BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011027
(495 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O85228|HCNC_PSEFL Hydrogen cyanide synthase subunit HcnC OS=Pseudomonas fluorescens
GN=hcnC PE=2 SV=1
Length = 417
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 177/443 (39%), Gaps = 83/443 (18%)
Query: 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPG----- 136
+DV+I G G+IG + A QL DL VA++D P A+ A G +W + + G
Sbjct: 5 YDVVIAGGGVIGASCAYQLSKRKDLKVALIDAKRP-GNASRASAGGLWAIGESVGLGCGV 63
Query: 137 ------------------------------SEIWDLALRSNKLWKMLADSLRDQGLDPLQ 166
+D AL+SN+L+ L L GL +
Sbjct: 64 IFFRMMSANRKREAQGSAVVVDSSTPHILPQSFFDFALQSNELYPRLHREL--MGLHNMD 121
Query: 167 VIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA 226
++QTG + E+ + + V + + +L + L +EP +
Sbjct: 122 -FKFEQTGLKFVIYDEEDRLYAEHIVGCIPHLSDQVRWLDQAALRASEPNVSHEAQGALE 180
Query: 227 FLPYDSQLDAM-LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
FL D Q++ L AY E A + +++ VT +L + V V+T
Sbjct: 181 FL-CDHQVNPFRLTDAYTEG-----ARQNGVDVYFNTNVTGVLHQGN--RVSGVKTDVAG 232
Query: 286 LYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAG 345
L+ ++ AAG W+ L L+ T I +IPVKP KG +L+ E L +
Sbjct: 233 LFRCTTLINAAGAWAAELS---LQATGI--EIPVKPVKGQILLTERMPKLLNGCLTTSDC 287
Query: 346 YVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKR 405
Y+ D +G+IL +GS+ + GF+ I+ + +
Sbjct: 288 YMAQKD---------NGEIL---------------IGSTTEDKGFDVTTTYPEINGLVQG 323
Query: 406 AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465
A P+L + L ++ GLRP PD P++GP+ G+ A GH G+ +
Sbjct: 324 AVRCVPELAHVNL------KRCWAGLRPGSPDELPILGPMDGVEGYLNACGHFRTGILTS 377
Query: 466 LGTAELVADMVLTNPLKVDSAPF 488
T L+ +V L +D PF
Sbjct: 378 AITGVLLDKLVNEEALPLDITPF 400
>sp|G3XD12|HCNC_PSEAE Hydrogen cyanide synthase subunit HcnC OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=hcnC PE=1 SV=1
Length = 417
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 178/446 (39%), Gaps = 87/446 (19%)
Query: 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPG---- 136
T+D++I G G+IG + A QL +L +AVVD P AT A G +W + + G
Sbjct: 4 TYDIVIAGGGVIGASCAYQLSRRGNLRIAVVDDKRP-GNATRASAGGLWAIGESVGLGCG 62
Query: 137 -------------------------------SEIWDLALRSNKLWKMLADSLRDQ-GLDP 164
+DLAL+SN L+ L L ++ G+D
Sbjct: 63 VIFFRMMSSRNRREAQGAAVAVDASTPHILPPAFFDLALQSNALYPELHRELIERHGMD- 121
Query: 165 LQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSR 224
+++TG + + E+ + V Q+ + +L +L +AEP +
Sbjct: 122 ---FKFERTGLKYVIQDDEDRQYAEHIVAQIPHLAEQVRWLDREELRRAEPAVSHAAHGA 178
Query: 225 AAFLPYDSQLDAM-LAVAYIEKGNRHFASKGRYAEFYHDP-VTCLLRSNSTGEVEAVQTS 282
FL D Q+ LA AY+E A++ E VT +LR + V+T
Sbjct: 179 LEFL-CDHQVSPFRLADAYLE------AARQNGVELLPGTNVTGVLRQGR--RISGVRTD 229
Query: 283 KNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASM 342
+ + ++ AAG W+ L E IPVKP KG +++ E L +
Sbjct: 230 NAGVLHCRTLINAAGAWAAE-----LSEMATGRRIPVKPVKGQIVLTERMPRLLNGCLTT 284
Query: 343 EAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRI 402
Y+ D +G+IL +GS+ + GF+ I +
Sbjct: 285 SDCYMAQKD---------NGEIL---------------IGSTTEDKGFDVSNTFPEIAGL 320
Query: 403 WKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGL 462
+ A P+L+ + L ++ GLRP PD P++GPV + A GH G+
Sbjct: 321 VQGAVRCVPELQQVNL------KRTWAGLRPGSPDELPILGPVAEVEGYLNACGHFRTGI 374
Query: 463 SLALGTAELVADMVLTNPLKVDSAPF 488
+ T L+ +V L +D APF
Sbjct: 375 LTSAITGVLLDRLVHEETLPLDIAPF 400
>sp|C5B9W5|DADA_EDWI9 D-amino acid dehydrogenase small subunit OS=Edwardsiella ictaluri
(strain 93-146) GN=dadA PE=3 SV=1
Length = 417
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 183/450 (40%), Gaps = 93/450 (20%)
Query: 84 VIIIGAGIIGLTIA--------------RQLLVGSDLSVAVVDKVVPCSGATGAGQG--- 126
V+I+G+G+IG+T A RQ G + S A ++ P A A G
Sbjct: 3 VVILGSGVIGVTSAWYLAQAGHQVTVVDRQEGPGLETSAANAGQISPGYAAPWAAPGIPL 62
Query: 127 --YIWMVHR-TPGSEIWDLALRSNK-LWKML------------------ADSLRD--QGL 162
W+ R P + D +L + LW+ML A+ RD L
Sbjct: 63 KALKWLFQRHAPLAMSLDGSLFQLRWLWQMLRNCDSTHYAQNKARMVRLAEYSRDCLAQL 122
Query: 163 DPLQVIGW--KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVG 220
I + +Q G+L + RTP++ + L EAG+ L ++ L EP L V
Sbjct: 123 RRTTTIDYEGRQLGTLQLFRTPQQYENAARDIAVLREAGVPYRLLPTAQLSTVEPALAVA 182
Query: 221 --EDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTG-EVE 277
S LP+D D L RH A + + + T +LR +G ++
Sbjct: 183 GVRLSGGLHLPHDETGDCQLF-------TRHLAQQAAQSGVHFIFSTQVLRLLRSGARIQ 235
Query: 278 AVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKL 337
VQ +TL + A VVA G +S L+ D ++ IPV P KG+ L L +
Sbjct: 236 GVQCGHDTLVAD-AYVVALGAYSTGLLQD-------IVAIPVYPLKGYSLTLPIDD---- 283
Query: 338 NHASMEAGYVGHHDLTLHPGQVNHGQILSISM-TATTDVIGNLVLGSSRQFAGFNTEVEQ 396
P +L S A T + +G + GF+ +
Sbjct: 284 ------------------PDAAPRSTVLDESYKVAITRFDRRIRVGGMAEVVGFDMSLPL 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP+ L A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRRTLERVVRDLYPRGGLLPQASFWS------GLRPATPDGTPLVGATP-LENLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV--LTNPLKVD 484
H LG ++A G+ +L+AD++ +T ++VD
Sbjct: 379 HGTLGWTMACGSGQLLADIISGVTPTIRVD 408
>sp|B2VJ51|DADA_ERWT9 D-amino acid dehydrogenase small subunit OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=dadA PE=3 SV=1
Length = 433
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 44/308 (14%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGED--SRAAFL 228
+Q G+L + RT ++ + + L EAG+ + L ++ L++AEP L + S L
Sbjct: 133 RQGGTLQLFRTAQQFESAAKDIAVLREAGVPYQLLEAAQLIEAEPALAASQHKLSGGLRL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + ++ + G + F + PV LL+ + ++ VQ + +
Sbjct: 193 PNDETGDCQL---FTQRLAEMAMAAGVHFRF-NTPVDALLQDAN--QICGVQCGSERV-T 245
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVG 348
A VVA G +S L++ +++ IPV P KG+ L + + +++
Sbjct: 246 ADAYVVALGSFSTELLNHIVK-------IPVYPLKGYSLTIPITDEKAAPLSTV------ 292
Query: 349 HHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAE 408
+ A T + +G + GFNT++ + +
Sbjct: 293 ---------------LDETYKVAITRFDNRIRVGGMAEIVGFNTQLLPARRKTLEMVVRD 337
Query: 409 FYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGT 468
YP D+ A F S GLRP PDG PV+G P L ++L TGH LG ++A G+
Sbjct: 338 LYPHGGDIGRATFWS------GLRPMTPDGTPVVGRTP-LKNLYLNTGHGTLGWTMACGS 390
Query: 469 AELVADMV 476
+L+AD++
Sbjct: 391 GQLLADII 398
>sp|P33642|Y4548_PSEAE Probable D-amino acid oxidase PA4548 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4548 PE=3 SV=3
Length = 364
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 276 VEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSL 335
V V TS+ + K +++AAG WSG L+ L L++PV P KG +++
Sbjct: 183 VVGVATSRGEIRGDK-VLLAAGAWSGELLKPL------GLELPVVPVKGQMIL------- 228
Query: 336 KLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVE 395
Y D +L+ A G++++GS+ + +GF+
Sbjct: 229 ----------YKCAADFLPR-------MVLAKGRYAIPRRDGHILIGSTLEHSGFDKTPT 271
Query: 396 QTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLAT 455
+ + AAE P+L D+ + GLRP P+G P IGPVPG ++L T
Sbjct: 272 DEAQESLRASAAELLPELADMQPVAHWA------GLRPGSPEGIPYIGPVPGFDGLWLNT 325
Query: 456 GHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAVQGR 493
GH GL LA + L+AD++ +D AP+A GR
Sbjct: 326 GHYRNGLVLAPASCRLLADLMSGREPIIDPAPYAPAGR 363
>sp|B7VMK8|DADA_VIBSL D-amino acid dehydrogenase small subunit OS=Vibrio splendidus
(strain LGP32) GN=dadA PE=3 SV=1
Length = 417
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 133/312 (42%), Gaps = 51/312 (16%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R+ ++L +++ +K L E+G+ L E L +D +L
Sbjct: 133 RQKGTLQVFRSEKQLDAIQQDMKLLTESGIEHSLFDVDQCLSVESGLADVKDKLVGGLYL 192
Query: 229 PYDSQLDA-MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLY 287
P+D D + EK +K F D L + +E + T++ +
Sbjct: 193 PHDETGDCHQFCLTLTEK------AKQLGVRFVFDTEVVSLNHQNRA-IETITTTQGE-F 244
Query: 288 SKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYV 347
A VVA+G +S L+ ++ L IPV P KG+ L L N K
Sbjct: 245 KADAYVVASGSYSRELLK------QVDLSIPVYPVKGYSLTLPIVNVDK----------- 287
Query: 348 GHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNT---EVEQTIIDRIWK 404
P + ++MT D I + + + AGF+ E + ID + K
Sbjct: 288 -------SPTSTVMDETYKVAMTRFDDRIR---IAGTAELAGFDYLIPEKRKATIDMVIK 337
Query: 405 RAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSL 464
+ +P+ D A++ + GLRP PDG P+IG P + +F TGH LG ++
Sbjct: 338 ---DLFPQAGDFSKAEYWT------GLRPMTPDGTPIIGKTP-IKNLFTNTGHGTLGWTM 387
Query: 465 ALGTAELVADMV 476
A G+ +++A +V
Sbjct: 388 ACGSGKILASVV 399
>sp|B1M860|DADA_METRJ D-amino acid dehydrogenase small subunit OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=dadA PE=3 SV=1
Length = 419
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 110/439 (25%), Positives = 172/439 (39%), Gaps = 87/439 (19%)
Query: 84 VIIIGAGIIGLTIA--------------RQLLVGSDLSVAVVDKVVPCSGATGAGQG--- 126
V+I+G G++G+T A RQ G + S A +V P A A G
Sbjct: 3 VLILGGGVVGVTSAYYLARAGHQVTVLERQPGAGLETSFANAGQVSPGYSAPWAAPGIPV 62
Query: 127 ----YIWMVHR--------TPGSEIW---------DLALRSNK-----LWKMLADSLRDQ 160
++ M HR P W + A R NK L + D+LRD
Sbjct: 63 KALRWLMMRHRPLVLWPRLEPRLYAWLTRMLANCTEEAYRRNKGRMVRLAEYSRDALRDL 122
Query: 161 GLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVG 220
+ ++ G+L + RT ++L + + + L G+ L + + AEP L
Sbjct: 123 RTETGIAYDHREKGTLQLFRTRKQLDHVGDDTRVLDAYGVPYTVLDPAGCIAAEPALAAV 182
Query: 221 EDSRAA--FLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGE-VE 277
D LP D DA L + RY T + R + G+ V
Sbjct: 183 RDVFVGGLRLPGDETGDAHLFTQRLAALCESLGVTFRYG-------TAIARLHHAGDRVT 235
Query: 278 AVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKL 337
AV+T+ L A V A G ++ +L+ L + +PV P KG+ SL L
Sbjct: 236 AVETADGALLRADAYVAALGSYTPALLRPL------GIALPVYPVKGY--------SLTL 281
Query: 338 NHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQT 397
EA P + +++T D I +G + + AGF+ +
Sbjct: 282 PITDAEAA----------PVSTVMDETYKVAITRLGDRI---RVGGTAELAGFSNALRGP 328
Query: 398 IIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGH 457
+ + + + +P DL A F + GLRP PDG P++G + +F TGH
Sbjct: 329 RRETLARSVQDLFPAGGDLDKASFWT------GLRPMTPDGTPIVGGTR-VGNLFTNTGH 381
Query: 458 EGLGLSLALGTAELVADMV 476
LG ++A G+ L+AD+V
Sbjct: 382 GTLGWTMACGSGRLLADLV 400
>sp|Q39IE1|DADA_BURS3 D-amino acid dehydrogenase small subunit OS=Burkholderia sp.
(strain 383) GN=dadA PE=3 SV=1
Length = 428
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS +DL +AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPADLKKAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S S + +L++ IPV P KG+ + + +N A+ V
Sbjct: 249 YVVALGSYSTSFISNLMK-------IPVYPLKGY-----SITAPIVNEAAAPVSTVLDET 296
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
+ A T + +G + GF+ ++ + + + +P
Sbjct: 297 YKI----------------AITRFDQRIRVGGMAEIVGFDKKLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|A4WBF2|DADA_ENT38 D-amino acid dehydrogenase small subunit OS=Enterobacter sp.
(strain 638) GN=dadA PE=3 SV=1
Length = 432
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 54/313 (17%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL--MVGEDSRAAFL 228
+Q G+L + RT ++ + L +AG+ + L +S L Q EP L + + + L
Sbjct: 133 RQGGTLQLFRTAQQYENATRDIAVLEDAGVPYQLLDASQLAQVEPALAEVAHKLTGGLRL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + K RY + PV LL + G++ V+ + +
Sbjct: 193 PNDETGDCQLFTQRLAKMCEQAGVTFRY----NTPVDKLL--SEGGKIYGVKCGDEVIKA 246
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVG 348
+ V+A G +S +++ LL DIPV P KG+ L +
Sbjct: 247 D-SYVMAFGSYSTAMLKGLL-------DIPVYPLKGYSLTI------------------- 279
Query: 349 HHDLTLHPGQVNHGQILSISMTAT-----TDVIGNLVLGSSRQFAGFNTEVEQTIIDRIW 403
P + ++G +S + T T + +G + GFNTE+ Q + +
Sbjct: 280 -------PVKEDNGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLE 332
Query: 404 KRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLS 463
+ +P+ FI GLRP PDG P++G P ++ TGH LG +
Sbjct: 333 MVVRDLFPR------GGFIEQATFWTGLRPMTPDGTPIVGRTP-FKNLWTNTGHGTLGWT 385
Query: 464 LALGTAELVADMV 476
+A G+ +L++D++
Sbjct: 386 MACGSGQLLSDLI 398
>sp|A8GFF7|DADA_SERP5 D-amino acid dehydrogenase small subunit OS=Serratia proteamaculans
(strain 568) GN=dadA PE=3 SV=1
Length = 434
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 131/308 (42%), Gaps = 44/308 (14%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL--MVGEDSRAAFL 228
+Q G+L + RT ++ + + L +AG+ + L +S L EP L + + + L
Sbjct: 133 RQGGTLQLFRTQQQFESAAKDIAVLEDAGVPYKLLEASQLASVEPALAQVAHKLTGGLQL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + K A + Y+ V LL ++ VQ ++
Sbjct: 193 PNDETGDCQLFTQQLAK----LAQQAGVTFLYNRSVDRLLVEGD--KISGVQCG-GEIFK 245
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVG 348
+ VVA G +S +L+ DL+ IPV P KG+ L +
Sbjct: 246 ADSYVVAFGSYSTALLRDLV-------SIPVYPLKGYSLTIP------------------ 280
Query: 349 HHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAE 408
D + P + I++T I +G + GFNT++EQ + + +
Sbjct: 281 ITDESAAPFSTVLDETYKIAITRFDQRI---RVGGMAEIVGFNTQLEQKRRETLEMVVRD 337
Query: 409 FYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGT 468
YP + A F + GLRP PDG P++G L +FL TGH LG ++A G+
Sbjct: 338 LYPNGGRVEDATFWT------GLRPMTPDGTPIVGKT-SLKNLFLNTGHGTLGWTMACGS 390
Query: 469 AELVADMV 476
+L++D++
Sbjct: 391 GQLLSDLI 398
>sp|C3LT39|DADA_VIBCM D-amino acid dehydrogenase small subunit OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=dadA PE=3 SV=1
Length = 421
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 136/313 (43%), Gaps = 48/313 (15%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R ++L +++ ++ L ++G+R E L+ + L EP L ++ +L
Sbjct: 134 RQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHEPGLAPVQEKLVGGLWL 193
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS--NSTGEVEAVQTSKNTL 286
P D D L + + +K + F+ D C ++ ++ VQT L
Sbjct: 194 PDDETGDCYLFCQQLTE-----LAKQQGVRFHFD---CHIQQLVCEGKKIIGVQTDLG-L 244
Query: 287 YSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGY 346
A VVA G +S SL+ L ++IPV P KG+ L L
Sbjct: 245 LKADAYVVALGSYSTSLLKPL------GIEIPVYPVKGYSLTLPII-------------- 284
Query: 347 VGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406
D P + +++T +D I + + + AGF+ + + I A
Sbjct: 285 ----DEKFAPQSTVMDETYKVALTRFSDRI---RVAGTAELAGFDPAIPEARKATIEMVA 337
Query: 407 AEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLAL 466
+ +P D F + G RP PDG P+IG P + ++ TGH LG ++A
Sbjct: 338 RDLFPHGGDFAKGQFWT------GFRPMTPDGTPIIGATP-YTNLYTNTGHGTLGWTMAC 390
Query: 467 GTAELVADMVLTN 479
G+A ++AD VLT+
Sbjct: 391 GSASILAD-VLTH 402
>sp|Q9KTV1|DADA_VIBCH D-amino acid dehydrogenase small subunit OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=dadA PE=3 SV=1
Length = 421
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 136/313 (43%), Gaps = 48/313 (15%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R ++L +++ ++ L ++G+R E L+ + L EP L ++ +L
Sbjct: 134 RQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHEPGLAPVQEKLVGGLWL 193
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS--NSTGEVEAVQTSKNTL 286
P D D L + + +K + F+ D C ++ ++ VQT L
Sbjct: 194 PDDETGDCYLFCQQLTE-----LAKQQGVRFHFD---CHIQQLVCEGKKIIGVQTDLG-L 244
Query: 287 YSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGY 346
A VVA G +S SL+ L ++IPV P KG+ L L
Sbjct: 245 LKADAYVVALGSYSTSLLKPL------GIEIPVYPVKGYSLTLPII-------------- 284
Query: 347 VGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406
D P + +++T +D I + + + AGF+ + + I A
Sbjct: 285 ----DEKFAPQSTVMDETYKVALTRFSDRI---RVAGTAELAGFDPAIPEARKATIEMVA 337
Query: 407 AEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLAL 466
+ +P D F + G RP PDG P+IG P + ++ TGH LG ++A
Sbjct: 338 RDLFPHGGDFAKGQFWT------GFRPMTPDGTPIIGATP-YTNLYTNTGHGTLGWTMAC 390
Query: 467 GTAELVADMVLTN 479
G+A ++AD VLT+
Sbjct: 391 GSASILAD-VLTH 402
>sp|B1JXT8|DADA_BURCC D-amino acid dehydrogenase small subunit OS=Burkholderia
cenocepacia (strain MC0-3) GN=dadA PE=3 SV=1
Length = 428
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L QAEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKQAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGNETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + + +L++ IPV P KG+ S+ A V D
Sbjct: 249 YVVALGSYSTNFISNLMK-------IPVYPLKGY---------------SITAPIV---D 283
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
P + I++T I +G + GF+ + + + + +P
Sbjct: 284 AAAAPVSTVLDETYKIAITRFDQRI---RVGGMAEIVGFDKTLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|B4EAP1|DADA_BURCJ D-amino acid dehydrogenase small subunit OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=dadA PE=3 SV=1
Length = 428
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L +AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKKAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S S + +L++ +PV P KG+ + + +N A+ V
Sbjct: 249 YVVALGSYSTSFISNLMK-------VPVYPLKGY-----SITAPIVNEAAAPVSTVLDET 296
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
+ A T + +G + GF+ ++ + + + +P
Sbjct: 297 YKI----------------AITRFDQRIRVGGMAEIVGFDKKLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|A5F3D0|DADA_VIBC3 D-amino acid dehydrogenase small subunit OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=dadA PE=3 SV=1
Length = 421
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 136/313 (43%), Gaps = 48/313 (15%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L + R ++L +++ ++ L ++G+R E L+ + L EP L ++ +L
Sbjct: 134 RQRGTLQVFRDEKQLTAIEKDMQLLAQSGVRFELLNVAQCLTHEPGLAPVQEKLVGGLWL 193
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS--NSTGEVEAVQTSKNTL 286
P D D L + + +K + F+ D C ++ ++ VQT L
Sbjct: 194 PDDETGDYYLFCQQLTE-----LAKQQGVRFHFD---CHIQQLVCEGKKIIGVQTDLGLL 245
Query: 287 YSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGY 346
A VVA G +S SL+ L ++IPV P KG+ L L
Sbjct: 246 -KADAYVVALGSYSTSLLKPL------GIEIPVYPVKGYSLTLPII-------------- 284
Query: 347 VGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406
D P + +++T +D I + + + AGF+ + + I A
Sbjct: 285 ----DEKFAPQSTVMDETYKVALTRFSDRI---RVAGTAELAGFDPAIPEARKATIEMVA 337
Query: 407 AEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLAL 466
+ +P D F + G RP PDG P+IG P + ++ TGH LG ++A
Sbjct: 338 RDLFPHGGDFAKGQFWT------GFRPMTPDGTPIIGATP-YTNLYTNTGHGTLGWTMAC 390
Query: 467 GTAELVADMVLTN 479
G+A ++AD VLT+
Sbjct: 391 GSASILAD-VLTH 402
>sp|B2JF25|DADA_BURP8 D-amino acid dehydrogenase small subunit OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=dadA PE=3 SV=1
Length = 428
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 128/305 (41%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E L +DL +AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLEEANVPYELLMPADLARAEPALAATSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + G + V+ N +
Sbjct: 196 ETGDCQLFTTRLAALAEQLGVKFRY----NTPIDAL--AMEGGRIAGVKCG-NEMVRADN 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + L++ IPV P KG+ S+ A V D
Sbjct: 249 FVVALGSYSTQFLSGLVK-------IPVYPLKGY---------------SITAPIV---D 283
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
P + I++T D I +G + GF+ +++Q + + + +P
Sbjct: 284 AKSAPVSTVLDETYKIAITRFDDRI---RVGGMAEIVGFDKKLKQARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|A9MP60|DADA_SALAR D-amino acid dehydrogenase small subunit OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dadA PE=3
SV=1
Length = 432
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/441 (24%), Positives = 180/441 (40%), Gaps = 93/441 (21%)
Query: 84 VIIIGAGIIGLTIARQL-LVGSDLSVAVVDKVV-PCSGATGAGQGYI-------WMVHRT 134
V+I+G+G++G+T A L G D V V+D+ P G + A G I W
Sbjct: 3 VVILGSGVVGVTSAWYLSQAGHD--VTVIDRESGPAQGTSAANAGQISPGYAAPWAAPGV 60
Query: 135 PGSEI-W------DLALRSNK-------LWKMLAD--------------SLRDQGLDPLQ 166
P I W LA+R + +W+ML + L + D L+
Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTPFQLKWMWQMLRNCDTRHYMENKGRMVRLAEYSRDCLK 120
Query: 167 VI--------GWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G+L + RT + + L +AG+ + L SS L + EP L
Sbjct: 121 TLRAETGIKYEGRQGGTLQLFRTARQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + H A + ++ PV LL N ++
Sbjct: 181 EVAHKLTGGLRLPNDETGDCQLFTQRLA----HMAEQAGVTFRFNTPVEKLLYENE--QI 234
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
V+ + + + A V+A G +S +++ ++DIPV P KG+ L +
Sbjct: 235 YGVKCA-DEIIKADAYVMAFGSYSTAMLKG-------IVDIPVYPLKGYSLTIP------ 280
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMT-ATTDVIGNLVLGSSRQFAGFNTEVE 395
+ P IL + A T + +G + GFNT+++
Sbjct: 281 ----------------IVEPDGAPVSTILDETYKIAITRFDKRIRVGGMAEIVGFNTDLQ 324
Query: 396 QTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLAT 455
Q + + + +P+ + A F + GLRP PDG PV+G ++L T
Sbjct: 325 QPRRETLEMVVRDLFPRGGRIEQATFWT------GLRPMTPDGTPVVGRT-RFKNLWLNT 377
Query: 456 GHEGLGLSLALGTAELVADMV 476
GH LG ++A G+ +L++D++
Sbjct: 378 GHGTLGWTMACGSGQLLSDIL 398
>sp|B4SIE4|DADA_STRM5 D-amino acid dehydrogenase small subunit OS=Stenotrophomonas
maltophilia (strain R551-3) GN=dadA PE=3 SV=1
Length = 434
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 132/311 (42%), Gaps = 50/311 (16%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL-----MVGEDSRA 225
+ G+ + RT ++L + ++ L + G+ E L + ++QAEP L +VG A
Sbjct: 133 RDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVG----A 188
Query: 226 AFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
LP D D L + + + G F D +T L+ S GE T
Sbjct: 189 LRLPRDQTGDCQL---FTRRLAQMCVDAGVEFRFDQD-ITGLV---SDGERITGVHVNGT 241
Query: 286 LYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAG 345
L + VVA G +S +L+ L + +PV P KG+ L L
Sbjct: 242 LETADRFVVALGSYSPALVAPL------GMRLPVYPLKGYSLTLPI-------------- 281
Query: 346 YVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKR 405
D + P + +++T D I +G + AGF+ + Q + +
Sbjct: 282 ----TDPAMAPTSTILDESYKVAVTRFDDRI---RVGGMAEVAGFDLSLSQRRRETLELV 334
Query: 406 AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465
++ YPK DL A F + GLRP PDG PVIG P ++L TGH LG ++A
Sbjct: 335 VSDLYPKGGDLSRAQFWT------GLRPATPDGTPVIGATP-FRNLYLNTGHGTLGWTMA 387
Query: 466 LGTAELVADMV 476
G+ +AD++
Sbjct: 388 CGSGRYLADLM 398
>sp|B1YV52|DADA_BURA4 D-amino acid dehydrogenase small subunit OS=Burkholderia ambifaria
(strain MC40-6) GN=dadA PE=3 SV=1
Length = 428
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 128/305 (41%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKNAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G + VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGRIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S S + +L++ IPV P KG+ + + +N A+ V
Sbjct: 249 YVVALGSYSTSFISNLMK-------IPVYPLKGY-----SITAPIVNDAAAPVSTVLDET 296
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
+ A T + +G + GF+ + + + + +P
Sbjct: 297 YKI----------------AITRFDQRIRVGGMAEIVGFDKNLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|Q0BH74|DADA_BURCM D-amino acid dehydrogenase small subunit OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=dadA PE=3 SV=1
Length = 428
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 128/305 (41%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKNAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G + VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDSL--AIAGGRIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S S + +L++ IPV P KG+ + + +N A+ V
Sbjct: 249 YVVALGSYSTSFISNLMK-------IPVYPLKGY-----SITAPIVNDAAAPVSTVLDET 296
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
+ A T + +G + GF+ + + + + +P
Sbjct: 297 YKI----------------AITRFDQRIRVGGMAEIVGFDKNLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|A7IHQ4|DADA_XANP2 D-amino acid dehydrogenase small subunit OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=dadA PE=3
SV=1
Length = 421
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 175/455 (38%), Gaps = 91/455 (20%)
Query: 84 VIIIGAGIIGLTIA--------------RQLLVGSDLSVAVVDKVVPCSGATGAGQG--- 126
++I+G+G++G A RQ G + S A +V P A AG G
Sbjct: 3 ILILGSGVVGTASAYYLAKAGHEVTVLDRQRAAGMETSFANAGQVSPGYSAPWAGPGIPV 62
Query: 127 ----YIWMVHR--------TPGSEIW---------DLALRSNKLWKM-LADSLRDQGLDP 164
++ M HR P +W + A R NK + LA+ RD LD
Sbjct: 63 KAIKWLLMHHRPLVVWPSLDPKLYLWLAKMLANCTEEAYRRNKARMVALAEYSRD-ALDA 121
Query: 165 LQ-----VIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMV 219
L+ + G+L + RT ++L + + L +R E L S ++AEP L
Sbjct: 122 LRSETGIAYDERMLGTLQLFRTRKQLDHVHSDTEVLDAHNVRYELLDPSGCIRAEPALAR 181
Query: 220 GEDSRAA--FLPYDSQLDAMLAVAYIEKGNRHFASK-GRYAEFYHDPVTCLLRSNSTGEV 276
D LP D DA + R+ A R + VT + G +
Sbjct: 182 VRDKFVGGLRLPGDETGDAHIF-------TRNLADICARQGVTFRYGVTVEGLRHEAGRI 234
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
V + + + V A G ++ +L+ L + +PV P KG+ L L +
Sbjct: 235 TGVALAGGEIATADIYVAAMGSYTPALLAPL------GIRLPVYPVKGYSLTLPITD--- 285
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLV-LGSSRQFAGFNTEVE 395
P ++ + +G + +G + + AGF+ +
Sbjct: 286 -------------------PDAAPRSTVMDETYKVAITRLGERIRVGGTAELAGFDLSLR 326
Query: 396 QTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLAT 455
+ + + +P D+ A F + GLRP PDG P+IGP L +F T
Sbjct: 327 EPRRATLAHSVGDLFPAGGDISKATFWT------GLRPMTPDGTPIIGPTK-LDNLFTNT 379
Query: 456 GHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAV 490
GH LG ++A G+ ++AD++ +D+A +V
Sbjct: 380 GHGTLGWTMACGSGRVLADLIGGRAPDIDTADLSV 414
>sp|A0K5P0|DADA_BURCH D-amino acid dehydrogenase small subunit OS=Burkholderia
cenocepacia (strain HI2424) GN=dadA PE=3 SV=1
Length = 428
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKHAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + + +L++ IPV P KG+ S+ A V D
Sbjct: 249 YVVALGSYSTNFISNLMK-------IPVYPLKGY---------------SITAPIV---D 283
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
P + I++T I +G + GF+ + + + + +P
Sbjct: 284 AAAAPVSTVLDETYKIAITRFDQRI---RVGGMAEIVGFDKTLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|Q1BY09|DADA_BURCA D-amino acid dehydrogenase small subunit OS=Burkholderia
cenocepacia (strain AU 1054) GN=dadA PE=3 SV=1
Length = 428
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLQEANVPFELLSPAELKHAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + + +L++ IPV P KG+ S+ A V D
Sbjct: 249 YVVALGSYSTNFISNLMK-------IPVYPLKGY---------------SITAPIV---D 283
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
P + I++T I +G + GF+ + + + + +P
Sbjct: 284 AAAAPVSTVLDETYKIAITRFDQRI---RVGGMAEIVGFDKTLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|B8IJ86|DADA_METNO D-amino acid dehydrogenase small subunit OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=dadA PE=3 SV=1
Length = 421
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 134/337 (39%), Gaps = 48/337 (14%)
Query: 145 RSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEY 204
R +L + D+LR+ + ++ G+L + RT ++L + E L E G+ E
Sbjct: 107 RMVRLAEFSRDALRELRAETGIAYDHREKGTLQLFRTRKQLDHVGEDTSVLDEYGVAYEV 166
Query: 205 LSSSDLLQAEPELMVGEDSRAAF-----LPYDSQLDAMLAVAYIEKGNRHFASKGRYAEF 259
L + AEP L R F LP D DA L R A R
Sbjct: 167 LDEGGCIAAEPALA---RVRGGFVGGLRLPGDETGDAHLFT------QRLAAICARRGVS 217
Query: 260 YHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPV 319
+ VT + G + V+T + + A V A G ++ +L+ L L +PV
Sbjct: 218 FRYGVTVARLRHEAGRITGVETGTGEVLTADAYVAAMGSYTPALLRPL------GLALPV 271
Query: 320 KPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNL 379
P KG+ L L D + P + +++T D I
Sbjct: 272 YPVKGYSLTLPV------------------TDESAAPVSTVMDETFKVAITRLGDRI--- 310
Query: 380 VLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGK 439
+G + + AGF+ + + + + +P D A F + GLRP PDG
Sbjct: 311 RVGGTAELAGFSGTLRGPRRATLERSLRDLFPAGGDARQAQFWT------GLRPMTPDGT 364
Query: 440 PVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
P++GP ++ TGH LG ++A G+ L+AD++
Sbjct: 365 PIVGPTV-YDNLYTNTGHGTLGWTMACGSGRLLADLI 400
>sp|Q2SY06|DADA_BURTA D-amino acid dehydrogenase small subunit OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=dadA PE=3 SV=1
Length = 428
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 154/358 (43%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETDIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R+ + + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFRF----NTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGAFS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ +L++ IPV P KG+ S+ A V D P
Sbjct: 258 TNLVANLVK-------IPVYPLKGY---------------SITAPIV---DAAKAPVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T + I +G + GF+ + Q D + + +P D A
Sbjct: 293 LDETYKIAITRFDERI---RVGGMAEIVGFDKRLRQARRDTLEMCVNDLFPGGGDTANAS 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A1JQN9|DADA_YERE8 D-amino acid dehydrogenase small subunit OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=dadA PE=3
SV=1
Length = 434
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 44/308 (14%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL--MVGEDSRAAFL 228
+Q G+L + RT ++ + + L +AG+ L++ L EP L + + + L
Sbjct: 133 RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTADQLATVEPALAKVAHKLTGGLRL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + K A + ++ V LL G+ A + +
Sbjct: 193 PNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVEKLLVD---GDQIAGVLWGDDIIK 245
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVG 348
A VVA G +S +L+ L+ IPV P KG+ L + N ++++
Sbjct: 246 ADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPITNPAGAPYSTV------ 292
Query: 349 HHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAE 408
+ I++T D I +G + GFNT++EQ + + +
Sbjct: 293 ------------LDETYKIAITRFDDRI---RVGGMAEIVGFNTQLEQARRETLEMVVGD 337
Query: 409 FYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGT 468
YP ++ A F + GLRP PDG P++G L ++L TGH LG ++A G+
Sbjct: 338 LYPDGGNISQATFWT------GLRPMTPDGTPIVGRT-SLKNLYLNTGHGTLGWTMACGS 390
Query: 469 AELVADMV 476
+L+AD++
Sbjct: 391 GQLLADIM 398
>sp|B1JLH4|DADA_YERPY D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=dadA
PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|Q66AQ6|DADA_YERPS D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=dadA
PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|Q1CJ86|DADA_YERPN D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=dadA PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|A9R9D3|DADA_YERPG D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=dadA PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|Q8ZEL7|DADA_YERPE D-amino acid dehydrogenase small subunit OS=Yersinia pestis GN=dadA
PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|B2K3Q3|DADA_YERPB D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=dadA
PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|Q1C7V0|DADA_YERPA D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=dadA PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|A7FI92|DADA_YERP3 D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=dadA PE=3 SV=1
Length = 434
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 175/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L ++L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLYLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|A9ADT7|DADA_BURM1 D-amino acid dehydrogenase small subunit OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=dadA PE=3 SV=1
Length = 428
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + RT ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRTQQQLDGAAKDIAVLREANVPFELLSPAELKNAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDGL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + + +L++ IPV P KG+ S+ A V D
Sbjct: 249 YVVALGSYSTNFVANLMK-------IPVYPLKGY---------------SITAPIV---D 283
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
P + I++T I +G + GF+ + + + + +P
Sbjct: 284 EAAAPVSTVLDETYKIAITRFDQRI---RVGGMAEIVGFDKTLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +FL TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFLNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|Q88BB6|DADA_PSESM D-amino acid dehydrogenase small subunit OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=dadA PE=3 SV=1
Length = 433
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/451 (23%), Positives = 172/451 (38%), Gaps = 92/451 (20%)
Query: 84 VIIIGAGIIGLTIA--------------RQLLVGSDLSVAVVDKVVPCSGATGAGQG--- 126
V+++G+G+IG T A RQ VG + S A +V P + A G
Sbjct: 3 VLVLGSGVIGTTSAYYLARAGFQVTVVDRQPAVGMETSFANAGQVSPGYASPWAAPGVPL 62
Query: 127 -----------------------YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGLD 163
Y+WM A+ ++ + L++ RD LD
Sbjct: 63 KAIKWLLQRHSPLAIKATADIDQYLWMAQMLRNCTANRYAVNKERMVR-LSEYSRD-CLD 120
Query: 164 PLQV---IGW--KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
L++ I + + G+ + RT +L + + L ++G+ E L + + + EP L
Sbjct: 121 ELRIETGIAYEGRSLGTTQLFRTQAQLDNAAKDIAVLEQSGVPYELLDRAGIARVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ G S A LP D D L + + + RY + + R G+
Sbjct: 181 GVTGILSGALRLPNDQTGDCQLFTTRLAQMAVELGVEFRYGQ-------NIERLEHAGDT 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
+ L + V+A G +S L+ L + PV P KG+ L + N
Sbjct: 234 VSGVWIDGVLETADRYVLALGSYSPQLLKPL------GIKAPVYPLKGYSLTVPISN--- 284
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISM-TATTDVIGNLVLGSSRQFAGFNTEVE 395
P IL + A T + +G + AGF+ +
Sbjct: 285 -------------------PAMAPTSTILDETYKVAITRFDNRIRVGGMAEIAGFDLSLN 325
Query: 396 QTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLAT 455
+ + + YP+ DL A F + GLRP PDG P++G P L +FL T
Sbjct: 326 PRRRETLEMIVGDLYPQGGDLSQASFWT------GLRPTTPDGTPIVGATP-LRNLFLNT 378
Query: 456 GHEGLGLSLALGTAELVADMVLTNPLKVDSA 486
GH LG ++A G+ L+AD++ ++ +A
Sbjct: 379 GHGTLGWTMACGSGRLLADLIARKRPQISAA 409
>sp|A4JCJ3|DADA_BURVG D-amino acid dehydrogenase small subunit OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=dadA PE=3 SV=1
Length = 428
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 44/305 (14%)
Query: 174 GSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYD 231
G+L + R+ ++L + + L EA + E LS ++L AEP L LP D
Sbjct: 136 GTLQLFRSQQQLDGAAKDIAVLREANVPFELLSPAELKNAEPALAAVSHKLTGGLRLPGD 195
Query: 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKA 291
D L + K RY + P+ L + + G++ VQ T+ + A
Sbjct: 196 ETGDCQLFTTRLAALAESLGVKFRY----NTPIDAL--AIAGGKIAGVQCGSETVRAD-A 248
Query: 292 IVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351
VVA G +S + + L++ IPV P KG+ + + +N A+ V
Sbjct: 249 YVVALGSYSTNFVSKLMK-------IPVYPLKGY-----SITAPIVNEAAAPVSTVLDET 296
Query: 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYP 411
+ A T + +G + GF+ ++ + + + +P
Sbjct: 297 YKI----------------AITRFDQRIRVGGMAEIVGFDKKLRAARRETLEMCVNDLFP 340
Query: 412 KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471
D A F + GLRP PDG P++G P +S +F+ TGH LG +++ G+ +L
Sbjct: 341 GGGDTSKATFWT------GLRPMTPDGTPIVGRTP-VSNLFMNTGHGTLGWTMSCGSGQL 393
Query: 472 VADMV 476
+AD++
Sbjct: 394 LADLI 398
>sp|Q98F08|DADA1_RHILO D-amino acid dehydrogenase 1 small subunit OS=Rhizobium loti
(strain MAFF303099) GN=dadA1 PE=3 SV=1
Length = 418
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 139/326 (42%), Gaps = 49/326 (15%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAF--- 227
+ G+L + RT ++L V+ L + G+ E L + AEP L R F
Sbjct: 133 RTQGTLQLFRTQKQLDGTGGDVEVLKKYGVSYEILDQDGCIAAEPAL---GGVREKFVGG 189
Query: 228 --LPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
LP+D D + + EK ++G E Y + +LRS + V + TSK
Sbjct: 190 LRLPHDETGDCKM---FTEKLAELCVARGVKFE-YDTTIWRVLRSRN--RVANLSTSKG- 242
Query: 286 LYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAG 345
+ +A V+A G +S M + R IPV P KG+ +
Sbjct: 243 FKASEAYVMALGSYSAGFMRRMKR------SIPVYPVKGYSIT----------------- 279
Query: 346 YVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKR 405
V D + P + +++T D I +G + + +GF+ + ++ +
Sbjct: 280 -VPIKDADVAPVSTVMDETYKVAITRLGDRI---RVGGTAEISGFDLRLHESRRRTLEHS 335
Query: 406 AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465
+ +P + A F GLRP PDG P+IG LS +FL TGH LG ++A
Sbjct: 336 VGDLFPGAGAMREATFWC------GLRPMTPDGPPLIGRTE-LSNLFLNTGHGTLGWTMA 388
Query: 466 LGTAELVADMVLTNPLKVDSAPFAVQ 491
G+A+++AD++ ++D+ A +
Sbjct: 389 CGSAKVLADIMSNKVPEIDARALAQE 414
>sp|A3NC12|DADA_BURP6 D-amino acid dehydrogenase small subunit OS=Burkholderia
pseudomallei (strain 668) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A1V6K0|DADA_BURMS D-amino acid dehydrogenase small subunit OS=Burkholderia mallei
(strain SAVP1) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|Q62M46|DADA_BURMA D-amino acid dehydrogenase small subunit OS=Burkholderia mallei
(strain ATCC 23344) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A2S4P8|DADA_BURM9 D-amino acid dehydrogenase small subunit OS=Burkholderia mallei
(strain NCTC 10229) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A3MHR1|DADA_BURM7 D-amino acid dehydrogenase small subunit OS=Burkholderia mallei
(strain NCTC 10247) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|Q7MND7|DADA_VIBVY D-amino acid dehydrogenase small subunit OS=Vibrio vulnificus
(strain YJ016) GN=dadA PE=3 SV=2
Length = 417
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 133/309 (43%), Gaps = 45/309 (14%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FL 228
+Q G+L I RT ++L+ +++ + L ++G R + +S + ++ EP L +L
Sbjct: 133 RQQGTLQIFRTQKQLIAIEKDIALLEQSGTRYQRMSVDECIKQEPGLAAVSHKLTGGLYL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTG-EVEAVQTSKNTLY 287
P D D L + ++ +G F T + + N+ G +V +V T L
Sbjct: 193 PDDETGDCYL---FCQQMTELAQQQGVTFLFN----TNVKKVNAQGNQVVSVSTDAGELQ 245
Query: 288 SKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYV 347
+ VVA G +S +L+ ++ + IPV P KG+ L V
Sbjct: 246 A-DVYVVAMGSYSTALL------AQLGITIPVYPVKGYSLT------------------V 280
Query: 348 GHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAA 407
D + P + +++T D I + + + AGF+ + + I
Sbjct: 281 PITDESQAPVSTVMDETYKVALTRFDDRIR---VAGTAELAGFDPAIPEKRKATISMVVN 337
Query: 408 EFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALG 467
+ +P D A+F + G RP PDG P+IG P L ++ TGH LG ++A G
Sbjct: 338 DLFPHSGDFAKAEFWT------GFRPMTPDGTPLIGKTP-LKNLYTNTGHGTLGWTMACG 390
Query: 468 TAELVADMV 476
+ L++ ++
Sbjct: 391 SGHLLSQII 399
>sp|Q3JQ00|DADA_BURP1 D-amino acid dehydrogenase small subunit OS=Burkholderia
pseudomallei (strain 1710b) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A3NXU9|DADA_BURP0 D-amino acid dehydrogenase small subunit OS=Burkholderia
pseudomallei (strain 1106a) GN=dadA PE=3 SV=1
Length = 428
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 150/358 (41%), Gaps = 55/358 (15%)
Query: 127 YIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD--QGLDPLQVIGW--KQTGSLLIGRTP 182
++W + R +E + AL ++ + LA+ RD Q L I + + G+L + RT
Sbjct: 88 WMWQMLRNCTTERY--ALNKGRMVR-LAEYSRDCLQALRAETAIQYEGRTGGTLQVFRTQ 144
Query: 183 EELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAA--FLPYDSQLDAMLAV 240
++L + + L EA + E LSS +L +AEP L LP D D L
Sbjct: 145 QQLDGAAKDIAVLREANVPFELLSSDELKKAEPALAAVSHKLTGGLRLPGDETGDCQLFT 204
Query: 241 AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300
+ K R ++ + L + + G++ VQ + A VVA G +S
Sbjct: 205 TRLAALAEQLGVKFR----FNTRIDAL--AVAGGKIAGVQCG-GEMVRADAYVVALGSYS 257
Query: 301 GSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVN 360
+L+ L++ IPV P KG+ + ++ K P
Sbjct: 258 TNLVASLVK-------IPVYPLKGYSITAPIVDAAK------------------APVSTV 292
Query: 361 HGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLAD 420
+ I++T D I +G + GF+ + + + +P D A
Sbjct: 293 LDETYKIAITRFDDRI---RVGGMAEIVGFDKRLRDARRGTLEMCVNDLFPGGGDTAKAT 349
Query: 421 FISNRKVRIGLRPYMPDGKPVIG--PVPGLSKVFLATGHEGLGLSLALGTAELVADMV 476
F + GLRP PDG P++G PVP L FL TGH LG +++ G+ +L+AD++
Sbjct: 350 FWT------GLRPMTPDGTPIVGRTPVPNL---FLNTGHGTLGWTMSCGSGQLLADLM 398
>sp|A3PRF6|DADA_RHOS1 D-amino acid dehydrogenase small subunit OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=dadA PE=3 SV=1
Length = 436
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 140/321 (43%), Gaps = 39/321 (12%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPY 230
+Q G+L + R+ ++L ++ L G+ E L + L AEP L D A L
Sbjct: 133 RQQGTLQLFRSQKQLDAAARDIEVLRAGGVPFELLDADGCLAAEPGLRAARDRIAGGLRL 192
Query: 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKK 290
D +G A +G F + LR G V V+T+K T +
Sbjct: 193 TG--DETGDCFKFTQGLAGLAEEG-GVRFRYGTGVERLRVEG-GRVTGVETTKGTFLAD- 247
Query: 291 AIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHH 350
A+VVA G +S +L+ L L +PV P KG+ + + ++ + +++
Sbjct: 248 AVVVALGSYSPALVAPL------GLRLPVYPVKGYSITVPIVDAERAPVSTV-------- 293
Query: 351 DLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFY 410
++ ++I+ T +G + + AGF+ + + + + +
Sbjct: 294 --------MDETYKIAITRLGTRIRVGGMA-----EVAGFSATLPPARRETLAMSVNDLF 340
Query: 411 PKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAE 470
DL A F + GLRP PDG PV+G P ++ ++L TGH LG ++A G+A
Sbjct: 341 GGAGDLSRASFWT------GLRPMTPDGTPVVGRTP-VAGLWLNTGHGTLGWTMAAGSAR 393
Query: 471 LVADMVLTNPLKVDSAPFAVQ 491
+++D++ +++SA ++
Sbjct: 394 VLSDLIDGRAPEIESADLGIE 414
>sp|B7LSJ5|DADA_ESCF3 D-amino acid dehydrogenase small subunit OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=dadA
PE=3 SV=1
Length = 432
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 44/308 (14%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL--MVGEDSRAAFL 228
+Q G+L + RT ++ + L +AG+ + L S+ L + EP L + + + L
Sbjct: 133 RQGGTLQLFRTEQQFENATRDIAVLEDAGVPYQLLESNRLAEVEPALAAVAHKLTGGLRL 192
Query: 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYS 288
P D D L + + K R+ + PV LL ++ V+ +
Sbjct: 193 PNDETGDCQLFTQRLAQMAEQAGVKFRF----NTPVDKLLFEGE--QIYGVKCGDEVI-K 245
Query: 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVG 348
A V+A G +S +++ ++DIPV P KG+ L + N E G
Sbjct: 246 ADAYVMAFGSYSTAMLKG-------IVDIPVYPLKGYSLTIPVAN---------EDG--- 286
Query: 349 HHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAE 408
P + I++T + I +G + GFNTE+ Q + + +
Sbjct: 287 ------APVSTILDETYKIAITRFDNRI---RVGGMAEIVGFNTELLQPRRETLEMVVRD 337
Query: 409 FYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGT 468
YP+ + A F + GLRP PDG PV+G ++L TGH LG ++A G+
Sbjct: 338 LYPRGGHIEQATFWT------GLRPMTPDGTPVVGRT-SFKNLWLNTGHGTLGWTMACGS 390
Query: 469 AELVADMV 476
+L++D++
Sbjct: 391 GQLLSDIL 398
>sp|A4TJC4|DADA_YERPP D-amino acid dehydrogenase small subunit OS=Yersinia pestis (strain
Pestoides F) GN=dadA PE=3 SV=1
Length = 434
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 110/440 (25%), Positives = 174/440 (39%), Gaps = 91/440 (20%)
Query: 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQ------GYI--WMVHRTP 135
V+I+G+G++G+T A L V V+D+ + T AG GY W P
Sbjct: 3 VVILGSGVVGVTSA-WYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 136 GSEI-W------DLALRSNK-------LWKMLA----------------------DSLRD 159
I W LA+R + +W+ML D L+D
Sbjct: 62 LKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLKD 121
Query: 160 -QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL- 217
+ +Q G +Q G+L + RT ++ + + L +AG+ L++ L EP L
Sbjct: 122 LRAATGIQYEG-RQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180
Query: 218 -MVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEV 276
+ + + LP D D L + K A + ++ V LL G+
Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAK----MAEQAGVKFIFNRSVDKLL---VEGDQ 233
Query: 277 EAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLK 336
A + + A VVA G +S +L+ L+ IPV P KG+ L +
Sbjct: 234 IAGVLCGDDIIKADAYVVAFGAYSTALLAGLV-------SIPVYPLKGYSLTIPI----- 281
Query: 337 LNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQ 396
D P + I++T D I +G + GFNT++
Sbjct: 282 -------------TDPASAPFSTVLDETYKIAITRFDDRI---RVGGMAEIVGFNTQLAP 325
Query: 397 TIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATG 456
+ + + YP D+ A F S GLRP PDG P++G P L + L TG
Sbjct: 326 ARRETLEMVVRDLYPHGGDISQAVFWS------GLRPMTPDGTPIVGRTP-LKNLNLNTG 378
Query: 457 HEGLGLSLALGTAELVADMV 476
H LG ++A G+ +L+AD++
Sbjct: 379 HGTLGWTMACGSGQLLADII 398
>sp|B2FLQ1|DADA_STRMK D-amino acid dehydrogenase small subunit OS=Stenotrophomonas
maltophilia (strain K279a) GN=dadA PE=3 SV=1
Length = 434
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 130/311 (41%), Gaps = 50/311 (16%)
Query: 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPEL-----MVGEDSRA 225
+ G+ + RT ++L + ++ L + G+ E L + ++QAEP L +VG A
Sbjct: 133 RDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVG----A 188
Query: 226 AFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285
LP D D L + + + G EF D L + + V+
Sbjct: 189 LRLPRDQTGDCQL---FTRRLAQMCVDAG--VEFRFDQDITGLEFDGD-RITGVRID-GK 241
Query: 286 LYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAG 345
L + VVA G +S +L+ L + +PV P KG+ L L
Sbjct: 242 LETADRFVVALGSYSPALVAPL------GMRLPVYPLKGYSLTLP--------------- 280
Query: 346 YVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKR 405
D + P + +++T D I +G + AGF+ + Q + +
Sbjct: 281 ---ITDPAMAPTSTILDESYKVAVTRFDDRI---RVGGMAEVAGFDLSLSQRRRETLELV 334
Query: 406 AAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465
++ YPK DL A F + GLRP PDG PVIG P ++L TGH LG ++A
Sbjct: 335 VSDLYPKGGDLSRAQFWT------GLRPATPDGTPVIGATP-FRNLYLNTGHGTLGWTMA 387
Query: 466 LGTAELVADMV 476
G+ +AD++
Sbjct: 388 CGSGRYLADLM 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,909,606
Number of Sequences: 539616
Number of extensions: 7700224
Number of successful extensions: 22640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 22009
Number of HSP's gapped (non-prelim): 692
length of query: 495
length of database: 191,569,459
effective HSP length: 122
effective length of query: 373
effective length of database: 125,736,307
effective search space: 46899642511
effective search space used: 46899642511
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)