence=IEA;IDA] HAMAP:MF_01202 InterPro:IPR006076
InterPro:IPR023080 Pfam:PF01266 UniPathway:UPA00043
InterPro:IPR016040 GO:GO:0005886 GO:GO:0000166 Gene3D:3.40.50.720
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:L02948 PIR:B53383 RefSeq:NP_415707.1
RefSeq:YP_489456.1 ProteinModelPortal:P0A6J5 SMR:P0A6J5
IntAct:P0A6J5 PRIDE:P0A6J5 EnsemblBacteria:EBESCT00000001636
EnsemblBacteria:EBESCT00000001637 EnsemblBacteria:EBESCT00000001638
EnsemblBacteria:EBESCT00000015005 GeneID:12931110 GeneID:945752
KEGG:ecj:Y75_p1161 KEGG:eco:b1189 PATRIC:32117624 EchoBASE:EB1379
EcoGene:EG11407 eggNOG:COG0665 HOGENOM:HOG000217450 KO:K00285
OMA:ETGIQYE ProtClustDB:PRK00711
BioCyc:EcoCyc:DALADEHYDROGA-MONOMER
BioCyc:ECOL316407:JW1178-MONOMER
BioCyc:MetaCyc:DALADEHYDROGA-MONOMER Genevestigator:P0A6J5
GO:GO:0008718 GO:GO:0055130 GO:GO:0019480 Uniprot:P0A6J5
Length = 432
Score = 123 (48.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 371 ATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIG 430
A T + +G + GFNTE+ Q + + + YP+ + A F + G
Sbjct: 300 AITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWT------G 353
Query: 431 LRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
LRP PDG PV+G ++L TGH LG ++A G+ +L++D++
Sbjct: 354 LRPMTPDGTPVVGRTR-FKNLWLNTGHGTLGWTMACGSGQLLSDLL 398
Score = 86 (35.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 41/161 (25%), Positives = 69/161 (42%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELM-VGEDSRAAF-L 228
+Q G+L + RT ++ + L +AG+ + L SS L + EP L V L
Sbjct: 133 RQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALAEVAHKLTGGLQL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + + K R+ + PV LL ++ V+ + +
Sbjct: 193 PNDETGDCQLFTQNLARMAEQAGVKFRF----NTPVDQLLCDGE--QIYGVKCGDEVIKA 246
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVL 329
A V+A G +S +++ ++DIPV P KG+ L +
Sbjct: 247 D-AYVMAFGSYSTAMLKG-------IVDIPVYPLKGYSLTI 279
>TIGR_CMR|BA_0730 [details] [associations]
symbol:BA_0730 "glycine oxidase" species:198094 "Bacillus
anthracis str. Ames" [GO:0006546 "glycine catabolic process"
evidence=ISS] [GO:0016647 "oxidoreductase activity, acting on the
CH-NH group of donors, oxygen as acceptor" evidence=ISS]
InterPro:IPR006076 InterPro:IPR012727 Pfam:PF01266 GO:GO:0050660
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR OMA:QERFYIT
HSSP:O31616 HOGENOM:HOG000042039 KO:K03153 TIGRFAMs:TIGR02352
RefSeq:NP_843255.1 RefSeq:YP_017363.1 RefSeq:YP_026972.1
ProteinModelPortal:Q81UX6 DNASU:1088163
EnsemblBacteria:EBBACT00000010359 EnsemblBacteria:EBBACT00000013897
EnsemblBacteria:EBBACT00000024302 GeneID:1088163 GeneID:2814318
GeneID:2848814 KEGG:ban:BA_0730 KEGG:bar:GBAA_0730 KEGG:bat:BAS0696
ProtClustDB:CLSK915942 BioCyc:BANT260799:GJAJ-776-MONOMER
BioCyc:BANT261594:GJ7F-804-MONOMER GO:GO:0043799 Uniprot:Q81UX6
Length = 369
Score = 116 (45.9 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 60/241 (24%), Positives = 106/241 (43%)
Query: 79 CHTFDVXXXXXXXXXLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSE 138
C +DV ++A L VA+V+K S A+ A G + + +
Sbjct: 2 CKKYDVAIIGGGVIGSSVAH-FLAERGHKVAIVEKQQIASEASKAAAGLLGVQAEWDEYD 60
Query: 139 -IWDLALRSNKLWKMLADSLRDQ-GLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLC 196
++DLA S ++ LA+ LR++ G+D IG+++ G I + +E KER+ +
Sbjct: 61 PLFDLARESRAIFPQLAEVLREKTGID----IGYEEKGIYRIAQNEDE----KERILHIM 112
Query: 197 E----AGLRAEYLSSSDLLQAEP---ELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRH 249
+ G + +L+ L + EP E ++G A + P D + A + K H
Sbjct: 113 DWQQKTGEDSYFLTGDRLREQEPYLSESIIG----AVYYPKDGHVIA----PELTKAFAH 164
Query: 250 FASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLR 309
A+ A+ Y +R + +V + TS+ + +K +V+A G WS L+ R
Sbjct: 165 SAAISG-ADIYEQTEVFDIRIENK-KVIGIVTSEGMISCEK-VVIAGGSWSTKLLGYFHR 221
Query: 310 E 310
E
Sbjct: 222 E 222
Score = 83 (34.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 377 GNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMP 436
G V+G++ + FN V+ I I +RA P L++ A++ S GLRP
Sbjct: 259 GRYVIGATMKPHTFNKTVQPESITSILERAYTILPALKE---AEWESTWA---GLRPQSN 312
Query: 437 DGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
P +G + ++ TGH G+ L+ + + +AD++
Sbjct: 313 HEAPYMGEHEEIKGLYACTGHYRNGILLSPVSGQYMADLI 352
>UNIPROTKB|F1PKA8 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0006546 "glycine catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 OMA:REVGKMI GeneTree:ENSGT00530000063120
EMBL:AAEX03002116 EMBL:AAEX03002117 EMBL:AAEX03002118
Ensembl:ENSCAFT00000014548 Uniprot:F1PKA8
Length = 838
Score = 114 (45.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 67/252 (26%), Positives = 107/252 (42%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 35 VSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYTSIKLYEKL 92
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLL 211
+ + G QV+G+ Q GS+ I TP V + E Q+ G A +Y+ + +
Sbjct: 93 EE---ETG----QVVGFHQPGSIRIATTP---VRVDEFKYQMTRTGWHATEQYIIGPEKI 142
Query: 212 QAE-PELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-R 269
Q P L + + + P D +D + G R + + +Y PVT L R
Sbjct: 143 QEMFPLLNMDKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLKYPA----PVTSLKPR 198
Query: 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-V 319
S+ T +VE Q S IV AAG W+ G ++ H L+ + + IP V
Sbjct: 199 SDGTWDVETPQGSVRA----NRIVNAAGFWAREVGKMVGLEHPLIPVQHQYVVTSTIPEV 254
Query: 320 KPRKGHLLVLEN 331
K K L VL +
Sbjct: 255 KALKRELPVLRD 266
Score = 92 (37.4 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 388 AGFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGP 444
AGF E+ ++ +DRI + A E P L+ AD I+ + G Y PD P++GP
Sbjct: 304 AGFGKELFESDLDRIMEHVEVAMEMVPVLKK---ADIIN---IVNGPITYSPDILPMVGP 357
Query: 445 VPGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 358 HQGIRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 389
>UNIPROTKB|F1PK75 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0006546 "glycine catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 GeneTree:ENSGT00530000063120 EMBL:AAEX03002116
EMBL:AAEX03002117 EMBL:AAEX03002118 Ensembl:ENSCAFT00000014573
Uniprot:F1PK75
Length = 794
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 65/238 (27%), Positives = 102/238 (42%)
Query: 108 VAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQV 167
V +++K +G+T G H PG + + S KL++ L + + G QV
Sbjct: 4 VVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYTSIKLYEKLEE---ETG----QV 54
Query: 168 IGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLLQAE-PELMVGEDSR 224
+G+ Q GS+ I TP V + E Q+ G A +Y+ + +Q P L + +
Sbjct: 55 VGFHQPGSIRIATTP---VRVDEFKYQMTRTGWHATEQYIIGPEKIQEMFPLLNMDKILA 111
Query: 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-RSNSTGEVEAVQTSK 283
+ P D +D + G R + + +Y PVT L RS+ T +VE Q S
Sbjct: 112 GLYNPGDGHIDPYSLTMALAAGARKYGALLKYPA----PVTSLKPRSDGTWDVETPQGSV 167
Query: 284 NTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-VKPRKGHLLVLEN 331
IV AAG W+ G ++ H L+ + + IP VK K L VL +
Sbjct: 168 RA----NRIVNAAGFWAREVGKMVGLEHPLIPVQHQYVVTSTIPEVKALKRELPVLRD 221
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 388 AGFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGP 444
AGF E+ ++ +DRI + A E P L+ AD I+ + G Y PD P++GP
Sbjct: 259 AGFGKELFESDLDRIMEHVEVAMEMVPVLKK---ADIIN---IVNGPITYSPDILPMVGP 312
Query: 445 VPGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 313 HQGIRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 344
>ASPGD|ASPL0000068452 [details] [associations]
symbol:AN7324 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR006076
Pfam:PF01266 GO:GO:0016491 EMBL:BN001304 EMBL:AACD01000127
eggNOG:COG0665 OrthoDB:EOG4G4KZH RefSeq:XP_680593.1
ProteinModelPortal:Q5AWK6 EnsemblFungi:CADANIAT00000111
GeneID:2870048 KEGG:ani:AN7324.2 HOGENOM:HOG000168020 OMA:NNELWIG
Uniprot:Q5AWK6
Length = 393
Score = 127 (49.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 53/227 (23%), Positives = 104/227 (45%)
Query: 80 HTFDVXXXXXXXXXLTIARQLLVGSD-LSVAVVDKVVP-CSGATGAGQGYIWMVHRTPGS 137
HT+DV +A L + +D VAV+++ + +G+TG G++ + S
Sbjct: 5 HTYDVVIVGGGIVGSALAYFLSLSNDGKKVAVIERDLSRLNGSTGYAPGFVGQFNE---S 61
Query: 138 EIWDLALRSNKLWKMLADSLRDQGLDPLQVIG-WKQTGSLLIGRTPEELVMLKERVKQLC 196
E+ L ++ DS+ + L+V G + Q G L + + + L+ R++
Sbjct: 62 EV---------LTRLAIDSVGEY----LKVPGGFDQVGGLEVATSTAGVEKLRWRLETAR 108
Query: 197 EAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRY 256
E GL+AE +S+ + +L+ G++ A + P D + Y + ++ R
Sbjct: 109 ERGLKAELISAQRAAEMAHDLVKGDNVSALYFPADGTANPAAITGYFQS-----EARARG 163
Query: 257 AEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303
EF V+ + R + G V+ V T + +++ +V+A G W+ +L
Sbjct: 164 VEFVEGDVSEVCRGS--GRVKGVMTFSGFIPAER-VVLATGIWARNL 207
Score = 66 (28.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 400 DRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEG 459
D RA F P+ +L + R+ GL PD P++G +PG +++A
Sbjct: 282 DTTLHRALRFIPEKTNL------APREKFNGLFSMTPDNMPLVGEIPGTEGLYIAAA--- 332
Query: 460 LGLSLALGTAELVADMV 476
+ ++ A G+A+ + M+
Sbjct: 333 VWVTHAAGSAKFLTQMI 349
>UNIPROTKB|F1RF50 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
OMA:REVGKMI GO:GO:0047865 GeneTree:ENSGT00530000063120
EMBL:CU468550 Ensembl:ENSSSCT00000015413 ArrayExpress:F1RF50
Uniprot:F1RF50
Length = 866
Score = 115 (45.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 67/252 (26%), Positives = 107/252 (42%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 62 VSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYDSIKLYEKL 119
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLL 211
+ + G QV+G+ Q GS+ I TP V + E Q+ G A +Y+ + +
Sbjct: 120 EE---ETG----QVVGFHQPGSIRIATTP---VRVDEFKYQMTRTGWHATEQYIIGPEKI 169
Query: 212 QAE-PELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-R 269
Q P L + + + P D +D + G R + + +Y PVT L R
Sbjct: 170 QEMFPLLNMNKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLKYPA----PVTSLKPR 225
Query: 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-V 319
S+ T +VE Q S IV AAG W+ G ++ H L+ + + IP V
Sbjct: 226 SDGTWDVETPQGSMRA----NRIVNAAGFWAREVGQMIGLEHPLIPVQHQYVVTSTIPEV 281
Query: 320 KPRKGHLLVLEN 331
K K L VL +
Sbjct: 282 KALKRELPVLRD 293
Score = 87 (35.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 389 GFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI + A E P L+ AD I+ + G Y PD P++GP
Sbjct: 332 GFGKELFESDLDRIMEHVEAAMEMVPVLKK---ADIIN---IVNGPITYSPDILPMVGPH 385
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 386 QGVRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 416
>UNIPROTKB|Q9UI17 [details] [associations]
symbol:DMGDH "Dimethylglycine dehydrogenase, mitochondrial"
species:9606 "Homo sapiens" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0006546 "glycine catabolic process"
evidence=IEA] [GO:0006579 "amino-acid betaine catabolic process"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IMP]
[GO:0019695 "choline metabolic process" evidence=NAS] [GO:0005759
"mitochondrial matrix" evidence=NAS] [GO:0047865 "dimethylglycine
dehydrogenase activity" evidence=IMP] [GO:0009055 "electron carrier
activity" evidence=NAS] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291 GO:GO:0009055
GO:GO:0050660 GO:GO:0005759 GO:GO:0019695 EMBL:AC020937
GO:GO:0006544 GO:GO:0006579 EMBL:AC008502 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 GO:GO:0005542
eggNOG:COG0665 EMBL:AF111858 EMBL:AK314736 IPI:IPI00296196
RefSeq:NP_037523.2 UniGene:Hs.655653 ProteinModelPortal:Q9UI17
SMR:Q9UI17 STRING:Q9UI17 PhosphoSite:Q9UI17 DMDM:296434575
PaxDb:Q9UI17 PRIDE:Q9UI17 DNASU:29958 Ensembl:ENST00000255189
GeneID:29958 KEGG:hsa:29958 UCSC:uc003kfs.3 CTD:29958
GeneCards:GC05M078293 H-InvDB:HIX0200737 HGNC:HGNC:24475
HPA:HPA036442 MIM:605849 MIM:605850 neXtProt:NX_Q9UI17
Orphanet:243343 PharmGKB:PA134947212 HOGENOM:HOG000251716
HOVERGEN:HBG081945 InParanoid:Q9UI17 KO:K00315 OMA:REVGKMI
OrthoDB:EOG466VK7 PhylomeDB:Q9UI17 GenomeRNAi:29958 NextBio:52675
ArrayExpress:Q9UI17 Bgee:Q9UI17 CleanEx:HS_DMGDH
Genevestigator:Q9UI17 GermOnline:ENSG00000132837 GO:GO:0047865
Uniprot:Q9UI17
Length = 866
Score = 109 (43.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 56/211 (26%), Positives = 89/211 (42%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 62 VSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYDSIKLYEKL 119
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLL 211
+ + G QV+G+ Q GS+ + TP V + E Q+ G A +YL + +
Sbjct: 120 EE---ETG----QVVGFHQPGSIRLATTP---VRVDEFKYQMTRTGWHATEQYLIEPEKI 169
Query: 212 QAE-PELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCL-LR 269
Q P L + + + P D +D + G R + +Y PVT L R
Sbjct: 170 QEMFPLLNMNKVLAGLYNPGDGHIDPYSLTMALAAGARKCGALLKYPA----PVTSLKAR 225
Query: 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
S+ T +VE Q S IV AAG W+
Sbjct: 226 SDGTWDVETPQGSMRA----NRIVNAAGFWA 252
Score = 91 (37.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 389 GFNTEVEQTIIDRIW---KRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI K A E P L+ AD I+ V G Y PD P++GP
Sbjct: 332 GFGKELFESDLDRIMEHIKAAMEMVPVLKK---ADIIN---VVNGPITYSPDILPMVGPH 385
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 386 QGVRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 416
>TIGR_CMR|SPO_A0311 [details] [associations]
symbol:SPO_A0311 "FAD dependent
oxidoreductase/aminomethyl transferase" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005737
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 EMBL:CP000032 GenomeReviews:CP000032_GR
HOGENOM:HOG000251716 RefSeq:YP_165138.1 ProteinModelPortal:Q5LKS0
GeneID:3196955 KEGG:sil:SPOA0311 PATRIC:23381968 OMA:KLRCSPL
ProtClustDB:CLSK863205 Uniprot:Q5LKS0
Length = 799
Score = 125 (49.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 49/206 (23%), Positives = 88/206 (42%)
Query: 95 TIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLA 154
+IA L + V+++ SG T G + + P + + L S L+ L
Sbjct: 20 SIAYHLAREGRKDIVVLERSKLTSGTTWHAAGLVRRLR--PSATLTRLINYSIDLYGELE 77
Query: 155 DSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAE 214
R+ G Q GW QTGSL + + L +K +V GL AE + ++ +
Sbjct: 78 ---RETG----QATGWTQTGSLTLATNTDRLTNIKRQVSLGRAFGLEAEVVDANRAQELW 130
Query: 215 PELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTG 274
P + V + A + P D +++ + KG +K R + D L+ G
Sbjct: 131 PLIEVDDVIGAVWSPADGRVNPSDVALALSKG-----AKARGVHLFEDTAVTGLKKKG-G 184
Query: 275 EVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ AV+ ++ + +++ +V+A G WS
Sbjct: 185 RISAVEVGEHVIEAEE-VVIACGLWS 209
Score = 71 (30.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 48/211 (22%), Positives = 87/211 (41%)
Query: 274 GEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFN 333
G + AV+ ++ + +++ +V+A G WS RE + + P L E++
Sbjct: 184 GRISAVEVGEHVIEAEE-VVIACGLWS--------REVAAMAGAHM-P----LYACEHYY 229
Query: 334 SLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFA-GFNT 392
L A ++A G H TL+ + A DV G L++GS A G +T
Sbjct: 230 ILTKPLAEVQALGPGAHLPTLNDQDAY--------LYARDDVEG-LLVGSFEPHAKGIST 280
Query: 393 E-----VEQTIIDRIWKRAAEFYPK-LRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVP 446
+ ++D W LR + + RK+ G + D + ++G P
Sbjct: 281 KDLPANFSFDLLDEDWDHFMPMMENALRRIPALETAEVRKLLNGPESFTLDSQFMLGESP 340
Query: 447 GLSKVFLATGHEGLGLSLALGTAELVADMVL 477
+ +FL G G++LA G +A+ ++
Sbjct: 341 EVPGLFLMGGMNSTGIALAGGAGRAMAEWII 371
>TIGR_CMR|BA_2715 [details] [associations]
symbol:BA_2715 "oxidoreductase, DadA family" species:198094
"Bacillus anthracis str. Ames" [GO:0008152 "metabolic process"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
InterPro:IPR006076 Pfam:PF01266 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016491 KO:K00285
RefSeq:NP_845069.1 RefSeq:YP_019355.1 RefSeq:YP_028789.1
ProteinModelPortal:Q81PT2 IntAct:Q81PT2 DNASU:1087511
EnsemblBacteria:EBBACT00000011003 EnsemblBacteria:EBBACT00000014153
EnsemblBacteria:EBBACT00000022853 GeneID:1087511 GeneID:2819380
GeneID:2849909 KEGG:ban:BA_2715 KEGG:bar:GBAA_2715 KEGG:bat:BAS2529
HOGENOM:HOG000042036 OMA:ATHENDT ProtClustDB:CLSK887838
BioCyc:BANT260799:GJAJ-2594-MONOMER
BioCyc:BANT261594:GJ7F-2688-MONOMER Uniprot:Q81PT2
Length = 371
Score = 116 (45.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 377 GNLVLGSSRQF-AGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G++V+G++ + GF+ V + ++ +A P L + + + R+G RP+
Sbjct: 258 GHVVIGATHENETGFDHRVTAGGLHEVFHKALTVAPGLENATMLE------TRVGFRPFT 311
Query: 436 PDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAVQG 492
P PVIGP+P + +A G GL+ +A + L P+++D + V G
Sbjct: 312 PGFLPVIGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVTG 368
Score = 71 (30.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 46/216 (21%), Positives = 96/216 (44%)
Query: 101 LVGSDLSVAVVDKVVPCSGATGAGQGYI--WMVHRTPGSEIWDLALRSN-KLWKMLADSL 157
L + +V +VD+ AT A G + W+ R ++ W ++ + + L L
Sbjct: 20 LAKAGANVTIVDRQ-QVGQATDAAAGIVCPWLSQRR--NKAWYKIVKGGARYYSSLIQQL 76
Query: 158 RDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERV-KQLCEAGLRAEY--LSSSDLLQAE 214
+ G G+ + G++ + ++L ++ER K+ +A E LS+ + +
Sbjct: 77 EEDGETDT---GYNRVGAISLHIDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLF 133
Query: 215 PELMVGEDSRAAFLPYDSQLDA-MLAVAYIEKGNRHFAS--KGRYAEFYHDPVTCLLRSN 271
P L E+ + ++++ +L A I +H A+ KG D V L+R
Sbjct: 134 PAL--SEEYSCVHISGAARVNGRLLRNALISAAKKHGATFIKG-------DAV--LVREG 182
Query: 272 STGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDL 307
+ + V+ + T+ ++K ++V AG W+ +++ L
Sbjct: 183 N--HITGVKVNDETILAEK-VIVTAGAWANEILNPL 215
>MGI|MGI:1921379 [details] [associations]
symbol:Dmgdh "dimethylglycine dehydrogenase precursor"
species:10090 "Mus musculus" [GO:0004047 "aminomethyltransferase
activity" evidence=IEA] [GO:0005542 "folic acid binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006544 "glycine metabolic
process" evidence=ISO] [GO:0006546 "glycine catabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0047865 "dimethylglycine dehydrogenase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO]
[GO:0055114 "oxidation-reduction process" evidence=ISO]
InterPro:IPR006076 InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571
UniPathway:UPA00291 MGI:MGI:1921379 GO:GO:0005739 GO:GO:0050660
EMBL:AC131739 GO:GO:0006579 EMBL:CT030023 GO:GO:0004047
GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669 GO:GO:0005542
eggNOG:COG0665 CTD:29958 HOGENOM:HOG000251716 HOVERGEN:HBG081945
KO:K00315 OMA:REVGKMI OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:AK004755
EMBL:BC024126 IPI:IPI00120123 RefSeq:NP_083048.1 UniGene:Mm.21789
ProteinModelPortal:Q9DBT9 SMR:Q9DBT9 STRING:Q9DBT9
PhosphoSite:Q9DBT9 PaxDb:Q9DBT9 PRIDE:Q9DBT9
Ensembl:ENSMUST00000048001 GeneID:74129 KEGG:mmu:74129
UCSC:uc007rll.1 GeneTree:ENSGT00530000063120 InParanoid:B1B1D0
NextBio:339854 Bgee:Q9DBT9 CleanEx:MM_DMGDH Genevestigator:Q9DBT9
GermOnline:ENSMUSG00000042102 Uniprot:Q9DBT9
Length = 869
Score = 104 (41.7 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 70/287 (24%), Positives = 115/287 (40%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 55 VSLAYHLAKAGMRDVVLMEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYDSIKLYERL 112
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLL 211
+ + G QV+G+ Q GS+ + TP V + E Q+ A +Y+ + +
Sbjct: 113 EE---ETG----QVVGFHQPGSIRLATTP---VRVDEFKYQMTRTNWHATEQYIIEPEKI 162
Query: 212 -QAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-R 269
+ P L + + + P D +D + G R + + +Y PVT L R
Sbjct: 163 HELFPLLNMNKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLKYPA----PVTSLKPR 218
Query: 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-V 319
+ T +VE Q S IV AAG W+ G ++ H L+ + + IP V
Sbjct: 219 PDGTWDVETPQGSVRA----NRIVNAAGFWAREVGKMIGLDHPLIPVQHQYVVTSTIPEV 274
Query: 320 KPRKGHLLVLENFNS---LKLNHASMEAG-YVGHHDLTLHPGQVNHG 362
K K L VL + L+ + G Y + L V HG
Sbjct: 275 KALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVTHG 321
Score = 93 (37.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 31/92 (33%), Positives = 48/92 (52%)
Query: 389 GFNTEVEQTIIDRI---WKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI + A E P L+ AD I+ V G Y PD P++GP
Sbjct: 325 GFGKELFESDLDRISDHLEAAMEMIPVLKK---ADIIN---VVNGPITYSPDILPMVGPH 378
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++ATG G G+ A G + ++D +L
Sbjct: 379 QGVRNYWVATGF-GYGIIHAGGVGKFLSDWIL 409
>TIGR_CMR|SPO_A0168 [details] [associations]
symbol:SPO_A0168 "oxidoreductase, FAD-binding"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic
process" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=ISS] InterPro:IPR006076 Pfam:PF01266 GO:GO:0016491
EMBL:CP000032 GenomeReviews:CP000032_GR KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_164999.1 ProteinModelPortal:Q5LL59
GeneID:3196816 KEGG:sil:SPOA0168 PATRIC:23381670 OMA:GVISPWS
ProtClustDB:CLSK747532 Uniprot:Q5LL59
Length = 421
Score = 141 (54.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 47/152 (30%), Positives = 70/152 (46%)
Query: 339 HASMEAGYVGHHDLTLHPG-QVNHGQI-LSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
H +EA G+H PG +NH + + A++ G V G++ +FAG + + +
Sbjct: 265 HIPLEAER-GYHVTFTKPGITLNHSVMDAEMKFVASSMTDGLRVAGTA-EFAGLDAALNK 322
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+D + + A P L A + G RP +PD P IG V GL + A G
Sbjct: 323 RRLDGLVRLACRLSPDLTAEPHATWS-------GQRPSLPDSLPCIGEVEGLPGLVAAFG 375
Query: 457 HEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
H GL +A T ELVAD+V D +P+
Sbjct: 376 HSHYGLMMAPKTGELVADIVTGRMANTDLSPY 407
>TIGR_CMR|CPS_2746 [details] [associations]
symbol:CPS_2746 "oxidoreductase, FAD-dependent"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008152
"metabolic process" evidence=ISS] [GO:0016491 "oxidoreductase
activity" evidence=ISS] InterPro:IPR006076 Pfam:PF01266
GO:GO:0016491 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0665 KO:K00285 RefSeq:YP_269458.1
ProteinModelPortal:Q480R1 STRING:Q480R1 GeneID:3520376
KEGG:cps:CPS_2746 PATRIC:21468529 HOGENOM:HOG000217451 OMA:FGHHHLG
ProtClustDB:CLSK938195 BioCyc:CPSY167879:GI48-2807-MONOMER
Uniprot:Q480R1
Length = 416
Score = 92 (37.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 430 GLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFA 489
G R +PD P+I P ++ A G++ LGL+ A +AELV ++ ++ V+ PF
Sbjct: 353 GYRSTLPDSLPIIDKHPHYDRLLFAFGNQHLGLTQAAVSAELVVSLMTSSSQFVNLEPFR 412
Query: 490 V 490
V
Sbjct: 413 V 413
Score = 91 (37.1 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 44/179 (24%), Positives = 81/179 (45%)
Query: 172 QTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGED-SRAAFLPY 230
Q+G LL+ + ++L K + + G++ E + L Q EPE + E+ + A + P
Sbjct: 138 QSGYLLVWESEDKLEDAKAHAAHMGQWGIKTELVQGKRLKQLEPE--IAENINHALYFPQ 195
Query: 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKK 290
++ + I F + G F V ++ + T +V +QT T+
Sbjct: 196 AYRVKEPYELTNILFSA--FEANG--GTFIQKAVDGIVPN--TNKV-LIQTKMATIEFDY 248
Query: 291 AIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNH--ASMEAGYV 347
AI+ G WS L+ L + L++P++ +G+ L ++ +KLNH S E +V
Sbjct: 249 AII-CTGAWSKKLLQ-L-----VGLEVPLEAERGYHLTIDA-KDIKLNHPIGSAERRFV 299
>UNIPROTKB|F1MDJ6 [details] [associations]
symbol:DMGDH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
OMA:REVGKMI GO:GO:0047865 GeneTree:ENSGT00530000063120
EMBL:DAAA02027819 IPI:IPI00715285 Ensembl:ENSBTAT00000036611
Uniprot:F1MDJ6
Length = 866
Score = 104 (41.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 66/252 (26%), Positives = 109/252 (43%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 62 VSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYYSIKLYEKL 119
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRA--EYLSSSDLL 211
+ + G QV+G+ Q GS+ I TP V + E Q+ A +Y+ + +
Sbjct: 120 EE---ETG----QVVGFHQPGSIRIATTP---VRVDEFKYQMTRTRWHATEQYIIEPEKI 169
Query: 212 QAE-PELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-R 269
Q P L + + + P D +D + G R + + +Y PVT L R
Sbjct: 170 QEMFPLLNMNKILAGLYNPGDGHIDPYSLTMALAAGARKYGALLKYPA----PVTSLKPR 225
Query: 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-V 319
S+ T +VE T ++ + + IV AAG W+ G ++ H L+ + I IP V
Sbjct: 226 SDGTWDVE---TPHGSMRANR-IVNAAGFWAREVGKMIGLEHPLIPVQHQYIITSTIPEV 281
Query: 320 KPRKGHLLVLEN 331
K K L VL +
Sbjct: 282 KALKRELPVLRD 293
Score = 86 (35.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 389 GFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI + A + P L+ AD I ++ G Y PD P++GP
Sbjct: 332 GFGKELFESDLDRIMEHVEAAMDLVPVLKK---ADII---RIVNGPITYSPDILPMVGPH 385
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 386 QGVRNYWVAVGF-GYGIIHAGGVGKYLSDWIL 416
>RGD|620453 [details] [associations]
symbol:Dmgdh "dimethylglycine dehydrogenase" species:10116
"Rattus norvegicus" [GO:0004047 "aminomethyltransferase activity"
evidence=IEA] [GO:0005542 "folic acid binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA;TAS] [GO:0006544
"glycine metabolic process" evidence=ISO] [GO:0006546 "glycine
catabolic process" evidence=IEA] [GO:0006579 "amino-acid betaine
catabolic process" evidence=IEA] [GO:0019695 "choline metabolic
process" evidence=TAS] [GO:0042426 "choline catabolic process"
evidence=TAS] [GO:0047865 "dimethylglycine dehydrogenase activity"
evidence=IEA;ISO;IDA;TAS] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IDA;TAS] InterPro:IPR006076 InterPro:IPR006222
Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291 RGD:620453
GO:GO:0005739 GO:GO:0050660 GO:GO:0042426 GO:GO:0006579
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
GO:GO:0005542 eggNOG:COG0665 HOGENOM:HOG000251716
HOVERGEN:HBG081945 OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:X55995
IPI:IPI00207941 PIR:S16133 UniGene:Rn.3646
ProteinModelPortal:Q63342 STRING:Q63342 PhosphoSite:Q63342
PRIDE:Q63342 UCSC:RGD:620453 InParanoid:Q63342
BioCyc:MetaCyc:MONOMER-16117 BRENDA:1.5.99.2 ArrayExpress:Q63342
Genevestigator:Q63342 GermOnline:ENSRNOG00000023588 Uniprot:Q63342
Length = 857
Score = 103 (41.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 67/284 (23%), Positives = 111/284 (39%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 55 VSLAYHLAKAGMRDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYDSIKLYERL 112
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQA 213
+ + G QV+G+ Q GS+ + TPE + K ++ + + + +
Sbjct: 113 EE---ETG----QVVGFHQPGSIRLATTPERVDEFKYQMTRTNWHATEQYIIEPEKIHEL 165
Query: 214 EPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-RSNS 272
P L + + + P D +D + G R + +Y PVT L R +
Sbjct: 166 FPLLNMDKILAGLYNPGDGHIDPYSLTMALATGARKYGVLLKYPA----PVTSLKPRPDG 221
Query: 273 TGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-VKPR 322
T +VE Q S IV AAG W+ G ++ H L+ + + IP VK
Sbjct: 222 TWDVETPQGSVRA----NRIVNAAGFWAREVGKMIGLDHPLIPVQHQYVVTSTIPEVKAL 277
Query: 323 KGHLLVLENFNS---LKLNHASMEAG-YVGHHDLTLHPGQVNHG 362
K L VL + L+ + G Y + L V HG
Sbjct: 278 KRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVAHG 321
Score = 86 (35.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 389 GFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI + A E P L+ AD I+ + G Y PD P++GP
Sbjct: 325 GFGKELFESDLDRITEHVEAAMEMVPVLKK---ADIIN---IVNGPITYSPDILPMVGPH 378
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 379 QGVRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 409
>UNIPROTKB|Q63342 [details] [associations]
symbol:Dmgdh "Dimethylglycine dehydrogenase, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0004047
"aminomethyltransferase activity" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 UniPathway:UPA00291
RGD:620453 GO:GO:0005739 GO:GO:0050660 GO:GO:0042426 GO:GO:0006579
GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977 Pfam:PF08669
GO:GO:0005542 eggNOG:COG0665 HOGENOM:HOG000251716
HOVERGEN:HBG081945 OrthoDB:EOG466VK7 GO:GO:0047865 EMBL:X55995
IPI:IPI00207941 PIR:S16133 UniGene:Rn.3646
ProteinModelPortal:Q63342 STRING:Q63342 PhosphoSite:Q63342
PRIDE:Q63342 UCSC:RGD:620453 InParanoid:Q63342
BioCyc:MetaCyc:MONOMER-16117 BRENDA:1.5.99.2 ArrayExpress:Q63342
Genevestigator:Q63342 GermOnline:ENSRNOG00000023588 Uniprot:Q63342
Length = 857
Score = 103 (41.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 67/284 (23%), Positives = 111/284 (39%)
Query: 94 LTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKML 153
+++A L V +++K +G+T G H PG + + S KL++ L
Sbjct: 55 VSLAYHLAKAGMRDVVLLEKSELTAGSTWHAAGLTTYFH--PGINLKKIHYDSIKLYERL 112
Query: 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQA 213
+ + G QV+G+ Q GS+ + TPE + K ++ + + + +
Sbjct: 113 EE---ETG----QVVGFHQPGSIRLATTPERVDEFKYQMTRTNWHATEQYIIEPEKIHEL 165
Query: 214 EPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLL-RSNS 272
P L + + + P D +D + G R + +Y PVT L R +
Sbjct: 166 FPLLNMDKILAGLYNPGDGHIDPYSLTMALATGARKYGVLLKYPA----PVTSLKPRPDG 221
Query: 273 TGEVEAVQTSKNTLYSKKAIVVAAGCWS---GSLM---HDLL---RETEIVLDIP-VKPR 322
T +VE Q S IV AAG W+ G ++ H L+ + + IP VK
Sbjct: 222 TWDVETPQGSVRA----NRIVNAAGFWAREVGKMIGLDHPLIPVQHQYVVTSTIPEVKAL 277
Query: 323 KGHLLVLENFNS---LKLNHASMEAG-YVGHHDLTLHPGQVNHG 362
K L VL + L+ + G Y + L V HG
Sbjct: 278 KRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVAHG 321
Score = 86 (35.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 389 GFNTEVEQTIIDRIWKR---AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPV 445
GF E+ ++ +DRI + A E P L+ AD I+ + G Y PD P++GP
Sbjct: 325 GFGKELFESDLDRITEHVEAAMEMVPVLKK---ADIIN---IVNGPITYSPDILPMVGPH 378
Query: 446 PGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G+ ++A G G G+ A G + ++D +L
Sbjct: 379 QGVRNYWVAIGF-GYGIIHAGGVGKYLSDWIL 409
>TIGR_CMR|CPS_1447 [details] [associations]
symbol:CPS_1447 "putative D-amino acid dehydrogenase,
small subunit" species:167879 "Colwellia psychrerythraea 34H"
[GO:0006520 "cellular amino acid metabolic process" evidence=ISS]
[GO:0008718 "D-amino-acid dehydrogenase activity" evidence=ISS]
InterPro:IPR006076 Pfam:PF01266 GO:GO:0016491 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0665 KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_268189.1 ProteinModelPortal:Q485S6
STRING:Q485S6 GeneID:3521011 KEGG:cps:CPS_1447 PATRIC:21466103
OMA:CERKFIA BioCyc:CPSY167879:GI48-1528-MONOMER Uniprot:Q485S6
Length = 427
Score = 116 (45.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 379 LVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDG 438
L L + ++AG N + + AA +L + ++ +G RP +PD
Sbjct: 317 LRLAGTVEYAGLNAPANYKRAEMLKGNAAYILKRL-----PENEEKQEAWMGCRPSLPDS 371
Query: 439 KPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAVQ 491
PVI P K+F A GH+ LGL+ T +L+ +V + +++ PF ++
Sbjct: 372 LPVICQAPNHDKIFFALGHQHLGLTQGAITGKLIGQLVTGHSPEINIDPFCIR 424
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 37/157 (23%), Positives = 62/157 (39%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQ 233
GSLL+ T + ++ + AG+ + L L+ EP L + F
Sbjct: 148 GSLLVFETNDR-TKVELMYQHYLAAGIAVKLLDKRQTLELEPNLSNNINYSLYFTDVAHT 206
Query: 234 LDAMLAVAYIEKGNRHFAS-KGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAI 292
+D + + K FA KG F VT + ++ S VE + L+
Sbjct: 207 IDPLA----LSKTLAEFAMCKGM--TFQQTAVTSVTQTQSGVTVEI---DEQHLHVDHC- 256
Query: 293 VVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVL 329
V+A G WS L++ L +P++ +G+ L L
Sbjct: 257 VIACGAWSKKLLNGLNYH------LPIEAERGYSLSL 287
>TIGR_CMR|SPO_A0262 [details] [associations]
symbol:SPO_A0262 "oxidoreductase, FAD-binding"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic
process" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] InterPro:IPR006076 Pfam:PF01266 GO:GO:0016491
EMBL:CP000032 GenomeReviews:CP000032_GR KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_165091.1 ProteinModelPortal:Q5LKW7
GeneID:3196590 KEGG:sil:SPOA0262 PATRIC:23381866 OMA:GTFTPGW
ProtClustDB:CLSK863925 Uniprot:Q5LKW7
Length = 413
Score = 129 (50.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 44/142 (30%), Positives = 64/142 (45%)
Query: 350 HDLTLHPGQVNHGQILSISMTA--TTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAA 407
++ TL G N L+ S + + G + +G + + G + D + ++AA
Sbjct: 275 YNTTLPAGAFNLRTHLTFSGHGFVVSRINGGVRVGGAVELGGLDLPPNFKRADILLQKAA 334
Query: 408 EFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALG 467
F P L + +G RP MPD PVIG L V A GH LGL+ +
Sbjct: 335 RFLPGLTT-------QGGQRWMGFRPSMPDSLPVIGASARLPNVVYAFGHGHLGLTQSAA 387
Query: 468 TAELVADMVLTNPLKVDSAPFA 489
TAELVAD+V + AP+A
Sbjct: 388 TAELVADLVSDRVPALPMAPYA 409
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 279 VQTSKNTLYSKKAIVVAAGCWSGSLMHDL 307
++T+ + + + +VVAAG WS L L
Sbjct: 236 LKTAAGDILASR-VVVAAGAWSHHLARTL 263
>UNIPROTKB|Q5LTV9 [details] [associations]
symbol:SPO1303 "Fructosyl-amino acid oxidase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic
process" evidence=ISS] [GO:0016647 "oxidoreductase activity, acting
on the CH-NH group of donors, oxygen as acceptor" evidence=ISS]
InterPro:IPR006076 Pfam:PF01266 EMBL:CP000031
GenomeReviews:CP000031_GR RefSeq:YP_166546.1
ProteinModelPortal:Q5LTV9 GeneID:3193802 KEGG:sil:SPO1303
PATRIC:23375913 HOGENOM:HOG000244441 OMA:ERITEDP GO:GO:0016647
Uniprot:Q5LTV9
Length = 352
Score = 113 (44.8 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 40/116 (34%), Positives = 52/116 (44%)
Query: 377 GNLVLGS--SRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPY 434
G L LG S A + +ID + R P + L L + +G RP
Sbjct: 241 GRLYLGEIFSGGIATETLDFASGLIDELMTRLRNRLPGVEGLQL------EQAALGTRPV 294
Query: 435 MPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVL---TNPLKVDSAP 487
DG P IGPVPG ++LAT H G+ L +G ELVA VL ++PL P
Sbjct: 295 PADGLPAIGPVPGSEGLYLATMHSGVTLGPLVG--ELVAREVLEQDSDPLLAPYRP 348
Score = 49 (22.3 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 95 TIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYI 128
+IA QL V V+D+ P +GA+G G+I
Sbjct: 14 SIADQL-AARGARVTVIDRAGPGAGASGMSFGWI 46
Score = 41 (19.5 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 26/106 (24%), Positives = 43/106 (40%)
Query: 199 GLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA-MLAVAYIEKGNRHFASKGRYA 257
G + + D + EP + RA + P + + +A A + R A+ G
Sbjct: 106 GYDVTLIGADDFARLEPNV-ANPPERAIWCPSEGAAEPDKVARALL----RRAATNGARL 160
Query: 258 EFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303
+ VT L+R V + T + + +VVAAG SG+L
Sbjct: 161 ILGRE-VTGLMRRGE--RVTGIDTDLCPM-AADLVVVAAGIRSGAL 202
>TIGR_CMR|SPO_1303 [details] [associations]
symbol:SPO_1303 "fructosyl-amino acid oxidase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic
process" evidence=ISS] [GO:0016647 "oxidoreductase activity, acting
on the CH-NH group of donors, oxygen as acceptor" evidence=ISS]
InterPro:IPR006076 Pfam:PF01266 EMBL:CP000031
GenomeReviews:CP000031_GR RefSeq:YP_166546.1
ProteinModelPortal:Q5LTV9 GeneID:3193802 KEGG:sil:SPO1303
PATRIC:23375913 HOGENOM:HOG000244441 OMA:ERITEDP GO:GO:0016647
Uniprot:Q5LTV9
Length = 352
Score = 113 (44.8 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 40/116 (34%), Positives = 52/116 (44%)
Query: 377 GNLVLGS--SRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPY 434
G L LG S A + +ID + R P + L L + +G RP
Sbjct: 241 GRLYLGEIFSGGIATETLDFASGLIDELMTRLRNRLPGVEGLQL------EQAALGTRPV 294
Query: 435 MPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVL---TNPLKVDSAP 487
DG P IGPVPG ++LAT H G+ L +G ELVA VL ++PL P
Sbjct: 295 PADGLPAIGPVPGSEGLYLATMHSGVTLGPLVG--ELVAREVLEQDSDPLLAPYRP 348
Score = 49 (22.3 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 95 TIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYI 128
+IA QL V V+D+ P +GA+G G+I
Sbjct: 14 SIADQL-AARGARVTVIDRAGPGAGASGMSFGWI 46
Score = 41 (19.5 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 26/106 (24%), Positives = 43/106 (40%)
Query: 199 GLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA-MLAVAYIEKGNRHFASKGRYA 257
G + + D + EP + RA + P + + +A A + R A+ G
Sbjct: 106 GYDVTLIGADDFARLEPNV-ANPPERAIWCPSEGAAEPDKVARALL----RRAATNGARL 160
Query: 258 EFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303
+ VT L+R V + T + + +VVAAG SG+L
Sbjct: 161 ILGRE-VTGLMRRGE--RVTGIDTDLCPM-AADLVVVAAGIRSGAL 202
>UNIPROTKB|Q97PK1 [details] [associations]
symbol:SP_1608 "Oxidoreductase, DadA family protein"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR006076 Pfam:PF01266
GO:GO:0016491 EMBL:AE005672 GenomeReviews:AE005672_GR
HOGENOM:HOG000042036 OMA:ATHENDT PIR:C95187 RefSeq:NP_346052.1
ProteinModelPortal:Q97PK1 EnsemblBacteria:EBSTRT00000026438
GeneID:931227 KEGG:spn:SP_1608 PATRIC:19707649
ProtClustDB:CLSK877133 Uniprot:Q97PK1
Length = 367
Score = 112 (44.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 377 GNLVLGSSRQF-AGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G L LG++ + GF+ V++T++ ++ + Y L LA+ S + R+G+R Y
Sbjct: 249 GKLSLGATHENDMGFDLTVDETLLQQMEEATLTHY-----LILAEATSKSE-RVGIRAYT 302
Query: 436 PDGKPVIGPVPGLSKVFLATGHEGLGLSLA--LG--TAELVADMVLT-NPL 481
D P G VP L+ V+ A+G GL+ +G A+L+ D LT +PL
Sbjct: 303 SDFSPFFGQVPDLTGVYAASGLGSSGLTTGPIIGYHLAQLIQDKELTLDPL 353
Score = 50 (22.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHL 326
+++A G W G ++ L E + V+P+KG L
Sbjct: 192 VILATGAWLGDMLEPLGYEVD------VRPQKGQL 220
>TIGR_CMR|SPO_3666 [details] [associations]
symbol:SPO_3666 "oxidoreductase, FAD-binding"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008152 "metabolic
process" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] InterPro:IPR006076 Pfam:PF01266 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016491 KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_168861.1 ProteinModelPortal:Q5LM97
DNASU:3195066 GeneID:3195066 KEGG:sil:SPO3666 PATRIC:23380815
ProtClustDB:CLSK759309 Uniprot:Q5LM97
Length = 421
Score = 102 (41.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 373 TDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLR 432
T + G L L +F G + + I+ + + AA +P L+ AD ++ +G R
Sbjct: 302 TPMEGRLRLAGVVEFGGLDAGPSRAPIELLKRSAAAVFPGLK----ADEVTEW---LGHR 354
Query: 433 PYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFA 489
P D PVIG +P L F GH +GL+ T ++A ++ +D + ++
Sbjct: 355 PAPADSIPVIGELPHLKGAFTGFGHHHVGLTGGPKTGRILAQLIAGRQPNIDLSVYS 411
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 242 YIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301
Y++ H + G + V + R N G V V+ T+ A V+A G WSG
Sbjct: 205 YVKDLAAHVVASG--GQLIQADVEDIAREN--GRVTGVRAGGRTIPCDAA-VIATGVWSG 259
Query: 302 SLMHDLLRETEIVLDIPVKPRKGHLLVLENFN 333
L L L++P++ +G+ + N N
Sbjct: 260 PLARKL------GLEVPLEAERGYHIEFWNPN 285
>UNIPROTKB|F1S0R9 [details] [associations]
symbol:SARDH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0006546 "glycine
catabolic process" evidence=IEA] [GO:0004047
"aminomethyltransferase activity" evidence=IEA] InterPro:IPR006076
InterPro:IPR006222 Pfam:PF01266 Pfam:PF01571 GO:GO:0005739
GO:GO:0016491 GO:GO:0004047 GO:GO:0006546 InterPro:IPR013977
Pfam:PF08669 GeneTree:ENSGT00530000063120 CTD:1757 KO:K00314
OMA:PHHDVIK EMBL:CU572088 RefSeq:NP_001240851.1 UniGene:Ssc.32260
Ensembl:ENSSSCT00000006311 GeneID:100154338 KEGG:ssc:100154338
Uniprot:F1S0R9
Length = 918
Score = 102 (41.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 47/191 (24%), Positives = 87/191 (45%)
Query: 118 SGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLL 177
SG T G +W + R E+ +L + ++ + D + GL GW Q G L
Sbjct: 103 SGTTWHTAGLLWQL-RPSDVEV-ELLAHTRRV--VSRDLEEETGLHT----GWIQNGGLF 154
Query: 178 IGRTPEELVMLKERVKQLCEA-GLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA 236
I + L K R+ L +A G+ + LS ++ P + V + ++P+D +D
Sbjct: 155 IASNRQRLDEYK-RLMSLGKAYGVESHVLSPAETKALYPLMNVDDLYGTLYVPHDGTMDP 213
Query: 237 MLAVAYIEKGNRHFASKGRYAEFYHD-PVTCL-LRSNSTG--EVEAVQTSKNTLYSKKAI 292
+ + A+ R A+ + PVT + +R++ G V AV+T+ ++ + +
Sbjct: 214 AGTCTTLSR-----AATARGAQVIENCPVTGIRVRTDDFGVRRVAAVETAHGSIQTP-CV 267
Query: 293 VVAAGCWSGSL 303
V AG W+G++
Sbjct: 268 VNCAGVWAGAV 278
Score = 70 (29.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 430 GLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
G + PD KP++G P L FL G G+ L G + +A ++
Sbjct: 382 GPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIV 429
>UNIPROTKB|Q5LWB4 [details] [associations]
symbol:SPO0428 "Amino acid deaminase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006520 "cellular
amino acid metabolic process" evidence=ISS] [GO:0019239 "deaminase
activity" evidence=ISS] InterPro:IPR006076 Pfam:PF01266
GO:GO:0006520 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016491
GO:GO:0019239 RefSeq:YP_165691.1 ProteinModelPortal:Q5LWB4
GeneID:3192889 KEGG:sil:SPO0428 PATRIC:23374119
HOGENOM:HOG000042040 OMA:PREIPLM Uniprot:Q5LWB4
Length = 443
Score = 102 (41.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 31/96 (32%), Positives = 39/96 (40%)
Query: 393 EVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVF 452
E Q + R W A +P L D + G+ PD PVI VP L +F
Sbjct: 337 EPSQKHLRRAWNAARRAFPML------DGSEIMQSWAGMIDVTPDAIPVISDVPALPGLF 390
Query: 453 LATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
+ATG G G + G LVAD+ VD F
Sbjct: 391 IATGFSGHGFGIGPGAGRLVADLATGETPVVDPWAF 426
Score = 60 (26.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 48/212 (22%), Positives = 88/212 (41%)
Query: 101 LVGSDLSVAVVDK---VVPCS-GATGAGQ-----GYIWMVHRTPGSEIWDLALRSNKLWK 151
++G ++ + ++ V+ C G GA Q G++ + R P EI L + ++W
Sbjct: 28 IIGVSAALELAERGVSVLLCEKGQIGAEQSSRNWGWVRLGMRDP-REI-PLMQAALEIWD 85
Query: 152 MLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLL 211
L D L G + G+ ++G L + L+ + + RA + ++L
Sbjct: 86 GLDDRL---G----RSTGFVRSGILFAASGRRSVGNLERWARHVDGLETRARMIEGAELA 138
Query: 212 QAEPELMVGEDSRAA-FLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS 270
P + RAA F+P D + + A + +G R R A+ C +RS
Sbjct: 139 AHLPGH--SKLPRAALFMPQDGRAEPQWAAPAVAEGARD-----RGAQIL---TACAVRS 188
Query: 271 NST--GEVEAVQTSKNTLYSKKAIVVAAGCWS 300
G+V V T + + + +++A G WS
Sbjct: 189 VDVEAGQVTGVYTERGRVACSR-VILAGGAWS 219
>TIGR_CMR|SPO_0428 [details] [associations]
symbol:SPO_0428 "amino acid deaminase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006520 "cellular
amino acid metabolic process" evidence=ISS] [GO:0019239 "deaminase
activity" evidence=ISS] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=ISS] InterPro:IPR006076 Pfam:PF01266
GO:GO:0006520 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016491
GO:GO:0019239 RefSeq:YP_165691.1 ProteinModelPortal:Q5LWB4
GeneID:3192889 KEGG:sil:SPO0428 PATRIC:23374119
HOGENOM:HOG000042040 OMA:PREIPLM Uniprot:Q5LWB4
Length = 443
Score = 102 (41.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 31/96 (32%), Positives = 39/96 (40%)
Query: 393 EVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVF 452
E Q + R W A +P L D + G+ PD PVI VP L +F
Sbjct: 337 EPSQKHLRRAWNAARRAFPML------DGSEIMQSWAGMIDVTPDAIPVISDVPALPGLF 390
Query: 453 LATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
+ATG G G + G LVAD+ VD F
Sbjct: 391 IATGFSGHGFGIGPGAGRLVADLATGETPVVDPWAF 426
Score = 60 (26.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 48/212 (22%), Positives = 88/212 (41%)
Query: 101 LVGSDLSVAVVDK---VVPCS-GATGAGQ-----GYIWMVHRTPGSEIWDLALRSNKLWK 151
++G ++ + ++ V+ C G GA Q G++ + R P EI L + ++W
Sbjct: 28 IIGVSAALELAERGVSVLLCEKGQIGAEQSSRNWGWVRLGMRDP-REI-PLMQAALEIWD 85
Query: 152 MLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLL 211
L D L G + G+ ++G L + L+ + + RA + ++L
Sbjct: 86 GLDDRL---G----RSTGFVRSGILFAASGRRSVGNLERWARHVDGLETRARMIEGAELA 138
Query: 212 QAEPELMVGEDSRAA-FLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS 270
P + RAA F+P D + + A + +G R R A+ C +RS
Sbjct: 139 AHLPGH--SKLPRAALFMPQDGRAEPQWAAPAVAEGARD-----RGAQIL---TACAVRS 188
Query: 271 NST--GEVEAVQTSKNTLYSKKAIVVAAGCWS 300
G+V V T + + + +++A G WS
Sbjct: 189 VDVEAGQVTGVYTERGRVACSR-VILAGGAWS 219
>UNIPROTKB|Q5LW01 [details] [associations]
symbol:SPO0543 "Uncharacterized protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000103
InterPro:IPR006076 Pfam:PF01266 PRINTS:PR00469 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016491 KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_165804.1 ProteinModelPortal:Q5LW01
GeneID:3194211 KEGG:sil:SPO0543 PATRIC:23374351 OMA:ILHAYGH
Uniprot:Q5LW01
Length = 417
Score = 118 (46.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 429 IGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
+G RP MPD PVIGP P +V A GH+ +GL+L T ++VAD+ + F
Sbjct: 352 LGHRPTMPDSLPVIGPSPSSDRVIFAFGHQHIGLTLGGLTGKVVADLAQQRSPTCNLGDF 411
Query: 489 AVQ 491
A Q
Sbjct: 412 APQ 414
Score = 42 (19.8 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 257 AEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
A FY P+ LR T E+ A+ NT
Sbjct: 299 AGFYATPMAQGLRIAGTVEINAIDAPFNT 327
>TIGR_CMR|SPO_0543 [details] [associations]
symbol:SPO_0543 "conserved hypothetical protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000103 InterPro:IPR006076 Pfam:PF01266 PRINTS:PR00469
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0016491 KO:K00285
HOGENOM:HOG000217451 RefSeq:YP_165804.1 ProteinModelPortal:Q5LW01
GeneID:3194211 KEGG:sil:SPO0543 PATRIC:23374351 OMA:ILHAYGH
Uniprot:Q5LW01
Length = 417
Score = 118 (46.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 429 IGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPF 488
+G RP MPD PVIGP P +V A GH+ +GL+L T ++VAD+ + F
Sbjct: 352 LGHRPTMPDSLPVIGPSPSSDRVIFAFGHQHIGLTLGGLTGKVVADLAQQRSPTCNLGDF 411
Query: 489 AVQ 491
A Q
Sbjct: 412 APQ 414
Score = 42 (19.8 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 257 AEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
A FY P+ LR T E+ A+ NT
Sbjct: 299 AGFYATPMAQGLRIAGTVEINAIDAPFNT 327
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 495 472 0.00099 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 616 (65 KB)
Total size of DFA: 273 KB (2144 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.98u 0.11s 37.09t Elapsed: 00:00:02
Total cpu time: 36.99u 0.11s 37.10t Elapsed: 00:00:02
Start: Tue May 21 10:41:00 2013 End: Tue May 21 10:41:02 2013