Query 011027
Match_columns 495
No_of_seqs 249 out of 2815
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01747 mnmC bifunctional tRN 100.0 3.1E-59 6.8E-64 498.6 32.6 414 16-494 199-651 (662)
2 PRK00711 D-amino acid dehydrog 100.0 1E-47 2.2E-52 391.3 37.8 362 83-493 2-416 (416)
3 TIGR01373 soxB sarcosine oxida 100.0 9.3E-47 2E-51 382.7 40.4 364 81-494 30-400 (407)
4 PRK11259 solA N-methyltryptoph 100.0 7.6E-44 1.6E-48 358.0 38.7 363 81-494 3-375 (376)
5 TIGR03329 Phn_aa_oxid putative 100.0 8.3E-44 1.8E-48 365.1 37.7 364 75-483 18-398 (460)
6 TIGR01377 soxA_mon sarcosine o 100.0 2.9E-43 6.3E-48 354.3 39.3 365 82-494 1-375 (380)
7 PRK12409 D-amino acid dehydrog 100.0 9.3E-43 2E-47 353.7 37.0 353 82-481 2-408 (410)
8 PF01266 DAO: FAD dependent ox 100.0 9.1E-43 2E-47 347.6 33.4 347 83-475 1-358 (358)
9 TIGR03197 MnmC_Cterm tRNA U-34 100.0 5.7E-42 1.2E-46 344.2 28.5 338 96-494 1-380 (381)
10 KOG2844 Dimethylglycine dehydr 100.0 2E-41 4.4E-46 333.4 31.3 365 81-494 39-416 (856)
11 COG0665 DadA Glycine/D-amino a 100.0 2.9E-41 6.3E-46 340.7 32.9 370 80-494 3-382 (387)
12 TIGR02352 thiamin_ThiO glycine 100.0 8.6E-41 1.9E-45 330.9 34.0 333 98-479 1-336 (337)
13 TIGR03364 HpnW_proposed FAD de 100.0 1.4E-40 3.1E-45 332.7 33.8 349 82-470 1-364 (365)
14 PRK11728 hydroxyglutarate oxid 100.0 1.2E-36 2.7E-41 306.7 35.1 350 81-476 2-393 (393)
15 KOG2820 FAD-dependent oxidored 100.0 3.2E-36 7E-41 275.8 28.8 376 79-494 5-395 (399)
16 PRK11101 glpA sn-glycerol-3-ph 100.0 1.7E-35 3.7E-40 308.2 37.1 341 81-479 6-370 (546)
17 KOG2853 Possible oxidoreductas 100.0 1.8E-33 4E-38 257.2 28.2 378 81-494 86-498 (509)
18 COG0579 Predicted dehydrogenas 100.0 2.6E-31 5.6E-36 260.7 33.0 358 81-479 3-375 (429)
19 PLN02464 glycerol-3-phosphate 100.0 2.5E-30 5.4E-35 272.2 31.2 352 80-478 70-453 (627)
20 TIGR03377 glycerol3P_GlpA glyc 100.0 1.2E-28 2.7E-33 256.4 32.9 325 97-479 1-347 (516)
21 PRK13369 glycerol-3-phosphate 100.0 1E-28 2.2E-33 255.8 29.8 347 80-479 5-377 (502)
22 KOG2852 Possible oxidoreductas 100.0 5.3E-29 1.1E-33 223.3 22.3 351 81-494 10-379 (380)
23 PRK12266 glpD glycerol-3-phosp 100.0 3.9E-28 8.6E-33 251.1 32.3 345 80-479 5-378 (508)
24 PTZ00383 malate:quinone oxidor 100.0 5.1E-27 1.1E-31 239.1 35.5 364 80-478 44-473 (497)
25 PRK13339 malate:quinone oxidor 100.0 1.5E-26 3.3E-31 234.6 29.7 366 81-479 6-452 (497)
26 COG0578 GlpA Glycerol-3-phosph 100.0 3.9E-26 8.5E-31 228.4 30.1 348 80-478 11-385 (532)
27 TIGR01320 mal_quin_oxido malat 100.0 1.2E-25 2.7E-30 229.9 33.0 238 82-332 1-270 (483)
28 KOG2665 Predicted FAD-dependen 100.0 1.5E-26 3.3E-31 210.0 22.4 392 41-477 9-452 (453)
29 PRK05257 malate:quinone oxidor 100.0 2.1E-25 4.5E-30 228.3 33.1 368 81-480 5-451 (494)
30 KOG3923 D-aspartate oxidase [A 99.9 1.9E-24 4.1E-29 195.4 18.8 318 81-477 3-334 (342)
31 KOG0042 Glycerol-3-phosphate d 99.9 5.4E-22 1.2E-26 192.6 16.2 354 79-477 65-446 (680)
32 PF06039 Mqo: Malate:quinone o 99.7 2.5E-14 5.3E-19 139.4 22.7 245 81-332 3-274 (488)
33 PRK06185 hypothetical protein; 99.5 7.9E-12 1.7E-16 127.0 22.4 205 235-477 106-319 (407)
34 TIGR02032 GG-red-SF geranylger 99.5 3.8E-11 8.1E-16 116.3 25.2 66 233-306 87-153 (295)
35 PRK07121 hypothetical protein; 99.4 2.2E-12 4.9E-17 133.9 16.3 196 80-301 19-240 (492)
36 PRK08773 2-octaprenyl-3-methyl 99.4 1.1E-11 2.5E-16 125.1 21.1 85 233-331 109-195 (392)
37 PRK10157 putative oxidoreducta 99.4 1.9E-11 4.2E-16 124.4 22.6 65 234-306 105-169 (428)
38 PRK06481 fumarate reductase fl 99.4 4.7E-12 1E-16 131.6 13.6 182 80-301 60-252 (506)
39 PRK08274 tricarballylate dehyd 99.4 1.2E-11 2.7E-16 127.7 15.8 184 81-301 4-193 (466)
40 COG2081 Predicted flavoprotein 99.4 1.3E-11 2.9E-16 118.2 14.4 163 81-300 3-167 (408)
41 PF03486 HI0933_like: HI0933-l 99.3 3.8E-12 8.2E-17 127.2 10.3 163 82-300 1-166 (409)
42 PRK07608 ubiquinone biosynthes 99.3 1.2E-10 2.7E-15 117.5 21.0 66 233-306 107-172 (388)
43 TIGR01813 flavo_cyto_c flavocy 99.3 1.3E-11 2.7E-16 126.7 13.2 184 83-301 1-193 (439)
44 PRK07333 2-octaprenyl-6-methox 99.3 1.7E-10 3.6E-15 117.2 21.1 66 233-306 107-172 (403)
45 PLN02697 lycopene epsilon cycl 99.3 9.1E-10 2E-14 113.6 26.0 89 233-332 188-276 (529)
46 PF00890 FAD_binding_2: FAD bi 99.3 7.6E-11 1.6E-15 120.2 15.9 198 83-305 1-208 (417)
47 PRK07494 2-octaprenyl-6-methox 99.3 2.7E-10 5.9E-15 115.0 19.7 65 234-306 108-172 (388)
48 COG0644 FixC Dehydrogenases (f 99.3 1.1E-09 2.5E-14 110.5 23.8 65 231-301 89-153 (396)
49 TIGR01988 Ubi-OHases Ubiquinon 99.3 8.8E-10 1.9E-14 111.1 22.9 66 234-306 103-168 (385)
50 PRK05714 2-octaprenyl-3-methyl 99.3 1E-09 2.3E-14 111.4 23.1 61 234-301 109-169 (405)
51 PRK07364 2-octaprenyl-6-methox 99.3 1.8E-09 4E-14 110.0 25.0 35 80-115 17-51 (415)
52 TIGR01984 UbiH 2-polyprenyl-6- 99.3 7E-10 1.5E-14 111.8 21.2 65 234-306 102-167 (382)
53 PRK06847 hypothetical protein; 99.3 2E-09 4.3E-14 108.2 24.3 65 231-302 101-165 (375)
54 PRK08244 hypothetical protein; 99.2 5.5E-10 1.2E-14 116.3 20.6 34 81-115 2-35 (493)
55 TIGR01790 carotene-cycl lycope 99.2 1.1E-09 2.3E-14 110.7 22.2 86 233-331 81-166 (388)
56 PRK07804 L-aspartate oxidase; 99.2 4.3E-10 9.3E-15 117.8 18.8 188 80-301 15-211 (541)
57 PRK06134 putative FAD-binding 99.2 2.3E-10 5E-15 120.8 16.9 68 230-303 210-281 (581)
58 TIGR00551 nadB L-aspartate oxi 99.2 1.5E-10 3.4E-15 119.8 15.2 185 81-301 2-190 (488)
59 TIGR02730 carot_isom carotene 99.2 3.3E-10 7.1E-15 117.9 17.2 70 223-301 218-287 (493)
60 PRK07395 L-aspartate oxidase; 99.2 2.4E-10 5.1E-15 119.6 16.1 183 81-301 9-198 (553)
61 PRK05732 2-octaprenyl-6-methox 99.2 4.4E-09 9.4E-14 106.5 24.8 63 238-307 113-175 (395)
62 PRK08641 sdhA succinate dehydr 99.2 2.5E-10 5.4E-15 120.5 16.1 186 81-301 3-201 (589)
63 PRK10015 oxidoreductase; Provi 99.2 6.9E-10 1.5E-14 112.9 18.2 59 235-300 106-164 (429)
64 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.1E-09 6.8E-14 107.4 22.8 62 234-301 109-170 (391)
65 PRK08071 L-aspartate oxidase; 99.2 2.4E-10 5.2E-15 118.7 15.0 180 81-301 3-191 (510)
66 PLN02463 lycopene beta cyclase 99.2 2E-09 4.3E-14 109.4 21.1 62 232-301 109-170 (447)
67 PRK04176 ribulose-1,5-biphosph 99.2 4.3E-10 9.4E-15 105.9 15.2 64 233-301 100-174 (257)
68 PRK08958 sdhA succinate dehydr 99.2 3.5E-10 7.5E-15 119.3 16.0 186 81-301 7-207 (588)
69 PTZ00139 Succinate dehydrogena 99.2 5.1E-10 1.1E-14 118.6 17.2 190 81-301 29-230 (617)
70 PRK06175 L-aspartate oxidase; 99.2 6.5E-10 1.4E-14 113.2 17.1 180 81-301 4-190 (433)
71 PRK12845 3-ketosteroid-delta-1 99.2 5.2E-10 1.1E-14 117.2 16.7 50 79-130 14-63 (564)
72 PRK06452 sdhA succinate dehydr 99.2 3.9E-10 8.5E-15 118.6 15.8 181 81-300 5-198 (566)
73 PRK09078 sdhA succinate dehydr 99.2 7.9E-10 1.7E-14 117.0 18.0 191 81-302 12-214 (598)
74 PRK08205 sdhA succinate dehydr 99.2 3.8E-10 8.2E-15 119.2 15.3 185 81-301 5-207 (583)
75 PRK06834 hypothetical protein; 99.2 3.9E-09 8.4E-14 109.2 22.4 62 237-306 100-161 (488)
76 TIGR01812 sdhA_frdA_Gneg succi 99.2 1E-09 2.3E-14 116.0 18.4 180 83-301 1-192 (566)
77 PRK12839 hypothetical protein; 99.2 4.4E-10 9.5E-15 118.1 15.0 63 234-301 211-277 (572)
78 PLN00128 Succinate dehydrogena 99.2 5.4E-10 1.2E-14 118.5 15.7 187 81-302 50-252 (635)
79 PLN02815 L-aspartate oxidase 99.2 4.2E-10 9.2E-15 118.2 14.8 183 81-301 29-223 (594)
80 TIGR00292 thiazole biosynthesi 99.2 1.5E-09 3.2E-14 102.0 16.8 63 235-301 98-171 (254)
81 PRK12844 3-ketosteroid-delta-1 99.2 6.5E-10 1.4E-14 116.7 15.8 48 81-129 6-53 (557)
82 PRK05945 sdhA succinate dehydr 99.2 6.9E-10 1.5E-14 117.2 15.9 182 81-301 3-198 (575)
83 PRK12842 putative succinate de 99.2 8.1E-10 1.8E-14 116.7 16.5 49 81-130 9-57 (574)
84 PRK08163 salicylate hydroxylas 99.2 2.5E-09 5.3E-14 108.4 19.4 64 233-302 105-168 (396)
85 PRK06854 adenylylsulfate reduc 99.2 7.4E-10 1.6E-14 117.3 16.0 173 81-301 11-196 (608)
86 PRK09126 hypothetical protein; 99.1 6.9E-09 1.5E-13 104.9 22.5 59 237-301 110-168 (392)
87 PF05834 Lycopene_cycl: Lycope 99.1 3.1E-08 6.8E-13 99.1 26.9 197 233-478 83-290 (374)
88 PRK12834 putative FAD-binding 99.1 1.1E-09 2.3E-14 115.2 16.2 50 80-130 3-54 (549)
89 PRK07573 sdhA succinate dehydr 99.1 1.7E-09 3.7E-14 115.1 17.8 189 80-301 34-233 (640)
90 PRK07057 sdhA succinate dehydr 99.1 1.4E-09 3E-14 115.0 16.8 186 81-301 12-212 (591)
91 PRK08401 L-aspartate oxidase; 99.1 2.5E-09 5.5E-14 110.1 18.3 173 82-303 2-178 (466)
92 PRK12835 3-ketosteroid-delta-1 99.1 2.5E-09 5.4E-14 112.8 18.0 50 80-130 10-59 (584)
93 TIGR01176 fum_red_Fp fumarate 99.1 1.9E-09 4.1E-14 113.5 17.0 183 81-301 3-196 (580)
94 PRK06263 sdhA succinate dehydr 99.1 1.6E-09 3.4E-14 113.8 16.4 186 81-301 7-198 (543)
95 PRK12843 putative FAD-binding 99.1 1.8E-09 4E-14 113.9 16.9 49 81-130 16-64 (578)
96 PRK09231 fumarate reductase fl 99.1 3.2E-09 7E-14 112.0 18.5 182 81-301 4-197 (582)
97 PRK07045 putative monooxygenas 99.1 1.3E-08 2.9E-13 102.7 22.2 61 237-301 106-166 (388)
98 PRK12837 3-ketosteroid-delta-1 99.1 2.2E-09 4.8E-14 111.9 16.8 44 81-126 7-50 (513)
99 COG1233 Phytoene dehydrogenase 99.1 1.4E-09 3.1E-14 112.4 15.3 67 223-298 213-279 (487)
100 PRK07803 sdhA succinate dehydr 99.1 2E-09 4.4E-14 114.4 16.7 185 81-301 8-214 (626)
101 PRK08849 2-octaprenyl-3-methyl 99.1 1.2E-08 2.7E-13 102.7 21.6 58 238-301 111-168 (384)
102 PRK08626 fumarate reductase fl 99.1 9.9E-10 2.1E-14 117.1 14.2 47 81-128 5-51 (657)
103 PRK07512 L-aspartate oxidase; 99.1 9.5E-10 2.1E-14 114.4 13.7 182 81-301 9-198 (513)
104 PRK06069 sdhA succinate dehydr 99.1 2.8E-09 6.1E-14 112.7 17.3 182 81-301 5-201 (577)
105 PRK07233 hypothetical protein; 99.1 1.7E-07 3.6E-12 96.2 29.4 65 225-299 189-253 (434)
106 PRK05192 tRNA uridine 5-carbox 99.1 4.2E-09 9.1E-14 108.8 16.4 69 226-301 90-158 (618)
107 TIGR02485 CobZ_N-term precorri 99.1 2.5E-09 5.4E-14 109.4 14.6 181 86-301 1-184 (432)
108 PRK09077 L-aspartate oxidase; 99.0 9.4E-09 2E-13 107.7 18.8 187 81-301 8-208 (536)
109 PRK08013 oxidoreductase; Provi 99.0 6.9E-08 1.5E-12 97.8 24.6 60 236-301 110-169 (400)
110 COG1635 THI4 Ribulose 1,5-bisp 99.0 4.4E-09 9.6E-14 92.4 13.4 38 81-119 30-67 (262)
111 PTZ00306 NADH-dependent fumara 99.0 2.2E-09 4.8E-14 121.5 14.6 192 79-301 407-621 (1167)
112 TIGR02734 crtI_fam phytoene de 99.0 2.8E-09 6.1E-14 111.3 14.2 67 224-299 209-275 (502)
113 PRK06753 hypothetical protein; 99.0 4.7E-08 1E-12 98.2 21.6 59 234-301 95-153 (373)
114 PRK08132 FAD-dependent oxidore 99.0 8.9E-08 1.9E-12 101.0 24.6 35 80-115 22-56 (547)
115 PF01494 FAD_binding_3: FAD bi 99.0 5.1E-08 1.1E-12 96.9 21.3 62 234-301 108-173 (356)
116 TIGR02023 BchP-ChlP geranylger 99.0 6.2E-08 1.3E-12 97.7 22.0 32 82-114 1-32 (388)
117 COG0654 UbiH 2-polyprenyl-6-me 99.0 8.9E-09 1.9E-13 103.7 15.8 59 237-301 104-163 (387)
118 PRK06126 hypothetical protein; 99.0 1.3E-07 2.7E-12 99.9 25.0 34 81-115 7-40 (545)
119 TIGR01811 sdhA_Bsu succinate d 99.0 1.2E-08 2.7E-13 107.9 16.8 187 84-301 1-197 (603)
120 PRK08275 putative oxidoreducta 99.0 8.8E-09 1.9E-13 108.4 15.5 180 81-301 9-201 (554)
121 TIGR00275 flavoprotein, HI0933 99.0 1.4E-08 2.9E-13 102.6 16.3 56 237-300 105-160 (400)
122 PRK07588 hypothetical protein; 99.0 2.8E-07 6.1E-12 93.2 25.9 56 238-301 104-159 (391)
123 PF01946 Thi4: Thi4 family; PD 99.0 1.4E-08 3.1E-13 89.8 14.1 63 234-301 93-166 (230)
124 PLN00093 geranylgeranyl diphos 99.0 5.1E-07 1.1E-11 92.3 26.5 36 79-115 37-72 (450)
125 PRK11445 putative oxidoreducta 98.9 7.3E-07 1.6E-11 88.6 26.4 32 82-115 2-33 (351)
126 PRK07843 3-ketosteroid-delta-1 98.9 1.9E-08 4E-13 105.9 15.7 49 81-130 7-55 (557)
127 PRK06184 hypothetical protein; 98.9 9.2E-09 2E-13 107.4 13.0 57 238-301 110-169 (502)
128 COG3380 Predicted NAD/FAD-depe 98.9 5.4E-09 1.2E-13 94.6 9.3 31 83-114 3-33 (331)
129 PF00732 GMC_oxred_N: GMC oxid 98.9 8.1E-09 1.7E-13 100.2 11.2 52 255-306 207-265 (296)
130 PRK13800 putative oxidoreducta 98.9 2.3E-08 4.9E-13 110.9 16.0 181 81-301 13-206 (897)
131 PLN02985 squalene monooxygenas 98.9 5.6E-07 1.2E-11 93.5 25.3 35 80-115 42-76 (514)
132 PRK13977 myosin-cross-reactive 98.9 4.3E-08 9.2E-13 100.5 16.2 61 237-301 226-294 (576)
133 PF01134 GIDA: Glucose inhibit 98.9 3.4E-08 7.3E-13 97.0 14.9 60 233-298 91-150 (392)
134 PF05430 Methyltransf_30: S-ad 98.9 3E-10 6.6E-15 93.2 0.5 40 15-54 82-123 (124)
135 PRK05868 hypothetical protein; 98.9 7.1E-07 1.5E-11 89.4 24.8 33 82-115 2-34 (372)
136 PLN02661 Putative thiazole syn 98.9 2.4E-08 5.1E-13 96.5 13.4 38 80-117 91-128 (357)
137 TIGR02061 aprA adenosine phosp 98.9 2.6E-08 5.7E-13 104.8 15.0 178 83-301 1-192 (614)
138 TIGR02028 ChlP geranylgeranyl 98.9 4.3E-07 9.4E-12 91.7 23.1 33 82-115 1-33 (398)
139 PRK06183 mhpA 3-(3-hydroxyphen 98.9 4.7E-07 1E-11 95.3 23.5 35 80-115 9-43 (538)
140 PF13738 Pyr_redox_3: Pyridine 98.9 1.3E-08 2.8E-13 92.9 10.3 58 237-301 82-139 (203)
141 PRK08294 phenol 2-monooxygenas 98.9 1.7E-07 3.8E-12 99.8 20.3 35 80-115 31-66 (634)
142 KOG2614 Kynurenine 3-monooxyge 98.9 4.1E-07 8.9E-12 87.9 20.7 35 81-116 2-36 (420)
143 TIGR01810 betA choline dehydro 98.9 1.1E-08 2.4E-13 107.3 11.1 50 255-306 208-262 (532)
144 COG1053 SdhA Succinate dehydro 98.9 1.5E-08 3.4E-13 105.1 11.9 189 80-300 5-202 (562)
145 PRK08850 2-octaprenyl-6-methox 98.9 4.6E-08 1E-12 99.3 15.2 58 238-301 112-169 (405)
146 PRK06617 2-octaprenyl-6-methox 98.9 8.8E-08 1.9E-12 96.1 16.9 61 234-301 101-161 (374)
147 COG0029 NadB Aspartate oxidase 98.9 6E-08 1.3E-12 95.6 14.9 183 83-301 9-197 (518)
148 TIGR01989 COQ6 Ubiquinone bios 98.9 7.4E-08 1.6E-12 98.7 16.3 66 235-301 115-184 (437)
149 PLN02612 phytoene desaturase 98.8 3.7E-06 8E-11 88.7 29.2 61 236-301 307-367 (567)
150 PRK07190 hypothetical protein; 98.8 4E-08 8.7E-13 101.5 14.1 57 238-301 110-166 (487)
151 TIGR03378 glycerol3P_GlpB glyc 98.8 1.5E-07 3.2E-12 93.5 17.4 67 235-307 261-330 (419)
152 TIGR00136 gidA glucose-inhibit 98.8 2.7E-08 5.8E-13 102.8 12.5 70 225-300 85-154 (617)
153 KOG1298 Squalene monooxygenase 98.8 4.1E-08 9E-13 93.1 12.0 160 79-301 43-209 (509)
154 PRK06996 hypothetical protein; 98.8 2.1E-07 4.6E-12 94.2 17.8 59 234-299 112-173 (398)
155 PRK02106 choline dehydrogenase 98.8 8.4E-08 1.8E-12 101.3 15.3 35 81-115 5-39 (560)
156 PRK07236 hypothetical protein; 98.8 1.6E-07 3.4E-12 94.7 16.5 34 81-115 6-39 (386)
157 PLN02927 antheraxanthin epoxid 98.8 1.1E-06 2.3E-11 92.8 22.6 35 80-115 80-114 (668)
158 PF12831 FAD_oxidored: FAD dep 98.8 4E-09 8.8E-14 107.4 4.4 37 83-120 1-37 (428)
159 PLN02172 flavin-containing mon 98.8 9.8E-08 2.1E-12 97.7 14.2 58 237-301 111-174 (461)
160 TIGR02732 zeta_caro_desat caro 98.8 6.2E-06 1.3E-10 85.2 26.9 76 225-306 209-291 (474)
161 TIGR01789 lycopene_cycl lycope 98.8 1.9E-06 4.1E-11 86.0 22.4 32 83-115 1-34 (370)
162 PLN02487 zeta-carotene desatur 98.7 1.1E-05 2.4E-10 84.4 27.9 73 226-305 286-366 (569)
163 PRK08243 4-hydroxybenzoate 3-m 98.7 3.1E-07 6.7E-12 92.8 15.7 34 81-115 2-35 (392)
164 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 3.5E-07 7.5E-12 92.3 15.8 34 81-115 2-35 (390)
165 PTZ00363 rab-GDP dissociation 98.7 7.6E-07 1.7E-11 90.3 18.1 66 226-299 224-289 (443)
166 TIGR02733 desat_CrtD C-3',4' d 98.7 4.2E-07 9.2E-12 94.7 16.7 66 225-299 223-293 (492)
167 TIGR03219 salicylate_mono sali 98.7 3.5E-07 7.7E-12 93.1 15.3 59 234-301 102-160 (414)
168 PRK07208 hypothetical protein; 98.7 4.5E-07 9.7E-12 94.3 15.3 39 80-119 3-41 (479)
169 TIGR01292 TRX_reduct thioredox 98.6 7.9E-07 1.7E-11 86.3 12.9 33 82-115 1-33 (300)
170 COG2303 BetA Choline dehydroge 98.6 8.4E-07 1.8E-11 92.8 13.8 34 80-114 6-39 (542)
171 TIGR02731 phytoene_desat phyto 98.5 1.8E-06 3.8E-11 89.1 15.8 60 236-300 212-276 (453)
172 PRK06475 salicylate hydroxylas 98.5 7E-07 1.5E-11 90.5 12.2 62 234-301 104-168 (400)
173 COG2072 TrkA Predicted flavopr 98.5 8.8E-07 1.9E-11 90.3 12.8 35 81-116 8-43 (443)
174 PRK05249 soluble pyridine nucl 98.5 2.1E-06 4.6E-11 88.7 15.8 57 238-301 217-273 (461)
175 PRK07538 hypothetical protein; 98.5 8.7E-07 1.9E-11 90.2 12.7 33 82-115 1-33 (413)
176 COG4121 Uncharacterized conser 98.5 1.4E-08 3.1E-13 92.8 -0.4 39 16-54 201-241 (252)
177 PF04820 Trp_halogenase: Trypt 98.5 3.8E-07 8.3E-12 93.3 9.7 67 229-301 146-212 (454)
178 COG2509 Uncharacterized FAD-de 98.5 4.9E-06 1.1E-10 81.4 16.1 73 232-310 168-240 (486)
179 PRK06327 dihydrolipoamide dehy 98.5 4.5E-06 9.7E-11 86.5 17.2 32 81-113 4-35 (475)
180 PRK06116 glutathione reductase 98.5 3.1E-06 6.6E-11 87.2 15.7 34 81-115 4-37 (450)
181 PF13450 NAD_binding_8: NAD(P) 98.5 1.6E-07 3.5E-12 68.8 4.4 34 86-120 1-34 (68)
182 KOG1399 Flavin-containing mono 98.5 7.6E-07 1.7E-11 89.7 9.9 59 238-300 91-153 (448)
183 TIGR01424 gluta_reduc_2 glutat 98.5 3.7E-06 8E-11 86.4 15.1 34 81-115 2-35 (446)
184 PRK05976 dihydrolipoamide dehy 98.4 5.9E-06 1.3E-10 85.6 16.3 36 80-116 3-38 (472)
185 TIGR01421 gluta_reduc_1 glutat 98.4 3.1E-06 6.6E-11 87.0 14.0 35 81-116 2-36 (450)
186 PRK06467 dihydrolipoamide dehy 98.4 6.5E-06 1.4E-10 85.1 15.8 34 81-115 4-37 (471)
187 KOG1238 Glucose dehydrogenase/ 98.4 3.6E-06 7.7E-11 86.2 13.3 36 80-115 56-91 (623)
188 PRK05329 anaerobic glycerol-3- 98.4 1.1E-05 2.3E-10 81.4 16.6 58 238-301 260-319 (422)
189 TIGR03143 AhpF_homolog putativ 98.4 4E-06 8.7E-11 88.4 14.2 34 81-115 4-37 (555)
190 PF13454 NAD_binding_9: FAD-NA 98.4 2.1E-06 4.5E-11 74.7 9.5 35 85-119 1-39 (156)
191 PRK15317 alkyl hydroperoxide r 98.4 4.2E-06 9E-11 87.6 13.6 57 237-300 266-322 (517)
192 KOG2404 Fumarate reductase, fl 98.4 3.1E-06 6.7E-11 78.7 10.8 39 83-122 11-49 (477)
193 COG0492 TrxB Thioredoxin reduc 98.4 4.3E-06 9.4E-11 80.4 12.2 35 81-116 3-38 (305)
194 PLN02568 polyamine oxidase 98.4 2.5E-05 5.4E-10 81.6 18.5 55 237-300 242-296 (539)
195 COG2907 Predicted NAD/FAD-bind 98.4 2.9E-06 6.3E-11 79.9 10.2 37 81-119 8-44 (447)
196 PLN02507 glutathione reductase 98.3 1.1E-05 2.3E-10 84.0 15.3 32 81-113 25-56 (499)
197 PRK06370 mercuric reductase; V 98.3 1.1E-05 2.3E-10 83.5 14.7 36 80-116 4-39 (463)
198 PLN02676 polyamine oxidase 98.3 1.6E-05 3.6E-10 82.2 16.0 38 81-119 26-64 (487)
199 TIGR01350 lipoamide_DH dihydro 98.3 1.7E-05 3.7E-10 82.0 15.9 34 82-116 2-35 (461)
200 KOG4254 Phytoene desaturase [C 98.3 3.5E-06 7.6E-11 81.9 9.8 70 223-301 253-322 (561)
201 PF00743 FMO-like: Flavin-bind 98.3 1.2E-06 2.6E-11 91.0 7.1 66 235-302 82-152 (531)
202 PRK06416 dihydrolipoamide dehy 98.3 1.1E-05 2.3E-10 83.6 14.0 34 81-115 4-37 (462)
203 PRK06115 dihydrolipoamide dehy 98.3 2.4E-05 5.2E-10 80.9 16.5 33 81-114 3-35 (466)
204 PLN02785 Protein HOTHEAD 98.3 1.3E-05 2.7E-10 84.6 13.8 34 80-115 54-87 (587)
205 TIGR03140 AhpF alkyl hydropero 98.3 1.3E-05 2.8E-10 83.9 13.8 56 238-300 268-323 (515)
206 PTZ00058 glutathione reductase 98.3 2.1E-05 4.6E-10 82.4 15.2 44 80-126 47-90 (561)
207 PRK07818 dihydrolipoamide dehy 98.2 4.2E-05 9.1E-10 79.1 16.3 35 81-116 4-38 (466)
208 PRK14694 putative mercuric red 98.2 3.1E-05 6.8E-10 80.1 15.3 36 80-116 5-40 (468)
209 PLN02546 glutathione reductase 98.2 2.2E-05 4.8E-10 82.3 14.0 32 81-113 79-110 (558)
210 KOG0685 Flavin-containing amin 98.2 1.5E-05 3.2E-10 78.5 11.6 39 81-119 21-59 (498)
211 COG3573 Predicted oxidoreducta 98.2 4E-05 8.7E-10 71.9 13.7 33 81-114 5-37 (552)
212 PRK09897 hypothetical protein; 98.1 3.4E-05 7.4E-10 80.0 13.8 38 82-119 2-41 (534)
213 KOG0029 Amine oxidase [Seconda 98.1 3.1E-06 6.8E-11 86.8 5.3 38 81-119 15-52 (501)
214 PTZ00153 lipoamide dehydrogena 98.1 3.7E-05 8E-10 81.8 13.2 33 81-114 116-148 (659)
215 KOG2415 Electron transfer flav 98.1 2.7E-05 5.9E-10 75.0 10.6 69 233-306 179-265 (621)
216 PRK07845 flavoprotein disulfid 98.1 8.8E-05 1.9E-09 76.7 15.2 34 82-116 2-35 (466)
217 COG3349 Uncharacterized conser 98.1 3.9E-06 8.3E-11 84.0 4.7 40 83-123 2-43 (485)
218 COG0445 GidA Flavin-dependent 98.0 1.6E-05 3.5E-10 79.5 8.8 63 234-301 97-159 (621)
219 COG1249 Lpd Pyruvate/2-oxoglut 98.0 9.3E-05 2E-09 75.1 14.1 35 80-115 3-37 (454)
220 TIGR01438 TGR thioredoxin and 98.0 0.00011 2.3E-09 76.3 14.6 33 81-114 2-34 (484)
221 PLN02576 protoporphyrinogen ox 98.0 8.8E-06 1.9E-10 85.0 5.5 47 81-128 12-61 (496)
222 PLN02268 probable polyamine ox 98.0 8.1E-06 1.8E-10 83.8 5.1 37 83-120 2-38 (435)
223 COG1252 Ndh NADH dehydrogenase 97.9 0.00089 1.9E-08 66.5 18.6 60 236-306 208-268 (405)
224 PRK11883 protoporphyrinogen ox 97.9 8.9E-06 1.9E-10 83.9 4.9 36 83-119 2-39 (451)
225 TIGR01423 trypano_reduc trypan 97.9 0.0003 6.4E-09 72.9 15.7 33 81-114 3-36 (486)
226 TIGR00562 proto_IX_ox protopor 97.9 1.1E-05 2.3E-10 83.6 5.0 38 81-119 2-43 (462)
227 PTZ00052 thioredoxin reductase 97.9 0.00049 1.1E-08 71.7 17.2 33 81-114 5-37 (499)
228 PRK05675 sdhA succinate dehydr 97.9 0.00015 3.2E-09 76.7 13.4 61 236-301 125-190 (570)
229 PRK06912 acoL dihydrolipoamide 97.9 0.00023 5E-09 73.5 14.6 33 83-116 2-34 (458)
230 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.7E-05 3.6E-10 78.7 5.2 37 82-119 2-38 (377)
231 PRK08010 pyridine nucleotide-d 97.8 1.9E-05 4.1E-10 81.1 5.1 45 81-126 3-47 (441)
232 COG1232 HemY Protoporphyrinoge 97.8 1.9E-05 4.1E-10 79.3 4.8 33 83-116 2-36 (444)
233 COG1231 Monoamine oxidase [Ami 97.8 2.4E-05 5.2E-10 77.0 4.9 40 81-121 7-46 (450)
234 PRK12416 protoporphyrinogen ox 97.8 2.3E-05 4.9E-10 81.1 5.1 60 227-298 219-278 (463)
235 PRK09754 phenylpropionate diox 97.8 0.00054 1.2E-08 69.3 14.8 59 236-302 185-243 (396)
236 PRK05335 tRNA (uracil-5-)-meth 97.8 2.7E-05 5.9E-10 77.5 4.9 34 81-115 2-35 (436)
237 PTZ00367 squalene epoxidase; P 97.8 2.5E-05 5.4E-10 81.9 4.7 34 81-115 33-66 (567)
238 COG1148 HdrA Heterodisulfide r 97.7 2.6E-05 5.6E-10 76.7 4.2 40 79-119 122-161 (622)
239 COG3075 GlpB Anaerobic glycero 97.7 5.1E-05 1.1E-09 71.1 4.8 35 81-116 2-36 (421)
240 PRK07251 pyridine nucleotide-d 97.6 6.4E-05 1.4E-09 77.2 5.2 34 81-115 3-36 (438)
241 PRK09564 coenzyme A disulfide 97.6 0.00041 8.8E-09 71.4 10.9 32 83-115 2-35 (444)
242 TIGR03169 Nterm_to_SelD pyridi 97.6 0.0036 7.9E-08 62.5 17.3 56 239-305 193-248 (364)
243 COG0562 Glf UDP-galactopyranos 97.6 8.3E-05 1.8E-09 69.6 5.0 34 82-116 2-35 (374)
244 KOG2311 NAD/FAD-utilizing prot 97.6 0.00071 1.5E-08 66.7 11.0 34 80-114 27-60 (679)
245 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 8E-05 1.7E-09 74.6 4.6 32 83-115 2-33 (433)
246 COG4529 Uncharacterized protei 97.6 0.00058 1.3E-08 68.1 10.5 42 259-301 124-165 (474)
247 TIGR03315 Se_ygfK putative sel 97.5 9.8E-05 2.1E-09 81.5 5.3 35 81-116 537-571 (1012)
248 KOG1335 Dihydrolipoamide dehyd 97.5 0.0027 5.9E-08 61.1 14.0 39 81-120 39-77 (506)
249 PRK07846 mycothione reductase; 97.5 0.0012 2.6E-08 67.9 12.9 32 82-116 2-33 (451)
250 TIGR02053 MerA mercuric reduct 97.5 0.0001 2.2E-09 76.2 5.1 34 82-116 1-34 (463)
251 PRK04965 NADH:flavorubredoxin 97.5 0.0046 1E-07 62.1 16.9 63 237-306 183-246 (377)
252 PRK06292 dihydrolipoamide dehy 97.5 0.00011 2.4E-09 75.9 5.0 34 81-115 3-36 (460)
253 KOG1276 Protoporphyrinogen oxi 97.5 0.00027 5.8E-09 68.8 7.0 35 81-116 11-47 (491)
254 PRK10262 thioredoxin reductase 97.5 0.00012 2.6E-09 71.8 4.9 35 81-116 6-40 (321)
255 PRK12831 putative oxidoreducta 97.5 0.00016 3.4E-09 74.5 5.8 35 81-116 140-174 (464)
256 PF07992 Pyr_redox_2: Pyridine 97.4 0.00015 3.2E-09 65.8 4.6 31 83-114 1-31 (201)
257 PLN02328 lysine-specific histo 97.4 0.00016 3.6E-09 77.9 5.6 38 81-119 238-275 (808)
258 PTZ00318 NADH dehydrogenase-li 97.4 0.00088 1.9E-08 68.4 10.4 34 81-115 10-43 (424)
259 PF00070 Pyr_redox: Pyridine n 97.4 0.00023 5.1E-09 54.0 4.5 33 83-116 1-33 (80)
260 PRK12779 putative bifunctional 97.4 0.00015 3.3E-09 80.5 4.9 34 81-115 306-339 (944)
261 PRK06567 putative bifunctional 97.4 0.00022 4.7E-09 77.6 5.8 34 81-115 383-416 (1028)
262 TIGR01372 soxA sarcosine oxida 97.4 0.00023 5.1E-09 80.0 6.2 38 80-118 162-199 (985)
263 PLN02529 lysine-specific histo 97.4 0.00023 4.9E-09 76.4 5.7 35 81-116 160-194 (738)
264 PLN02852 ferredoxin-NADP+ redu 97.4 0.00027 5.9E-09 72.5 5.8 36 81-116 26-62 (491)
265 TIGR01816 sdhA_forward succina 97.3 0.0028 6E-08 67.1 13.3 59 237-301 119-182 (565)
266 TIGR01316 gltA glutamate synth 97.3 0.00032 7E-09 72.1 6.0 34 81-115 133-166 (449)
267 PRK13748 putative mercuric red 97.3 0.00023 4.9E-09 75.6 4.9 35 81-116 98-132 (561)
268 PRK09853 putative selenate red 97.3 0.0003 6.5E-09 77.5 5.3 35 81-116 539-573 (1019)
269 PTZ00188 adrenodoxin reductase 97.3 0.00038 8.2E-09 70.6 5.5 36 81-116 39-74 (506)
270 PRK12778 putative bifunctional 97.3 0.0004 8.7E-09 76.2 6.1 34 81-115 431-464 (752)
271 PRK12810 gltD glutamate syntha 97.2 0.00051 1.1E-08 71.1 5.6 35 81-116 143-177 (471)
272 PRK12769 putative oxidoreducta 97.2 0.00044 9.6E-09 74.6 5.2 35 81-116 327-361 (654)
273 PRK11749 dihydropyrimidine deh 97.2 0.00057 1.2E-08 70.5 5.9 35 81-116 140-174 (457)
274 PRK12775 putative trifunctiona 97.2 0.00048 1E-08 77.3 5.6 35 81-116 430-464 (1006)
275 PRK14727 putative mercuric red 97.2 0.00042 9E-09 72.0 4.8 34 81-115 16-49 (479)
276 PRK12814 putative NADPH-depend 97.1 0.00063 1.4E-08 73.2 5.8 35 81-116 193-227 (652)
277 TIGR02462 pyranose_ox pyranose 97.1 0.00052 1.1E-08 71.3 4.9 34 82-116 1-34 (544)
278 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00045 9.7E-09 75.7 4.3 32 83-115 2-35 (765)
279 PLN03000 amine oxidase 97.1 0.0007 1.5E-08 73.3 5.2 38 81-119 184-221 (881)
280 PF06100 Strep_67kDa_ant: Stre 97.0 0.012 2.6E-07 59.3 13.4 39 82-120 3-44 (500)
281 KOG2960 Protein involved in th 97.0 0.0002 4.3E-09 62.9 0.7 41 81-121 76-117 (328)
282 TIGR03862 flavo_PP4765 unchara 97.0 0.01 2.2E-07 58.9 12.4 66 224-300 75-141 (376)
283 TIGR01318 gltD_gamma_fam gluta 97.0 0.0013 2.8E-08 67.9 6.2 35 81-116 141-175 (467)
284 PRK14989 nitrite reductase sub 97.0 0.014 3E-07 64.6 14.3 58 239-301 189-246 (847)
285 PRK12809 putative oxidoreducta 96.9 0.0014 2.9E-08 70.6 6.2 35 81-116 310-344 (639)
286 KOG3855 Monooxygenase involved 96.9 0.019 4.2E-07 56.0 12.9 36 81-116 36-74 (481)
287 PRK12770 putative glutamate sy 96.8 0.0017 3.6E-08 64.6 5.5 35 81-116 18-52 (352)
288 TIGR02374 nitri_red_nirB nitri 96.8 0.024 5.1E-07 62.6 14.8 55 240-301 185-239 (785)
289 PLN02976 amine oxidase 96.8 0.0016 3.4E-08 73.4 5.2 38 81-119 693-730 (1713)
290 TIGR01317 GOGAT_sm_gam glutama 96.8 0.0018 3.9E-08 67.2 5.3 35 81-116 143-177 (485)
291 COG0493 GltD NADPH-dependent g 96.7 0.0011 2.5E-08 67.4 3.6 34 82-116 124-157 (457)
292 KOG4716 Thioredoxin reductase 96.7 0.0049 1.1E-07 58.4 7.2 48 80-128 18-66 (503)
293 PRK12771 putative glutamate sy 96.7 0.0026 5.6E-08 67.5 6.0 35 81-116 137-171 (564)
294 PF13434 K_oxygenase: L-lysine 96.6 0.011 2.4E-07 58.2 9.0 35 81-115 2-36 (341)
295 PRK13984 putative oxidoreducta 96.5 0.0031 6.7E-08 67.6 5.2 37 81-118 283-319 (604)
296 KOG0404 Thioredoxin reductase 96.5 0.013 2.9E-07 52.2 8.0 58 237-303 70-127 (322)
297 PRK06116 glutathione reductase 96.5 0.029 6.4E-07 57.8 12.0 33 81-114 167-199 (450)
298 PF13434 K_oxygenase: L-lysine 96.3 0.03 6.4E-07 55.2 10.5 33 81-114 190-224 (341)
299 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0037 8.1E-08 59.0 3.4 33 82-115 4-36 (439)
300 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0066 1.4E-07 58.5 4.9 37 82-118 21-58 (468)
301 TIGR03452 mycothione_red mycot 96.2 0.0057 1.2E-07 63.0 4.8 33 81-116 2-34 (452)
302 PF02737 3HCDH_N: 3-hydroxyacy 96.1 0.0069 1.5E-07 53.8 4.3 31 83-114 1-31 (180)
303 KOG1336 Monodehydroascorbate/f 96.0 0.095 2.1E-06 52.4 12.0 57 239-300 257-313 (478)
304 KOG0399 Glutamate synthase [Am 96.0 0.0094 2E-07 64.7 5.1 35 81-116 1785-1819(2142)
305 PRK13512 coenzyme A disulfide 95.9 0.008 1.7E-07 61.7 4.5 33 83-115 3-36 (438)
306 PRK14694 putative mercuric red 95.9 0.099 2.2E-06 54.2 12.5 33 81-114 178-210 (468)
307 TIGR01423 trypano_reduc trypan 95.7 0.059 1.3E-06 55.9 9.9 34 81-114 187-222 (486)
308 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.014 2.9E-07 50.7 4.3 31 83-114 1-31 (157)
309 PF02558 ApbA: Ketopantoate re 95.3 0.025 5.5E-07 48.5 4.6 30 84-114 1-30 (151)
310 cd05292 LDH_2 A subgroup of L- 95.1 0.12 2.5E-06 50.3 9.2 91 83-184 2-120 (308)
311 PRK06129 3-hydroxyacyl-CoA deh 95.1 0.023 5E-07 55.3 4.2 31 83-114 4-34 (308)
312 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.022 4.8E-07 50.8 3.4 31 83-114 2-32 (185)
313 PRK07819 3-hydroxybutyryl-CoA 95.0 0.034 7.3E-07 53.4 4.9 32 82-114 6-37 (286)
314 TIGR03467 HpnE squalene-associ 95.0 1.4 3.1E-05 44.6 17.1 67 225-300 187-254 (419)
315 PRK07066 3-hydroxybutyryl-CoA 95.0 0.03 6.5E-07 54.4 4.4 32 82-114 8-39 (321)
316 PF00996 GDI: GDP dissociation 94.9 0.035 7.5E-07 56.2 4.8 65 225-299 223-287 (438)
317 COG0446 HcaD Uncharacterized N 94.6 0.041 8.9E-07 55.7 4.7 34 82-116 137-170 (415)
318 KOG2755 Oxidoreductase [Genera 94.5 0.027 5.8E-07 51.7 2.6 31 84-114 2-33 (334)
319 COG0569 TrkA K+ transport syst 94.5 0.048 1E-06 50.3 4.4 32 83-115 2-33 (225)
320 PRK08293 3-hydroxybutyryl-CoA 94.4 0.051 1.1E-06 52.3 4.5 32 82-114 4-35 (287)
321 PRK09260 3-hydroxybutyryl-CoA 94.3 0.05 1.1E-06 52.4 4.4 31 83-114 3-33 (288)
322 PRK01438 murD UDP-N-acetylmura 94.3 0.053 1.1E-06 56.4 4.7 32 82-114 17-48 (480)
323 PRK07530 3-hydroxybutyryl-CoA 94.2 0.065 1.4E-06 51.7 4.8 32 82-114 5-36 (292)
324 COG3634 AhpF Alkyl hydroperoxi 94.1 0.029 6.3E-07 53.5 2.1 33 80-113 210-242 (520)
325 TIGR02354 thiF_fam2 thiamine b 94.0 0.076 1.6E-06 48.0 4.6 35 81-116 21-56 (200)
326 PRK09754 phenylpropionate diox 94.0 0.063 1.4E-06 54.3 4.5 33 82-115 145-177 (396)
327 PRK05976 dihydrolipoamide dehy 93.7 0.072 1.6E-06 55.3 4.3 34 81-115 180-213 (472)
328 PRK07251 pyridine nucleotide-d 93.7 0.08 1.7E-06 54.4 4.6 34 81-115 157-190 (438)
329 PRK06035 3-hydroxyacyl-CoA deh 93.7 0.08 1.7E-06 51.1 4.4 32 82-114 4-35 (291)
330 COG1249 Lpd Pyruvate/2-oxoglut 93.6 0.089 1.9E-06 53.7 4.6 34 81-115 173-206 (454)
331 PRK05708 2-dehydropantoate 2-r 93.6 0.091 2E-06 51.0 4.6 32 82-114 3-34 (305)
332 PRK04965 NADH:flavorubredoxin 93.5 0.087 1.9E-06 52.9 4.5 33 82-115 142-174 (377)
333 COG3486 IucD Lysine/ornithine 93.5 0.3 6.6E-06 48.0 7.8 35 80-114 4-38 (436)
334 PRK02705 murD UDP-N-acetylmura 93.4 0.086 1.9E-06 54.5 4.4 32 83-115 2-33 (459)
335 PRK05808 3-hydroxybutyryl-CoA 93.4 0.092 2E-06 50.4 4.3 31 83-114 5-35 (282)
336 TIGR01763 MalateDH_bact malate 93.4 0.096 2.1E-06 50.8 4.4 32 82-114 2-34 (305)
337 PRK06249 2-dehydropantoate 2-r 93.3 0.11 2.4E-06 50.7 4.8 34 81-115 5-38 (313)
338 PLN02545 3-hydroxybutyryl-CoA 93.3 0.12 2.6E-06 50.0 4.9 32 82-114 5-36 (295)
339 PF01593 Amino_oxidase: Flavin 93.3 0.072 1.6E-06 54.1 3.5 43 257-302 225-267 (450)
340 PRK06467 dihydrolipoamide dehy 93.2 0.099 2.1E-06 54.2 4.5 33 82-115 175-207 (471)
341 PRK07846 mycothione reductase; 93.2 0.1 2.2E-06 53.8 4.5 34 81-115 166-199 (451)
342 TIGR01350 lipoamide_DH dihydro 93.2 0.099 2.2E-06 54.0 4.4 34 81-115 170-203 (461)
343 TIGR01421 gluta_reduc_1 glutat 93.2 0.1 2.2E-06 53.8 4.4 33 81-114 166-198 (450)
344 PRK08229 2-dehydropantoate 2-r 93.1 0.12 2.5E-06 51.2 4.6 32 82-114 3-34 (341)
345 KOG0405 Pyridine nucleotide-di 93.1 0.16 3.4E-06 48.8 5.0 34 80-114 19-52 (478)
346 PRK06130 3-hydroxybutyryl-CoA 93.0 0.13 2.9E-06 50.0 4.9 32 82-114 5-36 (311)
347 COG1250 FadB 3-hydroxyacyl-CoA 92.9 0.11 2.4E-06 49.8 3.9 32 82-114 4-35 (307)
348 TIGR02053 MerA mercuric reduct 92.9 0.12 2.6E-06 53.5 4.4 32 82-114 167-198 (463)
349 PRK12921 2-dehydropantoate 2-r 92.9 0.12 2.7E-06 50.1 4.3 30 83-113 2-31 (305)
350 PRK06115 dihydrolipoamide dehy 92.8 0.12 2.6E-06 53.5 4.4 33 81-114 174-206 (466)
351 PRK06912 acoL dihydrolipoamide 92.8 0.13 2.8E-06 53.2 4.5 34 81-115 170-203 (458)
352 KOG2495 NADH-dehydrogenase (ub 92.7 11 0.00024 37.7 17.1 90 208-307 243-336 (491)
353 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.12 2.6E-06 46.3 3.5 33 81-114 11-43 (298)
354 PRK06522 2-dehydropantoate 2-r 92.6 0.15 3.1E-06 49.5 4.5 31 83-114 2-32 (304)
355 PF01488 Shikimate_DH: Shikima 92.6 0.21 4.5E-06 42.0 4.8 33 81-114 12-45 (135)
356 PRK06416 dihydrolipoamide dehy 92.6 0.13 2.9E-06 53.1 4.4 32 82-114 173-204 (462)
357 PF13738 Pyr_redox_3: Pyridine 92.6 0.16 3.4E-06 45.8 4.4 34 81-115 167-200 (203)
358 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.6 0.14 3.1E-06 53.2 4.5 32 82-114 6-37 (503)
359 COG1004 Ugd Predicted UDP-gluc 92.6 0.15 3.3E-06 49.9 4.4 31 83-114 2-32 (414)
360 PRK13512 coenzyme A disulfide 92.5 0.14 3.1E-06 52.5 4.5 33 82-115 149-181 (438)
361 PRK07818 dihydrolipoamide dehy 92.5 0.14 3E-06 53.1 4.4 33 81-114 172-204 (466)
362 PRK06370 mercuric reductase; V 92.4 0.15 3.2E-06 52.9 4.3 34 81-115 171-204 (463)
363 PRK14106 murD UDP-N-acetylmura 92.4 0.16 3.5E-06 52.3 4.6 33 81-114 5-37 (450)
364 PRK06719 precorrin-2 dehydroge 92.4 0.22 4.8E-06 43.1 4.7 32 81-113 13-44 (157)
365 PRK11730 fadB multifunctional 92.4 0.14 3E-06 55.8 4.3 32 82-114 314-345 (715)
366 TIGR02437 FadB fatty oxidation 92.4 0.14 3.1E-06 55.6 4.4 33 81-114 313-345 (714)
367 PRK08268 3-hydroxy-acyl-CoA de 92.3 0.15 3.3E-06 53.1 4.4 32 82-114 8-39 (507)
368 TIGR01470 cysG_Nterm siroheme 92.3 0.21 4.5E-06 45.3 4.7 32 82-114 10-41 (205)
369 PRK14618 NAD(P)H-dependent gly 92.3 0.19 4.1E-06 49.4 4.9 32 82-114 5-36 (328)
370 TIGR03385 CoA_CoA_reduc CoA-di 92.3 0.16 3.6E-06 51.8 4.5 33 82-115 138-170 (427)
371 PRK05249 soluble pyridine nucl 92.3 0.16 3.4E-06 52.6 4.4 34 81-115 175-208 (461)
372 PF13241 NAD_binding_7: Putati 92.3 0.17 3.6E-06 40.3 3.6 34 81-115 7-40 (103)
373 PRK07531 bifunctional 3-hydrox 92.3 0.18 3.9E-06 52.5 4.9 32 82-114 5-36 (495)
374 PRK06718 precorrin-2 dehydroge 92.1 0.23 5.1E-06 44.9 4.8 33 81-114 10-42 (202)
375 PRK06292 dihydrolipoamide dehy 92.1 0.19 4E-06 52.0 4.7 34 81-115 169-202 (460)
376 TIGR03452 mycothione_red mycot 92.1 0.18 3.9E-06 51.9 4.6 33 81-114 169-201 (452)
377 PF01262 AlaDh_PNT_C: Alanine 92.1 0.21 4.6E-06 43.8 4.4 33 81-114 20-52 (168)
378 PRK07688 thiamine/molybdopteri 92.0 0.22 4.8E-06 49.0 4.8 35 81-116 24-59 (339)
379 TIGR02441 fa_ox_alpha_mit fatt 91.9 0.18 3.9E-06 55.1 4.4 33 81-114 335-367 (737)
380 cd01080 NAD_bind_m-THF_DH_Cycl 91.9 0.26 5.6E-06 43.1 4.6 33 81-114 44-77 (168)
381 PF00899 ThiF: ThiF family; I 91.8 0.17 3.8E-06 42.4 3.4 35 81-116 2-37 (135)
382 cd01487 E1_ThiF_like E1_ThiF_l 91.7 0.26 5.6E-06 43.5 4.5 33 83-116 1-34 (174)
383 PRK15116 sulfur acceptor prote 91.5 0.27 5.9E-06 46.4 4.7 35 81-116 30-65 (268)
384 PRK06327 dihydrolipoamide dehy 91.5 0.22 4.7E-06 51.7 4.5 33 82-115 184-216 (475)
385 COG0686 Ald Alanine dehydrogen 91.4 0.19 4.2E-06 47.4 3.4 33 81-114 168-200 (371)
386 PRK11064 wecC UDP-N-acetyl-D-m 91.4 0.22 4.7E-06 50.6 4.2 32 82-114 4-35 (415)
387 PRK12475 thiamine/molybdopteri 91.4 0.27 5.9E-06 48.3 4.7 35 81-116 24-59 (338)
388 TIGR03026 NDP-sugDHase nucleot 91.3 0.21 4.6E-06 50.7 4.1 31 83-114 2-32 (411)
389 PRK14619 NAD(P)H-dependent gly 91.3 0.26 5.7E-06 47.9 4.6 32 82-114 5-36 (308)
390 PTZ00153 lipoamide dehydrogena 91.3 0.23 5E-06 53.4 4.4 33 82-115 313-345 (659)
391 PTZ00082 L-lactate dehydrogena 91.3 0.33 7.2E-06 47.4 5.2 34 81-115 6-40 (321)
392 TIGR02440 FadJ fatty oxidation 91.2 0.22 4.9E-06 54.1 4.3 33 82-114 305-337 (699)
393 PTZ00058 glutathione reductase 91.2 0.23 4.9E-06 52.5 4.2 34 81-115 237-270 (561)
394 PTZ00052 thioredoxin reductase 91.2 0.25 5.4E-06 51.6 4.5 32 82-114 183-214 (499)
395 PRK11154 fadJ multifunctional 91.1 0.22 4.8E-06 54.2 4.1 34 81-114 309-342 (708)
396 PRK07845 flavoprotein disulfid 91.0 0.26 5.7E-06 51.0 4.5 32 82-114 178-209 (466)
397 cd05191 NAD_bind_amino_acid_DH 91.0 0.46 1E-05 36.3 4.8 33 81-113 23-55 (86)
398 COG1748 LYS9 Saccharopine dehy 91.0 0.3 6.5E-06 48.5 4.5 32 82-114 2-34 (389)
399 PRK08644 thiamine biosynthesis 90.9 0.35 7.7E-06 44.1 4.7 35 81-116 28-63 (212)
400 PRK14620 NAD(P)H-dependent gly 90.9 0.28 6.1E-06 48.1 4.4 31 83-114 2-32 (326)
401 TIGR01424 gluta_reduc_2 glutat 90.8 0.27 5.8E-06 50.6 4.3 33 81-114 166-198 (446)
402 TIGR03140 AhpF alkyl hydropero 90.8 0.26 5.6E-06 51.8 4.2 32 82-114 353-384 (515)
403 TIGR02356 adenyl_thiF thiazole 90.8 0.38 8.1E-06 43.6 4.7 35 81-116 21-56 (202)
404 PRK00094 gpsA NAD(P)H-dependen 90.8 0.3 6.5E-06 47.8 4.4 31 83-114 3-33 (325)
405 PRK14727 putative mercuric red 90.8 0.29 6.3E-06 50.9 4.5 32 82-114 189-220 (479)
406 TIGR00518 alaDH alanine dehydr 90.6 0.34 7.4E-06 48.3 4.6 33 81-114 167-199 (370)
407 PF02254 TrkA_N: TrkA-N domain 90.6 0.4 8.7E-06 38.9 4.4 31 84-115 1-31 (116)
408 TIGR01438 TGR thioredoxin and 90.6 0.28 6.1E-06 51.0 4.2 32 82-114 181-212 (484)
409 PRK09564 coenzyme A disulfide 90.6 0.31 6.8E-06 50.1 4.5 32 82-114 150-181 (444)
410 PRK10262 thioredoxin reductase 90.5 0.29 6.3E-06 47.9 4.1 33 81-114 146-178 (321)
411 PRK08010 pyridine nucleotide-d 90.5 0.31 6.8E-06 50.0 4.5 32 82-114 159-190 (441)
412 PLN02507 glutathione reductase 90.5 0.29 6.4E-06 51.1 4.2 34 81-115 203-236 (499)
413 TIGR01316 gltA glutamate synth 90.5 0.28 6.1E-06 50.5 4.1 32 82-114 273-304 (449)
414 PRK07417 arogenate dehydrogena 90.5 0.31 6.6E-06 46.7 4.1 31 83-114 2-32 (279)
415 TIGR03143 AhpF_homolog putativ 90.4 0.29 6.4E-06 51.8 4.3 34 81-115 143-176 (555)
416 cd01483 E1_enzyme_family Super 90.4 0.45 9.7E-06 40.4 4.7 33 83-116 1-34 (143)
417 TIGR02374 nitri_red_nirB nitri 90.4 0.31 6.6E-06 53.9 4.5 32 82-114 141-172 (785)
418 PRK13748 putative mercuric red 90.4 0.3 6.5E-06 51.9 4.3 32 82-114 271-302 (561)
419 cd01339 LDH-like_MDH L-lactate 90.4 0.29 6.3E-06 47.4 3.9 30 84-114 1-31 (300)
420 PRK06223 malate dehydrogenase; 90.2 0.39 8.4E-06 46.7 4.5 32 82-114 3-35 (307)
421 PRK15057 UDP-glucose 6-dehydro 90.2 0.35 7.5E-06 48.6 4.3 30 83-114 2-31 (388)
422 PRK12831 putative oxidoreducta 90.1 0.33 7E-06 50.2 4.1 33 81-114 281-313 (464)
423 PF03446 NAD_binding_2: NAD bi 90.0 0.42 9E-06 41.6 4.2 32 82-114 2-33 (163)
424 PRK12549 shikimate 5-dehydroge 89.9 0.44 9.6E-06 45.7 4.6 33 81-114 127-160 (284)
425 PLN02546 glutathione reductase 89.9 0.36 7.8E-06 51.0 4.3 33 81-114 252-284 (558)
426 PRK04148 hypothetical protein; 89.9 0.29 6.2E-06 40.8 2.8 31 82-114 18-48 (134)
427 KOG1371 UDP-glucose 4-epimeras 89.9 0.3 6.6E-06 46.5 3.3 31 82-113 3-34 (343)
428 PRK14989 nitrite reductase sub 89.8 0.35 7.7E-06 53.7 4.4 33 82-115 146-178 (847)
429 PRK12770 putative glutamate sy 89.8 0.37 8.1E-06 47.8 4.2 32 82-114 173-205 (352)
430 TIGR00562 proto_IX_ox protopor 89.5 26 0.00057 36.0 17.9 53 238-299 226-278 (462)
431 PLN02353 probable UDP-glucose 89.4 0.46 9.9E-06 49.0 4.6 32 82-114 2-35 (473)
432 COG5044 MRS6 RAB proteins gera 89.4 0.57 1.2E-05 45.4 4.8 35 81-116 6-40 (434)
433 KOG3851 Sulfide:quinone oxidor 89.2 0.39 8.4E-06 45.6 3.4 34 81-114 39-73 (446)
434 cd05311 NAD_bind_2_malic_enz N 89.1 0.54 1.2E-05 43.4 4.4 32 82-114 26-60 (226)
435 cd05291 HicDH_like L-2-hydroxy 88.9 0.52 1.1E-05 45.8 4.4 31 83-114 2-34 (306)
436 TIGR01505 tartro_sem_red 2-hyd 88.9 0.48 1E-05 45.6 4.1 31 83-114 1-31 (291)
437 PTZ00117 malate dehydrogenase; 88.5 0.64 1.4E-05 45.4 4.7 34 81-115 5-39 (319)
438 TIGR02355 moeB molybdopterin s 88.4 0.69 1.5E-05 43.1 4.7 35 81-116 24-59 (240)
439 TIGR01915 npdG NADPH-dependent 88.3 0.66 1.4E-05 42.6 4.4 31 83-114 2-33 (219)
440 PRK15317 alkyl hydroperoxide r 88.3 0.51 1.1E-05 49.6 4.1 32 82-114 352-383 (517)
441 TIGR01292 TRX_reduct thioredox 88.3 0.54 1.2E-05 45.2 4.0 33 81-114 141-173 (300)
442 PRK00066 ldh L-lactate dehydro 88.2 0.81 1.8E-05 44.6 5.2 33 81-114 6-40 (315)
443 PRK08328 hypothetical protein; 88.1 0.78 1.7E-05 42.5 4.8 35 81-116 27-62 (231)
444 TIGR03736 PRTRC_ThiF PRTRC sys 88.1 0.73 1.6E-05 42.8 4.5 35 81-116 11-56 (244)
445 PF00056 Ldh_1_N: lactate/mala 87.9 0.95 2.1E-05 38.3 4.8 31 83-114 2-35 (141)
446 cd01075 NAD_bind_Leu_Phe_Val_D 87.9 0.81 1.8E-05 41.3 4.6 32 82-114 29-60 (200)
447 PTZ00142 6-phosphogluconate de 87.5 0.6 1.3E-05 48.1 4.0 32 82-114 2-33 (470)
448 PRK05690 molybdopterin biosynt 87.5 0.82 1.8E-05 42.8 4.6 35 81-116 32-67 (245)
449 PRK09424 pntA NAD(P) transhydr 87.5 0.67 1.5E-05 48.0 4.3 33 81-114 165-197 (509)
450 cd05293 LDH_1 A subgroup of L- 87.4 0.84 1.8E-05 44.4 4.7 33 81-114 3-37 (312)
451 cd00757 ThiF_MoeB_HesA_family 87.4 0.87 1.9E-05 42.1 4.6 35 81-116 21-56 (228)
452 COG1087 GalE UDP-glucose 4-epi 87.3 0.75 1.6E-05 43.5 4.1 29 84-113 3-32 (329)
453 COG1179 Dinucleotide-utilizing 87.2 0.78 1.7E-05 41.9 4.0 37 81-118 30-67 (263)
454 cd01078 NAD_bind_H4MPT_DH NADP 87.0 0.97 2.1E-05 40.6 4.7 32 82-114 29-61 (194)
455 PRK11749 dihydropyrimidine deh 87.0 0.71 1.5E-05 47.7 4.2 33 81-114 273-306 (457)
456 PRK15461 NADH-dependent gamma- 87.0 0.77 1.7E-05 44.4 4.2 31 83-114 3-33 (296)
457 PRK08306 dipicolinate synthase 86.9 0.91 2E-05 43.8 4.6 33 81-114 152-184 (296)
458 PLN00112 malate dehydrogenase 86.9 1.1 2.3E-05 45.6 5.3 33 81-114 100-142 (444)
459 COG1893 ApbA Ketopantoate redu 86.8 0.78 1.7E-05 44.5 4.1 32 83-115 2-33 (307)
460 PF13478 XdhC_C: XdhC Rossmann 86.7 0.67 1.5E-05 38.9 3.2 30 84-114 1-30 (136)
461 PRK12548 shikimate 5-dehydroge 86.7 0.96 2.1E-05 43.5 4.7 32 82-114 127-159 (289)
462 PTZ00318 NADH dehydrogenase-li 86.6 0.79 1.7E-05 46.8 4.3 44 256-306 243-286 (424)
463 TIGR00507 aroE shikimate 5-deh 86.5 0.95 2.1E-05 43.1 4.5 33 81-114 117-149 (270)
464 cd05290 LDH_3 A subgroup of L- 86.4 0.96 2.1E-05 43.9 4.5 31 83-114 1-33 (307)
465 KOG1439 RAB proteins geranylge 86.3 0.46 9.9E-06 46.6 2.2 41 80-121 3-43 (440)
466 PRK00141 murD UDP-N-acetylmura 86.1 1 2.2E-05 46.7 4.8 32 82-114 16-47 (473)
467 TIGR02853 spore_dpaA dipicolin 86.0 1 2.2E-05 43.2 4.5 33 81-114 151-183 (287)
468 cd00401 AdoHcyase S-adenosyl-L 85.9 0.97 2.1E-05 45.5 4.3 33 81-114 202-234 (413)
469 PRK08223 hypothetical protein; 85.8 1.2 2.5E-05 42.5 4.6 35 81-116 27-62 (287)
470 cd01065 NAD_bind_Shikimate_DH 85.8 1.4 3E-05 37.7 4.9 32 82-114 20-52 (155)
471 cd00755 YgdL_like Family of ac 85.8 1.2 2.6E-05 41.2 4.6 35 81-116 11-46 (231)
472 cd01485 E1-1_like Ubiquitin ac 85.7 1.2 2.6E-05 40.2 4.4 35 81-116 19-54 (198)
473 PRK11199 tyrA bifunctional cho 85.7 1 2.2E-05 45.0 4.5 33 81-114 98-131 (374)
474 PRK02472 murD UDP-N-acetylmura 85.6 0.91 2E-05 46.7 4.2 32 82-114 6-37 (447)
475 PRK11559 garR tartronate semia 85.6 1.1 2.4E-05 43.2 4.5 32 82-114 3-34 (296)
476 PRK00258 aroE shikimate 5-dehy 85.2 1.2 2.6E-05 42.5 4.5 33 81-114 123-156 (278)
477 PRK04690 murD UDP-N-acetylmura 85.1 1 2.2E-05 46.6 4.2 32 82-114 9-40 (468)
478 PRK09897 hypothetical protein; 85.1 9.9 0.00021 40.0 11.5 22 81-102 191-212 (534)
479 TIGR00561 pntA NAD(P) transhyd 85.1 1.2 2.6E-05 46.1 4.6 33 81-114 164-196 (511)
480 cd01492 Aos1_SUMO Ubiquitin ac 85.1 1.4 3E-05 39.7 4.6 35 81-116 21-56 (197)
481 PRK07502 cyclohexadienyl dehyd 85.1 1 2.2E-05 43.7 4.1 32 82-114 7-40 (307)
482 PRK04308 murD UDP-N-acetylmura 85.1 1.2 2.6E-05 45.8 4.7 32 82-114 6-37 (445)
483 PRK05600 thiamine biosynthesis 85.0 1.3 2.7E-05 44.3 4.7 35 81-116 41-76 (370)
484 TIGR00872 gnd_rel 6-phosphoglu 84.8 1.1 2.4E-05 43.2 4.2 31 83-114 2-32 (298)
485 COG0771 MurD UDP-N-acetylmuram 84.7 0.92 2E-05 46.0 3.6 34 81-115 7-40 (448)
486 PRK01710 murD UDP-N-acetylmura 84.6 1.1 2.4E-05 46.2 4.3 33 82-115 15-47 (458)
487 PRK12778 putative bifunctional 84.6 1 2.3E-05 49.6 4.3 32 82-114 571-603 (752)
488 TIGR03376 glycerol3P_DH glycer 84.4 1.2 2.6E-05 43.8 4.2 31 83-114 1-39 (342)
489 cd01338 MDH_choloroplast_like 84.2 1.3 2.8E-05 43.3 4.3 32 82-114 3-42 (322)
490 PF13460 NAD_binding_10: NADH( 84.2 1.5 3.3E-05 38.6 4.4 31 84-115 1-32 (183)
491 TIGR01772 MDH_euk_gproteo mala 84.1 1.5 3.3E-05 42.5 4.6 32 83-115 1-35 (312)
492 PRK12416 protoporphyrinogen ox 84.0 3.2 6.8E-05 42.9 7.3 38 83-120 3-45 (463)
493 PRK09496 trkA potassium transp 83.8 1.4 3E-05 45.5 4.6 31 83-114 2-32 (453)
494 PRK09599 6-phosphogluconate de 83.8 1.3 2.9E-05 42.8 4.2 31 83-114 2-32 (301)
495 PLN02695 GDP-D-mannose-3',5'-e 83.7 1.8 3.9E-05 43.3 5.2 33 81-114 21-54 (370)
496 PRK08017 oxidoreductase; Provi 83.7 1.6 3.4E-05 40.9 4.6 31 83-114 4-35 (256)
497 PF03435 Saccharop_dh: Sacchar 83.6 1.3 2.9E-05 44.5 4.3 32 84-115 1-33 (386)
498 PRK05442 malate dehydrogenase; 83.6 1.4 3.1E-05 43.0 4.2 33 81-114 4-44 (326)
499 PRK03369 murD UDP-N-acetylmura 83.5 1.4 3E-05 45.9 4.4 32 82-114 13-44 (488)
500 TIGR01809 Shik-DH-AROM shikima 83.4 1.6 3.4E-05 41.8 4.5 33 81-114 125-158 (282)
No 1
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=3.1e-59 Score=498.64 Aligned_cols=414 Identities=20% Similarity=0.231 Sum_probs=325.1
Q ss_pred eceeecccccccccccccccceee-eecCCCCCcccc-ccccCCCCCcCCCCCCCCCCCCCCCCCCCcccEEEECCCHHH
Q 011027 16 QESVNVWGSRGRRQSCRTSAAFAF-KSSFFGKKPLSL-SVNKTRPGRALGPTGYSRLNPITASSRCHTFDVIIIGAGIIG 93 (495)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~gf~~-k~~g~g~kr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGiaG 93 (495)
+.+++|||+||.||++|+.+||.| |+||||+||||| |++..-.....+.+|..+ +.++ ..+||+||||||+|
T Consensus 199 ~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~~~~~~w~~~--~~~~----~~~dVvIIGaGIaG 272 (662)
T PRK01747 199 GATLATFTSAGFVRRGLQEAGFTVRKVKGFGRKREMLVGELEQTLPAPLAAPWFAR--PGSP----KARDAAIIGGGIAG 272 (662)
T ss_pred CCEEEEeehHHHHHHHHHHcCCeeeecCCCchhhhhhhehhccccCCCCCCCcccC--CCcC----CCCCEEEECccHHH
Confidence 678999999999999999999999 999999999999 876311111122345432 1111 14799999999999
Q ss_pred HHHHHHHHhcCCccEEEEcCC-cCCCCcccCCcceeeeccCCCCchHHHHHH----HHHHHHHHHHHHHHhcCCCCcccc
Q 011027 94 LTIARQLLVGSDLSVAVVDKV-VPCSGATGAGQGYIWMVHRTPGSEIWDLAL----RSNKLWKMLADSLRDQGLDPLQVI 168 (495)
Q Consensus 94 ls~A~~La~~~G~~V~liE~~-~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (495)
+++||+|+ ++|++|+|||++ .++.|+|++++|++++..........++.. ++.++|+++. . .+.+ +
T Consensus 273 ~s~A~~La-~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~-~---~~~~----~ 343 (662)
T PRK01747 273 AALALALA-RRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP-A---AGVA----F 343 (662)
T ss_pred HHHHHHHH-HCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-h---cCCC----C
Confidence 99999998 599999999998 478999999999999887655555556554 5667777665 2 2332 4
Q ss_pred ceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHhh
Q 011027 169 GWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNR 248 (495)
Q Consensus 169 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~~ 248 (495)
.+..+|.+.+..++++.+.+++..+.... +...++++++++.+.+|. ....+++++|++|+++|..++..|.+.++
T Consensus 344 ~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~---~~~~~g~~~p~~G~v~p~~l~~aL~~~a~ 419 (662)
T PRK01747 344 DHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGL---PVPCGGIFYPQGGWLCPAELCRALLALAG 419 (662)
T ss_pred CCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCC---CCCCCcEEeCCCCeeCHHHHHHHHHHhcc
Confidence 57889999999887776666665543322 234678999999988752 34578999999999999999999999887
Q ss_pred hhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEE
Q 011027 249 HFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLV 328 (495)
Q Consensus 249 ~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~ 328 (495)
+ | ++++++++|+++..+ ++ .|.|.+.+|..+.+|.||+|+|+|+..|.+. ..+|+.|+|||++.
T Consensus 420 ~-G----v~i~~~~~V~~i~~~--~~-~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~--------~~lpl~p~RGqv~~ 483 (662)
T PRK01747 420 Q-Q----LTIHFGHEVARLERE--DD-GWQLDFAGGTLASAPVVVLANGHDAARFAQT--------AHLPLYSVRGQVSH 483 (662)
T ss_pred c-C----cEEEeCCEeeEEEEe--CC-EEEEEECCCcEEECCEEEECCCCCccccccc--------cCCCcccccceEEe
Confidence 7 6 688999999999875 33 4668888887776899999999999988663 25899999999998
Q ss_pred EeecCcc-ccccccccccccccccCCCCCCCcccccceeeeeeeee-eccccEEecccccccCCCccccHHHHHHHHHHH
Q 011027 329 LENFNSL-KLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATT-DVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406 (495)
Q Consensus 329 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~l 406 (495)
++..... .++..++..+| ..| ..+|.+++|+|++.++.+..++.++++.+++.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~Y------------------------~~p~~~~g~~~iGat~~~~~~~~~~~~~~~~~~~~~l 539 (662)
T PRK01747 484 LPTTPALSALKQVLCYDGY------------------------LTPQPANGTHCIGASYDRDDTDTAFREADHQENLERL 539 (662)
T ss_pred ecCCccccccCceeECCce------------------------eCCCCCCCceEeCcccCCCCCCCCCCHHHHHHHHHHH
Confidence 8754321 11222222233 224 456789999999888777788889999999999
Q ss_pred HhhcCCc-----ccccccccccCceeeeeeccCCCCCCcEEee----------------------cCCCCcEEEEecCCC
Q 011027 407 AEFYPKL-----RDLCLADFISNRKVRIGLRPYMPDGKPVIGP----------------------VPGLSKVFLATGHEG 459 (495)
Q Consensus 407 ~~~~p~l-----~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~----------------------~~~~~~l~~~~G~g~ 459 (495)
.+++|.+ .+..+ ...|+|+|++|+|++|+||+ +|..+|+|+++||||
T Consensus 540 ~~~~P~l~~~~~~~~~~------~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs 613 (662)
T PRK01747 540 AECLPQALWAKEVDVSA------LQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGS 613 (662)
T ss_pred HHhCCCchhhhccCccc------cCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccc
Confidence 9999976 22222 23699999999999999999 556789999999999
Q ss_pred CChhhhHHHHHHHHHHHhCCCCCCC---CCCCccCCcc
Q 011027 460 LGLSLALGTAELVADMVLTNPLKVD---SAPFAVQGRC 494 (495)
Q Consensus 460 ~G~~~ap~~a~~la~~i~g~~~~~~---~~~~~p~R~~ 494 (495)
+||++||++|++||++|+|++.|++ +++|+|+||.
T Consensus 614 ~Gl~~ap~~a~~lA~li~g~~~p~~~~~~~~~~p~Rf~ 651 (662)
T PRK01747 614 RGLCSAPLGAELLASQIEGEPLPLERDLLAALHPNRFW 651 (662)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhChHHHH
Confidence 9999999999999999999999987 5899999996
No 2
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=1e-47 Score=391.27 Aligned_cols=362 Identities=27% Similarity=0.383 Sum_probs=289.4
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC-cCCCCcccCCcceeeeccCCCC-------------------------
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV-VPCSGATGAGQGYIWMVHRTPG------------------------- 136 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~-~~~~gaS~~~~g~i~~~~~~~~------------------------- 136 (495)
||+||||||+|+++|++|+ ++|++|+|||++ .++.++|++++|++++.+..+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~-~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLA-QAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD 80 (416)
T ss_pred EEEEECCcHHHHHHHHHHH-HCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCC
Confidence 7999999999999999998 489999999998 4689999999999988754331
Q ss_pred -------------------------chHHHHHHHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHH
Q 011027 137 -------------------------SEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKER 191 (495)
Q Consensus 137 -------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 191 (495)
....++..++.++|+++.+. .+++ +.|.++|.+.+..++++.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~---~~~~----~~~~~~G~l~~a~~~~~~~~l~~~ 153 (416)
T PRK00711 81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAE---TGIQ----YEGRQGGTLQLFRTQQQLDAAAKD 153 (416)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCc----cccccCcEEEEECCHHHHHHHHHH
Confidence 01234455677777777654 3443 568889999999998888888888
Q ss_pred HHHHHHcCCceEEcChhhHHHhCCCCcc--CCcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEE
Q 011027 192 VKQLCEAGLRAEYLSSSDLLQAEPELMV--GEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLR 269 (495)
Q Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~~p~l~~--~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~ 269 (495)
.+.+++.|+++++++++++.+.+|.+.. +...+++++|.++++||.++++.|.+.+++.| ++++++++|+++..
T Consensus 154 ~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G----~~i~~~~~V~~i~~ 229 (416)
T PRK00711 154 IAVLEEAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLG----VKFRFNTPVDGLLV 229 (416)
T ss_pred HHHHHHcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCC----CEEEcCCEEEEEEe
Confidence 8888889999999999999999998752 45678899999999999999999999888776 68899999999987
Q ss_pred ecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCcccccccccccccccc
Q 011027 270 SNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGH 349 (495)
Q Consensus 270 ~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~ 349 (495)
+ +++++.|.++++++ .+|.||+|+|+|+..+++.+ +.++|+.|++||++.++..... ..+.. ...
T Consensus 230 ~--~~~~~~v~t~~~~~-~a~~VV~a~G~~~~~l~~~~------g~~~pi~p~rg~~~~~~~~~~~--~~p~~--~~~-- 294 (416)
T PRK00711 230 E--GGRITGVQTGGGVI-TADAYVVALGSYSTALLKPL------GVDIPVYPLKGYSLTVPITDED--RAPVS--TVL-- 294 (416)
T ss_pred c--CCEEEEEEeCCcEE-eCCEEEECCCcchHHHHHHh------CCCcccCCccceEEEEecCCCC--CCCce--eEE--
Confidence 5 45566788877754 46999999999999988865 4568999999998766432211 11110 000
Q ss_pred ccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCCCccccHHHHHHHHHHHHhhcCCcccccccccccCceeee
Q 011027 350 HDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRI 429 (495)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~ 429 (495)
+ ..+.+ .+ +..++++++|++.+....+..++.+..+.+.+.+.++||.+.+..+. +.|+
T Consensus 295 -----------~-~~~~~-~~--~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~------~~w~ 353 (416)
T PRK00711 295 -----------D-ETYKI-AI--TRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGGDLSQA------TFWT 353 (416)
T ss_pred -----------e-cccCE-EE--eecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCccccccc------ceee
Confidence 0 00111 11 23467899998876666666677788888999999999998765543 3599
Q ss_pred eeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHHHHHHHhCCCCCCCCCCCccCCc
Q 011027 430 GLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPLKVDSAPFAVQGR 493 (495)
Q Consensus 430 g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~la~~i~g~~~~~~~~~~~p~R~ 493 (495)
|+|++|+|++|+||++| .+|+|+++||+|+||++||++|+++|++|.|++.++|++.|+|+||
T Consensus 354 G~r~~t~D~~PiIG~~~-~~gl~~a~G~~g~G~~~ap~~g~~la~li~g~~~~~~~~~f~~~Rf 416 (416)
T PRK00711 354 GLRPMTPDGTPIVGATR-YKNLWLNTGHGTLGWTMACGSGQLLADLISGRKPAIDADDLSVARY 416 (416)
T ss_pred ccCCCCCCCCCEeCCcC-CCCEEEecCCchhhhhhhhhHHHHHHHHHcCCCCCCCccccCccCC
Confidence 99999999999999986 5899999999999999999999999999999999999999999998
No 3
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=9.3e-47 Score=382.66 Aligned_cols=364 Identities=21% Similarity=0.292 Sum_probs=292.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
.+||+||||||+|+++||+|+++.|+ +|+|||++.++.|+|+++.|+++..+..+. ..++...+.++|+++.+.++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~--~~~~~~~s~~l~~~l~~~~~- 106 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPE--SAELYEHAMKLWEGLSQDLN- 106 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCcc--ccHHHHHHHHHHHHHHHHhC-
Confidence 68999999999999999999853485 999999999999999999999987765443 34677788999998876643
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccC-----CcceEEEeCCCcee
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVG-----EDSRAAFLPYDSQL 234 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~-----~~~~~~~~~~~g~~ 234 (495)
++ +.|.++|.+.++.++++.+.+++..+.++..|++.++++++++.+.+|.+... ...++++.+.+|++
T Consensus 107 --~~----~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v 180 (407)
T TIGR01373 107 --YN----VMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTA 180 (407)
T ss_pred --CC----cCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcC
Confidence 22 55889999999999888888888888888889999999999999999988643 24688999999999
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccc
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIV 314 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~ 314 (495)
+|..++..|.+.+.+.| ++++.+++|+++...+ +++++.|.+.+|.+. ++.||+|+|+|+..+.+.+ +
T Consensus 181 ~p~~l~~~l~~~a~~~G----v~~~~~~~V~~i~~~~-~~~~~~v~t~~g~i~-a~~vVvaagg~~~~l~~~~------g 248 (407)
T TIGR01373 181 RHDAVAWGYARGADRRG----VDIIQNCEVTGFIRRD-GGRVIGVETTRGFIG-AKKVGVAVAGHSSVVAAMA------G 248 (407)
T ss_pred CHHHHHHHHHHHHHHCC----CEEEeCCEEEEEEEcC-CCcEEEEEeCCceEE-CCEEEECCChhhHHHHHHc------C
Confidence 99999999998888876 6899999999997642 456777888888654 6889999999999887754 4
Q ss_pred cccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEeccccc-ccCCCcc
Q 011027 315 LDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQ-FAGFNTE 393 (495)
Q Consensus 315 ~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~-~~~~~~~ 393 (495)
..+|+.+.+++++..++.+.. ++..+.. .... .+..|..+|++++|++.+ ....+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------------~~~~--~y~~p~~~g~~~ig~~~~~~~~~~~~ 306 (407)
T TIGR01373 249 FRLPIESHPLQALVSEPLKPI-IDTVVMS-------------------NAVH--FYVSQSDKGELVIGGGIDGYNSYAQR 306 (407)
T ss_pred CCCCcCcccceEEEecCCCCC-cCCeEEe-------------------CCCc--eEEEEcCCceEEEecCCCCCCccCcC
Confidence 568889999998766543211 1111110 0011 133455677899998754 3334444
Q ss_pred ccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHHHH
Q 011027 394 VEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVA 473 (495)
Q Consensus 394 ~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~la 473 (495)
.+.+..+.+++.+.++||.+....+. +.|+|+|++|+|++|+||++| .+|+|+++||+|+|+++||++|+++|
T Consensus 307 ~~~~~~~~l~~~~~~~~P~l~~~~~~------~~w~G~~~~t~D~~PiIg~~~-~~gl~~a~G~~g~G~~~ap~~G~~la 379 (407)
T TIGR01373 307 GNLPTLEHVLAAILEMFPILSRVRML------RSWGGIVDVTPDGSPIIGKTP-LPNLYLNCGWGTGGFKATPASGTVFA 379 (407)
T ss_pred CCHHHHHHHHHHHHHhCCCcCCCCeE------EEeccccccCCCCCceeCCCC-CCCeEEEeccCCcchhhchHHHHHHH
Confidence 56777889999999999998765543 359999999999999999998 59999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCccCCcc
Q 011027 474 DMVLTNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 474 ~~i~g~~~~~~~~~~~p~R~~ 494 (495)
++|.++..+.+++.|+|.||.
T Consensus 380 ~li~~~~~~~~~~~f~~~Rf~ 400 (407)
T TIGR01373 380 HTLARGEPHDINAPFTLDRFH 400 (407)
T ss_pred HHHhCCCCCCCCcccCHhHhc
Confidence 999988777778999999985
No 4
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=7.6e-44 Score=358.05 Aligned_cols=363 Identities=21% Similarity=0.311 Sum_probs=277.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCC--CCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPC--SGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~--~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+||||||+|+++|++|+ ++|++|+|||++..+ .++|..+.++++..+... ....++..++.++|+++.+..+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~-~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~-~~~~~l~~~s~~~~~~l~~~~~ 80 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLA-RRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEG-PAYVPLVLRAQELWRELERESG 80 (376)
T ss_pred cccEEEECCCHHHHHHHHHHH-HCCCeEEEEecccCCCCCcCcCCcceEEEeeccCC-chhhHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999998 489999999998664 355555566665543322 2456788999999999876543
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
.+ + +..+|.+.+..++ .+.+++..+.+++.|++.++++++++.+++|.++......++|.|.+|+++|.+
T Consensus 81 ---~~----~-~~~~G~l~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~ 150 (376)
T PRK11259 81 ---EP----L-FVRTGVLNLGPAD--SDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPEL 150 (376)
T ss_pred ---Cc----c-EEEECCEEEcCCC--CHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHH
Confidence 21 2 6788999887554 335556667777889999999999999999988755567899999999999999
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccc
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIP 318 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~ 318 (495)
++..+.+.+.+.| +.++++++|+++..+ ++ .+.|++++|.+ .+|.||+|+|+|+..|++.+ .+|
T Consensus 151 ~~~~~~~~~~~~g----v~i~~~~~v~~i~~~--~~-~~~v~~~~g~~-~a~~vV~A~G~~~~~l~~~~--------~~~ 214 (376)
T PRK11259 151 AIKAHLRLAREAG----AELLFNEPVTAIEAD--GD-GVTVTTADGTY-EAKKLVVSAGAWVKDLLPPL--------ELP 214 (376)
T ss_pred HHHHHHHHHHHCC----CEEECCCEEEEEEee--CC-eEEEEeCCCEE-EeeEEEEecCcchhhhcccc--------cCC
Confidence 9999988887765 688999999999875 33 46788888864 56999999999999887753 578
Q ss_pred eeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeecccc-EEecccccc------cCCC
Q 011027 319 VKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGN-LVLGSSRQF------AGFN 391 (495)
Q Consensus 319 l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~iG~t~~~------~~~~ 391 (495)
+.|.+++++.+++..... ... ..|.+... ..+.. . ++..|..+++ +++|++... .+.+
T Consensus 215 i~~~~~~~~~~~~~~~~~--~~~------~~p~~~~~---~~~~~--~--~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~ 279 (376)
T PRK11259 215 LTPVRQVLAWFQADGRYS--EPN------RFPAFIWE---VPDGD--Q--YYGFPAENGPGLKIGKHNGGQEITSPDERD 279 (376)
T ss_pred ceEEEEEEEEEecCCccC--Ccc------CCCEEEEe---cCCCc--e--eEeccCCCCCceEEEECCCCCCCCChhhcc
Confidence 999999999987642210 000 00110000 00001 1 1223445666 899987641 1111
Q ss_pred cccc-HHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHH
Q 011027 392 TEVE-QTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAE 470 (495)
Q Consensus 392 ~~~~-~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~ 470 (495)
...+ .+..+.+++.+.++||.+.. +. +.|+|+|++|||++|+||++|+.+|+|+++||+|+|++++|.+|+
T Consensus 280 ~~~~~~~~~~~l~~~~~~~~P~~~~--~~------~~~~g~~~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~ 351 (376)
T PRK11259 280 RFVTVAEDGAELRPFLRNYLPGVGP--CL------RGAACTYTNTPDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGE 351 (376)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCCc--cc------cceEEecccCCCCCceeecCCCCCCEEEEecccchhhhccHHHHH
Confidence 1222 55678899999999998765 32 259999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCccCCcc
Q 011027 471 LVADMVLTNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 471 ~la~~i~g~~~~~~~~~~~p~R~~ 494 (495)
++|++|.+++.+.+++.|+|+||.
T Consensus 352 ~la~li~~~~~~~~~~~~~~~Rf~ 375 (376)
T PRK11259 352 ILADLAQDGTSDFDLSPFSLSRFA 375 (376)
T ss_pred HHHHHHhcCCCCCCcCccCccccc
Confidence 999999998888899999999995
No 5
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=8.3e-44 Score=365.13 Aligned_cols=364 Identities=18% Similarity=0.242 Sum_probs=271.5
Q ss_pred CCCCCCcccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCcCCCCcccCCcceeeeccCC--------CCchHHHHHH
Q 011027 75 ASSRCHTFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVVPCSGATGAGQGYIWMVHRT--------PGSEIWDLAL 144 (495)
Q Consensus 75 ~~~~~~~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--------~~~~~~~l~~ 144 (495)
.+..+.++||+||||||+|+++||+|++ + |.+|+|||++.++.|+|++|+|++.+.... ......++..
T Consensus 18 ~L~~~~~~DVvIIGgGi~Gls~A~~La~-~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~ 96 (460)
T TIGR03329 18 PLVGDTQADVCIVGGGFTGLWTAIMIKQ-QRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVK 96 (460)
T ss_pred CCCCCceeCEEEECCCHHHHHHHHHHHH-hCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHH
Confidence 3444567899999999999999999985 5 999999999988999999999976532111 0112234455
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCc-eEEcChhhHHHhCCCCccCCcc
Q 011027 145 RSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLR-AEYLSSSDLLQAEPELMVGEDS 223 (495)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~p~l~~~~~~ 223 (495)
.+.+.|+.+.+...+.+++ ++|..+|.+++..++.+.+.+++..+.+++.|++ +++++++++.+.+|. ....
T Consensus 97 ~~~~~~~~~~~l~~~~~i~----~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~---~~~~ 169 (460)
T TIGR03329 97 ASEQAVLEIAAFCEQHNID----AQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS---ARHL 169 (460)
T ss_pred HHHHHHHHHHHHHHHhCCC----CCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC---Ccce
Confidence 5566666655544556664 6788899999999888888888888888888887 689999999999873 2356
Q ss_pred eEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHH
Q 011027 224 RAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303 (495)
Q Consensus 224 ~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l 303 (495)
+|++.|.++++||.++++.|.+.+++.| ++++++++|+++.. + +.+.|+|.+|.+ .+|.||+|+|+|+..+
T Consensus 170 ~g~~~~~~g~i~P~~l~~~L~~~a~~~G----v~i~~~t~V~~i~~---~-~~~~v~t~~g~v-~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 170 EGFYSPVAASVQPGLLVRGLRRVALELG----VEIHENTPMTGLEE---G-QPAVVRTPDGQV-TADKVVLALNAWMASH 240 (460)
T ss_pred EEEEeCCCeEECHHHHHHHHHHHHHHcC----CEEECCCeEEEEee---C-CceEEEeCCcEE-ECCEEEEccccccccc
Confidence 7899999999999999999999998877 69999999999864 2 246788888875 4699999999999988
Q ss_pred HHHhhhccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecc
Q 011027 304 MHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGS 383 (495)
Q Consensus 304 ~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~ 383 (495)
++.+ ..++.|+++|++.+++.+.. +.......++. + .+.+.. ..++++..+|++++|+
T Consensus 241 ~~~~--------~~~~~p~~~~~~~t~pl~~~-~~~~~~~~~~~----~-------~d~~~~--~~y~r~~~dgrll~G~ 298 (460)
T TIGR03329 241 FPQF--------ERSIAIVSSDMVITEPAPDL-LAATGLDHGTS----V-------LDSRIF--VHYYRSTPDGRLMLGK 298 (460)
T ss_pred Chhh--------cCeEEEeccceEecCCCcHH-HHhhcCCCCce----E-------ecchhh--hhheeECCCCcEEEcC
Confidence 8764 35677888998887754321 11000000000 0 011111 1133455678899987
Q ss_pred cccc---cCC-C--ccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecC
Q 011027 384 SRQF---AGF-N--TEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGH 457 (495)
Q Consensus 384 t~~~---~~~-~--~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~ 457 (495)
.... .+. + ........+.+.+.+.++||.|.+.++. +.|+|+|++|+|++|+||++|..+|+|+++||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L~~~~i~------~~W~G~~~~t~D~~P~iG~~~~~~gl~~a~G~ 372 (460)
T TIGR03329 299 GGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPALAEVPIA------ASWNGPSDRSVTGLPFFGRLNGQPNVFYGFGY 372 (460)
T ss_pred CccccccCcccccccCCchHHHHHHHHHHHHhCCCcCCCeee------EEEeceeCCCCCCCceeeeecCCCCEEEEeCc
Confidence 5321 111 0 1122233567889999999999877664 35999999999999999999888999999999
Q ss_pred CCCChhhhHHHHHHHHHHHhCCCCCC
Q 011027 458 EGLGLSLALGTAELVADMVLTNPLKV 483 (495)
Q Consensus 458 g~~G~~~ap~~a~~la~~i~g~~~~~ 483 (495)
+|+|++++|++|++||++|+|+..++
T Consensus 373 ~G~Gv~~a~~~G~~lA~li~g~~~~~ 398 (460)
T TIGR03329 373 SGNGVAPSRMGGQILSSLVLGLDNPW 398 (460)
T ss_pred CCCChhHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999976553
No 6
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=2.9e-43 Score=354.30 Aligned_cols=365 Identities=21% Similarity=0.255 Sum_probs=271.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCC--CCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPC--SGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~--~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
+||+||||||+|+++||+|+ ++|++|+|||+...+ .++|..+.+++...+ ......++..++.++|+++.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La-~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~~~~~l~~~s~~~~~~l~~~~~- 76 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLA-KHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PEDFYTPMMLECYQLWAQLEKEAG- 76 (380)
T ss_pred CcEEEECCCHHHHHHHHHHH-HCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--CchhHhHHHHHHHHHHHHHHHHhC-
Confidence 58999999999999999998 589999999997653 244444555554332 233466888999999999876542
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHH
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLA 239 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~ 239 (495)
++ + +.++|.+.+...+. +.+++..+.+++.|++.++++++++.+.+|.+..+....+++.|.+|+++|.++
T Consensus 77 --~~----~-~~~~G~l~~~~~~~--~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~ 147 (380)
T TIGR01377 77 --TK----L-HRQTGLLLLGPKEN--QFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKA 147 (380)
T ss_pred --Ce----e-EeecCeEEEcCCCc--HHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHH
Confidence 21 2 46789988876544 566667777788899999999999999999887555667999999999999999
Q ss_pred HHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccce
Q 011027 240 VAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPV 319 (495)
Q Consensus 240 ~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l 319 (495)
++.|.+.+++.| ++++.+++|+++..+ ++ .+.|.+.++.+ .+|.||+|+|+|+..|.+.+ +..+|+
T Consensus 148 ~~~l~~~~~~~g----~~~~~~~~V~~i~~~--~~-~~~v~~~~~~i-~a~~vV~aaG~~~~~l~~~~------g~~~~~ 213 (380)
T TIGR01377 148 LRALQELAEAHG----ATVRDGTKVVEIEPT--EL-LVTVKTTKGSY-QANKLVVTAGAWTSKLLSPL------GIEIPL 213 (380)
T ss_pred HHHHHHHHHHcC----CEEECCCeEEEEEec--CC-eEEEEeCCCEE-EeCEEEEecCcchHHHhhhc------ccCCCc
Confidence 999999888776 688899999999874 33 35677777754 46999999999999998875 556899
Q ss_pred eecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeecc-ccEEeccccc---c----cCCC
Q 011027 320 KPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVI-GNLVLGSSRQ---F----AGFN 391 (495)
Q Consensus 320 ~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~iG~t~~---~----~~~~ 391 (495)
.|.++|+..+............ ..|.+.. ....-.+ +..|..+ +.+++|+... . .+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~------~~p~~~~------~~~~~~~--y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (380)
T TIGR01377 214 QPLRINVCYWREKEPGSYGVSQ------AFPCFLV------LGLNPHI--YGLPSFEYPGLMKVYYHHGQQIDPDERDCP 279 (380)
T ss_pred eEEEEEEEEEecCCccccCccC------CCCEEEE------eCCCCce--EecCCCCCCceEEEEeCCCCccCcccccCC
Confidence 9999998887643221100000 0011100 0000011 2223322 2345543221 1 1122
Q ss_pred ccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHH
Q 011027 392 TEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471 (495)
Q Consensus 392 ~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~ 471 (495)
...+....+.+.+.+.+++|.+..... ..|.|+|++|||+.|+||++|..+|+|+++||+++||+++|.+|++
T Consensus 280 ~~~~~~~~~~l~~~~~~~~P~l~~~~~-------~~~~~~~~~t~D~~piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~ 352 (380)
T TIGR01377 280 FGADIEDVQILRKFVRDHLPGLNGEPK-------KGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKI 352 (380)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCcc-------eeeEEEeccCCCCCeeeecCCCCCCEEEEecCCccceeccHHHHHH
Confidence 346677889999999999999874322 2489999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCccCCcc
Q 011027 472 VADMVLTNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 472 la~~i~g~~~~~~~~~~~p~R~~ 494 (495)
+|++|+++..+.|++.|+|+||.
T Consensus 353 la~li~~~~~~~~~~~f~~~Rf~ 375 (380)
T TIGR01377 353 LAELAMKLKPSYDLAIFSLNRFA 375 (380)
T ss_pred HHHHHhcCCCCCCccccChhhcc
Confidence 99999999889999999999995
No 7
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=9.3e-43 Score=353.72 Aligned_cols=353 Identities=23% Similarity=0.275 Sum_probs=271.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc-CCCCcccCCcceeeeccCCC-----------------C-------
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV-PCSGATGAGQGYIWMVHRTP-----------------G------- 136 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~-~~~gaS~~~~g~i~~~~~~~-----------------~------- 136 (495)
.||+|||||++|+++||+|+ ++|.+|+||||+. ++.++|++++|++.+..... +
T Consensus 2 ~~vvIIGaG~~G~~~A~~La-~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALA-QRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNP 80 (410)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecC
Confidence 58999999999999999998 4899999999996 68999999999987643110 0
Q ss_pred ------------------------chHHHHHHHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHH
Q 011027 137 ------------------------SEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERV 192 (495)
Q Consensus 137 ------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 192 (495)
....++..++.++|+++.+. .+++ +.|.++|.++++.++++.+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~----~~~~~~G~l~~a~~~~~~~~l~~~~ 153 (410)
T PRK12409 81 KPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAER---EGID----FDLERRGILHIYHDKAGFDHAKRVN 153 (410)
T ss_pred CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCc----ceeecCcEEEEECCHHHHHhccHHH
Confidence 01235556677777777654 3333 5688899999999888888888888
Q ss_pred HHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecC
Q 011027 193 KQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS 272 (495)
Q Consensus 193 ~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~ 272 (495)
+.++..|++.++++++++.+++|.+. ....+++++|.+++++|.+++..|.+.+++.| ++++++++|+++..+
T Consensus 154 ~~~~~~g~~~~~l~~~e~~~~~P~l~-~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G----~~i~~~~~V~~i~~~-- 226 (410)
T PRK12409 154 ALLAEGGLERRAVTPEEMRAIEPTLT-GEYYGGYYTPSDSTGDIHKFTTGLAAACARLG----VQFRYGQEVTSIKTD-- 226 (410)
T ss_pred HHHHhcCCCeEEcCHHHHHHhCCCCc-cccceEEEcCCCCccCHHHHHHHHHHHHHhCC----CEEEcCCEEEEEEEe--
Confidence 88888899999999999999999886 34578999999999999999999999998877 689999999999875
Q ss_pred CCcEEEEEcCCC-----eeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCcccccccccccccc
Q 011027 273 TGEVEAVQTSKN-----TLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYV 347 (495)
Q Consensus 273 ~~~~~~v~~~~g-----~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~ 347 (495)
++. +.+.+.++ ..+.+|.||+|+|+|+..|.+.+ +..+|+.|++||++.++........ .
T Consensus 227 ~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~------~~~~~i~p~~g~~~~~~~~~~~~~~--~------ 291 (410)
T PRK12409 227 GGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAML------GDRVNVYPVKGYSITVNLDDEASRA--A------ 291 (410)
T ss_pred CCE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHh------CCCCccccCCceEEEeecCCccccc--c------
Confidence 343 44443221 24567999999999999998865 4567899999998877643211100 0
Q ss_pred ccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCCCccccHHHHHHHHHHHHhhcCCcccccccccccCcee
Q 011027 348 GHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKV 427 (495)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~ 427 (495)
.|.+.. .+... .+.+.+...+.+++|++.+.+..+..++.+..+.+++.+.++||.+....+. .
T Consensus 292 -~p~~~~-----~~~~~---~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~-------~ 355 (410)
T PRK12409 292 -APWVSL-----LDDSA---KIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTRRVV-------P 355 (410)
T ss_pred -CCceee-----eecCC---cEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCCccccc-------e
Confidence 010000 00000 1122122356788899887766666677788999999999999998764431 4
Q ss_pred eeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHHHHHHHhCCCC
Q 011027 428 RIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTNPL 481 (495)
Q Consensus 428 ~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~la~~i~g~~~ 481 (495)
|+|+|++|+|++|+||+.+ .+|+|+++|||++|+++||++|++||++|+++.+
T Consensus 356 w~G~r~~t~D~~PiiG~~~-~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~ 408 (410)
T PRK12409 356 WAGLRPMMPNMMPRVGRGR-RPGVFYNTGHGHLGWTLSAATADLVAQVVAQKLP 408 (410)
T ss_pred ecccCCCCCCCCCeeCCCC-CCCEEEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence 9999999999999999975 6999999999999999999999999999987654
No 8
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=9.1e-43 Score=347.61 Aligned_cols=347 Identities=31% Similarity=0.485 Sum_probs=275.3
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC-CCCchHHHHHHHHHHHHHHHHHHHHhcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR-TPGSEIWDLALRSNKLWKMLADSLRDQG 161 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 161 (495)
||+||||||+|+++|++|++ +|++|+|||++.+++++|+++.|++++... .++....++..++.+.|+++.... +
T Consensus 1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~ 76 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEY---G 76 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred CEEEECcCHHHHHHHHHHHH-CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhc---C
Confidence 79999999999999999984 999999999998899999999999988742 344467889999999999986653 3
Q ss_pred CCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHH
Q 011027 162 LDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVA 241 (495)
Q Consensus 162 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~ 241 (495)
.. ..+..+|.+.+..++.+.+.+++..+.++..++++++++.+++.+.+|.+. +....+++.+.+++++|.++++
T Consensus 77 ~~----~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~i~~~~l~~ 151 (358)
T PF01266_consen 77 IP----VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLN-PRIEGGVFFPEGGVIDPRRLIQ 151 (358)
T ss_dssp SS----CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSS-TTTEEEEEETTEEEEEHHHHHH
T ss_pred cc----cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccc-cchhhhhcccccccccccchhh
Confidence 22 457789999999888888888888888999999999999999999999887 6678899999999999999999
Q ss_pred HHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceee
Q 011027 242 YIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKP 321 (495)
Q Consensus 242 ~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~ 321 (495)
.|.+.+++.| ++++++++|++|..+ ++++.+|.+.+|+ +.+|+||+|+|+|+..|++.+ +.+.++.+
T Consensus 152 ~l~~~~~~~G----v~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~------~~~~~~~~ 218 (358)
T PF01266_consen 152 ALAAEAQRAG----VEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL------GLDLPLRP 218 (358)
T ss_dssp HHHHHHHHTT-----EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT------TTSSTEEE
T ss_pred hhHHHHHHhh----hhccccccccchhhc--ccccccccccccc-cccceeEecccccceeeeecc------cccccccc
Confidence 9999999886 699999999999987 5666669999998 557999999999999988875 44569999
Q ss_pred cceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEeccccc---ccCC-------C
Q 011027 322 RKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQ---FAGF-------N 391 (495)
Q Consensus 322 ~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~---~~~~-------~ 391 (495)
.+|+++.+++..... ...+...... ....... +..|.. +.+++|.+.. .... +
T Consensus 219 ~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~--~~~p~~-g~~~ig~~~~~~~~~~~~~~~~~~~ 281 (358)
T PF01266_consen 219 VRGQVLVLEPPESPL-APAILFPPVI-------------FGPSDGV--YIRPRP-GGVLIGTADGNYDPGPSPEDSSGED 281 (358)
T ss_dssp EEEEEEEEEGCCSGS-SSEEEEEEEC-------------ESSCTEE--EEEEET-TEEEEEESECEEEESSSHHHHSHHH
T ss_pred cceEEEEEccCCccc-cccccccccc-------------ccccccc--eecccc-ccccccccccccccccccccccccc
Confidence 999999998654321 1111100000 0000111 223444 7788883221 1110 1
Q ss_pred ccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHH
Q 011027 392 TEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAEL 471 (495)
Q Consensus 392 ~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~ 471 (495)
.+.+.+ .+.+++.+.+++|.+....+. +.|+|+|++++|+.|++|++|..+|+|+++|++|+||++||++|++
T Consensus 282 ~~~~~~-~~~l~~~~~~~~p~l~~~~v~------~~~~g~r~~t~d~~p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~ 354 (358)
T PF01266_consen 282 PDVDEE-IDELLERLARLLPGLGDAEVV------RSWAGIRPFTPDGRPIIGELPGSPNLYLAGGHGGHGFTLAPGLAEL 354 (358)
T ss_dssp HHHHHH-HHHHHHHHHHHSGGGGGSEEE------EEEEEEEEEETTSECEEEEESSEEEEEEEECETTCHHHHHHHHHHH
T ss_pred ccccHH-HHHhHHHHHHHHHHhhhcccc------ccccceeeeccCCCeeeeecCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 112233 578999999999999776654 2599999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011027 472 VADM 475 (495)
Q Consensus 472 la~~ 475 (495)
+|++
T Consensus 355 ~a~~ 358 (358)
T PF01266_consen 355 LADL 358 (358)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9986
No 9
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=5.7e-42 Score=344.24 Aligned_cols=338 Identities=20% Similarity=0.281 Sum_probs=264.4
Q ss_pred HHHHHHhcCCccEEEEcCC-cCCCCcccCCcceeeeccCCCCchHHHHHH----HHHHHHHHHHHHHHhcCCCCccccce
Q 011027 96 IARQLLVGSDLSVAVVDKV-VPCSGATGAGQGYIWMVHRTPGSEIWDLAL----RSNKLWKMLADSLRDQGLDPLQVIGW 170 (495)
Q Consensus 96 ~A~~La~~~G~~V~liE~~-~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (495)
+||+|+ ++|++|+|||++ .++.|+|+++.|++++....+.....++.. ++.++|+++.+ .+++ +.|
T Consensus 1 ~A~~La-~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~----~~~~----~~~ 71 (381)
T TIGR03197 1 TAYSLA-RRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAE----AGFP----FDH 71 (381)
T ss_pred ChHHHH-hCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHh----cCCC----ccc
Confidence 699998 589999999996 588999999999999876554444555554 45556665532 3433 568
Q ss_pred EeeeeEEEecCHHHHHHHHHHHHHHHHcCCc---eEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHh
Q 011027 171 KQTGSLLIGRTPEELVMLKERVKQLCEAGLR---AEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGN 247 (495)
Q Consensus 171 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~ 247 (495)
.++|.++++.++++.+.+++..+ ..+.+ .++++.+++.+.++. ....+|+++|.+|++||.+++..|.+.+
T Consensus 72 ~~~G~L~~a~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~e~~~~~~~---~~~~gal~~~~~g~idp~~~~~~l~~~~ 145 (381)
T TIGR03197 72 EWCGVLQLAYDEKEAERLQKLLE---QLGFPEELARWVDAEQASQLAGI---PLPYGGLFFPQGGWLSPPQLCRALLAHA 145 (381)
T ss_pred ccCceEEecCChHHHHHHHHHHH---hcCCCHHHheeCCHHHHHHhcCC---CCCCCceEeCCCcccChHHHHHHHHhcc
Confidence 88999999988766665554433 34543 468899999888652 3356889999999999999999999988
Q ss_pred hhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEE
Q 011027 248 RHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLL 327 (495)
Q Consensus 248 ~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~ 327 (495)
++ | ++++++++|++++.+ ++ .|.|++.+|..+.+|.||+|+|+|+..|.+. ..+|+.|+|||++
T Consensus 146 ~~-G----~~i~~~~~V~~i~~~--~~-~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~--------~~~pi~p~rg~~~ 209 (381)
T TIGR03197 146 GI-R----LTLHFNTEITSLERD--GE-GWQLLDANGEVIAASVVVLANGAQAGQLAQT--------AHLPLRPVRGQVS 209 (381)
T ss_pred CC-C----cEEEeCCEEEEEEEc--CC-eEEEEeCCCCEEEcCEEEEcCCccccccccc--------ccCCcccccccee
Confidence 87 6 689999999999874 33 4788888887566799999999999988764 2589999999999
Q ss_pred EEeecCcc-ccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCCCccccHHHHHHHHHHH
Q 011027 328 VLENFNSL-KLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRA 406 (495)
Q Consensus 328 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~l 406 (495)
.+++++.. .++..+.... +..|..+|.+++|++.+..+.+..++.+..+.+++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~------------------------y~~p~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~~ 265 (381)
T TIGR03197 210 HLPATEALSALKTVLCYDG------------------------YLTPANNGEHCIGASYDRNDDDLALREADHAENLERL 265 (381)
T ss_pred eccCCCcccccCceEeCCc------------------------eecccCCCceEeecccCCCCCCCCcCHHHHHHHHHHH
Confidence 98754321 1111111111 2234557889999998776666667788889999999
Q ss_pred HhhcCCcc-----cccccccccCceeeeeeccCCCCCCcEEeecCC-------------------------CCcEEEEec
Q 011027 407 AEFYPKLR-----DLCLADFISNRKVRIGLRPYMPDGKPVIGPVPG-------------------------LSKVFLATG 456 (495)
Q Consensus 407 ~~~~p~l~-----~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~-------------------------~~~l~~~~G 456 (495)
.++||.+. +.++. +.|+|+|++|||++|+||++|+ .+|+|+++|
T Consensus 266 ~~~~P~l~~~~~~~~~~~------~~~~G~r~~t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G 339 (381)
T TIGR03197 266 AECLPALAWASEVDISAL------QGRVGVRCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGG 339 (381)
T ss_pred HHhCcccchhhccCcccc------CceEEEeccCCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEec
Confidence 99999986 33332 3699999999999999999998 899999999
Q ss_pred CCCCChhhhHHHHHHHHHHHhCCCCCCC---CCCCccCCcc
Q 011027 457 HEGLGLSLALGTAELVADMVLTNPLKVD---SAPFAVQGRC 494 (495)
Q Consensus 457 ~g~~G~~~ap~~a~~la~~i~g~~~~~~---~~~~~p~R~~ 494 (495)
|+|+||+++|++|+++|++|++++.+++ ++.|+|+||+
T Consensus 340 ~~g~G~~~ap~~g~~la~~i~~~~~~~~~~~~~~~~~~rf~ 380 (381)
T TIGR03197 340 LGSRGLTSAPLAAEILAAQICGEPLPLERDLLHALHPARFL 380 (381)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhcChhhhc
Confidence 9999999999999999999999998887 4789999996
No 10
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=333.42 Aligned_cols=365 Identities=20% Similarity=0.299 Sum_probs=299.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
.+||+|||||+.|+++||+|| ++|.+ ++++|+....+|+++.++|++|. +..++.....+...+..+|+++.++.
T Consensus 39 ~A~vvViggG~~g~~~~yhla-k~g~k~avlle~~~ltsgttwhtagl~~~-lr~~dv~~qlia~~~~~l~~~leeEt-- 114 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLA-KRGMKGAVLLERSRLTSGTTWHTAGLLWQ-LFPSDVELQLIAHTSRVLYRELEEET-- 114 (856)
T ss_pred cccEEEEcCCchhHHHHHHHH-HccccceEEEeeeeeccccccccccceee-ccCCchhHHHHHHHHHHHHHHHHHhc--
Confidence 689999999999999999999 59998 55666667789999999999998 44555555555666777788887664
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHH
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLA 239 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~ 239 (495)
++. ..|.++|.++++.+....+.+++.+.....+|...+++++++..+++|.++.+...+++|.|.+|.+||..+
T Consensus 115 -gl~----tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~l 189 (856)
T KOG2844|consen 115 -GLH----TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGL 189 (856)
T ss_pred -CCC----cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHH
Confidence 332 669999999999999888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccce
Q 011027 240 VAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPV 319 (495)
Q Consensus 240 ~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l 319 (495)
|++|...|+++| ..++++++|++|... .++.++|.|..|.+.+ .+||+|+|.|+..+-... +.+.|+
T Consensus 190 C~ala~~A~~~G----A~viE~cpV~~i~~~--~~~~~gVeT~~G~iet-~~~VNaaGvWAr~Vg~m~------gvkvPL 256 (856)
T KOG2844|consen 190 CQALARAASALG----ALVIENCPVTGLHVE--TDKFGGVETPHGSIET-ECVVNAAGVWAREVGAMA------GVKVPL 256 (856)
T ss_pred HHHHHHHHHhcC----cEEEecCCcceEEee--cCCccceeccCcceec-ceEEechhHHHHHhhhhc------CCcccc
Confidence 999999999998 589999999999876 4556799999998875 889999999998876654 578999
Q ss_pred eecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccC----------
Q 011027 320 KPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAG---------- 389 (495)
Q Consensus 320 ~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~---------- 389 (495)
.|+..+++++++.++.+..+. |.+ .+.+.++++. ...+.++.|+-. .+.
T Consensus 257 ~p~~H~YvvT~~IeGi~s~t~---------p~i--------rD~DgSvylR---~~~~gil~GGyE-~n~i~~egv~~~~ 315 (856)
T KOG2844|consen 257 VPMHHAYVVTSRIEGVSSLTR---------PNI--------RDLDGSVYLR---QQGDGILFGGYE-SNPIFTEGVPPGF 315 (856)
T ss_pred eeeeeeEEEecccCCccCCCc---------cce--------ecccceEEEE---ecCCceeccccc-cCceeccccCCcc
Confidence 999999999887765432110 111 0111122222 234455666532 111
Q ss_pred --CCccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHH
Q 011027 390 --FNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALG 467 (495)
Q Consensus 390 --~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~ 467 (495)
.-.+++++....+++.+.++.|.|++..+.++ -+|.-.+|||.+|++|+.|...|.|++.|+++.|++++-+
T Consensus 316 ~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~------v~gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG 389 (856)
T KOG2844|consen 316 ATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSL------VNGPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGG 389 (856)
T ss_pred ccccccccHhhhHHHHHHHHHhCchhhhcCccce------ecCccccCCccccccCCCccccceEEeecCCccceeccCc
Confidence 01126778888999999999999998877654 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccCCcc
Q 011027 468 TAELVADMVLTNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 468 ~a~~la~~i~g~~~~~~~~~~~p~R~~ 494 (495)
||++|+++|+.+.+++|+..|++.||.
T Consensus 390 ~Gk~la~wi~~g~p~~d~~~~D~~Rf~ 416 (856)
T KOG2844|consen 390 CGKYLAEWIIHGQPPLDVHELDLRRFG 416 (856)
T ss_pred hhHHHHHHhhcCCCCccchhccHHHhh
Confidence 999999999988889999999999995
No 11
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=340.73 Aligned_cols=370 Identities=29% Similarity=0.405 Sum_probs=283.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCC--chHHHHHHHHHHHHHHHHHHH
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPG--SEIWDLALRSNKLWKMLADSL 157 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 157 (495)
+++||+||||||+|+++||+|+ ++|.+|+|+|++.++.|+|+++++.+...+.... .....+...+..+|+++...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La-~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLA-ERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEEL 81 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHH-HcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHh
Confidence 3689999999999999999998 5999999999998888999999888877665432 234567778888999887765
Q ss_pred HhcCCCCccccceEeeeeEEEecCHH--HHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceec
Q 011027 158 RDQGLDPLQVIGWKQTGSLLIGRTPE--ELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
... ..+..++.+.+...+. +.....+..+.++......+.++..++.+..|.+..+...++++.+.+++++
T Consensus 82 ~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~ 154 (387)
T COG0665 82 GTG-------AGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLD 154 (387)
T ss_pred Ccc-------hhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCC
Confidence 422 2366777777766544 2223334444444444445789999999999999866678899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccc-
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIV- 314 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~- 314 (495)
|.++++.|.+.+++.|. ..+..+++|..+... . +.+.|.|.+|.+ .++.||+|+|+|+..+.+.+ +
T Consensus 155 p~~~~~~l~~~~~~~G~---~~~~~~~~~~~~~~~--~-~~~~v~t~~g~i-~a~~vv~a~G~~~~~l~~~~------~~ 221 (387)
T COG0665 155 PRLLTRALAAAAEELGV---VIIEGGTPVTSLERD--G-RVVGVETDGGTI-EADKVVLAAGAWAGELAATL------GE 221 (387)
T ss_pred HHHHHHHHHHHHHhcCC---eEEEccceEEEEEec--C-cEEEEEeCCccE-EeCEEEEcCchHHHHHHHhc------CC
Confidence 99999999999998762 355668899988764 3 689999999984 46999999999999998875 3
Q ss_pred cccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccC-CCcc
Q 011027 315 LDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAG-FNTE 393 (495)
Q Consensus 315 ~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~-~~~~ 393 (495)
..+++.|++||++.+++.+......... ... ...... .+..|..++.+++|++.+... .+.+
T Consensus 222 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~--~y~~~~~~g~~~~g~~~~~~~~~~~~ 284 (387)
T COG0665 222 LPLPLRPVRGQALTTEPPEGLLADGLAP-VVL--------------VVDDGG--GYIRPRGDGRLRVGGTDEEGGDDPSD 284 (387)
T ss_pred CcCccccccceEEEecCCCccccccccc-eEE--------------EecCCc--eEEEEcCCCcEEEeecccccCCCCcc
Confidence 4578999999999998765321110000 000 001111 133345688999999987752 4433
Q ss_pred ccHHH--HHHHHHHHHhhcCCcccccccccccCceeeeeeccCC-CCCCcEEee-cCCCCcEEEEecCCCCChhhhHHHH
Q 011027 394 VEQTI--IDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYM-PDGKPVIGP-VPGLSKVFLATGHEGLGLSLALGTA 469 (495)
Q Consensus 394 ~~~~~--~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t-~D~~Piig~-~~~~~~l~~~~G~g~~G~~~ap~~a 469 (495)
....+ ...++..+.+++|.+....+.. .|+|.|++| ||++|+||+ .| .+|+|+++||+++|++++|++|
T Consensus 285 ~~~~~~~~~~l~~~~~~~~P~l~~~~~~~------~w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~~~p~~g 357 (387)
T COG0665 285 PEREDLVIAELLRVARALLPGLADAGIEA------AWAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHGFTLAPALG 357 (387)
T ss_pred ccCcchhHHHHHHHHHHhCccccccccce------eeeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcChhhccHHH
Confidence 33333 5789999999999998765532 599999988 999999995 77 9999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCccCCcc
Q 011027 470 ELVADMVLTNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 470 ~~la~~i~g~~~~~~~~~~~p~R~~ 494 (495)
+++|++|.+++.+.+...+.+.||.
T Consensus 358 ~~lA~li~g~~~~~~~~~~~~~~f~ 382 (387)
T COG0665 358 RLLADLILGGEPELDLRPLLLDRFA 382 (387)
T ss_pred HHHHHHHcCCCCCCCcccccccccc
Confidence 9999999999999888777777653
No 12
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=8.6e-41 Score=330.89 Aligned_cols=333 Identities=29% Similarity=0.429 Sum_probs=271.4
Q ss_pred HHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC--CCCchHHHHHHHHHHHHHHHHHHHHh-cCCCCccccceEeee
Q 011027 98 RQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR--TPGSEIWDLALRSNKLWKMLADSLRD-QGLDPLQVIGWKQTG 174 (495)
Q Consensus 98 ~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g 174 (495)
|+|++ +|.+|+|||++.++.|+|++++|++++... +......++..++.++|+++.+.+.+ .+++ +.|+.+|
T Consensus 1 ~~La~-~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~----~~~~~~G 75 (337)
T TIGR02352 1 WELAK-RGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLD----TGYHQCG 75 (337)
T ss_pred ChHHH-CCCceEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCC----cCeEEcc
Confidence 57884 899999999998889999999999977543 13345678889999999998876533 2333 6688999
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHhhhhccCC
Q 011027 175 SLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKG 254 (495)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~ 254 (495)
.+++..++++.+.+++..+..+..+.+.++++++++.+.+|.+. +...+|++.|.+|++||.+++..|.+.+++.|
T Consensus 76 ~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~-~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g--- 151 (337)
T TIGR02352 76 TLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLS-GGIRGAVFYPDDAHVDPRALLKALEKALEKLG--- 151 (337)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCC-cccceEEEcCCCceEChHHHHHHHHHHHHHcC---
Confidence 99999998888889888888888889999999999999999886 45678999999999999999999999998876
Q ss_pred ceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCc
Q 011027 255 RYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNS 334 (495)
Q Consensus 255 ~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~ 334 (495)
++++++++|+++..+ ++.++.|.+.+|.+ .+|.||+|+|+|+..|.+ ++++|++||++.++++..
T Consensus 152 -~~~~~~~~v~~i~~~--~~~~~~v~~~~g~~-~a~~vV~a~G~~~~~l~~-----------~~~~~~~g~~~~~~~~~~ 216 (337)
T TIGR02352 152 -VEIIEHTEVQHIEIR--GEKVTAIVTPSGDV-QADQVVLAAGAWAGELLP-----------LPLRPVRGQPLRLEAPAV 216 (337)
T ss_pred -CEEEccceEEEEEee--CCEEEEEEcCCCEE-ECCEEEEcCChhhhhccc-----------CCccccCceEEEeecccc
Confidence 689999999999875 56677888888854 579999999999998743 579999999999875432
Q ss_pred cccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCCCccccHHHHHHHHHHHHhhcCCcc
Q 011027 335 LKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFNTEVEQTIIDRIWKRAAEFYPKLR 414 (495)
Q Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~~~~~~~~~~~~~~~~l~~~~p~l~ 414 (495)
.....++.. .. .+ . . .+..|..+|++++|++.+.++.+..++.+..+.+++.+.++||.+.
T Consensus 217 ~~~~~~~~~--~~------------~~-~--~--~y~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 277 (337)
T TIGR02352 217 PLLNRPLRA--VV------------YG-R--R--VYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALK 277 (337)
T ss_pred ccCCcccce--EE------------Ec-C--C--EEEEEcCCCeEEEEEeccccCccCCCCHHHHHHHHHHHHHhCCCcc
Confidence 111111100 00 00 0 1 1334556778999998877666667788889999999999999987
Q ss_pred cccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhHHHHHHHHHHHhCC
Q 011027 415 DLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLALGTAELVADMVLTN 479 (495)
Q Consensus 415 ~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap~~a~~la~~i~g~ 479 (495)
..++. +.|+|+|++|+|++|+||++|..+|+|+++||||+||+++|++|+++|++|.++
T Consensus 278 ~~~~~------~~~~g~r~~t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 278 EARLL------ETWAGLRPGTPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILGK 336 (337)
T ss_pred cCcHH------HheecCCCCCCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence 76553 359999999999999999999899999999999999999999999999999975
No 13
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=1.4e-40 Score=332.69 Aligned_cols=349 Identities=23% Similarity=0.312 Sum_probs=257.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQG 161 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 161 (495)
+||+||||||+|+++||+|+ ++|++|+|||++..+.|+|+++.|++++....+ ....++...+.++|+++.+.+ +
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~-~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~---~ 75 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAA-RRGLSVTVIERSSRAQGASVRNFGQVWPTGQAP-GPAWDRARRSREIWLELAAKA---G 75 (365)
T ss_pred CCEEEECCCHHHHHHHHHHH-HCCCeEEEEeCCCCCCCcccccCceEEecCCCC-ccHHHHHHHHHHHHHHHHHHc---C
Confidence 58999999999999999998 489999999999888999999999998644332 245678889999999887654 2
Q ss_pred CCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHH
Q 011027 162 LDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVA 241 (495)
Q Consensus 162 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~ 241 (495)
+.+.++|.+.+..++++.+.+++..+.....+.++++++++++.+.+|.+..+...+++++|.++++||.+++.
T Consensus 76 ------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~ 149 (365)
T TIGR03364 76 ------IWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIP 149 (365)
T ss_pred ------CCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHH
Confidence 34788999999888777777777666666677889999999999999988656668899999999999999999
Q ss_pred HHHHHhhhh-ccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhcccccccccee
Q 011027 242 YIEKGNRHF-ASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVK 320 (495)
Q Consensus 242 ~l~~~~~~~-g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~ 320 (495)
.|.+.+.+. | ++++++++|++|.. + .|.+.+|.+. +|.||+|+|+|+..|++.+ ...+|+.
T Consensus 150 ~l~~~~~~~~G----v~i~~~t~V~~i~~---~----~v~t~~g~i~-a~~VV~A~G~~s~~l~~~~------~~~~~~~ 211 (365)
T TIGR03364 150 ALAAYLAEQHG----VEFHWNTAVTSVET---G----TVRTSRGDVH-ADQVFVCPGADFETLFPEL------FAASGVR 211 (365)
T ss_pred HHHHHHHhcCC----CEEEeCCeEEEEec---C----eEEeCCCcEE-eCEEEECCCCChhhhCcch------hhccCcc
Confidence 999887654 4 68899999999853 2 4777878765 6999999999999988764 3457899
Q ss_pred ecceeEEEEeecCccccccccc-------ccccccccc---C--C-CCCCCcccccceeeeeeeeeeccccEEecccccc
Q 011027 321 PRKGHLLVLENFNSLKLNHASM-------EAGYVGHHD---L--T-LHPGQVNHGQILSISMTATTDVIGNLVLGSSRQF 387 (495)
Q Consensus 321 ~~rgq~~~~~~~~~~~~~~~~~-------~~g~~~~~~---~--~-~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~ 387 (495)
|+|||++.+++.+...+...+. ..+|...|. . . ..+.......... .+..|..+|++++|++.+.
T Consensus 212 p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~g~~~iG~~~~~ 289 (365)
T TIGR03364 212 RCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIH--LMVSQNPDGELIIGDSHEY 289 (365)
T ss_pred eEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeE--EEEEECCCCCEEecCcccc
Confidence 9999999988654322221111 111111000 0 0 0000000011112 2444667889999998876
Q ss_pred cCCCcc-ccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhhH
Q 011027 388 AGFNTE-VEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLAL 466 (495)
Q Consensus 388 ~~~~~~-~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~ap 466 (495)
+..+.. .+.+..+.+.+.+..++ .+.+.++. +.|+|+|++|+|..|+++.. .+|+|+++||+|+||++||
T Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~------~~w~G~r~~t~d~~~v~~~~--~~g~~~a~G~~g~G~~~ap 360 (365)
T TIGR03364 290 GLAPDPFDDEEIDNLILAEAKTIL-GLPDLDIV------ERWQGVYASSPPAPIFLERP--DDGVTVVVVTSGAGMTLSF 360 (365)
T ss_pred cCCCCCcchHHHHHHHHHHHHHhc-CCCCCceE------EEEeEEecCCCCCCceecCC--CCCeEEEEecCCCcccccc
Confidence 433222 23334455666676665 56655553 35999999999999999754 6899999999999999999
Q ss_pred HHHH
Q 011027 467 GTAE 470 (495)
Q Consensus 467 ~~a~ 470 (495)
++|+
T Consensus 361 ~~~~ 364 (365)
T TIGR03364 361 GLAE 364 (365)
T ss_pred cccC
Confidence 9986
No 14
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=1.2e-36 Score=306.70 Aligned_cols=350 Identities=22% Similarity=0.271 Sum_probs=267.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCc-CCCCcccCCcceeeeccCC-CCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVV-PCSGATGAGQGYIWMVHRT-PGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~-~~~gaS~~~~g~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
.+||+||||||+|+++||+|++ + |++|+||||+. ++.++|+++.|++++.... +.....++..++.++|.++.+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~-~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQE-RYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ 80 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHH-hCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999984 7 99999999984 7889999999999886433 3334678888999999988765
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecH
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA 236 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p 236 (495)
+ + +.|.++|.+.+..++++.+.+++..+.++..|.+.++++.+++.+.+|.+. ..+++++|.+|+++|
T Consensus 81 ~---~------~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~---~~~al~~p~~g~vd~ 148 (393)
T PRK11728 81 H---G------IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIR---GLGAIFVPSTGIVDY 148 (393)
T ss_pred c---C------CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCcc---ccceEEcCCceEECH
Confidence 3 2 447889999999988888888888888888899999999999999999775 268999999999999
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccc
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLD 316 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~ 316 (495)
..+++.|.+.+++.| ++++++++|+++..+ ++ .+.|.+.++. +.+|.||+|+|.|+..+.+.+. ....
T Consensus 149 ~~l~~aL~~~~~~~G----v~i~~~~~V~~i~~~--~~-~~~V~~~~g~-i~ad~vV~A~G~~s~~l~~~~g----~~~~ 216 (393)
T PRK11728 149 RAVAEAMAELIQARG----GEIRLGAEVTALDEH--AN-GVVVRTTQGE-YEARTLINCAGLMSDRLAKMAG----LEPD 216 (393)
T ss_pred HHHHHHHHHHHHhCC----CEEEcCCEEEEEEec--CC-eEEEEECCCE-EEeCEEEECCCcchHHHHHHhC----CCCC
Confidence 999999999988876 688999999998764 33 3578887775 4569999999999998887651 1234
Q ss_pred cceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccc----cCCCc
Q 011027 317 IPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQF----AGFNT 392 (495)
Q Consensus 317 ~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~----~~~~~ 392 (495)
.++.|+|||++.++......++..+.. .| + .......+ +..|..+|++++|++... .+++.
T Consensus 217 ~~v~p~rGq~~~~~~~~~~~~~~~v~~-----~p------~--~~~~~~g~--~~~p~~~G~~~~G~~a~~~~~~~~~~~ 281 (393)
T PRK11728 217 FRIVPFRGEYYRLAPEKNQLVNHLIYP-----VP------D--PAFPFLGV--HLTRMIDGSVTVGPNAVLAFKREGYRK 281 (393)
T ss_pred CceEEeeeEEEEeccccccccCCceec-----CC------C--CCCCcceE--EeecCCCCCEEECCCcceehhhcCccc
Confidence 789999999999975432112211110 00 0 00001122 334567899999964321 22222
Q ss_pred c-c---------------------cHHHHHHH---------HHHHHhhcCCcccccccccccCceeeeeecc--CCCCCC
Q 011027 393 E-V---------------------EQTIIDRI---------WKRAAEFYPKLRDLCLADFISNRKVRIGLRP--YMPDGK 439 (495)
Q Consensus 393 ~-~---------------------~~~~~~~~---------~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~--~t~D~~ 439 (495)
. . +.+..+++ ++.+.+++|.|....+.. .|+|+|| +++|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~------~~~G~Rp~~~~~d~~ 355 (393)
T PRK11728 282 RDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQP------YPAGVRAQAVSRDGK 355 (393)
T ss_pred cCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHccc------CCCceeeeeeCCCCC
Confidence 1 1 23344444 588899999998766643 5999999 899998
Q ss_pred cEEeec-CCCCcEEEEecCCCCChhhhHHHHHHHHHHH
Q 011027 440 PVIGPV-PGLSKVFLATGHEGLGLSLALGTAELVADMV 476 (495)
Q Consensus 440 Piig~~-~~~~~l~~~~G~g~~G~~~ap~~a~~la~~i 476 (495)
|+-+.+ ...++.+.+.|.-|-|+|.+|.+|+.+++++
T Consensus 356 ~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 356 LVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred ccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 887763 3348999999999999999999999999864
No 15
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=275.82 Aligned_cols=376 Identities=18% Similarity=0.245 Sum_probs=269.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCC--CCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHH
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPC--SGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~--~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
.+..||+||||||.|++|||+|+ ++|.++.|||+..++ .|+|-...-++++. +++..+..+..++++.|+++...
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLa-K~g~killLeqf~~ph~~GSShg~sRIiR~~--Y~e~~Y~~m~~ea~e~W~~~~~~ 81 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELA-KRGDKILLLEQFPLPHSRGSSHGISRIIRPA--YAEDKYMSMVLEAYEKWRNLPEE 81 (399)
T ss_pred ccceeEEEEcccccchHHHHHHH-hcCCeEEEEeccCCCcccCcccCcceeechh--hhhHHHHHHHHHHHHHHHhChhh
Confidence 34689999999999999999998 599999999998553 34443334455543 34556788889999999987665
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCC-CCccCCcceEEEeCCCceec
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEP-ELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p-~l~~~~~~~~~~~~~~g~~~ 235 (495)
.+. +-.+|...+.....+..++......++..++..+.++.+|+++++| .+..+....|+..+.+|+++
T Consensus 82 ~g~----------~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~ 151 (399)
T KOG2820|consen 82 SGV----------KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVIN 151 (399)
T ss_pred hce----------eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEee
Confidence 432 3446666666666665667777777777888888899999999999 66667778899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhcccccc
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVL 315 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~ 315 (495)
+.+.++.+...++++| +.++.+..|..+...++++....|.|.+|.++.++.+|+++|+|++.|++.. ++.
T Consensus 152 a~kslk~~~~~~~~~G----~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~-----~~~ 222 (399)
T KOG2820|consen 152 AAKSLKALQDKARELG----VIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTS-----LAI 222 (399)
T ss_pred HHHHHHHHHHHHHHcC----eEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcc-----ccc
Confidence 9999999999999988 5788888998887666567788899999998888999999999999999852 145
Q ss_pred ccceeecceeEEEEeecCccccccccccc-cccccccCCCCCCCcccccceeeeeeeeee--ccccEEec--ccc-----
Q 011027 316 DIPVKPRKGHLLVLENFNSLKLNHASMEA-GYVGHHDLTLHPGQVNHGQILSISMTATTD--VIGNLVLG--SSR----- 385 (495)
Q Consensus 316 ~~~l~~~rgq~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~iG--~t~----- 385 (495)
..|+.|++=.+-.++.....+.. +..+ .+..+|..+ +.+.+ .+..|. -.+.+.+- ...
T Consensus 223 ~~Pv~~i~ltvcywk~~~~~~~~--l~~d~~f~~F~~~~-------~~~~~---~ya~p~~eYpg~~k~~yh~g~~v~~~ 290 (399)
T KOG2820|consen 223 GFPVAPIQLTVCYWKTKKNMPVY--LFDDDCFYAFPPYP-------DTKLI---KYALPGYEYPGLMKVDYHEGSKVVPI 290 (399)
T ss_pred CCccceeEeehhhheeecCCcee--ecCCCCceeccCCC-------CcceE---EeccCCCCCcceEEEeecCCCcCCCC
Confidence 67888876444433322111000 1111 111111110 00000 011110 01222221 110
Q ss_pred cccCCCccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhh
Q 011027 386 QFAGFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465 (495)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~a 465 (495)
+.+..........++.....++.++|.+.+..... ..-|++..|||-.++|+.+|+..||+|++|++||||++|
T Consensus 291 ~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~p~~------t~~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~SGHGFK~a 364 (399)
T KOG2820|consen 291 DPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRSPIN------TKMCMYTDTPDANFVIDKHPQYDNVFVGGGGSGHGFKFA 364 (399)
T ss_pred CCCCCcccCcchHHHHHHHHHHHhCccccCCCcce------eeEEEeeCCCCcCeeeecCCCcccEEEecCCCCcceeec
Confidence 00111112334466777777788999998655433 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--CCCCCCCccCCcc
Q 011027 466 LGTAELVADMVLTNPL--KVDSAPFAVQGRC 494 (495)
Q Consensus 466 p~~a~~la~~i~g~~~--~~~~~~~~p~R~~ 494 (495)
|.+|+++|+++.+... -+|...|+-+||-
T Consensus 365 P~iGk~lae~~~~~~~e~~~d~~~f~~~rf~ 395 (399)
T KOG2820|consen 365 PNIGKYLAEMAMGDLSEEWVDAWRFREDRFE 395 (399)
T ss_pred chHHHHHHHHhhhcccccceehhhhhhhhcc
Confidence 9999999999998876 6788999999984
No 16
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.7e-35 Score=308.19 Aligned_cols=341 Identities=23% Similarity=0.265 Sum_probs=254.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCC--CchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTP--GSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
.+||+||||||+|+++|++|+ ++|++|+|||++++++|+|+++.|++++...+. +....++.....++|.++...+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La-~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~- 83 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCA-LRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC- 83 (546)
T ss_pred cccEEEECcCHHHHHHHHHHH-HcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh-
Confidence 589999999999999999998 599999999999999999999999999876543 3233444455555666654432
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
+.++|.+.+..++.+...+.+.++.+...|++.++++++++.+++|.++ +...+++++|+ |++||.+
T Consensus 84 -----------~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~-~~~~ga~~~~d-g~vdp~r 150 (546)
T PRK11101 84 -----------VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVN-PALIGAVKVPD-GTVDPFR 150 (546)
T ss_pred -----------hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcC-ccceEEEEecC-cEECHHH
Confidence 3456667766655555566666677778899999999999999999987 44678899995 7999999
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CC--eeeecCeEEEccCcchHHHHHHhhhcccc
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KN--TLYSKKAIVVAAGCWSGSLMHDLLRETEI 313 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g--~~~~a~~VV~A~G~~s~~l~~~l~~~~~~ 313 (495)
++..+...+.++| ++++++++|+++.++ ++++++|.+. ++ ..+.++.||+|+|+|+..|....
T Consensus 151 l~~al~~~A~~~G----a~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~------ 218 (546)
T PRK11101 151 LTAANMLDAKEHG----AQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA------ 218 (546)
T ss_pred HHHHHHHHHHhCC----CEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc------
Confidence 9999998888877 589999999999875 5667777642 22 34567999999999999998764
Q ss_pred ccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccC----
Q 011027 314 VLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAG---- 389 (495)
Q Consensus 314 ~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~---- 389 (495)
+.+.|+.|.|||++.++.... ...+. ....|. + . . +..| .++.+++|.|.+..+
T Consensus 219 g~~~~i~p~kG~~lv~~~~~~---~~vi~---~~~~~~---------~-~--~---~~vp-~~~~~liGtT~~~~~~~~~ 276 (546)
T PRK11101 219 DLRIRMFPAKGSLLIMDHRIN---NHVIN---RCRKPA---------D-A--D---ILVP-GDTISLIGTTSTRIDYDQI 276 (546)
T ss_pred CCCCceeecceEEEEECCccC---ceeEe---ccCCCC---------C-C--C---EEEe-cCCEEEEeeCCCCccCCCc
Confidence 456899999999999864311 00010 000000 0 0 0 1112 456679999875422
Q ss_pred CCccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCC-CC----------CcEEeec--CCCCcEEEEec
Q 011027 390 FNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMP-DG----------KPVIGPV--PGLSKVFLATG 456 (495)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~-D~----------~Piig~~--~~~~~l~~~~G 456 (495)
.+..++.++.+.+++.+.+++|.+....+. ..|+|+||... +. .++++.. +..+|++.++|
T Consensus 277 ~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~------~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~G 350 (546)
T PRK11101 277 DDNRVTAEEVDILLREGEKLAPVMAKTRIL------RAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITG 350 (546)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCccCEE------EEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEEC
Confidence 235688899999999999999999876654 36999999843 22 3688854 34689999998
Q ss_pred CCCCChhhhHHHHHHHHHHHhCC
Q 011027 457 HEGLGLSLALGTAELVADMVLTN 479 (495)
Q Consensus 457 ~g~~G~~~ap~~a~~la~~i~g~ 479 (495)
|+ +++++++||.++++++..
T Consensus 351 --Gk-ltt~r~~Ae~v~d~v~~~ 370 (546)
T PRK11101 351 --GK-LMTYRLMAEWATDAVCRK 370 (546)
T ss_pred --Ch-HHHHHHHHHHHHHHHHHh
Confidence 33 999999999999999743
No 17
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=257.24 Aligned_cols=378 Identities=21% Similarity=0.252 Sum_probs=274.7
Q ss_pred cccEEEECCCHHHHHHHHHHHh---cCCccEEEEcCCc-CCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV---GSDLSVAVVDKVV-PCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~---~~G~~V~liE~~~-~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
.+||+|||||..|+++||.|.+ +.|++|+|+|+++ ..+.+|.-+-|.+.-.+.-|+ ..++...+.++.+...+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpE--nIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPE--NIQMSLFTAEFLRNAREH 163 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccch--hhhhhhHHHHHHHHHHHh
Confidence 6899999999999999999953 3689999999985 466677778777877766665 346677777777766665
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCc-ceEEEeCCCceec
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGED-SRAAFLPYDSQLD 235 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~-~~~~~~~~~g~~~ 235 (495)
+..... +..++.|.++|.|.++. +++.+.+++..+...+.|...+.++++++.+.+|+++.... .+.+=....||+|
T Consensus 164 l~~~d~-~~vdl~f~P~GyL~LA~-ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfd 241 (509)
T KOG2853|consen 164 LGILDS-EQVDLNFFPTGYLRLAS-EEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFD 241 (509)
T ss_pred hccccC-CCCCcccCCCceEEEcc-hhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccC
Confidence 542111 12346688999999987 66777888877778888999999999999999999986543 3344567789999
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEec--------CCC-------cEE--EEEcCCC--eeeecCeEEEcc
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSN--------STG-------EVE--AVQTSKN--TLYSKKAIVVAA 296 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~--------~~~-------~~~--~v~~~~g--~~~~a~~VV~A~ 296 (495)
|..++..+++.+..+| ..+.+.+|+.++-+. +++ ++. .|...++ +...++.+|+|+
T Consensus 242 pw~LLs~~rrk~~~lG-----v~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 242 PWALLSGIRRKAITLG-----VQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAA 316 (509)
T ss_pred HHHHHHHHHHHhhhhc-----ceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEecc
Confidence 9999999999999887 556788888887541 011 111 1222232 233457899999
Q ss_pred CcchHHHHHHhhhc--c-ccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeee
Q 011027 297 GCWSGSLMHDLLRE--T-EIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATT 373 (495)
Q Consensus 297 G~~s~~l~~~l~~~--~-~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (495)
|+|+..+....... . -+..++|+.|.+.+++.+..+....+++++.- |.. ++ +.+.
T Consensus 317 Ga~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~i-----------------Dps--G~--f~Rr 375 (509)
T KOG2853|consen 317 GAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTI-----------------DPS--GV--FFRR 375 (509)
T ss_pred CccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCceeE-----------------CCC--cc--EEEe
Confidence 99999887754211 1 11346899999999998876643334433320 101 11 2222
Q ss_pred e-ccccEEecccccc----cCCCccccHHHH-HHHHHHHHhhcCCcccccccccccCceeeeeeccC-CCCCCcEEeecC
Q 011027 374 D-VIGNLVLGSSRQF----AGFNTEVEQTII-DRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPY-MPDGKPVIGPVP 446 (495)
Q Consensus 374 ~-~~g~~~iG~t~~~----~~~~~~~~~~~~-~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~-t~D~~Piig~~~ 446 (495)
+ -++.++.|-+... +..+.+++.+.. +.++..|....|.+...++.+ +|+|++.. |-|..++||++|
T Consensus 376 dglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~fetakVqs------aWaGyyD~NtfD~ngViG~HP 449 (509)
T KOG2853|consen 376 DGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETAKVQS------AWAGYYDHNTFDDNGVIGEHP 449 (509)
T ss_pred cCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHhcccccceeeeee------hhcccccccccccCCcccCCc
Confidence 2 2345555554321 122344555554 678888899999987766643 59998887 779999999999
Q ss_pred CCCcEEEEecCCCCChhhhHHHHHHHHHHHh-CCCCCCCCCCCccCCcc
Q 011027 447 GLSKVFLATGHEGLGLSLALGTAELVADMVL-TNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 447 ~~~~l~~~~G~g~~G~~~ap~~a~~la~~i~-g~~~~~~~~~~~p~R~~ 494 (495)
-..|+|+++||+|||+..+|.+|+.++++|+ |....+|+++|+..|+.
T Consensus 450 ~y~Nly~atGFsghGvqqs~avgRAiaElIldG~f~tidLsrf~f~Rlv 498 (509)
T KOG2853|consen 450 LYTNLYMATGFSGHGVQQSPAVGRAIAELILDGAFITIDLSRFDFRRLV 498 (509)
T ss_pred ceeeeeeeecccccchhcchHHHHHHHHHHhcCceeEEeccccchhHHh
Confidence 9999999999999999999999999999998 66788999999999874
No 18
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=260.71 Aligned_cols=358 Identities=22% Similarity=0.232 Sum_probs=280.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCC-cCCCCcccCCcceeeeccC-CCCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKV-VPCSGATGAGQGYIWMVHR-TPGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~-~~~~gaS~~~~g~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
.+||+||||||+|+++|++|+ +.+ ++|+||||. .++.++|++|+|.+|..+. +|.+...++.....+.+.+++++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls-~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELS-EYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHH-HhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999998 477 999999997 6799999999999999975 45556788999999888888887
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCc-eEEcChhhHHHhCCCCccCCcceEEEeCCCceec
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLR-AEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
+. ++|..+|.+.++.++++.+.++++++.+.+.+++ .+.+|++++.++.|.+. ....++++.|.++.+|
T Consensus 82 ~~---------~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~-~~~~aal~~p~~giV~ 151 (429)
T COG0579 82 LG---------IPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLN-EGAVAALLVPSGGIVD 151 (429)
T ss_pred hC---------CcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcccc-ccceeeEEcCCCceEc
Confidence 54 4588899999999999999999999999999998 88999999999999987 4478899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCee-eecCeEEEccCcchHHHHHHhhhccccc
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTL-YSKKAIVVAAGCWSGSLMHDLLRETEIV 314 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~-~~a~~VV~A~G~~s~~l~~~l~~~~~~~ 314 (495)
|..++..|.+.+.+.| +.++++++|++|.+. +++++.+.+.+|+. +.|+.||+|+|.++..|+++.. ..
T Consensus 152 ~~~~t~~l~e~a~~~g----~~i~ln~eV~~i~~~--~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g----~~ 221 (429)
T COG0579 152 PGELTRALAEEAQANG----VELRLNTEVTGIEKQ--SDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG----IP 221 (429)
T ss_pred HHHHHHHHHHHHHHcC----CEEEecCeeeEEEEe--CCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC----CC
Confidence 9999999999999876 699999999999987 33367788888864 6679999999999999999762 22
Q ss_pred cccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEeccccccc----CC
Q 011027 315 LDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFA----GF 390 (495)
Q Consensus 315 ~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~----~~ 390 (495)
......|++|+.+.+++.....++..+... |. +.....++..+ ++-+|.+++|-+.... ..
T Consensus 222 ~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~-----p~--------~~~p~~gV~~~--~~idG~~l~GP~A~~~~~~~k~ 286 (429)
T COG0579 222 EDFKIFPVRGEYLVLDNEVKALLRHKIYPV-----PN--------PGLPGLGVHHT--PTIDGSLLFGPNALDSPKFLKG 286 (429)
T ss_pred cccccCccceEEEEEcccccccccceeecC-----CC--------CCCCCCcceee--cccCCeEEECCCcccchhhhcc
Confidence 336789999999999873322333333211 10 01112233333 4567899999876443 11
Q ss_pred CccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccC-----CCCCCcEEeecCCCCcEEEEecCCCCChhhh
Q 011027 391 NTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPY-----MPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465 (495)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~-----t~D~~Piig~~~~~~~l~~~~G~g~~G~~~a 465 (495)
+...+.+..+.+.......+|.+...... .....|.|++ .++...++-...+.++....+|.=+.|++.+
T Consensus 287 ~~~~~~d~~d~v~~~~~~~~~~~~~~~~~-----~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~ 361 (429)
T COG0579 287 DRGVDFDLLDSVRKANSRGMPDLGIKNNV-----LANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTAD 361 (429)
T ss_pred ccccccchhhhHHHhhhhhcccccccccc-----hhhhheeccccccccccccceecccccCCCCceeeeeEEccccccC
Confidence 23345556677777777888887622221 1247899994 5566666665556789999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 011027 466 LGTAELVADMVLTN 479 (495)
Q Consensus 466 p~~a~~la~~i~g~ 479 (495)
|..++.+.++++..
T Consensus 362 ~a~~~~~~~~~t~~ 375 (429)
T COG0579 362 PAIAGGVLELLTER 375 (429)
T ss_pred hhHhhhHhhhcccc
Confidence 99999999998664
No 19
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.98 E-value=2.5e-30 Score=272.25 Aligned_cols=352 Identities=18% Similarity=0.156 Sum_probs=229.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCch-------HHHHHHHHHHHHHH
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSE-------IWDLALRSNKLWKM 152 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~-------~~~l~~~~~~~~~~ 152 (495)
.++||+||||||+|+++|++|+ ++|++|+|||++++++|+|+++.+++|....+.... ...+..++.+.+..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA-~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~~ 148 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAA-TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERKQ 148 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHH-hCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHHH
Confidence 3589999999999999999999 599999999999999999999999998774432211 12344455544444
Q ss_pred HHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHH---HHHHHHH-HcCC-ceEEcChhhHHHhCCCCccC----Ccc
Q 011027 153 LADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLK---ERVKQLC-EAGL-RAEYLSSSDLLQAEPELMVG----EDS 223 (495)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~---~~~~~~~-~~g~-~~~~~~~~~~~~~~p~l~~~----~~~ 223 (495)
+.+...+. ....+.+.......+...+. ..++.+. ..+. +.++++++++.+++|.+... ...
T Consensus 149 l~~~ap~l---------~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ 219 (627)
T PLN02464 149 LIENAPHL---------CHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLK 219 (627)
T ss_pred HHhhChhh---------ccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCcccccccee
Confidence 43322110 01111111111111111101 1111111 1222 35889999999999999743 244
Q ss_pred eEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCc
Q 011027 224 RAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGC 298 (495)
Q Consensus 224 ~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~ 298 (495)
+++ .+.+|++||.+++..|.+.+++.| +.++.+++|+++..+++++++++|.. .++. .+.+|.||+|+|+
T Consensus 220 ga~-~~~Dg~vdp~rl~~al~~~A~~~G----a~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGa 294 (627)
T PLN02464 220 GTV-VYYDGQMNDSRLNVALACTAALAG----AAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGP 294 (627)
T ss_pred EEE-EecCcEEcHHHHHHHHHHHHHhCC----cEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCH
Confidence 455 566799999999999999999877 58899999999987521356666654 2332 4568999999999
Q ss_pred chHHHHHHhhhccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeecccc
Q 011027 299 WSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGN 378 (495)
Q Consensus 299 ~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 378 (495)
|+..|...+.. ....++.|.+|+++.++..........+.. + ..+++. +++. |. +|.
T Consensus 295 ws~~l~~~~g~----~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~------~--------~~dgr~--~~~~--P~-~g~ 351 (627)
T PLN02464 295 FCDEVRKMADG----KAKPMICPSSGVHIVLPDYYSPEGMGLIVP------K--------TKDGRV--VFML--PW-LGR 351 (627)
T ss_pred hHHHHHHhccC----cCCCceEeeeeEEEecccccCCCCceEEec------C--------CCCCCE--EEEE--ec-CCc
Confidence 99999886521 112349999998888753210000001100 0 001111 1222 33 778
Q ss_pred EEecccccc--cCCCccccHHHHHHHHHHHHhhcC-CcccccccccccCceeeeeeccCCCCCCcEEeecCCC-------
Q 011027 379 LVLGSSRQF--AGFNTEVEQTIIDRIWKRAAEFYP-KLRDLCLADFISNRKVRIGLRPYMPDGKPVIGPVPGL------- 448 (495)
Q Consensus 379 ~~iG~t~~~--~~~~~~~~~~~~~~~~~~l~~~~p-~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~~~~~------- 448 (495)
+++|+|.+. .+.+..++.++.+.+++.++++|| .+....+. ..|+|+||.++|..|.++..+..
T Consensus 352 ~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~------~~waG~RPl~~d~~~~~~~~~sr~~~i~~~ 425 (627)
T PLN02464 352 TVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVL------SAWSGIRPLAVDPSAKSTESISRDHVVCEE 425 (627)
T ss_pred EEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEE------EEEEeEEeeccCCCCCcccccCCceEEEec
Confidence 999988765 334556778999999999999998 56544442 36999999999877765543322
Q ss_pred -CcEEEEecCCCCChhhhHHHHHHHHHHHhC
Q 011027 449 -SKVFLATGHEGLGLSLALGTAELVADMVLT 478 (495)
Q Consensus 449 -~~l~~~~G~g~~G~~~ap~~a~~la~~i~g 478 (495)
+|++-.+| |. ||+.+.+||.+++.++.
T Consensus 426 ~~gli~i~G--Gk-~Tt~R~mAe~~~d~~~~ 453 (627)
T PLN02464 426 PDGLVTITG--GK-WTTYRSMAEDAVDAAIK 453 (627)
T ss_pred CCCeEEEEC--Ch-HHHHHHHHHHHHHHHHH
Confidence 45555554 33 99999999999999875
No 20
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.97 E-value=1.2e-28 Score=256.36 Aligned_cols=325 Identities=23% Similarity=0.289 Sum_probs=243.0
Q ss_pred HHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCCCccccceEeee
Q 011027 97 ARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTG 174 (495)
Q Consensus 97 A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 174 (495)
|+.|+ ++|++|+||||+++++|+|+++.|++|....+ ++....++.....++|.++... .+.++|
T Consensus 1 ArdLa-~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~------------~~~~~g 67 (516)
T TIGR03377 1 MRDLA-LRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH------------CVEDTG 67 (516)
T ss_pred ChhHH-HCCCCEEEEeCCCcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH------------hccCCC
Confidence 67898 59999999999999999999999999987643 3333445555666666666432 156788
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHhhhhccCC
Q 011027 175 SLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKG 254 (495)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~ 254 (495)
.+++..++.+...+.++++.+...|++.++++++++.+++|.++ +...+++++| +|++||.+++..+.+.+.++|
T Consensus 68 ~L~va~~~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~-~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~G--- 142 (516)
T TIGR03377 68 GLFITLPEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLN-PDLIGAVKVP-DGTVDPFRLVAANVLDAQEHG--- 142 (516)
T ss_pred ceEEecCcccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCC-hhheEEEEeC-CcEECHHHHHHHHHHHHHHcC---
Confidence 88888777666677777777788899999999999999999986 4467888888 589999999999999999887
Q ss_pred ceeEEecCceeEEEEecCCCcEEEEEcC---CC--eeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEE
Q 011027 255 RYAEFYHDPVTCLLRSNSTGEVEAVQTS---KN--TLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVL 329 (495)
Q Consensus 255 ~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g--~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~ 329 (495)
+.++++++|+++.++ ++++++|++. +| ..+.++.||+|+|+|+..|...+ +.++|+.|.||+++.+
T Consensus 143 -a~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~------g~~~~i~p~kG~~lv~ 213 (516)
T TIGR03377 143 -ARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA------GLDIRMFPAKGALLIM 213 (516)
T ss_pred -CEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc------CCCCceecceEEEEEE
Confidence 589999999999876 5667766642 34 24567999999999999998865 4578999999999998
Q ss_pred eecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEeccccccc--CCCccccHHHHHHHHHHHH
Q 011027 330 ENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFA--GFNTEVEQTIIDRIWKRAA 407 (495)
Q Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~~~l~ 407 (495)
+.... +..+.. ...+ .+. .+ ..| .++.+++|.|.... ..+..++.++.+.+++.+.
T Consensus 214 ~~~~~---~~~~~~---~~~~---------~~g----~~--~~P-~~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~ 271 (516)
T TIGR03377 214 NHRIN---NTVINR---CRKP---------SDA----DI--LVP-GDTISIIGTTSERIDDPDDLPVTQEEVDVLLREGA 271 (516)
T ss_pred CCccc---cccccc---ccCC---------CCC----cE--EEE-CCCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 64311 111100 0000 010 11 224 45678899887642 2355688899999999999
Q ss_pred hhcCCcccccccccccCceeeeeeccCCCC-----------CCcEEee--cCCCCcEEEEecCCCCChhhhHHHHHHHHH
Q 011027 408 EFYPKLRDLCLADFISNRKVRIGLRPYMPD-----------GKPVIGP--VPGLSKVFLATGHEGLGLSLALGTAELVAD 474 (495)
Q Consensus 408 ~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D-----------~~Piig~--~~~~~~l~~~~G~g~~G~~~ap~~a~~la~ 474 (495)
+++|.+....+. +.|+|+||...+ ...|++. .+..+|++.++| |+ +++++++||.+++
T Consensus 272 ~~~P~l~~~~i~------~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~G--Gk-ltt~r~~Ae~~~d 342 (516)
T TIGR03377 272 KLAPMLAQTRIL------RAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITG--GK-LTTYRLMAEWATD 342 (516)
T ss_pred HhCcccccCCEE------EEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEec--ch-HHHHHHHHHHHHH
Confidence 999998766553 369999997643 1246563 245689999998 33 9999999999999
Q ss_pred HHhCC
Q 011027 475 MVLTN 479 (495)
Q Consensus 475 ~i~g~ 479 (495)
+++..
T Consensus 343 ~~~~~ 347 (516)
T TIGR03377 343 VVCKK 347 (516)
T ss_pred HHHHH
Confidence 99743
No 21
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1e-28 Score=255.81 Aligned_cols=347 Identities=19% Similarity=0.172 Sum_probs=229.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
..+||+||||||+|+++|++|+ ++|++|+||||+++++|+|+++.++++....+......++..++.+.+..+.+....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la-~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAA-GRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHH-hCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 3689999999999999999998 599999999999999999999999998876554433566777777766666543211
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHH--HHHHHHHcC----C-ceEEcChhhHHHhCCCCccCCcceEEEeCCCc
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKE--RVKQLCEAG----L-RAEYLSSSDLLQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~--~~~~~~~~g----~-~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g 232 (495)
. ....+.+ +...+.+...+.. -+..+...+ + +.+.++.+++.+..| +. +. ..+.+.+.++
T Consensus 84 --------l-~~~~~~~-~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l~-~~-~~~a~~~~dg 150 (502)
T PRK13369 84 --------I-IWPMRFV-LPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-LK-PE-YTKGFEYSDC 150 (502)
T ss_pred --------c-ccccceE-EecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-ch-Hh-cCEEEEEcCe
Confidence 0 1222322 2222211111111 011111111 2 255667666655554 32 22 3444666888
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC----eeeecCeEEEccCcchHHHHHHhh
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN----TLYSKKAIVVAAGCWSGSLMHDLL 308 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g----~~~~a~~VV~A~G~~s~~l~~~l~ 308 (495)
++||.+++..+...+++.| +.++.+++|+++.++ ++.|.|.+.++ ..+.++.||+|+|+|+..+.+.+.
T Consensus 151 ~vd~~rl~~~l~~~a~~~G----a~i~~~~~V~~i~~~---~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~ 223 (502)
T PRK13369 151 WVDDARLVVLNALDAAERG----ATILTRTRCVSARRE---GGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVA 223 (502)
T ss_pred eecHHHHHHHHHHHHHHCC----CEEecCcEEEEEEEc---CCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhcc
Confidence 9999999999998888876 589999999999874 33567776543 235679999999999999987531
Q ss_pred hccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEeccccccc
Q 011027 309 RETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFA 388 (495)
Q Consensus 309 ~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~ 388 (495)
. .....++.|.||+++.++..... . ..+.. + ..+++ + ++..|..++..++|.|....
T Consensus 224 g---~~~~~~v~p~kG~~lv~~~~~~~--~-----~~~~~-~--------~~dgr---~-~~i~P~~~~~~liGtTd~~~ 280 (502)
T PRK13369 224 G---SNSSRNVRLVKGSHIVVPKFWDG--A-----QAYLF-Q--------NPDKR---V-IFANPYEGDFTLIGTTDIAY 280 (502)
T ss_pred C---CCCCcceEEeeEEEEEeCCccCC--C-----ceEEE-e--------CCCCe---E-EEEEEecCCEEEEEecCccc
Confidence 0 01124699999999988532110 0 00100 0 00111 1 12234445677889886542
Q ss_pred ---CCCccccHHHHHHHHHHHHhhcC-CcccccccccccCceeeeeeccCCCCCC---------cEEeec--CCCCcEEE
Q 011027 389 ---GFNTEVEQTIIDRIWKRAAEFYP-KLRDLCLADFISNRKVRIGLRPYMPDGK---------PVIGPV--PGLSKVFL 453 (495)
Q Consensus 389 ---~~~~~~~~~~~~~~~~~l~~~~p-~l~~~~~~~~~~~~~~~~g~r~~t~D~~---------Piig~~--~~~~~l~~ 453 (495)
..+..++.++.+.+++.+.++|| .+....+. ..|+|+||.++|+. ..|-.. .+.+|++.
T Consensus 281 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~------~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~ 354 (502)
T PRK13369 281 EGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVV------HSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLS 354 (502)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEE------EEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEE
Confidence 24667899999999999999996 77655443 36999999997542 122211 12378999
Q ss_pred EecCCCCChhhhHHHHHHHHHHHhCC
Q 011027 454 ATGHEGLGLSLALGTAELVADMVLTN 479 (495)
Q Consensus 454 ~~G~g~~G~~~ap~~a~~la~~i~g~ 479 (495)
++| -+||+++.+||.+++.++..
T Consensus 355 i~G---gk~Tt~r~~Ae~v~d~~~~~ 377 (502)
T PRK13369 355 VFG---GKITTFRKLAEHALERLKPF 377 (502)
T ss_pred EeC---ChHhhHHHHHHHHHHHHHHh
Confidence 998 37999999999999998743
No 22
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.97 E-value=5.3e-29 Score=223.33 Aligned_cols=351 Identities=18% Similarity=0.198 Sum_probs=236.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC------ccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD------LSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLA 154 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G------~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (495)
..+|+||||||+|++|||+|++ .+ ..|+|+|+..+++|+||...|++. .+..+. ....|...++.+++++.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~-~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~wc~~s-~~~~La~lsfkLh~~Ls 86 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTE-HPSFKKGELDITIFESKEIAGGASGKASGFLA-KWCQPS-IIQPLATLSFKLHEELS 86 (380)
T ss_pred ceEEEEECCCceeeeeehhhhc-CCccCCCceeEEEEeecccccccccccchhhH-hhhCCc-ccchhhHHHHHHHHHHH
Confidence 4789999999999999999995 55 789999999999999999999886 443332 35678888999999999
Q ss_pred HHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCcee
Q 011027 155 DSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQL 234 (495)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~ 234 (495)
++++-.+ .++|+.-....+..+-+..+ -.+.+...+|+.++.... ...++.. ...+++
T Consensus 87 deydGvn-----nwgYRaltTws~ka~~en~~--------p~k~pegldWi~~e~v~~-~ssiG~t--------~ttaqv 144 (380)
T KOG2852|consen 87 DEYDGVN-----NWGYRALTTWSCKADWENTN--------PAKVPEGLDWIQRERVQK-CSSIGST--------NTTAQV 144 (380)
T ss_pred HhhcCcc-----cccceeeeEEEEEeecccCC--------cccCCcchhhhhhHHhhh-heeccCC--------Ccccee
Confidence 8874322 25566555544433300000 000111133444333222 2222211 235799
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---C-CeeeecCeEEEccCcchHHHHHHhhhc
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---K-NTLYSKKAIVVAAGCWSGSLMHDLLRE 310 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~-g~~~~a~~VV~A~G~~s~~l~~~l~~~ 310 (495)
+|.++|+.++..+++.| +|++.+ ..|.++..+ ..++..+-.. + ......+++|+++|.|+..|++.
T Consensus 145 hP~lFc~~i~sea~k~~---~V~lv~-Gkv~ev~dE--k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~---- 214 (380)
T KOG2852|consen 145 HPYLFCHFILSEAEKRG---GVKLVF-GKVKEVSDE--KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPF---- 214 (380)
T ss_pred CHHHHHHHHHHHHHhhc---CeEEEE-eeeEEeecc--cccccccchhhhcCceEEeeeeEEEEecCCCchhhccc----
Confidence 99999999999999876 356655 457776522 3444333322 2 34445678999999999999875
Q ss_pred cccccccceeecceeEEEEeecCcc-ccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccE-Eeccccccc
Q 011027 311 TEIVLDIPVKPRKGHLLVLENFNSL-KLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNL-VLGSSRQFA 388 (495)
Q Consensus 311 ~~~~~~~~l~~~rgq~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~iG~t~~~~ 388 (495)
.++...|-..+.+++.... .....++...+.+.- ..+.--+++ ..++.+ ++|.+.++.
T Consensus 215 ------~rIsglrihsI~l~~~e~~v~~~avf~~l~~~~g~------------ei~~pe~y~--rkd~Evyicg~~~~e~ 274 (380)
T KOG2852|consen 215 ------TRISGLRIHSITLSPGEKPVGPSAVFCELNTMDGL------------EICKPEEYA--RKDREVYICGETDKEH 274 (380)
T ss_pred ------cccceeeeeeEEecCCCCCCCCceEEEEEEeCCCc------------cccCcceee--cCCceEEEecCCCccc
Confidence 5677777777777765431 122222222222110 111111233 334444 556554432
Q ss_pred -----CCCccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCC-CCcEEeecCCCCcEEEEecCCCCCh
Q 011027 389 -----GFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPD-GKPVIGPVPGLSKVFLATGHEGLGL 462 (495)
Q Consensus 389 -----~~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D-~~Piig~~~~~~~l~~~~G~g~~G~ 462 (495)
..+..++++.++.+.+....+.+.+.+..+.+ ..+|+-|.+.+ +.|+||..+. ++||++||+-+|+
T Consensus 275 ~lPedsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~------~qacfLP~sn~tg~PvIget~s--g~yVaagHscWGI 346 (380)
T KOG2852|consen 275 LLPEDSDDVFVNPEKIIELKEMADLVSSELTKSNVLD------AQACFLPTSNITGIPVIGETKS--GVYVAAGHSCWGI 346 (380)
T ss_pred cCCcccccceeCHHHHHHHHHHHHHhhhhhccchhhh------hhhccccccCCCCCceEeecCC--ceEEeecccccce
Confidence 23456788889999888888888887655432 36899999987 9999999964 9999999999999
Q ss_pred hhhHHHHHHHHHHHh-CCCCCCCCCCCccCCcc
Q 011027 463 SLALGTAELVADMVL-TNPLKVDSAPFAVQGRC 494 (495)
Q Consensus 463 ~~ap~~a~~la~~i~-g~~~~~~~~~~~p~R~~ 494 (495)
+.||+.|+.||++|+ |+..+.++++|+|+|+.
T Consensus 347 tnaPaTG~~mAEllldgeaTSanid~f~p~~~~ 379 (380)
T KOG2852|consen 347 TNAPATGKCMAELLLDGEATSANIDPFDPNLGE 379 (380)
T ss_pred ecCcchhHHHHHHHhccceeeeecCccCccccC
Confidence 999999999999998 56788999999999985
No 23
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=3.9e-28 Score=251.06 Aligned_cols=345 Identities=19% Similarity=0.159 Sum_probs=223.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
..+||+||||||+|+++|++|+ ++|++|+||||+++++|+|+++.+++|....+......++..++.+.++.+.+...+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la-~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~ 83 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAA-GRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHH-HCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999998 599999999999999999999999999887765544567777887766666543221
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHH---H-HHHHHHHHHcCCceEEcChhhHHHhC-----CCCccCCcceEEEeCC
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVM---L-KERVKQLCEAGLRAEYLSSSDLLQAE-----PELMVGEDSRAAFLPY 230 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~---~-~~~~~~~~~~g~~~~~~~~~~~~~~~-----p~l~~~~~~~~~~~~~ 230 (495)
. .++...+........... . ..+++.+.. ...+...+..... |.+. +...++ +.+.
T Consensus 84 ~---------~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~----~~~l~~~~~~~~~~~~~~~~L~-~~l~g~-~~~~ 148 (508)
T PRK12266 84 I---------IWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK----RKSLPGSRGLDLGRDPAGSPLK-PEITRG-FEYS 148 (508)
T ss_pred c---------ccccceEEEecccccchHHHHHHHHHHHhhcC----CCCCChhhhhchhhcccCCCcc-hhhcEE-EEEc
Confidence 1 011111111111000000 0 011111110 1122222222222 4443 233455 5566
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC---C--eeeecCeEEEccCcchHHHHH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK---N--TLYSKKAIVVAAGCWSGSLMH 305 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~---g--~~~~a~~VV~A~G~~s~~l~~ 305 (495)
++++||.+++..+...+.+.| +.++++++|+++..+ + +.|.|.+.+ | ..+.++.||+|+|+|+..+..
T Consensus 149 dg~vd~~rl~~~l~~~A~~~G----a~i~~~~~V~~i~~~--~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 149 DCWVDDARLVVLNARDAAERG----AEILTRTRVVSARRE--N-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred CcccCHHHHHHHHHHHHHHcC----CEEEcCcEEEEEEEe--C-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 779999999999988888876 588999999999874 3 346666543 4 245679999999999999876
Q ss_pred HhhhccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccc
Q 011027 306 DLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSR 385 (495)
Q Consensus 306 ~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~ 385 (495)
.+. +.....++.|.+|+++.++..... . ..+...+ .+++ + +...|..++..++|.|.
T Consensus 222 ~~~---g~~~~~~i~p~kG~~lvl~~~~~~--~-----~~~~~~~---------~dgr---~-v~~~P~~~g~~liGttd 278 (508)
T PRK12266 222 DGL---GLPSPYGIRLVKGSHIVVPRLFDH--D-----QAYILQN---------PDGR---I-VFAIPYEDDFTLIGTTD 278 (508)
T ss_pred hcc---CCCCCcceeeeeeEEEEECCcCCC--C-----cEEEEeC---------CCCC---E-EEEEEeCCCeEEEecCC
Confidence 431 112245899999999987532110 0 0111000 1111 1 12224446788899885
Q ss_pred cc---cCCCccccHHHHHHHHHHHHhhcC-CcccccccccccCceeeeeeccCCCCCCc---------EEeec--CCCCc
Q 011027 386 QF---AGFNTEVEQTIIDRIWKRAAEFYP-KLRDLCLADFISNRKVRIGLRPYMPDGKP---------VIGPV--PGLSK 450 (495)
Q Consensus 386 ~~---~~~~~~~~~~~~~~~~~~l~~~~p-~l~~~~~~~~~~~~~~~~g~r~~t~D~~P---------iig~~--~~~~~ 450 (495)
.. +..+..++.++.+.+++.++++|| .+....+. ..|+|+||.++|+.| +|-.. ...+|
T Consensus 279 ~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii------~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~g 352 (508)
T PRK12266 279 VEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVV------WTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAP 352 (508)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEE------EEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCC
Confidence 43 223556788999999999999996 66654443 369999999998655 33222 22478
Q ss_pred EEEEecCCCCChhhhHHHHHHHHHHHhCC
Q 011027 451 VFLATGHEGLGLSLALGTAELVADMVLTN 479 (495)
Q Consensus 451 l~~~~G~g~~G~~~ap~~a~~la~~i~g~ 479 (495)
++.++|- .||+++.+||.+++.++..
T Consensus 353 li~v~Gg---k~Tt~r~mAe~~~~~~~~~ 378 (508)
T PRK12266 353 LLSVFGG---KITTYRKLAEHALEKLAPY 378 (508)
T ss_pred eEEEEcC---hHHHHHHHHHHHHHHHHHh
Confidence 9999983 5999999999999998743
No 24
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.96 E-value=5.1e-27 Score=239.12 Aligned_cols=364 Identities=16% Similarity=0.158 Sum_probs=246.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCCc-CCCCcc--cCCcceeeeccCC-C-CchHHHHHHHHHHHHHHH
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKVV-PCSGAT--GAGQGYIWMVHRT-P-GSEIWDLALRSNKLWKML 153 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~~-~~~gaS--~~~~g~i~~~~~~-~-~~~~~~l~~~~~~~~~~~ 153 (495)
..+||+||||||+|+++||+|++..+ ++|+||||.. ++.++| +++++.++..... . .....++..++.++|+++
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~~ 123 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRNY 123 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999985333 7999999974 555555 4566666544321 1 123566677788888888
Q ss_pred HHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCcc-------CCcceEE
Q 011027 154 ADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMV-------GEDSRAA 226 (495)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~-------~~~~~~~ 226 (495)
+..+.....+ ..+.++|.+.++.++++.+.+++.++.+++.+.++++++++++.+.+|.+.. +...+++
T Consensus 124 ~~~L~~~~~~----~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al 199 (497)
T PTZ00383 124 LTKLPPSERD----SIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAAL 199 (497)
T ss_pred HHHhcccccc----cceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEE
Confidence 7776543221 3467899999999999999999888888877778999999999999998752 3356899
Q ss_pred EeCCC-ceecHHHHHHHHHHHhhh----hccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 227 FLPYD-SQLDAMLAVAYIEKGNRH----FASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 227 ~~~~~-g~~~p~~~~~~l~~~~~~----~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+.|++ +.+||.++++.|.+.+++ .| +++.++++++|++|.++ ++.+|.|.|.+|.+ .+|.||+|+|+|+.
T Consensus 200 ~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G--~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G~i-~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 200 YVPNELTTVDYQKLSESFVKHARRDALVPG--KKISINLNTEVLNIERS--NDSLYKIHTNRGEI-RARFVVVSACGYSL 274 (497)
T ss_pred EeCCCCEEECHHHHHHHHHHHHHhhhhhcC--CCEEEEeCCEEEEEEec--CCCeEEEEECCCEE-EeCEEEECcChhHH
Confidence 99987 689999999999999887 65 23678999999999875 45678899988865 46999999999999
Q ss_pred HHHHHhhhccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEe
Q 011027 302 SLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVL 381 (495)
Q Consensus 302 ~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 381 (495)
.|++.+ +++.+.++.|++|+.+.++. ..+..++..--...|+... +..+..-.++.+++
T Consensus 275 ~La~~~----Gi~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~~p~~Pf~~v-------------H~d~~i~~~g~~~~ 333 (497)
T PTZ00383 275 LFAQKM----GYGLEYSCLPVAGSFYFSGN----ILNGKVYTVQNPALPFAAV-------------HGDPDIIAKGKTRF 333 (497)
T ss_pred HHHHHh----CCCCCCCEEecCceEEEcCh----hhcCceecCCCCCCCCcCc-------------cCCCccCCCCeEEE
Confidence 998875 23457889999999887652 2232232211111222211 11111112455667
Q ss_pred cccccc------c------------CCCcc--------c-cHHH----------------HHHHHHHHHhhcCCcccccc
Q 011027 382 GSSRQF------A------------GFNTE--------V-EQTI----------------IDRIWKRAAEFYPKLRDLCL 418 (495)
Q Consensus 382 G~t~~~------~------------~~~~~--------~-~~~~----------------~~~~~~~l~~~~p~l~~~~~ 418 (495)
|.+..+ . ..+.. . +... ....++.+++++|.+....+
T Consensus 334 GP~A~~~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~P~~~~~d~ 413 (497)
T PTZ00383 334 GPTALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDL 413 (497)
T ss_pred ccCcccchHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHe
Confidence 665421 0 01110 0 0001 12233456677888764433
Q ss_pred cccccCceeeeeeccCCC---CCCcEEee--cCCCCcEEEEecCCCCChhhhHHHHHHHHHHHhC
Q 011027 419 ADFISNRKVRIGLRPYMP---DGKPVIGP--VPGLSKVFLATGHEGLGLSLALGTAELVADMVLT 478 (495)
Q Consensus 419 ~~~~~~~~~~~g~r~~t~---D~~Piig~--~~~~~~l~~~~G~g~~G~~~ap~~a~~la~~i~g 478 (495)
... .+..|+|+.-- ++..++|. +...+|++.+.|- |-|-+++..-|+.=+..||.
T Consensus 414 ~~~----~~~~GvR~Q~i~~~~~~L~~g~~~i~~~~~~i~~~~~-spgast~l~~~~~d~~~~~~ 473 (497)
T PTZ00383 414 RYC----VGYGGVRPQLIDKVSKKLLLGEGKIDPGKGIIFNITP-SPGATTCLGNAESDMREICE 473 (497)
T ss_pred eec----cCCCceEEEEEECCCCeEecCceEEecCCCcEEeccC-CCcHHHHHHHHHHHHHHHHH
Confidence 211 13569999843 33445564 3345676667664 79999999988877777764
No 25
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.96 E-value=1.5e-26 Score=234.64 Aligned_cols=366 Identities=19% Similarity=0.164 Sum_probs=235.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcC-CcCCCCcccC-------CcceeeeccCCCCch-HHHHH------
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDK-VVPCSGATGA-------GQGYIWMVHRTPGSE-IWDLA------ 143 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~-~~~~~gaS~~-------~~g~i~~~~~~~~~~-~~~l~------ 143 (495)
.+||+||||||+|+++|+.|++ . |++|+|+|| +.++.++|++ ++|.+...+..+..+ ...+.
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~-~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i~ 84 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKE-LDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEIN 84 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHh-CCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHHH
Confidence 6799999999999999999985 5 899999999 7888999976 666665555443200 11222
Q ss_pred ---HHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCC--ceEEc-ChhhHHHhCCCC
Q 011027 144 ---LRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGL--RAEYL-SSSDLLQAEPEL 217 (495)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~p~l 217 (495)
..+.++|..+.+. +.-....-.+.+++.+.+...+++.+.+++.++.+++.++ .++++ +++++.+.+|.+
T Consensus 85 ~~~~~s~~f~~~~~~~----~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l 160 (497)
T PRK13339 85 EQFEISKQFWGHLVKS----GTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLM 160 (497)
T ss_pred HHHHHHHHHHHhhhhh----cCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcc
Confidence 4566666655431 1100000126678999999888889999999999999888 78999 899999999988
Q ss_pred ccC----CcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCCe--eee
Q 011027 218 MVG----EDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKNT--LYS 288 (495)
Q Consensus 218 ~~~----~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g~--~~~ 288 (495)
..+ ...+++|+|.++.+|+..+++.|.+.+.+.+ +++++++++|+++.+. ++..|.+. +.++. .+.
T Consensus 161 ~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~---Gv~i~~~~~V~~I~~~--~d~~w~v~v~~t~~g~~~~i~ 235 (497)
T PRK13339 161 MPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHP---NAQVKYNHEVVDLERL--SDGGWEVTVKDRNTGEKREQV 235 (497)
T ss_pred cCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCC---CcEEEeCCEEEEEEEC--CCCCEEEEEEecCCCceEEEE
Confidence 643 4578999999999999999999998886432 1689999999999875 23346665 44452 456
Q ss_pred cCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCcccccc--ccccccccccccCCCCCCCccccccee
Q 011027 289 KKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNH--ASMEAGYVGHHDLTLHPGQVNHGQILS 366 (495)
Q Consensus 289 a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 366 (495)
+|+||+|+|+|+..|++.+.... ....++.|++||++.++++... ..+ .++...-...|.+.. | +.|.+
T Consensus 236 Ad~VV~AAGawS~~La~~~Gi~~--~~~~~i~PvkGq~l~l~~~~~v-~~h~~~VY~v~~~~~P~~~V-P--hlDtr--- 306 (497)
T PRK13339 236 ADYVFIGAGGGAIPLLQKSGIPE--SKHLGGFPISGQFLRCTNPEVV-KQHQAKVYSKEPVGTPPMTV-P--HLDTR--- 306 (497)
T ss_pred cCEEEECCCcchHHHHHHcCCCc--cCCCceEeeeEEEEEecCHHHh-hhcCceEeCCCCCCCCCCcC-C--CCCCc---
Confidence 89999999999999988752100 0126899999999999863221 111 122211111111111 0 00000
Q ss_pred eeeeeeeecccc--EEeccccccc----------------CC-Ccc-------cc----HH-------HHHHHHHHHHhh
Q 011027 367 ISMTATTDVIGN--LVLGSSRQFA----------------GF-NTE-------VE----QT-------IIDRIWKRAAEF 409 (495)
Q Consensus 367 ~~~~~~~~~~g~--~~iG~t~~~~----------------~~-~~~-------~~----~~-------~~~~~~~~l~~~ 409 (495)
.-+|. +.+|-+..+. .+ +.. .+ .. .....++.++++
T Consensus 307 -------~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~ 379 (497)
T PRK13339 307 -------YIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTF 379 (497)
T ss_pred -------EEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 11222 4444432211 00 000 00 00 012345667788
Q ss_pred cCCcccccccccccCceeeeeeccCC--CCCCcEEee-------cCCCCc-EEEEecCCCCChhhhHHHHHHHHHHHhCC
Q 011027 410 YPKLRDLCLADFISNRKVRIGLRPYM--PDGKPVIGP-------VPGLSK-VFLATGHEGLGLSLALGTAELVADMVLTN 479 (495)
Q Consensus 410 ~p~l~~~~~~~~~~~~~~~~g~r~~t--~D~~Piig~-------~~~~~~-l~~~~G~g~~G~~~ap~~a~~la~~i~g~ 479 (495)
+|.+....+. ...+|+|+.- +|+..+.+. +...++ +.++.| -|-|.+.+..+|+.+++.+..+
T Consensus 380 ~P~~~~~D~~------~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna-~SPgATssl~ia~~v~~~~f~~ 452 (497)
T PRK13339 380 YPEARAEDWR------LYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLG-ESPGASTSVSVALEVLERNFPE 452 (497)
T ss_pred CCCCCHHHee------EcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecC-CCcHHHhhHHHHHHHHHHHhHH
Confidence 8987654332 2478999984 455332222 223456 555666 4899999999999999887543
No 26
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=3.9e-26 Score=228.37 Aligned_cols=348 Identities=22% Similarity=0.232 Sum_probs=236.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
..+||+||||||.|+.+|+.+| .+|++|+|+|++++++|+|+++.+++|.+..+.......+..++...-+-+.+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA-~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~AP- 88 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAA-GRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAP- 88 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHH-hCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCc-
Confidence 3799999999999999999998 69999999999999999999999999999988776666777766544333332211
Q ss_pred cCCCCccccceEeeeeEEEecC-HHHHHHHHHHHHHHH-HcCC-----ceEEcChhhHHHhCCCCccCCcceEEEeCCCc
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRT-PEELVMLKERVKQLC-EAGL-----RAEYLSSSDLLQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~-~~g~-----~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g 232 (495)
+ ...+.+.+....+ ..+.-.+..-+.... ..|+ ..+.++.++...+.|.++.+...++++++ ++
T Consensus 89 H--------~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~-D~ 159 (532)
T COG0578 89 H--------LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYP-DG 159 (532)
T ss_pred c--------ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEc-cc
Confidence 1 1233333333333 111111221111111 1232 46778888999999999855555566555 67
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC---C--eeeecCeEEEccCcchHHHHHHh
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK---N--TLYSKKAIVVAAGCWSGSLMHDL 307 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~---g--~~~~a~~VV~A~G~~s~~l~~~l 307 (495)
++|+.+++-.....+.+.| .+++..++|+++.++ ++ +|+|...| | ..+.++.||||||+|+..+++..
T Consensus 160 ~vddaRLv~~~a~~A~~~G----a~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 160 VVDDARLVAANARDAAEHG----AEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred eechHHHHHHHHHHHHhcc----cchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 9999999888888888887 388899999999986 45 89998654 3 24567999999999999998875
Q ss_pred hhccccccc--cceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccc
Q 011027 308 LRETEIVLD--IPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSR 385 (495)
Q Consensus 308 ~~~~~~~~~--~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~ 385 (495)
.. ... ..++|.+|.++.++.. ...+. +|+... . .+-++.+. .+..+..+||.|.
T Consensus 233 ~~----~~~~~~~vr~skGsHlVv~~~--~~~~~-----a~~~~~---------~--~d~r~~f~--iP~~~~~liGTTD 288 (532)
T COG0578 233 GL----EQSPHIGVRPSKGSHLVVDKK--FPINQ-----AVINRC---------R--KDGRIVFA--IPYEGKTLIGTTD 288 (532)
T ss_pred cc----cCCCCccceeccceEEEeccc--CCCCc-----eEEeec---------C--CCCceEEE--ecCCCCEEeeccc
Confidence 21 111 4699999999999861 11111 111100 0 01111222 2345677999987
Q ss_pred ccc---CCCccccHHHHHHHHHHHHh-hcCCcccccccccccCceeeeeeccCCCCCCcEEee---------cCCCCcEE
Q 011027 386 QFA---GFNTEVEQTIIDRIWKRAAE-FYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGP---------VPGLSKVF 452 (495)
Q Consensus 386 ~~~---~~~~~~~~~~~~~~~~~l~~-~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~---------~~~~~~l~ 452 (495)
... ..+..+++++.+.+++.++. +-|.+....+ +..|+|+||.-.|..+--.. ..+..|++
T Consensus 289 ~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI------~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~gll 362 (532)
T COG0578 289 TDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDI------LSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLL 362 (532)
T ss_pred cccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhhe------eeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeE
Confidence 542 34566899999999999993 3355544433 24799999998765542111 11236888
Q ss_pred EEecCCCCChhhhHHHHHHHHHHHhC
Q 011027 453 LATGHEGLGLSLALGTAELVADMVLT 478 (495)
Q Consensus 453 ~~~G~g~~G~~~ap~~a~~la~~i~g 478 (495)
..+|- =+|+.-.+||.+++.++.
T Consensus 363 tv~GG---KlTTyR~maE~a~d~v~~ 385 (532)
T COG0578 363 TVAGG---KLTTYRKMAEDALDAVCE 385 (532)
T ss_pred EEecc---hhHHhHHHHHHHHHHHHH
Confidence 88874 688888899999999873
No 27
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.95 E-value=1.2e-25 Score=229.85 Aligned_cols=238 Identities=18% Similarity=0.167 Sum_probs=174.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCC-cCCCCccc--CCcceeeecc---C-CCCch--HHH---------H
Q 011027 82 FDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKV-VPCSGATG--AGQGYIWMVH---R-TPGSE--IWD---------L 142 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~-~~~~gaS~--~~~g~i~~~~---~-~~~~~--~~~---------l 142 (495)
+||+||||||+|+++|++|++. +|++|+|+||. .++.++|+ +|+|.++... . .+... ... .
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 5899999999999999999852 49999999996 57888888 5777666554 1 22111 111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccc-eEeeeeEEEecCHHHHHHHHHHHHHHHHcCC--ceEE-cChhhHHHhCCCCc
Q 011027 143 ALRSNKLWKMLADSLRDQGLDPLQVIG-WKQTGSLLIGRTPEELVMLKERVKQLCEAGL--RAEY-LSSSDLLQAEPELM 218 (495)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~p~l~ 218 (495)
...+.++|.++.+ .++... +.. +.++|.+.++.++++.+.+++.++.+++.++ .+++ ++++++.+.+|.+.
T Consensus 81 ~~~s~~~~~~l~~----~g~~~~-~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~ 155 (483)
T TIGR01320 81 FQVSRQFWAHLVE----EGILTD-PKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMA 155 (483)
T ss_pred HHHHHHHHHHHHH----cCCCCC-hhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcc
Confidence 2345556655543 232100 012 3359999999999999999999888888887 4665 79999999999886
Q ss_pred cC----CcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCC--eeeec
Q 011027 219 VG----EDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKN--TLYSK 289 (495)
Q Consensus 219 ~~----~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g--~~~~a 289 (495)
.. ...+++|+|+++++||.++++.|.+.+++.| ++++++++|+++.++ ++..|.+.+ .+| ..+.+
T Consensus 156 ~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~G----v~i~~~t~V~~i~~~--~~~~v~v~~~~~~~g~~~~i~A 229 (483)
T TIGR01320 156 AGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNG----TTIRFGHEVRNLKRQ--SDGSWTVTVKNTRTGGKRTLNT 229 (483)
T ss_pred cCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCC----CEEEeCCEEEEEEEc--CCCeEEEEEeeccCCceEEEEC
Confidence 32 3568999999999999999999999998876 699999999999875 223355543 333 24678
Q ss_pred CeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeec
Q 011027 290 KAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENF 332 (495)
Q Consensus 290 ~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~ 332 (495)
|+||+|+|+|+..|.+.+.... ....++.|++||++.++.+
T Consensus 230 ~~VV~AAG~~s~~La~~~Gi~~--~~~~~i~P~~Gq~l~l~~~ 270 (483)
T TIGR01320 230 RFVFVGAGGGALPLLQKSGIPE--VKGFAGFPVSGLFLRCGNP 270 (483)
T ss_pred CEEEECCCcchHHHHHHcCCCc--CCCCceeeeeEEEEEeCCH
Confidence 9999999999999988752100 0235789999999998754
No 28
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=210.02 Aligned_cols=392 Identities=20% Similarity=0.230 Sum_probs=272.4
Q ss_pred ecCCCCCcccc--cccc-CCCCCcCCCCCCCCCCCCCCCCCCCcccEEEECCCHHHHHHHHHHHh-cCCccEEEEcCC-c
Q 011027 41 SSFFGKKPLSL--SVNK-TRPGRALGPTGYSRLNPITASSRCHTFDVIIIGAGIIGLTIARQLLV-GSDLSVAVVDKV-V 115 (495)
Q Consensus 41 ~~g~g~kr~~l--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGiaGls~A~~La~-~~G~~V~liE~~-~ 115 (495)
+|..|+||..| ++.+ .|.-...+.+-.. ..+......+|++||||||.|+++|++|.- +.+.+|.|+|+. .
T Consensus 9 ~~~~Gr~~~~l~~g~~~p~~~~~t~~R~i~g----g~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 9 VPCLGRKRMLLSTGNLGPTWNLITIKRGISG----GAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred hhhhhhhhhhhccCCCCCCccccceeccccC----CccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 56788888877 4433 4422111111110 111112347999999999999999999974 249999999997 6
Q ss_pred CCCCcccCCcceeeeccC-CCCchHHHHHHHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHH
Q 011027 116 PCSGATGAGQGYIWMVHR-TPGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQ 194 (495)
Q Consensus 116 ~~~gaS~~~~g~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 194 (495)
.+.-.|++|.|.+|..+. .|.+...+|+.+..++..+++++ .+ ++++.+|.|.++...++..+++..++.
T Consensus 85 la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e---~~------IpyKk~GKLIVAt~~~EiprLd~L~~~ 155 (453)
T KOG2665|consen 85 LAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE---KK------IPYKKTGKLIVATESEEIPRLDALMHR 155 (453)
T ss_pred hceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh---cC------CChhhcceEEEEeChhhcchHHHHHHh
Confidence 688889999999998865 56677789999998887776654 33 569999999999999999999988888
Q ss_pred HHHcCCc-eEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCC
Q 011027 195 LCEAGLR-AEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNST 273 (495)
Q Consensus 195 ~~~~g~~-~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~ 273 (495)
..+.+++ .++++..++.+++|... ...+++.|+.|.+|...+...+.+..+.+| ..+++|-++..+..+.+.
T Consensus 156 g~qN~v~glrmieg~ei~~~EP~cr---gvkAl~sPhtGIvD~~~v~ls~~edF~~~g----g~i~~n~~l~g~~~n~~~ 228 (453)
T KOG2665|consen 156 GTQNGVPGLRMIEGSEIMEMEPYCR---GVKALLSPHTGIVDWGSVTLSFGEDFDFMG----GRIYTNFRLQGIAQNKEA 228 (453)
T ss_pred hhhcCCCCeeeeccchhhhcChhhh---hhhhhcCCCcceeehHHHHHHHHHHHHHhc----ccccccceeccchhccCC
Confidence 7778886 89999999999998653 356799999999999999999998888887 478889999998765321
Q ss_pred --CcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCcccccccccccccccccc
Q 011027 274 --GEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHD 351 (495)
Q Consensus 274 --~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (495)
+.-..|....++.+..+.||-|+|..++++.... ++..+..+.|.||..+.+.+....-++..+...-+..+|+
T Consensus 229 ~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~s----gc~~dPriVpfrG~ylll~~ek~h~vk~niyPvpd~RFpf 304 (453)
T KOG2665|consen 229 TFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALS----GCELDPRIVPFRGEYLLLKPEKLHLVKGNIYPVPDPRFPF 304 (453)
T ss_pred CCCCceEEecCccceeEEeEEEEeccccHhHHHHHh----CCCCCCeeeeccchhhhcChHHhccccCceeeCCCCCCcc
Confidence 1112343334666666889999999998886653 2234456889999988887654333444343322222222
Q ss_pred CCCCCCCcccccceeeeeeeeeeccccEEecccccc--------------c-----------------CCCccccHHH--
Q 011027 352 LTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQF--------------A-----------------GFNTEVEQTI-- 398 (495)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~--------------~-----------------~~~~~~~~~~-- 398 (495)
+ + +.++|..++.+++|..... . .++..+++..
T Consensus 305 l-------------G--vhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~ 369 (453)
T KOG2665|consen 305 L-------------G--VHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKE 369 (453)
T ss_pred c-------------c--ccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhh
Confidence 2 2 2333555666777653210 0 1122233333
Q ss_pred --HHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCC------cEEee--cCCCCcEEEEecCCCCChhhhHHH
Q 011027 399 --IDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGK------PVIGP--VPGLSKVFLATGHEGLGLSLALGT 468 (495)
Q Consensus 399 --~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~------Piig~--~~~~~~l~~~~G~g~~G~~~ap~~ 468 (495)
.......+++++|++....++ .+.+|+|+..-|+. +++.. -.-.|++..+-+--|-|.+.+..+
T Consensus 370 ~f~~aqvk~lqkyiPdlk~~di~------rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAI 443 (453)
T KOG2665|consen 370 KFIAAQVKELQKYIPDLKDSDIE------RGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAI 443 (453)
T ss_pred hhhhhhhHHHHHhCccccccccc------cCcccccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHHH
Confidence 334448899999999876654 36889997654332 22211 112588999999999999999999
Q ss_pred HHHHHHHHh
Q 011027 469 AELVADMVL 477 (495)
Q Consensus 469 a~~la~~i~ 477 (495)
|+++|+.+.
T Consensus 444 a~mIa~k~~ 452 (453)
T KOG2665|consen 444 AKMIADKFL 452 (453)
T ss_pred HHHHHHHhc
Confidence 999998764
No 29
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.95 E-value=2.1e-25 Score=228.34 Aligned_cols=368 Identities=18% Similarity=0.200 Sum_probs=235.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCc-CCCCccc--CCcceeeecc----CCC----CchHHHHH-----
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVV-PCSGATG--AGQGYIWMVH----RTP----GSEIWDLA----- 143 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~-~~~gaS~--~~~g~i~~~~----~~~----~~~~~~l~----- 143 (495)
.+||+||||||+|+++||+|++. .|++|+||||.. ++.++|+ +|+|.++... ..+ .....+++
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~~~ 84 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKINE 84 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHHHH
Confidence 58999999999999999999852 589999999974 5677776 6777665542 222 12222222
Q ss_pred --HHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCC--ceEE-cChhhHHHhCCCCc
Q 011027 144 --LRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGL--RAEY-LSSSDLLQAEPELM 218 (495)
Q Consensus 144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~p~l~ 218 (495)
..+.++|..+.+ .++.....-.+.++|.+.+..++++.+.+++.++.+++.|+ .+++ ++++++.+.+|.+.
T Consensus 85 ~~~~s~~~~~~l~~----~g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~ 160 (494)
T PRK05257 85 QFQISRQFWAYLVE----KGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMM 160 (494)
T ss_pred HHHHHHHHHHHHHH----cCCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccc
Confidence 345556654433 33210000113688999999999989999988888888886 4677 49999999999884
Q ss_pred c----CCcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeec
Q 011027 219 V----GEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSK 289 (495)
Q Consensus 219 ~----~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a 289 (495)
. +...+++|+|.++.+||..+++.|.+.+++.| +++++++++|+++.+++ ++ .|.|.+ .+|. .+.+
T Consensus 161 ~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~G---gv~i~~~teV~~I~~~~-dg-~~~v~~~~~~~G~~~~i~A 235 (494)
T PRK05257 161 EGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQG---NFELQLGHEVRDIKRND-DG-SWTVTVKDLKTGEKRTVRA 235 (494)
T ss_pred cCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCC---CeEEEeCCEEEEEEECC-CC-CEEEEEEEcCCCceEEEEc
Confidence 2 34678999999999999999999999888764 26899999999998752 33 355553 3353 4668
Q ss_pred CeEEEccCcchHHHHHHhhhccccccccceeecceeEEEEeecCccccccc--cccccccccccCCCCCCCcccccceee
Q 011027 290 KAIVVAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHA--SMEAGYVGHHDLTLHPGQVNHGQILSI 367 (495)
Q Consensus 290 ~~VV~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 367 (495)
++||+|+|+|+..|++.+... .....++.|++||++.++++... .++. ++...-...|.+.. | +.|.+
T Consensus 236 ~~VVvaAGg~s~~L~~~~Gi~--~~~~~~i~PvrGq~l~~~~~~~v-~~~~~kvY~~~~~~~P~~~v-P--h~dtr---- 305 (494)
T PRK05257 236 KFVFIGAGGGALPLLQKSGIP--EAKGYGGFPVSGQFLVCENPEVV-AQHHAKVYGKASVGAPPMSV-P--HLDTR---- 305 (494)
T ss_pred CEEEECCCcchHHHHHHcCCC--ccCCCCeeeeeEEEEEcCCHHHH-hcCCeEEecCCCCCCCCCCC-C--CCCCc----
Confidence 999999999999998865110 00135799999999999754221 1111 33222111222221 0 00100
Q ss_pred eeeeeeeccc--cEEeccccccc------C----------CCc----c---c-cH----H-------HHHHHHHHHHhhc
Q 011027 368 SMTATTDVIG--NLVLGSSRQFA------G----------FNT----E---V-EQ----T-------IIDRIWKRAAEFY 410 (495)
Q Consensus 368 ~~~~~~~~~g--~~~iG~t~~~~------~----------~~~----~---~-~~----~-------~~~~~~~~l~~~~ 410 (495)
.-+| .+.+|-+..+. . ++. . . +. . .....++.+++++
T Consensus 306 ------~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 379 (494)
T PRK05257 306 ------VIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY 379 (494)
T ss_pred ------EECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC
Confidence 1122 24555432210 0 000 0 0 00 0 0224456677888
Q ss_pred CCcccccccccccCceeeeeeccCC--CC----CCcEEee--cCCCCcEE-EEecCCCCChhhhHHHHHHHHHHHhCCC
Q 011027 411 PKLRDLCLADFISNRKVRIGLRPYM--PD----GKPVIGP--VPGLSKVF-LATGHEGLGLSLALGTAELVADMVLTNP 480 (495)
Q Consensus 411 p~l~~~~~~~~~~~~~~~~g~r~~t--~D----~~Piig~--~~~~~~l~-~~~G~g~~G~~~ap~~a~~la~~i~g~~ 480 (495)
|.+....+. ...+|+|+.- +| +.-+.|. +...++.+ ++.| -|-|.+.+..+++.+++.+..+.
T Consensus 380 p~~~~~d~~------~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~-~SPgat~s~~i~~~v~~~~~~~~ 451 (494)
T PRK05257 380 PNAKPEDWE------LIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLG-ASPGASTAVPIMLEVLEKCFPDR 451 (494)
T ss_pred CCCCHHHce------EcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcC-CCchHHHHHHHHHHHHHHhCHhh
Confidence 988654332 1368999984 44 4455563 23345655 5455 58999999999999999876544
No 30
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.9e-24 Score=195.43 Aligned_cols=318 Identities=21% Similarity=0.234 Sum_probs=209.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhc------CCccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVG------SDLSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKM 152 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~------~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~ 152 (495)
..+|+|||+|++||++|+.+.+. .-.+|+|++-+....-.|..++|++.+.... +.....++.+.+.+.|..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~ 82 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH 82 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 46899999999999999888641 2368999987766666777888888776532 222345666677777766
Q ss_pred HHH--HHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCC
Q 011027 153 LAD--SLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPY 230 (495)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 230 (495)
+.. .-++.|+ ....|..... ++. .+.. .+.+.+.-+.++.++.+|+. .+|.. ...|+++ .
T Consensus 83 l~rs~~a~~aGV-------~l~sg~~ls~-~e~-~~~~---~~~w~diV~~fr~l~e~EL~-~f~~~----~~~G~~~-T 144 (342)
T KOG3923|consen 83 LARSEEAGEAGV-------CLVSGHILSD-SES-LDDQ---QRSWGDIVYGFRDLTERELL-GFPDY----STYGIHF-T 144 (342)
T ss_pred Hhccccccccce-------EEeeeeeecc-CCC-chhh---hhhHHhhhhhhhcCCHHHhc-CCCCc----cccceeE-E
Confidence 654 2222332 1122333222 111 1111 11122222346667777776 44421 1223332 2
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhc
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRE 310 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~ 310 (495)
.-..++.+++.+|.+.+.+.| ..++..+|+++... .+ -.+|+||+|+|.|+..|..+
T Consensus 145 t~~sE~~~ylpyl~k~l~e~G-----vef~~r~v~~l~E~-----------~~---~~~DVivNCtGL~a~~L~gD---- 201 (342)
T KOG3923|consen 145 TYLSEGPKYLPYLKKRLTENG-----VEFVQRRVESLEEV-----------AR---PEYDVIVNCTGLGAGKLAGD---- 201 (342)
T ss_pred EeeccchhhhHHHHHHHHhcC-----cEEEEeeeccHHHh-----------cc---CCCcEEEECCccccccccCC----
Confidence 345667799999999888876 44556667666432 00 23699999999999998764
Q ss_pred cccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCC
Q 011027 311 TEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGF 390 (495)
Q Consensus 311 ~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~ 390 (495)
-.++|+|||++.++++ ..++-+ |.+ ... .+. .+..+.+.+|++.+++++
T Consensus 202 ------d~~yPiRGqVl~V~Ap---Wvkhf~----~~D-------------~~~----ty~-iP~~~~V~lGg~~Q~g~w 250 (342)
T KOG3923|consen 202 ------DDLYPIRGQVLKVDAP---WVKHFI----YRD-------------FSR----TYI-IPGTESVTLGGTKQEGNW 250 (342)
T ss_pred ------cceeeccceEEEeeCC---ceeEEE----Eec-------------CCc----cEE-ecCCceEEEccccccCcc
Confidence 2399999999999875 112111 110 000 022 234678999999999999
Q ss_pred CccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEEee-cC---CCCcEEEEecCCCCChhhhH
Q 011027 391 NTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVIGP-VP---GLSKVFLATGHEGLGLSLAL 466 (495)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Piig~-~~---~~~~l~~~~G~g~~G~~~ap 466 (495)
+.+++.+|...++++..++.|.|...++. ..|+|+||..+- .-+--. .+ ...-++.+.||||.|++.++
T Consensus 251 ~~ei~~~D~~dIl~rc~aL~P~l~~a~ii------~E~vGlRP~Rk~-vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~w 323 (342)
T KOG3923|consen 251 NLEITDEDRRDILERCCALEPSLRHAEII------REWVGLRPGRKQ-VRLEAELRTRGGKRLTVVHNYGHGGNGFTLGW 323 (342)
T ss_pred cCcCChhhHHHHHHHHHHhCcccccceeh------hhhhcccCCCCc-eeeeeeeecCCCccceeEeeccCCCCceeccc
Confidence 99999999999999999999999887653 359999999874 333222 11 12336899999999999999
Q ss_pred HHHHHHHHHHh
Q 011027 467 GTAELVADMVL 477 (495)
Q Consensus 467 ~~a~~la~~i~ 477 (495)
++|-..+.++.
T Consensus 324 GtAlea~~Lv~ 334 (342)
T KOG3923|consen 324 GTALEAAKLVL 334 (342)
T ss_pred chHHHHHHHHH
Confidence 99999888875
No 31
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.88 E-value=5.4e-22 Score=192.63 Aligned_cols=354 Identities=19% Similarity=0.171 Sum_probs=226.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHH-HH
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLAD-SL 157 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 157 (495)
..++||+|||||.+|+-+|+..+ .||++|.|+|++++++|+|+++..++|.+..+.+...++|....+++..+.+. ..
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~-TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~ 143 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAA-TRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERA 143 (680)
T ss_pred CCcccEEEECCCccCcceeehhh-cccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45699999999999999999987 69999999999999999999999999999887777677777666666544322 21
Q ss_pred HhcCCCCc---------cccceEeeeeEEEecCHHHHHHHHHHHHHHH--HcCCceEEcChhhHHHhCCCCccCCcceEE
Q 011027 158 RDQGLDPL---------QVIGWKQTGSLLIGRTPEELVMLKERVKQLC--EAGLRAEYLSSSDLLQAEPELMVGEDSRAA 226 (495)
Q Consensus 158 ~~~~~~~~---------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~ 226 (495)
.--.+.|. +-..|++...+++..+-- +... +.--...+++++++.+.+|.|...+..+++
T Consensus 144 ~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~Y---------D~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~ 214 (680)
T KOG0042|consen 144 NLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIY---------DLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAM 214 (680)
T ss_pred HHhhcCccccCCcceeeehhhhhhhhheeecceee---------eeeccccccccceeecHHHHHHhCccccccCceeEE
Confidence 11111110 011133333333332211 1110 011146789999999999999977777777
Q ss_pred EeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC---Ce--eeecCeEEEccCcchH
Q 011027 227 FLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK---NT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 227 ~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~---g~--~~~a~~VV~A~G~~s~ 301 (495)
.+.+ |+.|-.+++-.+.-.+.++| ..+..+.+|.++.+++ ++++.++...| |+ .+.|+.||+|||+++.
T Consensus 215 VYyD-GQ~nDaRmnl~vAlTA~r~G----A~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 215 VYYD-GQHNDARMNLAVALTAARNG----ATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred EEec-CCCchHHHHHHHHHHHHhcc----hhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 7665 45555566555554555555 2566778999998874 45666665443 32 3456999999999999
Q ss_pred HHHHHhhhccccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEe
Q 011027 302 SLMHDLLRETEIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVL 381 (495)
Q Consensus 302 ~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 381 (495)
.+.++-..+ ...-+.|..|.++.++.--. +. ..|.+++ . ..|++ +. +..++.|..+.
T Consensus 289 sIr~Mdd~~----~~~i~~pSsGvHIVlP~yY~--P~----~mGlldP-------~-TsDgR---Vi--FflPWqg~TIa 345 (680)
T KOG0042|consen 289 SIRKMDDED----AKPICVPSSGVHIVLPGYYC--PE----NMGLLDP-------K-TSDGR---VI--FFLPWQGKTIA 345 (680)
T ss_pred HHHhhcccc----cCceeccCCceeEEcccccC--Cc----ccccccC-------C-CCCCc---EE--EEeccCCceee
Confidence 998763111 11126677777777653210 00 1222211 0 01122 21 12357788888
Q ss_pred ccccccc--CCCccccHHHHHHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCcEE------eec---CCCCc
Q 011027 382 GSSRQFA--GFNTEVEQTIIDRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKPVI------GPV---PGLSK 450 (495)
Q Consensus 382 G~t~~~~--~~~~~~~~~~~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~Pii------g~~---~~~~~ 450 (495)
|.|..+. ..++.+++++++.+++.++.++.---.++-.++ +..|+|+||...|-.+.- ..+ -.-+|
T Consensus 346 GTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DV---lsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~g 422 (680)
T KOG0042|consen 346 GTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDV---LSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSG 422 (680)
T ss_pred ccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhh---HHHhhCCcccccCCCccccchhhhhhceEEecCCC
Confidence 9887664 346778999999999999998853212222233 347999999987764311 100 01368
Q ss_pred EEEEecCCCCChhhhHHHHHHHHHHHh
Q 011027 451 VFLATGHEGLGLSLALGTAELVADMVL 477 (495)
Q Consensus 451 l~~~~G~g~~G~~~ap~~a~~la~~i~ 477 (495)
|+..+|. -|++---+||.-.+.+.
T Consensus 423 LiTIaGG---KWTTyR~MAEeTVd~aI 446 (680)
T KOG0042|consen 423 LITIAGG---KWTTYRHMAEETVDAAI 446 (680)
T ss_pred eEEEecC---cchhHHHHHHHHHHHHH
Confidence 9888874 68888888888877765
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.65 E-value=2.5e-14 Score=139.44 Aligned_cols=245 Identities=17% Similarity=0.123 Sum_probs=168.1
Q ss_pred cccEEEECCCHHHHHHHHHHHh-cCCccEEEEcCC-cCCCCcc--cCCcceeeeccC----CCCch-----HHH--HHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV-GSDLSVAVVDKV-VPCSGAT--GAGQGYIWMVHR----TPGSE-----IWD--LALR 145 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~-~~G~~V~liE~~-~~~~gaS--~~~~g~i~~~~~----~~~~~-----~~~--l~~~ 145 (495)
++||++|||||+|++.++.|.+ +..++|+|+||- .++..+| +||+|=.|.... +|... ..+ -..+
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~Ine 82 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKINE 82 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHHH
Confidence 6899999999999999999975 478999999996 4554444 466665544432 33321 111 1112
Q ss_pred HHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCC--ceEEc-ChhhHHHhCCCCcc---
Q 011027 146 SNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGL--RAEYL-SSSDLLQAEPELMV--- 219 (495)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~p~l~~--- 219 (495)
..++-+++...+-+.+.-+.++-....+..+.+...+++.+.++++++.++++.+ .+++. |.+++.+..|.+..
T Consensus 83 qFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR~ 162 (488)
T PF06039_consen 83 QFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGRD 162 (488)
T ss_pred HHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCCC
Confidence 2223333333332333321111234566777777888889999999999887643 36666 78999999887642
Q ss_pred -CCcceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-----CCeeeecCeEE
Q 011027 220 -GEDSRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-----KNTLYSKKAIV 293 (495)
Q Consensus 220 -~~~~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-----~g~~~~a~~VV 293 (495)
+....+.+.+.+--+|-..+.+.|.+.+.+.. ++.++++++|++|.+. ++..|.|.+. +...+.++.|+
T Consensus 163 ~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~---~~~~~~~~eV~~i~r~--~dg~W~v~~~~~~~~~~~~v~a~FVf 237 (488)
T PF06039_consen 163 PSEPVAATRVEEGTDVNFGALTRQLVEYLQKQK---GFELHLNHEVTDIKRN--GDGRWEVKVKDLKTGEKREVRAKFVF 237 (488)
T ss_pred CCCceeeeecCCCccccHHHHHHHHHHHHHhCC---CcEEEecCEeCeeEEC--CCCCEEEEEEecCCCCeEEEECCEEE
Confidence 33456778888889999999999998887752 3799999999999987 3444878753 22466789999
Q ss_pred EccCcchHHHHHHhhhccccccccceeecceeEEEEeec
Q 011027 294 VAAGCWSGSLMHDLLRETEIVLDIPVKPRKGHLLVLENF 332 (495)
Q Consensus 294 ~A~G~~s~~l~~~l~~~~~~~~~~~l~~~rgq~~~~~~~ 332 (495)
+.+|+++-.|++...-. -+......|+.||.+..+++
T Consensus 238 vGAGG~aL~LLqksgi~--e~~gyggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 238 VGAGGGALPLLQKSGIP--EGKGYGGFPVSGQFLRCKNP 274 (488)
T ss_pred ECCchHhHHHHHHcCCh--hhcccCCCcccceEEecCCH
Confidence 99999999998874100 02245688999999988754
No 33
>PRK06185 hypothetical protein; Provisional
Probab=99.46 E-value=7.9e-12 Score=127.01 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE--cCCCe-eeecCeEEEccCcchHHHHHHhhhcc
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ--TSKNT-LYSKKAIVVAAGCWSGSLMHDLLRET 311 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~--~~~g~-~~~a~~VV~A~G~~s~~l~~~l~~~~ 311 (495)
.-..+.+.|.+.+.+.. +++++++++|+++..+ ++++++|. +.+|+ .+.+|.||.|.|.++. +.+.+
T Consensus 106 ~~~~l~~~L~~~~~~~~---~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~---- 175 (407)
T PRK06185 106 PQWDFLDFLAEEASAYP---NFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALA---- 175 (407)
T ss_pred ehHHHHHHHHHHHhhCC---CcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHc----
Confidence 33467777877765532 2688999999999876 45555444 34563 5678999999999985 44443
Q ss_pred ccccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCcccccceeeeeeeeeeccccEEecccccccCCC
Q 011027 312 EIVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQILSISMTATTDVIGNLVLGSSRQFAGFN 391 (495)
Q Consensus 312 ~~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~iG~t~~~~~~~ 391 (495)
+...+..+..+++.++..+...... .....-+. ....+ ...|.. +.+.++.+..... .
T Consensus 176 --gi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~g~~--~llP~~-~~~~i~~~~~~~~-~ 233 (407)
T PRK06185 176 --GLEVREFGAPMDVLWFRLPREPDDP-ESLMGRFG---------------PGQGL--IMIDRG-DYWQCGYVIPKGG-Y 233 (407)
T ss_pred --CCCccccCCCceeEEEecCCCCCCC-cccceEec---------------CCcEE--EEEcCC-CeEEEEEEecCCC-c
Confidence 3344455666666655432111000 00000000 00011 222333 5666776554322 2
Q ss_pred ccccHHHHHHHHHHHHhhcCCcccc--cccccccCceee----eeeccCCCCCCcEEeecCCCCcEEEEecCCCCChhhh
Q 011027 392 TEVEQTIIDRIWKRAAEFYPKLRDL--CLADFISNRKVR----IGLRPYMPDGKPVIGPVPGLSKVFLATGHEGLGLSLA 465 (495)
Q Consensus 392 ~~~~~~~~~~~~~~l~~~~p~l~~~--~~~~~~~~~~~~----~g~r~~t~D~~Piig~~~~~~~l~~~~G~g~~G~~~a 465 (495)
........+.+.+.+.+.+|.+... .+..... .+.+ .-.+.+..++..++|.. .+...-++|.|+.+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~rv~LvGDA-----Ah~~~P~~GqG~nlg 307 (407)
T PRK06185 234 AALRAAGLEAFRERVAELAPELADRVAELKSWDD-VKLLDVRVDRLRRWHRPGLLCIGDA-----AHAMSPVGGVGINLA 307 (407)
T ss_pred hhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccc-cEEEEEeccccccccCCCeEEEecc-----ccccCcccccchhHH
Confidence 2334445567777777777764320 0110000 0001 11223456788888864 556677889999999
Q ss_pred HHHHHHHHHHHh
Q 011027 466 LGTAELVADMVL 477 (495)
Q Consensus 466 p~~a~~la~~i~ 477 (495)
.--|..|++.+.
T Consensus 308 l~Da~~La~~l~ 319 (407)
T PRK06185 308 IQDAVAAANILA 319 (407)
T ss_pred HHHHHHHHHHHH
Confidence 866666665554
No 34
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.45 E-value=3.8e-11 Score=116.34 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=46.7
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-CCeeeecCeEEEccCcchHHHHHH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-KNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
.++...+.+.|.+.+.+.| ++++++++|+++..+ ++.+ .+... ++..+.+|.||.|+|.++. +.+.
T Consensus 87 ~i~r~~l~~~l~~~~~~~g----v~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~ 153 (295)
T TIGR02032 87 VIDRDAFDEQLAERAQEAG----AELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIGADGSRSI-VAKK 153 (295)
T ss_pred EEEHHHHHHHHHHHHHHcC----CEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEECCCcchH-HHHh
Confidence 4566678888888887765 688999999999775 3332 33322 3445667999999999874 4443
No 35
>PRK07121 hypothetical protein; Validated
Probab=99.44 E-value=2.2e-12 Score=133.89 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=106.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
.++||||||+|++|+++|++++ +.|.+|+||||.....|+|..+.|.++...................+++.+.....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aa-e~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~- 96 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAA-AAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVG- 96 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhC-
Confidence 4789999999999999999998 59999999999877778888888877643111000000000000112222211110
Q ss_pred cCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCc-----------------
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELM----------------- 218 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~----------------- 218 (495)
.. .+++. .+...+.++++.++|+++......+ ...+|.-.
T Consensus 97 ~~------------------~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~-~~~~p~~~~~~~~~g~~~~~~~~~~ 157 (492)
T PRK07121 97 PG------------------VDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPE-KTSYPPNDEGLYYSGNEKAWPFAEI 157 (492)
T ss_pred CC------------------CCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCC-cccCCCCCcccccchhhcchhhhhc
Confidence 00 00110 1111223445555666654211000 00011000
Q ss_pred cCCcceEEEeCCCcee-cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC-C--eeeec-CeEE
Q 011027 219 VGEDSRAAFLPYDSQL-DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK-N--TLYSK-KAIV 293 (495)
Q Consensus 219 ~~~~~~~~~~~~~g~~-~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~-g--~~~~a-~~VV 293 (495)
......+......+.. ....+++.|.+.+++.| ++++++++|++|..++ ++++.+|...+ + ..+.+ +.||
T Consensus 158 ~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~g----v~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VV 232 (492)
T PRK07121 158 AKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALG----VQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVV 232 (492)
T ss_pred cCCcccceecCCCCCCCchHHHHHHHHHHHHhCC----CEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEE
Confidence 0000011111111121 35678888888887765 6999999999998753 46788776532 2 23456 8999
Q ss_pred EccCcchH
Q 011027 294 VAAGCWSG 301 (495)
Q Consensus 294 ~A~G~~s~ 301 (495)
+|||.+..
T Consensus 233 lAtGg~~~ 240 (492)
T PRK07121 233 LAAGGFAM 240 (492)
T ss_pred ECCCCcCc
Confidence 99998764
No 36
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.44 E-value=1.1e-11 Score=125.14 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=58.6
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccc
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETE 312 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~ 312 (495)
.++...+.+.|.+.+++.| ++++++++|+++..+ ++ .+.|++.+|..+.+|.||.|+|.++ .+.+.+
T Consensus 109 ~v~~~~l~~~L~~~~~~~g----v~i~~~~~v~~i~~~--~~-~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~----- 175 (392)
T PRK08773 109 IVENDLLVDRLWAALHAAG----VQLHCPARVVALEQD--AD-RVRLRLDDGRRLEAALAIAADGAAS-TLRELA----- 175 (392)
T ss_pred EEEhHHHHHHHHHHHHhCC----CEEEcCCeEEEEEec--CC-eEEEEECCCCEEEeCEEEEecCCCc-hHHHhh-----
Confidence 3555678888888887755 689999999999865 33 3567777777677899999999998 455543
Q ss_pred cccccc--eeecceeEEEEee
Q 011027 313 IVLDIP--VKPRKGHLLVLEN 331 (495)
Q Consensus 313 ~~~~~~--l~~~rgq~~~~~~ 331 (495)
+...+ -.+.++++..++.
T Consensus 176 -g~~~~~~~~~~~~~~~~v~~ 195 (392)
T PRK08773 176 -GLPVSRHDYAQRGVVAFVDT 195 (392)
T ss_pred -cCCceEEEeccEEEEEEEEc
Confidence 22222 2344566665543
No 37
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.43 E-value=1.9e-11 Score=124.38 Aligned_cols=65 Identities=17% Similarity=0.156 Sum_probs=46.9
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
+.-..+-+.|.+.+++.| +.++++++|+++..+ ++++..+.+. +..+.++.||.|+|.++ .+.+.
T Consensus 105 v~R~~fD~~L~~~a~~~G----v~i~~~~~V~~i~~~--~g~v~~v~~~-g~~i~A~~VI~A~G~~s-~l~~~ 169 (428)
T PRK10157 105 VLRSKFDAWLMEQAEEAG----AQLITGIRVDNLVQR--DGKVVGVEAD-GDVIEAKTVILADGVNS-ILAEK 169 (428)
T ss_pred eEHHHHHHHHHHHHHHCC----CEEECCCEEEEEEEe--CCEEEEEEcC-CcEEECCEEEEEeCCCH-HHHHH
Confidence 344567788888887766 689999999999875 4555556544 44456799999999865 45444
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.37 E-value=4.7e-12 Score=131.56 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=107.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHH---HHHHHHHHHHHHHH
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDL---ALRSNKLWKMLADS 156 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l---~~~~~~~~~~~~~~ 156 (495)
.++||||||+|++|+++|++++ +.|.+|+||||.....|+|..+.|.++... ....+- .....++++++.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa-~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~----~~~~~~~g~~d~~~~~~~~~~~~ 134 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAK-DAGMNPVILEKMPVAGGNTMKASSGMNASE----TKFQKAQGIADSNDKFYEETLKG 134 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHH-HCCCCEEEEECCCCCCCcccccCCccccCC----hHHHHhcCCCCCHHHHHHHHHHh
Confidence 3789999999999999999998 599999999998776777766665553211 111000 00011233333221
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHH----HHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCc
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELV----MLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g 232 (495)
. . .. .+++... ...+.++++.+.|+++..... .+ .......+.|..+
T Consensus 135 ~--~---------~~--------~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~------~~----g~~~~r~~~p~~g 185 (506)
T PRK06481 135 G--G---------GT--------NDKALLRYFVDNSASAIDWLDSMGIKLDNLTI------TG----GMSEKRTHRPHDG 185 (506)
T ss_pred c--C---------CC--------CCHHHHHHHHhccHHHHHHHHHcCceEeeccc------CC----CCCCCceeccCCC
Confidence 0 0 00 0111111 112334556667776543210 00 0111223445555
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc--CCC--eeeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT--SKN--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~--~~g--~~~~a~~VV~A~G~~s~ 301 (495)
......++..|.+.+++.| ++++++++|++|..+ ++++.+|.. .++ ..+.++.||+|+|.+..
T Consensus 186 ~~~g~~l~~~L~~~~~~~g----v~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 186 SAVGGYLVDGLLKNVQERK----IPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred CCChHHHHHHHHHHHHHcC----CeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 5555678888888887765 799999999999864 566666654 343 24667999999998765
No 39
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.36 E-value=1.2e-11 Score=127.72 Aligned_cols=184 Identities=20% Similarity=0.203 Sum_probs=104.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC--CCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP--CSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~--~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||||||+|++|+++|++|+ +.|.+|+||||... ..|+|..+.|+.+. ...+.... .......++++++.+...
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa-~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAR-EAGASVLLLEAAPREWRGGNSRHTRNLRCM-HDAPQDVL-VGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHH-HCCCeEEEEeCCCCcCCCcccccCCceeee-CCCchhhc-cccccHHHHHHHHHHhhC
Confidence 689999999999999999998 59999999999853 45677777773322 21111000 000011233444433211
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
.. .+ . ..+. .-.+...+..+++.+.|+++........ .+ .....++..+ ...
T Consensus 81 ~~-~~------~---~~~~-----~~~~~s~~~~~wl~~~Gv~~~~~~~~~~---~~------~~~~~~~~g~----g~~ 132 (466)
T PRK08274 81 GR-TD------E---ALAR-----LLIRESSDCRDWMRKHGVRFQPPLSGAL---HV------ARTNAFFWGG----GKA 132 (466)
T ss_pred CC-CC------H---HHHH-----HHHHcCHHHHHHHHhCCceEeecCCCcc---cc------CCCCeeecCC----HHH
Confidence 00 00 0 0000 0001111234455667776654221110 00 0011112211 457
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC--CC--eeeecCeEEEccCcchH
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS--KN--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~--~g--~~~~a~~VV~A~G~~s~ 301 (495)
++..|.+.+++.| ++++++++|++|..+ ++++++|.+. ++ ..+.++.||+|+|.+..
T Consensus 133 l~~~l~~~~~~~g----v~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 133 LVNALYRSAERLG----VEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHCC----CEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence 8888888887765 699999999999875 5677777653 23 34567999999998653
No 40
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.36 E-value=1.3e-11 Score=118.23 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=95.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc-CCCCcccCCcceeeeccCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV-PCSGATGAGQGYIWMVHRTP-GSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~-~~~gaS~~~~g~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
.+||+|||||.+|+.+|..++ ++|.+|+|||++. ++.-=--...|.++..+... +....+.-.....++..+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa-~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~--- 78 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAA-KAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR--- 78 (408)
T ss_pred cceEEEECCCHHHHHHHHHHh-hcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh---
Confidence 589999999999999999998 5999999999974 32111111112222211111 10000000001111111111
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
| +++ ++.+.+..+|++... ...|-.||... ....
T Consensus 79 -----------f----------t~~------d~i~~~e~~Gi~~~e-----------------~~~Gr~Fp~sd--kA~~ 112 (408)
T COG2081 79 -----------F----------TPE------DFIDWVEGLGIALKE-----------------EDLGRMFPDSD--KASP 112 (408)
T ss_pred -----------C----------CHH------HHHHHHHhcCCeeEE-----------------ccCceecCCcc--chHH
Confidence 0 011 223334445554321 12233444421 2347
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
+++.|+..+++.| |+++++++|.++.++ +....+.+++|+.+.+|.+|+|+|.-+
T Consensus 113 Iv~~ll~~~~~~g----V~i~~~~~v~~v~~~---~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 113 IVDALLKELEALG----VTIRTRSRVSSVEKD---DSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred HHHHHHHHHHHcC----cEEEecceEEeEEec---CceEEEEcCCCCEEEccEEEEecCCcC
Confidence 8999999999876 799999999999885 346789999997666799999999643
No 41
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.34 E-value=3.8e-12 Score=127.18 Aligned_cols=163 Identities=20% Similarity=0.262 Sum_probs=83.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCC---CcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCS---GATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~---gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
|||+|||||.+|+++|+.|+ +.|.+|+||||+.... -.||+..--+......+......+. ...++.+...+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa-~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~-~~~~f~~~~l~~-- 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAA-EKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYG-RNPKFLKSALKR-- 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHH-HTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-T-BTTTCTHHHHHH--
T ss_pred CcEEEECCCHHHHHHHHHHH-hCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcc-cchHHHHHHHhc--
Confidence 68999999999999999998 5999999999985421 2344322222221111100000000 000001111100
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
| ..++..+.++++|++...- ..+-+||... ....
T Consensus 77 -----------f----------------~~~d~~~ff~~~Gv~~~~~-----------------~~gr~fP~s~--~a~~ 110 (409)
T PF03486_consen 77 -----------F----------------SPEDLIAFFEELGVPTKIE-----------------EDGRVFPKSD--KASS 110 (409)
T ss_dssp -----------S-----------------HHHHHHHHHHTT--EEE------------------STTEEEETT----HHH
T ss_pred -----------C----------------CHHHHHHHHHhcCCeEEEc-----------------CCCEECCCCC--cHHH
Confidence 0 0112334445556543211 1234555543 4567
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
++..|++.+++.| ++++++++|.+|+.+ +++++.|+++++..+.+|.||+|+|..+
T Consensus 111 Vv~~L~~~l~~~g----v~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 111 VVDALLEELKRLG----VEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHT-----EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHcC----CEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEEecCCCC
Confidence 8999999998887 799999999999887 5667899996666666799999999744
No 42
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.33 E-value=1.2e-10 Score=117.53 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=48.7
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
.++...+.+.|.+.+++.+ ++.++ +++|+++..+ ++ .+.|++.+|..+.+|.||.|.|.++. +...
T Consensus 107 ~i~~~~l~~~L~~~~~~~~---~v~~~-~~~v~~i~~~--~~-~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~ 172 (388)
T PRK07608 107 IVESSLIERALWAALRFQP---NLTWF-PARAQGLEVD--PD-AATLTLADGQVLRADLVVGADGAHSW-VRSQ 172 (388)
T ss_pred EEEhHHHHHHHHHHHHhCC---CcEEE-cceeEEEEec--CC-eEEEEECCCCEEEeeEEEEeCCCCch-HHHh
Confidence 4667788899988887654 35777 8899998764 33 35688777765667999999999875 4443
No 43
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.32 E-value=1.3e-11 Score=126.69 Aligned_cols=184 Identities=18% Similarity=0.205 Sum_probs=105.2
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQG 161 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 161 (495)
||||||||++|+++|++++ ++| .+|+||||.....|+|..+.|.++....... ....+......+++.+.... .
T Consensus 1 DVvVVG~G~AGl~AA~~aa-~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~--~- 75 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAK-KAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQ-KALGIEDSPELFIKDTLKGG--R- 75 (439)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCccEEEEecCCCCCCcccccCceeecCCCHHH-HhcCCCCCHHHHHHHHHHhc--C-
Confidence 7999999999999999998 599 9999999998778888887777654321100 00000000011122221110 0
Q ss_pred CCCccccceEeeeeEEEecCHHHHHH----HHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHH
Q 011027 162 LDPLQVIGWKQTGSLLIGRTPEELVM----LKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAM 237 (495)
Q Consensus 162 ~~~~~~~~~~~~g~l~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~ 237 (495)
. ..+++..+. ....++++. .+++++.-. .. .. . .......+.+.++.....
T Consensus 76 --------~--------~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~---~~-~~---~-~~~~~~~~~~~~g~~~g~ 130 (439)
T TIGR01813 76 --------G--------INDPELVRILAEESADAVDWLQ-DGVGARLDD---LI-QL---G-GHSVPRAHRPTGGAGSGA 130 (439)
T ss_pred --------C--------CCCHHHHHHHHhccHHHHHHHH-hCCCeeecc---cc-cc---C-CcCCCccccCCCCCCCHH
Confidence 0 011111111 111223333 233322210 00 00 0 011112234445556677
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc--CCCe--eeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT--SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~--~~g~--~~~a~~VV~A~G~~s~ 301 (495)
.+++.|.+.+++.| ++++++++|++|..++ ++++++|.. .+++ ++.++.||+|+|.++.
T Consensus 131 ~l~~~l~~~~~~~g----v~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 131 EIVQKLYKKAKKEG----IDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHcC----CEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 89999999888876 6999999999998753 456766654 3443 4567999999999876
No 44
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.32 E-value=1.7e-10 Score=117.20 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=51.0
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
.++...+.+.|.+.+.+.| +.++++++|+++..+ ++ .+.|++.+|..+.+|.||.|.|.++. +...
T Consensus 107 ~i~r~~l~~~L~~~~~~~g----v~v~~~~~v~~i~~~--~~-~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~ 172 (403)
T PRK07333 107 MVENRVLINALRKRAEALG----IDLREATSVTDFETR--DE-GVTVTLSDGSVLEARLLVAADGARSK-LREL 172 (403)
T ss_pred EeEhHHHHHHHHHHHHhCC----CEEEcCCEEEEEEEc--CC-EEEEEECCCCEEEeCEEEEcCCCChH-HHHH
Confidence 4666788999998887765 688999999999765 33 45677777777778999999999875 4443
No 45
>PLN02697 lycopene epsilon cyclase
Probab=99.31 E-value=9.1e-10 Score=113.59 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=61.3
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccc
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETE 312 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~ 312 (495)
.++...+.+.|.+.+.+.| +++ .+++|+++..+ ++.+..+.+.+|..+.++.||.|+|+++..+..... .
T Consensus 188 ~V~R~~L~~~Ll~~a~~~G----V~~-~~~~V~~I~~~--~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~-~-- 257 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESG----VSY-LSSKVDRITEA--SDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEV-G-- 257 (529)
T ss_pred EEcHHHHHHHHHHHHHhcC----CEE-EeeEEEEEEEc--CCcEEEEEEcCCcEEECCEEEECCCcChhhhhcccc-C--
Confidence 5777888899998887655 454 77899998765 333333455667667789999999999965544100 0
Q ss_pred cccccceeecceeEEEEeec
Q 011027 313 IVLDIPVKPRKGHLLVLENF 332 (495)
Q Consensus 313 ~~~~~~l~~~rgq~~~~~~~ 332 (495)
+...+.+..+|+.+.++..
T Consensus 258 -~~~~~~Q~a~Gi~ve~~~~ 276 (529)
T PLN02697 258 -GPRVCVQTAYGVEVEVENN 276 (529)
T ss_pred -CCCcccEEEEEEEEEecCC
Confidence 1224578888998887653
No 46
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.28 E-value=7.6e-11 Score=120.22 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=103.3
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGL 162 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 162 (495)
||||||+|++|+++|+.|+ +.|.+|+||||....+|+|..+.|.++........ .........++++++.+......
T Consensus 1 DVvVIG~G~AGl~AA~~Aa-e~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~- 77 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAA-EAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQR-EAGIEDSPEEFFQDIMAAGGGLN- 77 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHH-HTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSH-HTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred CEEEECCCHHHHHHHHHHh-hhcCeEEEEEeecccccccccccCceeeecccccc-cccccccccccceeeeccccccc-
Confidence 8999999999999999998 59999999999876666777777777654421110 00000001112222222211000
Q ss_pred CCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEE-eCC---CceecHH
Q 011027 163 DPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAF-LPY---DSQLDAM 237 (495)
Q Consensus 163 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~-~~~---~g~~~p~ 237 (495)
+ ...+ ..-.+...+.++++.+.|+++..-..... ....+.. .......+ .++ ..+....
T Consensus 78 ~---------~~~~-----~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~g~ 141 (417)
T PF00890_consen 78 D---------PDLV-----RAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGH--SPRWRSPPGNPDPPFGGLGGGK 141 (417)
T ss_dssp ----------HHHH-----HHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTE--SSTEEEEESSTTSSSHCCCHHH
T ss_pred c---------cchh-----hhhhhcccceehhhhhhcccccccccccccccccCCc--cccceeeeccccccccccccHH
Confidence 0 0000 00112233445566666766543100000 0000000 00001111 111 1122446
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CCe--eeecCeEEEccCcchHHHHH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KNT--LYSKKAIVVAAGCWSGSLMH 305 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g~--~~~a~~VV~A~G~~s~~l~~ 305 (495)
.++..|.+.+++.| ++++++++|++|..+ ++++.+|... +|+ .+.++.||+|||.+...++.
T Consensus 142 ~~~~~l~~~~~~~g----v~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~ 208 (417)
T PF00890_consen 142 ALIEALAKAAEEAG----VDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLR 208 (417)
T ss_dssp HHHHHHHHHHHHTT----EEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHH
T ss_pred HHHHHHHHHHhhcC----eeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccc
Confidence 78889999888876 799999999999997 6788888755 453 34568999999998864433
No 47
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.28 E-value=2.7e-10 Score=114.99 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=47.0
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
+....+.+.|.+.+.+.+ ++. +++++|+++..+ ++ .+.|++++|+.+.+|.||.|.|.++. +.+.
T Consensus 108 i~~~~l~~~L~~~~~~~~---~~~-~~~~~v~~i~~~--~~-~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~ 172 (388)
T PRK07494 108 IPNWLLNRALEARVAELP---NIT-RFGDEAESVRPR--ED-EVTVTLADGTTLSARLVVGADGRNSP-VREA 172 (388)
T ss_pred eEhHHHHHHHHHHHhcCC---CcE-EECCeeEEEEEc--CC-eEEEEECCCCEEEEeEEEEecCCCch-hHHh
Confidence 445567888888777654 234 789999999764 33 35677778877778999999999874 4343
No 48
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.27 E-value=1.1e-09 Score=110.49 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=48.0
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+-.++-..+.+.|.+.+++.| +.++..+.|+.+..+ ++.++.....++..+.++.||.|.|..+.
T Consensus 89 ~y~v~R~~fd~~La~~A~~aG----ae~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAG----AELYPGTRVTGVIRE--DDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcC----CEEEeceEEEEEEEe--CCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 445666789999999999887 589999999999887 33344333333355667999999998654
No 49
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.27 E-value=8.8e-10 Score=111.14 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=49.5
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
++-..+.+.|.+.+.+.+ ++.++.+++|+++..+ ++ .+.+++.+|+.+.+|.||.|.|.++. +.+.
T Consensus 103 i~r~~l~~~L~~~~~~~~---~~~v~~~~~v~~i~~~--~~-~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~ 168 (385)
T TIGR01988 103 VENRVLQQALWERLQEYP---NVTLLCPARVVELPRH--SD-HVELTLDDGQQLRARLLVGADGANSK-VRQL 168 (385)
T ss_pred EEcHHHHHHHHHHHHhCC---CcEEecCCeEEEEEec--CC-eeEEEECCCCEEEeeEEEEeCCCCCH-HHHH
Confidence 444578888888887754 3688999999999765 33 35677788876778999999999875 4343
No 50
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.26 E-value=1e-09 Score=111.38 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=46.2
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+....+.+.|.+.+.+.+ +.++++++|+++..+ ++ .+.|++.+|+.+.+|.||.|.|.++.
T Consensus 109 i~~~~l~~~L~~~~~~~g----v~v~~~~~v~~i~~~--~~-~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 109 VENRVVQDALLERLHDSD----IGLLANARLEQMRRS--GD-DWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred EEhHHHHHHHHHHHhcCC----CEEEcCCEEEEEEEc--CC-eEEEEECCCCEEEeCEEEEecCCCch
Confidence 444567778877776654 688899999999765 33 35677778876778999999999884
No 51
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.26 E-value=1.8e-09 Score=110.02 Aligned_cols=35 Identities=43% Similarity=0.723 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+||+|||||++|+++|..|+ +.|++|+|||+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~-~~G~~v~v~E~~~ 51 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALK-DSGLRIALIEAQP 51 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 3689999999999999999998 5999999999974
No 52
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.25 E-value=7e-10 Score=111.75 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=49.5
Q ss_pred ecHHHHHHHHHHHhhhh-ccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 234 LDAMLAVAYIEKGNRHF-ASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~-g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
++...+.+.|.+.+.+. | ++++++++|+++..+ ++ .+.|++.+|..+.+|.||.|.|.++. +.+.
T Consensus 102 i~r~~l~~~L~~~~~~~~g----v~~~~~~~v~~i~~~--~~-~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~ 167 (382)
T TIGR01984 102 VELADLGQALLSRLALLTN----IQLYCPARYKEIIRN--QD-YVRVTLDNGQQLRAKLLIAADGANSK-VREL 167 (382)
T ss_pred EEcHHHHHHHHHHHHhCCC----cEEEcCCeEEEEEEc--CC-eEEEEECCCCEEEeeEEEEecCCChH-HHHH
Confidence 56678899999887763 3 688999999999865 33 35677777776778999999999875 4444
No 53
>PRK06847 hypothetical protein; Provisional
Probab=99.25 E-value=2e-09 Score=108.22 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=50.2
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~ 302 (495)
...++...+.+.|.+.+.+.| ++++++++|+++..+ ++ .+.|.+.+|+.+.+|.||.|+|.++.-
T Consensus 101 ~~~i~r~~l~~~L~~~~~~~g----v~v~~~~~v~~i~~~--~~-~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 101 GGGIMRPALARILADAARAAG----ADVRLGTTVTAIEQD--DD-GVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred cccCcHHHHHHHHHHHHHHhC----CEEEeCCEEEEEEEc--CC-EEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 345666788888988887665 688999999999764 33 356777788777789999999998753
No 54
>PRK08244 hypothetical protein; Provisional
Probab=99.25 E-value=5.5e-10 Score=116.30 Aligned_cols=34 Identities=32% Similarity=0.669 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++||+|||||++|+++|+.|+ +.|++|+||||..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~-~~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELA-LAGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCcEEEEecCC
Confidence 489999999999999999998 5999999999974
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.25 E-value=1.1e-09 Score=110.69 Aligned_cols=86 Identities=8% Similarity=-0.037 Sum_probs=58.4
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccc
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETE 312 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~ 312 (495)
.++...+.+.|.+.+.+.| +.+ ..++|+.+..+ ++..+.|.+.+|..+.++.||.|+|.++ .+ ....
T Consensus 81 ~i~~~~l~~~l~~~~~~~g----v~~-~~~~v~~i~~~--~~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~-~~~~---- 147 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGG----VLW-LERKAIHAEAD--GVALSTVYCAGGQRIQARLVIDARGFGP-LV-QYVR---- 147 (388)
T ss_pred EEcHHHHHHHHHHHHHhcC----cEE-EccEEEEEEec--CCceeEEEeCCCCEEEeCEEEECCCCch-hc-cccc----
Confidence 4777889999988887764 455 46788888764 3556778888886666799999999987 22 1100
Q ss_pred cccccceeecceeEEEEee
Q 011027 313 IVLDIPVKPRKGHLLVLEN 331 (495)
Q Consensus 313 ~~~~~~l~~~rgq~~~~~~ 331 (495)
.+....+....|+.+.++.
T Consensus 148 ~~~~~~~q~~~G~~~~~~~ 166 (388)
T TIGR01790 148 FPLNVGFQVAYGVEARLSR 166 (388)
T ss_pred CCCCceEEEEEEEEEEEcC
Confidence 0123445667788777653
No 56
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.23 E-value=4.3e-10 Score=117.75 Aligned_cols=188 Identities=22% Similarity=0.168 Sum_probs=104.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
.++||+|||+|++|+++|+.++ +.|.+|+||||.....|+|..++|.++......++.. .+++++...-
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aa-e~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e--------~~~~d~~~~g-- 83 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAAR-RAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPE--------AHVADTLVAG-- 83 (541)
T ss_pred cccCEEEECccHHHHHHHHHHH-HcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHH--------HHHHHHHHhc--
Confidence 3689999999999999999998 5899999999987766777776666654332222211 1112221110
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
.+. . .+ ..+ ..-.+...+.++++.++|+++..-..... ...+. .....-.++.. +-.....
T Consensus 84 ~g~-----~--d~-~~v-----~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~----g~~~~r~~~~~-~d~~G~~ 145 (541)
T PRK07804 84 AGL-----C--DP-DAV-----RSLVAEGPRAVRELVALGARFDESPDGRWALTREG----GHSRRRIVHAG-GDATGAE 145 (541)
T ss_pred CCC-----C--CH-HHH-----HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccC----CeecCeeEecC-CCCCHHH
Confidence 000 0 00 000 00111222334555667776532100000 00000 00011112211 1113356
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-------CC-eeeecCeEEEccCcchH
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-------KN-TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-------~g-~~~~a~~VV~A~G~~s~ 301 (495)
+++.|.+.+++.+ +.+++++.|++|..++ ++++.++... ++ ..+.++.||+|||.++.
T Consensus 146 i~~~L~~~~~~~g----V~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 146 VQRALDAAVRADP----LDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHHHhCC----CEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 8888888887765 7999999999998752 3567766542 33 35667999999999764
No 57
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.23 E-value=2.3e-10 Score=120.81 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc--CCCe-eeec-CeEEEccCcchHHH
Q 011027 230 YDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT--SKNT-LYSK-KAIVVAAGCWSGSL 303 (495)
Q Consensus 230 ~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~--~~g~-~~~a-~~VV~A~G~~s~~l 303 (495)
....+++..+++.|.+.+++.| ++++++++|++|..+ ++++.+|.. .++. .+.+ +.||+|+|.|+..+
T Consensus 210 ~~~~~~g~~l~~~L~~~a~~~G----v~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~ 281 (581)
T PRK06134 210 GMHLVNGNALVARLLKSAEDLG----VRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDP 281 (581)
T ss_pred CCcccCHHHHHHHHHHHHHhCC----CEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCH
Confidence 3445778889999999998876 699999999999875 567776654 3443 3456 89999999998643
No 58
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.23 E-value=1.5e-10 Score=119.85 Aligned_cols=185 Identities=19% Similarity=0.157 Sum_probs=104.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||+|||+|++|+++|+.++ +.|. |+||||.....|+|..++|.++......++.. .+++++...- .
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa-~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e--------~~~~d~~~~~--~ 69 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALA-DQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSID--------SHVEDTLAAG--A 69 (488)
T ss_pred CccEEEECccHHHHHHHHHHH-hCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHH--------HHHHHHHHhc--C
Confidence 579999999999999999998 5887 99999997767777666666654432222211 1122221110 0
Q ss_pred CCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCccCCcceEEEeCCCceecHHHH
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMVGEDSRAAFLPYDSQLDAMLA 239 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~g~~~p~~~ 239 (495)
+. .....+ ..-.+...+.++++.+.|+++......+.. ..+. .....-++.. +......+
T Consensus 70 ~~--------~d~~~v-----~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~r~~~~--~~~~G~~l 130 (488)
T TIGR00551 70 GI--------CDREAV-----EFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREG----GHSYRRILHA--ADATGREV 130 (488)
T ss_pred Cc--------CCHHHH-----HHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCC----CcCCCeEEEe--CCCCHHHH
Confidence 00 000000 001112223455666677765432111100 0000 0111112221 12245678
Q ss_pred HHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC-C--eeeecCeEEEccCcchH
Q 011027 240 VAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK-N--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 240 ~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~-g--~~~~a~~VV~A~G~~s~ 301 (495)
++.|.+.+++.. ++++++++.|++|..+ ++++.+|...+ + ..+.++.||+|+|.++.
T Consensus 131 ~~~L~~~~~~~~---gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHP---NIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcC---CcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 888888777631 2799999999999865 56676665433 2 35567999999999875
No 59
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.22 E-value=3.3e-10 Score=117.87 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=59.3
Q ss_pred ceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 223 SRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 223 ~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+++++|.+|+ ..+++.|.+.+++.| ++++++++|++|..+ ++++++|.+.+|+.+.+|.||+|++.+..
T Consensus 218 ~~g~~~~~gG~---~~l~~~L~~~~~~~G----~~i~~~~~V~~I~~~--~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 218 YGGINYPKGGV---GQIAESLVKGLEKHG----GQIRYRARVTKIILE--NGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred cceEecCCChH---HHHHHHHHHHHHHCC----CEEEeCCeeeEEEec--CCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 46788999888 578999999998886 699999999999876 57788999988876778999999998754
No 60
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.22 E-value=2.4e-10 Score=119.58 Aligned_cols=183 Identities=19% Similarity=0.166 Sum_probs=102.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||+|||+|+||+++|++++ .|.+|+||||.....|+|..++|.++......++.. .+++++.+.- .
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~--~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e--------~~~~d~~~~g--~ 76 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP--SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPK--------LHYEDTLKAG--A 76 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh--cCCCEEEEEccCCCCCchhhhcccceecccCCCCHH--------HHHHHHHHhc--C
Confidence 689999999999999999984 499999999987766667666665543332222211 1122222110 0
Q ss_pred CCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecH
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA 236 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p 236 (495)
+. .+++. .+...+.++++.+.|+++..-+.. .. ..+. . .....-.+...+. ..
T Consensus 77 ---------~~--------~d~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~-~~-~~~~-~-g~s~~r~~~~~d~--~G 133 (553)
T PRK07395 77 ---------GL--------CDPEAVRFLVEQAPEAIASLVEMGVAFDRHGQH-LA-LTLE-A-AHSRPRVLHAADT--TG 133 (553)
T ss_pred ---------CC--------CCHHHHHHHHHHHHHHHHHHHhcCCeeecCCCc-ee-eecc-c-ccccCeEEEeCCC--Ch
Confidence 00 01111 112233445666678776432110 00 0000 0 0011111222110 12
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-CCe--eeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-~g~--~~~a~~VV~A~G~~s~ 301 (495)
..++..|.+.+.+.. ++.+++++.|++|..+++++++.+|... +|. .+.++.||+|||.+..
T Consensus 134 ~~i~~~L~~~~~~~~---gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 134 RAIVTTLTEQVLQRP---NIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHHHHHHHhhcC---CcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 457778877765431 2799999999999875323677777543 443 3567999999998643
No 61
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.21 E-value=4.4e-09 Score=106.50 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHh
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDL 307 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l 307 (495)
.+.+.|.+.+.+.. +++++++++|+++..+ ++ .+.|++.+|..+.+|.||.|.|.++. +.+.+
T Consensus 113 ~l~~~l~~~~~~~~---g~~~~~~~~v~~i~~~--~~-~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~ 175 (395)
T PRK05732 113 DVGQRLFALLDKAP---GVTLHCPARVANVERT--QG-SVRVTLDDGETLTGRLLVAADGSHSA-LREAL 175 (395)
T ss_pred HHHHHHHHHHhcCC---CcEEEcCCEEEEEEEc--CC-eEEEEECCCCEEEeCEEEEecCCChh-hHHhh
Confidence 45566666554432 2688899999998764 33 45688877766778999999999875 54543
No 62
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=2.5e-10 Score=120.53 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=104.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC---CCCchHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR---TPGSEIWDLALRSNKLWKMLADSL 157 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 157 (495)
++||+|||+|+||+++|+.++ +.|.+|+||||.....++|..++|.+..... ..++.. . ++......
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa-~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e-~-------~~~d~~~~- 72 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAA-EAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPW-I-------HFDDTVYG- 72 (589)
T ss_pred CccEEEECchHHHHHHHHHHH-HcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHH-H-------HHHHHHHh-
Confidence 479999999999999999998 5899999999987767777777666654322 112111 1 11111110
Q ss_pred HhcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCc
Q 011027 158 RDQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g 232 (495)
. .++ .+++. .+...+.++++.+.|+++.....-.. ...+. .....-.++. +
T Consensus 73 g-~~~-----------------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~R~~~~--~ 128 (589)
T PRK08641 73 G-DFL-----------------ANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFG----GTLHHRTAFA--G 128 (589)
T ss_pred c-CCc-----------------CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccC----Ceeccccccc--C
Confidence 0 000 01111 11222334556667776532110000 00000 0000001111 1
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CCe--eeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g~--~~~a~~VV~A~G~~s~ 301 (495)
-.....++..|.+.+++.+..++++++.++.++++..++ ++++.+|... +++ .+.++.||+|||.+..
T Consensus 129 ~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 129 ATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred CCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 123456788888777665433336788999999998742 5778887653 343 4568999999999775
No 63
>PRK10015 oxidoreductase; Provisional
Probab=99.20 E-value=6.9e-10 Score=112.93 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
.-..+-+.|.+.+++.| +.++.+++|+++..+ ++++..+.+.+ ..+.++.||+|+|..+
T Consensus 106 ~R~~fd~~L~~~a~~~G----v~i~~~~~V~~i~~~--~~~v~~v~~~~-~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 106 LRNRLDPWLMEQAEQAG----AQFIPGVRVDALVRE--GNKVTGVQAGD-DILEANVVILADGVNS 164 (429)
T ss_pred ehhHHHHHHHHHHHHcC----CEEECCcEEEEEEEe--CCEEEEEEeCC-eEEECCEEEEccCcch
Confidence 33456777888777765 688999999998875 45565566544 4456799999999865
No 64
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.20 E-value=3.1e-09 Score=107.38 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=46.2
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
++...+.+.|.+.+.+.. +++++++++|+++..+ ++ .+.|.+.+|..+.+|.||.|.|.++.
T Consensus 109 i~r~~l~~~L~~~~~~~~---gv~i~~~~~v~~i~~~--~~-~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 109 VENRVLQLALWQALEAHP---NVTLRCPASLQALQRD--DD-GWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred EEcHHHHHHHHHHHHcCC---CcEEEcCCeeEEEEEc--CC-eEEEEECCCCEEEeCEEEEeCCCCch
Confidence 444567778877766541 2688889999998764 23 46777777766778999999999985
No 65
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.20 E-value=2.4e-10 Score=118.74 Aligned_cols=180 Identities=20% Similarity=0.187 Sum_probs=102.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||+|||+|+||+++|.+++ + |.+|+||||.....|+|..++|.+.......++.. .++.++...- .
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~-~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e--------~~~~d~~~~g--~ 70 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC-H-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPN--------DHFEDTLVAG--C 70 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh-c-CCCEEEEeccCCCCCCchhcCccceecccCCCCHH--------HHHHHHHHhc--c
Confidence 589999999999999999985 4 89999999987766777666665654332223211 1122221110 0
Q ss_pred CCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceec
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
+. .+++. .+...+.++++.+.|+++..-..... ...+. .....-.++. .+...
T Consensus 71 -------------~~----~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~r~~~~-~gd~~ 128 (510)
T PRK08071 71 -------------HH----NNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEG----AHRKRRILHA-GGDAT 128 (510)
T ss_pred -------------Cc----CCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccCc----CccCCeEEec-CCCCc
Confidence 00 01111 11222334555667776532100000 00000 0011112222 12334
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC--CCe--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS--KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~--~g~--~~~a~~VV~A~G~~s~ 301 (495)
+..+++.|.+.++ .+ +++++++.|++|..+ ++++.++.+. +|+ .+.++.||+|||.++.
T Consensus 129 g~~i~~~L~~~~~-~g----V~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 129 GKNLLEHLLQELV-PH----VTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHHh-cC----CEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 5678888887665 23 799999999999865 5667776653 332 4567999999999765
No 66
>PLN02463 lycopene beta cyclase
Probab=99.20 E-value=2e-09 Score=109.41 Aligned_cols=62 Identities=6% Similarity=-0.041 Sum_probs=46.8
Q ss_pred ceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 232 g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+.++...+.+.|.+.+.+.| ++++ .++|+++... ++ .+.|++.+|..+.++.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~G----V~~~-~~~V~~I~~~--~~-~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANG----VQFH-QAKVKKVVHE--ES-KSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcC----CEEE-eeEEEEEEEc--CC-eEEEEECCCCEEEcCEEEECcCCCcC
Confidence 35677788888888887654 4554 5789998875 33 36788888876778999999998764
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.20 E-value=4.3e-10 Score=105.90 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=48.4
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-----------CCeeeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-----------KNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-----------~g~~~~a~~VV~A~G~~s~ 301 (495)
.+++..++..|.+.+.+.| ++++++++|+++..++ +++++++.+. +...+.++.||+|+|+++.
T Consensus 100 ~vd~~~l~~~L~~~A~~~G----v~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAG----AKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred eccHHHHHHHHHHHHHHcC----CEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 3567889999998888876 6899999999998752 3366666542 1235667999999999886
No 68
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=3.5e-10 Score=119.33 Aligned_cols=186 Identities=19% Similarity=0.132 Sum_probs=103.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC--CCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR--TPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||+|+||+++|+.++ +.|.+|+||||..+..|.|..++|.+..... ..++.. . ++.+..+.-
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa-~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e-~-------~~~D~~~~g- 76 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQIS-QSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWE-W-------HMYDTVKGS- 76 (588)
T ss_pred ccCEEEECccHHHHHHHHHHH-HcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHH-H-------HHHHHHHHh-
Confidence 589999999999999999998 5899999999987666666555555533211 112211 1 112211110
Q ss_pred hcCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccC---CcceEEEeCC
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVG---EDSRAAFLPY 230 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~---~~~~~~~~~~ 230 (495)
.++ .+++ -.+...+.++++.++|+++........ ...+..-... ....-.++..
T Consensus 77 -~~~-----------------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~ 138 (588)
T PRK08958 77 -DYI-----------------GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAA 138 (588)
T ss_pred -CCC-----------------CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecC
Confidence 000 0111 112233445566677877642111000 0001000000 0001111111
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+ -....++..|.+.+.+.+ +.+++++.+++|..++ ++++.+|.. .+|+ .+.++.||+|||.+..
T Consensus 139 ~--~~G~~i~~~L~~~~~~~g----i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 139 D--RTGHALLHTLYQQNLKNH----TTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred C--CCHHHHHHHHHHHhhhcC----CEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 1 112467888887776544 7899999999998742 577888764 3453 4567999999999775
No 69
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.19 E-value=5.1e-10 Score=118.62 Aligned_cols=190 Identities=17% Similarity=0.119 Sum_probs=105.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC-CC-CchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR-TP-GSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||||+||+++|++++ +.|.+|+||||.....++|..++|.+..... .+ ++.. . ++.+....-
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa-~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e--~------~~~D~~~~g- 98 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLV-ELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWR--W------HAYDTVKGS- 98 (617)
T ss_pred ccCEEEECccHHHHHHHHHHH-HcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHH--H------HHHHHHHHh-
Confidence 689999999999999999998 5899999999987766666666666654322 11 2111 1 111111110
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCccC----CcceEEEeCCCce
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMVG----EDSRAAFLPYDSQ 233 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~~----~~~~~~~~~~~g~ 233 (495)
.++ . .+ .. -..-.+...+.++++.++|+++......... ..+...... ....-..+..+
T Consensus 99 -~~~-----~--d~-~l-----v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d-- 162 (617)
T PTZ00139 99 -DWL-----G--DQ-DA-----IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAAD-- 162 (617)
T ss_pred -CCC-----C--CH-HH-----HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCC--
Confidence 000 0 00 00 0001122334445666778876542110010 001000000 00000111111
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
-....+++.|.+.+.+.| ++++.++.+++|..++ ++++.+|.. .+|+ .+.|+.||+|||.+..
T Consensus 163 ~tG~~i~~~L~~~a~~~g----v~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 163 RTGHAMLHTLYGQSLKYD----CNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred CcHHHHHHHHHHHHHhCC----CEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 023468888888887765 7999999999998732 567877753 3553 5568999999998764
No 70
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.19 E-value=6.5e-10 Score=113.20 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=99.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||||||+|.+|+++|+.+ . .|.+|+||||.....+.|..++|.+..... .+. . ..+++++... ..
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a-~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~-~d~-~-------~~~~~d~~~~-g~- 70 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNL-R-KDLKILMVSKGKLNECNTYLAQGGISVARN-KDD-I-------TSFVEDTLKA-GQ- 70 (433)
T ss_pred cccEEEECchHHHHHHHHHh-c-cCCCEEEEecCCCCCCchHHHhHhheeCCC-CCC-H-------HHHHHHHHHH-hC-
Confidence 68999999999999999997 4 699999999987766666656665543211 111 1 1122222111 00
Q ss_pred CCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecH
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDA 236 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p 236 (495)
+. .+++ -.+...+.++++.++|+++..-.. .. . +.... .....-.+.+.+ ...
T Consensus 71 ---------~~--------~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~-~~-~-~~~~g-~~~~~r~~~~~~--~~g 127 (433)
T PRK06175 71 ---------YE--------NNLEAVKILANESIENINKLIDMGLNFDKDEK-EL-S-YTKEG-AHSVNRIVHFKD--NTG 127 (433)
T ss_pred ---------CC--------CCHHHHHHHHHHHHHHHHHHHHcCCccccCCC-ce-e-eeccC-ccccCeEEecCC--CCh
Confidence 00 0111 111222334555666765432110 00 0 00000 000111222221 123
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE-cCCCe--eeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ-TSKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~-~~~g~--~~~a~~VV~A~G~~s~ 301 (495)
..+++.|.+.+++.. +++++++++|++|..+ ++++++|. ..++. .+.++.||+|||.+..
T Consensus 128 ~~l~~~L~~~~~~~~---gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 128 KKVEKILLKKVKKRK---NITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHHhcC---CCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 567888887765431 2799999999999865 56677654 22332 4567999999998653
No 71
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.18 E-value=5.2e-10 Score=117.19 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=43.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeee
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWM 130 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~ 130 (495)
+.++||||||+| +|+++|..++ +.|.+|+||||.....|+|..++|.+|.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~-~~G~~v~v~Ek~~~~GG~~~~~gG~~~~ 63 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAH-ELGLSVLIVEKSSYVGGSTARSGGAFWL 63 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHH-HCCCcEEEEecCCCCcCcccCcCCCEec
Confidence 347999999999 8999999998 5999999999987778888888887764
No 72
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=3.9e-10 Score=118.59 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=101.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC---CCCchHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR---TPGSEIWDLALRSNKLWKMLADSL 157 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 157 (495)
++||+|||+|++|+++|+.++ +.|.+|+||||.....+.|...+|.++.... .++... +. ++......
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aa-e~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~-e~------~~~d~~~~- 75 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIA-SAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNP-DY------MTYDTVKG- 75 (566)
T ss_pred cCcEEEECccHHHHHHHHHHH-HCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccH-HH------HHHHHHHh-
Confidence 689999999999999999998 5899999999986656666555555542111 111111 10 11111110
Q ss_pred HhcCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCc
Q 011027 158 RDQGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g 232 (495)
. . +. .+++ -.+...+.++++.++|+++..-..... ...++ .....-.++..+
T Consensus 76 g-~---------~~--------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~r~~~~~~- 132 (566)
T PRK06452 76 G-D---------YL--------VDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFG----GQTYPRTRFVGD- 132 (566)
T ss_pred h-c---------cC--------CCHHHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCc----CccCCeeEecCC-
Confidence 0 0 00 0111 112223344556667776543111000 00110 000111111111
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CCe--eeecCeEEEccCcch
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KNT--LYSKKAIVVAAGCWS 300 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g~--~~~a~~VV~A~G~~s 300 (495)
-....+++.|.+.+.+.| +.+++++.+++|..+ ++++.+|... +++ .+.++.||+|||.+.
T Consensus 133 -~~G~~i~~~L~~~~~~~g----v~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 133 -KTGMALLHTLFERTSGLN----VDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred -CCHHHHHHHHHHHHHhCC----CEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 113467788887776654 799999999999986 6788887643 332 456799999999876
No 73
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=7.9e-10 Score=116.95 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=103.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||||++|+++|++++ +.|.+|+||||..+..+.|..++|.+...... .++. +.. +.+....-
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa-~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~--e~~------~~d~~~~g- 81 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMA-EAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDW--RWH------MYDTVKGS- 81 (598)
T ss_pred ccCEEEECccHHHHHHHHHHH-HcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCH--HHH------HHHHHHhc-
Confidence 689999999999999999998 58999999999876666666666655433221 1211 110 11111100
Q ss_pred hcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccC----CcceEEEeCCCce
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVG----EDSRAAFLPYDSQ 233 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~----~~~~~~~~~~~g~ 233 (495)
.++ .... .-..-.+...+.++++.++|+++........ ...++..... ....-.++..+
T Consensus 82 -~~~---------~d~~----lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d-- 145 (598)
T PRK09078 82 -DWL---------GDQD----AIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAAD-- 145 (598)
T ss_pred -cCC---------CCHH----HHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCC--
Confidence 000 0000 0000111222334455667776543211000 0001000000 00001111111
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchHH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~~ 302 (495)
-....++..|.+.+.+.| +++++++.|++|..++ ++++.+|.. .+|+ .+.++.||+|||.+...
T Consensus 146 ~tG~~i~~~L~~~~~~~g----i~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 146 RTGHAILHTLYQQSLKHN----AEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred CCHHHHHHHHHHHHhhcC----CEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 112467888888777654 7999999999998752 367887763 3553 55679999999997653
No 74
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.18 E-value=3.8e-10 Score=119.24 Aligned_cols=185 Identities=19% Similarity=0.129 Sum_probs=104.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC--CCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR--TPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||||++|+++|+++++ . .+|+|+||..+..++|+.++|.+..... ..++.. . ++......
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~-~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e--~------~~~d~~~~-- 72 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP-R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWE--W------HTFDTVKG-- 72 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh-C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHH--H------HHHHHHHh--
Confidence 6899999999999999999974 5 8999999987777777766665543222 111111 0 11111110
Q ss_pred hcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcC-hhhHHHhCCCCccC----CcceEEEeC
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLS-SSDLLQAEPELMVG----EDSRAAFLP 229 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~p~l~~~----~~~~~~~~~ 229 (495)
+. + + .+++. .+...+.++++.++|+++.... .......++..... ......+..
T Consensus 73 --g~-----------~---~-~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~ 135 (583)
T PRK08205 73 --GD-----------Y---L-VDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAA 135 (583)
T ss_pred --hc-----------C---C-CCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccC
Confidence 00 0 0 01111 1123344566677788764321 11111111111000 000111111
Q ss_pred CCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecC--CCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 230 YDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS--TGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 230 ~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~--~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+ .....+++.|.+.+++.| +++++++.|++|..+++ ++++.++.. .+++ .+.++.||+|||.+..
T Consensus 136 -~--~tG~~i~~~L~~~~~~~g----v~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 136 -D--RTGHMILQTLYQNCVKHG----VEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred -C--CCHHHHHHHHHHHHHhcC----CEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 1 123567888888777654 79999999999987521 167777753 3453 4567999999999764
No 75
>PRK06834 hypothetical protein; Provisional
Probab=99.17 E-value=3.9e-09 Score=109.16 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
..+.+.|.+.+++.| +.++++++|+++..+ ++ .+.+++.+|..+.+|.||.|.|.++. +-+.
T Consensus 100 ~~le~~L~~~l~~~g----v~i~~~~~v~~v~~~--~~-~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~ 161 (488)
T PRK06834 100 NHIERILAEWVGELG----VPIYRGREVTGFAQD--DT-GVDVELSDGRTLRAQYLVGCDGGRSL-VRKA 161 (488)
T ss_pred HHHHHHHHHHHHhCC----CEEEcCCEEEEEEEc--CC-eEEEEECCCCEEEeCEEEEecCCCCC-cHhh
Confidence 346667777776654 689999999999875 33 35566667766678999999999884 4343
No 76
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.17 E-value=1e-09 Score=115.99 Aligned_cols=180 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
||+|||||++|+++|+.++ +.|.+|+||||.....+.|...+|.+...... ++ ...+. ++.+.... . .
T Consensus 1 DVlVVG~G~AGl~AA~~aa-e~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~-d~~e~------~~~d~~~~-~-~ 70 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAA-KAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPD-DSWEW------HAYDTVKG-S-D 70 (566)
T ss_pred CEEEECccHHHHHHHHHHH-HCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCC-ccHHH------HHHHHHHH-h-C
Confidence 7999999999999999998 58999999999876555665555555433221 11 11111 11111110 0 0
Q ss_pred CCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCccCCcceEEEeCCCceec
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
+. .+++. .+...+.++++.+.|+++......... ..+.. .......+..+ ..
T Consensus 71 ~~-----------------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg---~~~~r~~~~~~---~~ 127 (566)
T TIGR01812 71 YL-----------------ADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGG---HSKDRTCYAAD---KT 127 (566)
T ss_pred CC-----------------CCHHHHHHHHHHHHHHHHHHHHcCCcceecCCCcEeeccccc---cccCeeEECCC---CC
Confidence 00 01111 111223345566677765432111110 00000 00011122111 12
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
...++..|.+.+++.| +++++++.|++|..+ ++++.+|.. .+|+ .+.++.||+|||.++.
T Consensus 128 G~~i~~~L~~~~~~~g----v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 128 GHALLHTLYEQCLKLG----VSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHHcC----CEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 3457778887777654 799999999999876 567776653 3553 4667999999999764
No 77
>PRK12839 hypothetical protein; Provisional
Probab=99.17 E-value=4.4e-10 Score=118.06 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=49.2
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc--CCCe--eeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT--SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~--~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+++..++..|.+.+++.| ++++.+++|++|..++ ++++.+|.. .++. +.+++.||+|||.++.
T Consensus 211 ~~g~~l~~~L~~~a~~~G----v~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 211 VNGTALTGRLLRSADDLG----VDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred ccHHHHHHHHHHHHHHCC----CEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 467788999998888765 7999999999997642 567888764 3443 4566899999999886
No 78
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.16 E-value=5.4e-10 Score=118.48 Aligned_cols=187 Identities=17% Similarity=0.115 Sum_probs=104.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccC--CCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHR--TPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||+|+||+++|++++ +.|.+|+||||..+..++|..++|.+..... .+++.. . ++.+..+.-
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aa-e~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e--~------~~~Dt~~~g- 119 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLS-EHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWR--W------HMYDTVKGS- 119 (635)
T ss_pred ecCEEEECccHHHHHHHHHHH-hcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHH--H------HHHHHHHhh-
Confidence 589999999999999999998 5899999999987766676666666644322 122211 1 111111100
Q ss_pred hcCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCC----cceEEEeC
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGE----DSRAAFLP 229 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~----~~~~~~~~ 229 (495)
.++ .+++ -.+...+.++++.++|+++..-..-.+ ...+....... ...-..+.
T Consensus 120 -~~~-----------------~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~ 181 (635)
T PLN00128 120 -DWL-----------------GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA 181 (635)
T ss_pred -CCC-----------------CCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeecc
Confidence 000 0111 111222344556667776642110000 00000000000 00001111
Q ss_pred CCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchHH
Q 011027 230 YDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 230 ~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~~ 302 (495)
. --....+++.|.+.+.+.| ++++.++.+++|..++ ++++.+|.. .+|+ .+.++.||+|||.+...
T Consensus 182 ~--d~tG~~i~~~L~~~a~~~g----v~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 182 A--DRTGHAMLHTLYGQAMKHN----TQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred C--CCCHHHHHHHHHHHHHhCC----CEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 1 1123467888888777654 7999999999988652 467777764 3453 55689999999997653
No 79
>PLN02815 L-aspartate oxidase
Probab=99.16 E-value=4.2e-10 Score=118.20 Aligned_cols=183 Identities=21% Similarity=0.194 Sum_probs=102.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||+|||+|++|+++|+.++ +.| +|+||||.....|+|..++|.++......++.. .+++++... . .
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aa-e~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e--------~~~~d~~~~-g-~ 96 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVA-EYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVE--------SHMRDTIVA-G-A 96 (594)
T ss_pred ccCEEEECccHHHHHHHHHHh-hCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHH--------HHHHHHHHh-c-c
Confidence 689999999999999999998 588 999999988777777767665543322222211 112222111 0 0
Q ss_pred CCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceec
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
+. .+++ -.+...+.++++.++|+++..-..-.. ...+. .....-+++.. -..
T Consensus 97 ~~-----------------~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~g----g~s~~R~~~~~--d~t 153 (594)
T PLN02815 97 FL-----------------CDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREG----GHSHHRIVHAA--DMT 153 (594)
T ss_pred CC-----------------CcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCC----CCccCceeecC--CCC
Confidence 00 0111 111223344556667777542210000 00000 00011111111 112
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCC--cEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTG--EVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~--~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
...++..|.+.+++.. ++++++++.+++|..+++++ ++.++.. .+|. .+.++.||+|||.+..
T Consensus 154 G~~i~~~L~~~~~~~~---~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 154 GREIERALLEAVKNDP---NITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHHHHHHHHhcC---CCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 3467788887776542 37899999999998753223 2667653 3453 4567999999998764
No 80
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.16 E-value=1.5e-09 Score=101.98 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC-----------CeeeecCeEEEccCcchH
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK-----------NTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~-----------g~~~~a~~VV~A~G~~s~ 301 (495)
+...+++.|.+.+.+.| ++++.++.|+++..+++..++.+|.++. ...+.++.||.|||+.+.
T Consensus 98 ~~~el~~~L~~~a~e~G----V~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 98 DSAEFISTLASKALQAG----AKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred eHHHHHHHHHHHHHHcC----CEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 44578888888888776 6899999999998763212577766531 235668999999998764
No 81
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=6.5e-10 Score=116.73 Aligned_cols=48 Identities=31% Similarity=0.551 Sum_probs=42.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIW 129 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~ 129 (495)
++||+|||+|++|+++|+.|+ +.|.+|+||||....+|+|..++|.++
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a-~~G~~v~liEk~~~~gG~~~~s~g~~~ 53 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAA-DSGLEPLIVEKQDKVGGSTAMSGGVLW 53 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHH-HCCCcEEEEecCCCCCceeceecceee
Confidence 689999999999999999998 589999999998777788888887764
No 82
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=6.9e-10 Score=117.18 Aligned_cols=182 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
++||+|||||++|+++|+++++ . |.+|+||||.....+.|...+|.+...... +.... +. ++......
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~-~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~-e~------~~~d~~~~ 74 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKR-LDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSW-EA------HAFDTVKG 74 (575)
T ss_pred cccEEEECccHHHHHHHHHHHH-hcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCH-HH------HHHHHHHH
Confidence 5899999999999999999984 5 589999999876455554444444332211 11111 10 11111110
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCccCCcceEEEeCCC
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMVGEDSRAAFLPYD 231 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~ 231 (495)
. . + +. +++. .+.....++++.++|+++......... ..+. .....-..++.+
T Consensus 75 -~-~---------~-------l~-d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~r~~~~~~ 131 (575)
T PRK05945 75 -S-D---------Y-------LA-DQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFG----GHSHNRTCYAAD 131 (575)
T ss_pred -h-C---------C-------CC-CHHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeecccc----ccccCeeEecCC
Confidence 0 0 0 00 1111 112223345566678776543211110 0000 000111122211
Q ss_pred ceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCCe--eeecCeEEEccCcchH
Q 011027 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 232 g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g~--~~~a~~VV~A~G~~s~ 301 (495)
. ....++..|.+.+++.| +++++++.|++|..+ ++++.++. ..+++ .+.++.||+|||.++.
T Consensus 132 ~--tG~~i~~~L~~~~~~~g----i~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 132 K--TGHAILHELVNNLRRYG----VTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred C--ChHHHHHHHHHHHhhCC----CEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 1 12467888888777654 799999999999875 56666654 34553 4678999999999764
No 83
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.15 E-value=8.1e-10 Score=116.70 Aligned_cols=49 Identities=35% Similarity=0.538 Sum_probs=43.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWM 130 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~ 130 (495)
++||+|||+|++|+++|+.++ ++|.+|+||||.....|+|..+.|.++.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa-~~G~~v~llEk~~~~gG~~~~s~g~~~~ 57 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITAR-KLGLDVVVLEKEPVFGGTTAFSGGVLWI 57 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HcCCeEEEEecCCCCCCccceeCcEecc
Confidence 689999999999999999998 5999999999998778888888887654
No 84
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.15 E-value=2.5e-09 Score=108.35 Aligned_cols=64 Identities=8% Similarity=-0.075 Sum_probs=47.9
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~ 302 (495)
.++...+.+.|.+.+.+.+ +++++++++|+++..+ ++ .+.+.+.+|+.+.+|.||.|.|.++.-
T Consensus 105 ~i~r~~l~~~L~~~~~~~~---~v~~~~~~~v~~i~~~--~~-~v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHP---LVEFRTSTHVVGIEQD--GD-GVTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEEHHHHHHHHHHHHHhcC---CcEEEeCCEEEEEecC--CC-ceEEEEcCCCEEecCEEEECCCcChHH
Confidence 3455678888888776653 3688999999999764 33 355777778767789999999998864
No 85
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.15 E-value=7.4e-10 Score=117.31 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=96.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCcCCCCcccCCcce--eeeccCCCCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVVPCSGATGAGQGY--IWMVHRTPGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~~~~gaS~~~~g~--i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
++||+|||||+||+++|+.+++ . |.+|+||||.....+.+ ..+|. +.......++. . ++++.+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae-~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~-e-------~~~~d~~~~ 80 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKE-WAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETP-E-------DYVRYVRKD 80 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHH-hCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCH-H-------HHHHHHHHh
Confidence 5899999999999999999984 6 99999999986532222 22231 21111111111 1 111221111
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCc
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g 232 (495)
. . +. .+++ -.+...+.++++...|+++....... ..+ .+-.. .
T Consensus 81 ~--~-------------~~----~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~---~~~--------~g~~~---~ 127 (608)
T PRK06854 81 L--M-------------GI----VREDLVYDIARHVDSVVHLFEEWGLPIWKDENGK---YVR--------RGRWQ---I 127 (608)
T ss_pred c--c-------------CC----CCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCC---ccc--------cCCcc---C
Confidence 0 0 00 0111 11222344555666787664211000 000 00000 0
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCCe--eeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g~--~~~a~~VV~A~G~~s~ 301 (495)
..++..+.+.|.+.+++.+ +++++++++|++|..+ ++++++|. +.+++ .+.++.||+|||.++.
T Consensus 128 ~~~G~~~~~~L~~~a~~~g---gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 128 MINGESYKPIVAEAAKKAL---GDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred CCChHHHHHHHHHHHHhcC---CCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 1345567778877776643 3799999999999875 46676663 33453 5678999999999875
No 86
>PRK09126 hypothetical protein; Provisional
Probab=99.15 E-value=6.9e-09 Score=104.95 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
..+.+.|.+.+.+.. ++.++++++|+++..+ ++ .+.|.+++|+.+.+|.||.|.|.++.
T Consensus 110 ~~l~~~l~~~~~~~~---g~~i~~~~~v~~~~~~--~~-~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 110 HLIRRAAYEAVSQQD---GIELLTGTRVTAVRTD--DD-GAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHHHhhCC---CcEEEcCCeEEEEEEc--CC-eEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 356666666654321 2689999999999764 33 35677777877778999999998764
No 87
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.15 E-value=3.1e-08 Score=99.14 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=105.9
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhccc
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRETE 312 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~~~ 312 (495)
.++...+-+.+.+.+...+ .++.++.|++|... +..+.|.+.+|..+.++.||.|.|..+. .
T Consensus 83 ~i~~~~f~~~l~~~~~~~~-----~~~~~~~V~~i~~~---~~~~~v~~~~g~~i~a~~VvDa~g~~~~---~------- 144 (374)
T PF05834_consen 83 MIDRADFYEFLLERAAAGG-----VIRLNARVTSIEET---GDGVLVVLADGRTIRARVVVDARGPSSP---K------- 144 (374)
T ss_pred EEEHHHHHHHHHHHhhhCC-----eEEEccEEEEEEec---CceEEEEECCCCEEEeeEEEECCCcccc---c-------
Confidence 5677788888888776322 67788999999875 2256678888877778999999996544 1
Q ss_pred cccccceeecceeEEEEeecCccccccccccccccccccCCCCCCCccccc-ceeeeeeeeeeccccEEecccccccCCC
Q 011027 313 IVLDIPVKPRKGHLLVLENFNSLKLNHASMEAGYVGHHDLTLHPGQVNHGQ-ILSISMTATTDVIGNLVLGSSRQFAGFN 391 (495)
Q Consensus 313 ~~~~~~l~~~rgq~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~iG~t~~~~~~~ 391 (495)
.....++...|..+.++.+. ........-+ |. .+.. ...-++|..|-..++.+|..|.--. .
T Consensus 145 -~~~~~~Q~f~G~~v~~~~~~-f~~~~~~lMD-~r------------~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~--~ 207 (374)
T PF05834_consen 145 -ARPLGLQHFYGWEVETDEPV-FDPDTATLMD-FR------------VPQSADGPSFLYVLPFSEDRALVEETSFSP--R 207 (374)
T ss_pred -ccccccceeEEEEEeccCCC-CCCCceEEEE-ec------------ccCCCCCceEEEEEEcCCCeEEEEEEEEcC--C
Confidence 11234566677777665431 1122221100 11 0001 1111234446667788887764222 1
Q ss_pred ccccHHHH-HHHHHHHHhhcCCcccccccccccCceeeeeeccCCCCCCc-EEeecCCCCcEEEEec--------CCCCC
Q 011027 392 TEVEQTII-DRIWKRAAEFYPKLRDLCLADFISNRKVRIGLRPYMPDGKP-VIGPVPGLSKVFLATG--------HEGLG 461 (495)
Q Consensus 392 ~~~~~~~~-~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~g~r~~t~D~~P-iig~~~~~~~l~~~~G--------~g~~G 461 (495)
...+.+.. +.+.+++++ -.+...++.+ .-.|+-|++....+ -.+ ++ ++..| -.|.+
T Consensus 208 ~~~~~~~~~~~l~~~l~~--~g~~~~~i~~------~E~G~IPm~~~~~~~~~~-----~~-v~~iG~agG~v~PsTGYs 273 (374)
T PF05834_consen 208 PALPEEELKARLRRYLER--LGIDDYEILE------EERGVIPMTTGGFPPRFG-----QR-VIRIGTAGGMVKPSTGYS 273 (374)
T ss_pred CCCCHHHHHHHHHHHHHH--cCCCceeEEE------eecceeecccCCCccccC-----CC-eeeEEccccCCCCcccHH
Confidence 12333333 344444444 2333333322 35688888532221 111 11 11111 12346
Q ss_pred hhhhHHHHHHHHHHHhC
Q 011027 462 LSLALGTAELVADMVLT 478 (495)
Q Consensus 462 ~~~ap~~a~~la~~i~g 478 (495)
|..+--.|+.+|+.+..
T Consensus 274 ~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 274 FARIQRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66777778888887774
No 88
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.1e-09 Score=115.21 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=41.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc--CCCCcccCCcceeee
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV--PCSGATGAGQGYIWM 130 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~--~~~gaS~~~~g~i~~ 130 (495)
.++||||||+|++|+++|+.++ +.|.+|+||||.. ...|.|..++|.++.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa-~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~ 54 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELA-DAGKRVLLLDQENEANLGGQAFWSLGGLFL 54 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCCCCCCCCceeccCCceec
Confidence 3689999999999999999998 5999999999986 455666656665543
No 89
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=1.7e-09 Score=115.05 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc-CCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHHH
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV-PCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~-~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
.++||+|||||++|+++|+.++ +.|.+|+||||.. +..++|..++|.+...... +..... .++.+....
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aa-e~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~-------~~~~d~~~~ 105 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLG-ELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVY-------RLFYDTVKG 105 (640)
T ss_pred cccCEEEECccHHHHHHHHHHH-HcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHH-------HHHHHHHHh
Confidence 3689999999999999999998 5899999999864 3445554554444321110 111111 112222111
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCC--ce
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYD--SQ 233 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~--g~ 233 (495)
+- +.....+ -..-.+...+.++++.+.|+++..-..... ...++ .....-.+.+.+ |.
T Consensus 106 ----g~-------~~~d~~l----v~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~g----ghs~~R~~~~~~~tG~ 166 (640)
T PRK07573 106 ----GD-------FRAREAN----VYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFG----GAQVSRTFYARGQTGQ 166 (640)
T ss_pred ----cC-------CCCCHHH----HHHHHHHHHHHHHHHHhcCCccccCCCCceeccccC----CcccceeEeCCCCCch
Confidence 00 0000000 000111223445566667876542100000 00000 000111122211 11
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CCe--eeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g~--~~~a~~VV~A~G~~s~ 301 (495)
.--..+.+.|.+.+++.| +++++++.|++|..+ ++++.+|... +|. .+.++.||+|||.+..
T Consensus 167 ~i~~~l~~~L~~~~~~~g----V~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 167 QLLLGAYQALSRQIAAGT----VKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred hHHHHHHHHHHHHHHhcC----CEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 100112345555555543 799999999999876 5678777653 453 5668999999999765
No 90
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.13 E-value=1.4e-09 Score=115.00 Aligned_cols=186 Identities=21% Similarity=0.159 Sum_probs=101.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCC-C-CchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRT-P-GSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
.+||+|||||++|+++|..++ +.|.+|+||||.....+.|..++|.+...... + ++.. .++.+....-
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa-~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~--------~~~~dt~~~g- 81 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLA-RAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWH--------YHFYDTIKGS- 81 (591)
T ss_pred cCCEEEECccHHHHHHHHHHH-HCCCcEEEEeccCCCCCCchhccCCcccccccccccChh--------HhHHHHHHhc-
Confidence 689999999999999999998 58999999999876666666665555432211 1 1110 0111111100
Q ss_pred hcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCcc---CCcceEEEeCC
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMV---GEDSRAAFLPY 230 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~---~~~~~~~~~~~ 230 (495)
.++ .+++. .+...+..+++.++|+++......... ..+..-.. ...........
T Consensus 82 -~~~-----------------~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~ 143 (591)
T PRK07057 82 -DWL-----------------GDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAA 143 (591)
T ss_pred -CCC-----------------CCHHHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecC
Confidence 000 01111 112223345556677765432110000 00000000 00001111111
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+ -....+++.|.+.+.+.| ++++.++.+++|..++ ++++.+|.. .+|+ .+.++.||+|||.++.
T Consensus 144 ~--~tG~~l~~~L~~~~~~~g----i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 144 D--RTGHALLHTLYQQNVAAK----TQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred C--CChHHHHHHHHHHHHhcC----CEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 1 112467888888776654 7899999999998752 466777754 3453 5667999999999764
No 91
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.13 E-value=2.5e-09 Score=110.11 Aligned_cols=173 Identities=20% Similarity=0.125 Sum_probs=95.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQG 161 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 161 (495)
.||+|||||++|+++|+.++ +.|.+|+||||... .++|...+|.+.......++.. . ++.+....- .+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aa-e~G~~V~liek~~~-~~~s~~a~ggi~~~~~~~ds~e-~-------~~~d~~~~~--~~ 69 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLA-KKGFDVTIIGPGIK-KSNSYLAQAGIAFPILEGDSIR-A-------HVLDTIRAG--KY 69 (466)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCeEEEEeCCCC-CCCcHHHcCCcccccCCCCcHH-H-------HHHHHHHHh--cC
Confidence 68999999999999999998 58999999999743 3333333343322111122111 0 111111100 00
Q ss_pred CCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHH
Q 011027 162 LDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAM 237 (495)
Q Consensus 162 ~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~ 237 (495)
. .+++. .+...+.++++.+.|+++.... ... .....-.+.... ....
T Consensus 70 ~-----------------~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~------~~~----g~~~~r~~~~~~--~~G~ 120 (466)
T PRK08401 70 I-----------------NDEEVVWNVISKSSEAYDFLTSLGLEFEGNE------LEG----GHSFPRVFTIKN--ETGK 120 (466)
T ss_pred C-----------------CCHHHHHHHHHHHHHHHHHHHHcCCCcccCC------CcC----CccCCeEEECCC--CchH
Confidence 0 01110 1112233455666777653210 000 001111222111 1234
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l 303 (495)
.+++.|.+.+++.| +.++.+ .++.+..+ ++++.++.+. +..+.++.||+|||.++...
T Consensus 121 ~i~~~L~~~~~~~g----v~i~~~-~v~~l~~~--~g~v~Gv~~~-g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 121 HIIKILYKHARELG----VNFIRG-FAEELAIK--NGKAYGVFLD-GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred HHHHHHHHHHHhcC----CEEEEe-EeEEEEee--CCEEEEEEEC-CEEEEeCeEEECCCcCcCCC
Confidence 68888888887765 577655 78888764 5677777764 45566799999999988643
No 92
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=2.5e-09 Score=112.80 Aligned_cols=50 Identities=32% Similarity=0.516 Sum_probs=43.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeee
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWM 130 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~ 130 (495)
.++||||||+|++|+++|+.++ +.|.+|+||||....+|+|..+.|.++.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aa-e~G~~VivlEk~~~~gG~t~~s~G~i~~ 59 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAA-ARGLDTLVVEKSAHFGGSTALSGGGIWV 59 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHH-HCCCcEEEEEcCCCCCchHHHhCCCccc
Confidence 3689999999999999999998 5999999999998777877777776643
No 93
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.11 E-value=1.9e-09 Score=113.50 Aligned_cols=183 Identities=20% Similarity=0.192 Sum_probs=102.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
++||+|||||++|+++|+.+++. .|.+|+|+||.....+.|..++|.+.......++.. .++++....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e--------~~~~dt~~~--- 71 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLD--------EHFHDTVSG--- 71 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHH--------HHHHHHHHh---
Confidence 58999999999999999999852 268999999987766666556555532222222211 111221110
Q ss_pred cCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCcee
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQL 234 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~ 234 (495)
+- + . .+++ -.+...+.++++.++|+++........ ...++ .....-.+...+.
T Consensus 72 -g~-------~----~----~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~R~~~~~~~-- 129 (580)
T TIGR01176 72 -GD-------W----L----CEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFG----GMKKERTWFAADK-- 129 (580)
T ss_pred -cC-------C----c----CcHHHHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccC----CccCCeeeecCCC--
Confidence 00 0 0 0111 112222344556667877653211110 00111 0011112222211
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCC--eeeecCeEEEccCcchH
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKN--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g--~~~~a~~VV~A~G~~s~ 301 (495)
....+++.|.+.+.+.. ++.++.++.+++|..+ ++++.++.. .+| ..+.++.||+|||.++.
T Consensus 130 ~G~~i~~~L~~~~~~~~---~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 130 TGFHMLHTLFQTSLTYP---QIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred CHHHHHHHHHHHHHhcC---CCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 23467888887765532 3788999999999876 567776653 355 35667999999999775
No 94
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=1.6e-09 Score=113.81 Aligned_cols=186 Identities=18% Similarity=0.081 Sum_probs=99.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC-CCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP-CSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~-~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
++||+|||+|++|+++|+.+ + .|.+|+||||... .+|+|..++|.++......++.. +++.++...-
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~--------~~~~d~~~~~-- 74 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFE--------KHFEDTMKGG-- 74 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHH--------HHHHHHHHHh--
Confidence 58999999999999999998 5 8999999999754 45566666665543332222211 1112221110
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHH
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLA 239 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~ 239 (495)
. +.....+ -..-.+...+.++++.++|+++..-........ + .. .....-.+++.+ .....+
T Consensus 75 ~---------~~~d~~l----v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~-~~-g~~~~r~~~~~~--~~G~~i 136 (543)
T PRK06263 75 A---------YLNDPKL----VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQR-P-FG-GQSFNRTCYAGD--RTGHEM 136 (543)
T ss_pred c---------CCCCHHH----HHHHHHHHHHHHHHHHHcCCcceeCCCCceeec-c-cC-CeEcCeEEECCC--CCHHHH
Confidence 0 0000000 000111222334455667776542111000000 0 00 000001111111 113467
Q ss_pred HHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 240 VAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 240 ~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+..|.+.+.+.| +++++++.|++|..++ ++++.++.. .+|. .+.++.||+|||.+..
T Consensus 137 ~~~L~~~~~~~g----v~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 137 MMGLMEYLIKER----IKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHhcCC----CEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 778877776644 7999999999998762 334776653 4553 4667999999999764
No 95
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.11 E-value=1.8e-09 Score=113.94 Aligned_cols=49 Identities=35% Similarity=0.587 Sum_probs=43.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWM 130 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~ 130 (495)
++||+|||+|.+|+++|+.++ +.|.+|+||||.....|+|..++|.++.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~-~~g~~v~l~ek~~~~gg~~~~s~g~~~~ 64 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAA-IAGLKVLLVERTEYVGGTTATSAGTTWI 64 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HCCCcEEEEecCCCCCCcccccCceeec
Confidence 689999999999999999998 5999999999987778888888877754
No 96
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.11 E-value=3.2e-09 Score=111.97 Aligned_cols=182 Identities=19% Similarity=0.182 Sum_probs=101.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||||++|+++|+.+++ . |.+|+||||.....+.|..++|.+.......++.. .++.+....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~-~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e--------~~~~d~~~~-- 72 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAE-ANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFD--------YHFHDTVAG-- 72 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHH-hCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHH--------HHHHHHHHh--
Confidence 6899999999999999999984 4 58999999987766666666554432222112111 111221110
Q ss_pred hcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCce
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQ 233 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~ 233 (495)
+- +. .+++. .+...+.++++.+.|+++..-....+ ...++. ....-.+...+.
T Consensus 73 --g~-------~~--------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~~- 130 (582)
T PRK09231 73 --GD-------WL--------CEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG----MKIERTWFAADK- 130 (582)
T ss_pred --cc-------cC--------CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeeecccc----ccCCeeEecCCC-
Confidence 00 00 11111 11223344566677887643111000 000110 001111222111
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCC--eeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKN--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g--~~~~a~~VV~A~G~~s~ 301 (495)
....++..|.+.+.+.. ++.++.++.|++|..+ ++++.++. ..+| ..+.++.||+|||.++.
T Consensus 131 -~G~~i~~~L~~~~~~~~---~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 131 -TGFHMLHTLFQTSLKYP---QIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred -cHHHHHHHHHHHhhcCC---CcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 12357777777665532 3789999999999875 56676654 3455 35678999999998764
No 97
>PRK07045 putative monooxygenase; Reviewed
Probab=99.11 E-value=1.3e-08 Score=102.70 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
..+.+.|.+.+.... +++++++++|+++..++ ++.++.|++.+|+.+.+|.||-|.|..+.
T Consensus 106 ~~l~~~L~~~~~~~~---gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLP---NVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCC---CeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 356677777665432 37899999999998753 44456788888877788999999998774
No 98
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.10 E-value=2.2e-09 Score=111.86 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=37.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQG 126 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g 126 (495)
++||||||+| +|+++|++++ +.|.+|+||||.....|+|..++|
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa-~~G~~V~vlEk~~~~Gg~t~~~~g 50 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAA-REGLSVALVEATDKFGGTTAYSGG 50 (513)
T ss_pred ccCEEEECch-HHHHHHHHHH-HCCCcEEEEecCCCCCcceecCCC
Confidence 6899999999 9999999998 599999999998765666655443
No 99
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=1.4e-09 Score=112.37 Aligned_cols=67 Identities=21% Similarity=0.119 Sum_probs=55.6
Q ss_pred ceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCc
Q 011027 223 SRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGC 298 (495)
Q Consensus 223 ~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~ 298 (495)
..|+++|.+|. ..++++|.+.+++.| ++++++++|++|..+ +++..++.+.+|+.+.+|.||.+...
T Consensus 213 ~~G~~~p~GG~---~al~~aL~~~~~~~G----g~I~~~~~V~~I~v~--~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 213 SGGVFYPRGGM---GALVDALAELAREHG----GEIRTGAEVSQILVE--GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred cCCeeeeeCCH---HHHHHHHHHHHHHcC----CEEECCCceEEEEEe--CCcceEEeccccceeccceeEecCch
Confidence 35788999887 689999999999987 699999999999987 56667788888866677977777766
No 100
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=2e-09 Score=114.41 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=103.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCC--C-CchHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRT--P-GSEIWDLALRSNKLWKMLADSL 157 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~-~~~~~~l~~~~~~~~~~~~~~~ 157 (495)
++||+|||||++|+++|+.++ +.|.+|+||||.....++|..++|.+...... + ++.. . ++.+....-
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aa-e~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~-~-------~~~D~~~~g 78 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEAR-ERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQ-V-------HFRDTMRGG 78 (626)
T ss_pred eecEEEECcCHHHHHHHHHHH-HCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHH-H-------HHHHHHHHh
Confidence 689999999999999999998 59999999999877667777676655443221 1 1111 1 111111100
Q ss_pred HhcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHH-HhCCCCccCCcceEEEeCCCc
Q 011027 158 RDQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLL-QAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~p~l~~~~~~~~~~~~~~g 232 (495)
. +. .+.+. .+...+.+..+.+.|+++.......+. ..+. .....-.++..
T Consensus 79 --~---------~l--------~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g----g~~~~r~~~~~-- 133 (626)
T PRK07803 79 --K---------FL--------NNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFG----GHTYPRLAHVG-- 133 (626)
T ss_pred --c---------cC--------CcHHHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecC----CcccCeEEecC--
Confidence 0 00 01100 111222334556678776532211110 0000 00011111111
Q ss_pred eecHHHHHHHHHHHhhhh--------c-cCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCc
Q 011027 233 QLDAMLAVAYIEKGNRHF--------A-SKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGC 298 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~--------g-~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~ 298 (495)
.-....++..|.+.+.+. | -.+++.+++++.|++|..+ ++++.++.. .+++ .+.++.||+|||+
T Consensus 134 ~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 134 DRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred CCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 112346778887776654 2 0013799999999999875 566766542 3453 4677999999998
Q ss_pred chH
Q 011027 299 WSG 301 (495)
Q Consensus 299 ~s~ 301 (495)
+..
T Consensus 212 ~~~ 214 (626)
T PRK07803 212 IGK 214 (626)
T ss_pred ccC
Confidence 553
No 101
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.10 E-value=1.2e-08 Score=102.69 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+...|.+.+.+.+ +++++++++|++++.+ ++ .+.|++.+|..+.+|.||.|.|.++.
T Consensus 111 ~l~~~L~~~~~~~~---~i~i~~~~~v~~~~~~--~~-~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 111 LIQLGLWQQFAQYP---NLTLMCPEKLADLEFS--AE-GNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHhCC---CeEEECCCceeEEEEc--CC-eEEEEECCCCEEEeeEEEEecCCCch
Confidence 45556666655542 3789999999999875 33 35677888877778999999999875
No 102
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.10 E-value=9.9e-10 Score=117.05 Aligned_cols=47 Identities=30% Similarity=0.402 Sum_probs=38.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCccee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYI 128 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i 128 (495)
.+||+|||||++|+++|.+++ +.|.+|+||||.....+.|...+|.+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aa-e~G~~VivleK~~~~~s~s~~a~GGi 51 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAA-QRGLDTIVLSLVPAKRSHSAAAQGGM 51 (657)
T ss_pred eccEEEECccHHHHHHHHHHH-HcCCCEEEEeCCCCCCcchHHHhhhH
Confidence 689999999999999999998 59999999999876555555544433
No 103
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.10 E-value=9.5e-10 Score=114.41 Aligned_cols=182 Identities=18% Similarity=0.133 Sum_probs=99.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC-CCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP-CSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~-~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
++||+|||+|++|+++|++++ |.+|+||||... .+|+|..++|.++......++.. .+++++...-
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e--------~~~~d~~~~~-- 75 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPA--------LHAADTLAAG-- 75 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHH--------HHHHHHHHhh--
Confidence 689999999999999999985 469999999876 34556555665543322222211 1112221110
Q ss_pred cCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceec
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
.+. .+++ -.+...+.++++.+.|+++..-...... ..+. . .....-.+... +--.
T Consensus 76 ~g~-----------------~d~~~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~-~~~~-~-~~~~~r~~~~~-g~~~ 134 (513)
T PRK07512 76 AGL-----------------CDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLA-LGLE-A-AHSRRRIVHVG-GDGA 134 (513)
T ss_pred CCC-----------------CCHHHHHHHHHHHHHHHHHHHHhCCccccCCCCccc-cccc-c-CccCCcEEEcC-CCCC
Confidence 000 0111 1112233445566677765321100000 0000 0 00111112211 1123
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC--C-eeeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK--N-TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~--g-~~~~a~~VV~A~G~~s~ 301 (495)
+..+++.|.+.+++.+ +++++.++.|++|..+ ++++.++.+.+ + ..+.++.||+|||.+..
T Consensus 135 G~~l~~~L~~~~~~~~---gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 135 GAAIMRALIAAVRATP---SITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHHHHHHhCC---CCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 4578888888776542 2799999999998765 56777776532 2 24667999999999753
No 104
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.8e-09 Score=112.68 Aligned_cols=182 Identities=19% Similarity=0.176 Sum_probs=99.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC---ccEEEEcCCcCCCCcccCCcceeeeccCC--CCchHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD---LSVAVVDKVVPCSGATGAGQGYIWMVHRT--PGSEIWDLALRSNKLWKMLAD 155 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G---~~V~liE~~~~~~gaS~~~~g~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 155 (495)
++||+|||||++|+++|+.+++ .| .+|+||||.....+.|..++|.+...... .++... ++.....
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~-~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~--------~~~d~~~ 75 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAE-RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDL--------HAYDTVK 75 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHH-hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHH--------HHHHHHH
Confidence 6899999999999999999984 77 89999999877666666665555332221 121111 0111111
Q ss_pred HHHhcCCCCccccceEeeeeEEEecCHH----HHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCC
Q 011027 156 SLRDQGLDPLQVIGWKQTGSLLIGRTPE----ELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPY 230 (495)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~ 230 (495)
. . .++ .+++ -.+...+.++++.++|+++........ ...+. .....-..+..
T Consensus 76 ~-g-~~~-----------------~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~----g~~~~r~~~~~ 132 (577)
T PRK06069 76 G-S-DFL-----------------ADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFG----GMSFPRTTFAA 132 (577)
T ss_pred h-h-ccc-----------------CCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecC----CcccceeeEcC
Confidence 0 0 000 0111 111222334556667877643211000 00000 00011111111
Q ss_pred CceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 231 DSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 231 ~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
+. ....+++.|.+.+.+.. ++.+++++.|+++..+ ++++.++.. .+++ .+.++.||+|||.+..
T Consensus 133 d~--tG~~i~~~L~~~~~~~~---gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 133 DK--TGFYIMHTLYSRALRFD---NIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred CC--chHHHHHHHHHHHHhcC---CCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 10 12457778877665421 2789999999999875 566666542 3554 4678999999999753
No 105
>PRK07233 hypothetical protein; Provisional
Probab=99.08 E-value=1.7e-07 Score=96.16 Aligned_cols=65 Identities=12% Similarity=-0.035 Sum_probs=47.0
Q ss_pred EEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcc
Q 011027 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCW 299 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~ 299 (495)
.++++.+|. ..+++.|.+.+++.| ++++++++|++|..+ ++++..+. .++..+.+|.||+|+...
T Consensus 189 ~~~~~~gG~---~~l~~~l~~~l~~~g----~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 189 KLGYLEGGF---ATLIDALAEAIEARG----GEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred eEeccCCCH---HHHHHHHHHHHHhcC----ceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHH
Confidence 356666664 578888888877765 589999999999875 44444444 445556689999999863
No 106
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.06 E-value=4.2e-09 Score=108.84 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=52.8
Q ss_pred EEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 226 AFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 226 ~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
++.+. +.+|+..+.+.|.+.+.+.+ ++.+ .++.|+++..+ ++++.+|.+.+|..+.|+.||+|+|.|..
T Consensus 90 V~s~R-aQiDr~ly~kaL~e~L~~~~---nV~I-~q~~V~~Li~e--~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 90 VRALR-AQADRKLYRAAMREILENQP---NLDL-FQGEVEDLIVE--NGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred eeCcH-HhcCHHHHHHHHHHHHHcCC---CcEE-EEeEEEEEEec--CCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 44443 47888889999988776643 2565 56779988775 67788899999987888999999998764
No 107
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.05 E-value=2.5e-09 Score=109.38 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=96.7
Q ss_pred EECCCHHHHHHHHHHHhcCCccEEEEcCCcC--CCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011027 86 IIGAGIIGLTIARQLLVGSDLSVAVVDKVVP--CSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGLD 163 (495)
Q Consensus 86 IIGaGiaGls~A~~La~~~G~~V~liE~~~~--~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 163 (495)
|||+|++|+++|++++ +.|.+|+||||... ..|.|..+.+... ... ......+-.....++|+++.+..... .+
T Consensus 1 VVG~G~AGl~AA~~Aa-~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~d 76 (432)
T TIGR02485 1 VIGGGLAGLCAAIEAR-RAGASVLLLEAAPRARRGGNARHGRNIRV-AHD-IPTDFQRDSYPAEEFERDLAPVTGGR-TN 76 (432)
T ss_pred CCcccHHHHHHHHHHH-hCCCcEEEEeCCCCCcCCcCcccccchhh-ccc-chhhhhhhhccHHHHHHHHHHhhCCC-CC
Confidence 7999999999999998 59999999999754 2233332222111 100 01111110111223444443321100 00
Q ss_pred CccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceecHHHHHHHH
Q 011027 164 PLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLDAMLAVAYI 243 (495)
Q Consensus 164 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~~l 243 (495)
..+. ..-.+...+.++++.++|++++...... .| ......+...+ ...+++.|
T Consensus 77 ----~~l~----------~~~~~~s~~~i~wl~~~Gv~f~~~~~g~----~~-----~~~~~~~~~~~----g~~l~~~L 129 (432)
T TIGR02485 77 ----ESLS----------RLGIGRGSRDLRWAFAHGVHLQPPAAGN----LP-----YSRRTAFLRGG----GKALTNAL 129 (432)
T ss_pred ----HHHH----------HHHHhcchhHHHHHHhCCceeeecCCCC----cc-----ccCceeeecCC----HHHHHHHH
Confidence 0000 0001112344566677787765321100 11 00011222222 24688888
Q ss_pred HHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-CCeeeecCeEEEccCcchH
Q 011027 244 EKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-KNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 244 ~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+++.| ++++++++|++|..+++++++.+|.+. ++..+.++.||+|+|.+..
T Consensus 130 ~~~a~~~G----v~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 130 YSSAERLG----VEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHcC----CEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 88888876 699999999999875223566666654 3345667999999998654
No 108
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.05 E-value=9.4e-09 Score=107.67 Aligned_cols=187 Identities=21% Similarity=0.132 Sum_probs=101.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQ 160 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (495)
++||+|||+|++|+++|+.+++ . .+|+||||.....|+|..++|.++......++.. .++++....- .
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e--------~~~~d~~~~g--~ 75 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIE--------SHVEDTLIAG--A 75 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCCCCChhhccCCeeeccCCCccHH--------HHHHHHHHHc--c
Confidence 6899999999999999999974 5 8999999987767777777776654332222211 1111111100 0
Q ss_pred CCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceec
Q 011027 161 GLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 161 ~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
+. .+++. .+...+.++++.+.|+++......+- ..+.+.........-.+.+.+ -.
T Consensus 76 -------------~~----~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~--~~ 136 (536)
T PRK09077 76 -------------GL----CDEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAAD--AT 136 (536)
T ss_pred -------------CC----CCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCC--CC
Confidence 00 01111 11222344556667776543211000 000000000000111122211 11
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEec----CCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSN----STGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~----~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
...+...|.+.+.+.. ++++++++.|+++..++ +++++.+|.. .+|+ .+.++.||+|||.+..
T Consensus 137 G~~i~~~L~~~~~~~~---~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 137 GKAVQTTLVERARNHP---NITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHHHHHHHHhCC---CcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 2456777777665532 37999999999998642 1367777764 2343 4667999999999764
No 109
>PRK08013 oxidoreductase; Provisional
Probab=99.05 E-value=6.9e-08 Score=97.80 Aligned_cols=60 Identities=7% Similarity=-0.011 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
-..+.+.|.+.+.+.. +++++++++|++++.+ ++ .+.|+..+|+.+.+|.||-|.|.+|.
T Consensus 110 r~~l~~~L~~~~~~~~---~v~i~~~~~v~~i~~~--~~-~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 110 NSVIHYALWQKAQQSS---DITLLAPAELQQVAWG--EN-EAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred hHHHHHHHHHHHhcCC---CcEEEcCCeeEEEEec--CC-eEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 3457778887776642 3789999999999765 22 35566777877778999999999874
No 110
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.05 E-value=4.4e-09 Score=92.38 Aligned_cols=38 Identities=42% Similarity=0.587 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
+.||+|||||.+||++||+|| ++|++|+|+|++...+|
T Consensus 30 esDViIVGaGPsGLtAAyyLA-k~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLA-KAGLKVAIFERKLSFGG 67 (262)
T ss_pred hccEEEECcCcchHHHHHHHH-hCCceEEEEEeecccCC
Confidence 579999999999999999999 59999999999844333
No 111
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.04 E-value=2.2e-09 Score=121.54 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=103.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHH-HHHHHH
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWK-MLADSL 157 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 157 (495)
...+||||||+|++|+++|++++ +.|.+|+||||....+|+|..+.|.++....... ..... ....+.+. .....
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aa-e~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q-~~~gi-~D~~~~~~~d~~~~- 482 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAA-SCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQ-AKQDV-LDGGKFFERDTHLS- 482 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHH-HCCCcEEEEEccCCCCCchhhcccccccCCchhh-hhhcc-cccHHHHHHHHHHh-
Confidence 45789999999999999999998 5999999999987767777666665543211000 00000 00111111 11100
Q ss_pred HhcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCC--C
Q 011027 158 RDQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPY--D 231 (495)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~--~ 231 (495)
+. .+. .+++. .+...+.++++.+.|+++..... +.. .......+.+. .
T Consensus 483 ---~~----------~~~----~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg---~~~~r~~~~~~~~~ 536 (1167)
T PTZ00306 483 ---GK----------GGH----CDPGLVKTLSVKSADAISWLSSLGVPLTVLSQ------LGG---ASRKRCHRAPDKKD 536 (1167)
T ss_pred ---cc----------CCC----CCHHHHHHHHHhhHHHHHHHHHcCCCceeeec------cCC---CCCCceeecCcccC
Confidence 00 000 11111 11223344566677877654211 000 00001111111 1
Q ss_pred ceec--HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecC---C----CcEEEEEcC-----CCe--eeecCeEEEc
Q 011027 232 SQLD--AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS---T----GEVEAVQTS-----KNT--LYSKKAIVVA 295 (495)
Q Consensus 232 g~~~--p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~---~----~~~~~v~~~-----~g~--~~~a~~VV~A 295 (495)
+... ...+++.|.+.+++.-. .++++++++++++|..+++ + +++.+|... +|+ .+.|+.||+|
T Consensus 537 g~~~~~G~~i~~~l~~~~~~~~~-~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILA 615 (1167)
T PTZ00306 537 GTPVPIGFTIMRTLEDHIRTKLS-GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILA 615 (1167)
T ss_pred CCcCCcHHHHHHHHHHHHHhhcc-CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEe
Confidence 1111 23466677666654311 1279999999999997531 1 267787653 443 4667999999
Q ss_pred cCcchH
Q 011027 296 AGCWSG 301 (495)
Q Consensus 296 ~G~~s~ 301 (495)
||.+..
T Consensus 616 TGGf~~ 621 (1167)
T PTZ00306 616 TGGFSN 621 (1167)
T ss_pred cCCccc
Confidence 999876
No 112
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.03 E-value=2.8e-09 Score=111.30 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=55.9
Q ss_pred eEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcc
Q 011027 224 RAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCW 299 (495)
Q Consensus 224 ~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~ 299 (495)
+++++|.+|. ..+++.|.+.+++.| ++++++++|++|..+ ++++++|++.+|+.+.+|.||+|++..
T Consensus 209 ~g~~~~~gG~---~~l~~al~~~~~~~G----~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 209 WGVWFPRGGT---GALVAAMAKLAEDLG----GELRLNAEVIRIETE--GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred ceEEEcCCCH---HHHHHHHHHHHHHCC----CEEEECCeEEEEEee--CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 5788888886 578899999888876 589999999999876 567788999888767789999999863
No 113
>PRK06753 hypothetical protein; Provisional
Probab=99.01 E-value=4.7e-08 Score=98.16 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=42.5
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
++-..+.+.|.+.+.. ..++++++|+++..+ ++ .+.|++.+|+.+.+|.||-|.|.++.
T Consensus 95 i~R~~l~~~L~~~~~~------~~i~~~~~v~~i~~~--~~-~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 95 LHRQTLIDIIKSYVKE------DAIFTGKEVTKIENE--TD-KVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred ccHHHHHHHHHHhCCC------ceEEECCEEEEEEec--CC-cEEEEECCCCEEecCEEEECCCcchH
Confidence 3334566666665432 368899999999864 33 35677888877788999999998764
No 114
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.01 E-value=8.9e-08 Score=101.03 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+||+|||||++|+++|+.|+ +.|++|+||||..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~-~~G~~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLA-QQGVPVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHH-hCCCcEEEEeCCC
Confidence 3689999999999999999998 5999999999974
No 115
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.00 E-value=5.1e-08 Score=96.88 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=42.7
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEE-EEEcC-CCe--eeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVE-AVQTS-KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~-~v~~~-~g~--~~~a~~VV~A~G~~s~ 301 (495)
++-..+.+.|.+.+++.| +.++++++|+++..+ .+.+. .+... +|+ .+.+|.||-|.|.+|.
T Consensus 108 ~~r~~l~~~L~~~~~~~g----v~i~~~~~v~~~~~d--~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 108 IDRPELDRALREEAEERG----VDIRFGTRVVSIEQD--DDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp EEHHHHHHHHHHHHHHHT----EEEEESEEEEEEEEE--TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred hhHHHHHHhhhhhhhhhh----hhheeeeeccccccc--ccccccccccccCCceeEEEEeeeecccCcccc
Confidence 444578888888888876 689999999999876 33332 23322 342 5678999999999875
No 116
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.00 E-value=6.2e-08 Score=97.75 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+||+|||||++|+++|+.|+ +.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La-~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLA-RAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHH-hCCCcEEEEECC
Confidence 58999999999999999998 599999999997
No 117
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.00 E-value=8.9e-09 Score=103.75 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC-CCeeeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS-KNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~-~g~~~~a~~VV~A~G~~s~ 301 (495)
..+.+.|.+.+.+.+ +++++++++|+.+..+ ++.+. ++.. +|+.+.+|.||-|-|.+|.
T Consensus 104 ~~l~~~L~~~~~~~~---~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 104 SDLLNALLEAARALP---NVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHHhhCC---CcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCCCchH
Confidence 467788888887754 4799999999999886 34444 6666 8888888999999998765
No 118
>PRK06126 hypothetical protein; Provisional
Probab=99.00 E-value=1.3e-07 Score=99.93 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||++|+++|+.|+ ++|++|+||||..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La-~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLG-RRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHH-HCCCcEEEEeCCC
Confidence 689999999999999999998 5999999999873
No 119
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.99 E-value=1.2e-08 Score=107.90 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=95.7
Q ss_pred EEEECCCHHHHHHHHHHHhcCCccEEEEcCCc-CCCCcccCCcceeeeccC---CCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV-PCSGATGAGQGYIWMVHR---TPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~~V~liE~~~-~~~gaS~~~~g~i~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
|+|||+|++|+++|+.++ +.|.+|+||||.. +..+.|..++|.+..... ..++. ..+++++...
T Consensus 1 VlVVG~G~AGl~AAl~Aa-e~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~--------e~~~~d~~~~--- 68 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLA-ELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSP--------WRHFDDTVKG--- 68 (603)
T ss_pred CEEECccHHHHHHHHHHH-HcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCH--------HHHHHHHHHh---
Confidence 689999999999999998 5899999999986 555555555544322211 11111 1112222111
Q ss_pred cCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceecHHH
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLDAML 238 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~p~~ 238 (495)
+- +.....+ -..-.+...+.++++.+.|+++........ ...++. ....-.++..+. ....
T Consensus 69 -g~-------~~~d~~l----v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~~~~~--tG~~ 130 (603)
T TIGR01811 69 -GD-------FRARESP----VKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGG----VQVSRTAYARGQ--TGQQ 130 (603)
T ss_pred -cC-------CCCCHHH----HHHHHHHHHHHHHHHHHcCCEEEecCCCccccccccC----cccCcceecCCC--ChhH
Confidence 00 0000000 000111222344566677877642111000 001110 000111111111 1234
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC---CCe--eeecCeEEEccCcchH
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS---KNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~---~g~--~~~a~~VV~A~G~~s~ 301 (495)
++..|.+.+++.-..++++++++++|++|..++ ++++.+|... +|. .+.++.||+|||.+..
T Consensus 131 i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 131 LLLALDSALRRQIAAGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred HHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 555555544332111237999999999998752 4578887643 343 4568999999999753
No 120
>PRK08275 putative oxidoreductase; Provisional
Probab=98.98 E-value=8.8e-09 Score=108.40 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=94.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCcCC-CCcccCCcceeeeccCC-CCchHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVVPC-SGATGAGQGYIWMVHRT-PGSEIWDLALRSNKLWKMLADS 156 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~~~-~gaS~~~~g~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 156 (495)
++||+|||||+||+++|+.+++ . |.+|+||||.... +|++....+.+...... .++. ..++..+...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~-~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~--------~~~~~d~~~~ 79 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKE-RNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATP--------EQYTKEITIA 79 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCH--------HHHHHHHHHh
Confidence 5899999999999999999984 4 7899999998653 33322222222110100 1111 0111211110
Q ss_pred HHhcCCCCccccceEeeeeEEEecCHHHH----HHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCc
Q 011027 157 LRDQGLDPLQVIGWKQTGSLLIGRTPEEL----VMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDS 232 (495)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g 232 (495)
+ .+. .+++.. +...+..+++.+.|+++......... .+.. ...+...++.
T Consensus 80 ----~-----------~~~----~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~--~~~~---~~~~~~~~~~-- 133 (554)
T PRK08275 80 ----N-----------DGI----VDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYA--VKKV---HHMGSYVLPM-- 133 (554)
T ss_pred ----c-----------CCC----ccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEe--eecc---cccCcccccC--
Confidence 0 000 011111 11223445566677776432110000 0000 0000000111
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCCe--eeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g~--~~~a~~VV~A~G~~s~ 301 (495)
-....+++.|.+.+++.| +++++++.|++|..++ ++++.+|. ..+|+ .+.++.||+|||.+..
T Consensus 134 -~~G~~i~~~L~~~~~~~g----v~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 134 -PEGHDIKKVLYRQLKRAR----VLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred -CChHHHHHHHHHHHHHCC----CEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 012357788888777654 7999999999998742 45676665 33554 4567999999999764
No 121
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.98 E-value=1.4e-08 Score=102.60 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
..+++.|.+.+++.| +.++++++|+++..+ + ..+.|.+.+ ..+.+|.||+|+|.++
T Consensus 105 ~~v~~~L~~~l~~~g----v~i~~~~~V~~i~~~--~-~~~~v~~~~-~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELG----VEILTNSKVKSIKKD--D-NGFGVETSG-GEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCC----CEEEeCCEEEEEEec--C-CeEEEEECC-cEEEcCEEEECCCCcc
Confidence 567888888887765 689999999999764 2 356777744 4456799999999865
No 122
>PRK07588 hypothetical protein; Provisional
Probab=98.98 E-value=2.8e-07 Score=93.15 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+.|.+.+.. +++++++++|++++.+ ++ .+.|.+++|+...+|.||.|.|.++.
T Consensus 104 ~l~~~L~~~~~~-----~v~i~~~~~v~~i~~~--~~-~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 104 DLAAAIYTAIDG-----QVETIFDDSIATIDEH--RD-GVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHhhhc-----CeEEEeCCEEeEEEEC--CC-eEEEEECCCCEEEeCEEEECCCCCcc
Confidence 455666554332 2689999999999875 33 35678888877778999999999775
No 123
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.98 E-value=1.4e-08 Score=89.85 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=42.2
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcC------CC-----eeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTS------KN-----TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~------~g-----~~~~a~~VV~A~G~~s~ 301 (495)
.|+..++..|...+.+.| ++++..+.|+++...+ ++++.+|.++ .| -.+.++.||-|||+.+.
T Consensus 93 ~d~~~~~s~L~s~a~~aG----akifn~~~vEDvi~r~-~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 93 ADSVEFTSTLASKAIDAG----AKIFNLTSVEDVIVRE-DDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp S-HHHHHHHHHHHHHTTT----EEEEETEEEEEEEEEC-SCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred EcHHHHHHHHHHHHhcCC----CEEEeeeeeeeeEEEc-CCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 566678888777766655 6888889999988763 3788777643 22 24567999999999764
No 124
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.95 E-value=5.1e-07 Score=92.32 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
...+||+|||||++|+++|+.|+ +.|++|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA-~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLA-KGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHH-hCCCcEEEEecCC
Confidence 34799999999999999999998 5999999999974
No 125
>PRK11445 putative oxidoreductase; Provisional
Probab=98.93 E-value=7.3e-07 Score=88.63 Aligned_cols=32 Identities=41% Similarity=0.573 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
+||+|||||++|+++|+.|++ . ++|+|||+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCC
Confidence 799999999999999999984 7 9999999974
No 126
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=1.9e-08 Score=105.88 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=42.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWM 130 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~ 130 (495)
++||+|||+|++|+++|+.++ +.|.+|+||||.....|+|..+.|.++.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa-~~G~~v~llEk~~~~gG~~~~~~g~~~~ 55 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAA-HRGLSTVVVEKAPHYGGSTARSGGGVWI 55 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCCCCCccccccCceeec
Confidence 689999999999999999998 5899999999987767778777776643
No 127
>PRK06184 hypothetical protein; Provisional
Probab=98.93 E-value=9.2e-09 Score=107.36 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+.|.+.+.+.| ++++++++|+++..+ ++.+ .++. .+++.+.+|.||.|.|.++.
T Consensus 110 ~le~~L~~~l~~~g----v~i~~~~~v~~i~~~--~~~v-~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 110 RTERILRERLAELG----HRVEFGCELVGFEQD--ADGV-TARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHCC----CEEEeCcEEEEEEEc--CCcE-EEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 46667777776654 689999999999875 3333 3333 44566778999999999985
No 128
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.92 E-value=5.4e-09 Score=94.63 Aligned_cols=31 Identities=39% Similarity=0.536 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|+|||+||+|+++|+.|. ..|.+|+|+||+
T Consensus 3 siaIVGaGiAGl~aA~~L~-~aG~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALR-EAGREVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHH-hcCcEEEEEEcC
Confidence 5999999999999999997 599999999996
No 129
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.91 E-value=8.1e-09 Score=100.20 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=38.3
Q ss_pred ceeEEecCceeEEEEecCCCcEEEEEcC--CC----eeeecCeEEEccCc-chHHHHHH
Q 011027 255 RYAEFYHDPVTCLLRSNSTGEVEAVQTS--KN----TLYSKKAIVVAAGC-WSGSLMHD 306 (495)
Q Consensus 255 ~~~~~~~~~V~~l~~~~~~~~~~~v~~~--~g----~~~~a~~VV~A~G~-~s~~l~~~ 306 (495)
|++++.++.|++|..+.+++++++|... ++ .++.++.||+|+|+ .+..|+-.
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 4899999999999776446777777743 23 35667999999998 66677654
No 130
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.91 E-value=2.3e-08 Score=110.88 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=93.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC-CCCcccCCcceeeeccCC-CCchHHHHHHHHHHHHHHHHHHHH
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP-CSGATGAGQGYIWMVHRT-PGSEIWDLALRSNKLWKMLADSLR 158 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~-~~gaS~~~~g~i~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 158 (495)
++||+|||||++|+++|++++ +.|.+|+|+||... .+|++....+.+...... .++.. .++.+....
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa-~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e--------~~~~Dt~~~-- 81 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAA-EHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPE--------DYVAEITRA-- 81 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHH-HCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHH--------HHHHHHHhh--
Confidence 689999999999999999998 58999999999865 233332222222111111 11110 111211110
Q ss_pred hcCCCCccccceEeeeeEEEecCHHH----HHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCc-ceEEE-eCCCc
Q 011027 159 DQGLDPLQVIGWKQTGSLLIGRTPEE----LVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGED-SRAAF-LPYDS 232 (495)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~-~~~~~-~~~~g 232 (495)
+ .|. .+++. .+...+.++++.++|+++........ ..... ..+.+ .+.
T Consensus 82 --g-----------~gl----~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~-------~~~~~~~~~~~~~~~-- 135 (897)
T PRK13800 82 --N-----------DGI----VNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEY-------AVRRVHRSGSYVLPM-- 135 (897)
T ss_pred --c-----------CCC----CCHHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCE-------eeeeeccCCCccccC--
Confidence 0 000 01111 11122345566677887653211000 00000 00000 011
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
-....+++.|.+.+.+.+...++.+..++.+++|..+ ++++.++.. .+|+ .+.++.||+|||++..
T Consensus 136 -~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 136 -PEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred -CCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 0123466666666654432223677778778888765 567777653 3564 4567999999999754
No 131
>PLN02985 squalene monooxygenase
Probab=98.91 E-value=5.6e-07 Score=93.51 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=32.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+||+|||||++|+++|+.|+ +.|++|+|+||..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa-~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALA-KDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHH-HcCCeEEEEECcC
Confidence 3689999999999999999998 5999999999963
No 132
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.90 E-value=4.3e-08 Score=100.50 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCC--CcEEEEEcC-CC-----eeeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNST--GEVEAVQTS-KN-----TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~--~~~~~v~~~-~g-----~~~~a~~VV~A~G~~s~ 301 (495)
..++.-|.+.++++| |.++++++|++|..+.++ +.+.+|... +| .+...|.||+|+|..+.
T Consensus 226 eSLV~PL~~~Le~~G----V~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHG----VDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCC----CEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 567888888888887 799999999999875223 667777764 22 24577999999998665
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.90 E-value=3.4e-08 Score=96.96 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=46.9
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCc
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGC 298 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~ 298 (495)
.+|-.++-+.+.+.+++.. |+.+ .+.+|++|..+ ++++++|.+.+|..+.+|.||+|||.
T Consensus 91 qvDr~~y~~~~~~~l~~~~---nl~i-~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 91 QVDRDKYSRAMREKLESHP---NLTI-IQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EE-HHHHHHHHHHHHHTST---TEEE-EES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hccHHHHHHHHHHHHhcCC---CeEE-EEcccceEEec--CCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5666778888887777643 4666 47899999886 78999999999988888999999999
No 134
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.90 E-value=3e-10 Score=93.22 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=34.1
Q ss_pred eeceeecccccccccccccccceee-eecCCCCCcccc-ccc
Q 011027 15 LQESVNVWGSRGRRQSCRTSAAFAF-KSSFFGKKPLSL-SVN 54 (495)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~gf~~-k~~g~g~kr~~l-~~~ 54 (495)
=+.+++|||+||.||++|+++||.| |.||||+||||+ |+.
T Consensus 82 ~~~~l~Tys~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 82 PGGTLATYSSAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp EEEEEEES--BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred CCcEEEEeechHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 3678999999999999999999999 999999999999 753
No 135
>PRK05868 hypothetical protein; Validated
Probab=98.89 E-value=7.1e-07 Score=89.41 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.||+|||||++|+++|+.|+ ++|++|+|||+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~-~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLG-RHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCC
Confidence 47999999999999999998 5999999999973
No 136
>PLN02661 Putative thiazole synthesis
Probab=98.89 E-value=2.4e-08 Score=96.50 Aligned_cols=38 Identities=34% Similarity=0.550 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPC 117 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~ 117 (495)
.++||+|||||++|+++|++|+++.|++|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 36899999999999999999985358999999997543
No 137
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.89 E-value=2.6e-08 Score=104.83 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=91.3
Q ss_pred cEEEECCCHHHHHHHHHHHh---cCCccEEEEcCCcCCCCcccCCccee--eeccCC---CCchHHHHHHHHHHHHHHHH
Q 011027 83 DVIIIGAGIIGLTIARQLLV---GSDLSVAVVDKVVPCSGATGAGQGYI--WMVHRT---PGSEIWDLALRSNKLWKMLA 154 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~---~~G~~V~liE~~~~~~gaS~~~~g~i--~~~~~~---~~~~~~~l~~~~~~~~~~~~ 154 (495)
||+|||||+||+++|+.+++ +.|.+|+||||......+| .++|+. ...... .++. .++++...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~--------e~~~~d~~ 71 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNA--------EDYVRYVR 71 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCH--------HHHHHHHH
Confidence 79999999999999999972 4799999999986532223 345522 111110 0111 11122211
Q ss_pred HHHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCcee
Q 011027 155 DSLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQL 234 (495)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~ 234 (495)
.. + .|......-..-.+...+.++++.+.|+++........ .. ..+......+|.
T Consensus 72 ~~----~-----------~gl~d~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~--~~-------~~g~~~~~~gG~- 126 (614)
T TIGR02061 72 TD----L-----------MGLVREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGK--YV-------REGRWQIMIHGE- 126 (614)
T ss_pred Hh----c-----------CCCCcHHHHHHHHHHHHHHHHHHHHcCCCceecCCCCc--cc-------cCCCcccCcCch-
Confidence 11 0 01000000001122333455666678887653210000 00 000000011232
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecC-CCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS-TGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~-~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
.+.+.+...+.+.+ +++++++.|++|..+++ ++++++|.. .+|+ .+.++.||+|||.+..
T Consensus 127 ---~~~r~l~~~l~~~~----~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 ---SYKPIVAEAAKNAL----GDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred ---hHHHHHHHHHHhCC----CeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 23333333333332 58899999999987531 167888764 3453 4567999999999875
No 138
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.89 E-value=4.3e-07 Score=91.73 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
+||+|||||++|+++|+.|+ +.|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la-~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLA-SAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHH-hCCCcEEEEecCC
Confidence 48999999999999999998 5999999999974
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.87 E-value=4.7e-07 Score=95.34 Aligned_cols=35 Identities=40% Similarity=0.591 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+||+|||||++|+++|+.|+ +.|++|+||||..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~-~~G~~v~v~Er~~ 43 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLG-QYGVRVLVLERWP 43 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHH-HCCCcEEEEecCC
Confidence 3689999999999999999998 5999999999974
No 140
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.87 E-value=1.3e-08 Score=92.91 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
..+.++|...+++++ +.++++++|+++.++ +++ |.|++.+++.+.++.||+|+|.++.
T Consensus 82 ~~v~~yl~~~~~~~~----l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 82 EEVLDYLQEYAERFG----LEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHHHHHHTT----GGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE---SSCS
T ss_pred HHHHHHHHHHHhhcC----cccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEeeeccCC
Confidence 456677777777765 578899999999987 344 9999999855557999999998654
No 141
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.87 E-value=1.7e-07 Score=99.82 Aligned_cols=35 Identities=37% Similarity=0.655 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~ 115 (495)
.++||+|||||++||++|+.|+ + .|++|+|||+..
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~La-r~~Gi~v~IiE~~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLS-AFPDITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHh-cCCCCcEEEEEcCC
Confidence 3689999999999999999998 5 499999999973
No 142
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.87 E-value=4.1e-07 Score=87.91 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+.+|+||||||+|+++|..|. +.|++|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~-r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALH-RKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHH-HcCCeEEEEeeccc
Confidence 357999999999999999997 69999999999743
No 143
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.86 E-value=1.1e-08 Score=107.34 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=39.2
Q ss_pred ceeEEecCceeEEEEecCCCcEEEEEcCC-C---eeeecCeEEEccCc-chHHHHHH
Q 011027 255 RYAEFYHDPVTCLLRSNSTGEVEAVQTSK-N---TLYSKKAIVVAAGC-WSGSLMHD 306 (495)
Q Consensus 255 ~~~~~~~~~V~~l~~~~~~~~~~~v~~~~-g---~~~~a~~VV~A~G~-~s~~l~~~ 306 (495)
|++++.++.|++|..+ ++++.+|+..+ + .+.+++.||+|+|+ ++.+|+..
T Consensus 208 nl~i~~~~~V~rI~~~--~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~ 262 (532)
T TIGR01810 208 NLEVQTRAFVTKINFE--GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL 262 (532)
T ss_pred CeEEEeCCEEEEEEec--CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh
Confidence 5899999999999886 56778887643 2 24578999999999 88887753
No 144
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.86 E-value=1.5e-08 Score=105.06 Aligned_cols=189 Identities=22% Similarity=0.169 Sum_probs=106.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRD 159 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 159 (495)
.++||+|||||.|||.+|..++ +.|.+|+|+||..+..|.|..++|.++............ . -..+|.+...-
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa-~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~d-s--~e~~~~dtvkg--- 77 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAA-EAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGD-S--PELHFYDTVKG--- 77 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHH-hcCCcEEEEEccccCCCchhhhcccccccccCcccccCC-C--HHHHHHHHHhc---
Confidence 3689999999999999999998 599999999998776688888888777665433210000 0 01111111110
Q ss_pred cCCCCccccceEeeeeEEEecCH---HHHHHHHHHHHHHHHcCCceE-EcChhhHHHhCCCCccCCcceEEEeCCCceec
Q 011027 160 QGLDPLQVIGWKQTGSLLIGRTP---EELVMLKERVKQLCEAGLRAE-YLSSSDLLQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~~~~~~---~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
.-++...+ .-.+...+....+++.|+++. ..+.....+.+...... ...+ .+--.
T Consensus 78 ---------------~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~---rt~~---~~~~t 136 (562)
T COG1053 78 ---------------GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKP---RTCF---AADKT 136 (562)
T ss_pred ---------------cCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCC---ccee---cCCCC
Confidence 00011000 011222334556666777643 22333333333322211 1111 22222
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEE---cCCCe--eeecCeEEEccCcch
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQ---TSKNT--LYSKKAIVVAAGCWS 300 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~---~~~g~--~~~a~~VV~A~G~~s 300 (495)
...++..|.+.+.+.. +++++.+..+.++..++ ++.+.++. ..+|+ ++.++.||+|||+..
T Consensus 137 G~~ll~~L~~~~~~~~---~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 137 GHELLHTLYEQLLKFS---GIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cHHHHHHHHHHHHHhh---cchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 3467888887777643 14567888999988763 33244443 34453 556689999999866
No 145
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.86 E-value=4.6e-08 Score=99.32 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+.|.+.+.+.. ++.++++++|+++..+ ++ .+.|++.+|+.+.+|.||.|.|.++.
T Consensus 112 ~l~~~L~~~~~~~~---~v~v~~~~~v~~i~~~--~~-~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 112 VIQLALLEQVQKQD---NVTLLMPARCQSIAVG--ES-EAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHhcCC---CeEEEcCCeeEEEEee--CC-eEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 45566777665532 3788999999999765 33 35677778877778999999998764
No 146
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.86 E-value=8.8e-08 Score=96.13 Aligned_cols=61 Identities=3% Similarity=-0.031 Sum_probs=44.8
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+.-..+.+.|.+.+.+.+ ++.++++++|+++..+ ++ .+.|...++ .+.+|.||.|.|.+|.
T Consensus 101 v~r~~L~~~L~~~~~~~~---~v~~~~~~~v~~i~~~--~~-~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 101 VKNSDFKKILLSKITNNP---LITLIDNNQYQEVISH--ND-YSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred EEHHHHHHHHHHHHhcCC---CcEEECCCeEEEEEEc--CC-eEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 334578888888777653 3678889999999765 33 345777666 5567999999999875
No 147
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.86 E-value=6e-08 Score=95.60 Aligned_cols=183 Identities=25% Similarity=0.229 Sum_probs=102.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHHHHHHHHHHHHHHHHhcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLALRSNKLWKMLADSLRDQGL 162 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 162 (495)
||+|||+|+|||++|++|++ . ++|+||-|.....++|-..+|.|...+...++..... .+.+. .|
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv-----------~DTL~-AG- 73 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-S-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHV-----------ADTLA-AG- 73 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-C-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHH-----------HHHHH-hc-
Confidence 89999999999999999963 4 9999999998777888888888876665555432111 11110 00
Q ss_pred CCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhH-HHhCCCCccCCcceEEEeCCCceecHHHHHH
Q 011027 163 DPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDL-LQAEPELMVGEDSRAAFLPYDSQLDAMLAVA 241 (495)
Q Consensus 163 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~g~~~p~~~~~ 241 (495)
.|.-.....+.-...-....+.+.++|+++.--....+ ..++. .....-++.-.+ --...+++
T Consensus 74 ----------~glcD~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Eg----gHS~rRIlH~~~--~TG~~I~~ 137 (518)
T COG0029 74 ----------AGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREG----GHSRRRILHAAD--ATGKEIMT 137 (518)
T ss_pred ----------CCCCcHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeec----ccCCceEEEecC--CccHHHHH
Confidence 00000000000011112233445556665421110000 00000 000111111111 22356888
Q ss_pred HHHHHhhhhccCCceeEEecCceeEEEEecCCC-cEEEEEcCC--C--eeeecCeEEEccCcchH
Q 011027 242 YIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTG-EVEAVQTSK--N--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 242 ~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~-~~~~v~~~~--g--~~~~a~~VV~A~G~~s~ 301 (495)
.|.+.+++. .||++++++.+.+|..+ ++ .+.+|.+.+ + ..+.++.||+|||....
T Consensus 138 ~L~~~v~~~---p~I~v~e~~~a~~li~~--~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ 197 (518)
T COG0029 138 ALLKKVRNR---PNITVLEGAEALDLIIE--DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG 197 (518)
T ss_pred HHHHHHhcC---CCcEEEecchhhhhhhc--CCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence 888888764 35899999999999876 44 343666542 2 35567999999998543
No 148
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.85 E-value=7.4e-08 Score=98.71 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEe----cCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRS----NSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~----~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.-..+.+.|.+.+.+.+. .++.++++++|+++..+ ++++..+.|++.+|+.+.+|.||-|.|.+|.
T Consensus 115 ~~~~l~~~L~~~~~~~~~-~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 115 ENDNIQNSLYNRLQEYNG-DNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EHHHHHHHHHHHHHhCCC-CCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 334577778777766431 14789999999999752 1123346677788877888999999999875
No 149
>PLN02612 phytoene desaturase
Probab=98.85 E-value=3.7e-06 Score=88.71 Aligned_cols=61 Identities=8% Similarity=-0.053 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
|..+++.|.+.+++.| ++++++++|++|..++ ++.++.+.+.+|+.+.+|+||+|+....-
T Consensus 307 ~~~l~~~l~~~l~~~G----~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~ad~VI~a~p~~~l 367 (567)
T PLN02612 307 PERLCMPIVDHFQSLG----GEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEGDVYVSATPVDIL 367 (567)
T ss_pred hHHHHHHHHHHHHhcC----CEEEeCCeeeEEEECC-CCcEEEEEECCCcEEECCEEEECCCHHHH
Confidence 3668888888777765 5899999999998753 45566778778877778999999976443
No 150
>PRK07190 hypothetical protein; Provisional
Probab=98.84 E-value=4e-08 Score=101.55 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+.|.+.+.+.| ++++.+++|+++..+ ++. +.+.+.+|+.+.++.||.|.|..+.
T Consensus 110 ~le~~L~~~~~~~G----v~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 110 YVEKLLDDKLKEAG----AAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHHCC----CEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECCCCCHH
Confidence 45556666676665 689999999999875 333 3455566766678999999998763
No 151
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.84 E-value=1.5e-07 Score=93.54 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC--eeeecCeEEEccCcc-hHHHHHHh
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN--TLYSKKAIVVAAGCW-SGSLMHDL 307 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g--~~~~a~~VV~A~G~~-s~~l~~~l 307 (495)
-+.++++.|.+.++++| ++++.+++|.++..+ ++++..|.+.++ ..+.+|.||+|+|+| +..|...+
T Consensus 261 ~G~RL~~aL~~~~~~~G----g~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLG----GVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred cHHHHHHHHHHHHHHCC----CEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 35688899999998887 588889999999876 566777887665 356689999999999 89887764
No 152
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.84 E-value=2.7e-08 Score=102.76 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=53.7
Q ss_pred EEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
+++.+. +++|+..+.+.|.+.+++.+ ++.++ +..|+.+..++ ++++.+|.+.+|..+.|+.||+|||.|.
T Consensus 85 AV~~~R-aQVDr~~y~~~L~e~Le~~p---gV~Il-e~~Vv~li~e~-~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 85 AVRATR-AQIDKVLYRKAMRNALENQP---NLSLF-QGEVEDLILED-NDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cccccH-HhCCHHHHHHHHHHHHHcCC---CcEEE-EeEEEEEEEec-CCcEEEEEECCCCEEECCEEEEccCccc
Confidence 445555 78999999999998888764 24554 55788876542 4678889999887777899999999993
No 153
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.82 E-value=4.1e-08 Score=93.10 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=90.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcceeeeccCCCCchHHHHHH-HHHHHHHHHH--H
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQGYIWMVHRTPGSEIWDLAL-RSNKLWKMLA--D 155 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g~i~~~~~~~~~~~~~l~~-~~~~~~~~~~--~ 155 (495)
+..+||+|||||++|++.|+.|+ +.|.+|.||||+.. .|+...-+|.+ -++....++. +
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~-kdGRrVhVIERDl~-----------------EPdRivGEllQPGG~~~L~~LGl~D 104 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALA-KDGRRVHVIERDLS-----------------EPDRIVGELLQPGGYLALSKLGLED 104 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHh-hCCcEEEEEecccc-----------------cchHHHHHhcCcchhHHHHHhCHHH
Confidence 34689999999999999999999 59999999999721 22222222221 1122222211 1
Q ss_pred HHHhcCCCCccccceEeeeeEEEecCHHHHHHHHHHHHHHHHcCCceEEcChhhHHHhCCCCccCCcceEEEeCCCceec
Q 011027 156 SLRDQGLDPLQVIGWKQTGSLLIGRTPEELVMLKERVKQLCEAGLRAEYLSSSDLLQAEPELMVGEDSRAAFLPYDSQLD 235 (495)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~g~~~ 235 (495)
-+ .+| +-++.--+.+..+.++ +.--+|.-..+....|.-+.+
T Consensus 105 cv--e~I------DAQ~v~Gy~ifk~gk~-------------------------v~~pyP~~~f~~d~~GrsFhn----- 146 (509)
T KOG1298|consen 105 CV--EGI------DAQRVTGYAIFKDGKE-------------------------VDLPYPLKNFPSDPSGRSFHN----- 146 (509)
T ss_pred Hh--hcc------cceEeeeeEEEeCCce-------------------------eeccCCCcCCCCCcccceeec-----
Confidence 11 222 2222222222222221 111122111122223333333
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC--Ce--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK--NT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~--g~--~~~a~~VV~A~G~~s~ 301 (495)
.++++.|++.+.... |+++ ++..|.++.++ ++.+.+|+.++ |+ ...|..-|+|-|-+++
T Consensus 147 -GRFvq~lR~ka~slp---NV~~-eeGtV~sLlee--~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 147 -GRFVQRLRKKAASLP---NVRL-EEGTVKSLLEE--EGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSN 209 (509)
T ss_pred -cHHHHHHHHHHhcCC---CeEE-eeeeHHHHHhc--cCeEEeEEEecCCCceEEEecceEEEecchhHH
Confidence 489999999887654 4444 56678888776 66777887643 32 2345788999999876
No 154
>PRK06996 hypothetical protein; Provisional
Probab=98.81 E-value=2.1e-07 Score=94.22 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=42.6
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC---eeeecCeEEEccCcc
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN---TLYSKKAIVVAAGCW 299 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g---~~~~a~~VV~A~G~~ 299 (495)
++-..+.+.|.+.+.+.+ +.++++++++++..+ +..+.++..++ +.+.+|.||.|.|..
T Consensus 112 v~r~~l~~~L~~~~~~~g----~~~~~~~~v~~~~~~---~~~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 112 VRYGSLVAALARAVRGTP----VRWLTSTTAHAPAQD---ADGVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred EEhHHHHHHHHHHHHhCC----CEEEcCCeeeeeeec---CCeEEEEECCCCcceEEeeeEEEECCCCC
Confidence 444578888888887765 588899999998664 23356665543 466789999999964
No 155
>PRK02106 choline dehydrogenase; Validated
Probab=98.80 E-value=8.4e-08 Score=101.35 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++|+||||||.+|+.+|..|++..|++|+|||++.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 68999999999999999999954899999999984
No 156
>PRK07236 hypothetical protein; Provisional
Probab=98.80 E-value=1.6e-07 Score=94.75 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||++|+++|+.|+ +.|++|+|+||..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~-~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLR-RAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHH-hCCCCEEEEecCC
Confidence 578999999999999999998 5999999999974
No 157
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.79 E-value=1.1e-06 Score=92.81 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
...+|+||||||+|+++|+.|+ ++|++|+||||..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~-r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAK-KKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHH-hcCCeEEEEeccc
Confidence 3689999999999999999997 5999999999964
No 158
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.79 E-value=4e-09 Score=107.38 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ga 120 (495)
||||||||++|+++|+.+| +.|.+|+|||+....+|.
T Consensus 1 DVVVvGgG~aG~~AAi~AA-r~G~~VlLiE~~~~lGG~ 37 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAA-RAGAKVLLIEKGGFLGGM 37 (428)
T ss_dssp EEEEE--SHHHHHHHHHHH-HTTS-EEEE-SSSSSTGG
T ss_pred CEEEECccHHHHHHHHHHH-HCCCEEEEEECCccCCCc
Confidence 7999999999999999998 599999999998654443
No 159
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.78 E-value=9.8e-08 Score=97.66 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhhccCCcee--EEecCceeEEEEecCCCcEEEEEcCCC--e--eeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYA--EFYHDPVTCLLRSNSTGEVEAVQTSKN--T--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~--~~~~~~V~~l~~~~~~~~~~~v~~~~g--~--~~~a~~VV~A~G~~s~ 301 (495)
..+.++|.+.++..+ +. ++++++|+++... ++.|.|++.++ . ...+|.||+|+|.++.
T Consensus 111 ~ev~~YL~~~a~~fg----l~~~I~~~t~V~~V~~~---~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 111 REVLAYLQDFAREFK----IEEMVRFETEVVRVEPV---DGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHHcC----CcceEEecCEEEEEeec---CCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 467888888888776 34 7899999999874 34588887532 2 2346999999998754
No 160
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.76 E-value=6.2e-06 Score=85.21 Aligned_cols=76 Identities=16% Similarity=-0.008 Sum_probs=47.7
Q ss_pred EEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecC-CC--cEEEEEcCCC---eeeecCeEEEccCc
Q 011027 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS-TG--EVEAVQTSKN---TLYSKKAIVVAAGC 298 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~-~~--~~~~v~~~~g---~~~~a~~VV~A~G~ 298 (495)
.+.++.++. ...+.+.|.+.+++.| ++++++++|++|..+.+ ++ ++++|.+.+| +.+.+|+||+|+..
T Consensus 209 ~~~~~~g~~--~~~l~~pl~~~L~~~G----g~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 209 KLRMLKGSP--DKYLTKPILEYIEARG----GKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred eeeeecCCc--chhHHHHHHHHHHHCC----CEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 344444442 2334555666666655 58999999999987521 12 2666666543 45668999999998
Q ss_pred chH-HHHHH
Q 011027 299 WSG-SLMHD 306 (495)
Q Consensus 299 ~s~-~l~~~ 306 (495)
+.. .|++.
T Consensus 283 ~~~~~Ll~~ 291 (474)
T TIGR02732 283 PGIKRLLPQ 291 (474)
T ss_pred HHHHhhCCh
Confidence 653 44443
No 161
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.76 E-value=1.9e-06 Score=86.00 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~ 115 (495)
||+|||||++|+++|++|++ . |++|+|||+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~-~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQR-ARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHh-cCCCCeEEEEeCCC
Confidence 79999999999999999984 5 99999999975
No 162
>PLN02487 zeta-carotene desaturase
Probab=98.73 E-value=1.1e-05 Score=84.38 Aligned_cols=73 Identities=15% Similarity=-0.016 Sum_probs=50.7
Q ss_pred EEeCCCceecHH-HHHHHHHHHhhhhccCCceeEEecCceeEEEEecC-CC--cEEEEEc---CCCeeeecCeEEEccCc
Q 011027 226 AFLPYDSQLDAM-LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNS-TG--EVEAVQT---SKNTLYSKKAIVVAAGC 298 (495)
Q Consensus 226 ~~~~~~g~~~p~-~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~-~~--~~~~v~~---~~g~~~~a~~VV~A~G~ 298 (495)
+.++.++ +. .++..+.+.+++.| ++++++++|.+|..+.+ ++ ++++|.+ .+++.+.+|.||+|++.
T Consensus 286 l~~~~Gg---~~~~l~~pl~~~L~~~G----g~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 286 LRMLKGS---PDVRLSGPIAKYITDRG----GRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV 358 (569)
T ss_pred eeecCCC---chHHHHHHHHHHHHHcC----CEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence 4555544 23 47788888888876 59999999999988632 22 3677877 33456778999999998
Q ss_pred chH-HHHH
Q 011027 299 WSG-SLMH 305 (495)
Q Consensus 299 ~s~-~l~~ 305 (495)
+.. .|++
T Consensus 359 ~~~~~Llp 366 (569)
T PLN02487 359 PGIKRLLP 366 (569)
T ss_pred HHHHHhCC
Confidence 643 4444
No 163
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.72 E-value=3.1e-07 Score=92.84 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..||+|||||++|+++|+.|+ +.|++|+|+|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~-~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLH-LAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHH-hcCCCEEEEEcCC
Confidence 478999999999999999998 5999999999975
No 164
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.72 E-value=3.5e-07 Score=92.29 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..||+|||||++|+++|+.|+ ++|++|+|||+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~-~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLH-KAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHH-HCCCCEEEEECCC
Confidence 478999999999999999998 5999999999975
No 165
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.71 E-value=7.6e-07 Score=90.26 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=49.0
Q ss_pred EEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcc
Q 011027 226 AFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCW 299 (495)
Q Consensus 226 ~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~ 299 (495)
+.+|.+|. ..+.+.|.+.+...| ++++++++|++|..++ ++++++|++.+|+.+.++.||.....+
T Consensus 224 ~~yp~gG~---g~L~qal~r~~a~~G----g~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 224 FIYPLYGL---GGLPQAFSRLCAIYG----GTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred ceeeCCCH---HHHHHHHHHHHHHcC----cEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECcccc
Confidence 45565553 468888888777776 4899999999998752 467888999999777789777654443
No 166
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.71 E-value=4.2e-07 Score=94.70 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=46.9
Q ss_pred EEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC-----eeeecCeEEEccCcc
Q 011027 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN-----TLYSKKAIVVAAGCW 299 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g-----~~~~a~~VV~A~G~~ 299 (495)
|.+++.+|. ..++++|.+.+++.| ++++++++|++|..+ ++++..+.+.++ +.+.+|.||.++...
T Consensus 223 G~~~~~GG~---~~l~~aL~~~~~~~G----~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 223 GLWHLHGSM---QTLSDRLVEALKRDG----GNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred CceeecCcH---HHHHHHHHHHHHhcC----CEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 455566664 578888888887765 589999999999886 444444444333 456689999888764
No 167
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.69 E-value=3.5e-07 Score=93.13 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=44.6
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
++...+++.|.+.+.. ..++++++|+++..+ ++ .|.|...+|..+.+|.||.|.|.++.
T Consensus 102 i~R~~l~~~L~~~~~~------~~v~~~~~v~~i~~~--~~-~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLPE------GIASFGKRATQIEEQ--AE-EVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCCC------ceEEcCCEEEEEEec--CC-cEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4556788888776532 357789999999864 23 36787788877778999999999875
No 168
>PRK07208 hypothetical protein; Provisional
Probab=98.66 E-value=4.5e-07 Score=94.25 Aligned_cols=39 Identities=38% Similarity=0.505 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
...||+|||||++||++|+.|+ ++|++|+|+|+.+..+|
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~-~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELL-KRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHH-HCCCcEEEEecCCCCCc
Confidence 3578999999999999999997 58999999999865444
No 169
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.56 E-value=7.9e-07 Score=86.28 Aligned_cols=33 Identities=39% Similarity=0.589 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
+||+|||||++|+++|+.|+ +.|++|+|||++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~-~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAA-RANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHH-HCCCCEEEEeccC
Confidence 58999999999999999997 5999999999875
No 170
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.56 E-value=8.4e-07 Score=92.76 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.++|+||||+|.+|+++|..|+ +.|.+|+|||++
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG 39 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAG 39 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCC
Confidence 4799999999999999999999 799999999997
No 171
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.55 E-value=1.8e-06 Score=89.10 Aligned_cols=60 Identities=10% Similarity=-0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCe-----eeecCeEEEccCcch
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT-----LYSKKAIVVAAGCWS 300 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~-----~~~a~~VV~A~G~~s 300 (495)
+..+++.|.+.+++.| ++++++++|++|..++ ++++.+|.+.+++ .+.+|.||+|+....
T Consensus 212 ~~~l~~~l~~~l~~~g----~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRG----GEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcC----CEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 4677888888777665 4899999999997643 4556677765543 566799999997643
No 172
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.54 E-value=7e-07 Score=90.51 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=42.5
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~~~~a~~VV~A~G~~s~ 301 (495)
+.-..+.+.|.+.+.+.. ++.++++++|+++..+ ++. +.++. .+++.+.+|.||-|.|.+|.
T Consensus 104 i~r~~l~~~L~~~~~~~~---~i~v~~~~~v~~~~~~--~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 104 CHRADLQSALLDACRNNP---GIEIKLGAEMTSQRQT--GNS-ITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred ECHHHHHHHHHHHHHhcC---CcEEEECCEEEEEecC--CCc-eEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 344567888887765532 2688999999999764 333 33433 33456678999999998875
No 173
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.54 E-value=8.8e-07 Score=90.32 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~ 116 (495)
..||+|||||.+|+++|++|. +.|.. ++|+||+.-
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~-~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALK-QAGVPDFVIFEKRDD 43 (443)
T ss_pred cccEEEECCCHHHHHHHHHHH-HcCCCcEEEEEccCC
Confidence 689999999999999999996 69998 999999853
No 174
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.53 E-value=2.1e-06 Score=88.70 Aligned_cols=57 Identities=9% Similarity=-0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+...+.+.+++.| +.++.+++|+++..+ ++ .+.+.+.+|+.+.+|.||+|+|...+
T Consensus 217 ~~~~~l~~~l~~~g----I~v~~~~~v~~i~~~--~~-~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 217 EISDALSYHLRDSG----VTIRHNEEVEKVEGG--DD-GVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHcC----CEEEECCEEEEEEEe--CC-eEEEEECCCCEEEeCEEEEeecCCcc
Confidence 45566666666655 799999999999764 23 34466666766678999999997654
No 175
>PRK07538 hypothetical protein; Provisional
Probab=98.53 E-value=8.7e-07 Score=90.21 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.||+|||||++|+++|+.|+ +.|++|+|||+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~-~~G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLH-QRGIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHH-hCCCcEEEEEcCC
Confidence 37999999999999999997 5999999999974
No 176
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-08 Score=92.79 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=36.4
Q ss_pred eceeecccccccccccccccceee-eecCCCCCcccc-ccc
Q 011027 16 QESVNVWGSRGRRQSCRTSAAFAF-KSSFFGKKPLSL-SVN 54 (495)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~~gf~~-k~~g~g~kr~~l-~~~ 54 (495)
+.+++|||+||+|||+|.++||.| |++|||+||||+ ++.
T Consensus 201 ~~~l~t~ssA~~vRr~L~~aGF~v~~r~g~grKRem~~a~~ 241 (252)
T COG4121 201 DPTLATFAAAIAVRRRLEQAGFTVEKRTGRGKKRELLRGVK 241 (252)
T ss_pred CCceechHHHHHHHHHHHHcCceeeecCCccccccchhhhc
Confidence 467899999999999999999999 999999999999 764
No 177
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.52 E-value=3.8e-07 Score=93.33 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 229 PYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 229 ~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
..+-++|-.++-+.|++.+.+.| ++++.. .|+++..++ ++.+..|.+.+|+.+.+|.||-|+|..+.
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~G----v~~~~g-~V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERG----VEVIEG-TVVDVELDE-DGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-----EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred CeeEEEeHHHHHHHHHHHHhcCC----CEEEeC-EEEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 44567888999999999999987 566655 588887764 67788999999988888999999997553
No 178
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.50 E-value=4.9e-06 Score=81.42 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=60.1
Q ss_pred ceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHHhhhc
Q 011027 232 SQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHDLLRE 310 (495)
Q Consensus 232 g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~l~~~ 310 (495)
|.-.-.++++.+.+..+++| ++++++++|.+|... ++.+..|.+.+|..+.+|+||+|.|..+.+.+.++...
T Consensus 168 GTD~l~~vvkni~~~l~~~G----~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K 240 (486)
T COG2509 168 GTDILPKVVKNIREYLESLG----GEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKK 240 (486)
T ss_pred CccchHHHHHHHHHHHHhcC----cEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHh
Confidence 34444678999999999887 699999999999987 55577899999988888999999999888877776543
No 179
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.50 E-value=4.5e-06 Score=86.48 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
.+|++|||||.+|+++|..|+ +.|.+|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~-~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAA-QLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHH-hCCCeEEEEec
Confidence 689999999999999999998 59999999998
No 180
>PRK06116 glutathione reductase; Validated
Probab=98.49 E-value=3.1e-06 Score=87.22 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++||+|||||.+|+++|..|+ ++|++|+|||+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a-~~G~~V~liE~~~ 37 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAA-MYGAKVALIEAKR 37 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCeEEEEeccc
Confidence 689999999999999999998 5999999999863
No 181
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.49 E-value=1.6e-07 Score=68.79 Aligned_cols=34 Identities=41% Similarity=0.492 Sum_probs=28.6
Q ss_pred EECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCc
Q 011027 86 IIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 86 IIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ga 120 (495)
|||||++|+++|+.|+ +.|++|+|+|+++..+|.
T Consensus 1 IiGaG~sGl~aA~~L~-~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLA-KAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHH-HTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHH-HCCCcEEEEecCcccCcc
Confidence 8999999999999998 589999999998654443
No 182
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=7.6e-07 Score=89.68 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC----eeeecCeEEEccCcch
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN----TLYSKKAIVVAAGCWS 300 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g----~~~~a~~VV~A~G~~s 300 (495)
.++++|...|+..+-. -.+.++++|..+... +.+.|.|.+.++ ...-+|.||+|+|.+.
T Consensus 91 e~~~YL~~yA~~F~l~--~~i~f~~~v~~v~~~--~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLL--KMINFNTEVVRVDSI--DKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChh--hheEecccEEEEeec--cCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 6788888887776511 257789999988775 314688887643 2444699999999995
No 183
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.45 E-value=3.7e-06 Score=86.43 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++||+|||||.+|+++|+.++ ++|++|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa-~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAA-NHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHH-hCCCcEEEEecCc
Confidence 589999999999999999998 5999999999964
No 184
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.44 E-value=5.9e-06 Score=85.61 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+||+|||||.+|+++|..|+ +.|++|+|||++.+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa-~~G~~v~lie~~~~ 38 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAG-QLGLKTALVEKGKL 38 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHH-hCCCeEEEEEccCC
Confidence 3699999999999999999998 59999999998643
No 185
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.44 E-value=3.1e-06 Score=87.00 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
++||+|||||.+|+++|+.|+ ++|++|+|+|++.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa-~~G~~V~liE~~~~ 36 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAA-EHGAKALLVEAKKL 36 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HCCCcEEEeccccc
Confidence 589999999999999999998 59999999999643
No 186
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.41 E-value=6.5e-06 Score=85.11 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||.+|+++|..|+ +.|++|+|||+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa-~~G~~V~lie~~~ 37 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAA-DLGLETVCVERYS 37 (471)
T ss_pred cceEEEECCCHHHHHHHHHHH-HCCCcEEEEecCC
Confidence 699999999999999999998 5999999999864
No 187
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.41 E-value=3.6e-06 Score=86.18 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=33.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|.||||||-|||..|-.|++...++|.|||++.
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 479999999999999999999987789999999973
No 188
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.40 E-value=1.1e-05 Score=81.38 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC--eeeecCeEEEccCcchH
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN--TLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g--~~~~a~~VV~A~G~~s~ 301 (495)
++.+.|.+.+++.| ++++.+++|+++..+ ++++..+.+.++ ..+.+|.||+|+|.+..
T Consensus 260 rL~~aL~~~l~~~G----v~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 260 RLQNALRRAFERLG----GRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHHhCC----CEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 45677777777665 689999999999876 455655555444 34678999999998643
No 189
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.40 E-value=4e-06 Score=88.37 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||.+|+++|..|+ ++|++|+|||++.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~la-r~g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAG-RAKLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHH-HCCCCEEEEecCC
Confidence 589999999999999999998 5999999999864
No 190
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.38 E-value=2.1e-06 Score=74.66 Aligned_cols=35 Identities=34% Similarity=0.491 Sum_probs=29.0
Q ss_pred EEECCCHHHHHHHHHHHhcC----CccEEEEcCCcCCCC
Q 011027 85 IIIGAGIIGLTIARQLLVGS----DLSVAVVDKVVPCSG 119 (495)
Q Consensus 85 vIIGaGiaGls~A~~La~~~----G~~V~liE~~~~~~g 119 (495)
+|||+|++|++++.+|+++. ..+|+|+|+...+.|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G 39 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAG 39 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcccc
Confidence 59999999999999998642 679999999655434
No 191
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.38 E-value=4.2e-06 Score=87.61 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
..+.+.+.+.+++++ +.++++++|+++... +..+.|.+.+|..+.+|.||+|+|+..
T Consensus 266 ~~l~~~l~~~~~~~g----v~i~~~~~V~~I~~~---~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYD----VDIMNLQRASKLEPA---AGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCC----CEEEcCCEEEEEEec---CCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 355666666666655 688889999998774 235778777776677899999999854
No 192
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.38 E-value=3.1e-06 Score=78.72 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCccc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATG 122 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~ 122 (495)
.|+|||+|.||++++..+. ..|-.|+|+|+....+|.|-
T Consensus 11 pvvVIGgGLAGLsasn~ii-n~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDII-NKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHH-hcCCeEEEEeccCCcCCcce
Confidence 4899999999999999998 56767999999865455544
No 193
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.3e-06 Score=80.42 Aligned_cols=35 Identities=40% Similarity=0.558 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~ 116 (495)
.+||+|||||++|+++|.+++ +++++ ++|+|+..+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~-r~~l~~~li~~~~~~ 38 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAA-RAGLKVVLILEGGEP 38 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHH-HcCCCcEEEEecCCc
Confidence 689999999999999999998 69988 767666544
No 194
>PLN02568 polyamine oxidase
Probab=98.35 E-value=2.5e-05 Score=81.59 Aligned_cols=55 Identities=5% Similarity=-0.055 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
..+++.|.+.+.. -.++++++|++|... ++ .+.|++.+|+.+.+|+||+|.-...
T Consensus 242 ~~Li~~La~~L~~------~~I~ln~~V~~I~~~--~~-~v~V~~~dG~~~~aD~VIvTvPl~v 296 (539)
T PLN02568 242 LSVIEALASVLPP------GTIQLGRKVTRIEWQ--DE-PVKLHFADGSTMTADHVIVTVSLGV 296 (539)
T ss_pred HHHHHHHHhhCCC------CEEEeCCeEEEEEEe--CC-eEEEEEcCCCEEEcCEEEEcCCHHH
Confidence 3567777665421 158899999999875 33 4678888887677899999987543
No 195
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=79.85 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
..+|+|||+||+||++||.|+ +-.+|||+|++...+|
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls--~rhdVTLfEA~~rlGG 44 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLS--RRHDVTLFEADRRLGG 44 (447)
T ss_pred CcceEEEcccchhhhhHHhhh--cccceEEEeccccccC
Confidence 578999999999999999996 4479999999865444
No 196
>PLN02507 glutathione reductase
Probab=98.34 E-value=1.1e-05 Score=84.00 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
++||+|||||.+|..+|..|+ +.|.+|+|||+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~-~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSA-NFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHH-HCCCeEEEEec
Confidence 689999999999999999998 59999999997
No 197
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=1.1e-05 Score=83.55 Aligned_cols=36 Identities=31% Similarity=0.582 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.++||+|||||.+|+++|+.|+ +.|++|+|||+...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa-~~G~~v~lie~~~~ 39 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAA-GLGMKVALIERGLL 39 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHH-hCCCeEEEEecCcc
Confidence 3699999999999999999998 59999999999744
No 198
>PLN02676 polyamine oxidase
Probab=98.32 E-value=1.6e-05 Score=82.21 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~~~g 119 (495)
.+||+|||||++|+++|++|+ +.|. +|+|+|+++..+|
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~-~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLS-EAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HcCCCcEEEecCCCCCCC
Confidence 579999999999999999998 5898 5999999865444
No 199
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.31 E-value=1.7e-05 Score=82.04 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+||+|||||++|+++|+.|+ +.|++|+|||+..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la-~~G~~v~lie~~~~ 35 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAA-QLGLKVALVEKEYL 35 (461)
T ss_pred ccEEEECCCHHHHHHHHHHH-hCCCeEEEEecCCC
Confidence 79999999999999999998 59999999999433
No 200
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.30 E-value=3.5e-06 Score=81.91 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred ceEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 223 SRAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 223 ~~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+++.+|.+|. ..+..++.+.+++.| .+++++..|.+|..+ ++++.+|...+|+.+.++.||--++.|-.
T Consensus 253 ~g~~~Yp~GG~---Gavs~aia~~~~~~G----aeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 253 KGGWGYPRGGM---GAVSFAIAEGAKRAG----AEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred CCcccCCCCCh---hHHHHHHHHHHHhcc----ceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 46677777775 467788888888887 489999999999887 68899999999987777877766677755
No 201
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.30 E-value=1.2e-06 Score=90.98 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCC--CcEEEEEcCC-Ce--eeecCeEEEccCcchHH
Q 011027 235 DAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNST--GEVEAVQTSK-NT--LYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 235 ~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~--~~~~~v~~~~-g~--~~~a~~VV~A~G~~s~~ 302 (495)
.-.++.++|...++..+-.. .++++++|+++.+.++. ...|.|++.+ |+ ....|.||+|+|.++.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~--~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRK--HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGG--GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred CHHHHHHHHHHHHhhhCCcc--eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 34577888888887765211 67899999999886321 2468888754 42 33469999999998753
No 202
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=1.1e-05 Score=83.56 Aligned_cols=34 Identities=41% Similarity=0.523 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||.+|+++|..|+ ++|++|+|+|+..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa-~~G~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAA-QLGLKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHH-HCCCcEEEEeccc
Confidence 689999999999999999998 5999999999875
No 203
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=2.4e-05 Score=80.86 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
++||+|||||.+|+++|..++ ++|++|+|||+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa-~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAG-QLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHH-hCCCeEEEEecC
Confidence 589999999999999999998 599999999974
No 204
>PLN02785 Protein HOTHEAD
Probab=98.26 E-value=1.3e-05 Score=84.63 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+||||||.+|+.+|..|++ +.+|+|||++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence 36999999999999999999984 58999999974
No 205
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.26 E-value=1.3e-05 Score=83.86 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
++...+.+.+++.+ +.++.+++|+++..+ + ..+.+.+.+|..+.+|.||+|+|+..
T Consensus 268 ~l~~~l~~~l~~~g----v~i~~~~~V~~I~~~--~-~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 268 QLAANLEEHIKQYP----IDLMENQRAKKIETE--D-GLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHhC----CeEEcCCEEEEEEec--C-CeEEEEECCCCEEEeCEEEECCCCCc
Confidence 34455555555544 688889999998764 2 34667777777677899999999863
No 206
>PTZ00058 glutathione reductase; Provisional
Probab=98.25 E-value=2.1e-05 Score=82.36 Aligned_cols=44 Identities=34% Similarity=0.511 Sum_probs=35.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQG 126 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g 126 (495)
.++||+|||||.+|.++|..++ +.|.+|+|||++.+ |.+--+.|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa-~~G~~ValIEk~~~--GGtCln~G 90 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAA-RNKAKVALVEKDYL--GGTCVNVG 90 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHH-HcCCeEEEEecccc--cccccccC
Confidence 4799999999999999999998 59999999999743 33334444
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.21 E-value=4.2e-05 Score=79.13 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
++||+|||||.+|+++|..|+ ++|.+|+|||++..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa-~~G~~V~lie~~~~ 38 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAA-QLGLKTAVVEKKYW 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHH-hCCCeEEEEecCCC
Confidence 589999999999999999998 59999999998644
No 208
>PRK14694 putative mercuric reductase; Provisional
Probab=98.21 E-value=3.1e-05 Score=80.11 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+||+|||||.+|+++|..|+ +.|++|+|||++.+
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~-~~g~~v~lie~~~~ 40 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKAT-ERGARVTLIERGTI 40 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHH-hCCCcEEEEEcccc
Confidence 4799999999999999999998 58999999999743
No 209
>PLN02546 glutathione reductase
Probab=98.20 E-value=2.2e-05 Score=82.29 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
++||+|||||.+|..+|..|+ ++|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa-~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFAS-NFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HCCCeEEEEec
Confidence 589999999999999999998 59999999996
No 210
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.19 E-value=1.5e-05 Score=78.51 Aligned_cols=39 Identities=33% Similarity=0.531 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
.+.|+|||||++|+++|.+|.++.+.+|+|+|..+..+|
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 568999999999999999998656679999998754333
No 211
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.19 E-value=4e-05 Score=71.87 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+||+|||+|++|+.+|.+|| .+|++|+|+|+.
T Consensus 5 ~~dvivvgaglaglvaa~elA-~aG~~V~ildQE 37 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELA-DAGKRVLILDQE 37 (552)
T ss_pred cccEEEECccHHHHHHHHHHH-hcCceEEEEccc
Confidence 689999999999999999999 599999999996
No 212
>PRK09897 hypothetical protein; Provisional
Probab=98.14 E-value=3.4e-05 Score=80.04 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCc-CCCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVV-PCSG 119 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~-~~~g 119 (495)
.+|+|||||.+|+++|.+|+++ ...+|+|||++. ++.|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcc
Confidence 4799999999999999999852 246899999963 4444
No 213
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=3.1e-06 Score=86.82 Aligned_cols=38 Identities=39% Similarity=0.559 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
..+|||||||++|++||.+|. +.|++|+|+|+++..+|
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~-~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQ-DFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHH-HcCCceEEEeccCCcCc
Confidence 578999999999999999996 69999999999876444
No 214
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.09 E-value=3.7e-05 Score=81.84 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
++||+|||+|.+|..+|..++ +.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa-~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAM-ERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHH-HCCCcEEEEeCC
Confidence 689999999999999999998 599999999975
No 215
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.08 E-value=2.7e-05 Score=75.04 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=49.8
Q ss_pred eecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCC------C---------eeeecCeEEEccC
Q 011027 233 QLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSK------N---------TLYSKKAIVVAAG 297 (495)
Q Consensus 233 ~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~------g---------~~~~a~~VV~A~G 297 (495)
.+.-.+++++|.+.+++.| ++++-...+.++..++ ++.+.+|-|+| | -.+.|+.-|+|-|
T Consensus 179 vv~L~~~v~wLg~kAEe~G----vEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 179 VVSLGQLVRWLGEKAEELG----VEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred EEEHHHHHHHHHHHHHhhC----ceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 4555789999999999998 6888888888877764 67788887753 2 2345688898887
Q ss_pred c---chHHHHHH
Q 011027 298 C---WSGSLMHD 306 (495)
Q Consensus 298 ~---~s~~l~~~ 306 (495)
. -+..+++.
T Consensus 254 c~G~Lskqi~kk 265 (621)
T KOG2415|consen 254 CHGSLSKQIIKK 265 (621)
T ss_pred ccchhHHHHHHH
Confidence 6 44455554
No 216
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.07 E-value=8.8e-05 Score=76.68 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.||+|||||.+|+.+|..|+ ++|.+|+|+|++..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~-~~g~~v~~~e~~~~ 35 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAA-QLGADVTVIERDGL 35 (466)
T ss_pred CcEEEECCCHHHHHHHHHHH-hCCCeEEEEEccCC
Confidence 47999999999999999998 59999999998753
No 217
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=3.9e-06 Score=84.03 Aligned_cols=40 Identities=30% Similarity=0.388 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC--cccC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG--ATGA 123 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g--aS~~ 123 (495)
+|+|+|||+|||+||++|+ ++|++|+|+|+++..+| +|++
T Consensus 2 rVai~GaG~AgL~~a~~La-~~g~~vt~~ea~~~~GGk~~s~~ 43 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELA-DAGYDVTLYEARDRLGGKVASWR 43 (485)
T ss_pred eEEEEcccHHHHHHHHHHH-hCCCceEEEeccCccCceeeeee
Confidence 6999999999999999999 59999999999876333 4554
No 218
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=1.6e-05 Score=79.55 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred ecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 234 LDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 234 ~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+|=..+-+.+.+.++... |+.+ .+..|++|..++ +.++++|.|.+|..+.|+.||++||.+..
T Consensus 97 aDk~~Y~~~mk~~le~~~---NL~l-~q~~v~dli~e~-~~~v~GV~t~~G~~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 97 ADKWLYRRAMKNELENQP---NLHL-LQGEVEDLIVEE-GQRVVGVVTADGPEFHAKAVVLTTGTFLR 159 (621)
T ss_pred hhHHHHHHHHHHHHhcCC---Ccee-hHhhhHHHhhcC-CCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence 333445555555555433 3444 456788877652 33699999999998889999999998654
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.03 E-value=9.3e-05 Score=75.09 Aligned_cols=35 Identities=37% Similarity=0.513 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.++|++|||||.+|..+|..++ +.|.+|.|+|+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa-~~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAA-QLGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHH-hCCCCEEEEeecC
Confidence 3699999999999999999999 4999999999984
No 220
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.02 E-value=0.00011 Score=76.29 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
++||+|||||.+|..+|+.++ +.|.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa-~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAA-DYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHH-HCCCeEEEEecc
Confidence 489999999999999999998 599999999985
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=97.96 E-value=8.8e-06 Score=85.01 Aligned_cols=47 Identities=30% Similarity=0.493 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC-CccEEEEcCCcCCCCc--ccCCccee
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS-DLSVAVVDKVVPCSGA--TGAGQGYI 128 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~-G~~V~liE~~~~~~ga--S~~~~g~i 128 (495)
.+||+|||||++||++|++|+ +. |++|+|+|+++..+|. |.+..|+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~-~~~g~~v~vlEa~~rvGGr~~t~~~~g~~ 61 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALA-SKHGVNVLVTEARDRVGGNITSVSEDGFI 61 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HhcCCCEEEEecCCCCCCceeEeccCCeE
Confidence 578999999999999999997 47 9999999998543333 33334544
No 222
>PLN02268 probable polyamine oxidase
Probab=97.96 E-value=8.1e-06 Score=83.76 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ga 120 (495)
+|+|||||++||++|+.|. +.|++|+|+|+++..+|.
T Consensus 2 ~VvVIGaGisGL~aA~~L~-~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALH-DASFKVTLLESRDRIGGR 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCCCCCce
Confidence 6999999999999999996 589999999998654443
No 223
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.94 E-value=0.00089 Score=66.48 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCe-eeecCeEEEccCcchHHHHHH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT-LYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~-~~~a~~VV~A~G~~s~~l~~~ 306 (495)
|.++.....+..+++| |++++++.|+++..+ .|++.+|. .+.++.||.|+|.-++.+...
T Consensus 208 ~~~l~~~a~~~L~~~G----V~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 208 PPKLSKYAERALEKLG----VEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CHHHHHHHHHHHHHCC----CEEEcCCceEEECCC-------cEEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 4577777777777776 899999999998753 36666665 366799999999999888776
No 224
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.93 E-value=8.9e-06 Score=83.87 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCCcCCCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKVVPCSG 119 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~~~~~g 119 (495)
+|+|||||++||++|+.|+ +.| ++|+|+|+++..+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~-~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLH-KKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHH-HhCCCCCEEEEEcCCCCcc
Confidence 5999999999999999997 577 89999999755444
No 225
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.92 E-value=0.0003 Score=72.88 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC-CccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS-DLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~-G~~V~liE~~ 114 (495)
++||+|||||.+|..+|..+++ . |.+|+|||++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 6999999999999999999984 5 8999999984
No 226
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.91 E-value=1.1e-05 Score=83.58 Aligned_cols=38 Identities=32% Similarity=0.430 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcC----CccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGS----DLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~----G~~V~liE~~~~~~g 119 (495)
..||+|||||++||++|+.|++ + |++|+|+|++...+|
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcCcc
Confidence 3689999999999999999974 6 999999999865443
No 227
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.90 E-value=0.00049 Score=71.66 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+||+|||||.+|+++|..|+ ++|.+|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa-~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAA-AHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHH-hCCCeEEEEecc
Confidence 589999999999999999998 599999999974
No 228
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=0.00015 Score=76.71 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
...++..|.+.+.+.| ++++.++.+++|..++ ++++.++.. .+|+ .+.|+.||+|||.+..
T Consensus 125 G~~i~~~L~~~~~~~g----i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNG----TTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccC----CEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 3568888888777654 7999999999998742 577888764 3553 4567999999999775
No 229
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=0.00023 Score=73.45 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+|+|||||.+|+++|..|+ +.|.+|+|||++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~-~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAA-QNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHH-hCCCcEEEEECCcc
Confidence 6999999999999999998 59999999999754
No 230
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.86 E-value=1.7e-05 Score=78.68 Aligned_cols=37 Identities=41% Similarity=0.599 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
+||+|||||++|+++|+.|+ +.|.+|+|||++...+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La-~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILA-QLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHH-hCCCeEEEEecCCCCCC
Confidence 68999999999999999998 58999999999754333
No 231
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=1.9e-05 Score=81.12 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcccCCcc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGATGAGQG 126 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS~~~~g 126 (495)
.+||+|||||.+|+++|+.|+ ++|++|+|||+.....|.+..+.|
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la-~~g~~V~lie~~~~~~GG~~~~~g 47 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLA-KAGWRVALIEQSNAMYGGTCINIG 47 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHH-HCCCeEEEEcCCCCccceeEeecc
Confidence 589999999999999999998 599999999997433344444444
No 232
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.82 E-value=1.9e-05 Score=79.31 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCCcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKVVP 116 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~~~ 116 (495)
.|+||||||+||++||.|. +++ .+|+|+|+++.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~-k~~p~~~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQ-KAGPDVEVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHH-HhCCCCcEEEEecCCC
Confidence 5899999999999999997 588 99999999754
No 233
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.80 E-value=2.4e-05 Score=77.04 Aligned_cols=40 Identities=35% Similarity=0.545 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGAT 121 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS 121 (495)
.+||||||||.+||++|+.|. +.|++|+|+|.++-.+|.+
T Consensus 7 ~~~viivGaGlaGL~AA~eL~-kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELK-KAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCcEEEECCchHHHHHHHHHh-hcCcEEEEEeccCCcCcee
Confidence 689999999999999999995 7999999999987655554
No 234
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.79 E-value=2.3e-05 Score=81.14 Aligned_cols=60 Identities=8% Similarity=-0.070 Sum_probs=41.4
Q ss_pred EeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCc
Q 011027 227 FLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGC 298 (495)
Q Consensus 227 ~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~ 298 (495)
+.+.+|. ..+++.|.+.+.. ++++++++|++|..+ ++ .|.|.+.+|+.+.+|.||+|+-.
T Consensus 219 ~~~~gG~---~~l~~~l~~~l~~------~~i~~~~~V~~I~~~--~~-~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 219 VSFKGGL---STIIDRLEEVLTE------TVVKKGAVTTAVSKQ--GD-RYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred EeeCCCH---HHHHHHHHHhccc------ccEEcCCEEEEEEEc--CC-EEEEEECCCCEEEeCEEEECCCH
Confidence 3344443 4567777665432 268899999999875 33 36788777766667999999854
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.78 E-value=0.00054 Score=69.32 Aligned_cols=59 Identities=3% Similarity=0.081 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHH
Q 011027 236 AMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 236 p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~ 302 (495)
+..+...+.+.+++.| ++++++++|+++.. ++ .+.+.+.+|+.+.+|.||+|+|...+.
T Consensus 185 ~~~~~~~l~~~l~~~G----V~i~~~~~V~~i~~---~~-~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 185 PPPVQRYLLQRHQQAG----VRILLNNAIEHVVD---GE-KVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred CHHHHHHHHHHHHHCC----CEEEeCCeeEEEEc---CC-EEEEEECCCCEEECCEEEECCCCChhh
Confidence 3445556666666655 79999999999864 22 345677788777889999999986653
No 236
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.77 E-value=2.7e-05 Score=77.51 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..||+|||||++|+.+|+.|+ ++|++|+|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLA-r~Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLA-KRGVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHH-hCCCcEEEEEccC
Confidence 358999999999999999999 5999999999864
No 237
>PTZ00367 squalene epoxidase; Provisional
Probab=97.76 E-value=2.5e-05 Score=81.91 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||++|+++|+.|+ +.|++|+|||+..
T Consensus 33 ~~dViIVGaGiaGlalA~aLa-r~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALS-KQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHH-hcCCEEEEEcccc
Confidence 589999999999999999998 5999999999964
No 238
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.75 E-value=2.6e-05 Score=76.73 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 79 CHTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 79 ~~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
+...+++|||||++|+++|+.|| +.|++|.|+||+..-+|
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La-~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELA-DMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHH-HcCCeEEEEecCCcccc
Confidence 34578999999999999999999 59999999999855444
No 239
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.67 E-value=5.1e-05 Score=71.15 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
++||+|||||++|+++|.+|+ ++|+++.||.++..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~-~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQ-QAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHH-hcCCcEEEEeCChh
Confidence 689999999999999999997 69999999998743
No 240
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.62 E-value=6.4e-05 Score=77.18 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++||+|||||.+|+++|..|+ ++|.+|+|||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~-~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLA-SAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHH-hCCCEEEEEecCC
Confidence 589999999999999999998 5999999999974
No 241
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.60 E-value=0.00041 Score=71.42 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~ 115 (495)
+|+|||||.+|+++|..|++ . +.+|+|||++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~-~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKR-LNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH-HCCCCcEEEEECCC
Confidence 59999999999999999974 4 46999999974
No 242
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.59 E-value=0.0036 Score=62.54 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHH
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMH 305 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~ 305 (495)
+...+.+.+++.| ++++.+++|+++.. + .+.+.+|..+.+|.||+|+|.....++.
T Consensus 193 ~~~~~~~~l~~~g----V~v~~~~~v~~i~~----~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~ 248 (364)
T TIGR03169 193 VRRLVLRLLARRG----IEVHEGAPVTRGPD----G---ALILADGRTLPADAILWATGARAPPWLA 248 (364)
T ss_pred HHHHHHHHHHHCC----CEEEeCCeeEEEcC----C---eEEeCCCCEEecCEEEEccCCChhhHHH
Confidence 4455555566654 79999999988742 2 3566677777789999999987665444
No 243
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=8.3e-05 Score=69.65 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+|++|||||++|+.+|..|+ +.|.+|.|+||+.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~-~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAA-QLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHH-HcCCEEEEEecccc
Confidence 78999999999999999887 59999999999854
No 244
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00071 Score=66.66 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+||||||||=||+-+|.+.| +.|.+.+|+-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaa-R~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAA-RLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHH-hcCCceEEeecc
Confidence 3799999999999999999988 699999999886
No 245
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.55 E-value=8e-05 Score=74.63 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
||+|||||++|+.+|+.|+ ++|++|+|+|++.
T Consensus 2 ~VvVIGgGlAGleaA~~LA-r~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLA-QAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHH-hCCCcEEEEeccc
Confidence 6999999999999999998 5999999999863
No 246
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.00058 Score=68.08 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=32.2
Q ss_pred EecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 259 FYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 259 ~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
+.+++++++.+.+ ++..+.+.+.+|....||.+|+|||+-..
T Consensus 124 ~~~~~a~~~~~~~-n~~~~~~~~~~g~~~~ad~~Vlatgh~~~ 165 (474)
T COG4529 124 TIREEATSVRQDT-NAGGYLVTTADGPSEIADIIVLATGHSAP 165 (474)
T ss_pred EEeeeeecceecc-CCceEEEecCCCCeeeeeEEEEeccCCCC
Confidence 3466777776654 67788899999988778999999997543
No 247
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.53 E-value=9.8e-05 Score=81.50 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.||+++|+.|+ ++|++|+|+|+...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LA-r~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLA-RAGHPVTVFEKKEK 571 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HCCCeEEEEecccc
Confidence 578999999999999999998 59999999999754
No 248
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.51 E-value=0.0027 Score=61.10 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ga 120 (495)
.+||+|||+|..|-.+|...+| .|++.+.+|++...+|+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~~LGGT 77 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRGTLGGT 77 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHH-hcceeEEEeccCccCce
Confidence 6999999999999999999985 99999999998654444
No 249
>PRK07846 mycothione reductase; Reviewed
Probab=97.51 E-value=0.0012 Score=67.91 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=27.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+|++|||||.+|.++|..+ .|.+|+|||++..
T Consensus 2 yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~~ 33 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF---ADKRIAIVEKGTF 33 (451)
T ss_pred CCEEEECCCHHHHHHHHHH---CCCeEEEEeCCCC
Confidence 7999999999999888652 5999999998654
No 250
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.51 E-value=0.0001 Score=76.23 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+||+|||||.+|+++|..|+ ++|++|+|||++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa-~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAA-ELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHH-HCCCeEEEEeCCcc
Confidence 68999999999999999998 59999999999754
No 251
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.51 E-value=0.0046 Score=62.10 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH-HHHHH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG-SLMHD 306 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~-~l~~~ 306 (495)
..+...+.+.+++.| +.++++++|+++..+ +..+.+.+.+|+.+.+|.||+|+|...+ .+...
T Consensus 183 ~~~~~~l~~~l~~~g----V~i~~~~~v~~i~~~---~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~ 246 (377)
T PRK04965 183 PEVSSRLQHRLTEMG----VHLLLKSQLQGLEKT---DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARR 246 (377)
T ss_pred HHHHHHHHHHHHhCC----CEEEECCeEEEEEcc---CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHH
Confidence 344555666666655 788999999998764 2345677788877778999999998664 34443
No 252
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.49 E-value=0.00011 Score=75.89 Aligned_cols=34 Identities=38% Similarity=0.540 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+||+|||||.+|+++|..|+ +.|++|+|||++.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~-~~g~~v~lie~~~ 36 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAA-KLGKKVALIEKGP 36 (460)
T ss_pred cccEEEECCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence 589999999999999999998 5999999999953
No 253
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.48 E-value=0.00027 Score=68.83 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccE--EEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSV--AVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V--~liE~~~~ 116 (495)
..+|+|+||||+||++||+|++ ++-+| +|+|+...
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r-~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLAR-LGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHh-cCCCceEEEEecCCc
Confidence 5789999999999999999984 66554 56998754
No 254
>PRK10262 thioredoxin reductase; Provisional
Probab=97.48 E-value=0.00012 Score=71.84 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.+||+|||||.+|+++|..|+ ++|++|+|||+...
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~-~~g~~~~~ie~~~~ 40 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAA-RANLQPVLITGMEK 40 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHH-HCCCCeEEEEeecC
Confidence 689999999999999999998 58999999997543
No 255
>PRK12831 putative oxidoreductase; Provisional
Probab=97.47 E-value=0.00016 Score=74.55 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..||+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~-~~G~~V~v~e~~~~ 174 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLA-KMGYDVTIFEALHE 174 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHH-hCCCeEEEEecCCC
Confidence 579999999999999999998 59999999998643
No 256
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.44 E-value=0.00015 Score=65.81 Aligned_cols=31 Identities=39% Similarity=0.616 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
||+|||||.+|+++|..|+ +.|.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~-~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELA-RPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHH-HTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHh-cCCCeEEEEecc
Confidence 6999999999999999998 699999999774
No 257
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.00016 Score=77.94 Aligned_cols=38 Identities=37% Similarity=0.619 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
..+|+|||||++|+++|+.|+ ++|++|+|+|++...+|
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~-~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLL-SMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HCCCcEEEEeccccCCC
Confidence 578999999999999999997 59999999999754333
No 258
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.41 E-value=0.00088 Score=68.41 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|||||||.+|+++|..|. ..+.+|+|||++.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~-~~~~~ItlI~~~~ 43 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLD-PKKYNITVISPRN 43 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhC-cCCCeEEEEcCCC
Confidence 578999999999999999995 4678999999863
No 259
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.40 E-value=0.00023 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+|+|||||.+|+-+|..|+ +.|.+|+||++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~-~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA-ELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH-HTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHH-HhCcEEEEEeccch
Confidence 3899999999999999998 59999999999743
No 260
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.40 E-value=0.00015 Score=80.47 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.||+++|+.|+ ++|++|+|+|+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~La-r~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLA-VEGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HCCCeEEEEeeCC
Confidence 578999999999999999998 5999999999974
No 261
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.40 E-value=0.00022 Score=77.64 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.||+++|++|+ ++|++|+|+|+..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La-~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLL-RSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHH-hCCCeEEEEcccc
Confidence 578999999999999999998 5999999999853
No 262
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.39 E-value=0.00023 Score=80.05 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=33.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCS 118 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ 118 (495)
..+||+|||||++|+++|+.|+ +.|.+|+|+|+....+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aa-r~G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAA-RAGARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCCCC
Confidence 3689999999999999999998 5999999999975433
No 263
>PLN02529 lysine-specific histone demethylase 1
Probab=97.38 E-value=0.00023 Score=76.43 Aligned_cols=35 Identities=43% Similarity=0.577 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||++|+++|+.|+ ++|++|+|+|+++.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~-~~g~~v~v~E~~~~ 194 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLL-SFGFKVVVLEGRNR 194 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HcCCcEEEEecCcc
Confidence 578999999999999999997 59999999999754
No 264
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.35 E-value=0.00027 Score=72.55 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHh-cCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV-GSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~-~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|++ .+|++|+|+|+...
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 5689999999999999999973 27999999999753
No 265
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.34 E-value=0.0028 Score=67.11 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEc---CCCe--eeecCeEEEccCcchH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQT---SKNT--LYSKKAIVVAAGCWSG 301 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~---~~g~--~~~a~~VV~A~G~~s~ 301 (495)
..+++.|.+.+++.| +.++.++.+++|..+ ++++.++.. .+|+ .+.|+.||+|||.+..
T Consensus 119 ~~i~~~L~~~~~~~g----i~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 119 HAILHTLYQQNLKAD----TSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHHHHHhCC----CEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 468888888887654 799999999999875 678888764 3453 4567999999999765
No 266
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.33 E-value=0.00032 Score=72.07 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~-~~G~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELA-KAGHSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHH-HCCCcEEEEecCC
Confidence 579999999999999999998 5999999999964
No 267
>PRK13748 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.00023 Score=75.63 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.+||+|||||.+|+++|..|+ +.|.+|+|||++.+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~-~~G~~v~lie~~~~ 132 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAV-EQGARVTLIERGTI 132 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHH-hCCCeEEEEecCcc
Confidence 699999999999999999998 59999999999743
No 268
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.28 E-value=0.0003 Score=77.48 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 539 gKkVaIIGgGPAGLsAA~~La-r~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLA-RAGHPVTVFEREEN 573 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCeEEEEecccc
Confidence 578999999999999999998 59999999999754
No 269
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.27 E-value=0.00038 Score=70.61 Aligned_cols=36 Identities=33% Similarity=0.460 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
...|+|||||.+|+.+|.+|+.+.|++|+|+|+...
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 357999999999999999876457999999999754
No 270
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.26 E-value=0.0004 Score=76.17 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~-~~G~~V~v~e~~~ 464 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLA-KRGYDVTVFEALH 464 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 578999999999999999998 5999999999864
No 271
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.18 E-value=0.00051 Score=71.10 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~-~~G~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLA-RAGHKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHH-hCCCcEEEEecCCC
Confidence 578999999999999999998 59999999999743
No 272
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.17 E-value=0.00044 Score=74.58 Aligned_cols=35 Identities=37% Similarity=0.430 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~-~~G~~V~V~E~~~~ 361 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLA-RNGVAVTVYDRHPE 361 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence 578999999999999999998 59999999998643
No 273
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.17 E-value=0.00057 Score=70.53 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ ++|++|+|+|+...
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~-~~g~~V~lie~~~~ 174 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLA-RKGYDVTIFEARDK 174 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHH-hCCCeEEEEccCCC
Confidence 578999999999999999998 59999999999753
No 274
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.17 E-value=0.00048 Score=77.29 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ ++|++|+|+|+...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La-~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLV-KYGVDVTVYEALHV 464 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCcEEEEecCCC
Confidence 468999999999999999998 59999999998643
No 275
>PRK14727 putative mercuric reductase; Provisional
Probab=97.16 E-value=0.00042 Score=71.96 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
++||+|||||.+|+++|+.|+ +.|.+|+|+|++.
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~-~~g~~v~~ie~~~ 49 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAA-EHGARVTIIEGAD 49 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHH-hCCCeEEEEEccC
Confidence 689999999999999999998 5999999999973
No 276
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.13 E-value=0.00063 Score=73.19 Aligned_cols=35 Identities=40% Similarity=0.412 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La-~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLL-RKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCcEEEEecCCC
Confidence 468999999999999999998 59999999999754
No 277
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.12 E-value=0.00052 Score=71.28 Aligned_cols=34 Identities=41% Similarity=0.586 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
+||+|||+|++|+++|+.|+ +.|++|+|||++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~-~~g~~v~~~e~~~~ 34 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCV-DAGLKVAMVEIGAA 34 (544)
T ss_pred CcEEEECCchHHHHHHHHHH-HCCCeEEEEeccCc
Confidence 58999999999999999998 58999999999744
No 278
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.08 E-value=0.00045 Score=75.75 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhcC--CccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~~ 115 (495)
+|+|||||++|+++|+.|++ . |++|+|+|+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~-~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKL-LDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCeEEEEecCC
Confidence 69999999999999999974 5 89999999975
No 279
>PLN03000 amine oxidase
Probab=97.05 E-value=0.0007 Score=73.32 Aligned_cols=38 Identities=37% Similarity=0.558 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
..+|+|||||++|+++|+.|. +.|++|+|+|++...+|
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~-~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLM-RFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCEEEECccHHHHHHHHHHH-HCCCcEEEEEccCcCCC
Confidence 578999999999999999997 59999999999755333
No 280
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.04 E-value=0.012 Score=59.29 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhc---CCccEEEEcCCcCCCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVG---SDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~---~G~~V~liE~~~~~~ga 120 (495)
.++=|||+|||+|++|.+|.+. .|-+|+|+|+....+|+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4678999999999999999853 46799999998765544
No 281
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.02 E-value=0.0002 Score=62.94 Aligned_cols=41 Identities=37% Similarity=0.565 Sum_probs=33.7
Q ss_pred cccEEEECCCHHHHHHHHHHHh-cCCccEEEEcCCcCCCCcc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV-GSDLSVAVVDKVVPCSGAT 121 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~-~~G~~V~liE~~~~~~gaS 121 (495)
+.||+|||+|-+|+++||..++ +...+|.|||+....+|.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 5799999999999999999984 4679999999974444443
No 282
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.99 E-value=0.01 Score=58.90 Aligned_cols=66 Identities=15% Similarity=0.050 Sum_probs=48.4
Q ss_pred eEEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCC-eeeecCeEEEccCcch
Q 011027 224 RAAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKN-TLYSKKAIVVAAGCWS 300 (495)
Q Consensus 224 ~~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g-~~~~a~~VV~A~G~~s 300 (495)
.|-+||... ....++..|...+++.| |.++++++|++| + ++ .+.+.+..+ ..+.+|.||+|||..+
T Consensus 75 ~grvfP~S~--~A~sVv~~L~~~l~~~g----V~i~~~~~V~~i--~--~~-~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 75 SGRVFPVEM--KAAPLLRAWLKRLAEQG----VQFHTRHRWIGW--Q--GG-TLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCEECCCCC--CHHHHHHHHHHHHHHCC----CEEEeCCEEEEE--e--CC-cEEEEECCCceEEecCEEEEcCCCcc
Confidence 345666543 45678999999998876 799999999998 2 22 266776533 4466799999999854
No 283
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.96 E-value=0.0013 Score=67.91 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~-~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILA-RAGVQVVVFDRHPE 175 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEecCCC
Confidence 578999999999999999998 59999999999743
No 284
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.95 E-value=0.014 Score=64.56 Aligned_cols=58 Identities=5% Similarity=0.036 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
..+.+.+..++.| |.+++++.|+++..+. .+....+...+|+.+.+|.||+|+|.-.+
T Consensus 189 ~~~~l~~~L~~~G----V~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 189 GGEQLRRKIESMG----VRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred HHHHHHHHHHHCC----CEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 3455556666665 7999999999997532 23345677788887888999999997554
No 285
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.93 E-value=0.0014 Score=70.57 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~-~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILA-RAGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHH-HcCCcEEEEeCCCC
Confidence 578999999999999999998 59999999999754
No 286
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.90 E-value=0.019 Score=56.03 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhc---CCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVG---SDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~---~G~~V~liE~~~~ 116 (495)
.+||+|||||.+|++.|..|..+ ..++|.|+|..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 69999999999999999999532 3579999998743
No 287
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.83 E-value=0.0017 Score=64.64 Aligned_cols=35 Identities=40% Similarity=0.385 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|..|+ +.|++|+|+|+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~-~~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLA-CLGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHH-HCCCcEEEEeCCCC
Confidence 468999999999999999998 58999999999754
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.82 E-value=0.024 Score=62.56 Aligned_cols=55 Identities=9% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchH
Q 011027 240 VAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSG 301 (495)
Q Consensus 240 ~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~ 301 (495)
.+.+.+..++.| +.+++++.|+++.. ++++..|.+.+|+.+.+|.||+|+|...+
T Consensus 185 ~~~l~~~l~~~G----V~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 185 GRLLQRELEQKG----LTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHcC----CEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 344555555555 79999999999864 34456777888887888999999997543
No 289
>PLN02976 amine oxidase
Probab=96.78 E-value=0.0016 Score=73.43 Aligned_cols=38 Identities=37% Similarity=0.549 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSG 119 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~g 119 (495)
..+|+|||||++|+++|++|+ +.|++|+|||++...+|
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~-~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQ-RQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHH-HCCCcEEEEeeccCCCC
Confidence 578999999999999999997 59999999999744333
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.76 E-value=0.0018 Score=67.19 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~-~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLN-RAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HcCCeEEEEecCCC
Confidence 468999999999999999998 59999999998753
No 291
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.75 E-value=0.0011 Score=67.36 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.+|+|||||.+|+++|+.|+ +.|++|+++|+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~-~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLS-RAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHH-hCCCeEEEeCCcCC
Confidence 67999999999999999998 59999999999643
No 292
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0049 Score=58.36 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=40.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC-CCCcccCCccee
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP-CSGATGAGQGYI 128 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~-~~gaS~~~~g~i 128 (495)
-.+|.+|||||-.||++|-+.+ ..|.+|.++|--.+ ..|+|+--+|-.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa-~~G~kV~~lDfV~PtP~GtsWGlGGTC 66 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAA-DLGAKVACLDFVKPTPQGTSWGLGGTC 66 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHH-hcCCcEEEEeecccCCCCCccccCcee
Confidence 3799999999999999999998 59999999998643 678887666544
No 293
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.69 E-value=0.0026 Score=67.48 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
..+|+|||||.+|+++|+.|+ +.|++|+|+|+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~-~~G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLR-RMGHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence 468999999999999999997 59999999999754
No 294
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.56 E-value=0.011 Score=58.21 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=25.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|+||.|+++|++|..|.+....++..+|+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 47999999999999999999754459999999863
No 295
>PRK13984 putative oxidoreductase; Provisional
Probab=96.52 E-value=0.0031 Score=67.57 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCS 118 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~ 118 (495)
..+|+|||+|.+|+++|+.|+ +.|++|+|||+.....
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~-~~G~~v~vie~~~~~g 319 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLA-TMGYEVTVYESLSKPG 319 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HCCCeEEEEecCCCCC
Confidence 578999999999999999997 5999999999975433
No 296
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.013 Score=52.24 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHH
Q 011027 237 MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSL 303 (495)
Q Consensus 237 ~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l 303 (495)
..++..|++...+.| .+++ -..|.++... .+...|.+..+.+. +|.||+|+|+-+.+|
T Consensus 70 ~~l~d~mrkqs~r~G----t~i~-tEtVskv~~s---skpF~l~td~~~v~-~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFG----TEII-TETVSKVDLS---SKPFKLWTDARPVT-ADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhc----ceee-eeehhhcccc---CCCeEEEecCCcee-eeeEEEecccceeee
Confidence 357778888887776 2443 3456776653 34566777666665 599999999988765
No 297
>PRK06116 glutathione reductase; Validated
Probab=96.47 E-value=0.029 Score=57.77 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||+|.+|+-+|..|+ +.|.+|++++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~-~~g~~Vtlv~~~ 199 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLN-GLGSETHLFVRG 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEecC
Confidence 357999999999999999997 589999999985
No 298
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.33 E-value=0.03 Score=55.23 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~ 114 (495)
..+|+|||||.+++-++..|++ ++ .+|+++-|+
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~-~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLR-RGPEAKVTWISRS 224 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHH-H-TTEEEEEEESS
T ss_pred CCeEEEECCcHhHHHHHHHHHh-CCCCcEEEEEECC
Confidence 5789999999999999999985 44 589999885
No 299
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0037 Score=58.97 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..|-|||||.||.-+||.+| ++|..|.|+|-+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA-~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIA-KRGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHH-HcCCcEEEEEccc
Confidence 45899999999999999999 5999999999763
No 300
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0066 Score=58.48 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCcCCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVVPCS 118 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~~~~ 118 (495)
..|+|||+|.||.-||++|.++ .+.+|+|+|+.....
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 4799999999999999999863 579999999986543
No 301
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.18 E-value=0.0057 Score=62.98 Aligned_cols=33 Identities=30% Similarity=0.358 Sum_probs=27.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
++|++|||+|.+|..+|.. ..|.+|+|||++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~---~~g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR---FADKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHHH---HCCCeEEEEeCCCC
Confidence 5899999999999888643 26999999998654
No 302
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.10 E-value=0.0069 Score=53.79 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|.|||+|..|...|..++ ..|++|+|+|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECC
Confidence 3899999999999999999 589999999984
No 303
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.02 E-value=0.095 Score=52.40 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 239 AVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 239 ~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
+-+.+....++.| ++++.++.+.++..+. ++++..|.+.+|+...+|.||+++|+-.
T Consensus 257 i~~~~~~y~e~kg----Vk~~~~t~~s~l~~~~-~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 257 IGQFYEDYYENKG----VKFYLGTVVSSLEGNS-DGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHhcC----eEEEEecceeecccCC-CCcEEEEEeccCCEeccCeEEEeecccc
Confidence 3344444445444 7999999999998763 6889999999999888999999999743
No 304
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0094 Score=64.69 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
-..|+|||+|.+||++|-.|- +.|+.|+|+||.+.
T Consensus 1785 g~~vaiigsgpaglaaadqln-k~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLN-KAGHTVTVYERSDR 1819 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHh-hcCcEEEEEEecCC
Confidence 478999999999999999996 69999999999653
No 305
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.94 E-value=0.008 Score=61.67 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhc-CCccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVG-SDLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~-~G~~V~liE~~~ 115 (495)
+|+|||||.+|+++|..|.+. .+.+|+|||++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 699999999999999999641 368999999974
No 306
>PRK14694 putative mercuric reductase; Provisional
Probab=95.91 E-value=0.099 Score=54.16 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+++|||+|.+|+-.|..|+ +.|.+|+|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~-~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFA-RLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEECC
Confidence 357999999999999999997 599999999863
No 307
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.74 E-value=0.059 Score=55.94 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.0
Q ss_pred cccEEEECCCHHHHHHHHHHHh--cCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV--GSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~--~~G~~V~liE~~ 114 (495)
..+++|||||.+|+-.|..++. +.|.+|+|+|+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 3579999999999999976642 359999999975
No 308
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.69 E-value=0.014 Score=50.71 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|+|||||-.|.++|..|+ ++|++|+|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la-~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA-DNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH-HCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCEEEEEecc
Confidence 3899999999999999998 599999999985
No 309
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.29 E-value=0.025 Score=48.55 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
|+|||+|.+|+..|+.|++ .|.+|+++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 6899999999999999984 99999999985
No 310
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.14 E-value=0.12 Score=50.29 Aligned_cols=91 Identities=26% Similarity=0.305 Sum_probs=58.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCCcC-CCC-------cccCC-----------------cceeeecc-CC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKVVP-CSG-------ATGAG-----------------QGYIWMVH-RT 134 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~~~-~~g-------aS~~~-----------------~g~i~~~~-~~ 134 (495)
+|.|||+|.+|+++|+.|+ ..| ..|+|+|++.. ..+ +.... ..++.... ..
T Consensus 2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~ 80 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQK 80 (308)
T ss_pred EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCC
Confidence 5899999999999999998 478 58999998632 222 10000 01111111 12
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCCCccccceEeeeeEEEecCHHH
Q 011027 135 PGSEIWDLALRSNKLWKMLADSLRDQGLDPLQVIGWKQTGSLLIGRTPEE 184 (495)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 184 (495)
+.....++......+++++.+.+.+. ...|.+.+..++.+
T Consensus 81 ~~~~r~dl~~~n~~i~~~~~~~l~~~----------~~~giiiv~tNP~d 120 (308)
T cd05292 81 PGETRLDLLKRNVAIFKEIIPQILKY----------APDAILLVVTNPVD 120 (308)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----------CCCeEEEEecCcHH
Confidence 23345677788888999988887653 34577777776543
No 311
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.12 E-value=0.023 Score=55.28 Aligned_cols=31 Identities=35% Similarity=0.409 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||+|..|.+.|..|+ ++|++|+++|+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFA-RAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHH-HCCCeeEEEeCC
Confidence 5999999999999999998 589999999986
No 312
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.99 E-value=0.022 Score=50.78 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.5
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|.|||.|..|+.+|..|| +.|++|+-+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALA-EKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHH-hCCCEEEEEeCC
Confidence 5899999999999999999 599999999986
No 313
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.97 E-value=0.034 Score=53.42 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|..|...|..|+ ..|++|+++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECC
Confidence 36999999999999999998 599999999986
No 314
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.97 E-value=1.4 Score=44.61 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=41.6
Q ss_pred EEEeCCCceecHHHHH-HHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcch
Q 011027 225 AAFLPYDSQLDAMLAV-AYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWS 300 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~-~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s 300 (495)
.+++|.+|. ..++ +.|.+.+++.| +.++++++|++|..+ ++++..+.+.+|+.+.+|.||+|+-...
T Consensus 187 ~~~~~~gG~---~~~~~~~l~~~l~~~g----~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 187 DLLLPRVPL---SELFPEPARRWLDSRG----GEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred eeeeeCCCH---HHHHHHHHHHHHHHcC----CEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHH
Confidence 356666553 2333 44565555554 489999999999876 3333222223566666899999887644
No 315
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.96 E-value=0.03 Score=54.43 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|...|..++ ..|++|+++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 45999999999999999998 599999999985
No 316
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.89 E-value=0.035 Score=56.15 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=42.6
Q ss_pred EEEeCCCceecHHHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcc
Q 011027 225 AAFLPYDSQLDAMLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCW 299 (495)
Q Consensus 225 ~~~~~~~g~~~p~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~ 299 (495)
...+|.-|. ..+.+++.+.+.-.| .....+++|.+|..++ ++++.+|.+ +|+.+.++.|| +...+
T Consensus 223 PfLyP~YG~---GELpQ~FcRl~AV~G----G~Y~L~~~i~~i~~~~-~g~~~gV~s-~ge~v~~k~vI-~dpsy 287 (438)
T PF00996_consen 223 PFLYPLYGL---GELPQAFCRLSAVYG----GTYMLNRPIDEIVVDE-DGKVIGVKS-EGEVVKAKKVI-GDPSY 287 (438)
T ss_dssp SEEEETT-T---THHHHHHHHHHHHTT-----EEESS--EEEEEEET-TTEEEEEEE-TTEEEEESEEE-EEGGG
T ss_pred CEEEEccCC---ccHHHHHHHHhhhcC----cEEEeCCccceeeeec-CCeEEEEec-CCEEEEcCEEE-ECCcc
Confidence 455555553 377788777777666 4888999999998864 577888876 66767778776 44333
No 317
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.58 E-value=0.041 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.+++|||+|.+|+.+|..|+ ++|++|+|+|+...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~-~~G~~v~l~e~~~~ 170 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAA-KRGKKVTLIEAADR 170 (415)
T ss_pred CeEEEECCcHHHHHHHHHHH-HcCCeEEEEEcccc
Confidence 68999999999999999997 59999999999743
No 318
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.52 E-value=0.027 Score=51.68 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=26.5
Q ss_pred EEEECCCHHHHHHHHHHHh-cCCccEEEEcCC
Q 011027 84 VIIIGAGIIGLTIARQLLV-GSDLSVAVVDKV 114 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~-~~G~~V~liE~~ 114 (495)
.+||||||||.++|-.||+ ++..+|+|+-+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 6899999999999999996 366788888764
No 319
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.048 Score=50.32 Aligned_cols=32 Identities=38% Similarity=0.637 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
+++|||+|-.|.+.|..|+ +.|.+|+++|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~-~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS-EEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHH-hCCCceEEEEcCH
Confidence 5899999999999999998 5999999999973
No 320
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.051 Score=52.31 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|..|.+.|..|+ +.|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCC
Confidence 35999999999999999998 589999999975
No 321
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.35 E-value=0.05 Score=52.39 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|.|||+|..|...|..|+ +.|++|+++|++
T Consensus 3 ~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHH-hCCCcEEEEeCC
Confidence 4899999999999999998 589999999986
No 322
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.053 Score=56.40 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||+|.+|+++|..|+ ++|.+|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~-~~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALL-ELGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 46999999999999999997 599999999975
No 323
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.19 E-value=0.065 Score=51.72 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|..|...|..|+ +.|++|+++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 46999999999999999998 599999999985
No 324
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.029 Score=53.48 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
..+||+|||||.+|.++|.+.| +.|.+.-|+-.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaA-RKGiRTGl~ae 242 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAA-RKGIRTGLVAE 242 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHH-hhcchhhhhhh
Confidence 4699999999999999999998 58988766643
No 325
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.04 E-value=0.076 Score=47.98 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
..+|+|||+|..|+.+|..|+ +.|. +++|+|.+..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEE
Confidence 467999999999999999999 5998 6999998743
No 326
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.00 E-value=0.063 Score=54.33 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+|+..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~-~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASAT-QRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 57999999999999999997 5999999999864
No 327
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.68 E-value=0.072 Score=55.28 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+|+..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~-~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLA-DFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCeEEEEEecC
Confidence 358999999999999999997 5999999999863
No 328
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.67 E-value=0.08 Score=54.37 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+.+|..|+ +.|.+|+|+|+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~-~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYN-KLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 357999999999999999997 5999999999863
No 329
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.67 E-value=0.08 Score=51.06 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|..|...|..|+ +.|++|+++|+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCC
Confidence 35999999999999999998 599999999985
No 330
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.58 E-value=0.089 Score=53.72 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
+.+++|||||++|+=.|..++ +.|.+|||||+.+
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~-~LG~~VTiie~~~ 206 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFA-ALGSKVTVVERGD 206 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCcEEEEecCC
Confidence 467999999999999999997 6999999999964
No 331
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.57 E-value=0.091 Score=51.02 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||+|-+|...|+.|+ +.|.+|+++.++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEec
Confidence 56999999999999999998 589999999985
No 332
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.53 E-value=0.087 Score=52.90 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-+|..|+ ++|.+|+|+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~-~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLC-RAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHH-hcCCeEEEEecCC
Confidence 57999999999999999997 5999999999863
No 333
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.47 E-value=0.3 Score=48.00 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|++.||-|..-|+.|..|.+..+.++..+||.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk 38 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK 38 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecC
Confidence 36899999999999999999964456889999996
No 334
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.086 Score=54.50 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.|+|||.|.+|+++|+.|+ ++|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~-~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK-AQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHH-HCCCEEEEECCCC
Confidence 4899999999999999997 5999999999863
No 335
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.43 E-value=0.092 Score=50.37 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||+|.+|.+.|..|+ +.|++|+++|.+
T Consensus 5 kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHH-HCCCceEEEeCC
Confidence 5999999999999999998 589999999975
No 336
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.42 E-value=0.096 Score=50.77 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=28.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
..|.|||+|..|+++|+.|+. +|. +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-KELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 359999999999999999984 776 89999984
No 337
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.33 E-value=0.11 Score=50.66 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||+|..|...|..|+ +.|.+|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~-~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLA-RAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeCC
Confidence 357999999999999999998 5899999999863
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.31 E-value=0.12 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|...|..|+ ..|++|+++|+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCC
Confidence 35999999999999999998 589999999975
No 339
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.26 E-value=0.072 Score=54.08 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=32.5
Q ss_pred eEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHH
Q 011027 257 AEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGS 302 (495)
Q Consensus 257 ~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~ 302 (495)
+++++++|++|..+ +++ +.|.+.+|+.+.+|+||+|+......
T Consensus 225 ~i~l~~~V~~I~~~--~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 225 EIRLNTPVTRIERE--DGG-VTVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp GEESSEEEEEEEEE--SSE-EEEEETTSSEEEESEEEE-S-HHHHH
T ss_pred eeecCCcceecccc--ccc-cccccccceEEecceeeecCchhhhh
Confidence 88999999999987 444 46778888777789999999875543
No 340
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.25 E-value=0.099 Score=54.19 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|||+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~-~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYH-RLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCCEEEEecCC
Confidence 58999999999999999997 5999999999864
No 341
>PRK07846 mycothione reductase; Reviewed
Probab=93.18 E-value=0.1 Score=53.75 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~-~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFS-ALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEEcCC
Confidence 358999999999999999997 5999999999853
No 342
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.18 E-value=0.099 Score=54.05 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+|+..
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~-~~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFA-SLGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCcEEEEEcCC
Confidence 358999999999999999997 5899999999863
No 343
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.17 E-value=0.1 Score=53.77 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~-~~g~~Vtli~~~ 198 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLH-GLGSETHLVIRH 198 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCcEEEEecC
Confidence 357999999999999999998 599999999986
No 344
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.11 E-value=0.12 Score=51.20 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||+|..|...|..|+ +.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecH
Confidence 46999999999999999998 589999999985
No 345
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.10 E-value=0.16 Score=48.78 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|++|||||-.|+..|+..+ ..|.+|.|+|..
T Consensus 19 k~fDylvIGgGSGGvasARrAa-~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAA-SHGAKVALCELP 52 (478)
T ss_pred cccceEEEcCCcchhHHhHHHH-hcCceEEEEecC
Confidence 3799999999999999999998 599999999986
No 346
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.03 E-value=0.13 Score=50.01 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|.|||+|..|.+.|..|+ +.|++|+++|++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECC
Confidence 46999999999999999998 599999999975
No 347
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.92 E-value=0.11 Score=49.84 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||||.+|..+|+.+|. .|++|+++|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCC
Confidence 469999999999999999994 88999999986
No 348
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.87 E-value=0.12 Score=53.50 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||+|.+|+-+|..|+ +.|.+|+|+|+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~-~~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFA-RLGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCcEEEEEcC
Confidence 68999999999999999997 599999999986
No 349
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.86 E-value=0.12 Score=50.05 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
+|+|||+|..|...|..|+ +.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHH-HCCCceEEEec
Confidence 4899999999999999998 58999999998
No 350
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.84 E-value=0.12 Score=53.46 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||.+|+-.|..|+ +.|.+|+|+|+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~-~~G~~Vtlie~~ 206 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWR-RLGAQVTVVEYL 206 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEeCC
Confidence 367999999999999999997 599999999985
No 351
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.76 E-value=0.13 Score=53.16 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+++|||||.+|+-+|..|+ +.|.+|+|+++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~-~~g~~Vtli~~~~ 203 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYS-RLGTKVTIVEMAP 203 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 357999999999999999997 5899999999863
No 352
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.69 E-value=11 Score=37.70 Aligned_cols=90 Identities=19% Similarity=0.081 Sum_probs=52.4
Q ss_pred hhHHHhCCCCccCCcceEEEeCCCceecH--HHHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCe
Q 011027 208 SDLLQAEPELMVGEDSRAAFLPYDSQLDA--MLAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNT 285 (495)
Q Consensus 208 ~~~~~~~p~l~~~~~~~~~~~~~~g~~~p--~~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~ 285 (495)
+++.+.+|.+. ....--+.-.....++. .++.++..+...+.+ +.+..++.|..+..+ -..+.+.+|+
T Consensus 243 ~Dl~k~yp~l~-~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~----I~~~~~t~Vk~V~~~-----~I~~~~~~g~ 312 (491)
T KOG2495|consen 243 EDLRKIYPELK-KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDG----IDLDTGTMVKKVTEK-----TIHAKTKDGE 312 (491)
T ss_pred HHHHHhhhcch-hheEEEeeccchhHHHHHHHHHHHHHHHHhhhcc----ceeecccEEEeecCc-----EEEEEcCCCc
Confidence 45666677654 22222233333333432 345555555544443 788888888877532 2445566664
Q ss_pred --eeecCeEEEccCcchHHHHHHh
Q 011027 286 --LYSKKAIVVAAGCWSGSLMHDL 307 (495)
Q Consensus 286 --~~~a~~VV~A~G~~s~~l~~~l 307 (495)
.+.+-.+|.+||..+..+...+
T Consensus 313 ~~~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 313 IEEIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred eeeecceEEEecCCCCCchhhhhH
Confidence 4456789999999887776665
No 353
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.68 E-value=0.12 Score=46.31 Aligned_cols=33 Identities=39% Similarity=0.454 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|.|||||..|.-+|--.| ..|++|.|+|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a-~sg~~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAA-TSGLNVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHH-hcCCceEEecCC
Confidence 467999999999999999887 599999999986
No 354
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.63 E-value=0.15 Score=49.52 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|+|||+|-.|...|..|+ +.|.+|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCeEEEEECC
Confidence 4899999999999999998 589999999984
No 355
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.62 E-value=0.21 Score=42.03 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~ 114 (495)
...|+|||+|-+|-+++++|++ .|.+ |+|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 4679999999999999999984 7887 9999874
No 356
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.62 E-value=0.13 Score=53.10 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+|+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~-~~g~~Vtli~~~ 204 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYA-SLGAEVTIVEAL 204 (462)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCeEEEEEcC
Confidence 57999999999999999997 599999999985
No 357
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.62 E-value=0.16 Score=45.84 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=28.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||+|.++.-+|+.|+ +.|.+|+++-|..
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~-~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALA-KAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHT-TTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHH-hhCCEEEEEecCC
Confidence 468999999999999999998 5899999998853
No 358
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.57 E-value=0.14 Score=53.19 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|..+|..|+ +.|++|+|+|+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 45999999999999999998 599999999986
No 359
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.57 E-value=0.15 Score=49.93 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|..||++|.-|| +.|++|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA-~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLA-ELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHH-HcCCeEEEEeCC
Confidence 5899999999999999999 599999999986
No 360
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.55 E-value=0.14 Score=52.47 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~-~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLY-ERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCcEEEEeccc
Confidence 57999999999999999997 5999999999853
No 361
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.54 E-value=0.14 Score=53.06 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+|+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~-~~G~~Vtlv~~~ 204 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLK-NYGVDVTIVEFL 204 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHH-HcCCeEEEEecC
Confidence 357999999999999999997 599999999974
No 362
>PRK06370 mercuric reductase; Validated
Probab=92.39 E-value=0.15 Score=52.86 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~-~~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFR-RFGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HcCCeEEEEEcCC
Confidence 358999999999999999997 5999999999863
No 363
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.38 E-value=0.16 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||+|-+|+.+|..|+ +.|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~-~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLK-KLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 356999999999999999998 599999999985
No 364
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.37 E-value=0.22 Score=43.05 Aligned_cols=32 Identities=34% Similarity=0.356 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
...|+|||||-+|..-|..|. +.|.+|+||+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll-~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLK-DTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hCCCEEEEEcC
Confidence 467999999999999999997 59999999964
No 365
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.35 E-value=0.14 Score=55.78 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||||.+|..+|+.+| ..|++|+|+|..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCC
Confidence 56999999999999999999 599999999986
No 366
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.35 E-value=0.14 Score=55.58 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
-..|.|||||.+|..+|+.++ ..|++|+|+|..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~ 345 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDIN 345 (714)
T ss_pred cceEEEECCchHHHHHHHHHH-hCCCeEEEEeCC
Confidence 357999999999999999999 599999999986
No 367
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.35 E-value=0.15 Score=53.07 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|..+|..|+ +.|++|+|+|+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 45999999999999999998 599999999986
No 368
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.33 E-value=0.21 Score=45.34 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|||||-+|..-+..|. +.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll-~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLL-KAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 57999999999999999998 599999999864
No 369
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.32 E-value=0.19 Score=49.39 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|..|...|..|+ +.|++|+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAA-SKGVPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 46999999999999999998 599999999985
No 370
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.29 E-value=0.16 Score=51.84 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~-~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALR-ERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHH-hCCCcEEEEECCc
Confidence 57999999999999999997 5999999999863
No 371
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.28 E-value=0.16 Score=52.59 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+|+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~-~~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFA-ALGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCeEEEEecCC
Confidence 357999999999999999998 5999999999864
No 372
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.28 E-value=0.17 Score=40.35 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
...|+|||||-.|..-+..|. +.|.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll-~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLL-EAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHC-CCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHH-hCCCEEEEECCch
Confidence 467999999999999999997 6999999999863
No 373
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.28 E-value=0.18 Score=52.50 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|...|..|+ +.|++|+|+|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 35999999999999999998 599999999985
No 374
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.10 E-value=0.23 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||||=+|...|..|. +.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll-~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL-KYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 467999999999999999997 589999999863
No 375
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.10 E-value=0.19 Score=52.02 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||+|.+|+-.|..|+ +.|.+|+|+++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~-~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALS-RLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCcEEEEecCC
Confidence 357999999999999999997 5999999999863
No 376
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.09 E-value=0.18 Score=51.94 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+++|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~-~~G~~Vtli~~~ 201 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFS-ALGTRVTIVNRS 201 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHH-hCCCcEEEEEcc
Confidence 357999999999999999997 599999999985
No 377
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.08 E-value=0.21 Score=43.77 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=28.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|+|+|.+|..+|..|. ..|.+|+++|..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~-~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAK-GLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHh-HCCCEEEeccCC
Confidence 467999999999999999986 699999999986
No 378
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.99 E-value=0.22 Score=48.97 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.|. +++|+|.+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCcc
Confidence 467999999999999999999 5898 8999999644
No 379
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.87 E-value=0.18 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
-..|.|||||.+|..+|+.++ ..|++|+|+|..
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~ 367 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDAT 367 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHH-hCCCcEEEecCC
Confidence 356999999999999999998 599999999986
No 380
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.86 E-value=0.26 Score=43.12 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=28.6
Q ss_pred cccEEEECCCH-HHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGI-IGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGi-aGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||+|- +|..+|..|. ++|.+|+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~-~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLL-NRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-hCCCEEEEEECC
Confidence 57899999995 6999999996 589999999974
No 381
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.79 E-value=0.17 Score=42.44 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
+..|+|||+|-.|+.+|..|+ +.|. +++|+|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcce
Confidence 357999999999999999999 4887 7999998754
No 382
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.68 E-value=0.26 Score=43.46 Aligned_cols=33 Identities=39% Similarity=0.378 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVP 116 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~ 116 (495)
+|+|||+|-.|+.+|..|+ +.|.. ++|+|.+..
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEE
Confidence 3899999999999999999 58985 999998743
No 383
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.53 E-value=0.27 Score=46.36 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.| -+++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~La-r~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALA-RTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCEe
Confidence 467999999999999999999 588 68999998754
No 384
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.53 E-value=0.22 Score=51.73 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||+|.+|+-+|..|+ +.|.+|+|+|+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~-~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWR-RLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCeEEEEeCCC
Confidence 58999999999999999997 5899999999863
No 385
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.40 E-value=0.19 Score=47.44 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||++|.-+|.-+. ..|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHh-ccCCeeEEEecC
Confidence 468999999999999999886 599999999975
No 386
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.38 E-value=0.22 Score=50.59 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||.|.+|+.+|..|+ +.|++|+++|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCC
Confidence 46999999999999999998 599999999986
No 387
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.35 E-value=0.27 Score=48.33 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.|. +++|+|.+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcc
Confidence 467999999999999999999 5997 8999999754
No 388
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.33 E-value=0.21 Score=50.74 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|.+|+.+|..|+ +.|++|+++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHH-hcCCeEEEEECC
Confidence 4899999999999999998 599999999986
No 389
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.33 E-value=0.26 Score=47.89 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|.|||+|..|.+.|..|+ +.|++|+++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~-~~G~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLAS-ANGHRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 46999999999999999998 599999999986
No 390
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.33 E-value=0.23 Score=53.37 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+|+|||||.+|+-.|..|+ +.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~-~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYT-ALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHH-hCCCeEEEEeccC
Confidence 57999999999999999997 5999999999864
No 391
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.28 E-value=0.33 Score=47.37 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~ 115 (495)
...|+|||+|-+|.++|+.|+ ..|+ +|+|+|...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCC
Confidence 357999999999999999998 4785 899999853
No 392
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.24 E-value=0.22 Score=54.07 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|.|||+|.+|..+|..++.+.|++|+|+|..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 469999999999999999873379999999985
No 393
>PTZ00058 glutathione reductase; Provisional
Probab=91.19 E-value=0.23 Score=52.46 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-.|..|+ +.|.+|+|+|+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~-~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVN-RLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HcCCcEEEEEecc
Confidence 357999999999999999997 5999999999853
No 394
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.19 E-value=0.25 Score=51.59 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+++|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~-~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLN-ELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCcEEEEEcC
Confidence 47999999999999999998 599999999863
No 395
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.10 E-value=0.22 Score=54.24 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
-..|.|||||.+|..+|+.++...|++|+|+|..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 3569999999999999999883489999999975
No 396
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.03 E-value=0.26 Score=51.01 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+++|||+|.+|+-+|..|+ +.|.+|+|+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~-~~g~~Vtli~~~ 209 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYT-ELGVKVTLVSSR 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCeEEEEEcC
Confidence 57999999999999999997 599999999975
No 397
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.02 E-value=0.46 Score=36.31 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=28.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~ 113 (495)
..+++|+|+|.+|..+|..|.+..+.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356999999999999999998533789999998
No 398
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.97 E-value=0.3 Score=48.46 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~ 114 (495)
.+|+|||+|-+|.++|+.||+ +| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~-~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ-NGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh-CCCceEEEEeCC
Confidence 469999999999999999995 77 899999996
No 399
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.94 E-value=0.35 Score=44.11 Aligned_cols=35 Identities=37% Similarity=0.349 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.|.. ++|+|.+..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEe
Confidence 467999999999999999999 58975 999998744
No 400
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.90 E-value=0.28 Score=48.11 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||+|-.|.+.|..|+ +.|.+|++++++
T Consensus 2 kI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS-SKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHH-HCCCeEEEEecC
Confidence 4899999999999999998 589999999985
No 401
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.84 E-value=0.27 Score=50.61 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+++|||+|.+|+-+|..|+ +.|.+|+|+++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~-~~G~~Vtli~~~ 198 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWR-GLGVQVTLIYRG 198 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHH-HcCCeEEEEEeC
Confidence 357999999999999999997 599999999985
No 402
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.80 E-value=0.26 Score=51.76 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+++.
T Consensus 353 k~VvViGgG~~g~E~A~~L~-~~g~~Vtli~~~ 384 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLA-GIVRHVTVLEFA 384 (515)
T ss_pred CEEEEECCcHHHHHHHHHHH-hcCcEEEEEEeC
Confidence 58999999999999999997 589999999864
No 403
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.79 E-value=0.38 Score=43.60 Aligned_cols=35 Identities=34% Similarity=0.483 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||.|-.|..+|..|+ +.|. +++|+|.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEE
Confidence 467999999999999999998 5897 8999998643
No 404
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.76 E-value=0.3 Score=47.84 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||+|..|...|..|+ +.|++|+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLA-RNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCEEEEEECC
Confidence 5999999999999999998 589999999985
No 405
>PRK14727 putative mercuric reductase; Provisional
Probab=90.75 E-value=0.29 Score=50.86 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~-~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYA-RLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCEEEEEEcC
Confidence 57999999999999999997 599999999864
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.61 E-value=0.34 Score=48.35 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||+|.+|..+|..|. ..|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~-~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMAN-GLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHH-HCCCeEEEEECC
Confidence 456999999999999999996 689999999985
No 407
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.58 E-value=0.4 Score=38.85 Aligned_cols=31 Identities=45% Similarity=0.629 Sum_probs=27.0
Q ss_pred EEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
|+|||.|-.|..+|..|. +.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~-~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK-EGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHH-HTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHH-hCCCEEEEEECCc
Confidence 689999999999999997 4778999999973
No 408
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.58 E-value=0.28 Score=50.98 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+++|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~-~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLA-GIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHH-HhCCcEEEEEec
Confidence 47999999999999999998 599999999863
No 409
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=90.58 E-value=0.31 Score=50.08 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|. +.|.+|+|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~-~~g~~Vtli~~~ 181 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAK-HLGKNVRIIQLE 181 (444)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCcEEEEeCC
Confidence 57999999999999999997 589999999875
No 410
>PRK10262 thioredoxin reductase; Provisional
Probab=90.53 E-value=0.29 Score=47.90 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||+|.+|+-+|..|+ +.|.+|+++++.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~-~~~~~Vtlv~~~ 178 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLS-NIASEVHLIHRR 178 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hhCCEEEEEEEC
Confidence 357999999999999999998 589999999985
No 411
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.52 E-value=0.31 Score=50.03 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||+|.+|+-.|..|+ +.|.+|+|++++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~-~~g~~Vtli~~~ 190 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFA-NFGSKVTILEAA 190 (441)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCeEEEEecC
Confidence 57999999999999999997 599999999985
No 412
>PLN02507 glutathione reductase
Probab=90.47 E-value=0.29 Score=51.06 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-.|..|+ +.|.+|+|+++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~-~~G~~Vtli~~~~ 236 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWR-GMGATVDLFFRKE 236 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHH-HcCCeEEEEEecC
Confidence 357999999999999999997 5999999999853
No 413
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.47 E-value=0.28 Score=50.48 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~-~~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTAL-RLGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCEEEEEeec
Confidence 57999999999999999997 599999999986
No 414
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.46 E-value=0.31 Score=46.69 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|.|||.|..|.+.|..|+ +.|++|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~-~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR-SLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHH-HCCCEEEEEECC
Confidence 4899999999999999997 589999999985
No 415
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.44 E-value=0.29 Score=51.82 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|+++..
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~-~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLT-RYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHH-ccCCEEEEEEeCC
Confidence 357999999999999999997 5899999999863
No 416
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.42 E-value=0.45 Score=40.36 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
.|+|||+|-.|+.+|..|+ +.|. +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCCCc
Confidence 3899999999999999998 5897 7999998754
No 417
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.41 E-value=0.31 Score=53.92 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|+ +.|.+|+|+|+.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~-~~G~~Vtvv~~~ 172 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQ-NLGMDVSVIHHA 172 (785)
T ss_pred CeEEEECCCHHHHHHHHHHH-hcCCeEEEEccC
Confidence 57999999999999999997 599999999975
No 418
>PRK13748 putative mercuric reductase; Provisional
Probab=90.40 E-value=0.3 Score=51.92 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~-~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFA-RLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCEEEEEecC
Confidence 57999999999999999997 599999999974
No 419
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.38 E-value=0.29 Score=47.37 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=26.8
Q ss_pred EEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
|.|||+|.+|.++|+.|+. .|+ +|+|+|..
T Consensus 1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCC
Confidence 5799999999999999984 666 99999986
No 420
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.16 E-value=0.39 Score=46.71 Aligned_cols=32 Identities=41% Similarity=0.603 Sum_probs=28.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
.+|+|||+|..|.++|+.|+. .|. .|+|+|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-KELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEEECC
Confidence 469999999999999999984 665 99999984
No 421
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.15 E-value=0.35 Score=48.59 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|.|||.|.+|+.+|..|+ .|++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA--QNHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHH--hCCcEEEEECC
Confidence 4899999999999998876 38999999986
No 422
>PRK12831 putative oxidoreductase; Provisional
Probab=90.07 E-value=0.33 Score=50.22 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||.+|+-+|..|+ +.|.+|+|++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~-r~Ga~Vtlv~r~ 313 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTAL-RLGAEVHIVYRR 313 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHH-HcCCEEEEEeec
Confidence 358999999999999999997 599999999975
No 423
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.01 E-value=0.42 Score=41.64 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|.|||-|..|...|..|+ +.|++|.++|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~-~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLA-KAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHH-HTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHH-hcCCeEEeeccc
Confidence 35899999999999999998 599999999985
No 424
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.89 E-value=0.44 Score=45.66 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
..+|+|||+|-+|.++|+.|+ +.|. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~-~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALL-TLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 357999999999999999998 4887 79999885
No 425
>PLN02546 glutathione reductase
Probab=89.88 E-value=0.36 Score=50.99 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||||.+|+-.|..|+ +.|.+|+|+++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~-~~g~~Vtlv~~~ 284 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFN-GLKSDVHVFIRQ 284 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHH-hcCCeEEEEEec
Confidence 357999999999999999997 589999999985
No 426
>PRK04148 hypothetical protein; Provisional
Probab=89.86 E-value=0.29 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=28.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|++||.| .|.+.|..|+ +.|.+|+.+|.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~-~~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLK-ESGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHH-HCCCEEEEEECC
Confidence 469999999 9999999997 599999999986
No 427
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=89.85 E-value=0.3 Score=46.53 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=27.7
Q ss_pred ccEEEEC-CCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 82 FDVIIIG-AGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 82 ~dVvIIG-aGiaGls~A~~La~~~G~~V~liE~ 113 (495)
..|+|.| +|.+|..|+.+|. ++|+.|+++|-
T Consensus 3 ~~VLVtGgaGyiGsht~l~L~-~~gy~v~~vDN 34 (343)
T KOG1371|consen 3 KHVLVTGGAGYIGSHTVLALL-KRGYGVVIVDN 34 (343)
T ss_pred cEEEEecCCcceehHHHHHHH-hCCCcEEEEec
Confidence 4588887 8999999999997 69999999995
No 428
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.78 E-value=0.35 Score=53.66 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.+++|||||..|+-+|..|+ +.|.+|+|+|...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~-~~G~~VtvVe~~~ 178 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALK-NLGVETHVIEFAP 178 (847)
T ss_pred CeEEEECCCHHHHHHHHHHH-HcCCeEEEEeccc
Confidence 47999999999999999997 5999999999853
No 429
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.75 E-value=0.37 Score=47.84 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~ 114 (495)
..|+|||+|..|+-+|..|+ ++|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~-~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAV-LLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCeEEEEeec
Confidence 47999999999999999997 48987 9999875
No 430
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=89.51 E-value=26 Score=36.01 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhccCCceeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcc
Q 011027 238 LAVAYIEKGNRHFASKGRYAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCW 299 (495)
Q Consensus 238 ~~~~~l~~~~~~~g~~~~~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~ 299 (495)
.+++.|.+.+.. ..++++++|++|..+ + ..|.|++.+|+.+.+|.||+|+-+.
T Consensus 226 ~l~~~l~~~l~~------~~i~~~~~V~~I~~~--~-~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 226 TLPEEIEKRLKL------TKVYKGTKVTKLSHR--G-SNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHHhcc------CeEEcCCeEEEEEec--C-CcEEEEECCCcEEEcCEEEECCCHH
Confidence 455555544321 378899999999875 2 3467888887666789999999764
No 431
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.45 E-value=0.46 Score=48.95 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcC--CccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGS--DLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~--G~~V~liE~~ 114 (495)
.+|+|||.|..|+.+|..||+ . |++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECC
Confidence 359999999999999999995 6 5889999976
No 432
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.57 Score=45.44 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~ 116 (495)
.+||+|+|-|+.=+..+..|+ ..|.+|+.||+++.
T Consensus 6 ~yDvii~GTgl~esils~~Ls-~~~k~VlhiD~Nd~ 40 (434)
T COG5044 6 LYDVIILGTGLRESILSAALS-WDGKNVLHIDKNDY 40 (434)
T ss_pred cccEEEecccHHHHHHHHHhh-hcCceEEEEeCCCc
Confidence 599999999999999999998 59999999999876
No 433
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=89.19 E-value=0.39 Score=45.63 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=29.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~ 114 (495)
++.|+|||||-.|++.|..+.++-| -+|.|+|..
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 6899999999999999999985444 389999975
No 434
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.07 E-value=0.54 Score=43.36 Aligned_cols=32 Identities=41% Similarity=0.659 Sum_probs=28.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCcc---EEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLS---VAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~---V~liE~~ 114 (495)
..|+|+|+|-+|..+|+.|+ +.|.+ |.|+++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~-~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLL-AAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHH-HcCcCcceEEEEeCC
Confidence 56999999999999999997 58875 9999986
No 435
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.89 E-value=0.52 Score=45.76 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC--ccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD--LSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G--~~V~liE~~ 114 (495)
.|+|||+|-+|.++|+.|+ ..| .+++|+|+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLV-NQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC
Confidence 4899999999999999998 478 479999985
No 436
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.87 E-value=0.48 Score=45.63 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|..|...|..|+ +.|++|+++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~-~~G~~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLA-KAGYQLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 3889999999999999998 599999999986
No 437
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.50 E-value=0.64 Score=45.38 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~~ 115 (495)
...|+|||+|-+|.++|+.|+. .| ..++|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-KNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-CCCCeEEEEECCC
Confidence 4579999999999999999984 67 5899999853
No 438
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.45 E-value=0.69 Score=43.10 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
..+|+|||+|-.|+.+|..|+ +.|. +++|+|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcc
Confidence 467999999999999999998 5885 7999998754
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.27 E-value=0.66 Score=42.58 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.3
Q ss_pred cEEEEC-CCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIG-AGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIG-aGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.||| +|..|.+.|..|+ +.|++|++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcC
Confidence 489997 7999999999998 589999998764
No 440
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.26 E-value=0.51 Score=49.58 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|+|||||..|+-+|..|+ ..+.+|+|++++
T Consensus 352 k~VvVVGgG~~g~e~A~~L~-~~~~~Vtlv~~~ 383 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLA-GIVKHVTVLEFA 383 (517)
T ss_pred CEEEEECCCHHHHHHHHHHH-hcCCEEEEEEEC
Confidence 57999999999999999998 589999999865
No 441
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.26 E-value=0.54 Score=45.21 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..+|+|||+|..|+-+|..|+ +.+.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~-~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLT-RIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHH-hhcCEEEEEEeC
Confidence 358999999999999999997 589999999984
No 442
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.17 E-value=0.81 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc--cEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL--SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~--~V~liE~~ 114 (495)
..+|+|||+|-+|.++|+.|+ ..|. .+.|+|.+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCC
Confidence 357999999999999999998 4777 79999975
No 443
>PRK08328 hypothetical protein; Provisional
Probab=88.09 E-value=0.78 Score=42.50 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.|. +++|+|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcc
Confidence 467999999999999999999 5886 6999987644
No 444
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.06 E-value=0.73 Score=42.84 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC-----------ccEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD-----------LSVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G-----------~~V~liE~~~~ 116 (495)
..+|+|||+|-.|+.++..|++ .| .+++|+|.+.+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar-~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLAR-LHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHH-ccccccccCCCCCCEEEEECCCEE
Confidence 5789999999999999999994 43 38999998754
No 445
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.93 E-value=0.95 Score=38.32 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=27.0
Q ss_pred cEEEECC-CHHHHHHHHHHHhcCC--ccEEEEcCC
Q 011027 83 DVIIIGA-GIIGLTIARQLLVGSD--LSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGa-GiaGls~A~~La~~~G--~~V~liE~~ 114 (495)
+|+|||+ |-.|.++|+.|.+ .+ .++.|+|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~-~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ-QGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-TTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHh-CCCCCceEEeccC
Confidence 5899999 9999999999985 45 469999986
No 446
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.91 E-value=0.81 Score=41.34 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|.|-.|..+|..|. +.|.+|+++|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~-~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLL-EEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 56999999999999999997 599999998864
No 447
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=87.54 E-value=0.6 Score=48.07 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|.|||.|..|...|..|+ ++|++|+++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~-~~G~~V~v~dr~ 33 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIA-SRGFKISVYNRT 33 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHH-HCCCeEEEEeCC
Confidence 46999999999999999998 599999999996
No 448
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.52 E-value=0.82 Score=42.77 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
..+|+|||+|-.|+.+|..|+ ..|. +++|+|.+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEE
Confidence 578999999999999999999 5886 8999998743
No 449
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.48 E-value=0.67 Score=48.00 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||+|.+|+.++..+. ..|.+|+++|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak-~lGA~V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAG-SLGAIVRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 467999999999999999875 699999999986
No 450
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.42 E-value=0.84 Score=44.35 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=28.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc--cEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL--SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~--~V~liE~~ 114 (495)
+..|+|||+|-+|.++|+.|+. .|. .+.|+|..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-KGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC
Confidence 4579999999999999999984 554 69999974
No 451
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.38 E-value=0.87 Score=42.12 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ +.|. +++|+|.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEE
Confidence 467999999999999999999 5886 8999998743
No 452
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.34 E-value=0.75 Score=43.53 Aligned_cols=29 Identities=45% Similarity=0.686 Sum_probs=26.2
Q ss_pred EEEEC-CCHHHHHHHHHHHhcCCccEEEEcC
Q 011027 84 VIIIG-AGIIGLTIARQLLVGSDLSVAVVDK 113 (495)
Q Consensus 84 VvIIG-aGiaGls~A~~La~~~G~~V~liE~ 113 (495)
|+|.| +|.+|..++.+|. +.|++|+|+|-
T Consensus 3 iLVtGGAGYIGSHtv~~Ll-~~G~~vvV~DN 32 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLL-KTGHEVVVLDN 32 (329)
T ss_pred EEEecCcchhHHHHHHHHH-HCCCeEEEEec
Confidence 67776 8999999999998 59999999996
No 453
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.18 E-value=0.78 Score=41.93 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcCCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVPCS 118 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~~~ 118 (495)
..+|+|||.|-.|.+++-+|+ +.|. +.+|||.++++-
T Consensus 30 ~~~V~VvGiGGVGSw~veALa-RsGig~itlID~D~v~v 67 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALA-RSGIGRITLIDMDDVCV 67 (263)
T ss_pred hCcEEEEecCchhHHHHHHHH-HcCCCeEEEEecccccc
Confidence 568999999999999999999 5886 899999987754
No 454
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.02 E-value=0.97 Score=40.56 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=28.1
Q ss_pred ccEEEECC-CHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGA-GIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGa-GiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..++|+|| |-+|..+|..|+ +.|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 56999997 999999999998 489999999764
No 455
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.01 E-value=0.71 Score=47.66 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
..+|+|||||.+|+-+|..|+ +.|. +|+|++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~-~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAK-RLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHH-HcCCCeEEEeeec
Confidence 358999999999999999997 5887 89999975
No 456
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.99 E-value=0.77 Score=44.37 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|..|...|..|+ +.|++|+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~-~~G~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLL-KQGHQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 5899999999999999998 589999999985
No 457
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.90 E-value=0.91 Score=43.82 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||.|.+|..+|..|. ..|.+|+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~-~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK-ALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HCCCEEEEEECC
Confidence 467999999999999999996 689999999986
No 458
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=86.89 E-value=1.1 Score=45.58 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.9
Q ss_pred cccEEEECC-CHHHHHHHHHHHhcC-------Cc--cEEEEcCC
Q 011027 81 TFDVIIIGA-GIIGLTIARQLLVGS-------DL--SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGa-GiaGls~A~~La~~~-------G~--~V~liE~~ 114 (495)
...|.|||+ |-+|.++|+.|+. . |. +++++|..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~-~~v~g~~~~i~~eLvliD~~ 142 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLAS-GEVFGPDQPIALKLLGSERS 142 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh-cccccCCCCcccEEEEEcCC
Confidence 367999999 9999999999984 5 54 78888875
No 459
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.82 E-value=0.78 Score=44.48 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
.|+|+|+|..|+..|+.|+ +.|..|+++-|..
T Consensus 2 kI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLA-KAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHH-hCCCeEEEEecHH
Confidence 4899999999999999998 5888888887753
No 460
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=86.71 E-value=0.67 Score=38.92 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=25.7
Q ss_pred EEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
++|+|+|-.+..+|..+. ..|++|+|+|.+
T Consensus 1 L~I~GaG~va~al~~la~-~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAA-LLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHH-HCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHH-hCCCEEEEEcCC
Confidence 589999999999999875 699999999987
No 461
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.69 E-value=0.96 Score=43.51 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~ 114 (495)
..++|+|||=+|.++|+.|+ +.|.+ |+|+.|.
T Consensus 127 k~vlI~GAGGagrAia~~La-~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCA-LDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCC
Confidence 56999999999999999998 58986 9999874
No 462
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.61 E-value=0.79 Score=46.80 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.7
Q ss_pred eeEEecCceeEEEEecCCCcEEEEEcCCCeeeecCeEEEccCcchHHHHHH
Q 011027 256 YAEFYHDPVTCLLRSNSTGEVEAVQTSKNTLYSKKAIVVAAGCWSGSLMHD 306 (495)
Q Consensus 256 ~~~~~~~~V~~l~~~~~~~~~~~v~~~~g~~~~a~~VV~A~G~~s~~l~~~ 306 (495)
|+++.+++|+++.. + .|.+++|+.+.+|.||+|+|.-.+.+...
T Consensus 243 V~v~~~~~v~~v~~----~---~v~~~~g~~i~~d~vi~~~G~~~~~~~~~ 286 (424)
T PTZ00318 243 VDIRTKTAVKEVLD----K---EVVLKDGEVIPTGLVVWSTGVGPGPLTKQ 286 (424)
T ss_pred CEEEeCCeEEEEeC----C---EEEECCCCEEEccEEEEccCCCCcchhhh
Confidence 67788888888753 2 25567777777899999999766655554
No 463
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.51 E-value=0.95 Score=43.05 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...++|+|+|-+|.++|+.|+ +.|.+|++++|.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~-~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLL-KADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 357999999999999999998 589999999874
No 464
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.40 E-value=0.96 Score=43.85 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=26.9
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCc--cEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDL--SVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~--~V~liE~~ 114 (495)
.|.|||+|-+|.++|+.|+. .+. .++|+|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-LGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCC
Confidence 38999999999999999984 665 69999975
No 465
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=0.46 Score=46.59 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=35.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCcCCCCcc
Q 011027 80 HTFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVVPCSGAT 121 (495)
Q Consensus 80 ~~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~~~~gaS 121 (495)
.++||+|+|-|+.=|..+-.|+ ..|.+|+.+||++.-++.|
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls-~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALS-VDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CceeEEEEcCCchhheeeeeee-ecCcEEEEEeCCCCCCccc
Confidence 3699999999999999999997 6999999999997644433
No 466
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.09 E-value=1 Score=46.74 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|.|.+|.++|..|. +.|.+|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~-~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLS-ELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHH-HCCCEEEEECCC
Confidence 45999999999999999997 699999999974
No 467
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.01 E-value=1 Score=43.17 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||.|-+|.++|..|. ..|.+|+++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~-~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS-ALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 357999999999999999996 589999999985
No 468
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.86 E-value=0.97 Score=45.55 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||+|.+|+.+|..|. ..|.+|+++|..
T Consensus 202 GktVvViG~G~IG~~va~~ak-~~Ga~ViV~d~d 234 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLR-GQGARVIVTEVD 234 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEECC
Confidence 357999999999999999985 689999999875
No 469
>PRK08223 hypothetical protein; Validated
Probab=85.83 E-value=1.2 Score=42.49 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ ..|. +++|+|.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCc
Confidence 567999999999999999999 5886 7999998744
No 470
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.80 E-value=1.4 Score=37.71 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~ 114 (495)
..|+|||+|-+|.+.|..|++ .| .+|+++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~ 52 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAE-LGAAKIVIVNRT 52 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCC
Confidence 569999999999999999974 65 789999874
No 471
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.79 E-value=1.2 Score=41.16 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||.|-.|..+|..|+ +.|. +++|+|.+.+
T Consensus 11 ~~~VlVvG~GGvGs~va~~La-r~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALA-RSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEE
Confidence 467999999999999999999 5887 8999998754
No 472
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.70 E-value=1.2 Score=40.21 Aligned_cols=35 Identities=34% Similarity=0.629 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~~~ 116 (495)
..+|+|||+|-.|+.+|..|+ ..|.. ++|+|.+..
T Consensus 19 ~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCcC
Confidence 467999999999999999999 58975 999998754
No 473
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.69 E-value=1 Score=45.04 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.6
Q ss_pred cccEEEEC-CCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIG-AGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIG-aGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+||| .|..|.+.|..|. +.|+.|+++++.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~-~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLT-LSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHH-HCCCeEEEeCCC
Confidence 35699999 8999999999997 599999999984
No 474
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.65 E-value=0.91 Score=46.70 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|+|-+|.++|..|+ +.|.+|++.|+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~-~~G~~V~~~d~~ 37 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLH-KLGANVTVNDGK 37 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 45899999999999999997 599999999975
No 475
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=85.64 E-value=1.1 Score=43.24 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.+|.|||.|..|...|..|+ +.|++|++++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~-~~g~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLL-KAGYSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHH-HCCCeEEEEcCC
Confidence 36999999999999999998 589999999985
No 476
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.17 E-value=1.2 Score=42.54 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=29.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCC-ccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSD-LSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G-~~V~liE~~ 114 (495)
...|+|+|+|-+|.++|++|+ ..| .+|+|+.|.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~-~~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLL-DLGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHH-HcCCCEEEEEeCC
Confidence 357999999999999999998 588 789999884
No 477
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.10 E-value=1 Score=46.63 Aligned_cols=32 Identities=22% Similarity=0.038 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|.|..|.++|..|. +.|.+|++.|.+
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~-~~g~~v~~~d~~ 40 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALR-AHLPAQALTLFC 40 (468)
T ss_pred CEEEEEccchhhHHHHHHHH-HcCCEEEEEcCC
Confidence 46999999999999999997 699999999965
No 478
>PRK09897 hypothetical protein; Provisional
Probab=85.10 E-value=9.9 Score=39.95 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred cccEEEECCCHHHHHHHHHHHh
Q 011027 81 TFDVIIIGAGIIGLTIARQLLV 102 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~ 102 (495)
..+|+|||.|.+.+=++..|..
T Consensus 191 ~~~V~I~GtGLt~iD~v~~Lt~ 212 (534)
T PRK09897 191 ACNVGIMGTSLSGLDAAMAVAI 212 (534)
T ss_pred CCeEEEECCCHHHHHHHHHHHh
Confidence 4789999999999999999974
No 479
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.09 E-value=1.2 Score=46.08 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|||+|.+|+.++..+. ..|.+|+++|.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak-~lGA~V~v~d~~ 196 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAAN-SLGAIVRAFDTR 196 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 467999999999999999885 689999999985
No 480
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.07 E-value=1.4 Score=39.75 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ ..|. +++|+|.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCcc
Confidence 467999999999999999999 5997 5999998744
No 481
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.07 E-value=1 Score=43.71 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=28.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCc--cEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDL--SVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~--~V~liE~~ 114 (495)
.+|+|||+|.+|.+.|..|+ +.|+ +|+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~-~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIR-RLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHH-hcCCCcEEEEEECC
Confidence 46999999999999999997 5785 89999885
No 482
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.05 E-value=1.2 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|.|-+|.++|..|+ ++|++|++.|..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~-~~g~~v~~~d~~ 37 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLR-KNGAEVAAYDAE 37 (445)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC
Confidence 46999999999999999997 599999999975
No 483
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.02 E-value=1.3 Score=44.26 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCcC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVVP 116 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~~~ 116 (495)
...|+|||+|-.|+.+|..|+ ..|. +++|+|.+.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTV 76 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEE
Confidence 467999999999999999998 5886 8999998754
No 484
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.79 E-value=1.1 Score=43.24 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|..|...|..|+ +.|++|+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~-~~g~~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLA-KRGHDCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHH-HCCCEEEEEECC
Confidence 4899999999999999998 599999999986
No 485
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.70 E-value=0.92 Score=46.02 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
...|+|+|-|..|+++|..|. ++|.+|++.|.+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~-~~G~~v~v~D~~~ 40 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL-KLGAEVTVSDDRP 40 (448)
T ss_pred CCEEEEEecccccHHHHHHHH-HCCCeEEEEcCCC
Confidence 356999999999999999997 6999999999763
No 486
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.64 E-value=1.1 Score=46.23 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
..|+|+|.|.+|.++|..|. +.|++|++.|+..
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~-~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLV-KLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHH-HCCCEEEEECCCC
Confidence 45999999999999999997 6999999999753
No 487
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.56 E-value=1 Score=49.60 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCcc-EEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLS-VAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~-V~liE~~ 114 (495)
.+|+|||||.+|+-+|..|. +.|.+ |+|++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~-r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAK-RLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHH-HcCCCeEEEeeec
Confidence 57999999999999999997 58987 9999975
No 488
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=84.42 E-value=1.2 Score=43.85 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHHHhcCC--------ccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSD--------LSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G--------~~V~liE~~ 114 (495)
+|.|||+|--|.+.|..|+ +.| .+|+|+.++
T Consensus 1 kI~VIGaG~wGtALA~~la-~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA-ENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCcccccCCceEEEEEec
Confidence 4899999999999999998 478 999999873
No 489
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.20 E-value=1.3 Score=43.28 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=27.8
Q ss_pred ccEEEECC-CHHHHHHHHHHHhcCCc-------cEEEEcCC
Q 011027 82 FDVIIIGA-GIIGLTIARQLLVGSDL-------SVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGa-GiaGls~A~~La~~~G~-------~V~liE~~ 114 (495)
..|+|||+ |-.|.++|+.|+ ..|. .++|+|..
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~ 42 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIA-SGEMFGPDQPVILQLLELP 42 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHH-hccccCCCCceEEEEEecC
Confidence 57999999 999999999998 4665 79999984
No 490
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.19 E-value=1.5 Score=38.62 Aligned_cols=31 Identities=29% Similarity=0.575 Sum_probs=28.2
Q ss_pred EEEECC-CHHHHHHHHHHHhcCCccEEEEcCCc
Q 011027 84 VIIIGA-GIIGLTIARQLLVGSDLSVAVVDKVV 115 (495)
Q Consensus 84 VvIIGa-GiaGls~A~~La~~~G~~V~liE~~~ 115 (495)
|+|+|| |.+|..++.+|. ++|++|+++-|+.
T Consensus 1 I~V~GatG~vG~~l~~~L~-~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLL-RRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHH-HCCCEEEEEecCc
Confidence 789997 999999999998 5999999999863
No 491
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.06 E-value=1.5 Score=42.53 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.2
Q ss_pred cEEEECC-CHHHHHHHHHHHhcCCc--cEEEEcCCc
Q 011027 83 DVIIIGA-GIIGLTIARQLLVGSDL--SVAVVDKVV 115 (495)
Q Consensus 83 dVvIIGa-GiaGls~A~~La~~~G~--~V~liE~~~ 115 (495)
.|+|||+ |-.|.++|+.|+. .+. .++|+|...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-QPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-CCCCcEEEEecCCC
Confidence 3899999 9999999999984 665 799999754
No 492
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=83.96 E-value=3.2 Score=42.93 Aligned_cols=38 Identities=34% Similarity=0.438 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhc-----CCccEEEEcCCcCCCCc
Q 011027 83 DVIIIGAGIIGLTIARQLLVG-----SDLSVAVVDKVVPCSGA 120 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~-----~G~~V~liE~~~~~~ga 120 (495)
+|+||||||+||++||.|++. .|.+|+|+|+++..+|-
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 699999999999999999742 24899999998654443
No 493
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.82 E-value=1.4 Score=45.46 Aligned_cols=31 Identities=42% Similarity=0.728 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|+|||+|-.|..+|..|. +.|.+|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~-~~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLS-GENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCCcEEEEECC
Confidence 5999999999999999997 589999999985
No 494
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.78 E-value=1.3 Score=42.79 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
+|.|||.|..|...|..|+ +.|++|+++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~-~~g~~v~v~dr~ 32 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLL-RGGHEVVGYDRN 32 (301)
T ss_pred EEEEEcccHHHHHHHHHHH-HCCCeEEEEECC
Confidence 4899999999999999998 589999999985
No 495
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.72 E-value=1.8 Score=43.32 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=29.8
Q ss_pred cccEEEECC-CHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 81 TFDVIIIGA-GIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGa-GiaGls~A~~La~~~G~~V~liE~~ 114 (495)
...|+|.|| |.+|..++.+|. ++|++|+.+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~-~~G~~V~~v~r~ 54 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLK-AEGHYIIASDWK 54 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHH-hCCCEEEEEEec
Confidence 467999998 999999999997 589999999975
No 496
>PRK08017 oxidoreductase; Provisional
Probab=83.67 E-value=1.6 Score=40.87 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.9
Q ss_pred cEEEECC-CHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 83 DVIIIGA-GIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 83 dVvIIGa-GiaGls~A~~La~~~G~~V~liE~~ 114 (495)
.|+|+|| |-.|..+|..|+ ++|++|+++.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~-~~g~~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELK-RRGYRVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHH-HCCCEEEEEeCC
Confidence 4999998 999999999998 589999998875
No 497
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=83.60 E-value=1.3 Score=44.49 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=25.7
Q ss_pred EEEECCCHHHHHHHHHHHhcCCc-cEEEEcCCc
Q 011027 84 VIIIGAGIIGLTIARQLLVGSDL-SVAVVDKVV 115 (495)
Q Consensus 84 VvIIGaGiaGls~A~~La~~~G~-~V~liE~~~ 115 (495)
|+|||||-+|..+|..|+++... +|+|.+++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 78999999999999999864445 899999973
No 498
>PRK05442 malate dehydrogenase; Provisional
Probab=83.56 E-value=1.4 Score=43.05 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=27.7
Q ss_pred cccEEEECC-CHHHHHHHHHHHhcCCc-------cEEEEcCC
Q 011027 81 TFDVIIIGA-GIIGLTIARQLLVGSDL-------SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGa-GiaGls~A~~La~~~G~-------~V~liE~~ 114 (495)
...|.|||+ |-+|.++|+.|+. .|. ++.|+|..
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~-~~~~~~~~~~el~LiDi~ 44 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIAS-GDMLGKDQPVILQLLEIP 44 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHh-hhhcCCCCccEEEEEecC
Confidence 467999998 9999999999984 554 79999973
No 499
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.45 E-value=1.4 Score=45.94 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhcCCccEEEEcCC
Q 011027 82 FDVIIIGAGIIGLTIARQLLVGSDLSVAVVDKV 114 (495)
Q Consensus 82 ~dVvIIGaGiaGls~A~~La~~~G~~V~liE~~ 114 (495)
..|+|+|.|.+|++++..|. +.|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~-~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALT-RFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEcCC
Confidence 45999999999999999886 699999999964
No 500
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.44 E-value=1.6 Score=41.82 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhcCCc-cEEEEcCC
Q 011027 81 TFDVIIIGAGIIGLTIARQLLVGSDL-SVAVVDKV 114 (495)
Q Consensus 81 ~~dVvIIGaGiaGls~A~~La~~~G~-~V~liE~~ 114 (495)
...|+|||+|=++-++|++|+ +.|. +|+|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~-~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALA-SLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 357999999999999999998 4886 69999874
Done!