BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011027
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 152/349 (43%), Gaps = 59/349 (16%)
Query: 139 IWDLALRSNKLWKMLADSLRD-QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCE 197
+D A+ S +L+K L + L G+D Q G G + + E+++ L++ +
Sbjct: 75 FFDFAMHSQRLYKGLGEELYALSGVDIRQHNG----GMFKLAFSEEDVLQLRQ-----MD 125
Query: 198 AGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAV-AYIEKGNRHFASKGRY 256
+ S ++L+ EP G+ A+F+ D ++ AY++ A+K
Sbjct: 126 DLDSVSWYSKEEVLEKEP-YASGDIFGASFIQDDVHVEPYFVCKAYVK------AAKMLG 178
Query: 257 AE-FYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
AE F H PV + R GE ++T +++ +VVA+G WSG ++ L
Sbjct: 179 AEIFEHTPVLHVERD---GEALFIKTPSGDVWANH-VVVASGVWSGMFF------KQLGL 228
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
+ P KG L + N + + L +HD H I+
Sbjct: 229 NNAFLPVKGECLSVWN-DDIPLTKTL-------YHD---------HCYIVPRKS------ 265
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G LV+G++ + ++ + ++ + K+A P ++++ + F + GLRP
Sbjct: 266 -GRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWA------GLRPGT 318
Query: 436 PDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVD 484
DGKP IG P S++ A GH G+ LA T L++D+++ + D
Sbjct: 319 KDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQD 367
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 152/349 (43%), Gaps = 59/349 (16%)
Query: 139 IWDLALRSNKLWKMLADSLRD-QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCE 197
+D A+ S +L+K L + L G+D Q G G + + E+++ L++ +
Sbjct: 83 FFDFAMHSQRLYKGLGEELYALSGVDIRQHNG----GMFKLAFSEEDVLQLRQ-----MD 133
Query: 198 AGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAV-AYIEKGNRHFASKGRY 256
+ S ++L+ EP G+ A+F+ D ++ AY++ A+K
Sbjct: 134 DLDSVSWYSKEEVLEKEP-YASGDIFGASFIQDDVHVEPYFVCKAYVK------AAKMLG 186
Query: 257 AE-FYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
AE F H PV + R GE ++T +++ +VVA+G WSG ++ L
Sbjct: 187 AEIFEHTPVLHVERD---GEALFIKTPSGDVWANH-VVVASGVWSGMFF------KQLGL 236
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
+ P KG L + N + + L +HD H I+
Sbjct: 237 NNAFLPVKGECLSVWN-DDIPLTKTL-------YHD---------HCYIVPRKS------ 273
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G LV+G++ + ++ + ++ + K+A P ++++ + F + GLRP
Sbjct: 274 -GRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPPIQNMKVDRFWA------GLRPGT 326
Query: 436 PDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVD 484
DGKP IG P S++ A GH G+ LA T L++D+++ + D
Sbjct: 327 KDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQD 375
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 59/349 (16%)
Query: 139 IWDLALRSNKLWKMLADSLRD-QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCE 197
+D A+ S +L+K L + L G+D Q G G + + E+++ L++ +
Sbjct: 75 FFDFAMHSQRLYKGLGEELYALSGVDIRQHNG----GMFKLAFSEEDVLQLRQ-----MD 125
Query: 198 AGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAV-AYIEKGNRHFASKGRY 256
+ S ++L+ EP G+ A+F+ D ++ AY++ A+K
Sbjct: 126 DLDSVSWYSKEEVLEKEP-YASGDIFGASFIQDDVHVEPYFVCKAYVK------AAKMLG 178
Query: 257 AE-FYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
AE F H PV L GE ++T +++ +VVA+G WSG ++ L
Sbjct: 179 AEIFEHTPV---LHVERDGEALFIKTPSGDVWANH-VVVASGVWSGMFF------KQLGL 228
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
+ P KG L + N + +A Y+
Sbjct: 229 NNAFLPVKGECLSVWNDDIPLTKTLYHDACYI------------------------VPRK 264
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G LV+G++ + ++ + ++ + K+A P ++++ + F + GLRP
Sbjct: 265 SGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWA------GLRPGT 318
Query: 436 PDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVD 484
DGKP IG P S++ A GH G+ LA T L++D+++ + D
Sbjct: 319 KDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQD 367
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 140/349 (40%), Gaps = 65/349 (18%)
Query: 145 RSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEY 204
RS +LWK ++ + G +KQTG L + EE+ K ++ + G+ +
Sbjct: 66 RSVELWKKYSE---EYGFS------FKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKL 116
Query: 205 LSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAV-AYIEKGNRHFASKGRYAEFYHDP 263
++ + + P L + E A++ P D + D A A+ K + A Y E
Sbjct: 117 ITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTE----- 171
Query: 264 VTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRK 323
V L N+ E++ V+T+K + K IVV A +L++ + I IP++P K
Sbjct: 172 VKGFLIENN--EIKGVKTNKGII--KTGIVVNATNAWANLINAM---AGIKTKIPIEPYK 224
Query: 324 GHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQIL---------SISMTATTD 374
++ + +N + Y GH LT Q HG I+ + +T T +
Sbjct: 225 HQAVITQPIKRGTINPMVISFKY-GHAYLT----QTFHGGIIGGIGYEIGPTYDLTPTYE 279
Query: 375 VIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPY 434
+ + S F ++ +I R W A +Y K
Sbjct: 280 FLREV----SYYFTKIIPALKNLLILRTW---AGYYAK---------------------- 310
Query: 435 MPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKV 483
PD P IG + L+ ++A G G G +A E+VA+++ K+
Sbjct: 311 TPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKL 359
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 136/370 (36%), Gaps = 77/370 (20%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G + L LR+ LW L+ D DP+ V ++G + +G P + L
Sbjct: 57 GEKYVPLVLRAQMLWDELSRHNED---DPIFV----RSGVINLG--PADSTFLANVAHSA 107
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
+ L E L + ++ PE+ V ++ F L + LA+ K A +
Sbjct: 108 EQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAI----KTWIQLAKEAG 163
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
A+ ++ PVT + R + G ++T+ +KKAIV A G+ + DLL E
Sbjct: 164 CAQLFNCPVTAI-RHDDDGVT--IETADGEYQAKKAIVCA-----GTWVKDLLPE----- 210
Query: 316 DIPVKP-RK--------GHLLVLENFNSL--KLNHASMEAGYVGHHDLTLHPGQVNHGQI 364
+PV+P RK G V F + +L + G+ +D L G+ N GQ+
Sbjct: 211 -LPVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAEND-ALKIGKHNGGQV 268
Query: 365 LSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDL------CL 418
+ ++ E+ + +E +P LR++ CL
Sbjct: 269 I-------------------------HSADERVPFAEVVSDGSEAFPFLRNVLPGIGCCL 303
Query: 419 ADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLT 478
PD +I +PG L TG G G A E+ AD
Sbjct: 304 YGAACTYDNS-------PDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQD 356
Query: 479 NPLKVDSAPF 488
D PF
Sbjct: 357 KKSDFDLTPF 366
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 140/361 (38%), Gaps = 47/361 (13%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E ++
Sbjct: 58 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETMEAA 108
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 109 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 164
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 165 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSMGAWNSKLL------SKLNL 214
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 215 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGC-- 262
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFI--SNRKVRIG--- 430
L+LG + F +++ I+R + E LR L +++ +N +++ G
Sbjct: 263 --GLMLG----YHTFGQKIDPDTINREFGVYPEDESNLRAF-LEEYMPGANGELKRGAVC 315
Query: 431 LRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
+ D +I P S V +A G G G + G E+++ + LT + D + F++
Sbjct: 316 MYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSI 375
Query: 491 Q 491
Sbjct: 376 N 376
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 133/374 (35%), Gaps = 73/374 (19%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E ++
Sbjct: 58 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETMEAA 108
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 109 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 164
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 165 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSMGAWNSKLL------SKLNL 214
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 215 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFMVEVPNGIYY---------- 254
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM 435
G G G+NT ++ D I R YP+ +R L YM
Sbjct: 255 -GFPSFGGCGLKLGYNTFGQKIDPDTI-NREFGVYPE----------DESNLRAFLEEYM 302
Query: 436 P------------------DGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVL 477
P D +I P S V +A G G G + G E+++ + L
Sbjct: 303 PGANGELKRGAVCMYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLAL 362
Query: 478 TNPLKVDSAPFAVQ 491
T + D + F++
Sbjct: 363 TGKTEHDISIFSIN 376
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 47/361 (13%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E ++
Sbjct: 58 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETMEAA 108
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 109 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 164
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 165 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSMGAWNSKLL------SKLNL 214
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 215 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGC-- 262
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFI--SNRKVRIG--- 430
L LG + F +++ I+R + E LR L +++ +N +++ G
Sbjct: 263 --GLKLG----YHTFGQKIDPDTINREFGVYPEDESNLRAF-LEEYMPGANGELKRGAVC 315
Query: 431 LRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
+ D +I P S V +A G G G + G E+++ + LT + D + F++
Sbjct: 316 MYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSI 375
Query: 491 Q 491
Sbjct: 376 N 376
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 47/361 (13%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E ++
Sbjct: 58 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETMEAA 108
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 109 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 164
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 165 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSMGAWNSKLL------SKLNL 214
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 215 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGC-- 262
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFI--SNRKVRIG--- 430
L LG + F +++ I+R + E LR L +++ +N +++ G
Sbjct: 263 --GLRLG----YHTFGQKIDPDTINREFGVYPEDESNLRAF-LEEYMPGANGELKRGAVC 315
Query: 431 LRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
+ D +I P S V +A G G G + G E+++ + LT + D + F++
Sbjct: 316 MYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSI 375
Query: 491 Q 491
Sbjct: 376 N 376
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 139/361 (38%), Gaps = 47/361 (13%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E ++
Sbjct: 59 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETMEAA 109
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 110 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 165
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 166 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSMGAWNSKLL------SKLNL 215
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 216 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGC-- 263
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFI--SNRKVRIG--- 430
L LG + F +++ I+R + E LR L +++ +N +++ G
Sbjct: 264 --GLKLG----YHTFGQKIDPDTINREFGVYPEDESNLRAF-LEEYMPGANGELKRGAVC 316
Query: 431 LRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
+ D +I P S V +A G G G + G E+++ + LT + D + F++
Sbjct: 317 MYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSI 376
Query: 491 Q 491
Sbjct: 377 N 377
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 138/361 (38%), Gaps = 47/361 (13%)
Query: 136 GSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQL 195
G E LALRS +LW L + + +TG L+ G E + E +
Sbjct: 58 GREYVPLALRSQELWYELEKETHHK--------IFTKTGVLVFGPKGES-AFVAETXEAA 108
Query: 196 CEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGR 255
E L + L ++ + P + V E+ A F P L + + + R A
Sbjct: 109 KEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCI----RAYRELAEARG 164
Query: 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315
H V S + ++E + N Y+ ++V+ G W+ L+ +++ L
Sbjct: 165 AKVLTHTRVEDFDISPDSVKIE----TANGSYTADKLIVSXGAWNSKLL------SKLNL 214
Query: 316 DIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDV 375
DIP++P + + E S E+ Y D +V +G
Sbjct: 215 DIPLQPYRQVVGFFE----------SDESKYSNDIDFPGFXVEVPNGIYYGFPSFGGC-- 262
Query: 376 IGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFI--SNRKVRIG-LR 432
L LG + F +++ I+R + E LR L ++ +N +++ G +
Sbjct: 263 --GLKLG----YHTFGQKIDPDTINREFGVYPEDESNLRAF-LEEYXPGANGELKRGAVC 315
Query: 433 PYMP--DGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
Y D +I P S V +A G G G + G E+++ + LT + D + F++
Sbjct: 316 XYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSI 375
Query: 491 Q 491
Sbjct: 376 N 376
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 117/325 (36%), Gaps = 34/325 (10%)
Query: 170 WKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAF-L 228
+ Q G L + T L LK ++ G+ LS ++ + P L+ GE+ +
Sbjct: 84 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYP-LLDGENILGGLHV 142
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D A AV + K Y T S G V VQT+ +
Sbjct: 143 PSDGLASAARAVQLLIKRTESAGVT------YRGSTTVTGIEQSGGRVTGVQTADGVI-P 195
Query: 289 KKAIVVAAGCWS-------GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHAS 341
+V AG W G + L + V PV ++G L H
Sbjct: 196 ADIVVSCAGFWGAKIGAMIGMAVPLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQD 255
Query: 342 MEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDR 401
+ Y H D + G M D +G + + + ++ T+ D
Sbjct: 256 QDLYYREHGD------RYGIGSYAHRPMPVDVDTLGAYAPETVSEHH-MPSRLDFTLEDF 308
Query: 402 I--WKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEG 459
+ W+ + P L D + D + G+ + PDG P++G L ++A E
Sbjct: 309 LPAWEATKQLLPALADSEIEDGFN------GIFSFTPDGGPLLGESKELDGFYVA---EA 359
Query: 460 LGLSLALGTAELVADMVLTNPLKVD 484
+ ++ + G A+ +A+++ T + D
Sbjct: 360 VWVTHSAGVAKAMAELLTTGRSETD 384
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 117/325 (36%), Gaps = 34/325 (10%)
Query: 170 WKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAF-L 228
+ Q G L + T L LK ++ G+ LS ++ + P L+ GE+ +
Sbjct: 81 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYP-LLDGENILGGLHV 139
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D A AV + K Y T S G V VQT+ +
Sbjct: 140 PSDGLASAARAVQLLIKRTESAGVT------YRGSTTVTGIEQSGGRVTGVQTADGVI-P 192
Query: 289 KKAIVVAAGCWS-------GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHAS 341
+V AG W G + L + V PV ++G L H
Sbjct: 193 ADIVVSCAGFWGAKIGAMIGMAVPLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQD 252
Query: 342 MEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDR 401
+ Y H D + G M D +G + + + ++ T+ D
Sbjct: 253 QDLYYREHGD------RYGIGSYAHRPMPVDVDTLGAYAPETVSEHH-MPSRLDFTLEDF 305
Query: 402 I--WKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEG 459
+ W+ + P L D + D + G+ + PDG P++G L ++A E
Sbjct: 306 LPAWEATKQLLPALADSEIEDGFN------GIFSFTPDGGPLLGESKELDGFYVA---EA 356
Query: 460 LGLSLALGTAELVADMVLTNPLKVD 484
+ ++ + G A+ +A+++ T + D
Sbjct: 357 VWVTHSAGVAKAMAELLTTGRSETD 381
>pdb|3DXI|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
pdb|3DXI|B Chain B, Crystal Structure Of The N-Terminal Domain Of A Putative
Aldolase (Bvu_2661) From Bacteroides Vulgatus
Length = 320
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCL--LRSNSTGEVEAVQTSKNT 285
L + Y+E G R+ SK +F + PV+ L LR+ ST ++ KNT
Sbjct: 36 LPIDYLEVGYRNKPSKEYXGKFGYTPVSVLKHLRNISTKKIAIXLNEKNT 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,794,713
Number of Sequences: 62578
Number of extensions: 533019
Number of successful extensions: 1328
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 17
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)